Query 004336
Match_columns 760
No_of_seqs 884 out of 4487
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 21:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 6.7E-33 2.3E-37 304.2 43.5 356 363-756 16-383 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 4.6E-32 1.6E-36 297.6 42.9 332 389-755 5-348 (388)
3 3ieg_A DNAJ homolog subfamily 100.0 3.5E-29 1.2E-33 269.0 44.2 310 383-756 3-350 (359)
4 2y4t_A DNAJ homolog subfamily 100.0 1.4E-28 4.9E-33 274.4 41.8 313 379-755 22-372 (450)
5 3fp2_A TPR repeat-containing p 100.0 3E-28 1E-32 278.0 38.2 336 382-752 24-502 (537)
6 2xpi_A Anaphase-promoting comp 100.0 2.9E-28 9.8E-33 282.5 38.4 340 382-757 199-595 (597)
7 2gw1_A Mitochondrial precursor 100.0 8.9E-28 3E-32 272.0 37.6 336 380-751 3-488 (514)
8 2gw1_A Mitochondrial precursor 100.0 8.1E-28 2.8E-32 272.3 35.6 334 361-716 21-486 (514)
9 2xpi_A Anaphase-promoting comp 100.0 3.8E-26 1.3E-30 264.6 40.7 373 360-755 98-559 (597)
10 2y4t_A DNAJ homolog subfamily 100.0 1.1E-25 3.7E-30 251.0 40.7 319 360-745 40-414 (450)
11 3hym_B Cell division cycle pro 100.0 4.5E-26 1.5E-30 242.1 35.1 286 385-755 24-313 (330)
12 3ieg_A DNAJ homolog subfamily 99.9 9.4E-25 3.2E-29 234.3 39.5 290 360-716 17-343 (359)
13 4g1t_A Interferon-induced prot 99.9 1.1E-24 3.9E-29 244.7 37.1 337 380-752 48-412 (472)
14 3fp2_A TPR repeat-containing p 99.9 3.9E-25 1.3E-29 252.2 33.2 335 361-716 40-499 (537)
15 1fch_A Peroxisomal targeting s 99.9 1.1E-25 3.9E-30 243.6 25.8 303 393-741 35-359 (368)
16 4g1t_A Interferon-induced prot 99.9 3.7E-24 1.3E-28 240.5 33.0 366 347-752 53-470 (472)
17 4eqf_A PEX5-related protein; a 99.9 1.3E-24 4.4E-29 235.9 27.0 261 386-740 68-355 (365)
18 3hve_A Gigaxonin; ubiquitin, c 99.9 3.7E-26 1.3E-30 237.0 11.7 146 176-325 26-173 (256)
19 3cv0_A Peroxisome targeting si 99.9 2.5E-24 8.7E-29 228.2 26.0 266 386-745 24-319 (327)
20 3htm_A Speckle-type POZ protei 99.9 1.4E-25 4.7E-30 218.1 13.2 141 177-321 30-170 (172)
21 3hym_B Cell division cycle pro 99.9 3.4E-23 1.2E-27 219.8 31.9 273 360-729 36-322 (330)
22 1fch_A Peroxisomal targeting s 99.9 9.2E-24 3.1E-28 228.6 27.4 260 384-708 65-359 (368)
23 2h6f_A Protein farnesyltransfe 99.9 3.2E-24 1.1E-28 235.2 24.0 256 409-754 89-361 (382)
24 3i3n_A Kelch-like protein 11; 99.9 1.3E-25 4.4E-30 235.9 9.4 148 177-326 28-182 (279)
25 2h6f_A Protein farnesyltransfe 99.9 2.5E-23 8.5E-28 228.2 26.6 242 380-716 94-356 (382)
26 2xm6_A Protein corresponding t 99.9 3.6E-21 1.2E-25 218.4 45.0 347 362-755 59-449 (490)
27 4eqf_A PEX5-related protein; a 99.9 2.4E-23 8.2E-28 225.9 25.2 262 403-745 47-314 (365)
28 2vkp_A BTB/POZ domain-containi 99.9 2.7E-24 9.3E-29 192.4 10.0 102 177-282 4-109 (109)
29 3mkr_A Coatomer subunit epsilo 99.9 6.5E-22 2.2E-26 209.1 28.6 266 394-756 10-279 (291)
30 2xm6_A Protein corresponding t 99.9 3.7E-20 1.3E-24 210.1 44.7 327 381-754 37-407 (490)
31 3u4t_A TPR repeat-containing p 99.9 2.8E-22 9.5E-27 207.5 24.0 244 425-757 5-266 (272)
32 3u4t_A TPR repeat-containing p 99.9 6.5E-22 2.2E-26 204.7 26.6 246 384-716 4-258 (272)
33 2pl2_A Hypothetical conserved 99.9 2E-22 6.9E-27 203.2 22.0 196 382-642 4-212 (217)
34 2pl2_A Hypothetical conserved 99.9 4.1E-22 1.4E-26 201.0 24.0 194 424-706 6-212 (217)
35 3uq3_A Heat shock protein STI1 99.9 1.9E-21 6.4E-26 198.7 29.0 226 381-709 3-237 (258)
36 4eoz_A Speckle-type POZ protei 99.9 1.5E-24 5E-29 204.6 5.0 124 177-304 21-144 (145)
37 2if5_A Zinc finger and BTB dom 99.9 7.8E-24 2.7E-28 192.8 9.6 99 177-278 21-119 (120)
38 3uq3_A Heat shock protein STI1 99.9 3.4E-21 1.2E-25 196.7 30.0 237 423-756 5-257 (258)
39 3hqi_A Speckle-type POZ protei 99.9 1.9E-23 6.4E-28 223.2 13.6 140 177-320 170-309 (312)
40 4a1s_A PINS, partner of inscut 99.9 3.1E-21 1.1E-25 212.4 30.0 290 380-747 45-378 (411)
41 1r29_A B-cell lymphoma 6 prote 99.9 2.1E-23 7.3E-28 191.9 10.2 100 177-280 25-125 (127)
42 3cv0_A Peroxisome targeting si 99.9 4.4E-21 1.5E-25 203.2 28.6 256 424-755 22-295 (327)
43 2ppi_A Gigaxonin; BTB domain, 99.9 1.5E-23 5E-28 197.1 7.5 101 176-279 42-144 (144)
44 2z8h_A Transcription regulator 99.9 1.1E-23 3.9E-28 196.7 6.4 103 177-283 32-134 (138)
45 3sf4_A G-protein-signaling mod 99.9 2.7E-21 9.1E-26 211.5 26.3 273 382-708 8-336 (406)
46 3ro2_A PINS homolog, G-protein 99.9 3.4E-21 1.2E-25 203.8 25.6 286 383-746 5-337 (338)
47 3b84_A Zinc finger and BTB dom 99.9 1.8E-23 6.2E-28 190.0 6.7 97 177-280 20-116 (119)
48 2yy9_A Zinc finger and BTB dom 99.9 3.5E-23 1.2E-27 192.5 6.4 99 177-282 21-119 (135)
49 1buo_A POZ domain, protein (pr 99.9 1.5E-22 5E-27 184.6 9.7 97 177-281 24-120 (121)
50 2vpk_A Myoneurin; transcriptio 99.9 1.6E-22 5.5E-27 182.9 8.6 97 178-279 19-115 (116)
51 2ihc_A Transcription regulator 99.9 1.4E-23 4.8E-28 192.2 1.5 99 177-279 25-123 (124)
52 3vtx_A MAMA; tetratricopeptide 99.9 1.8E-20 6.1E-25 182.6 23.0 177 382-622 4-180 (184)
53 1xnf_A Lipoprotein NLPI; TPR, 99.9 4.1E-21 1.4E-25 198.5 18.0 258 389-735 11-269 (275)
54 3ohu_A Transcription regulator 99.9 3.1E-23 1.1E-27 190.3 1.7 98 177-278 28-125 (125)
55 1ouv_A Conserved hypothetical 99.9 3.3E-19 1.1E-23 185.3 32.1 126 383-538 6-143 (273)
56 2q81_A MIZ-1 protein; BTB/POZ 99.9 1.8E-22 6.2E-27 183.4 6.4 94 178-279 24-117 (119)
57 1ouv_A Conserved hypothetical 99.9 3.7E-19 1.3E-23 184.9 31.8 227 424-747 7-257 (273)
58 2q7f_A YRRB protein; TPR, prot 99.9 3.5E-20 1.2E-24 187.8 22.6 215 474-758 22-239 (243)
59 2vq2_A PILW, putative fimbrial 99.9 3.5E-19 1.2E-23 177.6 29.6 213 470-752 3-222 (225)
60 3m5b_A Zinc finger and BTB dom 99.9 4.6E-22 1.6E-26 180.3 7.2 92 177-280 26-117 (119)
61 2ooe_A Cleavage stimulation fa 99.9 1.4E-18 4.7E-23 199.1 37.9 345 383-754 13-471 (530)
62 2q7f_A YRRB protein; TPR, prot 99.9 6.3E-20 2.1E-24 185.9 23.7 211 381-655 21-233 (243)
63 2ho1_A Type 4 fimbrial biogene 99.9 2.2E-19 7.6E-24 183.5 27.9 214 469-752 30-249 (252)
64 3ga1_A Nucleus accumbens-assoc 99.9 1.6E-22 5.5E-27 186.6 3.8 99 177-281 29-127 (129)
65 3vtx_A MAMA; tetratricopeptide 99.8 1.9E-19 6.5E-24 175.3 24.2 172 473-714 3-176 (184)
66 2ho1_A Type 4 fimbrial biogene 99.8 6.1E-19 2.1E-23 180.2 28.8 211 380-654 34-248 (252)
67 3mkr_A Coatomer subunit epsilo 99.8 4.9E-19 1.7E-23 187.0 28.7 247 384-735 35-288 (291)
68 4abn_A Tetratricopeptide repea 99.8 1.6E-19 5.4E-24 204.2 25.3 215 396-705 81-318 (474)
69 2vq2_A PILW, putative fimbrial 99.8 1.5E-18 5E-23 173.2 28.7 211 380-654 5-221 (225)
70 2ooe_A Cleavage stimulation fa 99.8 2.4E-18 8.3E-23 197.1 34.4 361 361-746 27-497 (530)
71 4i17_A Hypothetical protein; T 99.8 1.7E-18 5.8E-23 174.8 27.2 210 472-757 4-225 (228)
72 3sf4_A G-protein-signaling mod 99.8 1.7E-19 6E-24 197.0 20.8 287 360-699 23-367 (406)
73 3fkc_A Transcriptional regulat 99.8 1.1E-20 3.9E-25 170.5 8.3 89 177-272 27-115 (116)
74 2ond_A Cleavage stimulation fa 99.8 9.6E-19 3.3E-23 185.9 24.4 252 400-753 33-304 (308)
75 3ro2_A PINS homolog, G-protein 99.8 5E-19 1.7E-23 187.0 20.8 277 360-712 19-336 (338)
76 4a1s_A PINS, partner of inscut 99.8 9.1E-19 3.1E-23 192.6 22.9 279 360-714 62-378 (411)
77 4abn_A Tetratricopeptide repea 99.8 6.7E-19 2.3E-23 199.1 22.0 203 465-738 92-318 (474)
78 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.6E-18 8.8E-23 177.4 24.5 225 434-748 16-251 (275)
79 4gyw_A UDP-N-acetylglucosamine 99.8 7E-19 2.4E-23 207.6 22.4 172 379-614 5-176 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.8 5.8E-19 2E-23 208.3 20.8 172 470-711 4-177 (723)
81 3e4b_A ALGK; tetratricopeptide 99.8 7.4E-19 2.5E-23 197.5 19.2 323 383-756 35-400 (452)
82 4i17_A Hypothetical protein; T 99.8 1.5E-17 5E-22 167.9 26.6 134 384-541 8-149 (228)
83 2ond_A Cleavage stimulation fa 99.8 1E-17 3.5E-22 178.0 26.7 216 492-747 33-276 (308)
84 3ulq_A Response regulator aspa 99.8 3.8E-17 1.3E-21 178.7 28.1 232 477-743 105-370 (383)
85 1hz4_A MALT regulatory protein 99.8 1.1E-16 3.9E-21 173.9 31.0 304 381-744 12-352 (373)
86 3nf1_A KLC 1, kinesin light ch 99.8 2.7E-18 9.2E-23 180.3 17.3 169 423-646 27-226 (311)
87 3ulq_A Response regulator aspa 99.8 3E-17 1E-21 179.5 25.5 240 382-710 102-370 (383)
88 3e4b_A ALGK; tetratricopeptide 99.8 2.2E-17 7.5E-22 185.5 24.5 321 382-745 68-425 (452)
89 2pzi_A Probable serine/threoni 99.7 2.8E-17 9.7E-22 194.1 20.7 169 411-647 388-566 (681)
90 3qky_A Outer membrane assembly 99.7 1.3E-16 4.6E-21 164.6 23.2 192 411-650 9-230 (261)
91 3qky_A Outer membrane assembly 99.7 8.1E-17 2.8E-21 166.2 20.3 195 382-634 14-251 (261)
92 3q15_A PSP28, response regulat 99.7 4.3E-16 1.5E-20 170.2 27.1 241 380-709 98-366 (378)
93 3nf1_A KLC 1, kinesin light ch 99.7 2.2E-17 7.4E-22 173.3 15.9 232 380-646 24-309 (311)
94 3urz_A Uncharacterized protein 99.7 3.8E-17 1.3E-21 163.3 16.8 182 383-615 4-189 (208)
95 1qqe_A Vesicular transport pro 99.7 1.1E-16 3.8E-21 168.7 20.4 215 482-753 44-281 (292)
96 3as5_A MAMA; tetratricopeptide 99.7 4.4E-16 1.5E-20 149.7 21.5 169 382-614 7-175 (186)
97 3q15_A PSP28, response regulat 99.7 1.1E-15 3.7E-20 167.0 27.1 232 477-742 103-366 (378)
98 3urz_A Uncharacterized protein 99.7 1.6E-16 5.6E-21 158.7 18.7 180 423-678 4-190 (208)
99 2pzi_A Probable serine/threoni 99.7 1.1E-16 3.6E-21 189.2 19.2 184 469-726 388-582 (681)
100 1xi4_A Clathrin heavy chain; a 99.7 9.6E-14 3.3E-18 167.0 43.9 287 389-735 1055-1378(1630)
101 1qqe_A Vesicular transport pro 99.7 1.3E-16 4.6E-21 168.1 17.5 212 386-649 40-274 (292)
102 3edt_B KLC 2, kinesin light ch 99.7 2E-16 6.8E-21 163.1 16.5 138 472-646 40-200 (283)
103 4ga2_A E3 SUMO-protein ligase 99.7 6.6E-17 2.2E-21 152.8 11.2 144 388-555 2-147 (150)
104 3as5_A MAMA; tetratricopeptide 99.7 2.1E-15 7.1E-20 144.9 21.5 168 423-648 8-177 (186)
105 1xi4_A Clathrin heavy chain; a 99.7 1.4E-13 4.8E-18 165.6 41.5 315 381-754 1103-1441(1630)
106 3dra_A Protein farnesyltransfe 99.7 7.4E-15 2.5E-19 155.1 27.1 227 465-755 57-302 (306)
107 1hz4_A MALT regulatory protein 99.7 8.3E-15 2.8E-19 159.1 28.3 297 361-718 29-359 (373)
108 3dra_A Protein farnesyltransfe 99.7 8.5E-15 2.9E-19 154.7 25.7 226 398-716 48-296 (306)
109 4ga2_A E3 SUMO-protein ligase 99.7 1.6E-16 5.5E-21 150.1 10.3 144 429-630 3-149 (150)
110 2yhc_A BAMD, UPF0169 lipoprote 99.7 8.2E-15 2.8E-19 148.0 23.5 180 423-647 4-216 (225)
111 3edt_B KLC 2, kinesin light ch 99.7 1.5E-15 5E-20 156.5 17.0 123 395-538 13-156 (283)
112 2ast_A S-phase kinase-associat 99.6 3.4E-16 1.2E-20 148.9 10.3 105 184-293 3-136 (159)
113 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.3E-14 4.4E-19 146.5 21.0 175 383-615 4-216 (225)
114 1b89_A Protein (clathrin heavy 99.6 3.6E-16 1.2E-20 170.6 8.5 315 383-756 32-370 (449)
115 3dss_A Geranylgeranyl transfer 99.6 3.2E-13 1.1E-17 143.5 30.3 251 395-716 41-312 (331)
116 2ifu_A Gamma-SNAP; membrane fu 99.6 2.2E-14 7.5E-19 152.2 20.8 243 395-745 3-267 (307)
117 2r5s_A Uncharacterized protein 99.6 4.1E-15 1.4E-19 144.0 13.0 163 386-611 9-172 (176)
118 4gco_A Protein STI-1; structur 99.6 9.3E-15 3.2E-19 133.7 14.3 121 408-552 4-125 (126)
119 4gco_A Protein STI-1; structur 99.6 2.3E-14 7.8E-19 131.1 16.6 117 379-519 9-125 (126)
120 1b89_A Protein (clathrin heavy 99.6 5.3E-16 1.8E-20 169.3 6.6 286 395-739 15-309 (449)
121 3qou_A Protein YBBN; thioredox 99.6 1.9E-14 6.5E-19 151.3 17.5 168 382-611 116-283 (287)
122 2r5s_A Uncharacterized protein 99.6 1.5E-14 5E-19 140.1 14.0 162 424-644 7-173 (176)
123 2vsy_A XCC0866; transferase, g 99.6 3.5E-14 1.2E-18 164.0 19.4 163 396-622 2-169 (568)
124 3qou_A Protein YBBN; thioredox 99.6 8.1E-14 2.8E-18 146.5 19.5 163 424-644 118-284 (287)
125 3gyz_A Chaperone protein IPGC; 99.6 1.1E-14 3.8E-19 137.7 11.3 114 465-618 26-139 (151)
126 2ifu_A Gamma-SNAP; membrane fu 99.6 3.7E-14 1.3E-18 150.5 16.7 209 436-746 4-228 (307)
127 3gyz_A Chaperone protein IPGC; 99.6 1E-14 3.6E-19 137.9 10.6 121 398-542 17-137 (151)
128 3dss_A Geranylgeranyl transfer 99.6 2.7E-12 9.1E-17 136.4 30.1 229 465-749 54-312 (331)
129 2vsy_A XCC0866; transferase, g 99.5 1.4E-13 4.7E-18 158.9 21.6 162 436-655 2-168 (568)
130 3rjv_A Putative SEL1 repeat pr 99.5 6.1E-13 2.1E-17 133.1 21.4 175 401-646 4-199 (212)
131 2fo7_A Synthetic consensus TPR 99.5 5.5E-13 1.9E-17 120.4 18.2 134 384-541 2-135 (136)
132 3rjv_A Putative SEL1 repeat pr 99.5 1.2E-12 4.3E-17 130.8 22.5 172 461-710 6-199 (212)
133 4f3v_A ESX-1 secretion system 99.5 1.1E-13 3.8E-18 143.1 13.9 197 395-655 18-247 (282)
134 1p5q_A FKBP52, FK506-binding p 99.5 4.3E-15 1.5E-19 160.0 3.0 188 392-645 74-295 (336)
135 2c2l_A CHIP, carboxy terminus 99.5 5.9E-14 2E-18 147.1 9.9 194 472-740 1-198 (281)
136 3q7a_A Farnesyltransferase alp 99.5 5.5E-12 1.9E-16 134.6 25.0 226 465-754 78-345 (349)
137 4ajy_C Transcription elongatio 99.5 6.1E-14 2.1E-18 121.5 8.0 81 184-267 4-97 (97)
138 2c2l_A CHIP, carboxy terminus 99.5 8.5E-13 2.9E-17 138.2 18.0 172 506-752 1-175 (281)
139 3q7a_A Farnesyltransferase alp 99.5 7.1E-12 2.4E-16 133.7 25.0 253 393-716 64-340 (349)
140 2fo7_A Synthetic consensus TPR 99.5 3.9E-12 1.3E-16 114.7 19.3 132 425-614 3-134 (136)
141 2vgx_A Chaperone SYCD; alterna 99.5 2.5E-13 8.6E-18 127.8 11.6 117 402-542 6-122 (148)
142 2qfc_A PLCR protein; TPR, HTH, 99.5 5E-12 1.7E-16 132.8 22.8 180 381-612 73-266 (293)
143 1a17_A Serine/threonine protei 99.4 3.4E-12 1.2E-16 120.5 18.7 136 379-538 9-146 (166)
144 4f3v_A ESX-1 secretion system 99.4 3.3E-13 1.1E-17 139.6 12.4 199 428-715 12-243 (282)
145 2vgx_A Chaperone SYCD; alterna 99.4 6.5E-13 2.2E-17 124.9 12.9 112 464-615 10-121 (148)
146 1p5q_A FKBP52, FK506-binding p 99.4 1.6E-13 5.6E-18 147.6 9.8 150 379-611 143-293 (336)
147 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.6E-12 8.8E-17 127.3 17.8 135 381-542 4-154 (213)
148 2xcb_A PCRH, regulatory protei 99.4 8.2E-13 2.8E-17 122.9 11.9 113 463-615 6-118 (142)
149 2xcb_A PCRH, regulatory protei 99.4 9.1E-13 3.1E-17 122.6 12.0 115 404-542 5-119 (142)
150 3upv_A Heat shock protein STI1 99.4 5.3E-12 1.8E-16 114.3 16.2 115 472-626 1-123 (126)
151 4gcn_A Protein STI-1; structur 99.4 1.8E-12 6.3E-17 118.4 12.9 109 473-615 6-115 (127)
152 2e2e_A Formate-dependent nitri 99.4 1.8E-12 6.1E-17 124.9 13.5 126 393-542 20-148 (177)
153 3upv_A Heat shock protein STI1 99.4 8.1E-12 2.8E-16 113.1 16.6 113 383-519 4-122 (126)
154 1a17_A Serine/threonine protei 99.4 2.1E-11 7.1E-16 115.1 18.4 132 422-611 12-145 (166)
155 3u3w_A Transcriptional activat 99.4 1.2E-11 4.2E-16 129.8 18.5 173 388-612 80-266 (293)
156 4e6h_A MRNA 3'-END-processing 99.4 1E-09 3.6E-14 128.0 36.4 351 381-756 64-551 (679)
157 2lni_A Stress-induced-phosphop 99.4 1.3E-11 4.4E-16 111.7 15.9 120 471-630 12-133 (133)
158 2vyi_A SGTA protein; chaperone 99.4 1.8E-11 6.2E-16 109.9 16.7 123 379-525 8-130 (131)
159 2qfc_A PLCR protein; TPR, HTH, 99.4 6E-11 2.1E-15 124.5 23.3 169 424-646 76-268 (293)
160 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.5E-11 8.7E-16 120.1 19.2 145 424-615 7-153 (213)
161 3gw4_A Uncharacterized protein 99.4 1.7E-11 5.7E-16 120.0 17.1 168 485-710 2-178 (203)
162 1dce_A Protein (RAB geranylger 99.3 2.9E-12 1E-16 147.3 13.4 191 465-711 53-270 (567)
163 3mv2_B Coatomer subunit epsilo 99.3 1.8E-10 6.1E-15 120.6 24.7 245 396-716 26-290 (310)
164 3sz7_A HSC70 cochaperone (SGT) 99.3 2.2E-11 7.6E-16 115.9 16.5 114 423-554 11-125 (164)
165 3sz7_A HSC70 cochaperone (SGT) 99.3 1.7E-11 5.7E-16 116.8 15.2 115 381-519 9-123 (164)
166 2vyi_A SGTA protein; chaperone 99.3 1.7E-11 5.8E-16 110.1 14.5 122 470-631 7-130 (131)
167 4gcn_A Protein STI-1; structur 99.3 2.3E-11 7.8E-16 111.0 15.2 105 379-507 4-115 (127)
168 2lni_A Stress-induced-phosphop 99.3 1.9E-11 6.3E-16 110.6 14.4 117 383-523 16-132 (133)
169 4e6h_A MRNA 3'-END-processing 99.3 2.4E-09 8.2E-14 125.0 35.9 218 527-755 327-584 (679)
170 3gw4_A Uncharacterized protein 99.3 7.6E-11 2.6E-15 115.3 19.9 159 434-646 3-178 (203)
171 2e2e_A Formate-dependent nitri 99.3 1.9E-11 6.6E-16 117.6 14.8 111 465-615 34-147 (177)
172 3u3w_A Transcriptional activat 99.3 7.3E-11 2.5E-15 123.8 20.0 166 427-646 79-268 (293)
173 2fbn_A 70 kDa peptidylprolyl i 99.3 3.6E-11 1.2E-15 118.2 16.6 140 379-536 34-184 (198)
174 2fbn_A 70 kDa peptidylprolyl i 99.3 3.8E-12 1.3E-16 125.3 9.1 131 471-641 34-183 (198)
175 1dce_A Protein (RAB geranylger 99.3 1.2E-10 3.9E-15 134.0 22.1 185 398-633 44-244 (567)
176 3q49_B STIP1 homology and U bo 99.3 6.7E-11 2.3E-15 108.1 16.1 106 470-615 4-109 (137)
177 1na0_A Designed protein CTPR3; 99.3 1.3E-10 4.3E-15 103.3 17.4 119 471-629 4-125 (125)
178 1hxi_A PEX5, peroxisome target 99.3 2.9E-11 1E-15 109.4 12.6 101 424-542 18-118 (121)
179 1fs1_B SKP1, cyclin A/CDK2-ass 99.3 6.3E-12 2.2E-16 116.6 8.1 101 184-293 4-131 (141)
180 1na0_A Designed protein CTPR3; 99.3 1.6E-10 5.5E-15 102.6 17.2 116 383-522 9-124 (125)
181 3rkv_A Putative peptidylprolyl 99.3 2.2E-11 7.7E-16 115.6 12.2 116 379-542 7-130 (162)
182 2hr2_A Hypothetical protein; a 99.3 4.4E-11 1.5E-15 112.5 13.8 102 474-615 10-134 (159)
183 1elw_A TPR1-domain of HOP; HOP 99.3 1.4E-10 4.8E-15 102.1 16.5 112 383-518 4-115 (118)
184 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 3.9E-12 1.3E-16 142.8 7.7 121 379-542 264-384 (457)
185 1wao_1 Serine/threonine protei 99.3 3.6E-12 1.2E-16 143.8 6.7 138 381-542 4-154 (477)
186 1elw_A TPR1-domain of HOP; HOP 99.3 2.3E-10 8E-15 100.6 17.1 112 423-552 4-116 (118)
187 1hxi_A PEX5, peroxisome target 99.2 4.9E-11 1.7E-15 107.9 11.8 101 386-510 20-120 (121)
188 2hr2_A Hypothetical protein; a 99.2 6.3E-11 2.2E-15 111.4 12.6 102 423-542 11-135 (159)
189 3q49_B STIP1 homology and U bo 99.2 8.9E-11 3E-15 107.3 13.2 100 424-541 10-109 (137)
190 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 9.4E-11 3.2E-15 131.5 16.1 139 374-536 266-413 (457)
191 3ro3_A PINS homolog, G-protein 99.2 9.6E-11 3.3E-15 109.1 13.4 145 379-541 5-161 (164)
192 3mv2_B Coatomer subunit epsilo 99.2 4.6E-10 1.6E-14 117.5 19.6 187 402-655 85-293 (310)
193 2if4_A ATFKBP42; FKBP-like, al 99.2 2.3E-11 7.8E-16 130.9 9.5 145 380-542 176-332 (338)
194 3rkv_A Putative peptidylprolyl 99.2 2.5E-10 8.7E-15 108.2 15.0 111 423-579 11-130 (162)
195 1zu2_A Mitochondrial import re 99.2 8.7E-11 3E-15 110.3 11.3 91 434-542 13-124 (158)
196 2p1m_A SKP1-like protein 1A; F 99.2 6.8E-12 2.3E-16 119.1 3.7 94 183-283 5-126 (160)
197 2kck_A TPR repeat; tetratricop 99.2 9.4E-11 3.2E-15 102.3 10.7 105 471-615 2-109 (112)
198 2xev_A YBGF; tetratricopeptide 99.2 5E-10 1.7E-14 101.0 15.5 115 386-521 5-122 (129)
199 2dba_A Smooth muscle cell asso 99.2 4E-10 1.4E-14 103.9 15.1 117 383-520 28-144 (148)
200 4b4t_Q 26S proteasome regulato 99.2 2.8E-09 9.6E-14 117.5 24.5 202 393-646 14-247 (434)
201 2kck_A TPR repeat; tetratricop 99.2 1.8E-10 6.2E-15 100.4 11.8 106 413-542 2-110 (112)
202 2dba_A Smooth muscle cell asso 99.2 6.4E-10 2.2E-14 102.5 15.8 113 423-553 28-144 (148)
203 2xev_A YBGF; tetratricopeptide 99.2 6.5E-10 2.2E-14 100.3 15.2 101 424-542 3-109 (129)
204 1ihg_A Cyclophilin 40; ppiase 99.1 2.6E-10 9E-15 124.1 14.8 133 380-530 220-362 (370)
205 1elr_A TPR2A-domain of HOP; HO 99.1 3.9E-10 1.3E-14 101.2 13.5 116 382-522 3-125 (131)
206 3ro3_A PINS homolog, G-protein 99.1 5.9E-10 2E-14 103.6 14.8 139 475-647 9-161 (164)
207 4b4t_Q 26S proteasome regulato 99.1 2.3E-09 8E-14 118.1 20.6 167 476-646 5-206 (434)
208 1wao_1 Serine/threonine protei 99.1 2.5E-11 8.6E-16 136.9 4.5 126 424-607 7-134 (477)
209 2if4_A ATFKBP42; FKBP-like, al 99.1 7.5E-11 2.6E-15 126.8 7.6 136 472-647 176-331 (338)
210 1elr_A TPR2A-domain of HOP; HO 99.1 1.5E-09 5.2E-14 97.2 15.1 114 423-554 4-124 (131)
211 3k9i_A BH0479 protein; putativ 99.1 1.8E-10 6.2E-15 103.0 7.3 99 396-518 3-104 (117)
212 1ihg_A Cyclophilin 40; ppiase 99.0 2.1E-09 7.2E-14 117.0 15.7 114 424-555 224-354 (370)
213 3k9i_A BH0479 protein; putativ 99.0 4.4E-10 1.5E-14 100.4 7.7 89 436-542 3-94 (117)
214 1zu2_A Mitochondrial import re 99.0 1.3E-09 4.3E-14 102.4 10.2 88 398-509 17-125 (158)
215 2kat_A Uncharacterized protein 98.8 3E-08 1E-12 87.8 12.4 78 462-539 6-83 (115)
216 1na3_A Designed protein CTPR2; 98.8 3.2E-08 1.1E-12 83.0 11.8 82 472-553 6-88 (91)
217 2kat_A Uncharacterized protein 98.8 3.7E-08 1.3E-12 87.2 12.7 83 493-579 3-86 (115)
218 2uy1_A Cleavage stimulation fa 98.8 6.4E-06 2.2E-10 92.9 34.0 304 397-738 28-380 (493)
219 2l6j_A TPR repeat-containing p 98.8 5.3E-09 1.8E-13 91.4 5.8 94 423-534 4-103 (111)
220 3ma5_A Tetratricopeptide repea 98.8 2.8E-08 9.7E-13 86.0 10.1 73 470-542 2-74 (100)
221 1na3_A Designed protein CTPR2; 98.8 7.6E-08 2.6E-12 80.6 12.0 83 423-523 9-91 (91)
222 2l6j_A TPR repeat-containing p 98.7 9.9E-09 3.4E-13 89.6 5.8 95 382-500 3-103 (111)
223 3n71_A Histone lysine methyltr 98.7 8.3E-08 2.8E-12 107.8 14.6 129 480-645 314-465 (490)
224 1klx_A Cysteine rich protein B 98.7 1.9E-07 6.5E-12 86.2 14.5 110 465-622 19-136 (138)
225 1hv2_A Elongin C, ELC1; protei 98.7 3.6E-08 1.2E-12 85.1 7.3 80 183-267 5-99 (99)
226 3ly7_A Transcriptional activat 98.7 5.3E-07 1.8E-11 96.0 17.5 149 383-550 196-351 (372)
227 2fnj_C Transcription elongatio 98.6 3.1E-08 1.1E-12 85.1 5.8 80 184-267 3-96 (96)
228 3ma5_A Tetratricopeptide repea 98.6 1.5E-07 5.3E-12 81.3 10.3 72 504-615 2-73 (100)
229 2uy1_A Cleavage stimulation fa 98.6 3.2E-05 1.1E-09 87.1 32.0 207 491-740 195-412 (493)
230 1klx_A Cysteine rich protein B 98.6 4.4E-07 1.5E-11 83.7 13.8 112 489-646 9-128 (138)
231 3n71_A Histone lysine methyltr 98.6 2.6E-07 8.9E-12 103.8 14.3 123 395-538 321-464 (490)
232 2kc7_A BFR218_protein; tetratr 98.6 9.8E-08 3.4E-12 81.8 7.5 89 428-542 5-94 (99)
233 2kc7_A BFR218_protein; tetratr 98.5 1.2E-07 4E-12 81.3 7.3 65 478-542 3-68 (99)
234 3v7d_A Suppressor of kinetocho 98.4 7.2E-07 2.5E-11 84.9 9.1 98 182-283 7-134 (169)
235 3ly7_A Transcriptional activat 98.3 2E-05 6.7E-10 83.9 19.1 143 589-752 202-349 (372)
236 3bee_A Putative YFRE protein; 98.3 2.8E-06 9.6E-11 72.5 10.3 72 471-542 2-76 (93)
237 3u64_A Protein TP_0956; tetrat 98.2 1.2E-05 4.2E-10 82.1 14.0 85 661-745 179-273 (301)
238 3qww_A SET and MYND domain-con 98.2 1.1E-05 3.7E-10 89.1 14.3 101 658-758 311-433 (433)
239 1pc2_A Mitochondria fission pr 98.2 1.1E-05 3.8E-10 74.7 11.4 96 662-757 15-116 (152)
240 3bee_A Putative YFRE protein; 98.1 1.2E-05 4.2E-10 68.5 9.8 74 675-748 2-79 (93)
241 1pc2_A Mitochondria fission pr 98.1 1.5E-05 5E-10 73.9 10.7 85 464-548 21-111 (152)
242 3qwp_A SET and MYND domain-con 98.1 1.5E-05 5.1E-10 88.1 12.8 108 483-627 295-425 (429)
243 3drz_A BTB/POZ domain-containi 98.1 1.3E-05 4.3E-10 70.2 9.5 94 183-280 7-106 (107)
244 1vcb_B Protein (elongin C); tu 98.1 4.1E-06 1.4E-10 73.8 6.0 81 183-267 18-112 (112)
245 3u64_A Protein TP_0956; tetrat 98.1 6.9E-05 2.4E-09 76.6 15.9 79 464-542 186-273 (301)
246 2v5f_A Prolyl 4-hydroxylase su 98.1 3.2E-05 1.1E-09 67.2 11.6 76 474-549 4-87 (104)
247 3qww_A SET and MYND domain-con 98.0 6.3E-05 2.2E-09 83.0 14.6 96 395-511 310-423 (433)
248 3qwp_A SET and MYND domain-con 97.9 5.4E-05 1.8E-09 83.6 12.5 105 395-520 299-424 (429)
249 2v5f_A Prolyl 4-hydroxylase su 97.9 0.00012 3.9E-09 63.6 11.8 76 424-517 6-88 (104)
250 4g26_A Pentatricopeptide repea 97.7 0.0012 4.1E-08 74.3 19.2 157 478-645 29-205 (501)
251 1nzn_A CGI-135 protein, fissio 97.6 0.00034 1.2E-08 62.4 10.7 96 662-757 18-119 (126)
252 4g26_A Pentatricopeptide repea 97.6 0.0071 2.4E-07 68.0 24.2 155 391-611 34-203 (501)
253 1nzn_A CGI-135 protein, fissio 97.3 0.0014 4.6E-08 58.5 10.1 85 464-548 24-114 (126)
254 3drx_A BTB/POZ domain-containi 97.1 0.00078 2.7E-08 64.9 6.9 93 184-280 14-112 (202)
255 1y8m_A FIS1; mitochondria, unk 96.9 0.016 5.6E-07 52.4 13.5 82 676-757 36-122 (144)
256 4h7y_A Dual specificity protei 96.8 0.0084 2.9E-07 54.7 10.9 124 610-756 8-139 (161)
257 3o48_A Mitochondria fission 1 96.6 0.014 5E-07 52.0 10.6 81 677-757 38-123 (134)
258 4h7y_A Dual specificity protei 96.5 0.053 1.8E-06 49.5 13.8 104 470-614 8-125 (161)
259 1y8m_A FIS1; mitochondria, unk 96.5 0.039 1.4E-06 49.9 13.0 76 472-547 36-116 (144)
260 3ffl_A Anaphase-promoting comp 96.5 0.012 4.1E-07 54.7 9.8 59 388-446 25-86 (167)
261 3ffl_A Anaphase-promoting comp 96.4 0.014 4.7E-07 54.4 9.9 111 424-552 21-165 (167)
262 1s1g_A Potassium voltage-gated 96.1 0.0056 1.9E-07 54.6 5.1 88 183-277 14-107 (124)
263 3mkq_A Coatomer beta'-subunit; 96.1 0.39 1.3E-05 56.5 22.7 97 394-535 610-707 (814)
264 3o48_A Mitochondria fission 1 96.0 0.047 1.6E-06 48.8 10.5 74 473-546 38-116 (134)
265 3txn_A 26S proteasome regulato 95.9 0.78 2.7E-05 49.3 21.9 113 583-695 99-236 (394)
266 1nn7_A Potassium channel KV4.2 95.8 0.0035 1.2E-07 54.3 2.2 87 184-277 2-94 (105)
267 3kvt_A Potassium channel prote 95.8 0.008 2.7E-07 52.8 4.5 88 184-275 7-98 (115)
268 3mkq_A Coatomer beta'-subunit; 95.6 1.1 3.7E-05 52.7 23.8 100 484-610 608-708 (814)
269 3kae_A CDC27, possible protein 95.5 1.6 5.4E-05 40.5 19.9 113 398-542 17-147 (242)
270 4gns_B Protein CSD3, chitin bi 95.4 0.1 3.6E-06 60.7 13.5 113 398-535 264-397 (754)
271 2nz0_B Potassium voltage-gated 95.4 0.0078 2.7E-07 54.8 3.0 87 183-276 36-128 (140)
272 3txn_A 26S proteasome regulato 94.9 0.74 2.5E-05 49.4 17.4 192 382-631 18-236 (394)
273 1t1d_A Protein (potassium chan 94.7 0.027 9.4E-07 48.0 4.4 84 184-271 3-90 (100)
274 2ff4_A Probable regulatory pro 93.2 0.93 3.2E-05 48.7 14.1 26 587-612 119-144 (388)
275 1qsa_A Protein (soluble lytic 93.1 12 0.00042 42.5 23.7 217 387-639 218-437 (618)
276 4b4t_P 26S proteasome regulato 92.8 13 0.00044 40.5 25.1 198 397-645 30-248 (445)
277 4b4t_P 26S proteasome regulato 92.6 7.4 0.00025 42.4 20.4 152 489-642 30-204 (445)
278 3mkq_B Coatomer subunit alpha; 92.2 4.3 0.00015 38.1 15.3 45 583-633 34-78 (177)
279 2ff4_A Probable regulatory pro 92.0 1 3.6E-05 48.3 12.5 61 477-537 173-233 (388)
280 1qsa_A Protein (soluble lytic 91.5 22 0.00076 40.3 26.8 154 588-741 219-410 (618)
281 4gns_B Protein CSD3, chitin bi 91.5 1.9 6.6E-05 50.1 14.6 59 583-641 337-397 (754)
282 1zbp_A Hypothetical protein VP 91.4 1.9 6.5E-05 43.3 12.4 59 484-542 6-64 (273)
283 3kae_A CDC27, possible protein 91.2 9.4 0.00032 35.4 18.0 44 701-744 195-240 (242)
284 1ya0_A SMG-7 transcript varian 89.2 1.6 5.4E-05 48.4 10.8 79 477-555 154-233 (497)
285 1zbp_A Hypothetical protein VP 89.0 5.1 0.00017 40.2 13.2 118 393-542 7-133 (273)
286 3mkq_B Coatomer subunit alpha; 89.0 15 0.00051 34.4 18.5 55 474-536 7-61 (177)
287 1ya0_A SMG-7 transcript varian 88.7 2 6.8E-05 47.6 11.2 80 424-521 153-232 (497)
288 2eqx_A Kelch repeat and BTB do 88.6 0.21 7.1E-06 42.9 2.5 33 250-282 8-40 (105)
289 3spa_A Mtrpol, DNA-directed RN 88.5 6.8 0.00023 46.9 15.8 106 509-655 127-242 (1134)
290 2eqx_A Kelch repeat and BTB do 88.4 0.15 5E-06 43.9 1.4 46 280-326 6-51 (105)
291 4b4t_R RPN7, 26S proteasome re 86.3 3.5 0.00012 44.8 11.3 81 565-645 109-198 (429)
292 3spa_A Mtrpol, DNA-directed RN 85.5 9.6 0.00033 45.6 14.9 80 476-555 128-213 (1134)
293 4b4t_S RPN3, 26S proteasome re 85.1 0.82 2.8E-05 50.5 5.4 134 484-647 145-302 (523)
294 4fhn_B Nucleoporin NUP120; pro 80.0 25 0.00085 43.2 16.6 140 480-641 817-964 (1139)
295 4b4t_S RPN3, 26S proteasome re 79.4 18 0.00062 39.8 13.3 67 474-542 230-303 (523)
296 4b4t_R RPN7, 26S proteasome re 78.9 3.2 0.00011 45.1 7.3 104 474-611 130-236 (429)
297 2wpv_A GET4, UPF0363 protein Y 77.1 61 0.0021 33.2 15.9 151 583-739 33-215 (312)
298 4fhn_B Nucleoporin NUP120; pro 75.6 36 0.0012 41.8 16.2 128 469-632 836-988 (1139)
299 4ady_A RPN2, 26S proteasome re 70.9 1.8E+02 0.006 34.7 19.9 135 379-537 372-518 (963)
300 4ady_A RPN2, 26S proteasome re 65.8 2.2E+02 0.0075 33.8 18.9 137 379-537 409-552 (963)
301 3htm_A Speckle-type POZ protei 64.2 5.2 0.00018 36.9 4.0 36 250-285 132-167 (172)
302 2r9r_B Paddle chimera voltage 59.6 8.3 0.00028 42.9 5.2 81 184-271 54-141 (514)
303 3hqi_A Speckle-type POZ protei 57.8 7.1 0.00024 40.2 4.0 36 250-285 272-307 (312)
304 2q9r_A Protein of unknown func 53.1 5.1 0.00017 38.2 1.7 33 95-127 42-74 (200)
305 3ax2_A Mitochondrial import re 52.8 26 0.0009 27.5 5.5 34 721-754 26-59 (73)
306 1wy6_A Hypothetical protein ST 51.4 65 0.0022 28.9 8.3 60 479-538 94-154 (172)
307 3f7c_A Protein of unknown func 51.2 8.2 0.00028 36.8 2.9 33 95-127 41-73 (200)
308 3lvg_A Clathrin heavy chain 1; 49.0 0.0062 2.1E-07 66.1 -21.1 222 472-702 51-285 (624)
309 1vf5_G Protein PET G; photosyn 44.3 5.5 0.00019 26.4 0.3 17 120-137 20-36 (37)
310 2qx5_A Nucleoporin NIC96; mRNA 43.6 2.6E+02 0.0089 31.8 14.3 17 430-446 301-317 (661)
311 3t5x_A PCI domain-containing p 42.9 57 0.002 31.1 7.5 38 380-417 11-48 (203)
312 3hve_A Gigaxonin; ubiquitin, c 41.8 6.8 0.00023 39.0 0.7 34 250-283 131-164 (256)
313 4gq2_M Nucleoporin NUP120; bet 41.6 2.3E+02 0.008 33.7 14.3 107 481-612 816-926 (950)
314 1wy6_A Hypothetical protein ST 35.3 1.1E+02 0.0038 27.3 7.3 41 465-505 115-155 (172)
315 3ax2_A Mitochondrial import re 33.2 72 0.0025 25.0 5.2 34 683-716 21-54 (73)
316 3i3n_A Kelch-like protein 11; 33.1 30 0.001 34.7 3.9 33 250-282 139-171 (279)
317 1om2_A Protein (mitochondrial 31.7 44 0.0015 27.7 3.9 32 684-715 25-56 (95)
318 3lpz_A GET4 (YOR164C homolog); 31.5 4.4E+02 0.015 27.0 29.3 27 506-532 133-159 (336)
319 2w2u_A Hypothetical P60 katani 30.4 57 0.0019 26.2 4.4 20 688-707 28-47 (83)
320 2v6y_A AAA family ATPase, P60 29.6 59 0.002 26.1 4.4 19 689-707 21-39 (83)
321 2w2u_A Hypothetical P60 katani 28.8 90 0.0031 25.0 5.3 29 383-411 19-47 (83)
322 2ijq_A Hypothetical protein; s 28.5 1.9E+02 0.0066 26.3 8.1 58 683-740 36-103 (161)
323 4gq2_M Nucleoporin NUP120; bet 27.6 1.9E+02 0.0065 34.5 10.3 73 467-539 832-927 (950)
324 2plx_B Peptide inhibitor; heli 27.3 26 0.00089 20.5 1.2 14 97-110 11-24 (26)
325 2crb_A Nuclear receptor bindin 26.3 84 0.0029 25.8 4.5 26 681-706 17-42 (97)
326 3mv2_A Coatomer subunit alpha; 26.2 2.7E+02 0.0093 28.5 9.5 25 390-414 121-145 (325)
327 3esl_A Checkpoint serine/threo 25.8 2E+02 0.0068 27.3 7.9 69 472-541 77-147 (202)
328 1q90_G Cytochrome B6F complex 25.0 19 0.00065 23.9 0.4 16 120-136 20-35 (37)
329 2ijq_A Hypothetical protein; s 24.7 2.5E+02 0.0085 25.6 8.1 61 478-538 35-104 (161)
330 3re2_A Predicted protein; meni 23.2 4E+02 0.014 27.7 9.9 83 511-611 237-324 (472)
331 2v6y_A AAA family ATPase, P60 22.7 1.4E+02 0.0049 23.7 5.5 20 392-411 20-39 (83)
332 2crb_A Nuclear receptor bindin 22.5 1.4E+02 0.0046 24.6 5.1 28 383-410 15-42 (97)
333 3re2_A Predicted protein; meni 22.0 3E+02 0.01 28.6 8.7 33 675-707 292-324 (472)
334 3u84_A Menin; MLL, JUND, ledgf 21.8 4.2E+02 0.015 28.0 9.9 82 512-611 260-346 (550)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.7e-33 Score=304.23 Aligned_cols=356 Identities=15% Similarity=0.083 Sum_probs=325.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHH
Q 004336 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 442 (760)
Q Consensus 363 ~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A 442 (760)
+.+...+++.... .++.+.++..+|.+++..|++++|...++.++..+|.+. .++..+|.++...|++++|
T Consensus 16 ~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~------~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 16 EAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA------EAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch------HHHHHHHHHHHHCCCHHHH
Confidence 3444444444333 334456788889999999999999999999999999995 8999999999999999999
Q ss_pred HHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 004336 443 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 522 (760)
Q Consensus 443 ~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~ 522 (760)
+..+ ++++..+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 87 ~~~~------------------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 87 IEHY------------------RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT
T ss_pred HHHH------------------HHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcC
Q 004336 523 SHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCG 597 (760)
Q Consensus 523 g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g 597 (760)
|++++|+..|+++++.+|++ .++..+|.++... +.+++|+..+++++.. ..++..+|.++...|
T Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-----------GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-----------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 99999999999999999999 9999999999998 8999999999988433 889999999999999
Q ss_pred CHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHH
Q 004336 598 QLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMV 671 (760)
Q Consensus 598 ~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~ka 671 (760)
++++|+..|++++..+|. .++..+|.++...|++++|+..++++++..|.....+..++ ..|++++|+..++++
T Consensus 218 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999998776 88999999999999999999999999999998887766553 459999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 672 TQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 672 l~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l-~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
++.+|.++.++..+|.++...|++++|+..++++++..|++...+. .+.++...|++++|+..|+++++++|++++++.
T Consensus 298 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~ 377 (388)
T 1w3b_A 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 9999999999999999999999999999999999999999987774 489999999999999999999999999999887
Q ss_pred HHHHhh
Q 004336 751 LHSRVY 756 (760)
Q Consensus 751 ~~~r~~ 756 (760)
.+..+.
T Consensus 378 ~lg~~~ 383 (388)
T 1w3b_A 378 NMGNTL 383 (388)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 766553
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.6e-32 Score=297.60 Aligned_cols=332 Identities=16% Similarity=0.085 Sum_probs=308.9
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 468 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al 468 (760)
+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|..++ .+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~~~~a~~~~------------------~~a~ 60 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNT------GVLLLLSSIHFQCRRLDRSAHFS------------------TLAI 60 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHH
Confidence 34555666699999999999999999995 88999999999999999999999 9999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHH
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL 547 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~ 547 (760)
..+|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+. .++..
T Consensus 61 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 140 (388)
T 1w3b_A 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHH
Q 004336 548 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGL 621 (760)
Q Consensus 548 la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~L 621 (760)
+|.++... +.+++|++.+.+.+.. ..++.++|.++...|++++|+..|+++++.+|. .++..+
T Consensus 141 l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 209 (388)
T 1w3b_A 141 LGNLLKAL-----------GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209 (388)
T ss_dssp HHHHHHTT-----------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHc-----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999998 9999999999988443 789999999999999999999999999998877 899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 697 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~e 697 (760)
|.++...|++++|+..+++++...|++..++..++ ..|++++|+..++++++.+|+++.++..+|.++...|++++
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999998877766553 45999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 698 AIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 698 Ai~~l~kal~~~p~~~~~~l-~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
|+..|+++++..|++...+. .+.++...|++++|+..|+++++.+|+++.++..+..+
T Consensus 290 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999999999987774 48899999999999999999999999998876555443
No 3
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=3.5e-29 Score=268.95 Aligned_cols=310 Identities=14% Similarity=0.070 Sum_probs=282.3
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++.+|..++..|++++|+..|++++..+|+++ .++..+|.++...|++++|+.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~---------------- 60 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY------IAYYRRATVFLAMGKSKAALPDL---------------- 60 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH------HHHHHHHHHHHHccCHHHHHHHH----------------
Confidence 45678888999999999999999999999999995 89999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHH------------HHHHHHCCCHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA---SDHERLVYE------------GWILYDTSHCEE 527 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p---~~~~a~~~L------------g~i~~~~g~~ee 527 (760)
.+++..+|++..+++.+|.++...|++++|+..|+++++..| ++..++..+ |.++...|++++
T Consensus 61 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 61 --TKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp --HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 999999999999999999999999999999999999999999 888888877 789999999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 528 GLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYS 607 (760)
Q Consensus 528 Al~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~ 607 (760)
|+..++++++..|++ ..++..+|.++...|++++|+..|+
T Consensus 139 A~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~ 178 (359)
T 3ieg_A 139 AITFLDKILEVCVWD----------------------------------------AELRELRAECFIKEGEPRKAISDLK 178 (359)
T ss_dssp HHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc----------------------------------------hHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999988 7788889999999999999999999
Q ss_pred HHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHH----------------HHHhcCCHHHHHHHHH
Q 004336 608 NALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE----------------KRSEYCDRELTRADLE 669 (760)
Q Consensus 608 ~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~----------------~~~~~~~~~~A~~~l~ 669 (760)
++++..|. .++..+|.++...|++++|+..++++++..|+....+. .....|++++|+..++
T Consensus 179 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 258 (359)
T 3ieg_A 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258 (359)
T ss_dssp HHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99997665 88999999999999999999999999999997765432 1234589999999999
Q ss_pred HHHhhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004336 670 MVTQLDPLRVY----PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 670 kal~l~p~~~~----~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l-~a~~~~~~g~~~~A~~~~~~aL~l~P~ 744 (760)
+++..+|+++. .+..+|.++...|++++|+..+++++...|+++..+. .+.++...|++++|+..|+++++++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999874 4667999999999999999999999999999987774 499999999999999999999999999
Q ss_pred cHHHHHHHHHhh
Q 004336 745 DQEMLELHSRVY 756 (760)
Q Consensus 745 ~~~~l~~~~r~~ 756 (760)
++.+...+.++.
T Consensus 339 ~~~~~~~l~~~~ 350 (359)
T 3ieg_A 339 DQQIREGLEKAQ 350 (359)
T ss_dssp CHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 999888777664
No 4
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=1.4e-28 Score=274.38 Aligned_cols=313 Identities=14% Similarity=0.071 Sum_probs=263.5
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
.+..+..+..+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~------------ 83 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY------IAYYRRATVFLAMGKSKAALPDL------------ 83 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH------HHHHHHHHHHHHCCCHHHHHHHH------------
Confidence 456678888999999999999999999999999999995 89999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHH------------HHHHHHCC
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYE------------GWILYDTS 523 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~---~a~~~L------------g~i~~~~g 523 (760)
++++..+|++..+++.+|.+|...|++++|+..|+++++.+|++. .++..+ |.++...|
T Consensus 84 ------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 84 ------TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157 (450)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999988 776655 66699999
Q ss_pred CHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHH
Q 004336 524 HCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAA 603 (760)
Q Consensus 524 ~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~ 603 (760)
++++|+..|+++++..|.+ ..++..+|.+|...|++++|+
T Consensus 158 ~~~~A~~~~~~~~~~~~~~----------------------------------------~~~~~~l~~~~~~~g~~~~A~ 197 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVWD----------------------------------------AELRELRAECFIKEGEPRKAI 197 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCGGGGH
T ss_pred CHHHHHHHHHHHHHhCCCC----------------------------------------hHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999988 667777788888888888888
Q ss_pred HHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHH----------------HHHhcCCHHHHH
Q 004336 604 DCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE----------------KRSEYCDRELTR 665 (760)
Q Consensus 604 ~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~----------------~~~~~~~~~~A~ 665 (760)
..|+++++.+|. .++..+|.++...|++++|+..+++++...|+....+. .....|++++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277 (450)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888888776554 77778888888888888888888888887776655432 223447888888
Q ss_pred HHHHHHHhhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 666 ADLEMVTQLDPLRVY----PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 666 ~~l~kal~l~p~~~~----~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
..|++++..+|.++. .+..+|.++...|++++|+..+++++...|++...+ ..+.++...|++++|+..|+++++
T Consensus 278 ~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 278 SKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 888888888888743 677888888888888888888888888888877666 447778888888888888888888
Q ss_pred cCCCcHHHHHHHHHh
Q 004336 741 VDPNDQEMLELHSRV 755 (760)
Q Consensus 741 l~P~~~~~l~~~~r~ 755 (760)
++|+++.+...+.++
T Consensus 358 ~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 358 HNENDQQIREGLEKA 372 (450)
T ss_dssp TSSSCHHHHHHHHHH
T ss_pred hCcchHHHHHHHHHH
Confidence 888888877666644
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=3e-28 Score=278.02 Aligned_cols=336 Identities=14% Similarity=0.092 Sum_probs=263.4
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+.+++.+|..++..|++++|+..|++++..+|+++ .++..+|.++...|++++|+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~--------------- 82 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP------VFYSNISACYISTGDLEKVIEFT--------------- 82 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc------HHHHHHHHHHHHcCCHHHHHHHH---------------
Confidence 455556666666666666666666666666666663 56666666666666666666666
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH---------------------------------------------
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR--------------------------------------------- 496 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~--------------------------------------------- 496 (760)
++++..+|++..+++.+|.++...|++++|+.
T Consensus 83 ---~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 159 (537)
T 3fp2_A 83 ---TKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ 159 (537)
T ss_dssp ---HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------C
T ss_pred ---HHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 66666666666666666666666665555554
Q ss_pred ----------------------------------------------------------------HHHHHHHhCCCcHH--
Q 004336 497 ----------------------------------------------------------------SLQLARQHAASDHE-- 510 (760)
Q Consensus 497 ----------------------------------------------------------------~l~kal~~~p~~~~-- 510 (760)
.|+++++.+|++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~ 239 (537)
T 3fp2_A 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239 (537)
T ss_dssp CCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH
T ss_pred ccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhh
Confidence 45555566677644
Q ss_pred -----HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH---
Q 004336 511 -----RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--- 582 (760)
Q Consensus 511 -----a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--- 582 (760)
++..+|.++...|++++|+..|++++..+|+..++..+|.++... +.+++|+..+.+.+..
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~ 308 (537)
T 3fp2_A 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADK-----------ENSQEFFKFFQKAVDLNPE 308 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCS-----------SCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-----------cCHHHHHHHHHHHhccCCC
Confidence 577788999999999999999999999999888888999998888 8888888888887433
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH---
Q 004336 583 -GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS--- 656 (760)
Q Consensus 583 -~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~--- 656 (760)
..++..+|.++...|++++|+..|+++++.+|. .++..+|.++...|++++|+..++++++..|....++..++
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 388 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 789999999999999999999999999998776 89999999999999999999999999999998776665543
Q ss_pred -hcCCHHHHHHHHHHHHhhCCCChHH------HHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCcHHHHH-H
Q 004336 657 -EYCDRELTRADLEMVTQLDPLRVYP------YRYRAAVLMDS----------HKENEAIAELSRAIAFKADLHLLHL-R 718 (760)
Q Consensus 657 -~~~~~~~A~~~l~kal~l~p~~~~~------~~~La~~~~~~----------g~~~eAi~~l~kal~~~p~~~~~~l-~ 718 (760)
..|++++|+..++++++.+|.+... +..+|.++... |++++|+..|++++...|++...+. .
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 468 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4589999999999999988765543 56678889998 9999999999999999999987774 4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004336 719 AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 719 a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
+.++...|++++|+..|+++++++|++++.....
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999999999876543
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.9e-28 Score=282.45 Aligned_cols=340 Identities=12% Similarity=0.038 Sum_probs=304.6
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHH------------------------------
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHML------------------------------ 431 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~------------------------------ 431 (760)
.+..++.+|..+...|++++|+..|+++++.+|++. .++..++.
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY------EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh------HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 567889999999999999999999999999999985 55554543
Q ss_pred --------HHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 432 --------VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 432 --------l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.+...|++++|..++ .+++.. |.+..+++.+|.+|.+.|++++|+..|+++++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~------------------~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYL------------------SSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHH------------------HTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHH------------------HHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333456666666666 666665 78899999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
.+|.+..++..++.++...|++++|+..++++++..|++ .++..++.++... |.+++|++.+.+.+..
T Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV-----------NKISEARRYFSKSSTM 402 (597)
T ss_dssp HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998 9999999999998 9999999999988432
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH
Q 004336 583 ----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 656 (760)
Q Consensus 583 ----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 656 (760)
..+|+.+|.+|...|++++|+..|+++++..|. .++..+|.+|...|++++|++.|+++++..|.+...+..++
T Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482 (597)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 789999999999999999999999999997765 89999999999999999999999999999998887776653
Q ss_pred ----hcCCHHHHHHHHHHHHhh------CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHH
Q 004336 657 ----EYCDRELTRADLEMVTQL------DPLR-VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEH 724 (760)
Q Consensus 657 ----~~~~~~~A~~~l~kal~l------~p~~-~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~ 724 (760)
..|++++|+..|+++++. +|+. ..+|..+|.++...|++++|+..++++++..|++...+ ..+.++..
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 459999999999999998 6665 68999999999999999999999999999999988777 45889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 725 TGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 725 ~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
.|++++|.+.|+++++++|+++.+...+.++..
T Consensus 563 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999988887754
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.9e-28 Score=272.03 Aligned_cols=336 Identities=13% Similarity=0.060 Sum_probs=231.3
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+.+++..|..++..|+|++|+..|++++..+|+ + .++..+|.++...|++++|+..+
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~------~~~~~la~~~~~~g~~~~A~~~~------------- 62 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-P------VFYSNLSACYVSVGDLKKVVEMS------------- 62 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-H------HHHHHHHHHHHHHTCHHHHHHHH-------------
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-H------HHHHhHHHHHHHHhhHHHHHHHH-------------
Confidence 356788899999999999999999999999999994 3 88999999999999999999999
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------------
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS-------------------------------- 507 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~-------------------------------- 507 (760)
.+++..+|++..+++.+|.++...|++++|+..|++++...|.
T Consensus 63 -----~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (514)
T 2gw1_A 63 -----TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT 137 (514)
T ss_dssp -----HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------
T ss_pred -----HHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988763
Q ss_pred -----------------------------------------------cHHHHHHHHHHHHH---CCCHHHHHHHHHHHHh
Q 004336 508 -----------------------------------------------DHERLVYEGWILYD---TSHCEEGLRKAEESIQ 537 (760)
Q Consensus 508 -----------------------------------------------~~~a~~~Lg~i~~~---~g~~eeAl~~~~~al~ 537 (760)
+..++..+|.+++. .|++++|+..|+++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp -------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 36777888888886 8999999999999999
Q ss_pred -----h--c-------CCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCH
Q 004336 538 -----M--K-------RSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQL 599 (760)
Q Consensus 538 -----l--~-------p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~ 599 (760)
+ + |.. .+++.+|.++... +.+++|+..+.+.+.. ..++..+|.++...|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK-----------NDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDS 286 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS-----------SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCC
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCH
Confidence 5 2 444 7888899988887 6666666666655211 45555555555555555
Q ss_pred HHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH---------------------
Q 004336 600 DLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS--------------------- 656 (760)
Q Consensus 600 ~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~--------------------- 656 (760)
++|+..|+++++..|. .++..+|.++...|++++|+..++++++..|.....+..++
T Consensus 287 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 366 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366 (514)
T ss_dssp TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555554433 45555555555555555555555555555554433333222
Q ss_pred -----------------hcCCHHHHHHHHHHHHhhCCCChH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHcCC
Q 004336 657 -----------------EYCDRELTRADLEMVTQLDPLRVY------PYRYRAAVLMD---SHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 657 -----------------~~~~~~~A~~~l~kal~l~p~~~~------~~~~La~~~~~---~g~~~eAi~~l~kal~~~p 710 (760)
..|++++|+..+++++..+|.+.. ++..+|.++.. .|++++|+..+++++...|
T Consensus 367 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 367 KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 224455555555555554444432 45555555555 5555555555555555555
Q ss_pred CcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004336 711 DLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 711 ~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~ 751 (760)
++...+ ..+.++...|++++|+..|+++++++|++++++..
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 544443 22555555555555555555555555555554443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.1e-28 Score=272.34 Aligned_cols=334 Identities=12% Similarity=0.060 Sum_probs=287.0
Q ss_pred CChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH
Q 004336 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 440 (760)
Q Consensus 361 ~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~ 440 (760)
..+.+...+++...... .+.++..+|.+++..|++++|+..|+++++.+|++. .++..+|.++...|+++
T Consensus 21 ~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS------KVLLRRASANEGLGKFA 90 (514)
T ss_dssp CHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH------HHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH------HHHHHHHHHHHHHhhHH
Confidence 45566666666665532 367889999999999999999999999999999995 89999999999999999
Q ss_pred HHHHHHhhhcccc-------------------------------------------------------------------
Q 004336 441 IADCWLQLYDRWS------------------------------------------------------------------- 453 (760)
Q Consensus 441 ~A~~~l~l~~~~~------------------------------------------------------------------- 453 (760)
+|+..+.......
T Consensus 91 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 9998775331111
Q ss_pred -------------------------------ccCCcCcHHHHHHHHH-----h--C-------CCcHHHHHHHHHHHHHc
Q 004336 454 -------------------------------SVDDIGSLSVIYQMLE-----S--D-------APKGVLYFRQSLLLLRL 488 (760)
Q Consensus 454 -------------------------------~~~d~~sl~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~ 488 (760)
..+...++..+.+++. . + |.++.+++.+|.++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 0011123445677777 4 3 55678899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhh
Q 004336 489 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVS 567 (760)
Q Consensus 489 g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~ 567 (760)
|++++|+..|+++++..|. ..++..+|.++...|++++|+..+++++..+|.+ .++..+|.++... +
T Consensus 251 ~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~ 318 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL-----------Q 318 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT-----------T
T ss_pred CCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh-----------C
Confidence 9999999999999999999 9999999999999999999999999999999998 9999999999998 8
Q ss_pred HHHHHHhhhHhhcc--H--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 568 LLEDALKCPSDRLR--K--GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 641 (760)
Q Consensus 568 ~leeAl~~~~~~l~--~--~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~a 641 (760)
.+++|+..+.+.+. + ..++..+|.++...|++++|+..|+++++..|. .++..+|.++...|++++|+..++++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888888732 2 789999999999999999999999999997765 89999999999999999999999999
Q ss_pred HHhccCcHH------HHHH----HHh---cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 642 IKKARNNAS------AYEK----RSE---YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 642 l~~~~~~~~------~~~~----~~~---~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
++..|.... .+.. ... .|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999886532 3332 235 789999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHH
Q 004336 709 KADLHLLH 716 (760)
Q Consensus 709 ~p~~~~~~ 716 (760)
.|+++..+
T Consensus 479 ~~~~~~~~ 486 (514)
T 2gw1_A 479 ARTMEEKL 486 (514)
T ss_dssp CSSHHHHH
T ss_pred ccccHHHH
Confidence 99988765
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.8e-26 Score=264.56 Aligned_cols=373 Identities=13% Similarity=0.039 Sum_probs=289.8
Q ss_pred CCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH
Q 004336 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 439 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~ 439 (760)
...+.+...++++.....+ ...++.+|.++...|++++|+..|++++.. |.++ .++..++.++...|++
T Consensus 98 g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 98 QQYKCAAFVGEKVLDITGN----PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSS------ACRYLAAFCLVKLYDW 166 (597)
T ss_dssp TCHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCH------HHHHHHHHHHHHTTCH
T ss_pred cCchHHHHHHHHHHhhCCC----chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccch------hHHHHHHHHHHHHhhH
Confidence 3445566666666543322 145678899999999999999999998765 4453 7899999999999999
Q ss_pred HHHHHHHhhhcccc--------------------------------ccCCcCcHHHHHHHHHhCCCcHHHHHHHHH----
Q 004336 440 TIADCWLQLYDRWS--------------------------------SVDDIGSLSVIYQMLESDAPKGVLYFRQSL---- 483 (760)
Q Consensus 440 ~~A~~~l~l~~~~~--------------------------------~~~d~~sl~~~~~al~~~p~~~~~~~~la~---- 483 (760)
++|+..+....... ..+...++..+++++..+|++..++..++.
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 246 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLL 246 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcc
Confidence 99999994211100 000001233344444444444444443322
Q ss_pred ----------------------------------HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 004336 484 ----------------------------------LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 484 ----------------------------------~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
.|.+.|++++|++.|+++++. |.+..++..+|.++...|++++|+
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHH
Confidence 122344444455555444444 455667778888899999999999
Q ss_pred HHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHH
Q 004336 530 RKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAAD 604 (760)
Q Consensus 530 ~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~ 604 (760)
..|+++++.+|++ .++..++.++... +.+++|...+.+.+.. ..+++.+|.+|...|++++|+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 326 AITTKILEIDPYNLDVYPLHLASLHES-----------GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHHHHHHHHCTTCCTTHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999988 8888999998888 8889999988887432 7899999999999999999999
Q ss_pred HHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH----HhcCCHHHHHHHHHHHHhhCCCC
Q 004336 605 CYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----SEYCDRELTRADLEMVTQLDPLR 678 (760)
Q Consensus 605 ~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~----~~~~~~~~A~~~l~kal~l~p~~ 678 (760)
.|+++++.+|. .++..++.+|...|++++|++.|+++++..|++...+..+ ...|++++|+..|+++++.+|.+
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999997765 7999999999999999999999999999999776665544 34599999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCc-HHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 679 VYPYRYRAAVLMDSHKENEAIAELSRAIAF------KADL-HLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 679 ~~~~~~La~~~~~~g~~~eAi~~l~kal~~------~p~~-~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
+.+|..+|.++.+.|++++|++.|+++++. .|+. ...+ ..+.++...|++++|++.|+++++.+|+++.++.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999999988 5553 3344 4588888899999999999999999999998876
Q ss_pred HHHHh
Q 004336 751 LHSRV 755 (760)
Q Consensus 751 ~~~r~ 755 (760)
.+..+
T Consensus 555 ~l~~~ 559 (597)
T 2xpi_A 555 AIALV 559 (597)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1.1e-25 Score=251.04 Aligned_cols=319 Identities=15% Similarity=0.126 Sum_probs=276.6
Q ss_pred CCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH
Q 004336 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 439 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~ 439 (760)
...+.+...+++..+. .+..+.+++.+|.++...|++++|+..|+++++.+|++. .++..+|.++...|++
T Consensus 40 g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 40 GQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT------AARLQRGHLLLKQGKL 110 (450)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCCH
Confidence 3455666666665544 234577889999999999999999999999999999995 8999999999999999
Q ss_pred HHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh
Q 004336 440 TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQ------------SLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 440 ~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
++|+.++ ++++..+|.+. .++..+ |..+...|++++|+..|+++++.
T Consensus 111 ~~A~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 111 DEAEDDF------------------KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172 (450)
T ss_dssp HHHHHHH------------------HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------HHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999 99999999988 776655 66799999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHH
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 584 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~ 584 (760)
.|.+..++..+|.++...|++++|+..|+++++.+|++ ..
T Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------------------------------~~ 212 (450)
T 2y4t_A 173 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN----------------------------------------TE 212 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC----------------------------------------HH
T ss_pred CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------------------------HH
Confidence 99999999999999999999999999999999999988 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhccCcHH
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGL------------ARVHFLKNNKTTAYEEMTKLIKKARNNAS 650 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~L------------a~~~~~~g~~~~A~~~l~~al~~~~~~~~ 650 (760)
++..+|.+|...|++++|+..|++++...|. ..+..+ |.++...|++++|+..|+++++..|.+..
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 292 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE 292 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH
Confidence 8899999999999999999999999987666 444333 99999999999999999999999997643
Q ss_pred ----HHHH----HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-H--
Q 004336 651 ----AYEK----RSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-A-- 719 (760)
Q Consensus 651 ----~~~~----~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a-- 719 (760)
.+.. ....|++++|+..++++++.+|+++.+|..+|.++...|++++|+..|+++++..|++...+.. +
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 3322 2355899999999999999999999999999999999999999999999999999999877622 3
Q ss_pred ----------HHHHHcC-----CHHHHHHHHHH-HHhcCCCc
Q 004336 720 ----------AFHEHTG-----DVLGALRDCRA-ALSVDPND 745 (760)
Q Consensus 720 ----------~~~~~~g-----~~~~A~~~~~~-aL~l~P~~ 745 (760)
.+|..+| +.+++.+.|++ +++..|++
T Consensus 373 ~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 373 QRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 3344445 66788999996 88888874
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=4.5e-26 Score=242.13 Aligned_cols=286 Identities=14% Similarity=0.066 Sum_probs=245.2
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
.+...|..++..|++++|+..|++++..+|.+. .++..++.++...|++++|..++
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~------------------ 79 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA------SCLPVHIGTLVELNKANELFYLS------------------ 79 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------TTHHHHHHHHHHHTCHHHHHHHH------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh------hhHHHHHHHHHHhhhHHHHHHHH------------------
Confidence 344556666666799999999999999999996 78888999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLN-CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g-~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
.+++..+|.++.+++.+|.++...| ++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|+.
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~- 158 (330)
T 3hym_B 80 HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC- 158 (330)
T ss_dssp HHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc-
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGL 621 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~L 621 (760)
..++..+|.++...|++++|+..|+++++..|. .++..+
T Consensus 159 ---------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 199 (330)
T 3hym_B 159 ---------------------------------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199 (330)
T ss_dssp ---------------------------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 567788999999999999999999999998776 899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
|.++...|++++|+..++++++..+.... ....|..+.++..+|.++...|++++|+..
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGN---------------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------cccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999988877642110 000145567777888888888888888888
Q ss_pred HHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 702 LSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 702 l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
+++++...|++...+ ..+.++...|++++|+..|+++++++|+++.++..+..+
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 313 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence 888888888777665 337777777888888888888888888888777665553
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=9.4e-25 Score=234.27 Aligned_cols=290 Identities=14% Similarity=0.080 Sum_probs=258.2
Q ss_pred CCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH
Q 004336 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 439 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~ 439 (760)
+..+.+...+++..... +..+.+++.+|.++...|++++|+..|++++..+|++. .++..+|.++...|++
T Consensus 17 g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 17 GQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT------AARLQRGHLLLKQGKL 87 (359)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc------hHHHHHHHHHHHcCCh
Confidence 34556666666665543 34467889999999999999999999999999999995 8999999999999999
Q ss_pred HHHHHHHhhhccccccCCcCcHHHHHHHHHhCC---CcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh
Q 004336 440 TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQ------------SLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 440 ~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
++|+.++ ++++..+| ++..++..+ |.++...|++++|+..++++++.
T Consensus 88 ~~A~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 88 DEAEDDF------------------KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp HHHHHHH------------------HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999 99999999 888888877 78999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHH
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 584 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~ 584 (760)
.|.++.++..+|.++...|++++|+..+++++...|++ ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------~~ 189 (359)
T 3ieg_A 150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN----------------------------------------TE 189 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC----------------------------------------HH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------------------------HH
Confidence 99999999999999999999999999999999999998 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhccCcHH
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAH------------QGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 650 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~------------~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~ 650 (760)
++..+|.++...|++++|+..|+++++..|. .++ ..+|.++...|++++|+..++++++..|....
T Consensus 190 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 8889999999999999999999999997665 322 34588899999999999999999999997653
Q ss_pred HH--------HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Q 004336 651 AY--------EKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 651 ~~--------~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~ 716 (760)
.. ......|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|++..++
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 32 1223568999999999999999999999999999999999999999999999999999998776
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.1e-24 Score=244.74 Aligned_cols=337 Identities=11% Similarity=0.005 Sum_probs=249.9
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcc---hhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRM---FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 456 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~---~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~ 456 (760)
...+..|..+|.++..+|++++|++.|++++++.+.... -.....++..+|.++..+|++++|..++
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~---------- 117 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV---------- 117 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHH----------
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHH----------
Confidence 345677888999999999999999999999987321100 0011367889999999999999999999
Q ss_pred CcCcHHHHHHHHHh--------CCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HCC
Q 004336 457 DIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRL--NCPEAAMRSLQLARQHAASDHERLVYEGWILY---DTS 523 (760)
Q Consensus 457 d~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~--g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~---~~g 523 (760)
++++.. .+..+.++..+|.++... +++++|+.+|+++++++|++++++..+|.++. ..+
T Consensus 118 --------~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~ 189 (472)
T 4g1t_A 118 --------DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWP 189 (472)
T ss_dssp --------HHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSC
T ss_pred --------HHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCch
Confidence 676664 245688899999877765 47999999999999999999999999998855 467
Q ss_pred CHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCC
Q 004336 524 HCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQ 598 (760)
Q Consensus 524 ~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~ 598 (760)
+.++|+..++++++++|++ .++..+|..+....... +.+++|.+.+++++.. ..++.++|.+|...|+
T Consensus 190 ~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~-------~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 190 PSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG-------EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp CCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc
Confidence 8899999999999999999 77777777766542222 4455566666555322 6777788888888888
Q ss_pred HHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 004336 599 LDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDP 676 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p 676 (760)
+++|+..|+++++..|. .++..+|.+|...+....+...... +.... .....++|+..++++++++|
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM--------YGKRK---LLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC--------------CHHH---HHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH--------HHHHH---HHhhHHHHHHHHHHHhhcCC
Confidence 88888888888877666 6777777777654332221111100 00000 11235788999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH---H--HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004336 677 LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLL---H--LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 677 ~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~---~--l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~ 751 (760)
....++..+|.++...|++++|+..|++++...|++... + ++.......|++++|+..|+++++++|++.+....
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~ 411 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 999999999999999999999999999999998877633 2 23344556799999999999999998887765444
Q ss_pred H
Q 004336 752 H 752 (760)
Q Consensus 752 ~ 752 (760)
+
T Consensus 412 ~ 412 (472)
T 4g1t_A 412 K 412 (472)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3.9e-25 Score=252.19 Aligned_cols=335 Identities=11% Similarity=0.050 Sum_probs=281.3
Q ss_pred CChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH
Q 004336 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 440 (760)
Q Consensus 361 ~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~ 440 (760)
..+.+...+++.... .++.+.+++.+|.++...|++++|+..|++++..+|++. .++..+|.++...|+++
T Consensus 40 ~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 40 NFNEAIKYYQYAIEL---DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS------KALLRRASANESLGNFT 110 (537)
T ss_dssp CCC-CHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH------HHHHHHHHHHHHcCCHH
Confidence 344555566665554 234568899999999999999999999999999999995 89999999999999999
Q ss_pred HHHHHHhhhcccccc-----------------------------------------------------------------
Q 004336 441 IADCWLQLYDRWSSV----------------------------------------------------------------- 455 (760)
Q Consensus 441 ~A~~~l~l~~~~~~~----------------------------------------------------------------- 455 (760)
+|+..++........
T Consensus 111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 999877322100000
Q ss_pred --------------------------CCcCcHHHHHHHHHhCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 456 --------------------------DDIGSLSVIYQMLESDAPKGV-------LYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 456 --------------------------~d~~sl~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
.-..++..+++++..+|++.. +++.+|.++...|++++|+..|++++
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 001234457778888898855 57788899999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 581 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~ 581 (760)
+.+|+ ..++..+|.++...|++++|+..+++++..+|++ .++..+|.++... +.+++|+..+.+.+.
T Consensus 271 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 271 NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL-----------QDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHH
T ss_pred hcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999 9999999999998 999999999998844
Q ss_pred H----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHH-----
Q 004336 582 K----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS----- 650 (760)
Q Consensus 582 ~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~----- 650 (760)
. ..++..+|.++...|++++|+..|+++++..|. .++..+|.++...|++++|+..++++++..|....
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 3 789999999999999999999999999998776 89999999999999999999999999999873221
Q ss_pred --H---HHHHHhc----------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Q 004336 651 --A---YEKRSEY----------CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLL 715 (760)
Q Consensus 651 --~---~~~~~~~----------~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~ 715 (760)
. ....... |++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|+....
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 1 1112233 888999999999999999999999999999999999999999999999999998866
Q ss_pred H
Q 004336 716 H 716 (760)
Q Consensus 716 ~ 716 (760)
.
T Consensus 499 ~ 499 (537)
T 3fp2_A 499 L 499 (537)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=1.1e-25 Score=243.64 Aligned_cols=303 Identities=11% Similarity=0.035 Sum_probs=248.2
Q ss_pred HHhcCCHHHHHH-HHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC
Q 004336 393 RLLRKEYDEAEH-LFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 471 (760)
Q Consensus 393 ~l~~g~~~eA~~-~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~ 471 (760)
+...|+|++|+. .|++++...|+++.. ...+++.+|.++...|++++|+.++ .+++..+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~------------------~~al~~~ 94 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLR--DHPQPFEEGLRRLQEGDLPNAVLLF------------------EAAVQQD 94 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTT--TCSSHHHHHHHHHHTTCHHHHHHHH------------------HHHHHSC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCccc--chHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhC
Confidence 344459999999 999999999887521 1256888999999999999999999 9999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY 550 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~ 550 (760)
|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|++ ..+..++.
T Consensus 95 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 174 (368)
T 1fch_A 95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 32222211
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHF 626 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~ 626 (760)
.... ......+..+|.++ ..|++++|+..|+++++..|. .++..+|.++.
T Consensus 175 ~~~~-------------------------~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 175 GAGG-------------------------AGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp ------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred Hhhh-------------------------hcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 1000 01123344567666 889999999999999997665 78889999999
Q ss_pred HcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 627 LKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAEL 702 (760)
Q Consensus 627 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l 702 (760)
..|++++|+..++++++..|....++..++ ..|++++|+..++++++++|.++.++..+|.++...|++++|+..|
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999998877766554 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCc-----------HHHH-HHHHHHHHcCCHHHHHHHHHHHHhc
Q 004336 703 SRAIAFKADL-----------HLLH-LRAAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 703 ~kal~~~p~~-----------~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
++++...|++ ...+ ..+.++..+|++++|...++++++.
T Consensus 309 ~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9999999887 5555 4488899999999999999877653
No 16
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=3.7e-24 Score=240.51 Aligned_cols=366 Identities=11% Similarity=0.027 Sum_probs=265.2
Q ss_pred HHHHhhHhhcccCCCChhHHHHHHHHHHHHHh------HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcch-
Q 004336 347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAET------DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMF- 419 (760)
Q Consensus 347 l~~~l~~v~~~~~~~~~~~~~lle~l~~~a~~------~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~- 419 (760)
+|..++.+.. ..+..+.+...+++..+.... ....+..+..+|.+|..+|++++|+.+|++++.+.|.....
T Consensus 53 ~yn~Lg~~~~-~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 53 MCNLLAYLKH-LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 4555555543 334566666666665544321 34457788999999999999999999999999875432211
Q ss_pred -hchHHHHHHHHHHHHHc--cCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHH
Q 004336 420 -EGRVAASQLHMLVREHI--DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL---RLNCPEA 493 (760)
Q Consensus 420 -~~~~~a~~~lg~l~~~~--g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~ 493 (760)
.....++..+|..+... +++++|+.++ ++++..+|+++.++..+|.++. ..++.++
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~------------------~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCF------------------EKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHhcCchHHHH
Confidence 01135677777666554 5799999999 9999999999999999998755 4577789
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhH
Q 004336 494 AMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSL 568 (760)
Q Consensus 494 Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~ 568 (760)
|++.|+++++++|+++.++..+|..+.. .|++++|+..+++++..+|+. .++..+|.++... +.
T Consensus 194 al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~-----------~~ 262 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK-----------DE 262 (472)
T ss_dssp THHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-----------TC
T ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc-----------Cc
Confidence 9999999999999999999888877655 467889999999999999999 9999999999998 88
Q ss_pred HHHHHhhhHhhccH----HHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhhcch--HHHHHHHH
Q 004336 569 LEDALKCPSDRLRK----GQALNNLGSVYVDC-------------------GQLDLAADCYSNALKIRHT--RAHQGLAR 623 (760)
Q Consensus 569 leeAl~~~~~~l~~----~~a~~~Lg~~y~~~-------------------g~~~eA~~~~~~Al~~~~~--~a~~~La~ 623 (760)
+++|+..+.+++.. +.++.++|.+|... +.+++|+..|+++++.+|. .++..+|.
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~ 342 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHH
Confidence 99999998888443 78888899887643 3467899999999988777 78899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhccCcHHH---HHHH-----HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004336 624 VHFLKNNKTTAYEEMTKLIKKARNNASA---YEKR-----SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~~al~~~~~~~~~---~~~~-----~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~ 695 (760)
++...|++++|+..|+++++..++.... +... ...+++++|+..|+++++++|+...... ..
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~ 412 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MK 412 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HH
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HH
Confidence 9999999999999999999988754332 2211 2347899999999999999998765332 23
Q ss_pred HHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004336 696 NEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
..+...+++++..+|+++..+ ..|.+|...|++++|+++|++||+++|.+|.+....
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 456677889999999988666 558899999999999999999999999998776543
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=1.3e-24 Score=235.89 Aligned_cols=261 Identities=13% Similarity=0.027 Sum_probs=178.0
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++ +
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~------------------~ 123 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDA------EAWQFLGITQAENENEQAAIVAL------------------Q 123 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------H
Confidence 44445555555577777777777777777664 66666777777777777777666 6
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH----------HHHHHHCCCHHHHHHHHHHH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE----------GWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~L----------g~i~~~~g~~eeAl~~~~~a 535 (760)
+++..+|+++.+++.+|.+|...|++++|+..|+++++..|++...+..+ |.++...|++++|+..|+++
T Consensus 124 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 203 (365)
T 4eqf_A 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66666777777777777777777777777777777776666655444433 66666677777777777777
Q ss_pred HhhcCC--hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 536 IQMKRS--FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 536 l~l~p~--~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
++.+|+ + +.++..+|.+|...|++++|+.+|+++++..
T Consensus 204 l~~~p~~~~----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 204 AHQNGDMID----------------------------------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp HHHSCSSCC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhCcCccC----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 766666 4 4566667777777777777777777777655
Q ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 614 HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 614 ~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
|. .++..+|.++...|++ ++|+..|+++++++|+++.++..+|.++..
T Consensus 244 p~~~~~~~~l~~~~~~~g~~------------------------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 244 PEDYSLWNRLGATLANGDRS------------------------------EEAVEAYTRALEIQPGFIRSRYNLGISCIN 293 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCH------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCH------------------------------HHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 54 6666777777766666 555555556666677778888899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCc------------HHHH-HHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 692 SHKENEAIAELSRAIAFKADL------------HLLH-LRAAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 692 ~g~~~eAi~~l~kal~~~p~~------------~~~~-l~a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
.|++++|+..|++++...|+. ..++ ..+.++..+|+.+.|....++.+.
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 999999999999999988773 2233 447778888999988887776443
No 18
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.93 E-value=3.7e-26 Score=236.97 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=126.5
Q ss_pred CCCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCC--CCccceeEecCCCCCHHHHHHHHhccccCccCCCChh
Q 004336 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN 253 (760)
Q Consensus 176 ~~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~--e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~ 253 (760)
-.++.+|||+|+|||++|+|||.|||++|+||++||++++. |+...+|+|+ |+++++|+.+++|+|||++. ++.+
T Consensus 26 ~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~--~v~~~~f~~ll~~~Yt~~~~-i~~~ 102 (256)
T 3hve_A 26 REESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNED 102 (256)
T ss_dssp CC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECS--SCCHHHHHHHHHHHHHSCCC-CC-C
T ss_pred HhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeC--CCCHHHHHHHHhhccCCCCc-ccHh
Confidence 35788999999999999999999999999999999999998 7788899998 89999999999999999997 9999
Q ss_pred hHHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchh
Q 004336 254 LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVV 325 (760)
Q Consensus 254 ~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~ 325 (760)
||++++.+|++|+++.|++.|+.||...+ +++||++++.+|..+++..|...|.+++.++|......+++.
T Consensus 103 ~v~~ll~~A~~l~i~~l~~~c~~~L~~~l-~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~ 173 (256)
T 3hve_A 103 TIQDVVQAADLLLLTDLKTLCCEFLEGCI-AAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFL 173 (256)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHTC-CSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHhhC-CHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchh
Confidence 99999999999999999999999999998 789999999999999999999999999999998766655554
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=2.5e-24 Score=228.25 Aligned_cols=266 Identities=15% Similarity=0.035 Sum_probs=211.2
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++ .
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~------------------~ 79 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPERE------EAWRSLGLTQAENEKDGLAIIAL------------------N 79 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------H
Confidence 45556666666688888888888888888874 77888888888888888888888 8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH--------------HH-HHHHCCCHHHHHH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE--------------GW-ILYDTSHCEEGLR 530 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~L--------------g~-i~~~~g~~eeAl~ 530 (760)
+++..+|.+..+++.+|.++...|++++|+..++++++..|.+...+..+ |. ++...|++++|+.
T Consensus 80 ~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 80 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHH
T ss_pred HHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 88888888888888888888888888888888888888888877766666 55 5777788888888
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 531 KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 531 ~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
.++++++..|++ ..++..+|.++...|++++|+..|++++
T Consensus 160 ~~~~~~~~~~~~----------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 199 (327)
T 3cv0_A 160 LLHAALEMNPND----------------------------------------AQLHASLGVLYNLSNNYDSAAANLRRAV 199 (327)
T ss_dssp HHHHHHHHSTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCC----------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888888887777 6778888888888888888888888888
Q ss_pred hhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 004336 611 KIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAV 688 (760)
Q Consensus 611 ~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~ 688 (760)
+..|. .++..+|.++...|++++|+..++ ++++.+|.+..++..+|.+
T Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~------------------------------~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 200 ELRPDDAQLWNKLGATLANGNRPQEALDAYN------------------------------RALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH------------------------------HHHHHCTTCHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH------------------------------HHHHcCCCCHHHHHHHHHH
Confidence 87665 778888888888888755555555 4555566677788888999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC------------cHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004336 689 LMDSHKENEAIAELSRAIAFKAD------------LHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPND 745 (760)
Q Consensus 689 ~~~~g~~~eAi~~l~kal~~~p~------------~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~ 745 (760)
+...|++++|+..+++++...|+ ....+ ..+.++..+|++++|...++++++..|++
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999998 56555 44888899999999999999888765543
No 20
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=218.13 Aligned_cols=141 Identities=22% Similarity=0.312 Sum_probs=130.8
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|+|++|+|||.||+++|+||++||+++|.|+...+|.|+ ++++++|+.+++|+|||++. ++.+++.
T Consensus 30 ~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~~l~~~Yt~~~~-~~~~~~~ 106 (172)
T 3htm_A 30 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKMAD 106 (172)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEEC--SSCHHHHHHHHHHHHHSCCT-TGGGTHH
T ss_pred hCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEec--CCCHHHHHHHHHHHhCCCCC-CcHHHHH
Confidence 36678999999999999999999999999999999999999999999998 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCc
Q 004336 257 EILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND 321 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~ 321 (760)
+|+.+|++|+++.|++.|+.||...+ +..|++.++.+|..++.+.|...|.+++.+++...+..
T Consensus 107 ~ll~~A~~~~~~~l~~~c~~~l~~~l-~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s 170 (172)
T 3htm_A 107 DLLAAADKYALERLKVMCEDALCSNL-SVENAAEILILADLHSADQLKTQAVDFINYHATDVLET 170 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999988 78999999999999999999999999999999876543
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=3.4e-23 Score=219.85 Aligned_cols=273 Identities=12% Similarity=0.013 Sum_probs=233.2
Q ss_pred CCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc-C
Q 004336 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID-N 438 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g-~ 438 (760)
+..+.+...+++..... +.....+..++.++...|++++|+..+++++..+|+++ .++..+|.++...| +
T Consensus 36 g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKD---PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP------VSWFAVGCYYLMVGHK 106 (330)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST------HHHHHHHHHHHHSCSC
T ss_pred CCHHHHHHHHHHHHHcC---CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHHhhhh
Confidence 34455566666655442 22344556667777888899999999999999999996 89999999999999 9
Q ss_pred HHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004336 439 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 518 (760)
Q Consensus 439 ~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i 518 (760)
+++|+.++ ++++..+|.++.+++.+|.++...|++++|+..|+++++..|++..++..+|.+
T Consensus 107 ~~~A~~~~------------------~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 107 NEHARRYL------------------SKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHH------------------HHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHH------------------HHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCC
Q 004336 519 LYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ 598 (760)
Q Consensus 519 ~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~ 598 (760)
+...|++++|+..++++++..|++ ..++..+|.++...|+
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~----------------------------------------~~~~~~l~~~~~~~~~ 208 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPED----------------------------------------PFVMHEVGVVAFQNGE 208 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTC----------------------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCC----------------------------------------hHHHHHHHHHHHHccc
Confidence 999999999999999999999998 7889999999999999
Q ss_pred HHHHHHHHHHHHhhc---------ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHH
Q 004336 599 LDLAADCYSNALKIR---------HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRAD 667 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~---------~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~ 667 (760)
+++|+..|+++++.. +. .++..+|.++...|++++|+..+++
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------- 261 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ--------------------------- 261 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH---------------------------
Confidence 999999999999853 22 7999999999999998666655554
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHH-HHcCCHH
Q 004336 668 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFH-EHTGDVL 729 (760)
Q Consensus 668 l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~-~~~g~~~ 729 (760)
+++.+|+++.++..+|.++...|++++|+..++++++..|++...+.. +.++ ...|+.+
T Consensus 262 ---a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 262 ---ALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp ---HHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred ---HHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 455556777888888999999999999999999999999998876633 5555 4556543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=9.2e-24 Score=228.61 Aligned_cols=260 Identities=14% Similarity=0.061 Sum_probs=218.3
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..++.+|..++..|++++|+..|+++++.+|++. .++..+|.++...|++++|+.++
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~----------------- 121 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM------EAWQYLGTTQAENEQELLAISAL----------------- 121 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH------HHHHHHHHHHHHTTCHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCcCHHHHHHHH-----------------
Confidence 4456778888888899999999999999999995 89999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH----------------HHHHHHHHCCCHHH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV----------------YEGWILYDTSHCEE 527 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~----------------~Lg~i~~~~g~~ee 527 (760)
.+++..+|+++.+++.+|.++...|++++|+..|++++...|.+...+. .+|.++ ..|++++
T Consensus 122 -~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 199 (368)
T 1fch_A 122 -RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLE 199 (368)
T ss_dssp -HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHH
T ss_pred -HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHH
Confidence 9999999999999999999999999999999999999999998877664 467666 9999999
Q ss_pred HHHHHHHHHhhcCC--hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004336 528 GLRKAEESIQMKRS--FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADC 605 (760)
Q Consensus 528 Al~~~~~al~l~p~--~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~ 605 (760)
|+..|+++++.+|+ . ..++..+|.++...|++++|+..
T Consensus 200 A~~~~~~a~~~~p~~~~----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 200 VKELFLAAVRLDPTSID----------------------------------------PDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp HHHHHHHHHHHSTTSCC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcCccc----------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998 5 56667777777777777777777
Q ss_pred HHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCC-
Q 004336 606 YSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLR- 678 (760)
Q Consensus 606 ~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~- 678 (760)
|+++++..|. .++..+|.++...|++++|+..++++++..|....++..++ ..|++++|+..+++++.++|++
T Consensus 240 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 240 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 7777776554 66777777777777777777777777777776655554443 3477777777777777777766
Q ss_pred ----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 679 ----------VYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 679 ----------~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
..+|..+|.++...|++++|...++++++.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 889999999999999999999998877754
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=3.2e-24 Score=235.23 Aligned_cols=256 Identities=14% Similarity=0.023 Sum_probs=225.7
Q ss_pred HHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 004336 409 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 488 (760)
Q Consensus 409 aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~ 488 (760)
++.++|++. .++..+|.++...|++++|+..+ .+++..+|++..+|+.+|.++..+
T Consensus 89 ai~~~p~~~------~a~~~lg~~~~~~g~~~~Al~~~------------------~~al~l~P~~~~a~~~~g~~l~~~ 144 (382)
T 2h6f_A 89 QIIYSDKFR------DVYDYFRAVLQRDERSERAFKLT------------------RDAIELNAANYTVWHFRRVLLKSL 144 (382)
T ss_dssp EECCCHHHH------HHHHHHHHHHHHTCCCHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hhhCChhhH------HHHHHHHHHHHHCCChHHHHHHH------------------HHHHHhCccCHHHHHHHHHHHHHc
Confidence 455666664 88999999999999999999999 999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhh
Q 004336 489 NC-PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS 567 (760)
Q Consensus 489 g~-~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~ 567 (760)
|+ +++|+..|++++.++|++..+|+++|.++..+|++++|+..|+++++++|++
T Consensus 145 g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------------------------- 199 (382)
T 2h6f_A 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------------------------- 199 (382)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------------------------
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------------------------
Confidence 97 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 004336 568 LLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL-KNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 568 ~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~-~g~~~~A~~~l~~al~~ 644 (760)
..+|+++|.++...|++++|+.+|+++++++|. .+|+++|.++.. .|..++|+
T Consensus 200 ---------------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~--------- 255 (382)
T 2h6f_A 200 ---------------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV--------- 255 (382)
T ss_dssp ---------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH---------
T ss_pred ---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH---------
Confidence 889999999999999999999999999998877 899999999999 55445554
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcHHHH-HHHHH
Q 004336 645 ARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSH--KENEAIAELSRAIAFKADLHLLH-LRAAF 721 (760)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g--~~~eAi~~l~kal~~~p~~~~~~-l~a~~ 721 (760)
.+.++..+++++.++|++..+|+++|.++...| ++++|++.+.++ ...|++..++ ..+.+
T Consensus 256 ----------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 256 ----------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp ----------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence 134567788888999999999999999999988 689999999888 8888888666 44778
Q ss_pred HHHcC--------C-HHHHHHHHHHH-HhcCCCcHHHHHHHHH
Q 004336 722 HEHTG--------D-VLGALRDCRAA-LSVDPNDQEMLELHSR 754 (760)
Q Consensus 722 ~~~~g--------~-~~~A~~~~~~a-L~l~P~~~~~l~~~~r 754 (760)
+..+| + +++|++.|+++ ++++|.....+..+.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 87764 2 58999999999 9999999887765544
No 24
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.92 E-value=1.3e-25 Score=235.94 Aligned_cols=148 Identities=20% Similarity=0.339 Sum_probs=129.4
Q ss_pred CCccceeEEEEec---CeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCC----CCCHHHHHHHHhccccCccCC
Q 004336 177 GDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSEN----NISPSGLRIISDFSVTGSLNG 249 (760)
Q Consensus 177 ~~~~~~dv~~~~~---~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~----~i~~~~~~~~~~~~yt~~~~~ 249 (760)
.++.+|||+|+|| |++|+|||.|||++|+||++||+++|+|+.+.+|+|++. +|++.+|+.+++|+|||++.
T Consensus 28 ~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~- 106 (279)
T 3i3n_A 28 RQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIR- 106 (279)
T ss_dssp HHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEE-
T ss_pred hcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcc-
Confidence 3677999999998 999999999999999999999999999999999999621 79999999999999999997
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhh
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVE 326 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~ 326 (760)
++.+||.+|+.+|++|+++.|++.|+.||...+ +.+||++++.+|..+++..|...|.+++.++|......+++..
T Consensus 107 i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l-~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~ 182 (279)
T 3i3n_A 107 VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKL-HLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYT 182 (279)
T ss_dssp EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGG
T ss_pred cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcC-CcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhc
Confidence 999999999999999999999999999999998 7899999999999999999999999999999988776666654
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=2.5e-23 Score=228.20 Aligned_cols=242 Identities=10% Similarity=0.049 Sum_probs=217.6
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC-HHHHHHHHhhhccccccCCc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~-~~~A~~~l~l~~~~~~~~d~ 458 (760)
...+.++..+|.++...|++++|+..|++++.++|++. .+++.+|.++...|+ +++|+.++
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~------~a~~~~g~~l~~~g~d~~eAl~~~------------ 155 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY------TVWHFRRVLLKSLQKDLHEEMNYI------------ 155 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCCHHHHHHHH------------
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH------HHHHHHHHHHHHcccCHHHHHHHH------------
Confidence 45677788899999999999999999999999999995 999999999999997 99999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
++++..+|++..+|+++|.++..+|++++|+..|+++++++|++..+|+++|.++...|++++|+..|++++++
T Consensus 156 ------~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 156 ------TAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ------HHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhh
Q 004336 539 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD-CGQLDLA-----ADCYSNALKI 612 (760)
Q Consensus 539 ~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~-~g~~~eA-----~~~~~~Al~~ 612 (760)
+|++ ..+|+++|.++.. .|.+++| +.+|++++++
T Consensus 230 ~P~~----------------------------------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 230 DVRN----------------------------------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp CTTC----------------------------------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred CCCC----------------------------------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 9999 7888888888888 5554777 5999999998
Q ss_pred cch--HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 004336 613 RHT--RAHQGLARVHFLKN--NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAV 688 (760)
Q Consensus 613 ~~~--~a~~~La~~~~~~g--~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~ 688 (760)
+|. .+|++++.++...| ++ ++|+..+.++ +.+|++..++..+|.+
T Consensus 270 ~P~~~~a~~~l~~ll~~~g~~~~------------------------------~~a~~~~~~~-~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 270 VPHNESAWNYLKGILQDRGLSKY------------------------------PNLLNQLLDL-QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp STTCHHHHHHHHHHHTTTCGGGC------------------------------HHHHHHHHHH-TTTCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCccch------------------------------HHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence 877 89999999998877 34 3444455555 6788888889999999
Q ss_pred HHHcC---------CHHHHHHHHHHH-HHcCCCcHHHH
Q 004336 689 LMDSH---------KENEAIAELSRA-IAFKADLHLLH 716 (760)
Q Consensus 689 ~~~~g---------~~~eAi~~l~ka-l~~~p~~~~~~ 716 (760)
|.++| .+++|++.|+++ ++.+|....+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 99874 258999999999 99999988777
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=3.6e-21 Score=218.43 Aligned_cols=347 Identities=12% Similarity=-0.034 Sum_probs=286.0
Q ss_pred ChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHh----cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHH--
Q 004336 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLL----RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH-- 435 (760)
Q Consensus 362 ~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~----~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~-- 435 (760)
.+.+...+++..+. ..+.+++.+|.+|.. .+++++|+.+|+++... +++ .+++.+|.++..
T Consensus 59 ~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~------~a~~~Lg~~y~~g~ 125 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP------QAQQNLGVMYHEGN 125 (490)
T ss_dssp HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH------HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH------HHHHHHHHHHHcCC
Confidence 34444444443322 356789999999999 99999999999999875 453 889999999998
Q ss_pred --ccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcH
Q 004336 436 --IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDH 509 (760)
Q Consensus 436 --~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~Ai~~l~kal~~~p~~~ 509 (760)
.+++++|+.++ +++... +++.+++.+|.+|.. .+++++|+.+|+++++. .++
T Consensus 126 g~~~~~~~A~~~~------------------~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~ 183 (490)
T 2xm6_A 126 GVKVDKAESVKWF------------------RLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNV 183 (490)
T ss_dssp SSCCCHHHHHHHH------------------HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCCCHHHHHHHH------------------HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 89999999999 787664 689999999999998 89999999999999986 579
Q ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--H
Q 004336 510 ERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--G 583 (760)
Q Consensus 510 ~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--~ 583 (760)
.+++.+|.+|.. .+++++|+.+|+++.+.. +..+++.+|.++..... ..+.+++|+..+.++... .
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~g-------~~~~~~~A~~~~~~a~~~~~~ 255 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-DELGQLHLADMYYFGIG-------VTQDYTQSRVLFSQSAEQGNS 255 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSS-------SCCCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCC-------CCCCHHHHHHHHHHHHHCCCH
Confidence 999999999999 999999999999998753 22889999999886211 126788888888887444 8
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhccCcHHHHHH
Q 004336 584 QALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAHQGLARVHFLK-----NNKTTAYEEMTKLIKKARNNASAYEK 654 (760)
Q Consensus 584 ~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~-----g~~~~A~~~l~~al~~~~~~~~~~~~ 654 (760)
.+++.+|.+|.. .+++++|+.+|+++.+.++..+++.+|.+|... +++++|+.+|+++++..+..+.....
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 335 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLG 335 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 899999999999 999999999999999998889999999999998 99999999999999886533222111
Q ss_pred HH--hcC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHH
Q 004336 655 RS--EYC---DRELTRADLEMVTQLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAIAFKADLHLLH-LRAAFHEH 724 (760)
Q Consensus 655 ~~--~~~---~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~----~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~ 724 (760)
.. ..| +.++|+..|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+.. ++..+ ..+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Confidence 11 113 789999999999987 678999999999999 899999999999999864 44444 44777777
Q ss_pred ----cCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHh
Q 004336 725 ----TGDVLGALRDCRAALSVDPN---DQEMLELHSRV 755 (760)
Q Consensus 725 ----~g~~~~A~~~~~~aL~l~P~---~~~~l~~~~r~ 755 (760)
.+++++|..+|+++++.+|+ ++.+...+.++
T Consensus 412 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 412 GLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 79999999999999999955 77666555443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=2.4e-23 Score=225.88 Aligned_cols=262 Identities=14% Similarity=0.096 Sum_probs=211.1
Q ss_pred HHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHH
Q 004336 403 EHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 482 (760)
Q Consensus 403 ~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la 482 (760)
...+..++...|+++.. ....++.+|..+...|++++|+.++ ++++..+|+++.+++.+|
T Consensus 47 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~lg 106 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFK--DWPGAFEEGLKRLKEGDLPVTILFM------------------EAAILQDPGDAEAWQFLG 106 (365)
T ss_dssp ------CCCCCSSCTTT--TCTTHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHhhhcccCCccc--chhHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCcCCHHHHHHHH
Confidence 34555666666665421 1356889999999999999999999 999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCc
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSC 561 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~ 561 (760)
.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++++.|++ ..+..++ ..
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----~~------ 176 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK----GS------ 176 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc----cc------
Confidence 999999999999999999999999999999999999999999999999999999998877 2222221 00
Q ss_pred chhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHHHH
Q 004336 562 SSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 562 ~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~~~ 637 (760)
...+..+|.++...|++++|+.+|+++++..|. .++..+|.++...|++++|+..
T Consensus 177 ---------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 235 (365)
T 4eqf_A 177 ---------------------PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235 (365)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------------------hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455677899999999999999999999997654 7899999999999988666655
Q ss_pred HHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 004336 638 MTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL 717 (760)
Q Consensus 638 l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l 717 (760)
+++ +++.+|+++.++..+|.++...|++++|+..|++++...|++...+.
T Consensus 236 ~~~------------------------------al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 285 (365)
T 4eqf_A 236 FNA------------------------------ALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY 285 (365)
T ss_dssp HHH------------------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHH------------------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 554 45556677788888999999999999999999999999999987774
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004336 718 -RAAFHEHTGDVLGALRDCRAALSVDPND 745 (760)
Q Consensus 718 -~a~~~~~~g~~~~A~~~~~~aL~l~P~~ 745 (760)
.+.++...|++++|+..|+++++++|++
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4899999999999999999999999884
No 28
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.90 E-value=2.7e-24 Score=192.37 Aligned_cols=102 Identities=20% Similarity=0.392 Sum_probs=91.6
Q ss_pred CCccceeEEEEecC----eEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCCh
Q 004336 177 GDQVLRNVVFRIHE----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (760)
Q Consensus 177 ~~~~~~dv~~~~~~----~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~ 252 (760)
+++.+|||+|.|+| ++|+|||.|||++|+||++||+++|.|+. .+|.|+ ++++++|+.+++|+|||++. ++.
T Consensus 4 ~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~--~~~~~~f~~~l~~iYt~~~~-~~~ 79 (109)
T 2vkp_A 4 NNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIP--DVEPAAFLILLKYMYSDEID-LEA 79 (109)
T ss_dssp TCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEET--TSCHHHHHHHHHHHHHCCCC-CCT
T ss_pred cCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeC--CCCHHHHHHHHHHHcCCCcc-CCH
Confidence 46789999999998 89999999999999999999999999999 899997 89999999999999999997 999
Q ss_pred hhHHHHHHHHhhhChHhHHHHHHHHHHhhc
Q 004336 253 NLLLEILIFANKFCCERLKDACDRKLASLV 282 (760)
Q Consensus 253 ~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~ 282 (760)
+||.+|+.+|++|+++.|++.|..||.+.+
T Consensus 80 ~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 80 DTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 999999999999999999999999998753
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=6.5e-22 Score=209.11 Aligned_cols=266 Identities=11% Similarity=0.024 Sum_probs=210.9
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~ 473 (760)
+..|+|.+|+..++++...+|++. .++...++.++...|+++.|+..+ +. .+|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~-----~e~~~~l~r~yi~~g~~~~al~~~------------------~~---~~~~ 63 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERD-----VERDVFLYRAYLAQRKYGVVLDEI------------------KP---SSAP 63 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHH-----HHHHHHHHHHHHHTTCHHHHHHHS------------------CT---TSCH
T ss_pred HHHHHHHHHHHHHHhcccCCchhh-----HHHHHHHHHHHHHCCCHHHHHHHh------------------cc---cCCh
Confidence 444599999999988877777763 467788889999999999988766 22 2455
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
...++..++..+...|++++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~--------- 129 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS--------- 129 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS---------
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC---------
Confidence 6777888888888899999999999998875 588999999999999999999999988887 666
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCH
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNK 631 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~ 631 (760)
..++..+|.+|...|++++|+..|+++++.+|......++..+....
T Consensus 130 -------------------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~-- 176 (291)
T 3mkr_A 130 -------------------------------LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLA-- 176 (291)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred -------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH--
Confidence 67888888999999999999999999988877754444443322210
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 632 TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 632 ~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
...|++++|+..|+++++.+|.++.+++++|.++...|++++|+..|++++..+|+
T Consensus 177 ------------------------~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 177 ------------------------AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp ------------------------HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ------------------------hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 01134566667777777778888888888999999999999999999999999999
Q ss_pred cHHHHHH-HHHHHHcCCHHH-HHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 712 LHLLHLR-AAFHEHTGDVLG-ALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 712 ~~~~~l~-a~~~~~~g~~~~-A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
++..+.. +.++...|+..+ +.++++++++++|+|+.+.++..+-.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~ 279 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKEN 279 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9877744 777888898876 56888999999999999888766543
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=3.7e-20 Score=210.11 Aligned_cols=327 Identities=11% Similarity=-0.028 Sum_probs=276.2
Q ss_pred HHHHHHHHhhhHHHh----cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHH----ccCHHHHHHHHhhhccc
Q 004336 381 QRLLAFHQLGCVRLL----RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRW 452 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~----~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~----~g~~~~A~~~l~l~~~~ 452 (760)
..+.+++.+|..|.. .+++++|+.+|++++.. +++ .+++.+|.++.. .+++++|..++
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~------~a~~~Lg~~y~~g~g~~~~~~~A~~~~------ 102 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYT------PAEYVLGLRYMNGEGVPQDYAQAVIWY------ 102 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH------HHHHHHHHHHHHTSSSCCCHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCH------HHHHHHHHHHHcCCCCCCCHHHHHHHH------
Confidence 356788899999998 89999999999999876 453 899999999999 99999999999
Q ss_pred cccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCC
Q 004336 453 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSH 524 (760)
Q Consensus 453 ~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~ 524 (760)
+++... .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .++
T Consensus 103 ------------~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 103 ------------KKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp ------------HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred ------------HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 888764 588999999999999 89999999999999875 579999999999998 899
Q ss_pred HHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--HHHHHHHHHHHHH----cC
Q 004336 525 CEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--GQALNNLGSVYVD----CG 597 (760)
Q Consensus 525 ~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--~~a~~~Lg~~y~~----~g 597 (760)
+++|+.+|+++++. .+ .+++.+|.++.... ...+..++|++.+.++... ..+++.+|.+|.. .+
T Consensus 167 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~-------g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 167 YVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGL-------GVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS-------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCC-------CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCC
Confidence 99999999999976 34 89999999998721 1117788888888887443 8899999999997 89
Q ss_pred CHHHHHHHHHHHHhhcchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccCcHHHHHHHH----hc-----CCHHHH
Q 004336 598 QLDLAADCYSNALKIRHTRAHQGLARVHFL----KNNKTTAYEEMTKLIKKARNNASAYEKRS----EY-----CDRELT 664 (760)
Q Consensus 598 ~~~eA~~~~~~Al~~~~~~a~~~La~~~~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~-----~~~~~A 664 (760)
++++|+.+|+++++.++..+++.+|.+|.. .+++++|+.+|+++++..... ++..++ .. ++.++|
T Consensus 238 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~--a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSD--GQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHH--HHHHHHHHHHHCBTTBCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999999999999888999999999999 999999999999998765422 222221 22 799999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHH----cCCHHHHHHHHH
Q 004336 665 RADLEMVTQLDPLRVYPYRYRAAVLMDSH---KENEAIAELSRAIAFKADLHLLH-LRAAFHEH----TGDVLGALRDCR 736 (760)
Q Consensus 665 ~~~l~kal~l~p~~~~~~~~La~~~~~~g---~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~----~g~~~~A~~~~~ 736 (760)
+..|+++.+. .++.+++.+|.+|...| ++++|+.+|+++++. +++..+ ..+.+|.. .+++++|+.+|+
T Consensus 316 ~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 316 ISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999999986 46789999999999877 899999999999987 445444 44777877 799999999999
Q ss_pred HHHhcCCCcHHHHHHHHH
Q 004336 737 AALSVDPNDQEMLELHSR 754 (760)
Q Consensus 737 ~aL~l~P~~~~~l~~~~r 754 (760)
++++.. ++.++..+..
T Consensus 392 ~A~~~~--~~~a~~~Lg~ 407 (490)
T 2xm6_A 392 KAAEQG--LSAAQVQLGE 407 (490)
T ss_dssp HHHHTT--CHHHHHHHHH
T ss_pred HHHhCC--CHHHHHHHHH
Confidence 999864 4555544443
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=2.8e-22 Score=207.46 Aligned_cols=244 Identities=13% Similarity=0.122 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 425 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 425 a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
.+...|.++...|++++|+..+ ++++..+|.++.+++.+|.++...|++++|+..++++++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~------------------~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~- 65 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVF------------------NKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS- 65 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHH------------------HHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCHHHHHHHH------------------HHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 4455566666666666666666 666666666666666666666666666666666666665
Q ss_pred CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc
Q 004336 505 AASD----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL 580 (760)
Q Consensus 505 ~p~~----~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l 580 (760)
.|.+ ..++..+|.++...|++++|+..|+++++.+|++
T Consensus 66 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------------------------------------- 107 (272)
T 3u4t_A 66 KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-------------------------------------- 107 (272)
T ss_dssp TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------------------------------
T ss_pred ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc--------------------------------------
Confidence 2222 2335666666666666666666666666666655
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhc
Q 004336 581 RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 658 (760)
Q Consensus 581 ~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~ 658 (760)
..++..+|.+|...|++++|+.+|+++++.+|. .++..+|...+..+
T Consensus 108 --~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~----------------------------- 156 (272)
T 3u4t_A 108 --LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK----------------------------- 156 (272)
T ss_dssp --THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-----------------------------
T ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-----------------------------
Confidence 455556666666666666666666666655443 55555553333333
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC---CCcH-----HHH-HHHHHHHHcC
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK---ENEAIAELSRAIAFK---ADLH-----LLH-LRAAFHEHTG 726 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~---~~eAi~~l~kal~~~---p~~~-----~~~-l~a~~~~~~g 726 (760)
++++|+..++++++.+|++..++..+|.++...|+ +++|+..|+++++.. |+.. ..+ ..+.++...|
T Consensus 157 -~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 -EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp -CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 44666667777777778888888899999999998 999999999999876 5421 222 4488899999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 727 DVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 727 ~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
++++|+..|+++++++|+++.+.+.+.++..
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 9999999999999999999999988777654
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=6.5e-22 Score=204.67 Aligned_cols=246 Identities=12% Similarity=0.086 Sum_probs=212.6
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..++..|..++..|++++|+..|+++++.+|++. .++..+|.++...|++++|+.++
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~----------------- 60 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP------YIYNRRAVCYYELAKYDLAQKDI----------------- 60 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS------TTHHHHHHHHHHTTCHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhhHHHHHHHH-----------------
Confidence 3466778888888899999999999999999996 78999999999999999999999
Q ss_pred HHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 464 IYQMLESDAPK----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 464 ~~~al~~~p~~----~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.+++. .|.+ +.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+
T Consensus 61 -~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 61 -ETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp -HHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred -HHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 88888 3333 45699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HH
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA 617 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a 617 (760)
|.+ ..++.++|......+++++|+..|+++++..|. .+
T Consensus 139 ~~~----------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 178 (272)
T 3u4t_A 139 TTD----------------------------------------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178 (272)
T ss_dssp CCC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred CCc----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 998 778888894444556999999999999998777 88
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 004336 618 HQGLARVHFLKNN---KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK 694 (760)
Q Consensus 618 ~~~La~~~~~~g~---~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~ 694 (760)
+..+|.++...|+ +++|+..++++++.....+.... +....++..+|.++...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 179 YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK----------------------DELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH----------------------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch----------------------HHHHHHHHHHHHHHHHcCC
Confidence 9999999999999 88899998888877531110000 0012567889999999999
Q ss_pred HHHHHHHHHHHHHcCCCcHHHH
Q 004336 695 ENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 695 ~~eAi~~l~kal~~~p~~~~~~ 716 (760)
+++|+..|+++++.+|+++.++
T Consensus 237 ~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 237 KVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhcCccHHHHH
Confidence 9999999999999999998776
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=2e-22 Score=203.23 Aligned_cols=196 Identities=17% Similarity=0.082 Sum_probs=173.0
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+.+++.+|.+++..|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~--------------- 62 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP------EALYWLARTQLKLGLVNPALENG--------------- 62 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH------HHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH---------------
Confidence 345678889999999999999999999999999996 99999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRL-----------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 530 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~ 530 (760)
++++..+|+++.+++.+|.++... |++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus 63 ---~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 63 ---KTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp ---HHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 531 KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 531 ~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
.|+++++++ ++ +.++.++|.+|...|++++|+..|++++
T Consensus 140 ~~~~al~~~-~~----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 140 SLKQALALE-DT----------------------------------------PEIRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHHHHHHC-CC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhcc-cc----------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998 77 7889999999999999999999999999
Q ss_pred hhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 611 KIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLI 642 (760)
Q Consensus 611 ~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al 642 (760)
+.+|. .++.++|.++...|++++|+..++++-
T Consensus 179 ~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 179 EQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHSTTCHHHHHHHHHHHTC---------------
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 98776 899999999999999999999988653
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=4.1e-22 Score=200.97 Aligned_cols=194 Identities=12% Similarity=0.055 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.++..+|.++...|++++|+..+ ++++..+|+++.+++.+|.++...|++++|+..|+++++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 67 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLF------------------ERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888888888888888888888 888888888888888888888888888888888888888
Q ss_pred hCCCcHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHH
Q 004336 504 HAASDHERLVYEGWILYDT-----------SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDA 572 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~-----------g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeA 572 (760)
++|+++.++..+|.++... |++++|+..|+++++++|++
T Consensus 68 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------------------------------ 117 (217)
T 2pl2_A 68 RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY------------------------------ 117 (217)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC------------------------------
T ss_pred hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc------------------------------
Confidence 8888888888888888888 88888888888888888888
Q ss_pred HhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHH
Q 004336 573 LKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 650 (760)
Q Consensus 573 l~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~ 650 (760)
..++.++|.++...|++++|+..|+++++++ . .++.++|.++...|++++|+..|+
T Consensus 118 ----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~----------- 175 (217)
T 2pl2_A 118 ----------APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA----------- 175 (217)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH-----------
T ss_pred ----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH-----------
Confidence 7788888888888888888888888888876 4 788888888888888755544444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 651 AYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706 (760)
Q Consensus 651 ~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal 706 (760)
++++.+|+++.++..+|.++...|++++|+..++++.
T Consensus 176 -------------------~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 176 -------------------KALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -------------------HHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred -------------------HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 4455566677777777888888888888888887764
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.9e-21 Score=198.67 Aligned_cols=226 Identities=15% Similarity=0.080 Sum_probs=171.7
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+..+..+|..++..|++++|+..|++++..+ ++. .++..+|.++...|++++|+.++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~------~~~~~~~~~~~~~~~~~~A~~~~-------------- 61 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI------TYLNNRAAAEYEKGEYETAISTL-------------- 61 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT------HHHHHHHHHHHHTTCHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH------HHHHHHHHHHHHcccHHHHHHHH--------------
Confidence 467888999999999999999999999999999 664 89999999999999999999999
Q ss_pred HHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 004336 461 LSVIYQMLESDAPK-------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 461 l~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
.+++..+|.+ +.+++.+|.++...|++++|+..|++++...|. +.++...|++++|+..++
T Consensus 62 ----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 62 ----NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAE 129 (258)
T ss_dssp ----HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHH
Confidence 8888888766 688888999999999999999999999888876 456667777888888888
Q ss_pred HHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 534 ESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 534 ~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
+++..+|.. ..++..+|.++...|++++|+..|+++++..
T Consensus 130 ~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 130 AEAYVNPEK----------------------------------------AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp HHHHCCHHH----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCcch----------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888777666 6677777888888888888888777777655
Q ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 614 HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 614 ~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
|. .++..+|.++...|++++|+..+++ +++.+|+++.++..+|.++..
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------------------------------al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADCNK------------------------------AIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH------------------------------HHHHCTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHH------------------------------HHHhCHHHHHHHHHHHHHHHH
Confidence 44 5566666666666655444333333 333344444555555666666
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 004336 692 SHKENEAIAELSRAIAFK 709 (760)
Q Consensus 692 ~g~~~eAi~~l~kal~~~ 709 (760)
.|++++|+..++++++..
T Consensus 220 ~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 220 VKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhC
Confidence 666666666666666555
No 36
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.89 E-value=1.5e-24 Score=204.63 Aligned_cols=124 Identities=23% Similarity=0.331 Sum_probs=94.9
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.+||++|+|||.||+++|+||++||+++|.|+...+|.|+ ++++++|+.+++|+|||++. ++.+++.
T Consensus 21 ~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Y~~~~~-~~~~~~~ 97 (145)
T 4eoz_A 21 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKMAD 97 (145)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEEC--SSCHHHHHHHHHHHHHSCCT-TGGGTHH
T ss_pred hCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEec--CCCHHHHHHHHHhhccCccC-CcHHHHH
Confidence 35678999999999999999999999999999999999999999999998 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHH
Q 004336 257 EILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLA 304 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~ 304 (760)
+|+.+|++|+++.|++.|+.||...+ +.+||+.++.+|..+++..|.
T Consensus 98 ~ll~~A~~~~~~~l~~~c~~~l~~~l-~~~n~~~~l~~A~~~~~~~Lk 144 (145)
T 4eoz_A 98 DLLAAADKYALERLKVMCEDALCSNL-SVENAAEILILADLHSADQLK 144 (145)
T ss_dssp HHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCHHHhc
Confidence 99999999999999999999999998 789999999999999987663
No 37
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.89 E-value=7.8e-24 Score=192.84 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=91.0
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||+++|.|+...+|+|+ ++++++|+.+++|+|||++. ++.+|+.
T Consensus 21 ~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~ll~~~Yt~~~~-~~~~~~~ 97 (120)
T 2if5_A 21 TQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEID--FVSAEALTALMDFAYTATLT-VSTANVG 97 (120)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECC--SSCHHHHHHHHHHHHHSCCC-CCGGGHH
T ss_pred hcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHHHH
Confidence 36779999999999999999999999999999999999999999999997 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHH
Q 004336 257 EILIFANKFCCERLKDACDRKL 278 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l 278 (760)
+|+.+|++|+++.|++.|++||
T Consensus 98 ~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 98 DILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHh
Confidence 9999999999999999999997
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.4e-21 Score=196.75 Aligned_cols=237 Identities=13% Similarity=0.040 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
..++..+|.++...|++++|+.++ .+++..+ .++.+++.+|.++...|++++|+..+++++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~------------------~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 65 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHY------------------NKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV 65 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHH------------------HHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 356666777777777777777777 6666666 666777777777777777777777777777
Q ss_pred HhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhh
Q 004336 503 QHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC 575 (760)
Q Consensus 503 ~~~p~~-------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~ 575 (760)
+..|++ ..++..+|.++...|++++|+..|++++.+.|..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------------- 112 (258)
T 3uq3_A 66 EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------------------------------- 112 (258)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH---------------------------------
T ss_pred HhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh---------------------------------
Confidence 666654 5666777777777777777777777776665543
Q ss_pred hHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHH
Q 004336 576 PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE 653 (760)
Q Consensus 576 ~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~ 653 (760)
.++...|++++|+..+++++..+|. .++..+|.++...|+++
T Consensus 113 ---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 156 (258)
T 3uq3_A 113 ---------------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP--------------------- 156 (258)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH---------------------
T ss_pred ---------------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH---------------------
Confidence 1233445566777777777665554 56666777777766664
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH-HHHHHHHcCCHHHHH
Q 004336 654 KRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGAL 732 (760)
Q Consensus 654 ~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l-~a~~~~~~g~~~~A~ 732 (760)
+|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|++...+. .+.++...|++++|+
T Consensus 157 ---------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 157 ---------NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp ---------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4555555556666777788899999999999999999999999999999987774 499999999999999
Q ss_pred HHHHHHHhcC------CCcHHHHHHHHHhh
Q 004336 733 RDCRAALSVD------PNDQEMLELHSRVY 756 (760)
Q Consensus 733 ~~~~~aL~l~------P~~~~~l~~~~r~~ 756 (760)
..|+++++++ |++.++...+.++.
T Consensus 228 ~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 228 ETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 9999999999 99999998888764
No 39
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.89 E-value=1.9e-23 Score=223.16 Aligned_cols=140 Identities=22% Similarity=0.314 Sum_probs=125.6
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|+|++|+|||.|||++|+||++||.++|.|+...+|+|+ ++++++++.+++|+|||++. ++.++++
T Consensus 170 ~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~~L~~iYt~~~~-~~~~~~~ 246 (312)
T 3hqi_A 170 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKMAD 246 (312)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEEC--SSCHHHHHHHHHHHHHSCCT-THHHHHH
T ss_pred hCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEec--CCCHHHHHHHHHhhcCCCCC-ChHHHHH
Confidence 46778999999999999999999999999999999999999999999997 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccC
Q 004336 257 EILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN 320 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~ 320 (760)
+||.+|++|+++.|+..|+.||...+ +..++..++.+|..+++..|...|++++..++...+.
T Consensus 247 ~ll~~A~~~~~~~l~~~c~~~l~~~~-~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~ 309 (312)
T 3hqi_A 247 DLLAAADKYALERLKVMCEDALCSNL-SVENAAEILILADLHSADQLKTQAVDFINYHATDVLE 309 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988 6899999999999999999999999999998877654
No 40
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.89 E-value=3.1e-21 Score=212.41 Aligned_cols=290 Identities=16% Similarity=0.084 Sum_probs=233.4
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+..++.+|..++..|++++|+..|++++...|+++. ....++..+|.++...|++++|+.++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~------------- 109 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR--TLSAIYSQLGNAYFYLGDYNKAMQYH------------- 109 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--HHHHHHHHHHHHHHHHTCHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh--HHHHHHHHHHHHHHHCCCHHHHHHHH-------------
Confidence 456677788899999999999999999999999999752 12257889999999999999999999
Q ss_pred cHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCC---
Q 004336 460 SLSVIYQMLES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH------AASDHERLVYEGWILYDTSH--- 524 (760)
Q Consensus 460 sl~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~------~p~~~~a~~~Lg~i~~~~g~--- 524 (760)
++++.. .|....+++.+|.+|...|++++|+..|+++++. .|....++..+|.++...|+
T Consensus 110 -----~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 110 -----KHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccc
Confidence 777766 5777889999999999999999999999999988 55667789999999999999
Q ss_pred --------------HHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHH
Q 004336 525 --------------CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 590 (760)
Q Consensus 525 --------------~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg 590 (760)
+++|+..+++++++.+.. + .......++.++|
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------------------~----------~~~~~~~~~~~la 230 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDL------------------------G----------DRGAQGRACGNLG 230 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH------------------------T----------CHHHHHHHHHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHc------------------------C----------CHHHHHHHHHHHH
Confidence 777777777776543221 0 0001157889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHH
Q 004336 591 SVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRE 662 (760)
Q Consensus 591 ~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~ 662 (760)
.+|...|++++|+.+|+++++..+. .++..+|.+|...|++++|+..++++++..+......
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------- 300 (411)
T 4a1s_A 231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE---------- 300 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH----------
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH----------
Confidence 9999999999999999999986443 4889999999999999999999998887766321110
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHH-HHHHHHHHcCCHHHHHHHH
Q 004336 663 LTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH------LLH-LRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 663 ~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~------~~~-l~a~~~~~~g~~~~A~~~~ 735 (760)
....++..+|.++...|++++|+.++++++...++.. ..+ ..+.++...|++++|+..|
T Consensus 301 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 301 --------------VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp --------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1135677889999999999999999999988754331 122 4488888889999999999
Q ss_pred HHHHhcCCCcHH
Q 004336 736 RAALSVDPNDQE 747 (760)
Q Consensus 736 ~~aL~l~P~~~~ 747 (760)
++++++.+...+
T Consensus 367 ~~al~~~~~~~~ 378 (411)
T 4a1s_A 367 EQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHCCHHHH
T ss_pred HHHHHHHhhccc
Confidence 999988776544
No 41
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.89 E-value=2.1e-23 Score=191.95 Aligned_cols=100 Identities=22% Similarity=0.403 Sum_probs=95.8
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEe-cCCCCCHHHHHHHHhccccCccCCCChhhH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDL-SENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~-~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v 255 (760)
.++.+|||+|.|+|++|+|||.|||++|+||++||+++|.| ...+|+| + ++++++|+.+++|+|||++. ++.+||
T Consensus 25 ~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~--~~~~~~f~~ll~~~Ytg~~~-~~~~~~ 100 (127)
T 1r29_A 25 SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDP--EINPEGFNILLDFMYTSRLN-LREGNI 100 (127)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCT--TSCHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred hcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCC--CCCHHHHHHHHHHHcCCCcC-cCHHHH
Confidence 46789999999999999999999999999999999999999 7789999 6 89999999999999999997 999999
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHh
Q 004336 256 LEILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 256 ~~ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
.+|+.+|++|+++.|++.|+.||.+
T Consensus 101 ~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 101 MAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999999975
No 42
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=4.4e-21 Score=203.21 Aligned_cols=256 Identities=13% Similarity=0.072 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..++.+|..+...|++++|+.++ ++++..+|++..+++.+|.++...|++++|+..|+++++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAF------------------EAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56788999999999999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
.+|.+..++..+|.++...|++++|+..+++++...|.+ ..+..+......
T Consensus 84 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 135 (327)
T 3cv0_A 84 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD---------------------------- 135 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------
T ss_pred cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH----------------------------
Confidence 999999999999999999999999999999999999988 333322211111
Q ss_pred HHHHHHH-HH-HHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhc
Q 004336 583 GQALNNL-GS-VYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 658 (760)
Q Consensus 583 ~~a~~~L-g~-~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~ 658 (760)
......+ |. ++...|++++|+..|+++++..|. .++..+|.++...|++++|+..++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~----------------- 198 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA----------------- 198 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH-----------------
Confidence 1122244 44 488889999999999999997765 88999999999999886666666554
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRA 737 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~ 737 (760)
++.+|+++.++..+|.++...|++++|+..+++++...|++...+ ..+.++...|++++|+..+++
T Consensus 199 -------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 199 -------------VELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp -------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 455667777888899999999999999999999999999988776 449999999999999999999
Q ss_pred HHhcCCC------------cHHHHHHHHHh
Q 004336 738 ALSVDPN------------DQEMLELHSRV 755 (760)
Q Consensus 738 aL~l~P~------------~~~~l~~~~r~ 755 (760)
+++.+|+ ++.++..+.++
T Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 266 AIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 9999999 67766555443
No 43
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.88 E-value=1.5e-23 Score=197.11 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=91.1
Q ss_pred CCCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCC--CccceeEecCCCCCHHHHHHHHhccccCccCCCChh
Q 004336 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFME--SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN 253 (760)
Q Consensus 176 ~~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e--~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~ 253 (760)
-.++.+|||+|+|+|++|+|||.|||++|+||++||+++|.| +...+|.|+ ++++++++.+++|+|||++. ++.+
T Consensus 42 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~--~v~~~~f~~lL~fiYtg~~~-i~~~ 118 (144)
T 2ppi_A 42 REESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNED 118 (144)
T ss_dssp TC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECC--SSCHHHHHHHHHHHTTSCCC-CCTT
T ss_pred HhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeC--CCCHHHHHHHHHHHhCCCCC-CCHH
Confidence 357889999999999999999999999999999999999986 677899997 89999999999999999997 9999
Q ss_pred hHHHHHHHHhhhChHhHHHHHHHHHH
Q 004336 254 LLLEILIFANKFCCERLKDACDRKLA 279 (760)
Q Consensus 254 ~v~~ll~~a~~~~~~~~~~~c~~~l~ 279 (760)
||.+||.+|++|+++.|++.|++||.
T Consensus 119 ~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 119 TIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 99999999999999999999999873
No 44
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.88 E-value=1.1e-23 Score=196.66 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=96.2
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||++++.|+ .+|.++ .+|++++|+.+++|+|||++. ++.+||.
T Consensus 32 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~-~~v~~~~~~~lL~~~Ytg~~~-i~~~~v~ 107 (138)
T 2z8h_A 32 KKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLP-EEVTVKGFEPLIQFAYTAKLI-LSKDNVD 107 (138)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECC-TTSCHHHHHHHHHHHHHSCCC-CCTTTHH
T ss_pred hhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeC-CCCCHHHHHHHHHHhcCCCcc-cCHHHHH
Confidence 466799999999999999999999999999999999999875 478886 389999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhhcC
Q 004336 257 EILIFANKFCCERLKDACDRKLASLVA 283 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~~~ 283 (760)
+||.+|++|+++.|++.|+.||...+.
T Consensus 108 ~ll~~A~~~~i~~L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 108 EVCRCVEFLSVHNIEESCFQFLKFKFL 134 (138)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998874
No 45
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=2.7e-21 Score=211.46 Aligned_cols=273 Identities=15% Similarity=0.020 Sum_probs=196.5
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+.++...|..++..|++++|+..|++++...|+++. ....++..+|.++...|++++|+.++
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~--------------- 70 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYH--------------- 70 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHhcCHHHHHHHH---------------
Confidence 3456777888888889999999999999999998752 12367889999999999999999999
Q ss_pred HHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCC-----
Q 004336 462 SVIYQMLES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSH----- 524 (760)
Q Consensus 462 ~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~----- 524 (760)
++++.. .|..+.++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|+
T Consensus 71 ---~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 147 (406)
T 3sf4_A 71 ---HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 147 (406)
T ss_dssp ---HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred ---HHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccc
Confidence 666655 35567899999999999999999999999999886543 4589999999999999
Q ss_pred ---------------HHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHH
Q 004336 525 ---------------CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 589 (760)
Q Consensus 525 ---------------~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~L 589 (760)
+++|+..+++++.+.+.. + .......++.++
T Consensus 148 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------------------~----------~~~~~~~~~~~l 193 (406)
T 3sf4_A 148 GPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL------------------------G----------DRAAQGRAFGNL 193 (406)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHT------------------------T----------CHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc------------------------c----------CcHHHHHHHHHH
Confidence 888888888877652111 0 000015677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc------HHHHHHH
Q 004336 590 GSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN------ASAYEKR 655 (760)
Q Consensus 590 g~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~------~~~~~~~ 655 (760)
|.+|...|++++|+.+|+++++..+. .++.++|.++...|++++|+..++++++..+.. ...+..+
T Consensus 194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 273 (406)
T 3sf4_A 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 273 (406)
T ss_dssp HHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHH
Confidence 88888888888888888888875322 477888888888888888888888887766532 1111111
Q ss_pred ----HhcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 656 ----SEYCDRELTRADLEMVTQLDPLR------VYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 656 ----~~~~~~~~A~~~l~kal~l~p~~------~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
...|++++|+..+++++++.+.. ..++..+|.++...|++++|+..+++++.+
T Consensus 274 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 274 GNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12244445555554444443222 345555666666666666666666666554
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=3.4e-21 Score=203.79 Aligned_cols=286 Identities=15% Similarity=0.038 Sum_probs=224.6
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
...++..|..++..|++++|+..|+++++..|+++. ....++..+|.++...|++++|+.++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~---------------- 66 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYH---------------- 66 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHH--HHHHHHHHHHHHHHHcCCHHHHHHHH----------------
Confidence 345667788888888999999999999999998742 22367889999999999999999999
Q ss_pred HHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCC------
Q 004336 463 VIYQMLES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSH------ 524 (760)
Q Consensus 463 ~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~------ 524 (760)
.+++.. .|..+.++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|+
T Consensus 67 --~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (338)
T 3ro2_A 67 --HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPG 144 (338)
T ss_dssp --HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSS
T ss_pred --HHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccch
Confidence 666554 45567889999999999999999999999999875533 3488999999999999
Q ss_pred --------------HHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHH
Q 004336 525 --------------CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 590 (760)
Q Consensus 525 --------------~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg 590 (760)
+++|+..+++++.+.+.. + .......++..+|
T Consensus 145 ~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~------------------------~----------~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTAL------------------------G----------DRAAQGRAFGNLG 190 (338)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHHH------------------------T----------CHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc------------------------C----------CHHHHHHHHHHHH
Confidence 778877777776542211 0 0001157889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHH
Q 004336 591 SVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRE 662 (760)
Q Consensus 591 ~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~ 662 (760)
.++...|++++|+.+|+++++..+. .++..+|.++...|++++|+..++++++..+......
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------- 260 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA---------- 260 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----------
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh----------
Confidence 9999999999999999999985332 4899999999999999999999998887765321110
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHH-HHHHHHHHcCCHHHHHHHH
Q 004336 663 LTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH------LLH-LRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 663 ~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~------~~~-l~a~~~~~~g~~~~A~~~~ 735 (760)
....++..+|.++...|++++|+..+++++...+... ..+ ..+.++...|++++|...+
T Consensus 261 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 261 --------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp --------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 1135677889999999999999999999998754331 122 4488888899999999999
Q ss_pred HHHHhcCCCcH
Q 004336 736 RAALSVDPNDQ 746 (760)
Q Consensus 736 ~~aL~l~P~~~ 746 (760)
++++++.++..
T Consensus 327 ~~a~~~~~~~~ 337 (338)
T 3ro2_A 327 EKHLEISREVG 337 (338)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHHhhc
Confidence 99999887653
No 47
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.88 E-value=1.8e-23 Score=190.01 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=90.6
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||++++ ..+|+|+ ++++++++.+++|+|||++. ++.+||.
T Consensus 20 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~--~~~~~~f~~ll~~iYtg~~~-~~~~~v~ 92 (119)
T 3b84_A 20 EKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLP--AGFAEIFGLLLDFFYTGHLA-LTSGNRD 92 (119)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEEC--GGGHHHHHHHHHHHHHSCCC-CCTTTHH
T ss_pred hcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHHHH
Confidence 357799999999999999999999999999999999987 5689997 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHh
Q 004336 257 EILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
+|+.+|++|+++.|++.|+.||.+
T Consensus 93 ~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 93 QVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 48
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.87 E-value=3.5e-23 Score=192.47 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=88.7
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|+|+|++|+|||.|||++|+||++||++++ ..+|.|+ ++++++|+.+++|+|||++. ++.+||.
T Consensus 21 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~--~~~~~~f~~lL~fiYtg~~~-i~~~~v~ 93 (135)
T 2yy9_A 21 EKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLP--AGFAEIFGLLLDFFYTGHLA-LTSGNRD 93 (135)
T ss_dssp HTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEEC--GGGHHHHHHHHHHHHHSCCC-CCTTTHH
T ss_pred hcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeC--CCCHHHHHHHHHHHhCCCCC-CCHHHHH
Confidence 467899999999999999999999999999999999987 5689997 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhhc
Q 004336 257 EILIFANKFCCERLKDACDRKLASLV 282 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~~ 282 (760)
+|+.+|++|+++.|++.|+.||...+
T Consensus 94 ~ll~~A~~l~i~~L~~~C~~~l~~~l 119 (135)
T 2yy9_A 94 QVLLAAKELRVPEAVELCQSFQPQTS 119 (135)
T ss_dssp HHHHHHHHTTCHHHHHHHHHCCC---
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999998765
No 49
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.87 E-value=1.5e-22 Score=184.61 Aligned_cols=97 Identities=21% Similarity=0.332 Sum_probs=91.2
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||+++ ..+|+|+ ++++++++.+++|+|||++. ++.+|+.
T Consensus 24 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-~~~~~~~ 95 (121)
T 1buo_A 24 LAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLD--FLSPKTFQQILEYAYTATLQ-AKAEDLD 95 (121)
T ss_dssp HHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHHHSCCC-CCGGGHH
T ss_pred hcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeC--CCCHHHHHHHHHhhcCCCcC-CCHHHHH
Confidence 36779999999999999999999999999999999874 4589997 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhh
Q 004336 257 EILIFANKFCCERLKDACDRKLASL 281 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~ 281 (760)
+++.+|++|+++.|++.|+.||.+.
T Consensus 96 ~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 96 DLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999764
No 50
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.6e-22 Score=182.92 Aligned_cols=97 Identities=22% Similarity=0.323 Sum_probs=89.5
Q ss_pred CccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHH
Q 004336 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLE 257 (760)
Q Consensus 178 ~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ 257 (760)
++.+|||+|+|||++|+|||.|||++|+||++||+++ ...+|.|+-.++++++|+.+++|+|||++. ++.+||.+
T Consensus 19 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~-~~~~~v~~ 93 (116)
T 2vpk_A 19 AGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLN-LDSWNVKE 93 (116)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCC-CCTTTHHH
T ss_pred cCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcc-cCHHHHHH
Confidence 5679999999999999999999999999999999987 355777752279999999999999999997 99999999
Q ss_pred HHHHHhhhChHhHHHHHHHHHH
Q 004336 258 ILIFANKFCCERLKDACDRKLA 279 (760)
Q Consensus 258 ll~~a~~~~~~~~~~~c~~~l~ 279 (760)
|+.+|++|+++.|++.|+.||.
T Consensus 94 ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 94 IHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999985
No 51
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.87 E-value=1.4e-23 Score=192.20 Aligned_cols=99 Identities=18% Similarity=0.286 Sum_probs=89.4
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||+++|.|+ .+|.++ ++|++++++.+++|+|||++. ++.+||.
T Consensus 25 ~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~-~~v~~~~f~~lL~~iYtg~~~-i~~~~v~ 100 (124)
T 2ihc_A 25 KKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLP-EEVTVKGFEPLIQFAYTAKLI-LSKENVD 100 (124)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECC-TTSCHHHHHHHHHHHHHSEEE-EETTTHH
T ss_pred hcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeec-CCcCHHHHHHHHHHhcCCCcc-cCHHHHH
Confidence 356799999999999999999999999999999999999876 478886 389999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHH
Q 004336 257 EILIFANKFCCERLKDACDRKLA 279 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~ 279 (760)
+|+.+|++|+++.|++.|++||.
T Consensus 101 ~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 101 EVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHCCHHHHHHHHHHHh
Confidence 99999999999999999999874
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.86 E-value=1.8e-20 Score=182.64 Aligned_cols=177 Identities=18% Similarity=0.178 Sum_probs=165.9
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+..|+.+|.++..+|+|++|+..|+++++++|++. .++..+|.++...|++++|+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~a~~~~--------------- 62 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV------ETLLKLGKTYMDIGLPNDAIESL--------------- 62 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHH---------------
Confidence 356788999999999999999999999999999995 89999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.+++...|.+..++..+|.++...++++.|+..+++++...|.+..++..+|.++...|++++|+..|+++++++|+
T Consensus 63 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~ 139 (184)
T 3vtx_A 63 ---KKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139 (184)
T ss_dssp ---HHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---HHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHH
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGL 621 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~L 621 (760)
+ +.++.++|.+|...|++++|+.+|+++++++|..+.+++
T Consensus 140 ~----------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~l 179 (184)
T 3vtx_A 140 F----------------------------------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYEL 179 (184)
T ss_dssp C----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCS
T ss_pred h----------------------------------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHH
Confidence 9 789999999999999999999999999999988766655
Q ss_pred H
Q 004336 622 A 622 (760)
Q Consensus 622 a 622 (760)
|
T Consensus 180 a 180 (184)
T 3vtx_A 180 A 180 (184)
T ss_dssp C
T ss_pred H
Confidence 4
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=4.1e-21 Score=198.52 Aligned_cols=258 Identities=10% Similarity=-0.065 Sum_probs=204.7
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 468 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al 468 (760)
++......|++++|+..|++++...|..+ .....++..+|.++...|++++|+.++ ++++
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~------------------~~al 70 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTD--DERAQLLYERGVLYDSLGLRALARNDF------------------SQAL 70 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHH------------------HHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccC--chhHHHHHHHHHHHHHcccHHHHHHHH------------------HHHH
Confidence 34444556799999999999999854332 122478899999999999999999999 9999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHH
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 548 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~l 548 (760)
..+|.++.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++++|++
T Consensus 71 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------ 144 (275)
T 1xnf_A 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND------ 144 (275)
T ss_dssp HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHHHHHH
Q 004336 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFL 627 (760)
Q Consensus 549 a~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~~~~~ 627 (760)
......++ +....|++++|+..|++++...+. .....++.++..
T Consensus 145 ----------------------------------~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 1xnf_A 145 ----------------------------------PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 189 (275)
T ss_dssp ----------------------------------HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT
T ss_pred ----------------------------------hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 22222222 235568999999999998886665 344557777888
Q ss_pred cCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 628 KNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 628 ~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
.++.++|+..+++++...|.. .|.++..+..+|.++...|++++|+..|++++.
T Consensus 190 ~~~~~~a~~~~~~~~~~~~~~--------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 190 NISEQTLMERLKADATDNTSL--------------------------AEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp SSCHHHHHHHHHHHCCSHHHH--------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHhcccccc--------------------------cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888877877777766554411 122346788899999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 708 FKADLHLLHLRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 708 ~~p~~~~~~l~a~~~~~~g~~~~A~~~~ 735 (760)
..|++...+ +.++..+|++++|++.|
T Consensus 244 ~~p~~~~~~--~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 NNVHNFVEH--RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCCTTCHHH--HHHHHHHHHHHHC----
T ss_pred CCchhHHHH--HHHHHHHHHHHhhHHHH
Confidence 999765433 55666778999998887
No 54
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.86 E-value=3.1e-23 Score=190.27 Aligned_cols=98 Identities=21% Similarity=0.295 Sum_probs=91.6
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||++++.| ..+|.+++ ++++++|+.+++|+|||++. ++.+||.
T Consensus 28 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~-~~~~~~f~~~l~~iYtg~~~-~~~~~v~ 103 (125)
T 3ohu_A 28 KKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPE-EVTARGFGPLLQFAYTAKLL-LSRENIR 103 (125)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCT-TCCHHHHHHHHHHHTTSEEE-ECTTTHH
T ss_pred hcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCC-CCCHHHHHHHHHhHcCCceE-ECHHHHH
Confidence 46789999999999999999999999999999999999987 66899982 49999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHH
Q 004336 257 EILIFANKFCCERLKDACDRKL 278 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l 278 (760)
+|+.+|++|+++.|++.|++||
T Consensus 104 ~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 104 EVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHhC
Confidence 9999999999999999998764
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=3.3e-19 Score=185.30 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=65.6
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHH----ccCHHHHHHHHhhhccccccCCc
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~----~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
+.+++.+|.++...|++++|+.+|+++++ |+++ .++..+|.++.. .+++++|+.++
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~------~a~~~lg~~~~~g~~~~~~~~~A~~~~------------ 65 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN------SGCFNLGVLYYQGQGVEKNLKKAASFY------------ 65 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH------HHHHHHHHHHHHTSSSCCCHHHHHHHH------------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH------HHHHHHHHHHHcCCCcCCCHHHHHHHH------------
Confidence 34445555555555555555555555554 3332 455555555555 55555555555
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLR 530 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~ 530 (760)
++++..+ ++.+++.+|.+|.. .+++++|+..|+++++.+ ++.++..+|.+|.. .|++++|+.
T Consensus 66 ------~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~ 135 (273)
T 1ouv_A 66 ------AKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVE 135 (273)
T ss_dssp ------HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ------HHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHH
Confidence 4444442 45555555555555 555555555555555442 44555555555555 555555555
Q ss_pred HHHHHHhh
Q 004336 531 KAEESIQM 538 (760)
Q Consensus 531 ~~~~al~l 538 (760)
+|+++++.
T Consensus 136 ~~~~a~~~ 143 (273)
T 1ouv_A 136 YFTKACDL 143 (273)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 55555543
No 56
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.86 E-value=1.8e-22 Score=183.37 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=88.5
Q ss_pred CccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHH
Q 004336 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLE 257 (760)
Q Consensus 178 ~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ 257 (760)
++.+|||+|.+||++|+|||.|||++|+||++||++ ...+|.++ ++++++|+.+++|+|||++. ++.+||.+
T Consensus 24 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~-----~~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-i~~~~~~~ 95 (119)
T 2q81_A 24 LGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD-----QKDVVHLD--ISNAAGLGQVLEFMYTAKLS-LSPENVDD 95 (119)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH-----CCSGGGGG--GCCHHHHHHHHHHHHHSCCC-CCTTTHHH
T ss_pred cCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC-----CCCEEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHHHHH
Confidence 577999999999999999999999999999999997 34578887 79999999999999999997 99999999
Q ss_pred HHHHHhhhChHhHHHHHHHHHH
Q 004336 258 ILIFANKFCCERLKDACDRKLA 279 (760)
Q Consensus 258 ll~~a~~~~~~~~~~~c~~~l~ 279 (760)
|+.+|++|+++.|++.|++||.
T Consensus 96 ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 96 VLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999985
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=3.7e-19 Score=184.93 Aligned_cols=227 Identities=12% Similarity=0.077 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQ 499 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~Ai~~l~ 499 (760)
.+++.+|.++...|++++|+.++ ++++. |+++.+++.+|.+|.. .+++++|+.+|+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~------------------~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 66 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYF------------------EKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYA 66 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH------------------HHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHH
Confidence 77788888888888888888888 77776 6777888888888888 888888888888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhh
Q 004336 500 LARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC 575 (760)
Q Consensus 500 kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~ 575 (760)
++++.+ ++.+++.+|.++.. .|++++|+.+|+++++.+ +
T Consensus 67 ~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~--------------------------------- 109 (273)
T 1ouv_A 67 KACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y--------------------------------- 109 (273)
T ss_dssp HHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------------------------------
T ss_pred HHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---------------------------------
Confidence 888774 67888888888888 888888888888887652 3
Q ss_pred hHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccC
Q 004336 576 PSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAHQGLARVHFL----KNNKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 576 ~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~----~g~~~~A~~~l~~al~~~~~ 647 (760)
..+++++|.+|.. .+++++|+.+|+++++.++..++..+|.+|.. .+++++|+.+|+++++.
T Consensus 110 -------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--- 179 (273)
T 1ouv_A 110 -------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--- 179 (273)
T ss_dssp -------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred -------ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---
Confidence 5678888888888 88888888888888888877888888888887 77776666666655433
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 004336 648 NASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAIAFKADLHLLHLRAAFHE 723 (760)
Q Consensus 648 ~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~----~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~ 723 (760)
.++.++..+|.+|.. .+++++|+..|+++++..| .......+.++.
T Consensus 180 -----------------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~ 229 (273)
T 1ouv_A 180 -----------------------------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQY 229 (273)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred -----------------------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 235677888999999 9999999999999998866 223334477777
Q ss_pred H----cCCHHHHHHHHHHHHhcCCCcHH
Q 004336 724 H----TGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 724 ~----~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
. .+++++|+.+|+++++.+|+++.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 7 79999999999999999887654
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=3.5e-20 Score=187.82 Aligned_cols=215 Identities=14% Similarity=0.062 Sum_probs=172.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 553 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~ 553 (760)
.+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA----------- 90 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----------
Confidence 467889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCH
Q 004336 554 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNK 631 (760)
Q Consensus 554 ~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~ 631 (760)
..++..+|.++...|++++|+..|+++++..|. .++..+|.++...|++
T Consensus 91 -----------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 91 -----------------------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH
T ss_pred -----------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 788899999999999999999999999997665 8899999999999998
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 632 TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 632 ~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
++|+..+++++ +.+|.+...+..+|.++...|++++|+..+++++...|+
T Consensus 142 ~~A~~~~~~~~------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 142 KLALPYLQRAV------------------------------ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHHHHHH------------------------------HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHH------------------------------HhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 66666666554 445566677888899999999999999999999999999
Q ss_pred cHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcc
Q 004336 712 LHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSH 758 (760)
Q Consensus 712 ~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~~ 758 (760)
+...+ ..+.++...|++++|+..++++++++|+++.++..+.++...
T Consensus 192 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 88776 448899999999999999999999999999998888777654
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=3.5e-19 Score=177.65 Aligned_cols=213 Identities=11% Similarity=-0.022 Sum_probs=189.9
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
..|.++.+++.+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..+++++...|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------- 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS------- 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------
Confidence 3577889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hcch--HHHHHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALK--IRHT--RAHQGLARV 624 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~-g~~~eA~~~~~~Al~--~~~~--~a~~~La~~ 624 (760)
..++..+|.++... |++++|+..|+++++ ..+. .++..+|.+
T Consensus 76 ---------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 76 ---------------------------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp ---------------------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred ---------------------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 77889999999999 999999999999998 4443 789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 625 HFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSR 704 (760)
Q Consensus 625 ~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~k 704 (760)
+...|++++|+..++++ ++.+|.++..+..+|.++...|++++|+..+++
T Consensus 123 ~~~~~~~~~A~~~~~~~------------------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRS------------------------------LAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHTTCHHHHHHHHHHH------------------------------HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH------------------------------HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999986666666655 445566677788889999999999999999999
Q ss_pred HHHcCC-CcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004336 705 AIAFKA-DLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 705 al~~~p-~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
++...| ++...+ ..+.++...|++++|...++.+++.+|+++.+...+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999 887665 558888888999999999999999999999887665
No 60
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.85 E-value=4.6e-22 Score=180.25 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=84.9
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|+|||++|+|||.|||++|+||++ ...+|.|+ ||++++|+.+++|+|||++. ++.+||+
T Consensus 26 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~--~v~~~~f~~ll~fiYtg~~~-i~~~~v~ 93 (119)
T 3m5b_A 26 LRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGE--GISPSTFAQLLNFVYGESVE-LQPGELR 93 (119)
T ss_dssp HTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCS--SCCHHHHHHHHHHHTTCCEE-ECGGGHH
T ss_pred hcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeC--CCCHHHHHHHHHHHcCCCcC-cCHHHHH
Confidence 467899999999999999999999999999996 34679997 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHh
Q 004336 257 EILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
+||.+|++|+++.|++.|++++..
T Consensus 94 ~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 94 PLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 999999999999999999998764
No 61
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=1.4e-18 Score=199.12 Aligned_cols=345 Identities=10% Similarity=-0.013 Sum_probs=252.7
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
..+|..++. +...|++++|...|+++++.+|.+. ..|..++......|++++|...+
T Consensus 13 ~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~------~~w~~~~~~~~~~~~~~~a~~~~---------------- 69 (530)
T 2ooe_A 13 LDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSG------RFWKLYIEAEIKAKNYDKVEKLF---------------- 69 (530)
T ss_dssp HHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCH------HHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHhcCCHHHHHHHH----------------
Confidence 445555555 3556788888888888888888885 78888888888888888888888
Q ss_pred HHHHHHHhCCCcHHHHHHHHH-HHHHcCCHHHHHH----HHHHHHHh---CCCcHHHHHHHHHHHHH---------CCCH
Q 004336 463 VIYQMLESDAPKGVLYFRQSL-LLLRLNCPEAAMR----SLQLARQH---AASDHERLVYEGWILYD---------TSHC 525 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~Ai~----~l~kal~~---~p~~~~a~~~Lg~i~~~---------~g~~ 525 (760)
++++...| +..+|..++. .....|++++|.+ .|++++.. +|.....|..++..... .|++
T Consensus 70 --~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 70 --QRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp --HHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred --HHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 88888888 5677777775 3345677766655 77777654 45667777777776654 6788
Q ss_pred HHHHHHHHHHHhhcCCh---HHHHHHHHH--------------------------HHc-----ccC-------CCCcc--
Q 004336 526 EEGLRKAEESIQMKRSF---EAFFLKAYA--------------------------LAD-----SSQ-------DSSCS-- 562 (760)
Q Consensus 526 eeAl~~~~~al~l~p~~---~a~~~la~~--------------------------l~~-----~~~-------~~~~~-- 562 (760)
++|...|+++++ .|.. ..|...... +.. ... .+...
T Consensus 147 ~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 147 TAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 888888888888 4553 222111110 000 000 00000
Q ss_pred -hhhhh---------------------HHHHHHhhhHhhccH----HHHHHHHHHHHHH-------cCCHH-------HH
Q 004336 563 -STVVS---------------------LLEDALKCPSDRLRK----GQALNNLGSVYVD-------CGQLD-------LA 602 (760)
Q Consensus 563 -~~~~~---------------------~leeAl~~~~~~l~~----~~a~~~Lg~~y~~-------~g~~~-------eA 602 (760)
..... ...+++..|++++.. +.+|..+|..+.. .|+++ +|
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 00000 112445566666432 8899999999886 79987 99
Q ss_pred HHHHHHHHh-hcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH-HHHHHHH----hcCCHHHHHHHHHHHHhh
Q 004336 603 ADCYSNALK-IRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA-SAYEKRS----EYCDRELTRADLEMVTQL 674 (760)
Q Consensus 603 ~~~~~~Al~-~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~-~~~~~~~----~~~~~~~A~~~l~kal~l 674 (760)
+..|++|++ ..|. .+|..+|.++...|++++|...|+++++..|.+. .++...+ ..|+.++|...|+++++.
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999997 5554 8999999999999999999999999999998764 4555443 357889999999999999
Q ss_pred CCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHH----H
Q 004336 675 DPLRVYPYRYRAAV-LMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQE----M 748 (760)
Q Consensus 675 ~p~~~~~~~~La~~-~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~----~ 748 (760)
.|.....+...+.+ +...|++++|...|+++++..|+++.+++. +.++...|++++|...|++++...|.+++ +
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 99888877776665 446899999999999999999999988855 77888889999999999999998776654 5
Q ss_pred HHHHHH
Q 004336 749 LELHSR 754 (760)
Q Consensus 749 l~~~~r 754 (760)
+..+.+
T Consensus 466 w~~~~~ 471 (530)
T 2ooe_A 466 WARFLA 471 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 62
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=6.3e-20 Score=185.91 Aligned_cols=211 Identities=13% Similarity=0.095 Sum_probs=178.2
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+..++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~-------------- 80 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA------IPYINFANLLSSVNELERALAFY-------------- 80 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCH------HHHHHHHHHHHHTTCHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCCHHHHHHHH--------------
Confidence 3567788889999999999999999999999999995 89999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
++++..+|.+..+++.+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..|
T Consensus 81 ----~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 81 ----DKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp ----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred ----HHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHH
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAH 618 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~ 618 (760)
++ ..++..+|.++...|++++|+..|+++++..|. .++
T Consensus 157 ~~----------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 196 (243)
T 2q7f_A 157 ND----------------------------------------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196 (243)
T ss_dssp TC----------------------------------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred cc----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 88 778899999999999999999999999997665 889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH
Q 004336 619 QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 655 (760)
Q Consensus 619 ~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 655 (760)
..+|.++...|++++|...++++++..|++..++..+
T Consensus 197 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 197 YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 9999999999999888888888888888776666555
No 63
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.85 E-value=2.2e-19 Score=183.51 Aligned_cols=214 Identities=14% Similarity=0.023 Sum_probs=190.0
Q ss_pred HhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHH
Q 004336 469 ESDAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 547 (760)
Q Consensus 469 ~~~p~~-~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~ 547 (760)
..+|.+ +.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----- 104 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----- 104 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-----
Confidence 345655 78999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcch--HHHHHHHH
Q 004336 548 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK--IRHT--RAHQGLAR 623 (760)
Q Consensus 548 la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--~~~~--~a~~~La~ 623 (760)
..++..+|.++...|++++|+.+|+++++ ..|. .++..+|.
T Consensus 105 -----------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 105 -----------------------------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 78889999999999999999999999998 5554 78899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 624 VHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 703 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ 703 (760)
++...|++++|+..++++ ++.+|.+..++..+|.++...|++++|+..++
T Consensus 150 ~~~~~g~~~~A~~~~~~~------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKS------------------------------LRLNRNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHTTCHHHHHHHHHHH------------------------------HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH------------------------------HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999986666666554 44556667778888999999999999999999
Q ss_pred HHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004336 704 RAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 704 kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
+++...|++...+ ..+.++...|++++|.+.++++++..|+++.....+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999988766 458888889999999999999999999999877654
No 64
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.6e-22 Score=186.56 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=86.0
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||+++ ...+|.|++ ++++++|+.+++|+|||++. ++.+||.
T Consensus 29 ~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~-~~~~~~f~~ll~~iYtg~~~-i~~~~~~ 102 (129)
T 3ga1_A 29 LQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPA-AVQPQSFQQILSFCYTGRLS-MNVGDQD 102 (129)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCT-TCCHHHHHHHHHHHHHSEEE-CCTTTHH
T ss_pred hcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECC-CCCHHHHHHHHHHHhCCccc-cCHHHHH
Confidence 36779999999999999999999999999999999987 667899963 79999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhh
Q 004336 257 EILIFANKFCCERLKDACDRKLASL 281 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~ 281 (760)
+||.+|++|+++.|++.|++||.+.
T Consensus 103 ~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 103 LLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999764
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.84 E-value=1.9e-19 Score=175.28 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=148.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 552 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l 552 (760)
+++.+|+++|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++...|+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---------- 72 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---------- 72 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh----------
Confidence 5678899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCC
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNN 630 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~ 630 (760)
..++..+|.++...++++.|...+.++++..|. .++..+|.++...|+
T Consensus 73 ------------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 73 ------------------------------AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE 122 (184)
T ss_dssp ------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC
Confidence 778888899999999999999999999887666 788888888888888
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 631 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
+++|+..| +++++++|.++.++.++|.+|..+|++++|+..|+++++.+|
T Consensus 123 ~~~A~~~~------------------------------~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 123 HDKAIEAY------------------------------EKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHH------------------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred chhHHHHH------------------------------HHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 85554444 455566667777888889999999999999999999998888
Q ss_pred CcHH
Q 004336 711 DLHL 714 (760)
Q Consensus 711 ~~~~ 714 (760)
+++.
T Consensus 173 ~~a~ 176 (184)
T 3vtx_A 173 KKAK 176 (184)
T ss_dssp HHHH
T ss_pred cCHH
Confidence 7654
No 66
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.84 E-value=6.1e-19 Score=180.22 Aligned_cols=211 Identities=16% Similarity=0.051 Sum_probs=196.8
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+.+++.+|..+...|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 34 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~------------- 94 (252)
T 2ho1_A 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA------DAHAALAVVFQTEMEPKLADEEY------------- 94 (252)
T ss_dssp HHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH------HHHHHHHHHHHHcCCHHHHHHHH-------------
Confidence 34588899999999999999999999999999999985 89999999999999999999999
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~--~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.+++..+|.+..+++.+|.++...|++++|+..|++++. ..|.+..++..+|.++...|++++|+..++++++
T Consensus 95 -----~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 95 -----RKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp -----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--
Q 004336 538 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-- 615 (760)
Q Consensus 538 l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-- 615 (760)
..|.+ ..++..+|.++...|++++|+..|+++++..|.
T Consensus 170 ~~~~~----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 170 LNRNQ----------------------------------------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp HCSCC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred cCccc----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 99988 788899999999999999999999999997665
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHH
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEK 654 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~ 654 (760)
.++..++.++...|++++|...++++++..|+.......
T Consensus 210 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 210 RSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 788999999999999999999999999988877665543
No 67
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=4.9e-19 Score=186.99 Aligned_cols=247 Identities=12% Similarity=0.014 Sum_probs=200.2
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
.+.+.++..|+..|++++|+..++.. +|.. ..++..++..+...+++++|+..+
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~------~~a~~~la~~~~~~~~~~~A~~~l----------------- 88 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE------LQAVRMFAEYLASHSRRDAIVAEL----------------- 88 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH------HHHHHHHHHHHHCSTTHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhccc---CChh------HHHHHHHHHHHcCCCcHHHHHHHH-----------------
Confidence 34556677888888999999877652 3333 478888999999999999999999
Q ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 464 IYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 464 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
++++.. +|+++.+++.+|.++...|++++|++.|++ |.+.+++..+|.++..+|++++|+..++++++.+|+
T Consensus 89 -~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 162 (291)
T 3mkr_A 89 -DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162 (291)
T ss_dssp -HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC
Confidence 888876 599999999999999999999999999998 899999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhcch--HH
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN--LGSVYVDCGQLDLAADCYSNALKIRHT--RA 617 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~--Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a 617 (760)
. ...... +..++...|++++|+..|+++++..|. .+
T Consensus 163 ~----------------------------------------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~ 202 (291)
T 3mkr_A 163 A----------------------------------------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL 202 (291)
T ss_dssp C----------------------------------------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHH
T ss_pred c----------------------------------------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHH
Confidence 7 111111 112334568999999999999997666 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q 004336 618 HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 697 (760)
Q Consensus 618 ~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~e 697 (760)
++++|.++...|++++|+. .++++++.+|+++.++.++|.++...|+.++
T Consensus 203 ~~~la~~~~~~g~~~eA~~------------------------------~l~~al~~~p~~~~~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEG------------------------------VLQEALDKDSGHPETLINLVVLSQHLGKPPE 252 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHH------------------------------HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHcCCHHHHHH------------------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHH
Confidence 9999999999999855554 4555666677888888889999999999976
Q ss_pred -HHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 698 -AIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 698 -Ai~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~ 735 (760)
+..+++++++..|+++.+. .+..+.+.+++|..-|
T Consensus 253 aa~~~~~~~~~~~P~~~~~~---d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 253 VTNRYLSQLKDAHRSHPFIK---EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHHc
Confidence 5688899999999998664 2344445566665544
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.84 E-value=1.6e-19 Score=204.21 Aligned_cols=215 Identities=16% Similarity=0.161 Sum_probs=190.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH-HHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 396 RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW-TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~-~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
.+++++|+..++++....|+.. .+++.+|.++...|++ ++|+.++ ++++..+|++
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a------~~~~~lg~~~~~~g~~~~~A~~~~------------------~~al~~~p~~ 136 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEA------QALMLKGKALNVTPDYSPEAEVLL------------------SKAVKLEPEL 136 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCH------HHHHHHHHHHTSSSSCCHHHHHHH------------------HHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhccCchhH------HHHHHHHHHHHhccccHHHHHHHH------------------HHHHhhCCCC
Confidence 3457888888998888888885 9999999999999999 9999999 9999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhhcCChHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT---------SHCEEGLRKAEESIQMKRSFEAF 545 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~---------g~~eeAl~~~~~al~l~p~~~a~ 545 (760)
+.+++.+|.+|...|++++|+..|+++++++|+ ..++..+|.++... |++++|+..|+++++++|++
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--- 212 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--- 212 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---
Confidence 999999999999999999999999999999999 79999999999999 99999999999999999999
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhcc---
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC--------GQLDLAADCYSNALKIRH--- 614 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~--------g~~~eA~~~~~~Al~~~~--- 614 (760)
..+++++|.+|... |++++|+.+|+++++.+|
T Consensus 213 -------------------------------------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 213 -------------------------------------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 77888888888888 999999999999999877
Q ss_pred h--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 004336 615 T--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDS 692 (760)
Q Consensus 615 ~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~ 692 (760)
. .+++++|.+|...|++++|+..|+ ++++++|++..++..++.++...
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~------------------------------~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFS------------------------------QAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHH------------------------------HHHHHCTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHH------------------------------HHHHhCCCCHHHHHHHHHHHHHH
Confidence 4 899999999999998855555554 55556667777778889999999
Q ss_pred CCHHHHHHHHHHH
Q 004336 693 HKENEAIAELSRA 705 (760)
Q Consensus 693 g~~~eAi~~l~ka 705 (760)
|++++|++.+.+.
T Consensus 306 g~~~eAi~~~~~~ 318 (474)
T 4abn_A 306 SRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHhccc
Confidence 9999988866543
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.84 E-value=1.5e-18 Score=173.17 Aligned_cols=211 Identities=15% Similarity=0.034 Sum_probs=187.1
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+.+++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~------------- 65 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE------LAWLVRAEIYQYLKVNDKAQESF------------- 65 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH-------------
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch------HHHHHHHHHHHHcCChHHHHHHH-------------
Confidence 34567788888899999999999999999999999985 88899999999999999999999
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRL-NCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~Ai~~l~kal~--~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
.+++..+|.+..+++.+|.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..+++++
T Consensus 66 -----~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 66 -----RQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp -----HHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----HHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999 667778999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-h
Q 004336 537 QMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-T 615 (760)
Q Consensus 537 ~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~-~ 615 (760)
+..|++ ..++..+|.++...|++++|+..|+++++..| .
T Consensus 141 ~~~~~~----------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 180 (225)
T 2vq2_A 141 AAQPQF----------------------------------------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180 (225)
T ss_dssp HHSTTC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSC
T ss_pred HhCCCC----------------------------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999888 67888899999999999999999999999766 4
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHH
Q 004336 616 --RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEK 654 (760)
Q Consensus 616 --~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~ 654 (760)
..+..++.++...|+.++|..+++.+.+..|++......
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 181 QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 777888888899999988888888888888876655443
No 70
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=2.4e-18 Score=197.09 Aligned_cols=361 Identities=13% Similarity=0.022 Sum_probs=264.2
Q ss_pred CChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHH-HHHHccCH
Q 004336 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHML-VREHIDNW 439 (760)
Q Consensus 361 ~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~-l~~~~g~~ 439 (760)
..+.+...+++.++. .+.....|...+......|++++|+..|++++...| +. ..|..++. +....|++
T Consensus 27 ~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~------~lw~~~~~~~~~~~~~~ 96 (530)
T 2ooe_A 27 PIDKARKTYERLVAQ---FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI------DLWKCYLSYVRETKGKL 96 (530)
T ss_dssp CHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH------HHHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch------HHHHHHHHHHHHHccch
Confidence 444555566665543 345567788899999999999999999999999999 43 56666663 44556777
Q ss_pred HHHHHHHhhhccccccCCcCcHHHHHHHHH---hCCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCC
Q 004336 440 TIADCWLQLYDRWSSVDDIGSLSVIYQMLE---SDAPKGVLYFRQSLLLLR---------LNCPEAAMRSLQLARQHAAS 507 (760)
Q Consensus 440 ~~A~~~l~l~~~~~~~~d~~sl~~~~~al~---~~p~~~~~~~~la~~~~~---------~g~~~~Ai~~l~kal~~~p~ 507 (760)
+.|...+ ...+++++. .+|.+..+|...+..... .|++++|...|+++++ .|.
T Consensus 97 ~~a~~~~--------------~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~ 161 (530)
T 2ooe_A 97 PSYKEKM--------------AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPM 161 (530)
T ss_dssp TTHHHHH--------------HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCC
T ss_pred hhHHHHH--------------HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chh
Confidence 7666533 122255544 345667777777766554 6777777777777777 354
Q ss_pred cH--HHHHHH---------------------------------------------------------------HHHHHHC
Q 004336 508 DH--ERLVYE---------------------------------------------------------------GWILYDT 522 (760)
Q Consensus 508 ~~--~a~~~L---------------------------------------------------------------g~i~~~~ 522 (760)
.. ..|... ..+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 31 111110 0011111
Q ss_pred ------CCH----HHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccC---CCCcchhhhhHHHHHHhhhHhhcc---H--H
Q 004336 523 ------SHC----EEGLRKAEESIQMKRSF-EAFFLKAYALADSSQ---DSSCSSTVVSLLEDALKCPSDRLR---K--G 583 (760)
Q Consensus 523 ------g~~----eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~---~~~~~~~~~~~leeAl~~~~~~l~---~--~ 583 (760)
++. ++|+..|++++..+|.+ ++|+.+|..+..... ..+.........++|+..+++++. + .
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 122 36778999999999999 999999988875100 000111000112377888877753 2 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH-----
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----- 655 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~----- 655 (760)
.+|..+|.++...|++++|...|+++++..|. .+|..++.++.+.|++++|...|+++++..|.....+...
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 89999999999999999999999999997764 5899999999999999999999999999888654443321
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHH-HHHHHHcCCHHH
Q 004336 656 SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH----LLHLR-AAFHEHTGDVLG 730 (760)
Q Consensus 656 ~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~----~~~l~-a~~~~~~g~~~~ 730 (760)
...|+.++|...|+++++.+|+++..|..++..+...|+.++|...|++++...|.++ .++.. ..+....|+.+.
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2468999999999999999999999999999999999999999999999999876554 35544 666777899999
Q ss_pred HHHHHHHHHhcCCCcH
Q 004336 731 ALRDCRAALSVDPNDQ 746 (760)
Q Consensus 731 A~~~~~~aL~l~P~~~ 746 (760)
+...++++++..|+++
T Consensus 482 ~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 482 ILKVEKRRFTAFREEY 497 (530)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCchhc
Confidence 9999999999998543
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.83 E-value=1.7e-18 Score=174.82 Aligned_cols=210 Identities=10% Similarity=0.019 Sum_probs=176.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p-~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++++|.++...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------- 75 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL-------- 75 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH--------
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch--------
Confidence 56779999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---------HHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---------RAHQGL 621 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---------~a~~~L 621 (760)
..++..+|.+|...|++++|+..|+++++..|. .++..+
T Consensus 76 --------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 123 (228)
T 4i17_A 76 --------------------------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE 123 (228)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 789999999999999999999999999997776 346677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPL--RVYPYRYRAAVLMDSHKENEAI 699 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~--~~~~~~~La~~~~~~g~~~eAi 699 (760)
|.++...|++ ++|+..|+++++++|+ ++.++.++|.++...| .
T Consensus 124 g~~~~~~~~~------------------------------~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~ 168 (228)
T 4i17_A 124 GQKFQQAGNI------------------------------EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----A 168 (228)
T ss_dssp HHHHHHTTCH------------------------------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----H
T ss_pred hHHHHHhccH------------------------------HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----H
Confidence 7777776666 5555555566666677 6778888899987655 4
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 700 AELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 700 ~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
..++++..+.+.....+ .+......+.+++|+..|+++++++|++++++..+.+++.
T Consensus 169 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 169 DVLRKATPLASSNKEKY-ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHGGGTTTCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 45667777766664333 3334445588999999999999999999999999988865
No 72
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=196.99 Aligned_cols=287 Identities=14% Similarity=0.097 Sum_probs=207.9
Q ss_pred CCChhHHHHHHHHHHHHHh-HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC
Q 004336 360 PRSDKTVCFLERLLESAET-DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN 438 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~-~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~ 438 (760)
+..+.+...+++....... ....+.+++.+|.+++..|++++|+..|++++.+.+..........++..+|.++...|+
T Consensus 23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 102 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC
Confidence 3455666777776665433 334578899999999999999999999999988754333233345789999999999999
Q ss_pred HHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCC--------------------HH
Q 004336 439 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNC--------------------PE 492 (760)
Q Consensus 439 ~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~ 492 (760)
+++|+.++ .+++...|.. +.++..+|.++...|+ ++
T Consensus 103 ~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 103 FDEAIVCC------------------QRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHH------------------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHH------------------HHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 99999999 7777765432 5689999999999999 99
Q ss_pred HHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhh
Q 004336 493 AAMRSLQLARQH------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTV 565 (760)
Q Consensus 493 ~Ai~~l~kal~~------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~ 565 (760)
+|+..+++++.+ .|....++..+|.++...|++++|+..+++++++.|.. ..
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------- 223 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------- 223 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------------------
Confidence 999999999886 34446789999999999999999999999999875543 10
Q ss_pred hhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHcCCHHHHHHH
Q 004336 566 VSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 566 ~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~~~g~~~~A~~~ 637 (760)
.....++.++|.+|...|++++|+.+|+++++..+. .++..+|.++...|++++|+..
T Consensus 224 --------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 224 --------------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp --------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 000346666777777777777777777777664221 4666777777777777777777
Q ss_pred HHHHHHhccCc------HHHHHHH----HhcCCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHH
Q 004336 638 MTKLIKKARNN------ASAYEKR----SEYCDRELTRADLEMVTQLD------PLRVYPYRYRAAVLMDSHKENEAI 699 (760)
Q Consensus 638 l~~al~~~~~~------~~~~~~~----~~~~~~~~A~~~l~kal~l~------p~~~~~~~~La~~~~~~g~~~eAi 699 (760)
++++++..+.. ..++..+ ...|++++|+..+++++++. +....++..+|.++...|+...+.
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 77776665422 2222222 23367777777777776663 233567888999999888765433
No 73
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.82 E-value=1.1e-20 Score=170.49 Aligned_cols=89 Identities=16% Similarity=0.237 Sum_probs=82.8
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||+++ ..+|.++ ++++++|+.+++|+|||++..++.+||.
T Consensus 27 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~--~~~~~~f~~~l~~~Ytg~~~~~~~~~~~ 99 (116)
T 3fkc_A 27 GHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELS--FIRAEIFAEILNYIYSSKIVRVRSDLLD 99 (116)
T ss_dssp HHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHTTSCCCSCCHHHHH
T ss_pred hcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC--CCCHHHHHHHHHhhcCCCcCCCCHHHHH
Confidence 46779999999999999999999999999999999986 5689997 8999999999999999999339999999
Q ss_pred HHHHHHhhhChHhHHH
Q 004336 257 EILIFANKFCCERLKD 272 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~ 272 (760)
++|.+|++|+++.|++
T Consensus 100 ~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 100 ELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHhCccccCc
Confidence 9999999999999874
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=9.6e-19 Score=185.94 Aligned_cols=252 Identities=9% Similarity=-0.086 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHH-------ccCH-------HHHHHHHhhhccccccCCcCcHHHHH
Q 004336 400 DEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH-------IDNW-------TIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 400 ~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~-------~g~~-------~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
++|+..|++++..+|+++ .+|+.+|.++.. .|++ ++|...+ +
T Consensus 33 ~~a~~~~~~al~~~p~~~------~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~------------------~ 88 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHP------DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY------------------E 88 (308)
T ss_dssp HHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------------------H
T ss_pred HHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH------------------H
Confidence 789999999999999996 888888888764 4775 7888888 9
Q ss_pred HHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 466 QMLE-SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 466 ~al~-~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~-a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
+++. .+|++..+|..+|.++...|++++|+..|+++++..|.++. +|..+|.++...|++++|+..|+++++..|..
T Consensus 89 rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~- 167 (308)
T 2ond_A 89 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR- 167 (308)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-
Confidence 9999 69999999999999999999999999999999999999887 89999999999999999999999999988877
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcch--HHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV-DCGQLDLAADCYSNALKIRHT--RAHQG 620 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~-~~g~~~eA~~~~~~Al~~~~~--~a~~~ 620 (760)
..++...+.+.. ..|++++|...|+++++..|. .++..
T Consensus 168 ---------------------------------------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 208 (308)
T 2ond_A 168 ---------------------------------------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA 208 (308)
T ss_dssp ---------------------------------------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 344444444433 369999999999999997665 88888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHH
Q 004336 621 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPL-RVYPYRYRAAVLMDSHKENEAI 699 (760)
Q Consensus 621 La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~-~~~~~~~La~~~~~~g~~~eAi 699 (760)
++..+...|++++|...|++++...+ ++|+ ....|..++..+...|++++|.
T Consensus 209 ~~~~~~~~g~~~~A~~~~~~al~~~~---------------------------l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 209 YIDYLSHLNEDNNTRVLFERVLTSGS---------------------------LPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHSSS---------------------------SCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhccC---------------------------CCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 89888888888777666666555311 1332 4567777788899999999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 004336 700 AELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHS 753 (760)
Q Consensus 700 ~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~ 753 (760)
..++++++..|++......+.+ ..-.+.+.++|++++.++.++
T Consensus 262 ~~~~~a~~~~p~~~~~~~~~~~-----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 262 KVEKRRFTAFREEYEGKETALL-----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHHHHHHHHTTTTTSSCHHHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred HHHHHHHHHcccccccchHHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence 9999999999986532211222 112267889999999988653
No 75
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.81 E-value=5e-19 Score=187.05 Aligned_cols=277 Identities=14% Similarity=0.108 Sum_probs=216.4
Q ss_pred CCChhHHHHHHHHHHHHHh-HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC
Q 004336 360 PRSDKTVCFLERLLESAET-DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN 438 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~-~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~ 438 (760)
...+.+...+++..+.... ....+..+..+|.++...|++++|+..+++++...+..........++..+|.++...|+
T Consensus 19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 3455666666766655333 344578899999999999999999999999988743322223335788999999999999
Q ss_pred HHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCC--------------------HH
Q 004336 439 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNC--------------------PE 492 (760)
Q Consensus 439 ~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~ 492 (760)
+++|+.++ .+++...+.. ..++..+|.++...|+ ++
T Consensus 99 ~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 99 FDEAIVCC------------------QRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHH------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHH------------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 99999999 7776654432 4589999999999999 99
Q ss_pred HHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhh
Q 004336 493 AAMRSLQLARQH------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 566 (760)
Q Consensus 493 ~Ai~~l~kal~~------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~ 566 (760)
+|+..+++++.. .+....++..+|.++...|++++|+..+++++++.+..
T Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------ 216 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------------------ 216 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc------------------------
Confidence 999999999876 23345688999999999999999999999999765433
Q ss_pred hHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHcCCHHHHHHHH
Q 004336 567 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEEM 638 (760)
Q Consensus 567 ~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~~~g~~~~A~~~l 638 (760)
+.. .....++..+|.++...|++++|+.+|++++...+. .++..+|.++...|++++|...+
T Consensus 217 ~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (338)
T 3ro2_A 217 GDK----------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 286 (338)
T ss_dssp TCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCh----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 000 001568899999999999999999999999985322 68889999999999999999999
Q ss_pred HHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 004336 639 TKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 712 (760)
Q Consensus 639 ~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~ 712 (760)
+++++..+..... +....++..+|.++...|++++|+..+++++.+.+..
T Consensus 287 ~~a~~~~~~~~~~------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 287 LKHLAIAQELKDR------------------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHTCH------------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcCCc------------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9988776522110 1113467788999999999999999999999987653
No 76
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.81 E-value=9.1e-19 Score=192.58 Aligned_cols=279 Identities=14% Similarity=0.098 Sum_probs=223.7
Q ss_pred CCChhHHHHHHHHHHHHHh-HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC
Q 004336 360 PRSDKTVCFLERLLESAET-DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN 438 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~-~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~ 438 (760)
+..+.+...+++..+.... ....+.+++.+|.++...|++++|+..|++++..............++..+|.++...|+
T Consensus 62 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 141 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGR 141 (411)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 3455666777776665333 344578899999999999999999999999998842222222335889999999999999
Q ss_pred HHHHHHHHhhhccccccCCcCcHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCC-----------------HHHHH
Q 004336 439 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLES------DAPKGVLYFRQSLLLLRLNC-----------------PEAAM 495 (760)
Q Consensus 439 ~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~Ai 495 (760)
+++|+.++ .+++.. .|....++..+|.+|...|+ +++|+
T Consensus 142 ~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 142 FDEAAICC------------------ERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHH------------------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHH------------------HHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 99999999 777666 56678899999999999999 99999
Q ss_pred HHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHH
Q 004336 496 RSLQLARQHA------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 569 (760)
Q Consensus 496 ~~l~kal~~~------p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~l 569 (760)
..+++++++. +....++..+|.++...|++++|+..+++++++.+.. +..
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------------~~~ 259 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF------------------------GDR 259 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------------TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc------------------------CCc
Confidence 9999998763 3345689999999999999999999999999876543 000
Q ss_pred HHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 570 EDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--------TRAHQGLARVHFLKNNKTTAYEEMTKL 641 (760)
Q Consensus 570 eeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~--------~~a~~~La~~~~~~g~~~~A~~~l~~a 641 (760)
.....++.++|.+|...|++++|+.+|++++...+ ..++..+|.++...|++++|+..++++
T Consensus 260 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 260 ----------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp ----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00046889999999999999999999999998544 278899999999999999999999998
Q ss_pred HHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 004336 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL 714 (760)
Q Consensus 642 l~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~ 714 (760)
++..+..... +....++..+|.++...|++++|+.++++++.+.+....
T Consensus 330 l~~~~~~~~~------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 330 LAIAQELGDR------------------------IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHTCH------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHCCCh------------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 8776522110 112356788999999999999999999999998876543
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.81 E-value=6.7e-19 Score=199.08 Aligned_cols=203 Identities=12% Similarity=-0.007 Sum_probs=181.3
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCP-EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~-~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
.+.....|.++.+++.+|.++...|++ ++|+..|+++++.+|++..++..+|.+|...|++++|+..|+++++++|+.
T Consensus 92 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 170 (474)
T 4abn_A 92 EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK- 170 (474)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCH-
T ss_pred HHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCH-
Confidence 788888999999999999999999999 999999999999999999999999999999999999999999999999886
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhcc
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC---------GQLDLAADCYSNALKIRH 614 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~---------g~~~eA~~~~~~Al~~~~ 614 (760)
.++.++|.++... |++++|+..|+++++.+|
T Consensus 171 ----------------------------------------~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 210 (474)
T 4abn_A 171 ----------------------------------------VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV 210 (474)
T ss_dssp ----------------------------------------HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ----------------------------------------HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence 5566677777777 999999999999999877
Q ss_pred h--HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CChHH
Q 004336 615 T--RAHQGLARVHFLK--------NNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDP---LRVYP 681 (760)
Q Consensus 615 ~--~a~~~La~~~~~~--------g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p---~~~~~ 681 (760)
. .+++.+|.+|... |++ ++|+..|+++++++| .++.+
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~------------------------------~~A~~~~~~al~~~p~~~~~~~~ 260 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKIS------------------------------QQALSAYAQAEKVDRKASSNPDL 260 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHH------------------------------HHHHHHHHHHHHHCGGGGGCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchH------------------------------HHHHHHHHHHHHhCCCcccCHHH
Confidence 7 8999999999888 555 556666666677777 88889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 004336 682 YRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 682 ~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l-~a~~~~~~g~~~~A~~~~~~a 738 (760)
|+++|.+|...|++++|+..|++++...|++...+. .+.++...|++++|++.+.+.
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999997774 488888889999999877554
No 78
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=2.6e-18 Score=177.43 Aligned_cols=225 Identities=13% Similarity=0.083 Sum_probs=171.8
Q ss_pred HHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 004336 434 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES----DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 509 (760)
Q Consensus 434 ~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~ 509 (760)
...|++++|+..+ .+++.. +|.++.+++.+|.++...|++++|+..|+++++.+|.+.
T Consensus 16 ~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 77 (275)
T 1xnf_A 16 QPTLQQEVILARM------------------EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP 77 (275)
T ss_dssp CCCHHHHHHHHHH------------------HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred CccchHHHHHHHH------------------HHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH
Confidence 3457778888887 777776 345677888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHH
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 589 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~L 589 (760)
.++..+|.++...|++++|+..|+++++++|++ ..++..+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------------------------------------~~~~~~l 117 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----------------------------------------NYAHLNR 117 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------THHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc----------------------------------------cHHHHHH
Confidence 888888888888888888888888888888877 6777888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHH
Q 004336 590 GSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRAD 667 (760)
Q Consensus 590 g~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~ 667 (760)
|.+|...|++++|+..|+++++..|. .....+ .+....|++++ |+..
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~------------------------------A~~~ 166 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL-YLAEQKLDEKQ------------------------------AKEV 166 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHHHCHHH------------------------------HHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH-HHHHHhcCHHH------------------------------HHHH
Confidence 88888888888888888888887666 222222 23344455544 4455
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHH-HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 668 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL----HLLH-LRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 668 l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~----~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
+++++...|.+...+ .++.++...++.++|+..+++++...|.. ...+ ..+.++...|++++|+..|+++++.+
T Consensus 167 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 555555555555444 36778888899999999999999877753 3333 44999999999999999999999999
Q ss_pred CCcHHH
Q 004336 743 PNDQEM 748 (760)
Q Consensus 743 P~~~~~ 748 (760)
|++...
T Consensus 246 p~~~~~ 251 (275)
T 1xnf_A 246 VHNFVE 251 (275)
T ss_dssp CTTCHH
T ss_pred chhHHH
Confidence 976653
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.81 E-value=7e-19 Score=207.56 Aligned_cols=172 Identities=14% Similarity=0.088 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
.++.+.+++.+|.++..+|++++|+..|+++++++|++. .++..+|.++...|++++|+..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~------~a~~nLg~~l~~~g~~~eA~~~~------------ 66 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA------AAHSNLASVLQQQGKLQEALMHY------------ 66 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------
Confidence 456788899999999999999999999999999999995 89999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
+++++++|+++.+++++|.+|..+|++++|++.|+++++++|++..++.++|.+|..+|++++|+..|++++++
T Consensus 67 ------~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 67 ------KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 539 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 539 ~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
+|++ ..++.++|.+|...|++++|++.|++++++.+
T Consensus 141 ~P~~----------------------------------------~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 141 KPDF----------------------------------------PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp CSCC----------------------------------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CCCC----------------------------------------hHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 9999 78889999999999999999999999988544
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.80 E-value=5.8e-19 Score=208.29 Aligned_cols=172 Identities=20% Similarity=0.181 Sum_probs=157.6
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
..|+++.+++++|.+|.++|++++|++.|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------- 76 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------- 76 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 627 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~ 627 (760)
+.+++++|.+|..+|++++|+++|+++++++|. .+++++|.+|..
T Consensus 77 ---------------------------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 77 ---------------------------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123 (723)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 889999999999999999999999999998887 899999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 628 KNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 628 ~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
.|++++|+ ..|+++++++|+++.++.++|.++...|++++|++.++++++
T Consensus 124 ~g~~~eAi------------------------------~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 124 SGNIPEAI------------------------------ASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCHHHHH------------------------------HHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred cCCHHHHH------------------------------HHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99885554 455556667778888888999999999999999999999998
Q ss_pred cCCC
Q 004336 708 FKAD 711 (760)
Q Consensus 708 ~~p~ 711 (760)
+.|+
T Consensus 174 l~~~ 177 (723)
T 4gyw_A 174 IVAD 177 (723)
T ss_dssp HHHH
T ss_pred hChh
Confidence 7654
No 81
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.80 E-value=7.4e-19 Score=197.47 Aligned_cols=323 Identities=14% Similarity=0.052 Sum_probs=203.4
Q ss_pred HHHHHHhhhHHHhcCCH---HHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc-----CHHHHHHHHhhhccccc
Q 004336 383 LLAFHQLGCVRLLRKEY---DEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID-----NWTIADCWLQLYDRWSS 454 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~---~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g-----~~~~A~~~l~l~~~~~~ 454 (760)
+.+++.+|.++...|++ ++|+.+|++++.. ++ .+++.+|.++...+ ++++|+.++
T Consensus 35 ~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~------~A~~~Lg~~~~~~~~~~~~~~~~A~~~~-------- 97 (452)
T 3e4b_A 35 SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SP------RAQARLGRLLAAKPGATEAEHHEAESLL-------- 97 (452)
T ss_dssp CTGGGTCC-------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CH------HHHHHHHHHHHhCCCCCCcCHHHHHHHH--------
Confidence 45677778777777777 7888888877755 32 56777777555544 667777777
Q ss_pred cCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHH---
Q 004336 455 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-AASDHERLVYEGWILYDTSHCEEGLR--- 530 (760)
Q Consensus 455 ~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-~p~~~~a~~~Lg~i~~~~g~~eeAl~--- 530 (760)
++++.. +++.+++.+|.+|...+..+++...++..... .+.++.+++.+|.+|...+.++++..
T Consensus 98 ----------~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 98 ----------KKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp ----------HHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred ----------HHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 777764 34447778888887776554443333333222 13456778888888888875544444
Q ss_pred -HHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhh---HHHHHHhhhHhhccH----HHHHHHHHHHHHHc----CC
Q 004336 531 -KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS---LLEDALKCPSDRLRK----GQALNNLGSVYVDC----GQ 598 (760)
Q Consensus 531 -~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~---~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~----g~ 598 (760)
+++.+...+| .+++.+|.++... + ..++|+..++++... +..++++|.+|... ++
T Consensus 166 ~~~~~a~~~~~--~a~~~Lg~~~~~~-----------g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 166 RICKAALNTTD--ICYVELATVYQKK-----------QQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HHHHHHTTTCT--THHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCC
T ss_pred HHHHHHHcCCH--HHHHHHHHHHHHc-----------CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 4444444444 4788888888776 5 888888888877333 55668888888765 78
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhccCcHHHHHHHH---hcC-----CHHHHHHH
Q 004336 599 LDLAADCYSNALKIRHTRAHQGLARV-H--FLKNNKTTAYEEMTKLIKKARNNASAYEKRS---EYC-----DRELTRAD 667 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~~~~a~~~La~~-~--~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~---~~~-----~~~~A~~~ 667 (760)
+++|+.+|+++. .+.+.+++++|.+ + ...|++++|+.+|+++++... ..+...++ ..| +.++|+..
T Consensus 233 ~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 233 EKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ--PRAELLLGKLYYEGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 899999999988 6666888899988 4 467889999999998886653 22222221 124 88899999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-cC---CHHHHHHHHHHHH
Q 004336 668 LEMVTQLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAIAFKADLHLLHLRAAFHEH-TG---DVLGALRDCRAAL 739 (760)
Q Consensus 668 l~kal~l~p~~~~~~~~La~~~~~----~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~-~g---~~~~A~~~~~~aL 739 (760)
|+++. |.++.+++++|.+|.. ..++++|+.+|+++.+.........+ +.+|.. .| ++.+|..+|+++.
T Consensus 310 ~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L-g~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 310 FEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI-AQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH-HHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH-HHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 99888 8888899999988877 34889999999988875433323223 455544 23 7888999999888
Q ss_pred hcCCCcHHHHHHHHHhh
Q 004336 740 SVDPNDQEMLELHSRVY 756 (760)
Q Consensus 740 ~l~P~~~~~l~~~~r~~ 756 (760)
+.. ++++...+..+.
T Consensus 386 ~~g--~~~a~~~l~~l~ 400 (452)
T 3e4b_A 386 AQD--TPEANDLATQLE 400 (452)
T ss_dssp TTC--CHHHHHHHHHHH
T ss_pred HCC--CHHHHHHHHHHH
Confidence 765 345555555554
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=1.5e-17 Score=167.89 Aligned_cols=134 Identities=11% Similarity=0.102 Sum_probs=100.1
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCC-CCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSP-DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P-~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
..++..|..++..|++++|+..|++++..+| .+. .+++.+|.++...|++++|+.++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~---------------- 65 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS------VTAYNCGVCADNIKKYKEAADYF---------------- 65 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH------HHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc------HHHHHHHHHHHHhhcHHHHHHHH----------------
Confidence 4566667777777777777777777777777 553 66666777777777777777777
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-------ERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~-------~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
++++..+|++..+++.+|.+|...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|+++
T Consensus 66 --~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 66 --DIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp --HHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777776 55777777777777777777777777
Q ss_pred HhhcCC
Q 004336 536 IQMKRS 541 (760)
Q Consensus 536 l~l~p~ 541 (760)
++++|+
T Consensus 144 l~~~p~ 149 (228)
T 4i17_A 144 TDVTSK 149 (228)
T ss_dssp TTSSCH
T ss_pred HhcCCC
Confidence 777777
No 83
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1e-17 Score=177.96 Aligned_cols=216 Identities=11% Similarity=0.023 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHHh-hcCChHHHHHHHHHHHccc
Q 004336 492 EAAMRSLQLARQHAASDHERLVYEGWILYD-------TSHC-------EEGLRKAEESIQ-MKRSFEAFFLKAYALADSS 556 (760)
Q Consensus 492 ~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~-------~g~~-------eeAl~~~~~al~-l~p~~~a~~~la~~l~~~~ 556 (760)
++|+..|++++..+|.++++|+.+|..+.. .|++ ++|+..|+++++ ++|++
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~-------------- 98 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-------------- 98 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC--------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc--------------
Confidence 789999999999999999999999999874 5886 999999999999 79998
Q ss_pred CCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--H-HHHHHHHHHHHcCCHHH
Q 004336 557 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--R-AHQGLARVHFLKNNKTT 633 (760)
Q Consensus 557 ~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~-a~~~La~~~~~~g~~~~ 633 (760)
..+|..+|.++...|++++|...|+++++..|. . +|..+|.++...|++++
T Consensus 99 --------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 99 --------------------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred --------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHH
Confidence 788999999999999999999999999997765 4 89999999999999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHH-----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 634 AYEEMTKLIKKARNNASAYEKRS-----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 634 A~~~l~~al~~~~~~~~~~~~~~-----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
|...|+++++..|....++...+ ..|+.++|...|+++++.+|+++..|..+|..+...|++++|+..|++++..
T Consensus 153 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 153 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999887766655432 2489999999999999999999999999999999999999999999999995
Q ss_pred ---CCC-cHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 004336 709 ---KAD-LHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 709 ---~p~-~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
.|+ ...++.. +.+....|++++|...++++++..|++.+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 453 5666654 77778889999999999999999998553
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=3.8e-17 Score=178.70 Aligned_cols=232 Identities=11% Similarity=0.055 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHH
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQH---AAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 549 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~---~p~---~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la 549 (760)
.++.+|..+...|++++|+..|++++++ .++ .+.++..+|.++...|++++|+..+++++++.+.. ...
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---- 180 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN---- 180 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch----
Confidence 3445999999999999999999999987 233 56889999999999999999999999999875433 000
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGL 621 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~L 621 (760)
...+.++.++|.+|...|++++|+.+|+++++..+. .++.++
T Consensus 181 ------------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 181 ------------------------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 000344555555555555555555555555543111 345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----c-cCcHHHHHHHH----hcCCHHHHHHHHHHHHhh-----CCCChHHHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKK-----A-RNNASAYEKRS----EYCDRELTRADLEMVTQL-----DPLRVYPYRYRA 686 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~-----~-~~~~~~~~~~~----~~~~~~~A~~~l~kal~l-----~p~~~~~~~~La 686 (760)
|.+|...|++++|+..++++++. . |....++..++ ..|++++|+..+++++++ +|.....+..+|
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555555552 2 22222222221 235555555555555554 222233356789
Q ss_pred HHHHHcCC---HHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004336 687 AVLMDSHK---ENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDP 743 (760)
Q Consensus 687 ~~~~~~g~---~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P 743 (760)
.++...|+ +++|+..+++. ...|....++ ..+.+|...|++++|..+|++++++..
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999 78888888776 2222222333 448889999999999999999987644
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.78 E-value=1.1e-16 Score=173.93 Aligned_cols=304 Identities=14% Similarity=0.049 Sum_probs=213.5
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+..+...|.+++..|++++|+..+++++...|... ......++..+|.++...|++++|..++
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------- 76 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-FYSRIVATSVLGEVLHCKGELTRSLALM-------------- 76 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHHHHHhcCcHHHHHHHH--------------
Confidence 3456677788888899999999999999999988664 2233457888999999999999999999
Q ss_pred HHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHH
Q 004336 461 LSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--------ASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 461 l~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~--------p~~~~a~~~Lg~i~~~~g~~e 526 (760)
.+++...|.. ..++..+|.++...|++++|+..+++++... |....++.++|.++...|+++
T Consensus 77 ----~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 77 ----QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp ----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred ----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 7777655432 2447889999999999999999999999874 345567888999999999999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 527 EGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCY 606 (760)
Q Consensus 527 eAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~ 606 (760)
+|...+++++.+.+.. +.. ....++..+|.++...|++++|...+
T Consensus 153 ~A~~~~~~al~~~~~~------------------------~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~l 197 (373)
T 1hz4_A 153 EAEASARSGIEVLSSY------------------------QPQ-----------QQLQCLAMLIQCSLARGDLDNARSQL 197 (373)
T ss_dssp HHHHHHHHHHHHTTTS------------------------CGG-----------GGHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc------------------------CcH-----------HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999887764 000 00467888999999999999999999
Q ss_pred HHHHhhcch-----H--HH--HHHHHHHHHcCCHHHHHHHHHHHHHhccCc----HHHH----HHHHhcCCHHHHHHHHH
Q 004336 607 SNALKIRHT-----R--AH--QGLARVHFLKNNKTTAYEEMTKLIKKARNN----ASAY----EKRSEYCDRELTRADLE 669 (760)
Q Consensus 607 ~~Al~~~~~-----~--a~--~~La~~~~~~g~~~~A~~~l~~al~~~~~~----~~~~----~~~~~~~~~~~A~~~l~ 669 (760)
++++...+. . .. ..++.++...|++++|...+++++...+.. ...+ ......|++++|...++
T Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 277 (373)
T 1hz4_A 198 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 277 (373)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999875211 1 11 234566889999999999998887655421 1111 11223366666666666
Q ss_pred HHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004336 670 MVTQLDPLR------VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDP 743 (760)
Q Consensus 670 kal~l~p~~------~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P 743 (760)
+++...+.. ...+..+|.++...|++++|...+++++...+.... ...+...| +.....+++.+...|
T Consensus 278 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~----~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 278 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF----ISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCC----CHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccH----HHHHHHcc--HHHHHHHHHHHhCCC
Confidence 665553321 134555666666666666666666666654332110 11111112 455555666666666
Q ss_pred C
Q 004336 744 N 744 (760)
Q Consensus 744 ~ 744 (760)
-
T Consensus 352 ~ 352 (373)
T 1hz4_A 352 L 352 (373)
T ss_dssp S
T ss_pred C
Confidence 4
No 86
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.7e-18 Score=180.28 Aligned_cols=169 Identities=14% Similarity=0.119 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAA 494 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A 494 (760)
..++..+|.++...|++++|+.++ ++++.. .|....++..+|.++...|++++|
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~------------------~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 88 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLC------------------KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDA 88 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHH
Confidence 578999999999999999999999 777773 677788999999999999999999
Q ss_pred HHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHcccCCCCc
Q 004336 495 MRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-----RSFEAFFLKAYALADSSQDSSC 561 (760)
Q Consensus 495 i~~l~kal~~--------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~-----p~~~a~~~la~~l~~~~~~~~~ 561 (760)
+..|++++.. .|....++..+|.++...|++++|+..+++++++. ++.
T Consensus 89 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------------------- 149 (311)
T 3nf1_A 89 ANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH------------------- 149 (311)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC-------------------
T ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC-------------------
Confidence 9999999987 35667889999999999999999999999999763 111
Q ss_pred chhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------cch--HHHHHHHHHHHHcCCH
Q 004336 562 SSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--------RHT--RAHQGLARVHFLKNNK 631 (760)
Q Consensus 562 ~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~--------~~~--~a~~~La~~~~~~g~~ 631 (760)
.....++..+|.++...|++++|+.+|+++++. .+. .++..+|.++...|++
T Consensus 150 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 211 (311)
T 3nf1_A 150 ------------------PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF 211 (311)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred ------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 001678899999999999999999999999986 343 6899999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 004336 632 TTAYEEMTKLIKKAR 646 (760)
Q Consensus 632 ~~A~~~l~~al~~~~ 646 (760)
++|+..++++++..+
T Consensus 212 ~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 212 KQAETLYKEILTRAH 226 (311)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 87
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.77 E-value=3e-17 Score=179.53 Aligned_cols=240 Identities=13% Similarity=-0.026 Sum_probs=192.9
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
....++..|..++..|++++|+..|++++.+.+..++......++..+|.++...|++++|+.++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~--------------- 166 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA--------------- 166 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH---------------
Confidence 34566778999999999999999999999985443333344688999999999999999999999
Q ss_pred HHHHHHHHhCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHH
Q 004336 462 SVIYQMLESDA-------PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 462 ~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeA 528 (760)
.+++...+ ..+.++..+|.+|...|++++|+..|++++++.+.. ..++.++|.+|..+|++++|
T Consensus 167 ---~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 167 ---RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp ---HHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 78777643 345689999999999999999999999999875432 35899999999999999999
Q ss_pred HHHHHHHHhh-----c-CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHH
Q 004336 529 LRKAEESIQM-----K-RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLA 602 (760)
Q Consensus 529 l~~~~~al~l-----~-p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA 602 (760)
+..+++++++ + |.. +.++.++|.+|...|++++|
T Consensus 244 ~~~~~~al~~~~~~~~~~~~----------------------------------------~~~~~~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSL----------------------------------------PQAYFLITQIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGH----------------------------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhccchhH----------------------------------------HHHHHHHHHHHHHCCCHHHH
Confidence 9999999984 2 222 67899999999999999999
Q ss_pred HHHHHHHHhhc-----ch--HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 004336 603 ADCYSNALKIR-----HT--RAHQGLARVHFLKNN---KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVT 672 (760)
Q Consensus 603 ~~~~~~Al~~~-----~~--~a~~~La~~~~~~g~---~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal 672 (760)
+.+|+++++.. +. ..+..+|.++...|+ +.+|+..+++.
T Consensus 284 ~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~------------------------------- 332 (383)
T 3ulq_A 284 HEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK------------------------------- 332 (383)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-------------------------------
Confidence 99999999853 22 345678999999998 44444444322
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 673 QLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 673 ~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
...|....++..+|.+|...|++++|+.++++++....
T Consensus 333 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 333 MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 11222345677889999999999999999999997654
No 88
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=2.2e-17 Score=185.47 Aligned_cols=321 Identities=12% Similarity=-0.019 Sum_probs=243.7
Q ss_pred HHHHHHHhhhHHHhcC-----CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccC
Q 004336 382 RLLAFHQLGCVRLLRK-----EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 456 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g-----~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~ 456 (760)
.+.+++.+|.++...+ ++++|+.+|++++.. +++ .+++.+|.++...+..+++...+
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~------~A~~~Lg~~y~~~~~~~~~~~a~---------- 129 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEG------NTLIPLAMLYLQYPHSFPNVNAQ---------- 129 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCS------SCHHHHHHHHHHCGGGCTTCCHH----------
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCH------HHHHHHHHHHHhCCCCCCCHHHH----------
Confidence 6788999999777766 899999999999884 444 67899999998877655443322
Q ss_pred CcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHhCCCcHHHHHHHHHHHHHCC---CHHHHH
Q 004336 457 DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR----SLQLARQHAASDHERLVYEGWILYDTS---HCEEGL 529 (760)
Q Consensus 457 d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~----~l~kal~~~p~~~~a~~~Lg~i~~~~g---~~eeAl 529 (760)
..+.++.. +.++.+++.+|.+|...+.++++.. +++.+...+| .+++.||.+|...| ++++|+
T Consensus 130 -----~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 130 -----QQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp -----HHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----HHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHH
Confidence 11244433 4567899999999999995555544 4555544444 49999999999999 999999
Q ss_pred HHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--HHHHHHHHHH-H--HHcCCHHHHH
Q 004336 530 RKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--GQALNNLGSV-Y--VDCGQLDLAA 603 (760)
Q Consensus 530 ~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--~~a~~~Lg~~-y--~~~g~~~eA~ 603 (760)
.+|+++.+..|.. ..++.+|.++.... ...+..++|+..|+++. + +.+++++|.+ + ...+++++|+
T Consensus 200 ~~~~~aa~~g~~~a~~~~~Lg~~y~~g~-------~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 200 KQMEAGVSRGTVTAQRVDSVARVLGDAT-------LGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHTCGG-------GSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 9999999998888 77799999997642 22246778888888776 5 8899999998 4 5789999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhccCcHHHHHHHHh---c-----CCHHHHHHHHHH
Q 004336 604 DCYSNALKIRHTRAHQGLARVHFLKN-----NKTTAYEEMTKLIKKARNNASAYEKRSE---Y-----CDRELTRADLEM 670 (760)
Q Consensus 604 ~~~~~Al~~~~~~a~~~La~~~~~~g-----~~~~A~~~l~~al~~~~~~~~~~~~~~~---~-----~~~~~A~~~l~k 670 (760)
.+|+++.+.+...++++||.+|. .| ++++|+.+|+++. +.+..+...++. . .+.++|+..|++
T Consensus 272 ~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 272 KYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 99999999998899999999998 66 9999999999998 655555544432 1 389999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCC
Q 004336 671 VTQLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAIAFKADLHLLHLRAAFHE--HTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 671 al~l~p~~~~~~~~La~~~~~----~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~--~~g~~~~A~~~~~~aL~l~P~ 744 (760)
+.+ +.++.+.+++|.+|.. ..++.+|..+|+++.+..+......+ ..+.. ..++..+|....++.....+.
T Consensus 348 Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l-~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 348 AAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLA-TQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 987 4568889999999985 46899999999999986654433333 33322 225677888888877765544
Q ss_pred c
Q 004336 745 D 745 (760)
Q Consensus 745 ~ 745 (760)
.
T Consensus 425 ~ 425 (452)
T 3e4b_A 425 L 425 (452)
T ss_dssp C
T ss_pred c
Confidence 3
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.74 E-value=2.8e-17 Score=194.07 Aligned_cols=169 Identities=16% Similarity=0.059 Sum_probs=150.0
Q ss_pred hhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH--------HhCCCcHHHHHHHH
Q 004336 411 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML--------ESDAPKGVLYFRQS 482 (760)
Q Consensus 411 ~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al--------~~~p~~~~~~~~la 482 (760)
..+|+++ .+++..+ ...|++++|+..+ ++++ ..+|++..+++.+|
T Consensus 388 ~~~p~~~------~a~~~~a---~~~~~~~~A~~~~------------------~~al~~~~~~~~~~~p~~~~~~~~~a 440 (681)
T 2pzi_A 388 LVDPTDV------AASVLQA---TVLSQPVQTLDSL------------------RAARHGALDADGVDFSESVELPLMEV 440 (681)
T ss_dssp CCCTTST------THHHHHH---TTTCCHHHHHHHH------------------HHHHTC-------CCTTCSHHHHHHH
T ss_pred cCCCCCc------chHHhhc---ccccCHHHHHHHH------------------HHhhhhcccccccccccchhHHHHHH
Confidence 4577775 5666555 7789999999999 8898 88999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcc
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCS 562 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~ 562 (760)
.++...|++++|+..|+++++.+|++..+++++|.++...|++++|+..|+++++++|++
T Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------------------- 500 (681)
T 2pzi_A 441 RALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-------------------- 500 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--------------------
T ss_pred HHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 563 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTK 640 (760)
Q Consensus 563 ~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~ 640 (760)
..+++++|.++...|++++ +..|+++++.+|. .+++++|.++...|++++|+..|++
T Consensus 501 --------------------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 501 --------------------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp --------------------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred --------------------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888999999999999999 9999999998776 8999999999999999666666655
Q ss_pred HHHhccC
Q 004336 641 LIKKARN 647 (760)
Q Consensus 641 al~~~~~ 647 (760)
+++.+|.
T Consensus 560 al~l~P~ 566 (681)
T 2pzi_A 560 VPPTSRH 566 (681)
T ss_dssp SCTTSTT
T ss_pred hcccCcc
Confidence 5444443
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.74 E-value=1.3e-16 Score=164.58 Aligned_cols=192 Identities=9% Similarity=-0.046 Sum_probs=157.4
Q ss_pred hhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc---HHHHHHHHHHHHH
Q 004336 411 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK---GVLYFRQSLLLLR 487 (760)
Q Consensus 411 ~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~---~~~~~~la~~~~~ 487 (760)
..+|.++ ..++.+|..+...|++++|+..+ ++++..+|++ ..+++.+|.++..
T Consensus 9 ~~~~~~~------~~~~~~a~~~~~~g~~~~A~~~~------------------~~~l~~~p~~~~~~~a~~~lg~~~~~ 64 (261)
T 3qky_A 9 RLRHSSP------QEAFERAMEFYNQGKYDRAIEYF------------------KAVFTYGRTHEWAADAQFYLARAYYQ 64 (261)
T ss_dssp --CCSSH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHGGGCSCSTTHHHHHHHHHHHHHH
T ss_pred CCCCCCH------HHHHHHHHHHHHhCCHHHHHHHH------------------HHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 4566774 89999999999999999999999 9999999998 9999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcc
Q 004336 488 LNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYD--------TSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 555 (760)
Q Consensus 488 ~g~~~~Ai~~l~kal~~~p~---~~~a~~~Lg~i~~~--------~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~ 555 (760)
.|++++|+..|+++++..|+ .+.+++.+|.++.. .|++++|+..|+++++..|++ .+...+..+....
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 99999999999999999874 46789999999999 999999999999999999987 3322222111111
Q ss_pred cCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHc--
Q 004336 556 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLK-- 628 (760)
Q Consensus 556 ~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~-- 628 (760)
. .....++.+|.+|...|++++|+..|+++++..|. .+++.+|.+|...
T Consensus 145 -----------~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 200 (261)
T 3qky_A 145 -----------A-------------KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE 200 (261)
T ss_dssp -----------H-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred -----------H-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence 0 01566889999999999999999999999997654 6899999999987
Q ss_pred --------CCHHHHHHHHHHHHHhccCcHH
Q 004336 629 --------NNKTTAYEEMTKLIKKARNNAS 650 (760)
Q Consensus 629 --------g~~~~A~~~l~~al~~~~~~~~ 650 (760)
|++++|+..|+++++..|+...
T Consensus 201 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 201 QSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred cchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 6666666666666666665443
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.74 E-value=8.1e-17 Score=166.23 Aligned_cols=195 Identities=11% Similarity=0.026 Sum_probs=165.1
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+..++..|..++..|+|++|+..|++++..+|+++ ....+++.+|.++...|++++|+..+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~--------------- 75 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE---WAADAQFYLARAYYQNKEYLLAASEY--------------- 75 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST---THHHHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc---chHHHHHHHHHHHHHhCcHHHHHHHH---------------
Confidence 355678888888888899999999999999999983 11288999999999999999999999
Q ss_pred HHHHHHHHhCCC---cHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCcHHHH-----------------H
Q 004336 462 SVIYQMLESDAP---KGVLYFRQSLLLLR--------LNCPEAAMRSLQLARQHAASDHERL-----------------V 513 (760)
Q Consensus 462 ~~~~~al~~~p~---~~~~~~~la~~~~~--------~g~~~~Ai~~l~kal~~~p~~~~a~-----------------~ 513 (760)
++++...|+ ...+++.+|.++.. .|++++|+..|+++++..|++..+. +
T Consensus 76 ---~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~ 152 (261)
T 3qky_A 76 ---ERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQY 152 (261)
T ss_dssp ---HHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999874 47789999999999 9999999999999999999886555 8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHH
Q 004336 514 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVY 593 (760)
Q Consensus 514 ~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y 593 (760)
.+|.+|...|++++|+..|+++++..|+.. ....++..+|.+|
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------------------------------------~~~~a~~~l~~~~ 195 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTP-------------------------------------WADDALVGAMRAY 195 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTST-------------------------------------THHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCc-------------------------------------hHHHHHHHHHHHH
Confidence 899999999999999999999999999850 0045666677777
Q ss_pred HHc----------CCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcCCHHHH
Q 004336 594 VDC----------GQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTA 634 (760)
Q Consensus 594 ~~~----------g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g~~~~A 634 (760)
... |++++|+..|+++++..|. .+...++.++...++++++
T Consensus 196 ~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 196 IAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 655 8999999999999997665 5666777777777766443
No 92
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.73 E-value=4.3e-16 Score=170.21 Aligned_cols=241 Identities=14% Similarity=-0.012 Sum_probs=191.8
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
......++..|..++..|++++|+..|++++.+.+...+......++..+|.++...|+++.|+.++
T Consensus 98 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~------------- 164 (378)
T 3q15_A 98 LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI------------- 164 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH-------------
Confidence 4445577889999999999999999999999886554444455688999999999999999999999
Q ss_pred cHHHHHHHHHhCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHH
Q 004336 460 SLSVIYQMLESDA-------PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 460 sl~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p------~~~~a~~~Lg~i~~~~g~~e 526 (760)
.+++...+ ..+.++.++|.+|...|++++|++.|++++++.+ ....++.++|.++..+|+++
T Consensus 165 -----~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 165 -----LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp -----HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -----HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 77776543 2356788999999999999999999999998643 23467899999999999999
Q ss_pred HHHHHHHHHHhh-----cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHH
Q 004336 527 EGLRKAEESIQM-----KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDL 601 (760)
Q Consensus 527 eAl~~~~~al~l-----~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~e 601 (760)
+|+..+++++.+ +|.. ..++.++|.++...|++++
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~----------------------------------------~~~~~~la~~~~~~g~~~~ 279 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLL----------------------------------------PKVLFGLSWTLCKAGQTQK 279 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGH----------------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhhCChhH----------------------------------------HHHHHHHHHHHHHCCCHHH
Confidence 999999999973 3333 6788999999999999999
Q ss_pred HHHHHHHHHhhcc-----h--HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004336 602 AADCYSNALKIRH-----T--RAHQGLARVHFLKNN---KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMV 671 (760)
Q Consensus 602 A~~~~~~Al~~~~-----~--~a~~~La~~~~~~g~---~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~ka 671 (760)
|+.++++++++.+ . ..+..++.++...|+ +.+|+..+++.
T Consensus 280 A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~------------------------------ 329 (378)
T 3q15_A 280 AFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK------------------------------ 329 (378)
T ss_dssp HHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC------------------------------
Confidence 9999999998532 2 455667777777777 54454444431
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 672 TQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 672 l~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
...|.....+..+|.+|...|++++|+.+|+++++..
T Consensus 330 -~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 330 -NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1111223456788999999999999999999998754
No 93
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=173.30 Aligned_cols=232 Identities=13% Similarity=0.036 Sum_probs=183.7
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhh--------CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhcc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTL--------SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 451 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l--------~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~ 451 (760)
...+.++..+|.++...|++++|+..|++++.+ .|.. ..++..+|.++...|++++|+.++
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~----- 92 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDV------ATMLNILALVYRDQNKYKDAANLL----- 92 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHH------HHHHHHHHHHHHHTTCHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHCCCHHHHHHHH-----
Confidence 345667888888999999999999999999986 3333 478999999999999999999999
Q ss_pred ccccCCcCcHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHH
Q 004336 452 WSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--------ASDHERLVYE 515 (760)
Q Consensus 452 ~~~~~d~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~--------p~~~~a~~~L 515 (760)
.+++.. .|....+++.+|.++...|++++|+..|+++++.. |....++..+
T Consensus 93 -------------~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 93 -------------NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp -------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 666665 46678899999999999999999999999999874 5567789999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhh--------cCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----
Q 004336 516 GWILYDTSHCEEGLRKAEESIQM--------KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---- 582 (760)
Q Consensus 516 g~i~~~~g~~eeAl~~~~~al~l--------~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~---- 582 (760)
|.++...|++++|+..+++++.. .|.. .++..+|.++... +++++|+..+.+.+..
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ-----------GKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998 5555 7899999999998 8888888887777432
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004336 583 ---------------GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 645 (760)
Q Consensus 583 ---------------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~ 645 (760)
...+..++..+...+.+.+|...++++....+. .++..+|.+|...|++++|+..+++++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 334445556666777888888889888876655 889999999999999999999999999887
Q ss_pred c
Q 004336 646 R 646 (760)
Q Consensus 646 ~ 646 (760)
|
T Consensus 309 ~ 309 (311)
T 3nf1_A 309 K 309 (311)
T ss_dssp C
T ss_pred h
Confidence 6
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.73 E-value=3.8e-17 Score=163.28 Aligned_cols=182 Identities=11% Similarity=-0.045 Sum_probs=104.2
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++..|..++..|++++|+..|++++..+|+++ .+++..+. ...
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~~-----~~~----------------------- 49 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT------EMYYWTNV-----DKN----------------------- 49 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH------HHHHHHHS-----CTT-----------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------HHHHHhhh-----cch-----------------------
Confidence 34556677777888899999999999999999985 66655210 000
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
....+...+.+|.+|...|++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++|++
T Consensus 50 --------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 50 --------SEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp --------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred --------hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 000122344566666666666666666666666666666666666666666666666666666666666666
Q ss_pred -HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 543 -EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 543 -~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
.+++.+|.++...+ ....+.+...+.....+ ..+++.+|..+...|++++|+.+|++++++.|.
T Consensus 122 ~~a~~~lg~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 122 LAANIFLGNYYYLTA---------EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 33333333332220 00111112222111111 234455555566666666666666666665554
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.73 E-value=1.1e-16 Score=168.69 Aligned_cols=215 Identities=13% Similarity=0.038 Sum_probs=162.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcc
Q 004336 482 SLLLLRLNCPEAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 555 (760)
Q Consensus 482 a~~~~~~g~~~~Ai~~l~kal~~~p~------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~ 555 (760)
|.+|...|++++|+..|++++.+.+. .+.++.++|.+|..+|++++|+..|++++.+.|..
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------------- 110 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR------------- 110 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------------
Confidence 67888999999999999999987432 25789999999999999999999999999876543
Q ss_pred cCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcch--------HHHHHHHHHHH
Q 004336 556 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALKIRHT--------RAHQGLARVHF 626 (760)
Q Consensus 556 ~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~-g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~ 626 (760)
+....+ +.++.++|.+|... |++++|+.+|++++++.+. .++.++|.++.
T Consensus 111 -----------g~~~~~----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 111 -----------GQFRRG----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp -----------TCHHHH----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------CCHHHH----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 111111 56889999999996 9999999999999996542 56889999999
Q ss_pred HcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 627 LKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706 (760)
Q Consensus 627 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal 706 (760)
..|++++|+..|+++++..|....... .....+.++|.++..+|++++|+..|++++
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQW-----------------------SLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGG-----------------------GHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccH-----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998888888877777664321100 001257788999999999999999999999
Q ss_pred HcCCCcHHHH----H--HHHHHH--HcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 004336 707 AFKADLHLLH----L--RAAFHE--HTGDVLGALRDCRAALSVDPNDQEMLELHS 753 (760)
Q Consensus 707 ~~~p~~~~~~----l--~a~~~~--~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~ 753 (760)
.+.|+..... + ....+. ..+++++|+..|++++.++|.+..++.-..
T Consensus 227 ~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 227 SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 9999876432 1 133333 347799999999999999998876654433
No 96
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.72 E-value=4.4e-16 Score=149.69 Aligned_cols=169 Identities=11% Similarity=0.077 Sum_probs=136.7
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+..++.+|..+...|++++|+..|++++..+|++. .++..+|.++...|++++|..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~--------------- 65 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV------DVALHLGIAYVKTGAVDRGTELL--------------- 65 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH------HHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh------HHHHHHHHHHHHcCCHHHHHHHH---------------
Confidence 455667777777777888888888888888888774 77788888888888888888888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|+
T Consensus 66 ---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 66 ---ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp ---HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---HHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888777
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
+ ..++..+|.++...|++++|..+|+++++..|
T Consensus 143 ~----------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 143 E----------------------------------------GKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp C----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred c----------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7 66777788888888888888888888877544
No 97
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.72 E-value=1.1e-15 Score=166.98 Aligned_cols=232 Identities=13% Similarity=0.051 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p------~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
.++.+|..+...|++++|+..|++++++.+ ..+.+++.+|.++...|++++|+..+++++++.+..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-------- 174 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-------- 174 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC--------
Confidence 577899999999999999999999998732 346789999999999999999999999999875543
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-----h---HHHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-----T---RAHQGLA 622 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~-----~---~a~~~La 622 (760)
+... ...+.+++++|.+|...|++++|+.+|++++++.+ . .++.++|
T Consensus 175 ----------------~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 229 (378)
T 3q15_A 175 ----------------PLYS---------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA 229 (378)
T ss_dssp ----------------TTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------CCch---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0000 00156677777777777777777777777777421 1 5677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHH-----hccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhC-----CCChHHHHHHHHH
Q 004336 623 RVHFLKNNKTTAYEEMTKLIK-----KARNNASAYEKRS----EYCDRELTRADLEMVTQLD-----PLRVYPYRYRAAV 688 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~l~~al~-----~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~-----p~~~~~~~~La~~ 688 (760)
.+|...|++++|+..++++++ ..|....++..++ ..|++++|+..+++++++. |.....+..++.+
T Consensus 230 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777 4444333333332 3477778888888877763 3334456778888
Q ss_pred HHHcCC---HHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 689 LMDSHK---ENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 689 ~~~~g~---~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
+...|+ +.+|+..+++. ...|+...+. ..|.+|...|++++|..+|+++++..
T Consensus 310 y~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888888 88888888762 1222222333 44999999999999999999998754
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.72 E-value=1.6e-16 Score=158.65 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
+..+...|..+...|++++|+..+ .+++..+|+++.+++..+. ...
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~~~~-----~~~----------- 49 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYF------------------RQTIALNIDRTEMYYWTNV-----DKN----------- 49 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCHHHHHHHHHHHS-----CTT-----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCChHHHHHhhh-----cch-----------
Confidence 467788999999999999999999 9999999999988877542 111
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
....+.....+|.++...|++++|+..|+++++++|++
T Consensus 50 --~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------------------- 87 (208)
T 3urz_A 50 --SEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN---------------------------------------- 87 (208)
T ss_dssp --SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------
T ss_pred --hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----------------------------------------
Confidence 01123456679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhccCcHHHH---HHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNN--KTTAYEEMTKLIKKARNNASAY---EKR 655 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~--~~~A~~~l~~al~~~~~~~~~~---~~~ 655 (760)
..++.++|.++...|++++|+.+|+++++++|. .+++++|.+|+..|+ ...+...+++++...|.....+ ...
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 677777888888888888888888888887666 777888888776654 3445566666554333211111 111
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCC
Q 004336 656 SEYCDRELTRADLEMVTQLDPLR 678 (760)
Q Consensus 656 ~~~~~~~~A~~~l~kal~l~p~~ 678 (760)
...|++++|+..|+++++++|+.
T Consensus 168 ~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 168 LFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHccCHHHHHHHHHHHHHhCCCH
Confidence 23467788888888888888863
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.71 E-value=1.1e-16 Score=189.18 Aligned_cols=184 Identities=15% Similarity=0.018 Sum_probs=152.5
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR--------QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal--------~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
..+|+++.+++..| ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35688888888777 78999999999999999 89999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHH
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAH 618 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~ 618 (760)
++ ..+++++|.+|...|++++|+..|+++++.+|. .++
T Consensus 465 ~~----------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 504 (681)
T 2pzi_A 465 WR----------------------------------------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPK 504 (681)
T ss_dssp CC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred ch----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99 889999999999999999999999999998877 899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Q 004336 619 QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEA 698 (760)
Q Consensus 619 ~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eA 698 (760)
+++|.++...|++++ +..|+ ++++++|++..+++++|.++...|++++|
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~------------------------------~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQ------------------------------TVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHH------------------------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCChHH-HHHHH------------------------------HHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999865 55555 45555566666677777777777777777
Q ss_pred HHHHHHHHHcCCCcHHHHHH-HHHHHHcC
Q 004336 699 IAELSRAIAFKADLHLLHLR-AAFHEHTG 726 (760)
Q Consensus 699 i~~l~kal~~~p~~~~~~l~-a~~~~~~g 726 (760)
+..|+++++.+|++..+++. +.++...|
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 77777777777777666643 55554433
No 100
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=9.6e-14 Score=167.04 Aligned_cols=287 Identities=15% Similarity=0.070 Sum_probs=203.5
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 468 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al 468 (760)
.|.++...|.|++|..+|+++- .+ ...+..++...+++++|.+++ ++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~---------~~A~~VLie~i~nldrAiE~A------------------er-- 1101 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VN---------TSAVQVLIEHIGNLDRAYEFA------------------ER-- 1101 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CH---------HHHHHHHHHHHhhHHHHHHHH------------------Hh--
Confidence 4888888889999999999862 11 111334455778888888877 43
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHH
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 548 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~l 548 (760)
.+.+.+|+.+|.++...|++++|+..|.++ +++..+..+|.++...|++++|+++|..+.+..++..+...+
T Consensus 1102 ---vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~L 1173 (1630)
T 1xi4_A 1102 ---CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETEL 1173 (1630)
T ss_pred ---cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHH
Confidence 366899999999999999999999999875 788999999999999999999999999999887665333357
Q ss_pred HHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 004336 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLK 628 (760)
Q Consensus 549 a~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~ 628 (760)
|.+|+.. +++++ ++.|..... ...+..+|..+...|+|++|..+|.++ ..|..+|.++.+.
T Consensus 1174 afaYAKl-----------~rlee-le~fI~~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1174 IFALAKT-----------NRLAE-LEEFINGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHL 1234 (1630)
T ss_pred HHHHHhh-----------cCHHH-HHHHHhCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHh
Confidence 7777776 44443 333322222 234456777777777777777777765 3566677777777
Q ss_pred CCHHHHHHHHHHHHHhcc-------------------------CcHHHHHH----HHhcCCHHHHHHHHHHHHhhCCCCh
Q 004336 629 NNKTTAYEEMTKLIKKAR-------------------------NNASAYEK----RSEYCDRELTRADLEMVTQLDPLRV 679 (760)
Q Consensus 629 g~~~~A~~~l~~al~~~~-------------------------~~~~~~~~----~~~~~~~~~A~~~l~kal~l~p~~~ 679 (760)
|++++|++.++++..... .++..+.. ....|.+++|+..+++++.++|.+.
T Consensus 1235 ge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1235 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence 777777777766533221 01111111 2234889999999999999998888
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCC-----CcHHHHHH-HHHHHHcCCHHHHHHHH
Q 004336 680 YPYRYRAAVLMD--SHKENEAIAELSRAIAFKA-----DLHLLHLR-AAFHEHTGDVLGALRDC 735 (760)
Q Consensus 680 ~~~~~La~~~~~--~g~~~eAi~~l~kal~~~p-----~~~~~~l~-a~~~~~~g~~~~A~~~~ 735 (760)
..+..+|.+|.+ -++..++++.|...+.+.| +...+|.. ..+|.+-|+++.|+...
T Consensus 1315 gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1315 GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 888888877765 4577888888888877766 44455544 66677779999998433
No 101
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.71 E-value=1.3e-16 Score=168.12 Aligned_cols=212 Identities=11% Similarity=-0.038 Sum_probs=164.9
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+...|.++...|+|++|+..|++++.+.+...+......++..+|.++...|++++|+.++ +
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~------------------~ 101 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL------------------E 101 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH------------------H
Confidence 3444777778889999999999999987654333444578999999999999999999999 8
Q ss_pred HHHHhCCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHH
Q 004336 466 QMLESDAPK------GVLYFRQSLLLLRL-NCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKA 532 (760)
Q Consensus 466 ~al~~~p~~------~~~~~~la~~~~~~-g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~ 532 (760)
+++...|.. +.++.++|.+|... |++++|+.+|++++++.|.. ..++.++|.++..+|++++|+..|
T Consensus 102 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 181 (292)
T 1qqe_A 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 888876543 56899999999996 99999999999999987754 567899999999999999999999
Q ss_pred HHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 533 EESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 533 ~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
++++.+.|++ ...+ ....++.++|.++...|++++|+.+|+++++
T Consensus 182 ~~al~~~~~~~~~~~----------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 182 SKLIKSSMGNRLSQW----------------------------------SLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHTTSSCTTTGG----------------------------------GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHhcCCcccH----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999998876 1000 0035788999999999999999999999999
Q ss_pred hcch-------HHHHHHHHHHH--HcCCHHHHHHHHHHHHHhccCcH
Q 004336 612 IRHT-------RAHQGLARVHF--LKNNKTTAYEEMTKLIKKARNNA 649 (760)
Q Consensus 612 ~~~~-------~a~~~La~~~~--~~g~~~~A~~~l~~al~~~~~~~ 649 (760)
++|. ..+..++..+. ..+++++|+..|++++..+|...
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 8775 13344555443 23456666666665555555433
No 102
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.69 E-value=2e-16 Score=163.06 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=120.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc----
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK---- 539 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~---- 539 (760)
|..+.++..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++.+.
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 677889999999999999999999999999987 36667889999999999999999999999999762
Q ss_pred -CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Q 004336 540 -RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI------ 612 (760)
Q Consensus 540 -p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~------ 612 (760)
++. .....++.++|.+|...|++++|+.+|+++++.
T Consensus 120 ~~~~-------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 120 GKFH-------------------------------------PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp CTTC-------------------------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCC-------------------------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 111 001678999999999999999999999999987
Q ss_pred --cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 613 --RHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 613 --~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
.+. .++..+|.++...|++++|+..++++++..+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 443 7899999999999999999999999998754
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=6.6e-17 Score=152.82 Aligned_cols=144 Identities=8% Similarity=0.045 Sum_probs=128.3
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
.+|.++..+|++++|+..+++++..+|+++ .+++.+|.+|...|++++|+.++ +++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~------~~~~~la~~y~~~~~~~~A~~~~------------------~~a 57 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKS------IKGFYFAKLYYEAKEYDLAKKYI------------------CTY 57 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHH------TTHHHHHHHHHHTTCHHHHHHHH------------------HHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHH
Confidence 368888889999999999999999999885 78889999999999999999999 999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH-HHHHHhhcCCh-HHH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK-AEESIQMKRSF-EAF 545 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~-~~~al~l~p~~-~a~ 545 (760)
+..+|+++.+|+.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|++ .++
T Consensus 58 l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 58 INVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887765 59999999999 666
Q ss_pred HHHHHHHHcc
Q 004336 546 FLKAYALADS 555 (760)
Q Consensus 546 ~~la~~l~~~ 555 (760)
..++.++...
T Consensus 138 ~l~~~ll~~~ 147 (150)
T 4ga2_A 138 KLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 6666665544
No 104
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.69 E-value=2.1e-15 Score=144.93 Aligned_cols=168 Identities=13% Similarity=0.080 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
...+..+|..+...|++++|+.++ .+++..+|.+..+++.+|.++...|++++|+..+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLL------------------EQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHH------------------TTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHH------------------HHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467888999999999999999999 88888899999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
+..|.+..++..+|.++...|++++|+..+++++...|++
T Consensus 70 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------------- 109 (186)
T 3as5_A 70 ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN---------------------------------------- 109 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------------------------------------
T ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----------------------------------------
Confidence 9999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN 648 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~ 648 (760)
..++..+|.++...|++++|+.+|+++++..|. .++..+|.++...|++++|...++++++..|+.
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 778899999999999999999999999997765 889999999999999999999999999887744
No 105
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=1.4e-13 Score=165.62 Aligned_cols=315 Identities=12% Similarity=0.030 Sum_probs=234.3
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+....|+++|..+...|++++|+..|.++ +++ .++..+|..+.+.|++++|+.++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~------say~eVa~~~~~lGkyEEAIeyL-------------- 1157 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP------SSYMEVVQAANTSGNWEELVKYL-------------- 1157 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CCh------HHHHHHHHHHHHcCCHHHHHHHH--------------
Confidence 34567888888888888888888888775 453 77778888888888888888888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
..+....++ +.+...+|.+|.+++++++ ++.|. ...+...+..+|..+...|++++|+..|.++
T Consensus 1158 ----~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1158 ----QMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred ----HHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 666665533 2223348888888888774 44442 2334456667888888888888888888886
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHH
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQG 620 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~ 620 (760)
..|..++.++... +.+++|++.+.++.. ..+|...+.++.+.|+|..|..+... +. .+++.+..
T Consensus 1222 --~ny~rLA~tLvkL-----------ge~q~AIEaarKA~n-~~aWkev~~acve~~Ef~LA~~cgl~-Ii-v~~deLee 1285 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHL-----------GEYQAAVDGARKANS-TRTWKEVCFACVDGKEFRLAQMCGLH-IV-VHADELEE 1285 (1630)
T ss_pred --hHHHHHHHHHHHh-----------CCHHHHHHHHHHhCC-HHHHHHHHHHHhhhhHHHHHHHHHHh-hh-cCHHHHHH
Confidence 3577888888887 788888888888744 57888888888888888888888774 32 33345568
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hc--CCHHHHHHHHHHHHhhCC-----CChHHHHHHHHHH
Q 004336 621 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EY--CDRELTRADLEMVTQLDP-----LRVYPYRYRAAVL 689 (760)
Q Consensus 621 La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~--~~~~~A~~~l~kal~l~p-----~~~~~~~~La~~~ 689 (760)
++..|...|.+++|+.++++++..++....++..++ .| ++..++.+.|...+.+.| .+...|..+..+|
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999987776665443 22 466788888988888877 7788899999999
Q ss_pred HHcCCHHHHHHHHHHHHHc------------CCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 690 MDSHKENEAIAELSRAIAF------------KADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 690 ~~~g~~~eAi~~l~kal~~------------~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
.+-|+++.|+...-..... .+.++.++.+ ..+|. +....++..+..++.-.-++..+..++.+
T Consensus 1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 9999999999544433222 5666777766 44444 56677777777777555556666555553
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.68 E-value=7.4e-15 Score=155.12 Aligned_cols=227 Identities=6% Similarity=-0.084 Sum_probs=180.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHC---CCHHHHHHHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLN--CPEAAMRSLQLARQHAASDHERLVYEGWIL----YDT---SHCEEGLRKAEES 535 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g--~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~----~~~---g~~eeAl~~~~~a 535 (760)
.+++..+|++..+|+..+.++...| ++++++..+.+++..+|++..+|...++++ ... +++++++..++++
T Consensus 57 ~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~ 136 (306)
T 3dra_A 57 ELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAM 136 (306)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 6777777777777777777777777 888888888888888888888888888888 666 7889999999999
Q ss_pred HhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhc
Q 004336 536 IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD--LAADCYSNALKIR 613 (760)
Q Consensus 536 l~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~--eA~~~~~~Al~~~ 613 (760)
++.+|.+ ..+|+..+.++...|.++ +++++++++++.+
T Consensus 137 l~~~pkn----------------------------------------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 137 LSSDPKN----------------------------------------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp HHHCTTC----------------------------------------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHhCCCC----------------------------------------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 9999988 677888888888888887 8999999999877
Q ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 614 HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 614 ~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
+. .+|...+.+....|+.. .. ..++++++.+.+++..+|.+..+|++++.++..
T Consensus 177 ~~N~sAW~~R~~ll~~l~~~~---------------~~---------~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 177 LKNNSAWSHRFFLLFSKKHLA---------------TD---------NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp TTCHHHHHHHHHHHHSSGGGC---------------CH---------HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccccc---------------hh---------hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 76 78888888877766410 00 013677888888899999999999999999999
Q ss_pred cCCHHH-HHHHHHHHHHcC---CCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHh
Q 004336 692 SHKENE-AIAELSRAIAFK---ADLHLLH-LRAAFHEHTGDVLGALRDCRAALS-VDPNDQEMLELHSRV 755 (760)
Q Consensus 692 ~g~~~e-Ai~~l~kal~~~---p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~-l~P~~~~~l~~~~r~ 755 (760)
.|+..+ ......+++... |.+..+. +.+.++...|+.++|++.|+.+.+ .||-....+....+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 233 FDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp TTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred cCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 998555 445666666655 5555444 668888888999999999999996 899999888876543
No 107
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.68 E-value=8.3e-15 Score=159.13 Aligned_cols=297 Identities=12% Similarity=-0.017 Sum_probs=201.1
Q ss_pred CChhHHHHHHHHHHHHHh--HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC
Q 004336 361 RSDKTVCFLERLLESAET--DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN 438 (760)
Q Consensus 361 ~~~~~~~lle~l~~~a~~--~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~ 438 (760)
..+.+...+++....... ....+.++..+|.++...|++++|+..+++++...|..........++..+|.++...|+
T Consensus 29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 344455555554443221 234667788999999999999999999999999887766555556678899999999999
Q ss_pred HHHHHHHHhhhccccccCCcCcHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q 004336 439 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--------APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--- 507 (760)
Q Consensus 439 ~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~--- 507 (760)
+++|..++ ++++... |....++..+|.++...|++++|+..+++++...+.
T Consensus 109 ~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 109 LQTAWETQ------------------EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHH------------------HHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHH------------------HHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 99999999 6666653 345677888999999999999999999999998765
Q ss_pred --cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh---HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 508 --DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF---EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 508 --~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~---~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
...++..+|.++...|++++|...+++++.+.+.. ..+.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~------------------------------------ 214 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI------------------------------------ 214 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH------------------------------------
Confidence 34678899999999999999999999999774332 0000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH------H
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA------S 650 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~------~ 650 (760)
......++.++...|++++|...+++++...+. ..+..+|.++...|++++|...+++++...+..+ .
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 111122344455666666666666666654321 2445666666666666666666666665543211 1
Q ss_pred HHHH----HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 004336 651 AYEK----RSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR 718 (760)
Q Consensus 651 ~~~~----~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~ 718 (760)
++.. ....|+.++|...+++++.+.+... ....+...| +.....+++.+...|-+.....+
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-----~~~~~~~~g--~~~~~ll~~~~~~~~~~~~~~~~ 359 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG-----FISHFVIEG--EAMAQQLRQLIQLNTLPELEQHR 359 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-----CCHHHHTTH--HHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-----HHHHHHHcc--HHHHHHHHHHHhCCCCchHHHHH
Confidence 1111 1233666666666666665543211 122344455 67778888888888865544444
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.67 E-value=8.5e-15 Score=154.66 Aligned_cols=226 Identities=11% Similarity=0.042 Sum_probs=194.7
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc--CHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID--NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 475 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g--~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~ 475 (760)
..++|+..++++|.++|++. .+++..+.+....| .+++++.++ .+++..+|++.
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~------taWn~R~~~L~~l~~~~~~eeL~~~------------------~~~L~~nPk~y 103 (306)
T 3dra_A 48 YSERALHITELGINELASHY------TIWIYRFNILKNLPNRNLYDELDWC------------------EEIALDNEKNY 103 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHTCTTSCHHHHHHHH------------------HHHHHHCTTCC
T ss_pred CCHHHHHHHHHHHHHCcHHH------HHHHHHHHHHHHcccccHHHHHHHH------------------HHHHHHCcccH
Confidence 44799999999999999995 99999999999999 999999999 99999999999
Q ss_pred HHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhhcCChHHHH
Q 004336 476 VLYFRQSLLL----LRL---NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE--EGLRKAEESIQMKRSFEAFF 546 (760)
Q Consensus 476 ~~~~~la~~~----~~~---g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e--eAl~~~~~al~l~p~~~a~~ 546 (760)
.+|+..+.++ ... +++++++..+.++++.+|.+..+|...++++...|.++ ++++.++++++.+|.+
T Consensus 104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N---- 179 (306)
T 3dra_A 104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN---- 179 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC----
Confidence 9999999999 777 89999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhcch--HHH
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ------LDLAADCYSNALKIRHT--RAH 618 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~------~~eA~~~~~~Al~~~~~--~a~ 618 (760)
..+|+..+.++...++ ++++++++++++..+|. .+|
T Consensus 180 ------------------------------------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW 223 (306)
T 3dra_A 180 ------------------------------------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW 223 (306)
T ss_dssp ------------------------------------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH
Confidence 4555555555555555 88999999999998776 899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHcCCH
Q 004336 619 QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQL---DPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 619 ~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l---~p~~~~~~~~La~~~~~~g~~ 695 (760)
+.++.++...|+..++.. ....+++.+ +|.++.++..+|.++.+.|+.
T Consensus 224 ~y~~~ll~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLE-----------------------------EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp HHHHHHHHHTTCCGGGGH-----------------------------HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCChHHHH-----------------------------HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 999999999887533222 122222223 377888899999999999999
Q ss_pred HHHHHHHHHHHH-cCCCcHHHH
Q 004336 696 NEAIAELSRAIA-FKADLHLLH 716 (760)
Q Consensus 696 ~eAi~~l~kal~-~~p~~~~~~ 716 (760)
++|++.|+.+.+ .+|-...++
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHHhccChHHHHHH
Confidence 999999999987 788877766
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.66 E-value=1.6e-16 Score=150.10 Aligned_cols=144 Identities=9% Similarity=-0.027 Sum_probs=124.9
Q ss_pred HHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 004336 429 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 508 (760)
Q Consensus 429 lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~ 508 (760)
||.++...|++++|+..+ ++++..+|+++..++.+|.+|...|++++|++.|+++++++|++
T Consensus 3 LG~~~~~~~~~e~ai~~~------------------~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~ 64 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASV------------------QGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD 64 (150)
T ss_dssp ----CCCHHHHHHHHHHH------------------HHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHcChHHHHHHHH------------------HHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 677888888999999888 88888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHH
Q 004336 509 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN 588 (760)
Q Consensus 509 ~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~ 588 (760)
+.+|..+|.++...|++++|+..|+++++++|++ ..++++
T Consensus 65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------------------------------------~~~~~~ 104 (150)
T 4ga2_A 65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ----------------------------------------KDLVLK 104 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC----------------------------------------HHHHHH
Confidence 9999999999999999999999999999999998 788899
Q ss_pred HHHHHHHcCCHHHHHHH-HHHHHhhcch--HHHHHHHHHHHHcCC
Q 004336 589 LGSVYVDCGQLDLAADC-YSNALKIRHT--RAHQGLARVHFLKNN 630 (760)
Q Consensus 589 Lg~~y~~~g~~~eA~~~-~~~Al~~~~~--~a~~~La~~~~~~g~ 630 (760)
+|.+|...|++++|... ++++++++|. .++..++.++...|+
T Consensus 105 la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 105 IAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999877765 5889987776 777788888887775
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.66 E-value=8.2e-15 Score=147.97 Aligned_cols=180 Identities=7% Similarity=-0.061 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQ 499 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~ 499 (760)
..+++.+|..+...|++++|+..+ ++++...|.+ ..+++.+|.+|...|++++|+..|+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~------------------~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~ 65 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQL------------------EALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAID 65 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 367889999999999999999999 9999998876 4789999999999999999999999
Q ss_pred HHHHhCCCcHH---HHHHHHHHHHH------------------CCCHHHHHHHHHHHHhhcCCh-HHH---HHHHHHHHc
Q 004336 500 LARQHAASDHE---RLVYEGWILYD------------------TSHCEEGLRKAEESIQMKRSF-EAF---FLKAYALAD 554 (760)
Q Consensus 500 kal~~~p~~~~---a~~~Lg~i~~~------------------~g~~eeAl~~~~~al~l~p~~-~a~---~~la~~l~~ 554 (760)
++++..|++.. +++.+|.++.. .|++++|+..|+++++..|+. .+. ..++.+...
T Consensus 66 ~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 66 RFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 99999998764 78999999876 679999999999999999998 332 222222222
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcC
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKN 629 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g 629 (760)
. ......+|.+|...|++++|+..|+++++..|. .++..+|.++...|
T Consensus 146 ~---------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 198 (225)
T 2yhc_A 146 L---------------------------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQ 198 (225)
T ss_dssp H---------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred H---------------------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcC
Confidence 1 455678899999999999999999999997654 68999999999999
Q ss_pred CHHHHHHHHHHHHHhccC
Q 004336 630 NKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 630 ~~~~A~~~l~~al~~~~~ 647 (760)
++++|++.++++....|.
T Consensus 199 ~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 199 MNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp CHHHHHHHHHHHHHCCSC
T ss_pred CcHHHHHHHHHHHhhCCC
Confidence 999999999988877763
No 111
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.65 E-value=1.5e-15 Score=156.53 Aligned_cols=123 Identities=12% Similarity=-0.016 Sum_probs=104.5
Q ss_pred hcCCHHHHHHHHHHHHhhC-----CCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 395 LRKEYDEAEHLFEAILTLS-----PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~-----P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
..|++++|+..|++++... ++++ ....++..+|.++...|++++|+.++ .+++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~------------------~~al~ 71 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHP---DVATMLNILALVYRDQNKYKEAAHLL------------------NDALA 71 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHcccHHHHHHHH------------------HHHHH
Confidence 3457888888888887742 1221 22478999999999999999999999 77776
Q ss_pred h--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 004336 470 S--------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 470 ~--------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
. .|..+.++..+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+..++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 151 (283)
T 3edt_B 72 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5 4667889999999999999999999999999988 46778899999999999999999999999
Q ss_pred HHHhh
Q 004336 534 ESIQM 538 (760)
Q Consensus 534 ~al~l 538 (760)
+++++
T Consensus 152 ~al~~ 156 (283)
T 3edt_B 152 RALEI 156 (283)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 112
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.65 E-value=3.4e-16 Score=148.92 Aligned_cols=105 Identities=20% Similarity=0.281 Sum_probs=89.7
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccC-CCC-CCccceeEecCCCCCHHHHHHHHhccccCc--------------
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG-SFM-ESLCEDIDLSENNISPSGLRIISDFSVTGS-------------- 246 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~-~~~-e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~-------------- 246 (760)
|+|.. +|++|++||.+ |++|+||++||.+ |+. |+....|.|+ +|++.+|+.|++|+|+++
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~--~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLP--NVNAAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECT--TSCHHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCC--CccHHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 78864 79999999999 9999999999998 888 8888899998 899999999999999999
Q ss_pred ------------cCCCChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHH
Q 004336 247 ------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMG 293 (760)
Q Consensus 247 ------------~~~~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~ 293 (760)
+. ++.+++++||.|||+|++..|.+.||.|++..+.. .++.++.+
T Consensus 80 ~~~~i~~wD~~F~~-id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~g-kt~eeir~ 136 (159)
T 2ast_A 80 RTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG-KTPEEIRK 136 (159)
T ss_dssp -CCCCCHHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSS-CCHHHHHH
T ss_pred chhhhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 86 99999999999999999999999999999988853 34444333
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.63 E-value=1.3e-14 Score=146.51 Aligned_cols=175 Identities=8% Similarity=-0.029 Sum_probs=152.0
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++.+|..++..|+|++|+..|++++...|+.+. ...+++.+|.++...|++++|+..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~---------------- 64 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY---SQQVQLDLIYAYYKNADLPLAQAAI---------------- 64 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT---HHHHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHHHhcCCHHHHHHHH----------------
Confidence 456778888888888999999999999999998741 1268999999999999999999999
Q ss_pred HHHHHHHhCCCcHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCcHHHH---------
Q 004336 463 VIYQMLESDAPKGV---LYFRQSLLLLR------------------LNCPEAAMRSLQLARQHAASDHERL--------- 512 (760)
Q Consensus 463 ~~~~al~~~p~~~~---~~~~la~~~~~------------------~g~~~~Ai~~l~kal~~~p~~~~a~--------- 512 (760)
++++..+|++.. +++.+|.++.. .|++++|+..|+++++..|++..++
T Consensus 65 --~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 65 --DRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL 142 (225)
T ss_dssp --HHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred --HHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 999999998864 89999999886 5799999999999999999986543
Q ss_pred --------HHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHH
Q 004336 513 --------VYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 584 (760)
Q Consensus 513 --------~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~ 584 (760)
..+|.+|...|++++|+..|+++++..|++. . ...
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------------------------~-------------~~~ 185 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ------------------------A-------------TRD 185 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH------------------------H-------------HHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC------------------------c-------------cHH
Confidence 5789999999999999999999999999870 0 047
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
++..+|.+|...|++++|+..++++....|.
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 8899999999999999999999988875443
No 114
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.62 E-value=3.6e-16 Score=170.64 Aligned_cols=315 Identities=12% Similarity=0.020 Sum_probs=175.4
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
..+|..+|..++..|++++|++.|.++ +++ .++..++..+...|++++|+.++
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~------~~y~~V~~~ae~~g~~EeAi~yl---------------- 84 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP------SSYMEVVQAANTSGNWEELVKYL---------------- 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCH------HHHHHHHHHHHhCCCHHHHHHHH----------------
Confidence 358999999999999999999999764 333 67788888999999999999988
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+.+.+.. .++.+...++.+|.+.|++.++.+.++. | +..+|..+|..+...|+|++|...|.++
T Consensus 85 --~~ark~~-~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 --QMARKKA-RESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-------
T ss_pred --HHHHHhC-ccchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 5555543 3367788899999999999999988852 4 3469999999999999999999999977
Q ss_pred HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHH
Q 004336 543 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLA 622 (760)
Q Consensus 543 ~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La 622 (760)
..|..+|.++... |.+++|++.+.++. .+.+|..++.++...|+++.|..+... +...|.. ...+.
T Consensus 149 ~n~~~LA~~L~~L-----------g~yq~AVea~~KA~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~-l~~lv 214 (449)
T 1b89_A 149 SNFGRLASTLVHL-----------GEYQAAVDGARKAN-STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE-LEELI 214 (449)
T ss_dssp TCHHHHHHHHHTT-----------TCHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH-HHHHH
T ss_pred hhHHHHHHHHHHh-----------ccHHHHHHHHHHcC-CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh-HHHHH
Confidence 3578999999998 99999999999995 478999999999999999999888775 3344443 44688
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hc--CCHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHH
Q 004336 623 RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EY--CDRELTRADLEMVTQLDP-----LRVYPYRYRAAVLMD 691 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~--~~~~~A~~~l~kal~l~p-----~~~~~~~~La~~~~~ 691 (760)
..|.+.|++++|+.++++++..++....++..++ +| ++..+.++.|...+.+.| .++..|..+..+|..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998777766653 22 455677777777777777 788899999999999
Q ss_pred cCCHHHHHHHHHHHHHc------------CCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 692 SHKENEAIAELSRAIAF------------KADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 692 ~g~~~eAi~~l~kal~~------------~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
.++++.|+...-..... ++.+..++.+ ..+|. +....++..+..++.-.-++..+...+.+..
T Consensus 295 ~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 295 YEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp TTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred hchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 99999999866554433 4556666666 34444 5667789999999865556677777766654
No 115
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.62 E-value=3.2e-13 Score=143.51 Aligned_cols=251 Identities=13% Similarity=0.027 Sum_probs=181.4
Q ss_pred hcCCHH-HHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC----------HHHHHHHHhhhccccccCCcCcHHH
Q 004336 395 LRKEYD-EAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN----------WTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 395 ~~g~~~-eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~----------~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..|++. +|+.++++++..+|++. .+|+..+.+....+. +++++.++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~y------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~----------------- 97 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFA------TLWNCRREVLQHLETEKSPEESAALVKAELGFL----------------- 97 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCH------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-----------------
T ss_pred HcCCCCHHHHHHHHHHHHHCchhH------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHH-----------------
Confidence 345665 89999999999999995 889989888877765 56777777
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhcC
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNC--PEAAMRSLQLARQHAASDHERLVYEGWILYDTSH-CEEGLRKAEESIQMKR 540 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~--~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~-~eeAl~~~~~al~l~p 540 (760)
..++..+|.+..+|+..+.++...|+ +++++.++.++++.+|.+..+|.+.+++....|. ++++++.+.++++.+|
T Consensus 98 -~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p 176 (331)
T 3dss_A 98 -ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 176 (331)
T ss_dssp -HHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred -HHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999994 8999999999999999999999999999999999 6999999999999999
Q ss_pred Ch-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HH
Q 004336 541 SF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA 617 (760)
Q Consensus 541 ~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a 617 (760)
.+ .+|...+.++.....+.... . .+ -...+.++++++++.+++..+|. .+
T Consensus 177 ~N~SAW~~R~~ll~~l~~~~~~~--------------------~-----~~--~~~~~~~~eEle~~~~ai~~~P~d~Sa 229 (331)
T 3dss_A 177 SNYSSWHYRSCLLPQLHPQPDSG--------------------P-----QG--RLPENVLLKELELVQNAFFTDPNDQSA 229 (331)
T ss_dssp CCHHHHHHHHHHHHHHSCCC---------------------------------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccc--------------------c-----cc--ccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99 66666666655431110000 0 00 00114578899999999987776 67
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH---HcC
Q 004336 618 HQGLARVHFLK-NNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM---DSH 693 (760)
Q Consensus 618 ~~~La~~~~~~-g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~---~~g 693 (760)
|+.+..++... |... ....+ .+..+++++.+.++++++|++...+..++.+.. ..|
T Consensus 230 W~Y~r~ll~~~~~~~~---------------~~~~~-----~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~ 289 (331)
T 3dss_A 230 WFYHRWLLGAGSGRCE---------------LSVEK-----STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 289 (331)
T ss_dssp HHHHHHHHHSSSCGGG---------------CCHHH-----HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHhccCccc---------------cchHH-----HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccc
Confidence 76554444433 3100 00000 012356666666777777766444433333221 356
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHH
Q 004336 694 KENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 694 ~~~eAi~~l~kal~~~p~~~~~~ 716 (760)
..++....+.+.++++|.....+
T Consensus 290 ~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 290 YEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp THHHHHHHHHHHHHHCGGGHHHH
T ss_pred cHHHHHHHHHHHHHhCcchhhHH
Confidence 77788888888888888776555
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.61 E-value=2.2e-14 Score=152.21 Aligned_cols=243 Identities=12% Similarity=0.007 Sum_probs=180.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
..|++++|..+++++.+..+... +...++++.|..++ .+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~---------------~~~~~~~~~A~~~~------------------~~-------- 41 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF---------------MKWKPDYDSAASEY------------------AK-------- 41 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS---------------SSCSCCHHHHHHHH------------------HH--------
T ss_pred ccchHHHHHHHHHHHHHHccccc---------------cCCCCCHHHHHHHH------------------HH--------
Confidence 35699999999999988776421 00147888888887 43
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 548 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~l 548 (760)
.|.+|...|++++|+..|++++++.+.. ..++.++|.+|..+|++++|+..|++++.+.+..
T Consensus 42 ------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------ 109 (307)
T 2ifu_A 42 ------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN------ 109 (307)
T ss_dssp ------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT------
T ss_pred ------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------
Confidence 3678899999999999999999886432 4678899999999999999999999999875433
Q ss_pred HHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--------HHHHH
Q 004336 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQG 620 (760)
Q Consensus 549 a~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~ 620 (760)
+.... .+.++.++|.+|.. |++++|+.+|++++++.+. .++.+
T Consensus 110 ------------------g~~~~----------~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 110 ------------------GTPDT----------AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp ------------------TCHHH----------HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------CCHHH----------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 11111 05788999999999 9999999999999986432 68899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004336 621 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700 (760)
Q Consensus 621 La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~ 700 (760)
+|.+|...|++++|+..|+++++..+.....+. ....+..+|.++...|++++|+.
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT------------------------CYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------------------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH------------------------HHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999888763321110 12356778899999999999999
Q ss_pred HHHHHHHcCCCcHH---HH-H--HHHHHHHcCCHHHHHHH--HHHHHhcCCCc
Q 004336 701 ELSRAIAFKADLHL---LH-L--RAAFHEHTGDVLGALRD--CRAALSVDPND 745 (760)
Q Consensus 701 ~l~kal~~~p~~~~---~~-l--~a~~~~~~g~~~~A~~~--~~~aL~l~P~~ 745 (760)
.|++++ ..|+... .. + ....+ ..|+.+.+... +..+..++|..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~~~~~~~~ld~~~ 267 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRSPLVTYMDNDY 267 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHTTSHHHHTSCHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHHhCchhhhhhHHH
Confidence 999999 8886542 11 1 13334 34776555442 33444454433
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.60 E-value=4.1e-15 Score=143.99 Aligned_cols=163 Identities=10% Similarity=0.012 Sum_probs=140.4
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+...|..++..|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+ +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~la~~~~~~g~~~~A~~~~------------------~ 64 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRG------DVKLAKADCLLETKQFELAQELL------------------A 64 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH------HHHHHHHHHHHHTTCHHHHHHHH------------------T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHHCCCHHHHHHHH------------------H
Confidence 45566677777799999999999999999996 99999999999999999999999 8
Q ss_pred HHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 466 QMLESDAPKGVLYFRQSLLL-LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~-~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
+++..+| ++..+..++.+. ...+...+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++
T Consensus 65 ~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-- 141 (176)
T 2r5s_A 65 TIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA-- 141 (176)
T ss_dssp TCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT--
T ss_pred HhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--
Confidence 8888889 777766666543 333445568999999999999999999999999999999999999999999999876
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
....++.++|.++...|++++|+..|++++.
T Consensus 142 ------------------------------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 142 ------------------------------------QDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ------------------------------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ------------------------------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 0035788889999999999999999998864
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.60 E-value=9.3e-15 Score=133.69 Aligned_cols=121 Identities=13% Similarity=0.075 Sum_probs=112.3
Q ss_pred HHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004336 408 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 487 (760)
Q Consensus 408 ~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~ 487 (760)
++..++|+.. .++..+|..+.+.|++++|+..+ .+++..+|.++.+++++|.+|..
T Consensus 4 r~a~inP~~a------~~~~~~G~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~~~~~~~~ 59 (126)
T 4gco_A 4 RLAYINPELA------QEEKNKGNEYFKKGDYPTAMRHY------------------NEAVKRDPENAILYSNRAACLTK 59 (126)
T ss_dssp ---CCCHHHH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHCHHHH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHhhHHHh
Confidence 3445788874 89999999999999999999999 99999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHH
Q 004336 488 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYAL 552 (760)
Q Consensus 488 ~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l 552 (760)
+|++++|+..|+++++++|++..+++.+|.++..+|++++|+..|+++++++|++ +++..++.++
T Consensus 60 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 60 LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999 8888877653
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.60 E-value=2.3e-14 Score=131.08 Aligned_cols=117 Identities=14% Similarity=0.012 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
.++.|.++...|..++.+|+|++|+..|+++++++|+++ .++..+|.++...|++++|+..+
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~------------ 70 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA------ILYSNRAACLTKLMEFQRALDDC------------ 70 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHhhHHHhhccHHHHHHHH------------
Confidence 467888999999999999999999999999999999996 99999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 519 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~ 519 (760)
.+++..+|+++.+++++|.++..+|++++|+..|+++++++|++.+++..++.++
T Consensus 71 ------~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 71 ------DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ------HHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999998764
No 120
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.59 E-value=5.3e-16 Score=169.33 Aligned_cols=286 Identities=13% Similarity=-0.027 Sum_probs=140.6
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
..|+.++|.+.+++. +++ .+|..+|.++...|++++|+..+ .+ ..+
T Consensus 15 ~~~~ld~A~~fae~~-----~~~------~vWs~La~A~l~~g~~~eAIdsf------------------ik-----a~D 60 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEP------AVWSQLAKAQLQKGMVKEAIDSY------------------IK-----ADD 60 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CCh------HHHHHHHHHHHHcCCHHHHHHHH------------------Hc-----CCC
Confidence 445899999999998 333 67889999999999999999988 43 246
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
+..+...+..+...|++++|+.+++.+++..++ +.+...++.+|.+.|+++++.+.++ .|+..+|..+|..+..
T Consensus 61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYD 134 (449)
T ss_dssp -------------------------------------------------CHHHHTTTTT-----CC--------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHH
Confidence 668889999999999999999999999986443 7778899999999999999988885 3555899999999999
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHH
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTA 634 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A 634 (760)
. |.+++|...|... ..|..+|.++...|+|++|++.|+++ +.+.+|.....++...|+++.|
T Consensus 135 ~-----------g~yeeA~~~Y~~a----~n~~~LA~~L~~Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 135 E-----------KMYDAAKLLYNNV----SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp -------------CTTTHHHHHHHT----TCHHHHHHHHHTTTCHHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHH
T ss_pred c-----------CCHHHHHHHHHHh----hhHHHHHHHHHHhccHHHHHHHHHHc---CCchhHHHHHHHHHHcCcHHHH
Confidence 9 9999999999876 68899999999999999999999999 4568999999999999999999
Q ss_pred HHHHHHHHHhccCcH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCC-
Q 004336 635 YEEMTKLIKKARNNA-SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD--SHKENEAIAELSRAIAFKA- 710 (760)
Q Consensus 635 ~~~l~~al~~~~~~~-~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~--~g~~~eAi~~l~kal~~~p- 710 (760)
......++ ..|+.. .+-......|++++|+..+++++.+++.....+..+|.+|.+ .++..++++.|.+.+.+.|
T Consensus 197 ~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~ 275 (449)
T 1b89_A 197 QMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 275 (449)
T ss_dssp HHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHH
T ss_pred HHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHH
Confidence 87777643 555332 222223345999999999999999999999999999988865 4577788888877766665
Q ss_pred ----CcHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 004336 711 ----DLHLLHLR-AAFHEHTGDVLGALRDCRAAL 739 (760)
Q Consensus 711 ----~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL 739 (760)
+...+|.. ..+|.+.++++.|+...-+..
T Consensus 276 ~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 276 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 44445544 677778899999988655543
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.59 E-value=1.9e-14 Score=151.26 Aligned_cols=168 Identities=15% Similarity=0.081 Sum_probs=153.7
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
....++.+|..+...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+.++
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~la~~~~~~g~~~~A~~~l--------------- 174 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG------EIGLLLAETLIALNRSEDAEAVL--------------- 174 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch------hHHHHHHHHHHHCCCHHHHHHHH---------------
Confidence 445677888888888899999999999999999996 99999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
++++..+|+........+..+...++.++|+..|++++..+|++..+++.+|.++...|++++|+..|+++++.+|+
T Consensus 175 ---~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 175 ---XTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp ---TTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---HhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 88888999888888888888999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
+ ....++.++|.++...|+.++|...|++++.
T Consensus 252 ~--------------------------------------~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 252 A--------------------------------------ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp G--------------------------------------GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred c--------------------------------------ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 7 1146788899999999999999999998875
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.57 E-value=1.5e-14 Score=140.09 Aligned_cols=162 Identities=10% Similarity=0.015 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..+..+|..+...|++++|+..+ ++++..+|+++.+++.+|.++...|++++|+..|++++.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~------------------~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVI------------------QTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHH------------------HTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 55677888888899999998888 888888899999999999999999999999999999988
Q ss_pred hCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 504 HAASDHERLVYEGWILY-DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~-~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
..| ++..+..++.+.. ..+...+|+..++++++.+|++
T Consensus 69 ~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~---------------------------------------- 107 (176)
T 2r5s_A 69 EYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDN---------------------------------------- 107 (176)
T ss_dssp GGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC----------------------------------------
T ss_pred ccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC----------------------------------------
Confidence 888 7776666665533 3334456788899999888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~ 644 (760)
..+++++|.++...|++++|+..|+++++.+|. .++..+|.++...|+.++|+..|++++..
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 889999999999999999999999999998764 58999999999999999999999988753
No 123
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.57 E-value=3.5e-14 Score=163.95 Aligned_cols=163 Identities=13% Similarity=-0.029 Sum_probs=133.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH
Q 004336 396 RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 475 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~ 475 (760)
.|++++|+..|+++++.+|++. .++..+|.++...|++++|+.++ +++++.+|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~------------------~~al~~~p~~~ 57 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF------VAWLMLADAELGMGDTTAGEMAV------------------QRGLALHPGHP 57 (568)
T ss_dssp -------------------CCH------HHHHHHHHHHHHHTCHHHHHHHH------------------HHHHTTSTTCH
T ss_pred CccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCH
Confidence 3689999999999999999995 89999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcc
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 555 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~ 555 (760)
.+++.+|.+|...|++++|++.|+++++.+|++..++.++|.++...|++++|+..|+++++.+|++
T Consensus 58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------- 124 (568)
T 2vsy_A 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------------- 124 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhcch--HHHHHHH
Q 004336 556 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC---GQLDLAADCYSNALKIRHT--RAHQGLA 622 (760)
Q Consensus 556 ~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~---g~~~eA~~~~~~Al~~~~~--~a~~~La 622 (760)
..++.++|.++... |++++|...|+++++.+|. ..+..++
T Consensus 125 ---------------------------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 125 ---------------------------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp ---------------------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ---------------------------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 78888999999999 9999999999999998776 5555555
No 124
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.56 E-value=8.1e-14 Score=146.46 Aligned_cols=163 Identities=10% Similarity=0.033 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.++..+|..+...|++++|+..+ ++++..+|+++.+++.+|.++...|++++|+..|++++.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~------------------~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLL------------------XDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred hhHHHHHHHHHhCCCHHHHHHHH------------------HHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 88899999999999999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 583 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~ 583 (760)
.+|+....+...+..+...++.++|+..+++++..+|++ .
T Consensus 180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~----------------------------------------~ 219 (287)
T 3qou_A 180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED----------------------------------------A 219 (287)
T ss_dssp GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC----------------------------------------H
T ss_pred hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc----------------------------------------H
Confidence 999877777888888999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~ 644 (760)
.+++++|.++...|++++|+..|+++++.+|. .++.+++.++...|+.++|...|++++..
T Consensus 220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 89999999999999999999999999997664 68999999999999999999999987753
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.56 E-value=1.1e-14 Score=137.71 Aligned_cols=114 Identities=5% Similarity=-0.071 Sum_probs=107.5
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
++++..+|+++.+++.+|.++.+.|++++|+..|++++.++|+++.+|.++|.++...|++++|+..|+++++++|++
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-- 103 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-- 103 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC--
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC--
Confidence 778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHH
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAH 618 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~ 618 (760)
+.+++++|.+|...|++++|+.+|+++++..|+..+
T Consensus 104 --------------------------------------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~ 139 (151)
T 3gyz_A 104 --------------------------------------YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139 (151)
T ss_dssp --------------------------------------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred --------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH
Confidence 788999999999999999999999999998877543
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.56 E-value=3.7e-14 Score=150.45 Aligned_cols=209 Identities=12% Similarity=0.046 Sum_probs=161.2
Q ss_pred ccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 004336 436 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR-LNCPEAAMRSLQLARQHAASDHERLVY 514 (760)
Q Consensus 436 ~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~Ai~~l~kal~~~p~~~~a~~~ 514 (760)
.|++++|..++ +++....+.. ++. .+++++|+..|.++
T Consensus 4 ~~~~~eA~~~~------------------~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a------------- 42 (307)
T 2ifu_A 4 AQKISEAHEHI------------------AKAEKYLKTS----------FMKWKPDYDSAASEYAKA------------- 42 (307)
T ss_dssp HHHHHHHHHHH------------------HHHHHHHCCC----------SSSCSCCHHHHHHHHHHH-------------
T ss_pred cchHHHHHHHH------------------HHHHHHcccc----------ccCCCCCHHHHHHHHHHH-------------
Confidence 56777888888 6666555432 112 57889998888876
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHH
Q 004336 515 EGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV 594 (760)
Q Consensus 515 Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~ 594 (760)
|.+|...|++++|+..|++++.+.+.. +....+ +.++.++|.+|.
T Consensus 43 -~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------~~~~~~----------a~~~~~lg~~~~ 87 (307)
T 2ifu_A 43 -AVAFKNAKQLEQAKDAYLQEAEAHANN------------------------RSLFHA----------AKAFEQAGMMLK 87 (307)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHHHHT------------------------TCHHHH----------HHHHHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHHHHHHHHHHc------------------------CCHHHH----------HHHHHHHHHHHH
Confidence 678889999999999999999765433 111111 578899999999
Q ss_pred HcCCHHHHHHHHHHHHhhcc-----h---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHH
Q 004336 595 DCGQLDLAADCYSNALKIRH-----T---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRA 666 (760)
Q Consensus 595 ~~g~~~eA~~~~~~Al~~~~-----~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~ 666 (760)
..|++++|+.+|++++++.+ . .++.++|.+|.. |++++|+..|+++++..+..+. ..
T Consensus 88 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~----------~~---- 152 (307)
T 2ifu_A 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER----------LR---- 152 (307)
T ss_dssp HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC----------HH----
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC----------hh----
Confidence 99999999999999998632 1 688899999988 9999999999999887663211 00
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 004336 667 DLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH------LLHLR-AAFHEHTGDVLGALRDCRAAL 739 (760)
Q Consensus 667 ~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~------~~~l~-a~~~~~~g~~~~A~~~~~~aL 739 (760)
....++.++|.++..+|++++|+..|++++.+.|+.. ..++. +.++..+|++++|+..|++++
T Consensus 153 ----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 153 ----------QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp ----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 0135678899999999999999999999998865432 12333 778888899999999999999
Q ss_pred hcCCCcH
Q 004336 740 SVDPNDQ 746 (760)
Q Consensus 740 ~l~P~~~ 746 (760)
++|+..
T Consensus 223 -~~p~~~ 228 (307)
T 2ifu_A 223 -SIPGFS 228 (307)
T ss_dssp -TSTTST
T ss_pred -CCCCCC
Confidence 999765
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.55 E-value=1e-14 Score=137.90 Aligned_cols=121 Identities=9% Similarity=-0.105 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
++-.+-..+++++.++|++. .+++.+|.++...|++++|+.++ ++++..+|+++.+
T Consensus 17 ~~~~~~~~l~~al~l~p~~~------~~~~~lg~~~~~~g~~~eA~~~~------------------~~al~~~P~~~~~ 72 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMM------DDIYSYAYDFYNKGRIEEAEVFF------------------RFLCIYDFYNVDY 72 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHH
T ss_pred HHHHCCCCHHHHhCCCHHHH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHH
Confidence 33334466788899999995 99999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
|+++|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|++++++.|+.
T Consensus 73 ~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 73 IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999988
No 128
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.55 E-value=2.7e-12 Score=136.40 Aligned_cols=229 Identities=10% Similarity=-0.011 Sum_probs=187.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNC----------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSH--CEEGLRKA 532 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~----------~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~--~eeAl~~~ 532 (760)
.+++..+|++..+|+..+.++...+. +++++..+..++..+|.+..+|...++++...|+ +++++..+
T Consensus 54 ~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 133 (331)
T 3dss_A 54 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 133 (331)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHH
Confidence 99999999999999999999988776 6899999999999999999999999999999994 89999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 004336 533 EESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ-LDLAADCYSNALK 611 (760)
Q Consensus 533 ~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~-~~eA~~~~~~Al~ 611 (760)
.++++.+|.+ ..+|+..+.+....|. ++++++++.++++
T Consensus 134 ~k~l~~dprN----------------------------------------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 134 ARFLEADERN----------------------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC----------------------------------------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 9999999999 6778888888888888 6999999999999
Q ss_pred hcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 004336 612 IRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVL 689 (760)
Q Consensus 612 ~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~ 689 (760)
.+|. .+|..++.+....+....+- .. .....+.++++++.+.+++..+|++..+|+++..++
T Consensus 174 ~~p~N~SAW~~R~~ll~~l~~~~~~~-----------~~-----~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 174 RNFSNYSSWHYRSCLLPQLHPQPDSG-----------PQ-----GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HCSCCHHHHHHHHHHHHHHSCCC----------------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHhhhccccc-----------cc-----cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8776 89999999888774321110 00 000012357888999999999999999998887777
Q ss_pred HHc-----------CCHHHHHHHHHHHHHcCCCcHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 690 MDS-----------HKENEAIAELSRAIAFKADLHLLHLRAAFH----EHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 690 ~~~-----------g~~~eAi~~l~kal~~~p~~~~~~l~a~~~----~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
... +.++++++.+.++++..|++.-..+....+ ...|..++....+.+.+++||....-.
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 766 568999999999999999985333332222 234888999999999999999877544
No 129
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.55 E-value=1.4e-13 Score=158.92 Aligned_cols=162 Identities=11% Similarity=0.024 Sum_probs=134.6
Q ss_pred ccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 004336 436 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 515 (760)
Q Consensus 436 ~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~L 515 (760)
.|++++|+.++ +++++.+|++..+++.+|.++...|++++|++.|+++++.+|++..++..+
T Consensus 2 ~g~~~~A~~~~------------------~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 63 (568)
T 2vsy_A 2 TADGPRELLQL------------------RAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63 (568)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHH
T ss_pred CccHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 36778888888 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH
Q 004336 516 GWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD 595 (760)
Q Consensus 516 g~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~ 595 (760)
|.++..+|++++|+..|+++++++|++ ..++.++|.+|..
T Consensus 64 g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------------------------~~~~~~la~~~~~ 103 (568)
T 2vsy_A 64 GRVRWTQQRHAEAAVLLQQASDAAPEH----------------------------------------PGIALWLGHALED 103 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCC----------------------------------------HHHHHHHHHHHHH
Confidence 999999999999999999999999998 7899999999999
Q ss_pred cCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHc---CCHHHHHHHHHHHHHhccCcHHHHHHH
Q 004336 596 CGQLDLAADCYSNALKIRHT--RAHQGLARVHFLK---NNKTTAYEEMTKLIKKARNNASAYEKR 655 (760)
Q Consensus 596 ~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~---g~~~~A~~~l~~al~~~~~~~~~~~~~ 655 (760)
.|++++|+..|+++++.+|. .++.++|.++... |++++|.+.++++++..|.....+..+
T Consensus 104 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 104 AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence 99999999999999998776 8999999999999 999999999999999998765555444
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.53 E-value=6.1e-13 Score=133.06 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=130.4
Q ss_pred HHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHH
Q 004336 401 EAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 480 (760)
Q Consensus 401 eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~ 480 (760)
+|+.+|+++.+. .++ .+++.+|.++...+++++|+.++ ++++.. .++.++++
T Consensus 4 eA~~~~~~aa~~--g~~------~a~~~lg~~~~~~~~~~~A~~~~------------------~~a~~~--g~~~a~~~ 55 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDR------RAQYYLADTWVSSGDYQKAEYWA------------------QKAAAQ--GDGDALAL 55 (212)
T ss_dssp CTTHHHHHHHHT--TCH------HHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHT--TCHHHHHH
T ss_pred hHHHHHHHHHHC--CCH------HHHHHHHHHHhcCCCHHHHHHHH------------------HHHHHc--CCHHHHHH
Confidence 466777777654 443 77777888887788888888777 666653 56777788
Q ss_pred HHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcCC--hHHHHHHHH
Q 004336 481 QSLLLLRLN----CPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRS--FEAFFLKAY 550 (760)
Q Consensus 481 la~~~~~~g----~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p~--~~a~~~la~ 550 (760)
+|.+|.. + ++++|+.+|+++.+ +.++.++++||.+|.. .+++++|+.+|+++.+..|. +
T Consensus 56 lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~-------- 124 (212)
T 3rjv_A 56 LAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA-------- 124 (212)
T ss_dssp HHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH--------
T ss_pred HHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch--------
Confidence 8887777 6 78888888888754 4677778888888776 77888888888888777663 2
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh-cchHHHHHHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKI-RHTRAHQGLARVH 625 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~-~~~~a~~~La~~~ 625 (760)
+.+++++|.+|.. .+++++|+.+|+++.+. +...++++||.+|
T Consensus 125 --------------------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 125 --------------------------------VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMF 172 (212)
T ss_dssp --------------------------------HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5677778888877 77888888888888887 5557888888888
Q ss_pred HHc-C-----CHHHHHHHHHHHHHhcc
Q 004336 626 FLK-N-----NKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 626 ~~~-g-----~~~~A~~~l~~al~~~~ 646 (760)
... | ++++|+.+|+++++...
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 764 3 78888888887777654
No 131
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.51 E-value=5.5e-13 Score=120.37 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=127.2
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
.+++.+|..+...|++++|+..|++++..+|++. .++..+|.++...|++++|..++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~----------------- 58 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA------EAWYNLGNAYYKQGDYDEAIEYY----------------- 58 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH-----------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch------hHHHHHHHHHHHhcCHHHHHHHH-----------------
Confidence 4577888888889999999999999999999885 88899999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.+++...|.+...++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus 59 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 59 -QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp -HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred -HHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998886
No 132
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.51 E-value=1.2e-12 Score=130.79 Aligned_cols=172 Identities=13% Similarity=0.026 Sum_probs=124.8
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS----HCEEGLRKAEESI 536 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g----~~eeAl~~~~~al 536 (760)
+..++++... .++.+++.+|.+|...+++++|+.+|+++.+. .++.++++||.+|.. + ++++|+.+|+++.
T Consensus 6 ~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 6 GSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp THHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344777664 67888888888888888888888888888764 577888888888887 6 7888888888885
Q ss_pred hhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 004336 537 QMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKI 612 (760)
Q Consensus 537 ~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~ 612 (760)
+ +.+ +.+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 81 ~--~g~----------------------------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 81 E--AGS----------------------------------------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp H--TTC----------------------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred H--CCC----------------------------------------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 3 344 5677777777776 78888888888888887
Q ss_pred cc----hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 004336 613 RH----TRAHQGLARVHFL----KNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRY 684 (760)
Q Consensus 613 ~~----~~a~~~La~~~~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~ 684 (760)
++ ..++++||.+|.. .+++++|+.+|+ ++.+. |.++.++++
T Consensus 119 ~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~------------------------------~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 119 SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK------------------------------GSSSL-SRTGYAEYW 167 (212)
T ss_dssp TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH------------------------------HHHHT-SCTTHHHHH
T ss_pred CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH------------------------------HHHHc-CCCHHHHHH
Confidence 77 5788888888877 555544444444 44444 345556777
Q ss_pred HHHHHHHc-C-----CHHHHHHHHHHHHHcCC
Q 004336 685 RAAVLMDS-H-----KENEAIAELSRAIAFKA 710 (760)
Q Consensus 685 La~~~~~~-g-----~~~eAi~~l~kal~~~p 710 (760)
+|.+|... | ++++|+.+|+++.+...
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77777654 2 77777777777776543
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.50 E-value=1.1e-13 Score=143.10 Aligned_cols=197 Identities=11% Similarity=-0.057 Sum_probs=166.3
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHH-------HHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLH-------MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~l-------g~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
..+++.+|...|.+++..+|+.. ++|..+ +.++...++..+++..+ .+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~------Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~------------------~~~ 73 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESAC------DAWIGRIRCGDTDRVTLFRAWYSRRNFGQL------------------SGS 73 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHTTCCCHHHHHHHHHTGGGTTHH------------------HHT
T ss_pred cCCCHHHHHHHHHHHHHhChhhh------HHHHhHHHccCCcHHHHHHHHHHHHHHHHH------------------HHH
Confidence 45799999999999999999996 888888 77777777777776666 777
Q ss_pred HHhCCCcH---------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Q 004336 468 LESDAPKG---------------------VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 468 l~~~p~~~---------------------~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e 526 (760)
+++.|... +++..++.++...|++++|.+.|+..+...|++. +++.+|.+++..|+++
T Consensus 74 l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~ 152 (282)
T 4f3v_A 74 VQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWT 152 (282)
T ss_dssp TTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHH
T ss_pred hcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHH
Confidence 77666543 3445588899999999999999999999999888 9999999999999999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 527 EGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCY 606 (760)
Q Consensus 527 eAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~ 606 (760)
+|+..|+++....+.. ....+++++|.++...|++++|+.+|
T Consensus 153 dA~~~l~~a~~~~d~~--------------------------------------~~~~a~~~LG~al~~LG~~~eAl~~l 194 (282)
T 4f3v_A 153 DVIDQVKSAGKWPDKF--------------------------------------LAGAAGVAHGVAAANLALFTEAERRL 194 (282)
T ss_dssp HHHHHHTTGGGCSCHH--------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhccCCcc--------------------------------------cHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999998776542111 00458899999999999999999999
Q ss_pred HHHHhhc--ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH
Q 004336 607 SNALKIR--HT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 655 (760)
Q Consensus 607 ~~Al~~~--~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 655 (760)
++++.-. |. .+++.+|.++..+|+.++|...|++++..+|. ..+...+
T Consensus 195 ~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 195 TEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 9998643 32 78999999999999999999999999999998 7766665
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.50 E-value=4.3e-15 Score=159.98 Aligned_cols=188 Identities=11% Similarity=0.094 Sum_probs=154.6
Q ss_pred HHHhcCCHHHHHHHHHH----HHhhCCCCcchhchHHHHHHHHHHHH------------HccCHHHHHHHHhhhcccccc
Q 004336 392 VRLLRKEYDEAEHLFEA----ILTLSPDYRMFEGRVAASQLHMLVRE------------HIDNWTIADCWLQLYDRWSSV 455 (760)
Q Consensus 392 ~~l~~g~~~eA~~~~~~----aL~l~P~~~~~~~~~~a~~~lg~l~~------------~~g~~~~A~~~l~l~~~~~~~ 455 (760)
++...+.+++|+..++. ++.+.|++. ++. .|.... ..+++++|+..+
T Consensus 74 ~~~~~~~~e~al~~~~~Ge~~~l~i~p~~a--yg~------~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~--------- 136 (336)
T 1p5q_A 74 NLDLPYGLERAIQRMEKGEHSIVYLKPSYA--FGS------VGKEKFQIPPNAELKYELHLKSFEKAKESW--------- 136 (336)
T ss_dssp GGTCCHHHHHHHTTCCTTCEEEEEECTTTT--TTT------TCBGGGTBCSSCCEEEEEEEEEEECCCCGG---------
T ss_pred ccccchHHHHHHhcCCCCCeEEEEECCccc--cCc------CCCCccCCCCCCeEEEEEEEeecccccchh---------
Confidence 33344578888888888 888888863 111 111110 122333333333
Q ss_pred CCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHH
Q 004336 456 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---------------HERLVYEGWILY 520 (760)
Q Consensus 456 ~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---------------~~a~~~Lg~i~~ 520 (760)
.+++..+|.++.+++.+|.++...|++++|+..|++++++.|.+ ..++.++|.++.
T Consensus 137 ---------~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 137 ---------EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp ---------GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777789999999999999999999999999999999999998 699999999999
Q ss_pred HCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHH
Q 004336 521 DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD 600 (760)
Q Consensus 521 ~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~ 600 (760)
.+|++++|+..|+++++++|++ ..+++++|.+|...|+++
T Consensus 208 ~~g~~~~A~~~~~~al~~~p~~----------------------------------------~~a~~~lg~~~~~~g~~~ 247 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELDSNN----------------------------------------EKGLSRRGEAHLAVNDFE 247 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCc----------------------------------------HHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999999 789999999999999999
Q ss_pred HHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHH-HHHHHHHHHhc
Q 004336 601 LAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTA-YEEMTKLIKKA 645 (760)
Q Consensus 601 eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A-~~~l~~al~~~ 645 (760)
+|+..|+++++++|. .++..++.++...|++++| ...|++++...
T Consensus 248 ~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998876 8999999999999999998 55677666543
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.48 E-value=5.9e-14 Score=147.06 Aligned_cols=194 Identities=10% Similarity=-0.017 Sum_probs=137.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
|.++..++.+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--------- 71 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------
Confidence 56788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchH--HHHHHHHHHHHcC
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR--AHQGLARVHFLKN 629 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~--a~~~La~~~~~~g 629 (760)
..+++++|.+|...|++++|+..|+++++.+|.. .+...........
T Consensus 72 -------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 120 (281)
T 2c2l_A 72 -------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (281)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH
Confidence 7888999999999999999999999999876641 1111111111110
Q ss_pred CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 630 NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 630 ~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
+ +...........|.+......++..+ .|++++|++.++++++..
T Consensus 121 ---~------------------------------~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~ 165 (281)
T 2c2l_A 121 ---K------------------------------KKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGH 165 (281)
T ss_dssp ---H------------------------------HHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTT
T ss_pred ---H------------------------------HHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccc
Confidence 0 11111112234455555555555544 567777777777777777
Q ss_pred CCcHHHHHH-HHHH-HHcCCHHHHHHHHHHHHh
Q 004336 710 ADLHLLHLR-AAFH-EHTGDVLGALRDCRAALS 740 (760)
Q Consensus 710 p~~~~~~l~-a~~~-~~~g~~~~A~~~~~~aL~ 740 (760)
|++..+... ..++ ...+.+++|.+.|.++.+
T Consensus 166 p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 166 EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 766544422 2222 223566677777776655
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.48 E-value=5.5e-12 Score=134.59 Aligned_cols=226 Identities=12% Similarity=-0.003 Sum_probs=170.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHhhcCC
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLN-CPEAAMRSLQLARQHAASDHERLVYEGWILYDT-S-HCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g-~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~-g-~~eeAl~~~~~al~l~p~ 541 (760)
.+++..+|++..+|+..+.++...| .+++++..+++++..+|++..+|...++++... + ++++++..++++++.+|.
T Consensus 78 ~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 78 EIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT
T ss_pred HHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999 599999999999999999999999999999998 8 999999999999999999
Q ss_pred h-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhh
Q 004336 542 F-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD--------LAADCYSNALKI 612 (760)
Q Consensus 542 ~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~--------eA~~~~~~Al~~ 612 (760)
+ .+|...+ .+....|.++ +++++++++++.
T Consensus 158 Ny~AW~~R~-----------------------------------------wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 158 NYHTWAYLH-----------------------------------------WLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp CHHHHHHHH-----------------------------------------HHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-----------------------------------------HHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 9 5554444 4444444443 889999999987
Q ss_pred cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 004336 613 RHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 690 (760)
Q Consensus 613 ~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~ 690 (760)
++. .+|...+.+....++... .. ..++++++.+.+++..+|.+..+|+++..++.
T Consensus 197 dp~N~SAW~~R~~lL~~l~~~~~--------------~~---------~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 197 DGRNNSAWGWRWYLRVSRPGAET--------------SS---------RSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp CTTCHHHHHHHHHHHTTSTTCCC--------------CH---------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccc--------------ch---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 766 889999988888775200 00 01356777788888888888888888888887
Q ss_pred HcCCH--------------------HHHHHHHHHHHHcC------CCcH-HHHHHHHHHHHcCCHHHHHHHHHHHH-hcC
Q 004336 691 DSHKE--------------------NEAIAELSRAIAFK------ADLH-LLHLRAAFHEHTGDVLGALRDCRAAL-SVD 742 (760)
Q Consensus 691 ~~g~~--------------------~eAi~~l~kal~~~------p~~~-~~~l~a~~~~~~g~~~~A~~~~~~aL-~l~ 742 (760)
+.|+. .+-.+.....+... +... .+.+.+.+|...|+.++|.+.|+... +.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~d 333 (349)
T 3q7a_A 254 HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYD 333 (349)
T ss_dssp HTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Confidence 77654 11122211221111 1222 33466888888899999999999886 678
Q ss_pred CCcHHHHHHHHH
Q 004336 743 PNDQEMLELHSR 754 (760)
Q Consensus 743 P~~~~~l~~~~r 754 (760)
|-...-++...+
T Consensus 334 pir~~yw~~~~~ 345 (349)
T 3q7a_A 334 QMRAGYWEFRRR 345 (349)
T ss_dssp GGGHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 887777666544
No 137
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.47 E-value=6.1e-14 Score=121.55 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=66.8
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccC--CCCCCccceeEecCCCCCHHHHHHHHhccc-----c---CccC--CC
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSV-----T---GSLN--GV 250 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~--~~~e~~~~~v~~~~~~i~~~~~~~~~~~~y-----t---~~~~--~~ 250 (760)
|+|.. +|++|+|||.+ |++|+||++||++ ++.|+....|.|+ +|++.+|+.|++|+| | +.|+ .|
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~--~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECT--TSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECC--CCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 56664 78999999999 9999999999987 7899999999998 899999999999999 5 7773 28
Q ss_pred ChhhHHHHHHHHhhhCh
Q 004336 251 TPNLLLEILIFANKFCC 267 (760)
Q Consensus 251 ~~~~v~~ll~~a~~~~~ 267 (760)
+++++++||.|||+|+|
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 99999999999999986
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.47 E-value=8.5e-13 Score=138.17 Aligned_cols=172 Identities=13% Similarity=0.065 Sum_probs=131.4
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHH
Q 004336 506 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQA 585 (760)
Q Consensus 506 p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a 585 (760)
|.++..+..+|..++..|++++|+..|++++..+|++ ..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------------------------~~~ 40 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----------------------------------------AVY 40 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----------------------------------------HHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----------------------------------------HHH
Confidence 5678899999999999999999999999999999998 789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHH
Q 004336 586 LNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDREL 663 (760)
Q Consensus 586 ~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 663 (760)
+.++|.+|...|++++|+..|+++++.+|. .+++.+|.++...|++++|+..|+++++..|++...+.
T Consensus 41 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~---------- 110 (281)
T 2c2l_A 41 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG---------- 110 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC----------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH----------
Confidence 999999999999999999999999998776 89999999999999999999999988888773311100
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 664 TRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 664 A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
...+ ... +..++...........|.+..+. ..+.++ .|++++|++.++++++.+
T Consensus 111 ---------------~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~ 165 (281)
T 2c2l_A 111 ---------------DDIP-----SAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGH 165 (281)
T ss_dssp ---------------SHHH-----HHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTT
T ss_pred ---------------HHHH-----HHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccc
Confidence 0111 111 11222222233334555555444 334333 489999999999999999
Q ss_pred CCcHHHHHHH
Q 004336 743 PNDQEMLELH 752 (760)
Q Consensus 743 P~~~~~l~~~ 752 (760)
|++......+
T Consensus 166 p~~~~~~~~l 175 (281)
T 2c2l_A 166 EDDGHIRAQQ 175 (281)
T ss_dssp SCHHHHTHHH
T ss_pred cchhhhhhHH
Confidence 9987654443
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.47 E-value=7.1e-12 Score=133.71 Aligned_cols=253 Identities=11% Similarity=0.018 Sum_probs=190.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc-CHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 471 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g-~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~ 471 (760)
....+..++|+..++++|.++|++. .+++..+.+....| .+++++.++ .+++..+
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~y------taWn~R~~iL~~l~~~l~eEL~~~------------------~~~L~~n 119 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHY------TVWQYRFSLLTSLNKSLEDELRLM------------------NEFAVQN 119 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCCHHHHHHHH------------------HHHHHTT
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhH------HHHHHHHHHHHHhhhhHHHHHHHH------------------HHHHHhC
Confidence 3344566899999999999999995 99999999999999 599999999 9999999
Q ss_pred CCcHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHhhcCC
Q 004336 472 APKGVLYFRQSLLLLRL-N-CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE--------EGLRKAEESIQMKRS 541 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~-g-~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e--------eAl~~~~~al~l~p~ 541 (760)
|++..+|+..+.++... + +++++++.+.++++.+|.+..+|...++++...|.++ ++++.++++++.+|.
T Consensus 120 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 120 LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 99999999999999998 8 9999999999999999999999999999999998888 999999999999999
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhcc
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ-------LDLAADCYSNALKIRH 614 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~-------~~eA~~~~~~Al~~~~ 614 (760)
+ ..+|+..+.++...++ ++++++++++++..+|
T Consensus 200 N----------------------------------------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P 239 (349)
T 3q7a_A 200 N----------------------------------------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP 239 (349)
T ss_dssp C----------------------------------------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred C----------------------------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC
Confidence 9 4555555555555554 7899999999999877
Q ss_pred h--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHH-HHHHhcCCHHHHHHHHHHH--HhhCCCChHHHHHHHHHH
Q 004336 615 T--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY-EKRSEYCDRELTRADLEMV--TQLDPLRVYPYRYRAAVL 689 (760)
Q Consensus 615 ~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~-~~~~~~~~~~~A~~~l~ka--l~l~p~~~~~~~~La~~~ 689 (760)
. .+|+.+..++...|+... .-+...-|..+..- .... .-.+.+....... ...++..+.++..+|.+|
T Consensus 240 ~n~SaW~Ylr~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~ 312 (349)
T 3q7a_A 240 HNVSAWNYLRGFLKHFSLPLV-----PILPAILPYTASKLNPDIE--TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSF 312 (349)
T ss_dssp TCHHHHHHHHHHHHHTTCCSG-----GGHHHHGGGTC----------------CCCCC-CCCSSCCSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcc-----cccccccccccccccccch--hHHHHHHHHHhcccccccCCCcHHHHHHHHHHH
Confidence 7 888888888887775300 00001111000000 0000 0000000000000 012357788999999999
Q ss_pred HHcCCHHHHHHHHHHHH-HcCCCcHHHH
Q 004336 690 MDSHKENEAIAELSRAI-AFKADLHLLH 716 (760)
Q Consensus 690 ~~~g~~~eAi~~l~kal-~~~p~~~~~~ 716 (760)
...|+.++|.+.++... +.+|-...++
T Consensus 313 ~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 313 IEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 99999999999999986 5566655555
No 140
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.46 E-value=3.9e-12 Score=114.68 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 425 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 425 a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
++..+|.++...|++++|..++ .+++..+|.+...++.+|.++...|++++|+..+++++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYY------------------QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHH------------------HHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555566666666666666666 5566666666666666666666666666666666666666
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHH
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 584 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~ 584 (760)
.|.+..++..+|.++...|++++|+..+++++...|.. ..
T Consensus 65 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------~~ 104 (136)
T 2fo7_A 65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----------------------------------------AE 104 (136)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----------------------------------------HH
T ss_pred CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------------------------------hH
Confidence 66666666666666666666666666666666655555 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
++..+|.++...|++++|...|++++..+|
T Consensus 105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 105 AWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 555556666666666666666666555443
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.46 E-value=2.5e-13 Score=127.78 Aligned_cols=117 Identities=7% Similarity=-0.062 Sum_probs=110.4
Q ss_pred HHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHH
Q 004336 402 AEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 481 (760)
Q Consensus 402 A~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~l 481 (760)
+-..|++++.++|++. .+++.+|.++...|++++|+..+ .+++..+|.++.+|+.+
T Consensus 6 ~~~~~~~al~~~p~~~------~~~~~~g~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~l 61 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTL------EQLYSLAFNQYQSGXYEDAHXVF------------------QALCVLDHYDSRFFLGL 61 (148)
T ss_dssp CCCSHHHHTTCCHHHH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHH
T ss_pred hhhhHHHHHcCCHhhH------HHHHHHHHHHHHcCChHHHHHHH------------------HHHHHcCcccHHHHHHH
Confidence 3456888999999885 89999999999999999999999 99999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 482 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 482 a~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
|.++...|++++|+..|++++.++|+++.+++++|.++...|++++|+..|+++++++|++
T Consensus 62 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999999999999999999999999999999999999999999998876
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.46 E-value=5e-12 Score=132.78 Aligned_cols=180 Identities=12% Similarity=0.026 Sum_probs=145.9
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
.....+...+..++..|+|++|+..+++++...|...........++.+|.++...|++++|+.++
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-------------- 138 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILEL-------------- 138 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHH--------------
Confidence 344455667777888889999999999999998876544444456677899999999999999999
Q ss_pred HHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCcH----HHHHHHHHHHHHCCCHHH
Q 004336 461 LSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLAR---QHAASDH----ERLVYEGWILYDTSHCEE 527 (760)
Q Consensus 461 l~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Ai~~l~kal---~~~p~~~----~a~~~Lg~i~~~~g~~ee 527 (760)
.+++...+.. ..+++.+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|..+|++++
T Consensus 139 ----~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 2qfc_A 139 ----KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp ----HHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHH
Confidence 8888765433 6689999999999999999999999999 4556543 689999999999999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHH-HHHH
Q 004336 528 GLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLA-ADCY 606 (760)
Q Consensus 528 Al~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA-~~~~ 606 (760)
|+..+++++.+.++. ......+.+++++|.+|...|++++| ..+|
T Consensus 215 Al~~~~kal~~~~~~----------------------------------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~ 260 (293)
T 2qfc_A 215 SLYQVNKAIEISCRI----------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHHHHHHHT----------------------------------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----------------------------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 999999999764321 00001167899999999999999999 8889
Q ss_pred HHHHhh
Q 004336 607 SNALKI 612 (760)
Q Consensus 607 ~~Al~~ 612 (760)
++|+.+
T Consensus 261 ~~Al~~ 266 (293)
T 2qfc_A 261 KKASFF 266 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.45 E-value=3.4e-12 Score=120.53 Aligned_cols=136 Identities=14% Similarity=0.097 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+..++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~------------ 70 (166)
T 1a17_A 9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA------IYYGNRSLAYLRTECYGYALGDA------------ 70 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCCHHHHHHHH------------
Confidence 345678889999999999999999999999999999995 89999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHCCCHHHHHHHHHHHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG--WILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg--~i~~~~g~~eeAl~~~~~al 536 (760)
.+++..+|.++.+++.+|.++...|++++|+..|+++++.+|.+..++..++ ..+...|++++|+..++++.
T Consensus 71 ------~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 71 ------TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999999999999999999999999999998885554 44888999999999999887
Q ss_pred hh
Q 004336 537 QM 538 (760)
Q Consensus 537 ~l 538 (760)
.+
T Consensus 145 ~~ 146 (166)
T 1a17_A 145 SV 146 (166)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.45 E-value=3.3e-13 Score=139.61 Aligned_cols=199 Identities=11% Similarity=-0.079 Sum_probs=161.1
Q ss_pred HHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHH
Q 004336 428 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ-------SLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 428 ~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~Ai~~l~k 500 (760)
..|.-+ ..+++..|...| .+++..+|+.+++|..+ +.++...++..+++..+++
T Consensus 12 ~~~~~~-~~~d~~~A~~~F------------------~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~ 72 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLF------------------TEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSG 72 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHH
T ss_pred HHHhcc-cCCCHHHHHHHH------------------HHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHH
Confidence 334433 578888999999 99999999999999999 8999999999999999999
Q ss_pred HHHhCCCcH---------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCC
Q 004336 501 ARQHAASDH---------------------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDS 559 (760)
Q Consensus 501 al~~~p~~~---------------------~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~ 559 (760)
.+.+.|... +....++.++...|++++|.+.|+..+...|+.
T Consensus 73 ~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~----------------- 135 (282)
T 4f3v_A 73 SVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH----------------- 135 (282)
T ss_dssp TTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH-----------------
T ss_pred HhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch-----------------
Confidence 999877643 344457888999999999999999888877776
Q ss_pred CcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHH
Q 004336 560 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 560 ~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~ 635 (760)
. +.+.+|.++...++|++|+..|+++.+..++ .+++.+|.++...|++++|+
T Consensus 136 -----------------------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl 191 (282)
T 4f3v_A 136 -----------------------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAE 191 (282)
T ss_dssp -----------------------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHH
Confidence 5 7888899999999999999999988765322 58899999999999987777
Q ss_pred HHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 004336 636 EEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPL-RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL 714 (760)
Q Consensus 636 ~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~-~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~ 714 (760)
..|++++... .+|. .+.+++++|.++.++|+.++|...|++++..+|+ ..
T Consensus 192 ~~l~~a~~g~----------------------------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 192 RRLTEANDSP----------------------------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp HHHHHHHTST----------------------------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred HHHHHHhcCC----------------------------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 7777654211 0133 3456778899999999999999999999999988 54
Q ss_pred H
Q 004336 715 L 715 (760)
Q Consensus 715 ~ 715 (760)
+
T Consensus 243 ~ 243 (282)
T 4f3v_A 243 V 243 (282)
T ss_dssp H
T ss_pred H
Confidence 4
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.44 E-value=6.5e-13 Score=124.94 Aligned_cols=112 Identities=11% Similarity=-0.040 Sum_probs=105.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
+++++..+|++..+++.+|..+...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~- 88 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE- 88 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+.+++++|.+|...|++++|+.+|+++++..|.
T Consensus 89 ---------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 89 ---------------------------------------PRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp ---------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 788899999999999999999999999987554
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.44 E-value=1.6e-13 Score=147.59 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+.+++.+|.+++..|+|++|+..|++++.++|++..+..
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------------------------------- 185 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------------------------------- 185 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-------------------------------------
Confidence 5677899999999999999999999999999999988852110
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.......|....+++++|.+|..+|++++|+..|+++++++|++..+++++|.++..+|++++|+..|++++++
T Consensus 186 ------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 186 ------EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 12222234457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 004336 539 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLA-ADCYSNALK 611 (760)
Q Consensus 539 ~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA-~~~~~~Al~ 611 (760)
+|++ ..++.++|.++...|++++| ...|++++.
T Consensus 260 ~P~~----------------------------------------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 260 YPNN----------------------------------------KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CSSC----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 66777777778778888777 446666554
No 147
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.44 E-value=2.6e-12 Score=127.34 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=125.2
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+..++.+|..++..|++++|+..|++++ +| + ..++..+|.++...|++++|+.++
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~------~~~~~~lg~~~~~~g~~~~A~~~~-------------- 60 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-H------SRICFNIGCMYTILKNMTEAEKAF-------------- 60 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C------HHHHHHHHHHHHHTTCHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C------hHHHHHHHHHHHHcCCHHHHHHHH--------------
Confidence 355667888999999999999999999995 44 3 379999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHCCC
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH----------------ERLVYEGWILYDTSH 524 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~----------------~a~~~Lg~i~~~~g~ 524 (760)
.+++..+|.++.+++++|.++...|++++|+..|+++++..|.+. .+++++|.++...|+
T Consensus 61 ----~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (213)
T 1hh8_A 61 ----TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136 (213)
T ss_dssp ----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999888766 999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCh
Q 004336 525 CEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 525 ~eeAl~~~~~al~l~p~~ 542 (760)
+++|+..|+++++++|+.
T Consensus 137 ~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 137 WKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHcCccc
Confidence 999999999999999987
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.42 E-value=8.2e-13 Score=122.92 Aligned_cols=113 Identities=11% Similarity=-0.024 Sum_probs=103.4
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+.+++..+|++...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 35778888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 543 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 543 ~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+.+++++|.+|...|++++|+.+|+++++..|.
T Consensus 86 ----------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 86 ----------------------------------------PRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp ----------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred ----------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 788899999999999999999999999987654
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.41 E-value=9.1e-13 Score=122.62 Aligned_cols=115 Identities=9% Similarity=-0.038 Sum_probs=104.3
Q ss_pred HHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHH
Q 004336 404 HLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL 483 (760)
Q Consensus 404 ~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~ 483 (760)
..|++++..+|++. .+++.+|..+...|++++|+.++ .+++..+|.++.+|+.+|.
T Consensus 5 ~~l~~al~~~p~~~------~~~~~~a~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~lg~ 60 (142)
T 2xcb_A 5 GTLAMLRGLSEDTL------EQLYALGFNQYQAGKWDDAQKIF------------------QALCMLDHYDARYFLGLGA 60 (142)
T ss_dssp ----CCTTCCHHHH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHcCCHHHH------HHHHHHHHHHHHHccHHHHHHHH------------------HHHHHhCCccHHHHHHHHH
Confidence 46778888888884 88899999999999999999999 9999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
++...|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus 61 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999998876
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=5.3e-12 Score=114.33 Aligned_cols=115 Identities=10% Similarity=0.002 Sum_probs=104.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
|..+..++.+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--------- 71 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc------ch--HHHHHHHH
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR------HT--RAHQGLAR 623 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~------~~--~a~~~La~ 623 (760)
..++..+|.++...|++++|+..|+++++.+ |. .++..++.
T Consensus 72 -------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 72 -------------------------------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 7889999999999999999999999999987 54 56666665
Q ss_pred HHH
Q 004336 624 VHF 626 (760)
Q Consensus 624 ~~~ 626 (760)
+..
T Consensus 121 ~~~ 123 (126)
T 3upv_A 121 ASQ 123 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.40 E-value=1.8e-12 Score=118.39 Aligned_cols=109 Identities=13% Similarity=0.128 Sum_probs=97.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 551 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~ 551 (760)
+.+.++.++|..+.+.|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++ ..+..+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--- 82 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI--- 82 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH---
Confidence 3466788999999999999999999999999999999999999999999999999999999999998876 222221
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+.++.++|.++...|++++|+.+|+++++..|+
T Consensus 83 -------------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -------------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 567888999999999999999999999987665
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.40 E-value=1.8e-12 Score=124.92 Aligned_cols=126 Identities=6% Similarity=0.001 Sum_probs=116.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
+...|++++|+..|++++..+|++. .++..+|.++...|++++|+.++ .+++..+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~~A~~~~------------------~~al~~~p 75 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNS------EQWALLGEYYLWQNDYSNSLLAY------------------RQALQLRG 75 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHcCC
Confidence 3456699999999999999999995 89999999999999999999999 99999999
Q ss_pred CcHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 473 PKGVLYFRQSLL-LLRLNCP--EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 473 ~~~~~~~~la~~-~~~~g~~--~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.++.+++.+|.+ +...|++ ++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999 8899999 999999999999999999999999999999999999999999999999988
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.39 E-value=8.1e-12 Score=113.10 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=64.7
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..+...|..++..|+|++|+..|++++..+|+++ .++..+|.++...|++++|+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~---------------- 61 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA------RGYSNRAAALAKLMSFPEAIADC---------------- 61 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhcCHHHHHHHH----------------
Confidence 44455555555555566666666666666666653 55555555555555555555555
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA------ASDHERLVYEGWIL 519 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~------p~~~~a~~~Lg~i~ 519 (760)
.+++..+|+++.+++.+|.++...|++++|+..|+++++++ |.+..++..++.+.
T Consensus 62 --~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 62 --NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp --HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred --HHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555 55555555554443
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.37 E-value=2.1e-11 Score=115.08 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 422 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 501 (760)
Q Consensus 422 ~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~ka 501 (760)
....+..+|..+...|++++|+.++ .+++..+|.+..+++.+|.++...|++++|+..++++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~------------------~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFY------------------SQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHH------------------HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3577889999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc
Q 004336 502 RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 581 (760)
Q Consensus 502 l~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~ 581 (760)
++.+|.+..+++.+|.++...|++++|+..|++++..+|++
T Consensus 74 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--------------------------------------- 114 (166)
T 1a17_A 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD--------------------------------------- 114 (166)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------------------------------
T ss_pred HHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------------------------------
Confidence 99999999999999999999999999999999999999988
Q ss_pred HHHHH--HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 582 KGQAL--NNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 582 ~~~a~--~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..++ ..++..+...|++++|+..+.++..
T Consensus 115 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 115 -KDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 2333 3344446667788888888877654
No 155
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.37 E-value=1.2e-11 Score=129.75 Aligned_cols=173 Identities=12% Similarity=0.006 Sum_probs=137.1
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
.....++..|+|++|+..+++++...+..+........+..+|.++...+++++|+.++ +++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~------------------~~a 141 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILEL------------------KKL 141 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH------------------HHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHH------------------HHH
Confidence 34455666779999999999999988877643322234456899998899999999999 888
Q ss_pred HHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 468 LESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQH-------AASDHERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 468 l~~~p~~------~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
+...+.. ..++.++|.+|...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+..+++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 142 LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8864332 347899999999999999999999999953 123346889999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Q 004336 535 SIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG-QLDLAADCYSNALKI 612 (760)
Q Consensus 535 al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g-~~~eA~~~~~~Al~~ 612 (760)
++++.+... .....+.+++++|.+|...| .+++|+.+|++|+.+
T Consensus 222 al~~~~~~~----------------------------------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 222 AIEISCRIN----------------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTT----------------------------------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC----------------------------------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 998754330 00011688999999999999 579999999999874
No 156
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=1e-09 Score=127.98 Aligned_cols=351 Identities=8% Similarity=-0.049 Sum_probs=240.3
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC---HHHHHHHHhhhccccccCC
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN---WTIADCWLQLYDRWSSVDD 457 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~---~~~A~~~l~l~~~~~~~~d 457 (760)
.....|..+.......+.++.+...|++++...|... ..|..........++ ++.+..++
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~------~lW~~Yi~~E~~~~~~~~~~~v~~lf----------- 126 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA------NIWCMRLSLEFDKMEELDAAVIEPVL----------- 126 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHTC--CCCHHHHHHHH-----------
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHhhCCcchHHHHHHHH-----------
Confidence 3445566666666667899999999999999999996 666666666777788 99999988
Q ss_pred cCcHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCH----HH----HHHHHHHHHHh----CCCcHHHHHHHHHHHH---
Q 004336 458 IGSLSVIYQMLESDA--PKGVLYFRQSLLLLRLNCP----EA----AMRSLQLARQH----AASDHERLVYEGWILY--- 520 (760)
Q Consensus 458 ~~sl~~~~~al~~~p--~~~~~~~~la~~~~~~g~~----~~----Ai~~l~kal~~----~p~~~~a~~~Lg~i~~--- 520 (760)
++++...| .+..+|........+.++. ++ ..+.|++|+.. ++.....|........
T Consensus 127 -------eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 127 -------ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp -------HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred -------HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 89998884 6778888877766665554 33 34788888764 5666677766554433
Q ss_pred ------HCCCHHHHHHHHHHHHhhcCCh---HHHH---HH----------------------HHH-HHc-----ccCC--
Q 004336 521 ------DTSHCEEGLRKAEESIQMKRSF---EAFF---LK----------------------AYA-LAD-----SSQD-- 558 (760)
Q Consensus 521 ------~~g~~eeAl~~~~~al~l~p~~---~a~~---~l----------------------a~~-l~~-----~~~~-- 558 (760)
.+++.+.+...|++++.+ |.. ..|. .. +.. +.. ..++
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 344577888999999874 432 1111 00 000 000 0000
Q ss_pred -CCc---------------chhhhhH--------------------HHHHHhhhHhhccH----HHHHHHHHHHHHHcCC
Q 004336 559 -SSC---------------SSTVVSL--------------------LEDALKCPSDRLRK----GQALNNLGSVYVDCGQ 598 (760)
Q Consensus 559 -~~~---------------~~~~~~~--------------------leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~ 598 (760)
+.. ....+.. .+.....|++++.. ...|...+..+...|+
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 000 0011111 12223345555333 7889999999999999
Q ss_pred HHHHH-HHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------cC-----------cHHHHH
Q 004336 599 LDLAA-DCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKA-----------RN-----------NASAYE 653 (760)
Q Consensus 599 ~~eA~-~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~-----------~~-----------~~~~~~ 653 (760)
.++|. ..|++|+...|. ..+..++......|+++.|...|++++... |. ...++.
T Consensus 359 ~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 99997 999999987665 667888999999999999999999998752 31 222333
Q ss_pred HHH----hcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcC
Q 004336 654 KRS----EYCDRELTRADLEMVTQL-DPLRVYPYRYRAAVLMDSHK-ENEAIAELSRAIAFKADLHLLHLR-AAFHEHTG 726 (760)
Q Consensus 654 ~~~----~~~~~~~A~~~l~kal~l-~p~~~~~~~~La~~~~~~g~-~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g 726 (760)
... ..+..+.|...|.+|++. .+.....|...|.+....++ .+.|...|+++++..|+++.+++. +.+....|
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 322 346788999999999887 54556777777777666654 899999999999999998888744 66777779
Q ss_pred CHHHHHHHHHHHHhcCCC---cHHHHHHHHHhh
Q 004336 727 DVLGALRDCRAALSVDPN---DQEMLELHSRVY 756 (760)
Q Consensus 727 ~~~~A~~~~~~aL~l~P~---~~~~l~~~~r~~ 756 (760)
+.+.|...|++++...|+ ...++..+.+..
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999998873 445555555543
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.36 E-value=1.3e-11 Score=111.71 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=113.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 471 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 471 ~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
.|.+..+++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-------- 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--------
Confidence 477889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHc
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLK 628 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~ 628 (760)
..++..+|.++...|++++|+.+|+++++.+|. .++..++.++...
T Consensus 84 --------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 84 --------------------------------IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred --------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 788999999999999999999999999998776 8899999999887
Q ss_pred CC
Q 004336 629 NN 630 (760)
Q Consensus 629 g~ 630 (760)
|+
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 74
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.36 E-value=1.8e-11 Score=109.91 Aligned_cols=123 Identities=14% Similarity=0.058 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+..++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~------------ 69 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA------VYFCNRAAAYSKLGNYAGAVQDC------------ 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhhchHHHHHHH------------
Confidence 445677788888899999999999999999999999885 88899999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 525 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~ 525 (760)
.+++..+|.++.+++.+|.++...|++++|+..|+++++..|++..++..+|.++...|++
T Consensus 70 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 70 ------ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999888875
No 159
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.36 E-value=6e-11 Score=124.46 Aligned_cols=169 Identities=7% Similarity=-0.071 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG------VLYFRQSLLLLRLNCPEAAMRS 497 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~Ai~~ 497 (760)
..+...+..+...|++++|...+ .+++...+... ..++.+|.++...|++++|+..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 137 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKV------------------WNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILE 137 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH------------------HHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 45556777888999999999999 88888776543 3466788999999999999999
Q ss_pred HHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---cCChHHHHHHHHHHHcccCCCCcchhhhhH
Q 004336 498 LQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQM---KRSFEAFFLKAYALADSSQDSSCSSTVVSL 568 (760)
Q Consensus 498 l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l---~p~~~a~~~la~~l~~~~~~~~~~~~~~~~ 568 (760)
|+++++..+.. ..++.++|.+|...|++++|+..|++++++ .|+.. .
T Consensus 138 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~------------------------~ 193 (293)
T 2qfc_A 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE------------------------E 193 (293)
T ss_dssp HHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH------------------------H
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc------------------------c
Confidence 99999875543 568999999999999999999999999943 34330 0
Q ss_pred HHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--------hHHHHHHHHHHHHcCCHHHH-HHHHH
Q 004336 569 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--------TRAHQGLARVHFLKNNKTTA-YEEMT 639 (760)
Q Consensus 569 leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~--------~~a~~~La~~~~~~g~~~~A-~~~l~ 639 (760)
. ...+++++|.+|...|+|++|+.+|++++++.+ ..+++++|.+|...|++++| ...++
T Consensus 194 ~------------~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 194 F------------DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp H------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred c------------hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 0 036889999999999999999999999998533 27899999999999999999 77899
Q ss_pred HHHHhcc
Q 004336 640 KLIKKAR 646 (760)
Q Consensus 640 ~al~~~~ 646 (760)
+++....
T Consensus 262 ~Al~~~~ 268 (293)
T 2qfc_A 262 KASFFFD 268 (293)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 160
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.36 E-value=2.5e-11 Score=120.09 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..++.+|..+...|++++|+..+ .+++ +| ++.+++.+|.++...|++++|+..|+++++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~------------------~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 65 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAF------------------SAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSIN 65 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH------------------HHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778999999999999999999 6664 33 788999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH--HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE--AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 581 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~--a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~ 581 (760)
.+|.+..++..+|.++...|++++|+..|+++++..|.+. .+..++. .....
T Consensus 66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------------------~~~~~ 119 (213)
T 1hh8_A 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL--------------------------QFKLF 119 (213)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB--------------------------CCEEE
T ss_pred hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc--------------------------ccCcc
Confidence 9999999999999999999999999999999999988760 0000000 00011
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 582 KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 582 ~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
...+++++|.++...|++++|+..|+++++..|.
T Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 120 ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred chHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 2688999999999999999999999999998775
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.35 E-value=1.7e-11 Score=120.04 Aligned_cols=168 Identities=17% Similarity=0.098 Sum_probs=127.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchh
Q 004336 485 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 564 (760)
Q Consensus 485 ~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~ 564 (760)
++..|++++|.+.++......+....++..+|.++...|++++|+..+++++.+....
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------- 59 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---------------------- 59 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----------------------
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc----------------------
Confidence 3568999999996665555444678899999999999999999999999998753222
Q ss_pred hhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------cch---HHHHHHHHHHHHcCCHHHHH
Q 004336 565 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI------RHT---RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~------~~~---~a~~~La~~~~~~g~~~~A~ 635 (760)
+.. .....++.++|.++...|++++|+.+|+++++. ++. .++.++|.++...|++++|.
T Consensus 60 --~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 127 (203)
T 3gw4_A 60 --GDH----------TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR 127 (203)
T ss_dssp --CCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred --CCc----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 000 001678899999999999999999999999986 331 67899999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 636 EEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 636 ~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
..++++++..+..+.... ...++..+|.++...|++++|+..+++++.+..
T Consensus 128 ~~~~~al~~~~~~~~~~~------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 128 QEYEKSLVYAQQADDQVA------------------------IACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHTTCHHH------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHH------------------------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999988876442111110 123467889999999999999999999987643
No 162
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=2.9e-12 Score=147.31 Aligned_cols=191 Identities=9% Similarity=0.002 Sum_probs=143.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC--CHHHHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNC----------PEAAMRSLQLARQHAASDHERLVYEGWILYDTS--HCEEGLRKA 532 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~----------~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g--~~eeAl~~~ 532 (760)
.+++..+|++..+|+..+.++...|+ +++|++.++++++.+|++..+|+..++++...| ++++|+..+
T Consensus 53 ~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~ 132 (567)
T 1dce_A 53 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 132 (567)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 44444444444555555555555554 788889999999999999999999999999888 669999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 004336 533 EESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG-QLDLAADCYSNALK 611 (760)
Q Consensus 533 ~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g-~~~eA~~~~~~Al~ 611 (760)
+++++.+|.+ ..+|+..|.+....| .++++++++.++++
T Consensus 133 ~k~l~~d~~N----------------------------------------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 133 ARFLEADERN----------------------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp HHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHhhcccc----------------------------------------ccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999888 677777788887888 88889999999888
Q ss_pred hcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 004336 612 IRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVL 689 (760)
Q Consensus 612 ~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~ 689 (760)
.+|. .+|..++.++...++..++. ..+ ....+.++++++.+.+|+.++|++..+|++++.++
T Consensus 173 ~~p~n~saW~~r~~ll~~l~~~~~~~-----------~~~-----~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 173 RNFSNYSSWHYRSCLLPQLHPQPDSG-----------PQG-----RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSS-----------SCC-----SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HCCCCccHHHHHHHHHHhhccccccc-----------ccc-----cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 7766 88888888887764331100 000 00012357889999999999999999999999999
Q ss_pred HHcCCHHH------------HHHHHHHHHHcCCC
Q 004336 690 MDSHKENE------------AIAELSRAIAFKAD 711 (760)
Q Consensus 690 ~~~g~~~e------------Ai~~l~kal~~~p~ 711 (760)
...+++++ |+..|.+++..+|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 237 GRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp SCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred hcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 99998766 56667777776665
No 163
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.34 E-value=1.8e-10 Score=120.64 Aligned_cols=245 Identities=6% Similarity=-0.062 Sum_probs=172.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH---------HHHHHHhhhccccccCCcCcHHHHHH
Q 004336 396 RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT---------IADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~---------~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
.|.|..++. .+-+..|.++ ......+...+..+|++. .|...+..+.. .+++..+++
T Consensus 26 ~G~yq~~i~---e~~~~~~~~~-----~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~------~~a~~~l~~ 91 (310)
T 3mv2_B 26 TGNFVQCLQ---EIEKFSKVTD-----NTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLD------TKNIEELEN 91 (310)
T ss_dssp TTCHHHHTH---HHHTSSCCCC-----HHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHT------TTCCHHHHH
T ss_pred hhHHHHHHH---HHHhcCccch-----HHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhc------ccHHHHHHH
Confidence 349999987 3445667665 345566667777777764 24343322221 124566677
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC---
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA--SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--- 541 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p--~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~--- 541 (760)
.+...+.....++.+|.++...|++++|++.+.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+
T Consensus 92 l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~ 171 (310)
T 3mv2_B 92 LLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS 171 (310)
T ss_dssp TTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc
Confidence 7766666677778899999999999999999999988886 78888999999999999999999999998888883
Q ss_pred --hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcch--
Q 004336 542 --FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG--QLDLAADCYSNALKIRHT-- 615 (760)
Q Consensus 542 --~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g--~~~eA~~~~~~Al~~~~~-- 615 (760)
+. ......-|.+.+..| ++.+|...|+++....|.
T Consensus 172 ~~d~---------------------------------------~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~ 212 (310)
T 3mv2_B 172 GDNE---------------------------------------MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK 212 (310)
T ss_dssp HHHH---------------------------------------HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred cchH---------------------------------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence 21 112222233344445 999999999998886663
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~ 695 (760)
.....+. ++..+|++++|...++.+++.+|.... ---.+|+++.++.+++.+....|+
T Consensus 213 ~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~--------------------k~~~~p~~~~~LaN~i~l~~~lgk- 270 (310)
T 3mv2_B 213 TQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQ--------------------KENAVLYKPTFLANQITLALMQGL- 270 (310)
T ss_dssp HHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTT--------------------CHHHHSSHHHHHHHHHHHHHHTTC-
T ss_pred cHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccc--------------------cccCCCCCHHHHHHHHHHHHHhCh-
Confidence 2222222 899999998888888866665441000 000146777788788888888887
Q ss_pred HHHHHHHHHHHHcCCCcHHHH
Q 004336 696 NEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~~~~ 716 (760)
+|.++++++.+..|+++.+.
T Consensus 271 -~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 271 -DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp -TTHHHHHHHHHTTCCCHHHH
T ss_pred -HHHHHHHHHHHhCCCChHHH
Confidence 88899999999999988664
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.34 E-value=2.2e-11 Score=115.86 Aligned_cols=114 Identities=10% Similarity=-0.013 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
...+..+|.++...|++++|+.++ .+++..+|+++.+++++|.+|...|++++|+..|++++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 72 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLY------------------TQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT 72 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 578999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHc
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALAD 554 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~ 554 (760)
+++|++..+++.+|.++..+|++++|+..|+++++++|++ .+++..+.....
T Consensus 73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 766666554433
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.33 E-value=1.7e-11 Score=116.76 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=107.5
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+..++.+|.+++..|+|++|+..|++++.++|++. .++..+|.++...|++++|+.++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~-------------- 68 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP------IYLSNRAAAYSASGQHEKAAEDA-------------- 68 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHTTCHHHHHHHH--------------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH------HHHHHHHHHHHHccCHHHHHHHH--------------
Confidence 4567788999999999999999999999999999995 89999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 519 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~ 519 (760)
++++..+|++..+++++|.+|...|++++|+..|+++++++|++..+++..+...
T Consensus 69 ----~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 69 ----ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp ----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred ----HHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988777766543
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.33 E-value=1.7e-11 Score=110.10 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=113.9
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
.+|.++..++.+|..+...|++++|+..|++++...|++..++..+|.++...|++++|+..+++++...|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------- 79 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY------- 79 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-------
Confidence 3466788999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 627 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~ 627 (760)
..++..+|.++...|++++|+.+|+++++..|. .++..++.++..
T Consensus 80 ---------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 80 ---------------------------------SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 788899999999999999999999999998775 889999999999
Q ss_pred cCCH
Q 004336 628 KNNK 631 (760)
Q Consensus 628 ~g~~ 631 (760)
.|++
T Consensus 127 ~~~~ 130 (131)
T 2vyi_A 127 LREA 130 (131)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 8875
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.33 E-value=2.3e-11 Score=111.05 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
..+.|.++..+|..++.+|+|++|+..|++++.++|++. .++..+|.++...|++++|+..+
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~------~~~~nlg~~~~~~~~~~~A~~~~------------ 65 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI------TFYNNKAAVYFEEKKFAECVQFC------------ 65 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHhHHHHHHHhhhHHHHHHHH------------
Confidence 356788899999999999999999999999999999995 89999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004336 459 GSLSVIYQMLESDAPK-------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 507 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~ 507 (760)
.+++..+|++ +.+++++|.++...|++++|++.|++++...|+
T Consensus 66 ------~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 66 ------EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ------HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 9999888765 356777888888888888888888888877764
No 168
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.32 E-value=1.9e-11 Score=110.62 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=75.8
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
..+++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~---------------- 73 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA------KLYSNRAACYTKLLEFQLALKDC---------------- 73 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH------HHHHHHHHHHTTTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHhccHHHHHHHH----------------
Confidence 34455556666666666666666666666666663 56666666666666666666666
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 523 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g 523 (760)
++++..+|.+..+++.+|.++...|++++|+..|+++++.+|.+..++..++.++..+|
T Consensus 74 --~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 74 --EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp --HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred --HHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666554
No 169
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=2.4e-09 Score=124.96 Aligned_cols=218 Identities=10% Similarity=-0.026 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHH-hhhHhhccH----HHHHHHHHHHHHHcCCHH
Q 004336 527 EGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDAL-KCPSDRLRK----GQALNNLGSVYVDCGQLD 600 (760)
Q Consensus 527 eAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl-~~~~~~l~~----~~a~~~Lg~~y~~~g~~~ 600 (760)
.....|++++...|.+ +.|+..+..+... +..++|. +.+++++.. ...|..++......|+++
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~-----------~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEK-----------NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----------SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence 3567899999999998 8999998887776 3334443 555555322 667888999999999999
Q ss_pred HHHHHHHHHHhhc-----------c-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccCcHHHHHHH
Q 004336 601 LAADCYSNALKIR-----------H-------------TRAHQGLARVHFLKNNKTTAYEEMTKLIKK-ARNNASAYEKR 655 (760)
Q Consensus 601 eA~~~~~~Al~~~-----------~-------------~~a~~~La~~~~~~g~~~~A~~~l~~al~~-~~~~~~~~~~~ 655 (760)
+|...|++++..- | ..+|...+.+..+.|+.+.|...|.++++. .+....+|...
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 9999999999731 2 147888888888999999999999999988 33333344332
Q ss_pred H----h-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHH-HHHHHHcC
Q 004336 656 S----E-YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD---LHLLHLR-AAFHEHTG 726 (760)
Q Consensus 656 ~----~-~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~---~~~~~l~-a~~~~~~g 726 (760)
+ . .++.+.|...|+.+++..|+++..|...+......|+.+.|...|++++...|+ ...++.. ..+-...|
T Consensus 476 A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 476 AYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 1 1 245899999999999999999999988999999999999999999999998884 3345533 66667779
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 727 DVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 727 ~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
+.+.+...++++.+..|+++.+-.+..|.
T Consensus 556 ~~~~~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 556 SLNSVRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp CSHHHHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 99999999999999999988776666554
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.32 E-value=7.6e-11 Score=115.30 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=127.4
Q ss_pred HHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCC
Q 004336 434 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ------HAAS 507 (760)
Q Consensus 434 ~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~------~~p~ 507 (760)
...|++++|...+ +......+..+.++..+|.++...|++++|+..+++++. ..|.
T Consensus 3 ~~~g~~~~A~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 64 (203)
T 3gw4_A 3 FEAHDYALAERQA------------------QALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64 (203)
T ss_dssp ----CHHHHHHHH------------------HHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred cccccHHHHHHHH------------------HHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH
Confidence 4578888888855 333332236788999999999999999999999999998 3455
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHH
Q 004336 508 DHERLVYEGWILYDTSHCEEGLRKAEESIQM---KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 584 (760)
Q Consensus 508 ~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l---~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~ 584 (760)
...++.++|.++...|++++|+..+++++.+ .++.. .....
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------------~~~~~ 108 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP------------------------------------LAASA 108 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH------------------------------------HHHHH
Confidence 6778999999999999999999999999976 22110 00157
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc----h----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRH----T----RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~----~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
++.++|.++...|++++|+.+++++++..+ . .++..+|.++...|++++|...++++++...
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999997421 1 5678999999999999999999999988765
No 171
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.31 E-value=1.9e-11 Score=117.59 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=90.5
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHCCCH--HHHHHHHHHHHhhcCC
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHC--EEGLRKAEESIQMKRS 541 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i-~~~~g~~--eeAl~~~~~al~l~p~ 541 (760)
.+++..+|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+ +...|++ ++|+..++++++.+|+
T Consensus 34 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~ 113 (177)
T 2e2e_A 34 QDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN 113 (177)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence 788888888888888888888888888888888888888888888888888888 6778887 8888888888888887
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+ ..++..+|.+|...|++++|+..|+++++..|.
T Consensus 114 ~----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 114 E----------------------------------------ITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp C----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred c----------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 7 667777888888888888888888888877665
No 172
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.31 E-value=7.3e-11 Score=123.83 Aligned_cols=166 Identities=7% Similarity=-0.081 Sum_probs=135.3
Q ss_pred HHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 427 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV------LYFRQSLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 427 ~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~Ai~~l~k 500 (760)
...+..+...|++++|...+ ++++...+..+. .+..+|.++...|++++|+..|++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~------------------~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~ 140 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKV------------------WNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKK 140 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHH------------------HHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH------------------HHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 33466778899999999999 888887766554 233588899999999999999999
Q ss_pred HHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHcccCCCCcchhhhhHHHH
Q 004336 501 ARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKR---SFEAFFLKAYALADSSQDSSCSSTVVSLLED 571 (760)
Q Consensus 501 al~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p---~~~a~~~la~~l~~~~~~~~~~~~~~~~lee 571 (760)
++...+.. ..++.++|.+|...|++++|+..|+++++... .+
T Consensus 141 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------- 191 (293)
T 3u3w_A 141 LLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN----------------------------- 191 (293)
T ss_dssp HHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC-----------------------------
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-----------------------------
Confidence 99965432 34789999999999999999999999995321 11
Q ss_pred HHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--------hHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 004336 572 ALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--------TRAHQGLARVHFLKN-NKTTAYEEMTKLI 642 (760)
Q Consensus 572 Al~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~--------~~a~~~La~~~~~~g-~~~~A~~~l~~al 642 (760)
......+++++|.+|...|+|++|+.++++++++.+ ..+++++|.+|...| ++++|+..+++++
T Consensus 192 -------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 192 -------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred -------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 000167899999999999999999999999998532 278999999999999 4799999999998
Q ss_pred Hhcc
Q 004336 643 KKAR 646 (760)
Q Consensus 643 ~~~~ 646 (760)
....
T Consensus 265 ~i~~ 268 (293)
T 3u3w_A 265 FFFD 268 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.31 E-value=3.6e-11 Score=118.20 Aligned_cols=140 Identities=9% Similarity=0.018 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhch----------HHHHHHHHHHHHHccCHHHHHHHHhh
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGR----------VAASQLHMLVREHIDNWTIADCWLQL 448 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~----------~~a~~~lg~l~~~~g~~~~A~~~l~l 448 (760)
....+..+..+|..++..|+|++|+..|++++...|+++..... ..++..+|.++...|++++|+.++
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~-- 111 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA-- 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH--
Confidence 34567778888999999999999999999999999887532221 267888999999999999999999
Q ss_pred hccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Q 004336 449 YDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 449 ~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeA 528 (760)
.+++..+|.+..+++.+|.++...|++++|+..|+++++++|++..++..++.++...++.+++
T Consensus 112 ----------------~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 112 ----------------SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp ----------------HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred ----------------HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888877
Q ss_pred H-HHHHHHH
Q 004336 529 L-RKAEESI 536 (760)
Q Consensus 529 l-~~~~~al 536 (760)
. ..|.+.+
T Consensus 176 ~~~~~~~~f 184 (198)
T 2fbn_A 176 DKLTFGGMF 184 (198)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 6 4444433
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.30 E-value=3.8e-12 Score=125.33 Aligned_cols=131 Identities=9% Similarity=0.019 Sum_probs=109.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 471 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH----------------ERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 471 ~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~----------------~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
.+..+..+..+|..+...|++++|+..|++++...|.++ .++.++|.++...|++++|+..+++
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 345567888999999999999999999999999988876 8899999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 535 SIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 535 al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
++.++|++ ..+++.+|.+|...|++++|+..|+++++.+|
T Consensus 114 al~~~p~~----------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 114 VLKIDKNN----------------------------------------VKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHSTTC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHhCccc----------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 99999988 78888999999999999999999999998776
Q ss_pred h--HHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 004336 615 T--RAHQGLARVHFLKNNKTTAY-EEMTKL 641 (760)
Q Consensus 615 ~--~a~~~La~~~~~~g~~~~A~-~~l~~a 641 (760)
. .++..++.++...++..++. ..+.++
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC---------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 78888999988888777666 344433
No 175
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=1.2e-10 Score=134.02 Aligned_cols=185 Identities=13% Similarity=0.057 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC----------HHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN----------WTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~----------~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
..++|+..+++++..+|++. .+|+..+.+....|+ +++++.++ .++
T Consensus 44 ~~eeal~~~~~~l~~nP~~~------taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~------------------~~~ 99 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFA------TLWNCRREVLQHLETEKSPEESAALVKAELGFL------------------ESC 99 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH------------------HHH
T ss_pred CCHHHHHHHHHHHHHCchhH------HHHHHHHHHHHhcccccchhhhhhhHHHHHHHH------------------HHH
Confidence 44788999999999999995 999999999999988 89999998 999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhcCCh-H
Q 004336 468 LESDAPKGVLYFRQSLLLLRLN--CPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKRSF-E 543 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g--~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g-~~eeAl~~~~~al~l~p~~-~ 543 (760)
+..+|++..+|+..+.++.+.| ++++|++.+.++++.+|.+..+|.+.++++...| .+++++++++++++.+|++ .
T Consensus 100 l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s 179 (567)
T 1dce_A 100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179 (567)
T ss_dssp HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999 7799999999999999999999999999999999 9999999999999999999 5
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGL 621 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~L 621 (760)
+|...+.++............ | -...+.+++|++++.+|+..+|. .+|+.+
T Consensus 180 aW~~r~~ll~~l~~~~~~~~~-------------------------~--~~~~~~~~eel~~~~~ai~~~P~~~saW~y~ 232 (567)
T 1dce_A 180 SWHYRSCLLPQLHPQPDSGPQ-------------------------G--RLPENVLLKELELVQNAFFTDPNDQSAWFYH 232 (567)
T ss_dssp HHHHHHHHHHHHSCCCCSSSC-------------------------C--SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred HHHHHHHHHHhhccccccccc-------------------------c--cccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 555555554442100000000 0 00125689999999999998877 899999
Q ss_pred HHHHHHcCCHHH
Q 004336 622 ARVHFLKNNKTT 633 (760)
Q Consensus 622 a~~~~~~g~~~~ 633 (760)
+.++...+++.+
T Consensus 233 ~~ll~~~~~~~~ 244 (567)
T 1dce_A 233 RWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCCSC
T ss_pred HHHHhcCCCccc
Confidence 999998888554
No 176
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.29 E-value=6.7e-11 Score=108.15 Aligned_cols=106 Identities=12% Similarity=0.020 Sum_probs=98.7
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
.+|.++..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------- 76 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------- 76 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-------
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
..+++.+|.++...|++++|+..|+++++..|.
T Consensus 77 ---------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 ---------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 788999999999999999999999999986554
No 177
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.28 E-value=1.3e-10 Score=103.35 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=107.4
Q ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 471 DAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 471 ~p~~-~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
+|.. ...++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------- 76 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------- 76 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------
Confidence 4544 78899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 627 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~ 627 (760)
..++..+|.++...|++++|+..|+++++.+|. .++..++.++..
T Consensus 77 ---------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 77 ---------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 678889999999999999999999999997766 788888888876
Q ss_pred cC
Q 004336 628 KN 629 (760)
Q Consensus 628 ~g 629 (760)
.|
T Consensus 124 ~g 125 (125)
T 1na0_A 124 QG 125 (125)
T ss_dssp HC
T ss_pred cc
Confidence 54
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.27 E-value=2.9e-11 Score=109.35 Aligned_cols=101 Identities=10% Similarity=-0.017 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..++.+|..+...|++++|+..+ ++++..+|+++.+|+.+|.++...|++++|+..|+++++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~------------------~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAF------------------EAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45778999999999999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
++|++..++..+|.++...|++++|+..++++++++|++
T Consensus 80 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999999999999999999999976
No 179
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.27 E-value=6.3e-12 Score=116.63 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=87.4
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCc----------------
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS---------------- 246 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~---------------- 246 (760)
|+|.. +|++|.+||.+ |.+|.+|++||.+. . .+.|.|+ +|++.+|+.|++|.|+.+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~-~---~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL-G---MDPVPLP--NVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT-C---CSSEECT--TCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc-C---CCceecC--CcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 77876 78999999998 99999999999752 1 4579998 899999999999999987
Q ss_pred ----------cCCCChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHH
Q 004336 247 ----------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMG 293 (760)
Q Consensus 247 ----------~~~~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~ 293 (760)
+. ++.+++.+|+.|||+|++..|.+.||.+++..+.. .+..++.+
T Consensus 77 ~~i~~wD~~F~~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikg-kt~eeiR~ 131 (141)
T 1fs1_B 77 DDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG-KTPEEIRK 131 (141)
T ss_dssp ----HHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-CCHHHHHH
T ss_pred hhhhHHHHHHHh-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 76 99999999999999999999999999999988743 44444433
No 180
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.27 E-value=1.6e-10 Score=102.64 Aligned_cols=116 Identities=17% Similarity=0.116 Sum_probs=78.5
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++.+|..+...|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~---------------- 66 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA------EAWYNLGNAYYKQGDYDEAIEYY---------------- 66 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH------HHHHHHHHHHHHhCCHHHHHHHH----------------
Confidence 44556666666666677777777777777766663 56666677776777777776666
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 522 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~ 522 (760)
++++..+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 67 --~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 67 --QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp --HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 6666666666666667777777777777777777777776776666666666666544
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.27 E-value=2.2e-11 Score=115.59 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhh--------CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTL--------SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 450 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l--------~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~ 450 (760)
....+..+...|..++..|+|++|+..|++++.. +|..+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~--------------------------------- 53 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEP--------------------------------- 53 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSH---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHH---------------------------------
Confidence 3456778889999999999999999999999998 34332
Q ss_pred cccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Q 004336 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 530 (760)
Q Consensus 451 ~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~ 530 (760)
.....+|.+..+++++|.+|...|++++|+..+++++.++|+++.+++.+|.++..+|++++|+.
T Consensus 54 ---------------~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 118 (162)
T 3rkv_A 54 ---------------EWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118 (162)
T ss_dssp ---------------HHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence 01122355556666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhcCCh
Q 004336 531 KAEESIQMKRSF 542 (760)
Q Consensus 531 ~~~~al~l~p~~ 542 (760)
.|++++.++|++
T Consensus 119 ~~~~al~l~p~~ 130 (162)
T 3rkv_A 119 DLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHHHHCGGG
T ss_pred HHHHHHhcCCCC
Confidence 666666666666
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.27 E-value=4.4e-11 Score=112.47 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=94.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------cHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhh---
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS-------DHE-----RLVYEGWILYDTSHCEEGLRKAEESIQM--- 538 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~-------~~~-----a~~~Lg~i~~~~g~~eeAl~~~~~al~l--- 538 (760)
.+..+.++|..+...|++++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3567889999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ----cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 539 ----KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQAL----NNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 539 ----~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~----~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
+|++ ..+| +++|.++...|++++|+.+|++++
T Consensus 90 ~~e~~pd~----------------------------------------~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 90 RGELNQDE----------------------------------------GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HCCTTSTH----------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCCch----------------------------------------HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 9998 6777 999999999999999999999999
Q ss_pred hhcch
Q 004336 611 KIRHT 615 (760)
Q Consensus 611 ~~~~~ 615 (760)
++.|.
T Consensus 130 el~p~ 134 (159)
T 2hr2_A 130 EMIEE 134 (159)
T ss_dssp HHHHH
T ss_pred hcCCC
Confidence 98776
No 183
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.27 E-value=1.4e-10 Score=102.05 Aligned_cols=112 Identities=16% Similarity=0.076 Sum_probs=65.6
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~---------------- 61 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH------VLYSNRSAAYAKKGDYQKAYEDG---------------- 61 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHhhccHHHHHHHH----------------
Confidence 34455555555555566666666666666666553 55555566665666666665555
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 518 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i 518 (760)
.+++..+|.++.+++.+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 62 --~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 62 --CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp --HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred --HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 555555555555556666666666666666666666655555555555555544
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.26 E-value=3.9e-12 Score=142.78 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+.+++.+|..++.+|+|++|+..|++++.++|++..+.. +.
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------------~~----------------- 308 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE------------------KE----------------- 308 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH------------------HH-----------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh------------------HH-----------------
Confidence 5678899999999999999999999999999999998852110 00
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.....+....+++++|.+|.++|++++|+..|+++++++|++..+++++|.+|..+|++++|+..|++++++
T Consensus 309 --------~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 309 --------SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 011223346789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCh
Q 004336 539 KRSF 542 (760)
Q Consensus 539 ~p~~ 542 (760)
+|++
T Consensus 381 ~P~~ 384 (457)
T 1kt0_A 381 NPQN 384 (457)
T ss_dssp C---
T ss_pred CCCC
Confidence 9999
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.25 E-value=3.6e-12 Score=143.78 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=125.1
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+.+.+++.+|..++.+|+|++|+..|+++++.+|++. .++..+|.++...|++++|+.++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~-------------- 63 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA------IYYGNRSLAYLRTECYGYALGDA-------------- 63 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH------HHHHHHHHHHHHhcCHHHHHHHH--------------
Confidence 4567788899999999999999999999999999995 99999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHCCCHHHHHHHHH-----
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI--LYDTSHCEEGLRKAE----- 533 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i--~~~~g~~eeAl~~~~----- 533 (760)
+++++.+|+++.+++++|.+|..+|++++|++.|+++++++|++..++..++.+ +...|++++|+..++
T Consensus 64 ----~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 64 ----TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp ----HHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred ----HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 999999999999999999999999999999999999999999999999999998 889999999999999
Q ss_pred ------HHHhhcCCh
Q 004336 534 ------ESIQMKRSF 542 (760)
Q Consensus 534 ------~al~l~p~~ 542 (760)
+++.++|++
T Consensus 140 ~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 140 VDSLDIESMTIEDEY 154 (477)
T ss_dssp TTCCTTSSCCCCTTC
T ss_pred Hhhhhhhhccccccc
Confidence 777777765
No 186
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.25 E-value=2.3e-10 Score=100.60 Aligned_cols=112 Identities=13% Similarity=-0.076 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
+.++..+|..+...|++++|+.++ ++++..+|.++.+++.+|.++...|++++|+..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCY------------------SEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHH------------------HHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 478889999999999999999999 99999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHH
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYAL 552 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l 552 (760)
+..|++..++..+|.++...|++++|+..++++++.+|++ .++..++.+.
T Consensus 66 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 66 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998 7777766553
No 187
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.23 E-value=4.9e-11 Score=107.87 Aligned_cols=101 Identities=17% Similarity=0.017 Sum_probs=88.8
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
++.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..+ +
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~lg~~~~~~g~~~~A~~~~------------------~ 75 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPERE------EAWRSLGLTQAENEKDGLAIIAL------------------N 75 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------H
Confidence 45566777777799999999999999999995 99999999999999999999999 9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 510 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~ 510 (760)
+++..+|++..+++.+|.++...|++++|+..|+++++.+|++..
T Consensus 76 ~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999999999999999999999999997653
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.23 E-value=6.3e-11 Score=111.41 Aligned_cols=102 Identities=10% Similarity=-0.021 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC-------cHH-----HHHHHHHHHHHcCC
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-------KGV-----LYFRQSLLLLRLNC 490 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~ 490 (760)
...+...|..+...|++++|+..+ .++++.+|+ +.. +|.++|.++..+|+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y------------------~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr 72 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANC------------------RRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS 72 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC
Confidence 356778999999999999999999 999999999 444 99999999999999
Q ss_pred HHHHHHHHHHHHHh-------CCCcHHHH----HHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 491 PEAAMRSLQLARQH-------AASDHERL----VYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 491 ~~~Ai~~l~kal~~-------~p~~~~a~----~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+++|+..|++++++ +|++..+| +++|.++..+|++++|+..|+++++++|++
T Consensus 73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999999999 99999999 999999999999999999999999999887
No 189
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.22 E-value=8.9e-11 Score=107.31 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..+..+|..+...|++++|+.++ .+++..+|.++.+++.+|.++...|++++|+..|+++++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~------------------~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACY------------------GRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHH------------------HHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45555555555555555555555 555555555555555555555555555555555555555
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.+|+++.+++.+|.++...|++++|+..|++++.++|+
T Consensus 72 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 55555555555555555555555555555555555544
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.22 E-value=9.4e-11 Score=131.50 Aligned_cols=139 Identities=13% Similarity=0.023 Sum_probs=109.9
Q ss_pred HHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHH--------HhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHH
Q 004336 374 ESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAI--------LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 445 (760)
Q Consensus 374 ~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~a--------L~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~ 445 (760)
..+......+..++..|........|.+|+...... ....+.. ..++..+|.++...|++++|+.+
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~------~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL------LAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH------HHHHHHHHHHHHHhcCHHHHHHH
Confidence 334445667777777777777777777777765332 1122222 47899999999999999999999
Q ss_pred HhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Q 004336 446 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 525 (760)
Q Consensus 446 l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~ 525 (760)
+ .+++..+|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++...|++
T Consensus 340 ~------------------~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 340 C------------------DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp H------------------HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred H------------------HHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHH
Q 004336 526 EEGLRK-AEESI 536 (760)
Q Consensus 526 eeAl~~-~~~al 536 (760)
++|... |++.+
T Consensus 402 ~~a~~~~~~~~f 413 (457)
T 1kt0_A 402 NERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 988753 44433
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.22 E-value=9.6e-11 Score=109.09 Aligned_cols=145 Identities=13% Similarity=0.050 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+.++..+|.++...|++++|+..+++++...+..........++..+|.++...|++++|..++
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------------ 72 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYY------------ 72 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHH------------
Confidence 45677889999999999999999999999999987765444445568899999999999999999999
Q ss_pred CcHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHH
Q 004336 459 GSLSVIYQMLESDAP------KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 459 ~sl~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p------~~~~a~~~Lg~i~~~~g~~e 526 (760)
.+++...+. ...+++.+|.++...|++++|+..++++++..+ ....++..+|.++...|+++
T Consensus 73 ------~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 73 ------KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence 666665432 267889999999999999999999999997632 23567889999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 004336 527 EGLRKAEESIQMKRS 541 (760)
Q Consensus 527 eAl~~~~~al~l~p~ 541 (760)
+|+..+++++++...
T Consensus 147 ~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 147 QAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987543
No 192
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=4.6e-10 Score=117.49 Aligned_cols=187 Identities=11% Similarity=0.013 Sum_probs=154.2
Q ss_pred HHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC--CcHHHHH
Q 004336 402 AEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA--PKGVLYF 479 (760)
Q Consensus 402 A~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p--~~~~~~~ 479 (760)
|+..|++.+...+... .++..+|.++...|++++|+.++ .+.+..+| ++.+++.
T Consensus 85 a~~~l~~l~~~~~~~~------~~~~~la~i~~~~g~~eeAL~~l------------------~~~i~~~~~~~~lea~~ 140 (310)
T 3mv2_B 85 NIEELENLLKDKQNSP------YELYLLATAQAILGDLDKSLETC------------------VEGIDNDEAEGTTELLL 140 (310)
T ss_dssp CCHHHHHTTTTSCCCH------HHHHHHHHHHHHHTCHHHHHHHH------------------HHHHTSSCSTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCc------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHhccCCCcCcHHHHH
Confidence 7888998887764443 66789999999999999999999 99999887 8899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 480 RQSLLLLRLNCPEAAMRSLQLARQHAAS------DHERLVYEGWILYDTS--HCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 480 ~la~~~~~~g~~~~Ai~~l~kal~~~p~------~~~a~~~Lg~i~~~~g--~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
..+.++...|+.+.|.+.++++.+.+|+ ........||+....| ++.+|...|+++....|++.
T Consensus 141 l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-------- 212 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK-------- 212 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH--------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc--------
Confidence 9999999999999999999999999983 2333444466677777 99999999999988888730
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------cchHHHH
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI------------RHTRAHQ 619 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~------------~~~~a~~ 619 (760)
....+.+ ++..+|++++|...++.+++. +++.++.
T Consensus 213 ------------------------------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 213 ------------------------------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp ------------------------------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred ------------------------------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 0233333 799999999999999987764 2337888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH
Q 004336 620 GLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 655 (760)
Q Consensus 620 ~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 655 (760)
+++.+....|+ +|.++++++.+..|+.+.+....
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999997 88999999999999888877654
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.20 E-value=2.3e-11 Score=130.88 Aligned_cols=145 Identities=12% Similarity=-0.006 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhc-----------hHHHHHHHHHHHHHccCHHHHHHHHhh
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEG-----------RVAASQLHMLVREHIDNWTIADCWLQL 448 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~-----------~~~a~~~lg~l~~~~g~~~~A~~~l~l 448 (760)
...+..++.+|..++..|+|++|+..|++++...|++..+.. ...++..+|.++...|++++|+.++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~-- 253 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC-- 253 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH--
Confidence 456777889999999999999999999999999998741100 0037888999999999999999998
Q ss_pred hccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHCCCHHH
Q 004336 449 YDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEE 527 (760)
Q Consensus 449 ~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i-~~~~g~~ee 527 (760)
.+++..+|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+ ....+..++
T Consensus 254 ----------------~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 254 ----------------NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp ----------------HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred ----------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999988888 445677888
Q ss_pred HHHHHHHHHhhcCCh
Q 004336 528 GLRKAEESIQMKRSF 542 (760)
Q Consensus 528 Al~~~~~al~l~p~~ 542 (760)
+...|++++...|++
T Consensus 318 a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 318 QKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHhhCCCCCC
Confidence 888999998888876
No 194
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.19 E-value=2.5e-10 Score=108.20 Aligned_cols=111 Identities=11% Similarity=-0.055 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAA 494 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A 494 (760)
+..+...|..+...|++++|+..+ .+++.. +|.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y------------------~~al~~~~~~~~~~~~~~~~~----------------- 55 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAY------------------RDALTRLDTLILREKPGEPEW----------------- 55 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHHHHTSCTTSHHH-----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHHHHhcccCCCCHHHH-----------------
Confidence 477889999999999999999999 777776 3443321
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHH
Q 004336 495 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDAL 573 (760)
Q Consensus 495 i~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl 573 (760)
...+|.+..++.++|.++..+|++++|+..+++++.++|++ .+++.+|.++... +....++..+++++
T Consensus 56 -------~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~----g~~~~A~~~~~~al 124 (162)
T 3rkv_A 56 -------VELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAA----WKLDEAEEDLKLLL 124 (162)
T ss_dssp -------HHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH----hcHHHHHHHHHHHH
Confidence 23457788999999999999999999999999999999999 9999999999987 66778888888888
Q ss_pred hhhHhh
Q 004336 574 KCPSDR 579 (760)
Q Consensus 574 ~~~~~~ 579 (760)
......
T Consensus 125 ~l~p~~ 130 (162)
T 3rkv_A 125 RNHPAA 130 (162)
T ss_dssp HHCGGG
T ss_pred hcCCCC
Confidence 876654
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.19 E-value=8.7e-11 Score=110.25 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=85.1
Q ss_pred HHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Q 004336 434 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP----------EAAMRSLQLARQ 503 (760)
Q Consensus 434 ~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~Ai~~l~kal~ 503 (760)
.+.+++++|+..+ +++++.+|+++++|+++|.++...+++ ++|+..|+++++
T Consensus 13 ~r~~~feeA~~~~------------------~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ 74 (158)
T 1zu2_A 13 DRILLFEQIRQDA------------------ENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL 74 (158)
T ss_dssp HHHHHHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH------------------HHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH
Confidence 3567788888888 999999999999999999999999875 599999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhhcCCh
Q 004336 504 HAASDHERLVYEGWILYDTS-----------HCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g-----------~~eeAl~~~~~al~l~p~~ 542 (760)
++|++.++++++|.+|..+| ++++|+..|+++++++|++
T Consensus 75 ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 75 IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999885 8999999999999999999
No 196
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.18 E-value=6.8e-12 Score=119.06 Aligned_cols=94 Identities=17% Similarity=0.298 Sum_probs=53.0
Q ss_pred eEEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCc---------------
Q 004336 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS--------------- 246 (760)
Q Consensus 183 dv~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~--------------- 246 (760)
-|+|+. +|++|.+||.+ |.+|.||++||.++. ..+.|.|+ +|++.+|+.|++|+|+.+
T Consensus 5 ~v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~ 78 (160)
T 2p1m_A 5 KIVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLP--NVTSKILAKVIEYCKRHVEAAASKAEAVEGAAT 78 (160)
T ss_dssp ---CCC---------CHH-HHTCTTTC---------------CCT--TSCHHHHHHHHHC--------------------
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCC--cCcHHHHHHHHHHHHHcccCCCccccccccccc
Confidence 377775 79999999998 899999999998753 33479998 899999999999999987
Q ss_pred ------------cCCCChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcC
Q 004336 247 ------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (760)
Q Consensus 247 ------------~~~~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~ 283 (760)
+. ++.+++.+|+.|||+|++..|.+.||.+++..+.
T Consensus 79 ~~~~i~~wD~~Fl~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 126 (160)
T 2p1m_A 79 SDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVADMIK 126 (160)
T ss_dssp -----------------------CHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred ccchhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 55 8999999999999999999999999999999874
No 197
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.18 E-value=9.4e-11 Score=102.28 Aligned_cols=105 Identities=13% Similarity=0.064 Sum_probs=97.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC--hHHHHHH
Q 004336 471 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--FEAFFLK 548 (760)
Q Consensus 471 ~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~--~~a~~~l 548 (760)
+|+++..++.+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..|+ +
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------ 75 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN------ 75 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch------
Confidence 57888899999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred HHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcch
Q 004336 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 549 a~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~-g~~~eA~~~~~~Al~~~~~ 615 (760)
..++..+|.++... |++++|++++++++...|.
T Consensus 76 ----------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 76 ----------------------------------KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp ----------------------------------HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred ----------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 78889999999999 9999999999999886653
No 198
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.17 E-value=5e-10 Score=101.04 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=74.2
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
++.+|..++..|++++|+..|++++..+|+++. ...+++.+|.++...|++++|+.++ .
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~------------------~ 63 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVY---TPNALYWLGESYYATRNFQLAEAQF------------------R 63 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT---HHHHHHHHHHHHHHTTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc---cHHHHHHHHHHHHHhccHHHHHHHH------------------H
Confidence 455566666666777777777777777776631 0146666666666667776666666 6
Q ss_pred HHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004336 466 QMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 521 (760)
Q Consensus 466 ~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~ 521 (760)
+++..+|++ +.+++.+|.++...|++++|+..|+++++..|++..+...+..+...
T Consensus 64 ~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 64 DLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 666666666 66666666666666666666666666666666666555544444433
No 199
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4e-10 Score=103.89 Aligned_cols=117 Identities=14% Similarity=0.069 Sum_probs=87.0
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++.+|..++..|++++|+..|++++..+|++.. ...++..+|.++...|++++|+.++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~---------------- 88 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD---QAVLHRNRAACHLKLEDYDKAETEA---------------- 88 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---HHHHHHHHHHHHHHHccHHHHHHHH----------------
Confidence 455667777777778888888888888888887510 1266777777777777777777777
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 520 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~ 520 (760)
.+++..+|++..+++.+|.++...|++++|+..|+++++.+|++..++..++.+..
T Consensus 89 --~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 89 --SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp --HHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred --HHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777776666543
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.8e-09 Score=117.48 Aligned_cols=202 Identities=11% Similarity=0.024 Sum_probs=157.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhc-----------hHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEG-----------RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~-----------~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
+...|+|++|++.|.+++...|....... ...++..+|.+|...|++++|..++
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~--------------- 78 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFI--------------- 78 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH---------------
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHH---------------
Confidence 34445999999999999999987653221 2246888999999999999999998
Q ss_pred HHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHH
Q 004336 462 SVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHA------ASDHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 462 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~------p~~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
.+++...+.. ..+...+|.++...|++++|+..+++++... +....++..+|.++...|++++|+
T Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (434)
T 4b4t_Q 79 ---PHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL 155 (434)
T ss_dssp ---HHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---HHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence 5555443322 2345667888888999999999999998753 334678899999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 530 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 530 ~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
..+++++...... . .......++..+|.+|...|++++|...|+++
T Consensus 156 ~~l~~~~~~~~~~------------------------~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 156 ALINDLLREFKKL------------------------D----------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp HHHHHHHHHHTTS------------------------S----------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc------------------------c----------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 9999988653222 0 00011678999999999999999999999999
Q ss_pred Hhhc-----ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 610 LKIR-----HT----RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 610 l~~~-----~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
+.+. +. ..+..+|.++...|++++|...+.++++..+
T Consensus 202 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 202 RTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 8842 22 5677889999999999999999999887654
No 201
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.16 E-value=1.8e-10 Score=100.42 Aligned_cols=106 Identities=9% Similarity=0.009 Sum_probs=100.5
Q ss_pred CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 004336 413 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 492 (760)
Q Consensus 413 ~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 492 (760)
+|++. .++..+|.++...|++++|+.++ .+++..+|.+..+++.+|.++...|+++
T Consensus 2 ~p~~~------~~~~~~~~~~~~~~~~~~A~~~~------------------~~a~~~~~~~~~~~~~~a~~~~~~~~~~ 57 (112)
T 2kck_A 2 VDQNP------EEYYLEGVLQYDAGNYTESIDLF------------------EKAIQLDPEESKYWLMKGKALYNLERYE 57 (112)
T ss_dssp CCSST------TGGGGHHHHHHSSCCHHHHHHHH------------------HHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCCcH------HHHHHHHHHHHHhhhHHHHHHHH------------------HHHHHhCcCCHHHHHHHHHHHHHccCHH
Confidence 56664 77788999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhcCCh
Q 004336 493 AAMRSLQLARQHAAS--DHERLVYEGWILYDT-SHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 493 ~Ai~~l~kal~~~p~--~~~a~~~Lg~i~~~~-g~~eeAl~~~~~al~l~p~~ 542 (760)
+|+..|+++++..|. +..++..+|.++... |++++|+..+++++...|+.
T Consensus 58 ~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 58 EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999999 999999999999999 99999999999999998864
No 202
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=6.4e-10 Score=102.50 Aligned_cols=113 Identities=13% Similarity=-0.024 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQ 499 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~ 499 (760)
...+..+|..+...|++++|+.++ ++++..+|++ ..+++.+|.++...|++++|+..++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~------------------~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 89 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAY------------------TQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEAS 89 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH------------------HHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH------------------HHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 488999999999999999999999 9999999998 8999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHH
Q 004336 500 LARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALA 553 (760)
Q Consensus 500 kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~ 553 (760)
++++.+|++..+++.+|.++...|++++|+..|++++.++|++ .++..++.+..
T Consensus 90 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 90 KAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998 77766665543
No 203
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.15 E-value=6.5e-10 Score=100.32 Aligned_cols=101 Identities=8% Similarity=-0.064 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~Ai~~l~k 500 (760)
.+++.+|..+...|++++|+..+ .+++..+|++. .+++.+|.++...|++++|+..|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 64 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLF------------------LSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRD 64 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH------------------HHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45678999999999999999999 99999999988 8999999999999999999999999
Q ss_pred HHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 501 ARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 501 al~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+++..|++ +.+++.+|.++...|++++|+..|++++...|++
T Consensus 65 ~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 99999999 8999999999999999999999999999999988
No 204
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.15 E-value=2.6e-10 Score=124.13 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCc----------chhchHHHHHHHHHHHHHccCHHHHHHHHhhh
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYR----------MFEGRVAASQLHMLVREHIDNWTIADCWLQLY 449 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~----------~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~ 449 (760)
...+..+..+|..++..|+|++|+..|+++++..|..+ .......++..+|.++...|++++|+.++
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~--- 296 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC--- 296 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH---
Confidence 45667788899999999999999999999998433210 00011366777777777777777777777
Q ss_pred ccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 004336 450 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 450 ~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
.+++..+|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus 297 ---------------~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 297 ---------------LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp ---------------HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777776664
Q ss_pred H
Q 004336 530 R 530 (760)
Q Consensus 530 ~ 530 (760)
.
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 205
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.15 E-value=3.9e-10 Score=101.17 Aligned_cols=116 Identities=12% Similarity=0.025 Sum_probs=104.8
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+..++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~--------------- 61 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM------TYITNQAAVYFEKGDYNKCRELC--------------- 61 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHhccHHHHHHHH---------------
Confidence 467788899999999999999999999999999985 88999999999999999999999
Q ss_pred HHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 004336 462 SVIYQMLESDAPK-------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 522 (760)
Q Consensus 462 ~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~ 522 (760)
.+++...|.+ +.+++.+|.++...|++++|+..|+++++..| +...+..++.+....
T Consensus 62 ---~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 62 ---EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp ---HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ---HHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 8888888776 88999999999999999999999999999998 578888887776544
No 206
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.14 E-value=5.9e-10 Score=103.64 Aligned_cols=139 Identities=16% Similarity=0.036 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 548 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~------~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~l 548 (760)
+.++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|+..+++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------ 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Confidence 56788999999999999999999999998755322 478899999999999999999999999764432
Q ss_pred HHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-----h---HHHHH
Q 004336 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-----T---RAHQG 620 (760)
Q Consensus 549 a~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~-----~---~a~~~ 620 (760)
+.. .....++.++|.++...|++++|+.+++++++..+ . .++..
T Consensus 83 ------------------~~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 83 ------------------KDR----------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp ------------------TCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------CCc----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 000 00156888999999999999999999999998421 1 68889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccC
Q 004336 621 LARVHFLKNNKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 621 La~~~~~~g~~~~A~~~l~~al~~~~~ 647 (760)
+|.++...|++++|...++++++....
T Consensus 135 la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887653
No 207
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.11 E-value=2.3e-09 Score=118.14 Aligned_cols=167 Identities=10% Similarity=-0.010 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-----------------ERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~-----------------~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
...+..|..+...|++++|++.|.++++..|... .++..+|.+|...|++++|+..+++++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999887642 36889999999999999999999999987
Q ss_pred cCCh-H------HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh---ccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 539 KRSF-E------AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR---LRKGQALNNLGSVYVDCGQLDLAADCYSN 608 (760)
Q Consensus 539 ~p~~-~------a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~---l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~ 608 (760)
.+.. . ....++.++... +..+..+..+.+++...... ...+.++.++|.+|...|+|++|...+++
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVP----DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCC----SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 6554 2 223334444333 22223333333333333322 11267888899999999999999999998
Q ss_pred HHhh------cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 609 ALKI------RHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 609 Al~~------~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
++.. .+. .++..++++|...|++++|...+++++...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 8873 111 6888899999999999999999988877654
No 208
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.11 E-value=2.5e-11 Score=136.88 Aligned_cols=126 Identities=14% Similarity=0.054 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.++..+|..+...|++++|+.++ +++++.+|+++.+++++|.+|.++|++++|+..|+++++
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~------------------~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 68 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFY------------------SQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 68 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH------------------HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44556778888999999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 583 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~ 583 (760)
++|+++.+++++|.+|..+|++++|+..|+++++++|++ .
T Consensus 69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----------------------------------------~ 108 (477)
T 1wao_1 69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD----------------------------------------K 108 (477)
T ss_dssp SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----------------------------------------T
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------------H
Confidence 999999999999999999999999999999999999998 4
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHH
Q 004336 584 QALNNLGSV--YVDCGQLDLAADCYS 607 (760)
Q Consensus 584 ~a~~~Lg~~--y~~~g~~~eA~~~~~ 607 (760)
.++..++.+ +...|++++|+..++
T Consensus 109 ~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 109 DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp THHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455566666 777888999999988
No 209
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.10 E-value=7.5e-11 Score=126.81 Aligned_cols=136 Identities=16% Similarity=0.085 Sum_probs=87.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-----------------ERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~-----------------~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
+..+..++.+|..+...|++++|+..|++++...|.+. .+++++|.++..+|++++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44567788999999999999999999999999999876 3788888888888888888888888
Q ss_pred HHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 535 SIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 535 al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
+++++|++ ..+++++|.+|...|++++|+..|+++++++|
T Consensus 256 al~~~p~~----------------------------------------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 256 VLTEEEKN----------------------------------------PKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp HHHHCTTC----------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HHHhCCCC----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 88888888 67888888888888888888888888888766
Q ss_pred h--HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhccC
Q 004336 615 T--RAHQGLARVH-FLKNNKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 615 ~--~a~~~La~~~-~~~g~~~~A~~~l~~al~~~~~ 647 (760)
. .++..++.+. ...+..+++...|.+++...|.
T Consensus 296 ~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 296 DDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp ------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 5 6777777763 3445566666666666666653
No 210
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.10 E-value=1.5e-09 Score=97.24 Aligned_cols=114 Identities=8% Similarity=-0.061 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
..++..+|.++...|++++|+.++ .+++..+|.++.+++.+|.++...|++++|+..+++++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~------------------~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHY------------------DKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHH------------------HHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 367889999999999999999999 99999999999999999999999999999999999999
Q ss_pred HhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 503 QHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 503 ~~~p~~-------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
...|.+ ..+++.+|.++...|++++|+..|++++...|+......++.+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 998876 8899999999999999999999999999999966666666655443
No 211
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.07 E-value=1.8e-10 Score=103.01 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 396 RKEYDEAEHLFEAILTL---SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l---~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
.|++++|+..|+++++. +|++. .++..+|.++...|++++|+.++ ++++..+|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~------~~~~~lg~~~~~~~~~~~A~~~~------------------~~al~~~p 58 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLA------ECYLGLGSTFRTLGEYRKAEAVL------------------ANGVKQFP 58 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCT
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCC
Confidence 35777777777777776 35442 66666777777777777777766 67777777
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 518 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i 518 (760)
+++.+++.+|.++...|++++|+..|++++...|+++........+
T Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 7777777777777777777777777777777766666554433333
No 212
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.04 E-value=2.1e-09 Score=116.96 Aligned_cols=114 Identities=10% Similarity=-0.074 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH----------------hCCCcHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE----------------SDAPKGVLYFRQSLLLLR 487 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~----------------~~p~~~~~~~~la~~~~~ 487 (760)
..+..+|..+...|++++|+..+ ++++. .+|.+..+++++|.+|.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y------------------~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKY------------------TKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH------------------HHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999 77776 778889999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcc
Q 004336 488 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 555 (760)
Q Consensus 488 ~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~ 555 (760)
+|++++|+.+++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++ .++..++.++...
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 8888888888776
No 213
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.01 E-value=4.4e-10 Score=100.44 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=81.8
Q ss_pred ccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 004336 436 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES---DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 512 (760)
Q Consensus 436 ~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~ 512 (760)
.|++++|+.++ ++++.. +|+++.+++.+|.+|...|++++|+..|+++++.+|+++.++
T Consensus 3 ~g~~~~A~~~~------------------~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 64 (117)
T 3k9i_A 3 LGLEAQAVPYY------------------EKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64 (117)
T ss_dssp ----CCCHHHH------------------HHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHH------------------HHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHH
Confidence 56777777777 999999 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 513 VYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 513 ~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+++|.++...|++++|+..+++++...|++
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999988
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.00 E-value=1.3e-09 Score=102.36 Aligned_cols=88 Identities=11% Similarity=-0.034 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH----------HHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT----------IADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~----------~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
.|++|+..|+++++++|++. .++..+|.++...++++ +|+..+ +++
T Consensus 17 ~feeA~~~~~~Ai~l~P~~a------ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~l------------------e~A 72 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDA------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKF------------------EEA 72 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH------------------HHH
T ss_pred HHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHH------------------HHH
Confidence 89999999999999999996 99999999999988764 777777 999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLN-----------CPEAAMRSLQLARQHAASDH 509 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g-----------~~~~Ai~~l~kal~~~p~~~ 509 (760)
++++|++..+|+++|.+|..+| ++++|+++|++|++++|++.
T Consensus 73 L~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 73 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999885 89999999999999999975
No 215
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.83 E-value=3e-08 Score=87.82 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++++.
T Consensus 6 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 6 ERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 334444444444444444444444444444444444444444444444444444444444444444444444444443
No 216
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.82 E-value=3.2e-08 Score=82.98 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY 550 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~ 550 (760)
|.++..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++++|++ .++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999 66666665
Q ss_pred HHH
Q 004336 551 ALA 553 (760)
Q Consensus 551 ~l~ 553 (760)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 217
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.82 E-value=3.7e-08 Score=87.25 Aligned_cols=83 Identities=11% Similarity=0.104 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHH
Q 004336 493 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLED 571 (760)
Q Consensus 493 ~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~lee 571 (760)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|++ .+++.+|.++... +....++..+++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ----GDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999 9999999999887 566777788888
Q ss_pred HHhhhHhh
Q 004336 572 ALKCPSDR 579 (760)
Q Consensus 572 Al~~~~~~ 579 (760)
+++.....
T Consensus 79 al~~~~~~ 86 (115)
T 2kat_A 79 GLAAAQSR 86 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHhcccc
Confidence 88877654
No 218
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=6.4e-06 Score=92.89 Aligned_cols=304 Identities=12% Similarity=-0.044 Sum_probs=175.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC-HHHHHHHHhhhccccccCCcCcHHHHHHHHHh---CC
Q 004336 397 KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDIGSLSVIYQMLES---DA 472 (760)
Q Consensus 397 g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~-~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~---~p 472 (760)
|+++.+..+|++++...|.. ..|..........+. .+... ..|+.++.. +|
T Consensus 28 ~~~e~~~~iferal~~~ps~-------~LW~~Y~~f~~~~~~~~~~i~------------------~~fe~al~~vg~d~ 82 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNL-------DLWMLYIEYVRKVSQKKFKLY------------------EVYEFTLGQFENYW 82 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCH-------HHHHHHHHHHHHHC----CTH------------------HHHHHHHHHSTTCT
T ss_pred CCHHHHHHHHHHHhccCCCH-------HHHHHHHHHHHHhCchHHHHH------------------HHHHHHHHHcCCCc
Confidence 59999999999999988833 555554444444332 11122 234666653 78
Q ss_pred CcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH--------------HHCCCHHHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLL----RLNCPEAAMRSLQLARQHAASDHERLVYEGWIL--------------YDTSHCEEGLRKAEE 534 (760)
Q Consensus 473 ~~~~~~~~la~~~~----~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~--------------~~~g~~eeAl~~~~~ 534 (760)
.+..+|......+. ..|+.+.+...|++++...+.+.+.+...-.-+ ...+.+..|...|++
T Consensus 83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~ 162 (493)
T 2uy1_A 83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQ 162 (493)
T ss_dssp TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHH
Confidence 88899988887654 457788999999999996444333222111111 112334455555665
Q ss_pred HHhhcCC-h-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 535 SIQMKRS-F-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSN 608 (760)
Q Consensus 535 al~l~p~-~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~ 608 (760)
+....+. . ..|......-... +..... .+..+.....|++++.. +..|...+..+...|+.++|...|++
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~---~~~~~~-~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~er 238 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMEN---GMKLGG-RPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVER 238 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTC---TTCCCH-HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcC---CccCcc-hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544333 1 3343322222111 111111 01133344455555332 78899999999999999999999999
Q ss_pred HHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------cCcHHHHHHHH----hcCCHHHHHHHHH
Q 004336 609 ALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKA-------------RNNASAYEKRS----EYCDRELTRADLE 669 (760)
Q Consensus 609 Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~-------------~~~~~~~~~~~----~~~~~~~A~~~l~ 669 (760)
|+.. |. ..+...+.. .+.++. ++++.+.. +....++.... ..+..+.|...|+
T Consensus 239 Ai~~-P~~~~l~~~y~~~----~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~ 310 (493)
T 2uy1_A 239 GIEM-SDGMFLSLYYGLV----MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFI 310 (493)
T ss_dssp HHHH-CCSSHHHHHHHHH----TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHhC-CCcHHHHHHHHhh----cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9998 76 333322222 111111 22222111 00111221111 2356788888888
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 004336 670 MVTQLDPLRVYPYRYRAAVLMDSH-KENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 670 kal~l~p~~~~~~~~La~~~~~~g-~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~a 738 (760)
+| ...+.....|...|.+....+ +.+.|...|+.+++..|+.+.+++. +.+....|+.+.|...|+++
T Consensus 311 ~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 311 EL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred Hh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88 433334455655566555555 5888999999998888887766644 55666778888888888876
No 219
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=5.3e-09 Score=91.37 Aligned_cols=94 Identities=10% Similarity=-0.010 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
..++..+|.++...|++++|+.++ .+++..+|.++.+++++|.++...|++++|+..|++++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~------------------~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCY------------------DQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356777788888888888888877 78888888888888888888888888888888888888
Q ss_pred HhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 503 QHAASD------HERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 503 ~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
+++|++ ..+++.+|.++...|++++|+..+++
T Consensus 66 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 66 RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp TSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 888877 77777788887777777766555443
No 220
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.77 E-value=2.8e-08 Score=86.05 Aligned_cols=73 Identities=8% Similarity=0.058 Sum_probs=67.8
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+|+++.+++.+|.+|...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999987654
No 221
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.75 E-value=7.6e-08 Score=80.59 Aligned_cols=83 Identities=12% Similarity=-0.024 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
..++..+|.++...|++++|+.++ .+++..+|++..+++.+|.++...|++++|+..|++++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~------------------~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYY------------------QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHH------------------HHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 478889999999999999999999 99999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCC
Q 004336 503 QHAASDHERLVYEGWILYDTS 523 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g 523 (760)
+.+|++..++..+|.++...|
T Consensus 71 ~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 71 ELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHCTTCHHHHHHHHHHHHHHC
T ss_pred hcCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999988765
No 222
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.73 E-value=9.9e-09 Score=89.59 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=87.3
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+.+++.+|..++..|++++|+..|++++..+|+++ .++..+|.++...|++++|+..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~--------------- 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP------VGYSNKAMALIKLGEYTQAIQMC--------------- 61 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhcCHHHHHHHH---------------
Confidence 356788899999999999999999999999999995 89999999999999999999999
Q ss_pred HHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 462 SVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 462 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Ai~~l~k 500 (760)
++++..+|++ ..+++.+|.++...|+++.|+..+++
T Consensus 62 ---~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 62 ---QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ---HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ---HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9999999999 99999999999999998888776654
No 223
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.72 E-value=8.3e-08 Score=107.80 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=107.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc-----CChHHHH
Q 004336 480 RQSLLLLRLNCPEAAMRSLQLARQH-----AAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMK-----RSFEAFF 546 (760)
Q Consensus 480 ~la~~~~~~g~~~~Ai~~l~kal~~-----~p~---~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~-----p~~~a~~ 546 (760)
..+..+..+|++++|+..+++++++ .|+ ....+.+||.+|..+|+|++|+.++++++++. |++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H---- 389 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN---- 389 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC----
Confidence 3445677899999999999999986 344 45678999999999999999999999999752 221
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------cch---H
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-------RHT---R 616 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-------~~~---~ 616 (760)
..-+..+++||.+|..+|++++|+.+|++|+++ +|+ .
T Consensus 390 ---------------------------------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 436 (490)
T 3n71_A 390 ---------------------------------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD 436 (490)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 011788999999999999999999999999983 444 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004336 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKA 645 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~~l~~al~~~ 645 (760)
....++.++..+|.+++|...|.++.+..
T Consensus 437 ~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 437 LEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999876654
No 224
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.72 E-value=1.9e-07 Score=86.16 Aligned_cols=110 Identities=12% Similarity=0.013 Sum_probs=67.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcC
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p 540 (760)
+++.+.....+. +|.+|...+..++|+++|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+.
T Consensus 19 ~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-- 90 (138)
T 1klx_A 19 VKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-- 90 (138)
T ss_dssp HHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--
Confidence 666655433332 666666666666666666666654 456666666666666 66666666666666543
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcchH
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTR 616 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~~~~~ 616 (760)
.+ +.+++++|.+|.. .+++++|+.+|+++.+.++..
T Consensus 91 g~----------------------------------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~ 130 (138)
T 1klx_A 91 ND----------------------------------------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSED 130 (138)
T ss_dssp TC----------------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CC----------------------------------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHH
Confidence 22 4566666666666 667777777777776666655
Q ss_pred HHHHHH
Q 004336 617 AHQGLA 622 (760)
Q Consensus 617 a~~~La 622 (760)
+...|+
T Consensus 131 A~~~l~ 136 (138)
T 1klx_A 131 ACGILN 136 (138)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 555444
No 225
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.66 E-value=3.6e-08 Score=85.11 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=70.5
Q ss_pred eEEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCc--------------c
Q 004336 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS--------------L 247 (760)
Q Consensus 183 dv~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~--------------~ 247 (760)
-|+|.. +|++|.+||.+ |.+|.+++.||.+++ |.....|.|+ +|+..+|+.|++|.|.-+ -
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp--~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w 80 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELK--QFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEET--TSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecC--CcCHHHHHHHHHHHHHhcccCCCccccccCCCc
Confidence 477876 88999999997 999999999999877 7777899998 799999999999998754 2
Q ss_pred CCCChhhHHHHHHHHhhhCh
Q 004336 248 NGVTPNLLLEILIFANKFCC 267 (760)
Q Consensus 248 ~~~~~~~v~~ll~~a~~~~~ 267 (760)
. ++.+++.+|+.|||+|.+
T Consensus 81 ~-vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 81 E-IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp C-CCHHHHHHHHHHHHHHCC
T ss_pred c-CCHHHHHHHHHHHHHhCc
Confidence 3 889999999999999874
No 226
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.65 E-value=5.3e-07 Score=95.99 Aligned_cols=149 Identities=14% Similarity=0.095 Sum_probs=108.1
Q ss_pred HHHHHHhhhHHHhc---CCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc---cCHH-HHHHHHhhhcccccc
Q 004336 383 LLAFHQLGCVRLLR---KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI---DNWT-IADCWLQLYDRWSSV 455 (760)
Q Consensus 383 A~a~~~lG~~~l~~---g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~---g~~~-~A~~~l~l~~~~~~~ 455 (760)
|..++..|..++.+ .++.+|+.+|+++++++|++. .++..++.++... +.+. ....-+ ...
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a------~A~A~la~a~~~~~~~~~~~~~~~~~l--~~a---- 263 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT------YARAEKALVDIVRHSQHPLDEKQLAAL--NTE---- 263 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHHHSCCCHHHHHHH--HHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhccCCCchhhHHHH--HHH----
Confidence 33444445555544 356899999999999999996 6666666666421 1000 000000 000
Q ss_pred CCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 456 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 456 ~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
+. -..++..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|
T Consensus 264 -----~~-a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 264 -----ID-NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp -----HH-HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----HH-HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 00 01233567999999999999999999999999999999999975 678899999999999999999999999
Q ss_pred HhhcCChHHHHHHHH
Q 004336 536 IQMKRSFEAFFLKAY 550 (760)
Q Consensus 536 l~l~p~~~a~~~la~ 550 (760)
+.++|....++....
T Consensus 337 lrL~P~~~t~~~~~~ 351 (372)
T 3ly7_A 337 FNLRPGANTLYWIEN 351 (372)
T ss_dssp HHHSCSHHHHHHHHH
T ss_pred HhcCCCcChHHHHhC
Confidence 999999855544433
No 227
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.63 E-value=3.1e-08 Score=85.08 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=64.6
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccC--CCCCCccceeEecCCCCCHHHHHHHHhccccCc-----------cCC
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LNG 249 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~--~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~-----------~~~ 249 (760)
|+|.. +|++|.+||.+ |.+|.+++.||.+ ++.|+....|.|+ +|+..+|+.|++|.|.-+ -.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~- 78 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP- 78 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHHSCCSCCCCCC-
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCC--CCCHHHHHHHHHHHHHccccCCCcccCCCcc-
Confidence 67765 88999999997 9999999999974 4578878899998 899999999999998754 23
Q ss_pred CChhhHHHHHHHHhhhCh
Q 004336 250 VTPNLLLEILIFANKFCC 267 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~ 267 (760)
++.+.+.+|+.|||.|.+
T Consensus 79 vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 79 IAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCTTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 889999999999999874
No 228
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.62 E-value=1.5e-07 Score=81.32 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=64.0
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 583 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~ 583 (760)
.+|+++.+++.+|.++...|++++|+..|+++++++|++ .
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------------------------~ 41 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY----------------------------------------V 41 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------------------------------------T
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------------------------------H
Confidence 468999999999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
.++..+|.+|...|++++|+..|++++++.+.
T Consensus 42 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 42 GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 88999999999999999999999999986543
No 229
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=3.2e-05 Score=87.13 Aligned_cols=207 Identities=10% Similarity=-0.049 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHH
Q 004336 491 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLL 569 (760)
Q Consensus 491 ~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~l 569 (760)
.+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.. ..++..+...... ...+.+
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~--------~~~~~l 265 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE--------AVYGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT--------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh--------HHHHHH
Confidence 345678999999999999999999999999999999999999999999 988 5555443331110 011111
Q ss_pred HHHHhhhHh-------hccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 570 EDALKCPSD-------RLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTK 640 (760)
Q Consensus 570 eeAl~~~~~-------~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~ 640 (760)
.++...+.. ......+|...+......++.+.|...|++| ...+. ..+...|.+....|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~----------- 333 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT----------- 333 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC-----------
Confidence 111100000 0001233444444444444444455555444 21111 22222222222222
Q ss_pred HHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-H
Q 004336 641 LIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-A 719 (760)
Q Consensus 641 al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a 719 (760)
++.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++ +....++.. .
T Consensus 334 ------------------~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~ 391 (493)
T 2uy1_A 334 ------------------GSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMI 391 (493)
T ss_dssp ------------------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHH
T ss_pred ------------------CChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHH
Confidence 24566777777777777777666666677777788888888888887 334555544 4
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 004336 720 AFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 720 ~~~~~~g~~~~A~~~~~~aL~ 740 (760)
.+-...|+.+.+...+++++.
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 455556888888888888774
No 230
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.62 E-value=4.4e-07 Score=83.70 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhH
Q 004336 489 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSL 568 (760)
Q Consensus 489 g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~ 568 (760)
+++++|+.+|+++.+....... +|.+|...+..++|+.+|+++.+. .+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~-------------------------- 56 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NS-------------------------- 56 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TC--------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CC--------------------------
Confidence 4688999999999988754443 999999999999999999999865 33
Q ss_pred HHHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcchHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 004336 569 LEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAHQGLARVHFL----KNNKTTAYEEMTK 640 (760)
Q Consensus 569 leeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~----~g~~~~A~~~l~~ 640 (760)
+.+++++|.+|.. .+++++|+.+|+++.+.+.+.+.++||.+|.. .+++++|+.+|++
T Consensus 57 --------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 57 --------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp --------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 6788999999998 89999999999999999889999999999999 8999999999999
Q ss_pred HHHhcc
Q 004336 641 LIKKAR 646 (760)
Q Consensus 641 al~~~~ 646 (760)
+.+...
T Consensus 123 Aa~~g~ 128 (138)
T 1klx_A 123 ACRLGS 128 (138)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 887654
No 231
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.61 E-value=2.6e-07 Score=103.76 Aligned_cols=123 Identities=11% Similarity=0.018 Sum_probs=101.9
Q ss_pred hcCCHHHHHHHHHHHHhhC-----CCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 395 LRKEYDEAEHLFEAILTLS-----PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~-----P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
.+|+|++|+.+++++|++. |+++. ....+..+|.+|..+|+|++|+.++ ++++.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~------------------~~aL~ 379 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLY---VLRLLSIASEVLSYLQAYEEASHYA------------------RRMVD 379 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHhcCHHHHHHHH------------------HHHHH
Confidence 4459999999999999763 55542 2467899999999999999999999 55554
Q ss_pred h--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHH
Q 004336 470 S--------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-----AASD---HERLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 470 ~--------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-----~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
. +|+-+..+.++|.+|..+|++++|+..|++|+++ .|++ .+....++.++..+|.+++|...|+
T Consensus 380 i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~ 459 (490)
T 3n71_A 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH 459 (490)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2556778999999999999999999999999975 4555 4567789999999999999999999
Q ss_pred HHHhh
Q 004336 534 ESIQM 538 (760)
Q Consensus 534 ~al~l 538 (760)
++.+.
T Consensus 460 ~~~~~ 464 (490)
T 3n71_A 460 KMREA 464 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
No 232
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.57 E-value=9.8e-08 Score=81.77 Aligned_cols=89 Identities=10% Similarity=-0.047 Sum_probs=59.8
Q ss_pred HHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004336 428 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV-LYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506 (760)
Q Consensus 428 ~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~Ai~~l~kal~~~p 506 (760)
..|..+...|++++|+..+ ++++..+|++.. +++.+|.++...|++++|+..|+++++.+|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~------------------~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQAL------------------EEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHH------------------HHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHH------------------HHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4566666677777777777 777777777776 777777777777777777777777777777
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 507 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 507 ~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
++..++.+ +.+.+|+..|++++..+|++
T Consensus 67 ~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 67 DSPALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp TSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred CcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 76666533 45566666666666555543
No 233
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.55 E-value=1.2e-07 Score=81.28 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-RLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~-a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+.+|..+...|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..|+++++++|++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 357889999999999999999999999999999 99999999999999999999999999999998
No 234
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.40 E-value=7.2e-07 Score=84.93 Aligned_cols=98 Identities=23% Similarity=0.255 Sum_probs=79.7
Q ss_pred eeEEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCC----CCccceeEecCCCCCHHHHHHHHhccccCc----------
Q 004336 182 RNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGS---------- 246 (760)
Q Consensus 182 ~dv~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~----e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~---------- 246 (760)
.-|+|.. +|++|.++|.+ |..|..++.|+...-. +.....|.|+ +|+..+|+.|++|.+.-+
T Consensus 7 ~~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~~~ 83 (169)
T 3v7d_A 7 SNVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVP--NVRSSVLQKVIEWAEHHRDSNFPDEDDD 83 (169)
T ss_dssp CEEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECT--TCCHHHHHHHHHHHHHTTTCCCCC----
T ss_pred CeEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeC--CCCHHHHHHHHHHHHHcccCCCcccccc
Confidence 3577765 68899999997 8899999999974322 3444789998 799999999999987643
Q ss_pred ---------------cCCCChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcC
Q 004336 247 ---------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (760)
Q Consensus 247 ---------------~~~~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~ 283 (760)
+. ++.+.+.+|+.|||+|++..|.+.||..++..+.
T Consensus 84 ~~~~~~~i~~wD~~Fl~-vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 84 DSRKSAPVDSWDREFLK-VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp ----CCCCCHHHHHHTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred cccccccccHHHHHHHc-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 33 7889999999999999999999999999987763
No 235
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.33 E-value=2e-05 Score=83.92 Aligned_cols=143 Identities=13% Similarity=0.068 Sum_probs=100.8
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHH
Q 004336 589 LGSVYVDC---GQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDREL 663 (760)
Q Consensus 589 Lg~~y~~~---g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 663 (760)
.|..+... ..+.+|+.+|++|++.+|. .++..++.+|..... ..+........+ ..
T Consensus 202 ra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~-------------~~~~~~~~~~~l------~~ 262 (372)
T 3ly7_A 202 QAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHS-------------QHPLDEKQLAAL------NT 262 (372)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-------------HSCCCHHHHHHH------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc-------------cCCCchhhHHHH------HH
Confidence 34444443 3458999999999999888 777777777762110 111111111111 22
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004336 664 TRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDP 743 (760)
Q Consensus 664 A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P 743 (760)
+... ..++..+|.++.++..++.++...|++++|+..+++|+.++|+...+.+.+.++...|++++|++.|++|+.++|
T Consensus 263 a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 263 EIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 2221 134467899999999999988888999999999999999998744444668899889999999999999999999
Q ss_pred CcHHHHHHH
Q 004336 744 NDQEMLELH 752 (760)
Q Consensus 744 ~~~~~l~~~ 752 (760)
..+ ++.+.
T Consensus 342 ~~~-t~~~~ 349 (372)
T 3ly7_A 342 GAN-TLYWI 349 (372)
T ss_dssp SHH-HHHHH
T ss_pred CcC-hHHHH
Confidence 876 44443
No 236
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.32 E-value=2.8e-06 Score=72.51 Aligned_cols=72 Identities=11% Similarity=-0.018 Sum_probs=68.2
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 471 DAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 471 ~p~~~~~~~~la~~~~~~g~---~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+|+++.++..+|.++...++ .++|...++++++.+|+++.+++.+|.+++..|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 58999999999999987766 7999999999999999999999999999999999999999999999998875
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.22 E-value=1.2e-05 Score=82.11 Aligned_cols=85 Identities=14% Similarity=0.028 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCc-HHHH-HHHHHHHH-cCCHHH
Q 004336 661 RELTRADLEMVTQLDPL--RVYPYRYRAAVLMDS-----HKENEAIAELSRAIAFKADL-HLLH-LRAAFHEH-TGDVLG 730 (760)
Q Consensus 661 ~~~A~~~l~kal~l~p~--~~~~~~~La~~~~~~-----g~~~eAi~~l~kal~~~p~~-~~~~-l~a~~~~~-~g~~~~ 730 (760)
..+|...+++++++||+ +..+|..+|.+|... |+.++|..+|++|++++|+. ...+ .-+.++.. .|++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 46788889999999999 677999999999985 99999999999999999964 5554 44666665 599999
Q ss_pred HHHHHHHHHhcCCCc
Q 004336 731 ALRDCRAALSVDPND 745 (760)
Q Consensus 731 A~~~~~~aL~l~P~~ 745 (760)
|.+.+++++..+|..
T Consensus 259 a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 259 FDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999988773
No 238
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.20 E-value=1.1e-05 Score=89.10 Aligned_cols=101 Identities=10% Similarity=-0.025 Sum_probs=81.1
Q ss_pred cCCHHHHHHHHHHHHhh-----CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHH----HHHH
Q 004336 658 YCDRELTRADLEMVTQL-----DPLRV---YPYRYRAAVLMDSHKENEAIAELSRAIAF-----KADLHLLH----LRAA 720 (760)
Q Consensus 658 ~~~~~~A~~~l~kal~l-----~p~~~---~~~~~La~~~~~~g~~~eAi~~l~kal~~-----~p~~~~~~----l~a~ 720 (760)
+|++++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++++ .|+++..- -.|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46667777777776653 34444 56789999999999999999999999964 46666433 2389
Q ss_pred HHHHcCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHHhhcc
Q 004336 721 FHEHTGDVLGALRDCRAALS-----VDPNDQEMLELHSRVYSH 758 (760)
Q Consensus 721 ~~~~~g~~~~A~~~~~~aL~-----l~P~~~~~l~~~~r~~~~ 758 (760)
+|..+|++++|+..|++|++ +.|+||.+.++++.+.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~~ 433 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIESH 433 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHCC
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhcC
Confidence 99999999999999999997 689999999999887753
No 239
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.17 E-value=1.1e-05 Score=74.71 Aligned_cols=96 Identities=14% Similarity=0.063 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CcH-HHHHHHHHHHHcCCHHHHHHHH
Q 004336 662 ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSH---KENEAIAELSRAIAFK-A-DLH-LLHLRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 662 ~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g---~~~eAi~~l~kal~~~-p-~~~-~~~l~a~~~~~~g~~~~A~~~~ 735 (760)
..+...|.+.++.+|.+..+.+++|+++.+.+ +.++++..++..+... | +.. .++..+..+.++|+|++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 55677788888889999999999999999998 6779999999999988 6 223 4446688889999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHhhc
Q 004336 736 RAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 736 ~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
+++|+++|+|..+..+...+.+
T Consensus 95 ~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999988766653
No 240
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.12 E-value=1.2e-05 Score=68.48 Aligned_cols=74 Identities=16% Similarity=0.073 Sum_probs=63.0
Q ss_pred CCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 004336 675 DPLRVYPYRYRAAVLMDSHK---ENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEM 748 (760)
Q Consensus 675 ~p~~~~~~~~La~~~~~~g~---~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~ 748 (760)
+|+++..+..+|.+++..++ .++|...++++++.+|++.... +.|..+...|+|++|+..|+++++.+|+++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 68889999999998876655 7999999999999999998766 55888888899999999999999999885443
No 241
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.11 E-value=1.5e-05 Score=73.90 Aligned_cols=85 Identities=13% Similarity=0.064 Sum_probs=76.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g---~~~~Ai~~l~kal~~~-p-~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
|.+.+..++.+.++.|++|.++.+.+ +.++++..++..++.+ | ...+++++||..+++.|+|++|..++++++++
T Consensus 21 y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 21 FQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 47777788999999999999999998 6679999999999998 7 56899999999999999999999999999999
Q ss_pred cCCh-HHHHHH
Q 004336 539 KRSF-EAFFLK 548 (760)
Q Consensus 539 ~p~~-~a~~~l 548 (760)
+|++ .+...+
T Consensus 101 eP~n~QA~~Lk 111 (152)
T 1pc2_A 101 EPQNNQAKELE 111 (152)
T ss_dssp CTTCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 9999 554443
No 242
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.10 E-value=1.5e-05 Score=88.06 Aligned_cols=108 Identities=15% Similarity=-0.001 Sum_probs=85.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc-----CChHHHHHHH
Q 004336 483 LLLLRLNCPEAAMRSLQLARQH-----AASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMK-----RSFEAFFLKA 549 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~-----~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~-----p~~~a~~~la 549 (760)
.-+..+|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+. |++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H------- 367 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH------- 367 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC-------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC-------
Confidence 3456789999999999999975 3444 4678999999999999999999999999752 221
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------cch---HHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-------RHT---RAHQ 619 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-------~~~---~a~~ 619 (760)
...+..++++|.+|..+|++++|+.+|++|+++ +|+ .++.
T Consensus 368 ------------------------------p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~ 417 (429)
T 3qwp_A 368 ------------------------------PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL 417 (429)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred ------------------------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 011788999999999999999999999999984 343 5556
Q ss_pred HHHHHHHH
Q 004336 620 GLARVHFL 627 (760)
Q Consensus 620 ~La~~~~~ 627 (760)
+|+.+...
T Consensus 418 ~l~~~~~e 425 (429)
T 3qwp_A 418 LLEECDAN 425 (429)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 243
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.09 E-value=1.3e-05 Score=70.25 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=77.1
Q ss_pred eEEEEecCeEeehhHHHHhcCCH-HHHhhccCCCC----CCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHH
Q 004336 183 NVVFRIHEEKIECDRQKFAALSA-PFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLL 256 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~-yf~amf~~~~~----e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~ 256 (760)
=|+|-|||..|...+..|....+ +|.+||.++.. .....++-| +-+|..++.|++|..||+|. ++.+ .+.
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi---DRdp~~F~~IL~~lr~g~l~-~p~~~~~~ 82 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI---DRDPTYFGPVLNYLRHGKLV-INKDLAEE 82 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE---CSCHHHHHHHHHHHHHSCCC-CCTTSCHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe---cCChHHHHHHHHHhCCCeeC-CCCCCCHH
Confidence 47889999999999999998864 68999987521 113456766 68999999999999999996 6554 357
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHh
Q 004336 257 EILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
.++.-|..|+++.|++.|.+.+..
T Consensus 83 ~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 83 GVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 899999999999999999987653
No 244
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.07 E-value=4.1e-06 Score=73.77 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=63.8
Q ss_pred eEEEE-ecCeEeehhHHHHhcCCHHHHhhcc--CCCCCCccceeEecCCCCCHHHHHHHHhccccCc-----------cC
Q 004336 183 NVVFR-IHEEKIECDRQKFAALSAPFSAMLN--GSFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LN 248 (760)
Q Consensus 183 dv~~~-~~~~~~~~hr~~la~~s~yf~amf~--~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~-----------~~ 248 (760)
-|+|. .+|++|.++|. .|..|..++.|+. |++.|+....|.|+ +|+..+|+.|++|.+.-+ -.
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCC--CCCHHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 47777 57899999999 5889999999997 44567777799998 799999999999997644 23
Q ss_pred CCChhhHHHHHHHHhhhCh
Q 004336 249 GVTPNLLLEILIFANKFCC 267 (760)
Q Consensus 249 ~~~~~~v~~ll~~a~~~~~ 267 (760)
++.+++.+|+.|||+|.+
T Consensus 95 -vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 -IAPEIALELLMAANFLDC 112 (112)
T ss_dssp -CCHHHHHHHHHHHHHHTC
T ss_pred -cCHHHHHHHHHHHHHhCc
Confidence 899999999999999874
No 245
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.07 E-value=6.9e-05 Score=76.63 Aligned_cols=79 Identities=5% Similarity=-0.032 Sum_probs=73.3
Q ss_pred HHHHHHhCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHH-CCCHHHHHHHHHH
Q 004336 464 IYQMLESDAP--KGVLYFRQSLLLLRL-----NCPEAAMRSLQLARQHAASD-HERLVYEGWILYD-TSHCEEGLRKAEE 534 (760)
Q Consensus 464 ~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~Ai~~l~kal~~~p~~-~~a~~~Lg~i~~~-~g~~eeAl~~~~~ 534 (760)
++++++++|+ ++.+|..+|.+|... |+.++|.++|+++++++|+. ..+++.+|..+.. .|++++|...+++
T Consensus 186 lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 186 LERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4999999999 788999999999995 99999999999999999975 9999999999988 5999999999999
Q ss_pred HHhhcCCh
Q 004336 535 SIQMKRSF 542 (760)
Q Consensus 535 al~l~p~~ 542 (760)
++..+|..
T Consensus 266 AL~a~p~~ 273 (301)
T 3u64_A 266 ALAIDPES 273 (301)
T ss_dssp HHHCCGGG
T ss_pred HHcCCCCC
Confidence 99987763
No 246
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.06 E-value=3.2e-05 Score=67.23 Aligned_cols=76 Identities=9% Similarity=0.005 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAF 545 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-------p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~ 545 (760)
++.-.+.+|..+...|+|..|+.+|++|++.. +....++..+|.+++.+|++++|+..++++++++|++ .+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45677899999999999999999999999863 3567899999999999999999999999999999999 666
Q ss_pred HHHH
Q 004336 546 FLKA 549 (760)
Q Consensus 546 ~~la 549 (760)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6655
No 247
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.97 E-value=6.3e-05 Score=82.96 Aligned_cols=96 Identities=13% Similarity=0.044 Sum_probs=74.1
Q ss_pred hcCCHHHHHHHHHHHHhh-----CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 395 LRKEYDEAEHLFEAILTL-----SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l-----~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
..|+|++|+.+|+++|++ .|+++. ....+..+|.+|..+|+|++|+.++ ++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~------------------~~aL~ 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVY---MLHMMYQAMGVCLYMQDWEGALKYG------------------QKIIK 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchH---HHHHHHHHHHHHHhhcCHHHHHHHH------------------HHHHH
Confidence 345999999999999975 466652 2467889999999999999999999 55554
Q ss_pred h--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHH
Q 004336 470 S--------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-----AASDHER 511 (760)
Q Consensus 470 ~--------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-----~p~~~~a 511 (760)
. +|+-+..++++|.+|..+|++++|+.+|++|+++ .|+++.+
T Consensus 369 i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 3 2455667788888888888888888888888765 4555544
No 248
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.90 E-value=5.4e-05 Score=83.56 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=79.7
Q ss_pred hcCCHHHHHHHHHHHHhh-----CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 395 LRKEYDEAEHLFEAILTL-----SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l-----~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
.+|+|++|+..+++++.+ .|+++. ....+..+|.+|..+|+|++|+.++ ++++.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~---~~~~~~~L~~~y~~~g~~~eA~~~~------------------~~~L~ 357 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIY---QLKVLDCAMDACINLGLLEEALFYG------------------TRTME 357 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHH---HHHHHHHHHHHHHHHTCHHHHHHHH------------------HHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchH---HHHHHHHHHHHHHhhccHHHHHHHH------------------HHHHH
Confidence 345999999999999975 355542 2467889999999999999999999 55554
Q ss_pred h--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHH
Q 004336 470 S--------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-----AASDHE---RLVYEGWILY 520 (760)
Q Consensus 470 ~--------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-----~p~~~~---a~~~Lg~i~~ 520 (760)
. +|.-+..++++|.+|..+|++++|+.+|++|+++ .|+++. .+.+|+.+..
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 3 2555677889999999999999999999999875 455554 3444555443
No 249
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.88 E-value=0.00012 Score=63.62 Aligned_cols=76 Identities=9% Similarity=-0.062 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-------APKGVLYFRQSLLLLRLNCPEAAMR 496 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~Ai~ 496 (760)
.-.+.+|..+...|+|..|+.|+ ++++... +..+.++..+|.++.++|+++.|+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~------------------~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~ 67 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWM------------------EQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHH------------------HHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHH
Confidence 56778999999999999999999 7777643 4568899999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHH
Q 004336 497 SLQLARQHAASDHERLVYEGW 517 (760)
Q Consensus 497 ~l~kal~~~p~~~~a~~~Lg~ 517 (760)
.+++++++.|++..+..+++.
T Consensus 68 ~~~~al~l~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 68 LTKKLLELDPEHQRANGNLKY 88 (104)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHhhHHH
Confidence 999999999999999888763
No 250
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.68 E-value=0.0012 Score=74.26 Aligned_cols=157 Identities=11% Similarity=0.004 Sum_probs=127.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHhh--cCChHHH
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTS---------HCEEGLRKAEESIQM--KRSFEAF 545 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~-p~~~~a~~~Lg~i~~~~g---------~~eeAl~~~~~al~l--~p~~~a~ 545 (760)
+...-..+.+.|+.++|++.|+++.+.. +-+...|..+-.++...+ ..++|...|++.... .|+...|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4445567889999999999999998764 234566666666665443 378999999988764 5666888
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc----cH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cch-HH
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL----RK-GQALNNLGSVYVDCGQLDLAADCYSNALKI--RHT-RA 617 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l----~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~--~~~-~a 617 (760)
..+...+... +.+++|.+.+.+.. .+ ...|+.+-..|.+.|+.++|.+.|++..+. .|+ ..
T Consensus 109 n~lI~~~~~~-----------g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 109 TNGARLAVAK-----------DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HHHHHHHHHH-----------TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 8888888888 89999999998773 33 778999999999999999999999999874 455 78
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004336 618 HQGLARVHFLKNNKTTAYEEMTKLIKKA 645 (760)
Q Consensus 618 ~~~La~~~~~~g~~~~A~~~l~~al~~~ 645 (760)
+..+...+.+.|+.++|.+.+++.-+..
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999987654
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.62 E-value=0.00034 Score=62.39 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-CCcH--HHHHHHHHHHHcCCHHHHHHHH
Q 004336 662 ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE---AIAELSRAIAFK-ADLH--LLHLRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 662 ~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~e---Ai~~l~kal~~~-p~~~--~~~l~a~~~~~~g~~~~A~~~~ 735 (760)
..+...|.+....++....+.+++|+++....+..+ ++..++..+... |... .+++.|..+.++|+|++|++++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455667777888888899999999999999988777 999999988865 4222 4456799999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHhhc
Q 004336 736 RAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 736 ~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
+.+|+.+|+|..+..+...+.+
T Consensus 98 ~~lL~~eP~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKELERLIDK 119 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999988776653
No 252
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.62 E-value=0.0071 Score=67.95 Aligned_cols=155 Identities=10% Similarity=0.037 Sum_probs=119.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhhC--CCCcchhchHHHHHHHHHHHHHcc---------CHHHHHHHHhhhccccccCCcC
Q 004336 391 CVRLLRKEYDEAEHLFEAILTLS--PDYRMFEGRVAASQLHMLVREHID---------NWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 391 ~~~l~~g~~~eA~~~~~~aL~l~--P~~~~~~~~~~a~~~lg~l~~~~g---------~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
..+.+.|++++|+.+|++..... |+. ..+..+-.++...+ ..+.|..++
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~-------~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf------------- 93 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQ-------YHYNVLLYVCSLAEAATESSPNPGLSRGFDIF------------- 93 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCH-------HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHH-------------
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHHhCCchhhhhhcchHHHHHHHH-------------
Confidence 34567789999999999988753 443 45554444443333 356677777
Q ss_pred cHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 460 SLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 460 sl~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.++.... +-+...|..+-..|.+.|++++|.+.|++..+.. .-+...|..+-..|...|+.++|...|++..+
T Consensus 94 -----~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 94 -----KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp -----HHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666554 3467788889999999999999999999988763 33677888888999999999999999998876
Q ss_pred h--cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 538 M--KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 538 l--~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
. .|+. ..|..+-..|.+.|+.++|.+.+++.-+
T Consensus 169 ~G~~Pd~-----------------------------------------~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 169 SEVVPEE-----------------------------------------PELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp TTCCCCH-----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCH-----------------------------------------HHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 4 3444 6788888889999999999999998876
No 253
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.28 E-value=0.0014 Score=58.50 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=74.1
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEA---AMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~---Ai~~l~kal~~~-p-~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
|.+.+..++....+.|++|.++.+..+... ++..++..+..+ | ..-+.+++||..+++.|+|++|..+++..+++
T Consensus 24 y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 24 FQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 366777778899999999999999998887 999999988876 5 56789999999999999999999999999999
Q ss_pred cCCh-HHHHHH
Q 004336 539 KRSF-EAFFLK 548 (760)
Q Consensus 539 ~p~~-~a~~~l 548 (760)
.|++ .+....
T Consensus 104 eP~n~QA~~Lk 114 (126)
T 1nzn_A 104 EPQNNQAKELE 114 (126)
T ss_dssp CTTCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 9999 544433
No 254
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.09 E-value=0.00078 Score=64.90 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=75.4
Q ss_pred EEEEecCeEeehhHHHHhcCCH-HHHhhccCC--CC--CCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNGS--FM--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~-yf~amf~~~--~~--e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~~ 257 (760)
|+|-|||..|..-+..|....+ +|..||.++ +. -....++-| +-+|..++.|++|..||+|. ++.+ .+..
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI---DRDP~~F~~ILnyLRtG~L~-lP~~~~~~~ 89 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI---DRDPTYFGPVLNYLRHGKLV-INKDLAEEG 89 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE---CSCSTTHHHHHHHHHHSCCC-CCTTSCHHH
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe---cCChHHHHHHHHHhcCCccC-CCCCCCHHH
Confidence 6789999999999999998754 789999864 21 113456767 57999999999999999997 6544 3478
Q ss_pred HHHHHhhhChHhHHHHHHHHHHh
Q 004336 258 ILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 258 ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
++.-|..|+++.|++.|...+..
T Consensus 90 l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 90 VLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHHHHHHHHHHHHH
Confidence 99999999999999999988864
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.91 E-value=0.016 Score=52.39 Aligned_cols=82 Identities=15% Similarity=-0.006 Sum_probs=70.2
Q ss_pred CCChHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCcH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 676 PLRVYPYRYRAAVLMDSHKE---NEAIAELSRAIAFKADLH--LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 676 p~~~~~~~~La~~~~~~g~~---~eAi~~l~kal~~~p~~~--~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
.-...+.+++|+++.+..+. .+++..++..+...|... .+++.|..+.++|+|++|.++.+..|+.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 55678899999999998865 479999999999888654 5557799999999999999999999999999999998
Q ss_pred HHHHhhc
Q 004336 751 LHSRVYS 757 (760)
Q Consensus 751 ~~~r~~~ 757 (760)
+...+.+
T Consensus 116 Lk~~Ie~ 122 (144)
T 1y8m_A 116 LKSMVED 122 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776653
No 256
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.83 E-value=0.0084 Score=54.67 Aligned_cols=124 Identities=14% Similarity=0.053 Sum_probs=89.6
Q ss_pred HhhcchHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 004336 610 LKIRHTRAHQGLARVHFLKNNK------TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYR 683 (760)
Q Consensus 610 l~~~~~~a~~~La~~~~~~g~~------~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~ 683 (760)
+.++..+.|..........|+. +.-++.|++++..-|.....+.. .....|.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wr----------------------rYI~LWI 65 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNE----------------------SFARIQV 65 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCH----------------------HHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHH----------------------HHHHHHH
Confidence 3445557888888888888888 77777888888777743211000 1123445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-HHHhh
Q 004336 684 YRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL-HSRVY 756 (760)
Q Consensus 684 ~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~-~~r~~ 756 (760)
..|. +...++.++|.+.|+.++........+|+. |.+-.+.|+..+|.+.+.+++.+.|...++++. +..++
T Consensus 66 rYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 66 RFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp HHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred HHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 5553 356689999999999998887777777755 889999999999999999999999999988874 44444
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.60 E-value=0.014 Score=52.04 Aligned_cols=81 Identities=15% Similarity=-0.007 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCcH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004336 677 LRVYPYRYRAAVLMDSHKE---NEAIAELSRAIAFKADLH--LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 677 ~~~~~~~~La~~~~~~g~~---~eAi~~l~kal~~~p~~~--~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~ 751 (760)
-.+.+.+++|+++.+..+. .+++..++..+...|... .+++.|..+.++|+|++|.++.+.+|+.+|+|..+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3567889999999998764 479999999998888543 45577888999999999999999999999999999988
Q ss_pred HHHhhc
Q 004336 752 HSRVYS 757 (760)
Q Consensus 752 ~~r~~~ 757 (760)
...+.+
T Consensus 118 k~~Ie~ 123 (134)
T 3o48_A 118 KSMVED 123 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 258
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.51 E-value=0.053 Score=49.45 Aligned_cols=104 Identities=10% Similarity=0.006 Sum_probs=59.3
Q ss_pred hCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCP------EAAMRSLQLARQHAASD--------HERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~------~~Ai~~l~kal~~~p~~--------~~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
..|.+++.|..........|++ ++-++.|++|+..-|.. ...|...+.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3467777777777776666776 66666777776655432 1223333322 3345666666666666
Q ss_pred HhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 536 IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 536 l~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
+++...+ +.+|...|..-..+|+...|.+.+.+|+...|
T Consensus 87 ~~~hKkF----------------------------------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 87 RANCKKF----------------------------------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCTTB----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhHHH----------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 5554333 45555556666666666666666666666444
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.51 E-value=0.039 Score=49.87 Aligned_cols=76 Identities=14% Similarity=0.051 Sum_probs=66.6
Q ss_pred CCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPE---AAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 546 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~---~Ai~~l~kal~~~p-~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~ 546 (760)
.-.....|++|.++.+..+.+ +++..++..+...| ...+.+++||..+++.|+|++|..+.+..++..|++ .+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 567889999999999987665 79999999999888 467899999999999999999999999999999999 4433
Q ss_pred H
Q 004336 547 L 547 (760)
Q Consensus 547 ~ 547 (760)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.50 E-value=0.012 Score=54.74 Aligned_cols=59 Identities=14% Similarity=-0.113 Sum_probs=44.6
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCc---chhchHHHHHHHHHHHHHccCHHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYR---MFEGRVAASQLHMLVREHIDNWTIADCWL 446 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~---~~~~~~~a~~~lg~l~~~~g~~~~A~~~l 446 (760)
.....++..|.|+.|+.....++....+++ .......++..+|.++...++|..|...+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y 86 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKY 86 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 334445555699999999998777653333 23344578899999999999999999999
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.45 E-value=0.014 Score=54.36 Aligned_cols=111 Identities=12% Similarity=-0.054 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH---HhCCC------cHHHHHHHHHHHHHcCCHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML---ESDAP------KGVLYFRQSLLLLRLNCPEAA 494 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al---~~~p~------~~~~~~~la~~~~~~g~~~~A 494 (760)
.++..-...+...|.|+.|+... ..++ ..+|+ ...+++.+|.+++..++|.+|
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La------------------~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA 82 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLS------------------SLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNA 82 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH------------------HHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHH
Confidence 34455556667888899888776 3333 33343 245788999999999999999
Q ss_pred HHHHHHHHHhC------C-------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 495 MRSLQLARQHA------A-------------------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 495 i~~l~kal~~~------p-------------------~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
...|+++++.. + .+.+..+.++.+|...|++++|+..++..-...........+|
T Consensus 83 ~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~La 162 (167)
T 3ffl_A 83 VSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLA 162 (167)
T ss_dssp HHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHH
Confidence 99999987541 1 1237889999999999999999999887654444445555555
Q ss_pred HHH
Q 004336 550 YAL 552 (760)
Q Consensus 550 ~~l 552 (760)
..|
T Consensus 163 kLy 165 (167)
T 3ffl_A 163 NLY 165 (167)
T ss_dssp HHC
T ss_pred HHh
Confidence 443
No 262
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=96.12 E-value=0.0056 Score=54.62 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=66.5
Q ss_pred eEEEEecCeEeehhHHHHhcCCHHHHhhccCC----CCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHHH
Q 004336 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGS----FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~----~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~~ 257 (760)
=|+|-|||..|..-+..|....+ .||... +......++-| +=+|..++.|++|..||+|. ++.+ .+..
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnflR~G~l~-~p~~~~~~~ 86 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLH-YPRYECISA 86 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE---CSCHHHHHHHHHHHHHSCBC-CCTTSCHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE---cCChHHHHHHHHHHhcCCCC-CCCCcCHHH
Confidence 37889999999999999976533 355431 11123456766 56999999999999999996 6554 4789
Q ss_pred HHHHHhhhChHhH-HHHHHHH
Q 004336 258 ILIFANKFCCERL-KDACDRK 277 (760)
Q Consensus 258 ll~~a~~~~~~~~-~~~c~~~ 277 (760)
++.-|..|+++.+ .+.||.-
T Consensus 87 l~~Ea~fy~i~~l~l~~cC~~ 107 (124)
T 1s1g_A 87 YDDELAFYGILPEIIGDCCYE 107 (124)
T ss_dssp HHHHHHHTTCCGGGBCHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHH
Confidence 9999999999987 4676653
No 263
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.08 E-value=0.39 Score=56.55 Aligned_cols=97 Identities=15% Similarity=0.016 Sum_probs=65.3
Q ss_pred HhcCCHHHHHH-HHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 394 LLRKEYDEAEH-LFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 394 l~~g~~~eA~~-~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
+..+++++|.. .+ ..-|+. ..+..+...+...|.++.|+...
T Consensus 610 ~~~~~~~~a~~~~l----~~i~~~-------~~~~~~~~~l~~~~~~~~a~~~~-------------------------- 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVL----PNVEGK-------DSLTKIARFLEGQEYYEEALNIS-------------------------- 652 (814)
T ss_dssp HHTTCHHHHHHHTG----GGCCCH-------HHHHHHHHHHHHTTCHHHHHHHC--------------------------
T ss_pred HHhCCHHHHHHHHH----hcCCch-------HHHHHHHHHHHhCCChHHheecC--------------------------
Confidence 34668988865 33 111201 12244555667778888877655
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
.++...+ ......|++++|.+..+ ..++...|..+|..+...|+++.|+..|.++
T Consensus 653 ~~~~~~f---~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 653 PDQDQKF---ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCHHHHH---HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcchhe---ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1222222 34577899999988754 3467789999999999999999999999876
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.02 E-value=0.047 Score=48.77 Aligned_cols=74 Identities=15% Similarity=0.040 Sum_probs=64.7
Q ss_pred CcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCP---EAAMRSLQLARQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 546 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~---~~Ai~~l~kal~~~p~-~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~ 546 (760)
-.+.+.|++|.++.+..+. .+++..++..++.+|. ..+.+++||..+++.|+|++|..+.+..+++.|++ .+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3578999999999988765 4799999999998884 57899999999999999999999999999999999 4433
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.94 E-value=0.78 Score=49.27 Aligned_cols=113 Identities=10% Similarity=-0.065 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----c-ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc---CcHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKI----R-HT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR---NNASA 651 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~-~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~---~~~~~ 651 (760)
...-..+|..|+..|+|.+|...+.+.++. + +. +++..-.++|...|++.++...|.++..... ..+..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 335568999999999999999999998872 2 22 7788889999999999999999998765431 11111
Q ss_pred --------HHHHH-hcCCHHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHcCCH
Q 004336 652 --------YEKRS-EYCDRELTRADLEMVTQLDPLR-----VYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 652 --------~~~~~-~~~~~~~A~~~l~kal~l~p~~-----~~~~~~La~~~~~~g~~ 695 (760)
+.... ..+++.+|...|-++....... .....+++.+-.-.++.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 11112 3467777777777765432211 22345555555565553
No 266
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=95.79 E-value=0.0035 Score=54.27 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=66.0
Q ss_pred EEEEecCeEeehhHHHHhcCCHHHHhhccCCC----CCCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSF----MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEI 258 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~yf~amf~~~~----~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~~l 258 (760)
|+|-|||..|...+..|....+ .||...- ......++-| +=+|..++.|++|..||+|. ++.+ .+..+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi---DRdp~~F~~ILnflR~g~l~-~p~~~~~~~l 74 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF---DRDPDIFRHILNFYRTGKLH-YPRHECISAY 74 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE---CSCTTTHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE---eCCcHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 7899999999999999987543 3554411 1123456667 56999999999999999996 6544 47889
Q ss_pred HHHHhhhChHhH-HHHHHHH
Q 004336 259 LIFANKFCCERL-KDACDRK 277 (760)
Q Consensus 259 l~~a~~~~~~~~-~~~c~~~ 277 (760)
+.-|..|+++.+ .+.||..
T Consensus 75 ~~Ea~fy~i~~l~~~~cc~~ 94 (105)
T 1nn7_A 75 DEELAFFGLIPEIIGDCCYE 94 (105)
T ss_dssp HHHHHHHTCCSCCBCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 999999999986 4667644
No 267
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.77 E-value=0.008 Score=52.84 Aligned_cols=88 Identities=11% Similarity=0.175 Sum_probs=67.7
Q ss_pred EEEEecCeEeehhHHHHhcCCH-HHHhhccCCC-CCCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNGSF-MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILI 260 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~-yf~amf~~~~-~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~~ll~ 260 (760)
|+|-|||..|..-+..|....+ .+..||.+.. ......++-| +-+|..++.|++|..||+|. ++.+ .+..++.
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnylR~G~l~-~p~~~~~~~~~~ 82 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF---DRHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE 82 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE---CSCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE---ecChHHHHHHHHHhcCCCCC-CCCcccHHHHHH
Confidence 7889999999999999987744 3566776522 1234557777 57999999999999999996 6553 5788999
Q ss_pred HHhhhChHhHH-HHHH
Q 004336 261 FANKFCCERLK-DACD 275 (760)
Q Consensus 261 ~a~~~~~~~~~-~~c~ 275 (760)
-|..|+++... ..||
T Consensus 83 Ea~fy~i~~~~l~~CC 98 (115)
T 3kvt_A 83 ELEFWGLDSNQVEPCC 98 (115)
T ss_dssp HHHHHTCCGGGBCGGG
T ss_pred HHHHhCCChHHHHHHH
Confidence 99999988654 3344
No 268
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.59 E-value=1.1 Score=52.65 Aligned_cols=100 Identities=21% Similarity=0.167 Sum_probs=64.2
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcc
Q 004336 484 LLLRLNCPEAAMR-SLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCS 562 (760)
Q Consensus 484 ~~~~~g~~~~Ai~-~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~ 562 (760)
.....+++++|.+ .+. .-|+ ...+..+...+...|.+++|++..+. ....+.++ ..
T Consensus 608 ~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~~~f~~~---l~-------- 664 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISPD-------QDQKFELA---LK-------- 664 (814)
T ss_dssp HHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCCC-------HHHHHHHH---HH--------
T ss_pred HHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCCC-------cchheehh---hh--------
Confidence 3356788888876 431 1110 22235666777888998888765531 11122222 11
Q ss_pred hhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 563 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 563 ~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
.+++++|.+.++.. .....|..+|..+.+.++++.|+.+|.++-
T Consensus 665 ---~~~~~~A~~~~~~~-~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 665 ---VGQLTLARDLLTDE-SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp ---HTCHHHHHHHHTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ---cCCHHHHHHHHHhh-CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 26777777776544 235788999999999999999999998863
No 269
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.48 E-value=1.6 Score=40.45 Aligned_cols=113 Identities=21% Similarity=0.168 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
+|+.++-+-.-.+...|++ ..+++..+.-.|.+..++-++ ..-+...+
T Consensus 17 dYdt~~fLsa~L~~~~~eY---------~lL~~I~LyyngEY~R~Lf~L-----------------------~~lNT~Ts 64 (242)
T 3kae_A 17 DYETAIFLAACLLPCKPEY---------RMLMSIVLYLNGEYTRALFHL-----------------------HKLNTCTS 64 (242)
T ss_dssp CHHHHHHHHHHHC----CT---------HHHHHHHHHHTTCHHHHHHHH-----------------------HTCCBHHH
T ss_pred cccHHHHHHHHHccCChHH---------HhhhhhhhhhcchHhHHHHHH-----------------------HhcchHHH
Confidence 7777654433333333433 456788888899999988777 22455777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------CCCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQH-----------------AASDHER-LVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~-----------------~p~~~~a-~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.+..+.+|...+++..|+..++..+.- +|.+.+. +..+|.++.+.|+.+||+.++.......
T Consensus 65 ~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 65 KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 888899999999999999999999832 2344444 4567999999999999999999999998
Q ss_pred CCh
Q 004336 540 RSF 542 (760)
Q Consensus 540 p~~ 542 (760)
|-+
T Consensus 145 ~lf 147 (242)
T 3kae_A 145 FLF 147 (242)
T ss_dssp CCH
T ss_pred ccc
Confidence 877
No 270
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.1 Score=60.73 Aligned_cols=113 Identities=14% Similarity=-0.009 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHH--Hc-cCHHHHHHHHhhhccccccCCcCcHHHHHHHHH-----
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVRE--HI-DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE----- 469 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~--~~-g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~----- 469 (760)
.++.|+..|++....+|... .++..+.+.. .. .+--+|+..+ .+.+.
T Consensus 264 ~~~~a~~~le~L~~~~p~~~-------~~~~~~~i~~~~~~~~~Ev~av~ll------------------~~~l~~~~~~ 318 (754)
T 4gns_B 264 LVDFTIDYLKGLTKKDPIHD-------IYYKTAMITILDHIETKELDMITIL------------------NETLDPLLSL 318 (754)
T ss_dssp GHHHHHHHHHHHHHHCGGGH-------HHHHHHHHHHHTTCGGGHHHHHHHH------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCchh-------HHHHHHHHHHHHHhhhhhHHHHHHH------------------HHHHHHhhhh
Confidence 36789999999999998773 3333333222 11 2223455554 33332
Q ss_pred ---hC----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 470 ---SD----------APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 470 ---~~----------p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
.. |....++..++..+...|+++-|+++.++|+...|.+...|+.|+.+|..+|+|+.|+-.++..
T Consensus 319 ~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 319 LNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11 2224466778888999999999999999999999999999999999999999999999877654
No 271
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=95.37 E-value=0.0078 Score=54.82 Aligned_cols=87 Identities=11% Similarity=0.103 Sum_probs=66.0
Q ss_pred eEEEEecCeEeehhHHHHhcCCHHHHhhccCCCC----CCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHHH
Q 004336 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~----e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~~ 257 (760)
=|+|-|||..|..-+..|.... ..||...-+ .....++-| +=+|..++.|++|..||+|. ++.+ .+..
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFi---DRdp~~F~~ILnflR~G~l~-~p~~~~~~~ 108 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLH-YPRYECISA 108 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEE---CSCHHHHHHHHHHHHHSSBC-CCTTSCHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEE---eCCcHHHHHHHHHHhcCCcC-CCCCcCHHH
Confidence 4788999999999999998653 345544111 123456777 56999999999999999996 6544 4889
Q ss_pred HHHHHhhhChHhH-HHHHHH
Q 004336 258 ILIFANKFCCERL-KDACDR 276 (760)
Q Consensus 258 ll~~a~~~~~~~~-~~~c~~ 276 (760)
+++-|..|+++.+ +..||.
T Consensus 109 l~eEa~fy~i~~l~l~~CC~ 128 (140)
T 2nz0_B 109 YDDELAFYGILPEIIGDCCY 128 (140)
T ss_dssp HHHHHHHHTCCGGGBCTTTH
T ss_pred HHHHHHHcCCChHHHHHHHH
Confidence 9999999999887 466654
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.94 E-value=0.74 Score=49.44 Aligned_cols=192 Identities=11% Similarity=-0.042 Sum_probs=112.3
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHH--HH-HccCHHHHHHHHhhhccccccCCc
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLV--RE-HIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l--~~-~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
+-.+.+.+|.+|...|++++-.+++.......+..+-.. .+-.....+ +. -.+..+.-....
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak---~~k~v~~l~~~~~~~~~~~~~~~~~~------------ 82 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAK---AAKLVRSLVDMFLDMDAGTGIEVQLC------------ 82 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHH---HHHHHHHHHHHHTTSCCCHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHH---HHHHHHHHHHHHhcCCCcHHHHHHHH------------
Confidence 345678899999999999998888876654443332000 111111111 10 011111111111
Q ss_pred CcHHHHHHHHHhC--CCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHH
Q 004336 459 GSLSVIYQMLESD--APKGV----LYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 459 ~sl~~~~~al~~~--p~~~~----~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~------~~~a~~~Lg~i~~~~g~~e 526 (760)
...++-. ..... +-.++|.+|+..|+|.+|.+.+.+.++.-.. -.+++.....+|...|++.
T Consensus 83 ------~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~ 156 (394)
T 3txn_A 83 ------KDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLP 156 (394)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHH
Confidence 2222211 11111 2337888999999999998888888764211 2356667788888999999
Q ss_pred HHHHHHHHHHhhc----CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHH-HcCCHHH
Q 004336 527 EGLRKAEESIQMK----RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV-DCGQLDL 601 (760)
Q Consensus 527 eAl~~~~~al~l~----p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~-~~g~~~e 601 (760)
++...+.++.... ++. .-.+.....-|.++. ..++|.+
T Consensus 157 k~k~~l~~a~~~~~ai~~~p-------------------------------------~i~a~i~~~~Gi~~l~~~rdyk~ 199 (394)
T 3txn_A 157 KARAALTSARTTANAIYCPP-------------------------------------KVQGALDLQSGILHAADERDFKT 199 (394)
T ss_dssp HHHHHHHHHHHHHHHSCCCH-------------------------------------HHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHhhhccCCCCH-------------------------------------HHHHHHHHHhhHHHHHhccCHHH
Confidence 9988888876432 111 000445556688889 8999999
Q ss_pred HHHHHHHHHhh----c-ch--HHHHHHHHHHHHcCCH
Q 004336 602 AADCYSNALKI----R-HT--RAHQGLARVHFLKNNK 631 (760)
Q Consensus 602 A~~~~~~Al~~----~-~~--~a~~~La~~~~~~g~~ 631 (760)
|...|-++++. . +. .+...++.+....++.
T Consensus 200 A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 200 AFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 99999988752 1 11 3444455555555553
No 273
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=94.72 E-value=0.027 Score=48.04 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=61.5
Q ss_pred EEEEecCeEeehhHHHHhcCCH-HHHhhccC-CCCCCccceeEecCCCCCHHHHHHHHhcccc-CccCCCChh-hHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNG-SFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPN-LLLEIL 259 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~-yf~amf~~-~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt-~~~~~~~~~-~v~~ll 259 (760)
|+|-|||..|...+..|...-+ .+..||.+ ........++=| +-+|..++.|++|..| |++. ++.+ .+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi---DRdp~~F~~ILnflR~~G~l~-~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF---DRNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE---CSCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE---cCChHHHHHHHHHHhcCCccc-CCCCCCHHHHH
Confidence 7889999999999999975422 22333321 111124557777 5799999999999999 9996 5433 578899
Q ss_pred HHHhhhChHhHH
Q 004336 260 IFANKFCCERLK 271 (760)
Q Consensus 260 ~~a~~~~~~~~~ 271 (760)
.-|..|+++.+.
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999998754
No 274
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.21 E-value=0.93 Score=48.70 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 587 NNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 587 ~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
...|......|+.+.|...+++|+..
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L 144 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALRE 144 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 33344445567777777777777774
No 275
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.09 E-value=12 Score=42.53 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=129.2
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
...+...+.+++.+.|...+...-...+-... ........++.-....+...++..++ .+
T Consensus 218 ~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~--~~~~~~~~ia~~~~~~~~~~~~~~~~------------------~~ 277 (618)
T 1qsa_A 218 AAVAFASVARQDAENARLMIPSLAQAQQLNED--QIQELRDIVAWRLMGNDVTDEQAKWR------------------DD 277 (618)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHTSCSTTCCHHHHHHH------------------HH
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhhhccCCCHH--HHHHHHHHHHHHHHHcCCChHHHHHH------------------Hh
Confidence 34455566677889999999887654433320 00112222333333334355666666 55
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHH
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 546 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~ 546 (760)
.....+++...-...+ ..++.|+++.|...|+++-..........+.+|..+...|+.++|...|+++..- .++ |-
T Consensus 278 ~~~~~~~~~~~e~~~r-~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~-~~f--Yg 353 (618)
T 1qsa_A 278 AIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGF--YP 353 (618)
T ss_dssp HHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSH--HH
T ss_pred ccccCCChHHHHHHHH-HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCh--HH
Confidence 4444444433334444 4457799999999998765544456788999999999999999999999999863 333 22
Q ss_pred HHHHHHHcccCCCCcc---hhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHH
Q 004336 547 LKAYALADSSQDSSCS---STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLAR 623 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~---~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~ 623 (760)
.++............. ...... +. .......+..+...|....|...+...+...++.-...++.
T Consensus 354 ~lAa~~Lg~~~~~~~~~~~~~~~~~-----------~~-~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~ 421 (618)
T 1qsa_A 354 MVAAQRIGEEYELKIDKAPQNVDSA-----------LT-QGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLAR 421 (618)
T ss_dssp HHHHHHTTCCCCCCCCCCCSCCCCH-----------HH-HSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCChhHHhh-----------hc-cChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 2222211111100000 000000 00 11223456677888999999998888876544455567788
Q ss_pred HHHHcCCHHHHHHHHH
Q 004336 624 VHFLKNNKTTAYEEMT 639 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~ 639 (760)
+....|.++.++....
T Consensus 422 ~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 422 YAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHH
Confidence 8888998888776554
No 276
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.81 E-value=13 Score=40.47 Aligned_cols=198 Identities=9% Similarity=-0.037 Sum_probs=115.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHH
Q 004336 397 KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 476 (760)
Q Consensus 397 g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~ 476 (760)
|++++|++.+-.+-+......+......+...+..++...++|+....++.+....... .-..+.++
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q----lk~ai~~~--------- 96 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ----LKLSIQYM--------- 96 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT----SHHHHHHH---------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh----hHHHHHHH---------
Confidence 37888888775554433222222223367777788888999998887766322221000 00001111
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHh----CC-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 477 LYFRQSLLLL-RLNCPEAAMRSLQLARQH----AA-------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 477 ~~~~la~~~~-~~g~~~~Ai~~l~kal~~----~p-------~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
.+...-|. .....+... ....+.. .. ..+.....|+.++...|++.+|...+.....---..
T Consensus 97 --V~~~~~~l~~~~~~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-- 170 (445)
T 4b4t_P 97 --IQKVMEYLKSSKSLDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-- 170 (445)
T ss_dssp --HHHHHHHHHHHCTTHHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--
T ss_pred --HHHHHHHHhcCCchhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--
Confidence 11111111 112111111 1112211 11 123455789999999999999999988775311000
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----h-cch----
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK----I-RHT---- 615 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~----~-~~~---- 615 (760)
. .. ..+...+.....++...+++.+|...++++.. . .++
T Consensus 171 ----------~-----------~~-----------~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 171 ----------M-----------EM-----------SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp ----------S-----------CH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred ----------c-----------cH-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 0 00 01156777788899999999999999998753 1 222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 645 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~ 645 (760)
..+...|.++...++|.+|...|..+....
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 566778999999999999999999887654
No 277
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.57 E-value=7.4 Score=42.42 Aligned_cols=152 Identities=13% Similarity=0.059 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCc
Q 004336 489 NCPEAAMRSLQLARQH------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSC 561 (760)
Q Consensus 489 g~~~~Ai~~l~kal~~------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~ 561 (760)
|++++|++.+...-+. .+....+...+..++...|+++.....+.-........ .+...+.............
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5567777665433221 23345677777888888888887777665444332222 2221111111100000000
Q ss_pred chhhhhHHHHHHhhhHhh------c--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cch---HHHHHHHHHH
Q 004336 562 SSTVVSLLEDALKCPSDR------L--RKGQALNNLGSVYVDCGQLDLAADCYSNALKI-----RHT---RAHQGLARVH 625 (760)
Q Consensus 562 ~~~~~~~leeAl~~~~~~------l--~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-----~~~---~a~~~La~~~ 625 (760)
.+ .......+...... + ..+.....|+.+|...|++.+|...+...... +.. +.+....++|
T Consensus 110 ~d--~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LD--LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp TH--HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hh--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 00 00000111111111 1 12667788999999999999999999887652 111 6788889999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 004336 626 FLKNNKTTAYEEMTKLI 642 (760)
Q Consensus 626 ~~~g~~~~A~~~l~~al 642 (760)
...+++..|...++++.
T Consensus 188 l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 99999999999988864
No 278
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.23 E-value=4.3 Score=38.14 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTT 633 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~ 633 (760)
...|..+|......|+++-|..+|+++-. +..+..+|...|+.+.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHS------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTC------HHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCC------HHHHHHHHHHhCCHHH
Confidence 46788888888889999999888887633 2234455556666543
No 279
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.04 E-value=1 Score=48.34 Aligned_cols=61 Identities=7% Similarity=-0.101 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
+...++..+...|++.+|+..+++++..+|-+-..+..+-.+++..|+..+|+..|++.-+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456778889999999999999999999999999999999999999999999999988754
No 280
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.51 E-value=22 Score=40.34 Aligned_cols=154 Identities=10% Similarity=-0.081 Sum_probs=93.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---cch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH---HHHHHHHhc
Q 004336 588 NLGSVYVDCGQLDLAADCYSNALKI---RHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA---SAYEKRSEY 658 (760)
Q Consensus 588 ~Lg~~y~~~g~~~eA~~~~~~Al~~---~~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~---~~~~~~~~~ 658 (760)
..+......++.+.|...+....+. ++. .....++.-....+...++...+.+......+.. +........
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHC
Confidence 3445555566888888888776542 222 2333344444444534566666666544333211 111111234
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------C-CcHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK-----------------------A-DLHL 714 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~-----------------------p-~~~~ 714 (760)
++++.|...|.......+......+.+|.++...|+.++|...|+++.... + ....
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~ 378 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSA 378 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCH
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhh
Confidence 888888888877655444567778889999999999999999888876310 0 0001
Q ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004336 715 -----LHLRAAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 715 -----~~l~a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
..-++..+...|....|...+..++..
T Consensus 379 ~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 112355666779999999888887754
No 281
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.49 E-value=1.9 Score=50.13 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 641 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~a 641 (760)
...+...+..+...|+|+-|+.+.++|+...|. ..|+.|+.+|..+|+++.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 346666788888999999999999999998887 99999999999999999999888774
No 282
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.37 E-value=1.9 Score=43.29 Aligned_cols=59 Identities=15% Similarity=-0.008 Sum_probs=56.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+++.|.+++|++.....++.+|.+++....|-.++.-.|+++.|.+-++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45678999999999999999999999999999999999999999999999999999998
No 283
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.16 E-value=9.4 Score=35.36 Aligned_cols=44 Identities=9% Similarity=-0.066 Sum_probs=31.0
Q ss_pred HHHHHHHcCCCcHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004336 701 ELSRAIAFKADLHLLHLR--AAFHEHTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 701 ~l~kal~~~p~~~~~~l~--a~~~~~~g~~~~A~~~~~~aL~l~P~ 744 (760)
..++-...-|....+... +..+..+|-.++....|...-..||.
T Consensus 195 ~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 195 LVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 344445566776665533 66777788888888888888888875
No 284
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.20 E-value=1.6 Score=48.40 Aligned_cols=79 Identities=15% Similarity=-0.039 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcc
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 555 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~ 555 (760)
.+..+|.+..-...++.|..+|.+|..+.|++...+..||.+....|+.-+|+-+|-+++.....+ .+..++...+...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 556789999999999999999999999999999999999999999999999999999999876556 7788887776653
No 285
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.02 E-value=5.1 Score=40.22 Aligned_cols=118 Identities=12% Similarity=-0.025 Sum_probs=80.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
.+..|+.++|+......++.+|.+. .....+-.++.-.|+|+.|..-+ +...+++|
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da------~~R~~LfqLLcv~G~w~RA~~QL------------------~~~a~l~p 62 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDA------SLRSSFIELLCIDGDFERADEQL------------------MQSIKLFP 62 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCH------HHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHCG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCH------HHHHHHHHHHHhcCCHHHHHHHH------------------HHHHHhCc
Confidence 4567799999999999999999995 88888999999999999999998 88888888
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLA-RQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~ka-l~~--------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.....-..+-.+. .|+ .++.. +.- .|........-+......|+.++|...-.++++..|..
T Consensus 63 ~~~~~a~~yr~lI-------~aE-~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 63 EYLPGASQLRHLV-------KAA-QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp GGHHHHHHHHHHH-------HHH-HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred hhhHHHHHHHHHH-------HHH-HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 7644321111100 011 11111 110 11122233344566677899999999999998876654
No 286
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.00 E-value=15 Score=34.41 Aligned_cols=55 Identities=9% Similarity=-0.078 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
+++..|.++ .+.|+++.|.+..+.. ++...|..||......|+++-|...|+++-
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 445555554 6789999999987764 568899999999999999999999998763
No 287
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=88.75 E-value=2 Score=47.61 Aligned_cols=80 Identities=6% Similarity=-0.151 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..+..+|.+......++.|..|+ .++....|+++..+..+|.+....|+.-+|+-+|-+++.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y------------------~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYY------------------RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHH------------------HHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 35677999999999999999999 999999999999999999999999999999999999998
Q ss_pred hCCCcHHHHHHHHHHHHH
Q 004336 504 HAASDHERLVYEGWILYD 521 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~ 521 (760)
.....+.+..++..++..
T Consensus 215 ~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 215 VKFPFPAASTNLQKALSK 232 (497)
T ss_dssp SSBCCHHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHHHHH
Confidence 877788899998887754
No 288
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.59 E-value=0.21 Score=42.94 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhc
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~ 282 (760)
++++|+..++.+|+.|+|+.|++.|..|+..+.
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF 40 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHL 40 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999988765
No 289
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=88.46 E-value=6.8 Score=46.88 Aligned_cols=106 Identities=7% Similarity=-0.167 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----hcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHH
Q 004336 509 HERLVYEGWILYDTSHCEEGLRKAEESIQ-----MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 583 (760)
Q Consensus 509 ~~a~~~Lg~i~~~~g~~eeAl~~~~~al~-----l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~ 583 (760)
...+..+-..|.+.|+.++|...|++..+ ..|+ .
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-----------------------------------------v 165 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-----------------------------------------L 165 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-----------------------------------------H
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-----------------------------------------H
Confidence 34677788899999999999999876543 2344 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cch-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcc-CcHHHHHHH
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHT-RAHQGLARVHFLKNN-KTTAYEEMTKLIKKAR-NNASAYEKR 655 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~--~~~-~a~~~La~~~~~~g~-~~~A~~~l~~al~~~~-~~~~~~~~~ 655 (760)
..|+.+-..|.+.|+.++|.+.|++..+. .|+ .++..+...+.+.|+ .++|.+.+++..+..- .+...|...
T Consensus 166 vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~l 242 (1134)
T 3spa_A 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSC
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccc
Confidence 78888888999999999999999998873 455 677778888888887 4788899999887754 444445433
No 290
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.43 E-value=0.15 Score=43.93 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=40.3
Q ss_pred hhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhh
Q 004336 280 SLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVE 326 (760)
Q Consensus 280 ~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~ 326 (760)
.++ +++||++++.+|..++++.|...|.+|+.++|+.....++|..
T Consensus 6 ~~L-~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~ 51 (105)
T 2eqx_A 6 SGV-QVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLH 51 (105)
T ss_dssp CCC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhh
Confidence 455 7899999999999999999999999999999998777666653
No 291
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.31 E-value=3.5 Score=44.81 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=62.7
Q ss_pred hhhHHHHHHhhhHhh-c---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cch-HHHHHHHHHHHHcCCHHHHH
Q 004336 565 VVSLLEDALKCPSDR-L---RKGQALNNLGSVYVDCGQLDLAADCYSNALKI----RHT-RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 565 ~~~~leeAl~~~~~~-l---~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~~~-~a~~~La~~~~~~g~~~~A~ 635 (760)
.+..+++.+..+.+. . ....++..+|..|.+.|++++|.++|.++... ++. +.+..+.+++...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 445666666555442 1 11567888999999999999999999998873 222 88899999999999999999
Q ss_pred HHHHHHHHhc
Q 004336 636 EEMTKLIKKA 645 (760)
Q Consensus 636 ~~l~~al~~~ 645 (760)
..+.++-...
T Consensus 189 ~~~~ka~~~~ 198 (429)
T 4b4t_R 189 EKLEAVNSMI 198 (429)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999876543
No 292
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=85.48 E-value=9.6 Score=45.63 Aligned_cols=80 Identities=5% Similarity=-0.188 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--cCChHHHHHHH
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQH----AASDHERLVYEGWILYDTSHCEEGLRKAEESIQM--KRSFEAFFLKA 549 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~----~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l--~p~~~a~~~la 549 (760)
..+..+-..|.+.|+.++|...|+...+. -.-+...|..+-..|...|+.++|...|++..+. .|+...|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45677888999999999999999775432 2346788999999999999999999999999764 57665555554
Q ss_pred HHHHcc
Q 004336 550 YALADS 555 (760)
Q Consensus 550 ~~l~~~ 555 (760)
..+...
T Consensus 208 ~glcK~ 213 (1134)
T 3spa_A 208 QCMGRQ 213 (1134)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 444443
No 293
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.13 E-value=0.82 Score=50.51 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=61.2
Q ss_pred HHHHcCCHHHHHHHHHHHHH-----------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004336 484 LLLRLNCPEAAMRSLQLARQ-----------HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 552 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~-----------~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l 552 (760)
.+...+++++|.++-...+. +++-.+..|++++.++...|+..+..........+.|..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~L---------- 214 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTM---------- 214 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHH----------
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHH----------
Confidence 45567788888777655441 133345678888888888887776654444444332222
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhh------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---h----HHHH
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDR------LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH---T----RAHQ 619 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~------l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~---~----~a~~ 619 (760)
+..+..+ ...+..++.+-..|...+.|++|.....++.-+.+ + ..++
T Consensus 215 --------------------l~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~Y 274 (523)
T 4b4t_S 215 --------------------MKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFF 274 (523)
T ss_dssp --------------------HHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHH
T ss_pred --------------------HHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHH
Confidence 0111111 11167788888999999999999999999855422 1 6678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccC
Q 004336 620 GLARVHFLKNNKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 620 ~La~~~~~~g~~~~A~~~l~~al~~~~~ 647 (760)
.+|+++..+++|.+|.+.+..++...|.
T Consensus 275 Y~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 275 YLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 8999999999999999999999988874
No 294
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.97 E-value=25 Score=43.24 Aligned_cols=140 Identities=10% Similarity=-0.036 Sum_probs=89.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc-CChHHHHHHHHHHHcccCC
Q 004336 480 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQD 558 (760)
Q Consensus 480 ~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~-p~~~a~~~la~~l~~~~~~ 558 (760)
.+...+...|.++-|.+ .+...|.++...+.+|.++...|++++|...|+++-..- .+..
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~--------------- 877 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS--------------- 877 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCC---------------
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccch---------------
Confidence 34455667777776654 345667788888999999999999999999999874321 1110
Q ss_pred CCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-------HHHHHHHHHHHHcCCH
Q 004336 559 SSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-------RAHQGLARVHFLKNNK 631 (760)
Q Consensus 559 ~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-------~a~~~La~~~~~~g~~ 631 (760)
.......+..........-.....|..+..++.+.+.++.+++.-+.|++..+. ..|.++-..+...|+|
T Consensus 878 ---l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y 954 (1139)
T 4fhn_B 878 ---QFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF 954 (1139)
T ss_dssp ---SCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred ---hhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH
Confidence 000000111111000000001456677778888889999999999999874221 3677778888889999
Q ss_pred HHHHHHHHHH
Q 004336 632 TTAYEEMTKL 641 (760)
Q Consensus 632 ~~A~~~l~~a 641 (760)
++|...+...
T Consensus 955 e~Ay~aL~~~ 964 (1139)
T 4fhn_B 955 DAAHVALMVL 964 (1139)
T ss_dssp GGGGHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9998887643
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.41 E-value=18 Score=39.84 Aligned_cols=67 Identities=10% Similarity=-0.100 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~-------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+.++..+-..|...+.+++|.....++. .|.. ...++++|.++..+++|.+|...+..|+...|..
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 35567777889999999999999999884 3322 3457889999999999999999999999887654
No 296
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.87 E-value=3.2 Score=45.12 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA---SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p---~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
-..++..+|..|.+.|++++|.+.|.++..... ...+.+.....++...+++..+...++++-......
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-------- 201 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-------- 201 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--------
Confidence 345788999999999999999999999987643 345778888889999999999999999886543221
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
+.++ .........|.++...++|.+|...|-.++.
T Consensus 202 ----------------~d~~----------~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 202 ----------------GDWE----------RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp ----------------CCTH----------HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred ----------------CCHH----------HHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 0000 0023344457777888999999999988776
No 297
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.11 E-value=61 Score=33.22 Aligned_cols=151 Identities=13% Similarity=-0.016 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hcch----HHHHHHHHHHHHcCCH--HHHHHHHHHHHHhccC-cHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALK----IRHT----RAHQGLARVHFLKNNK--TTAYEEMTKLIKKARN-NASA 651 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~----~~~~----~a~~~La~~~~~~g~~--~~A~~~l~~al~~~~~-~~~~ 651 (760)
-+.+..+..=|.++++|++|++.+..... .+.. +.-..+..+|.+.+.. ++.+.-+.+++...|. ..+.
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r 112 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNL 112 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchH
Confidence 35566667778888899999888655433 1111 2223333444444322 2223333333333231 1111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH-------H---------H---cCCCc
Q 004336 652 YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRA-------I---------A---FKADL 712 (760)
Q Consensus 652 ~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ka-------l---------~---~~p~~ 712 (760)
..-. .+|+..-.+.-...-.++..+..+|..|.+.|++.+|..+|-.. + + -.|..
T Consensus 113 ~~fi------~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 113 KDVI------TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp HHHH------HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHH------HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 1000 22222222221222357889999999999999999999977311 0 1 11222
Q ss_pred HHHH-HHHH-HHHHcCCHHHHHHHHHHHH
Q 004336 713 HLLH-LRAA-FHEHTGDVLGALRDCRAAL 739 (760)
Q Consensus 713 ~~~~-l~a~-~~~~~g~~~~A~~~~~~aL 739 (760)
..+. .++. -|...|+...|...+....
T Consensus 187 ~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 187 VAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2333 3433 4567799999988877654
No 298
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.64 E-value=36 Score=41.78 Aligned_cols=128 Identities=9% Similarity=-0.043 Sum_probs=84.9
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CCCcHHHHHHHHHHHHHCCCH
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-----------------------AASDHERLVYEGWILYDTSHC 525 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-----------------------~p~~~~a~~~Lg~i~~~~g~~ 525 (760)
...|.++...|.+|.++...|++++|..+|+++-.- ....+..|..+..++...|.+
T Consensus 836 ~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~ 915 (1139)
T 4fhn_B 836 GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAY 915 (1139)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCC
T ss_pred hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCH
Confidence 445777888899999999999999999999887321 011224455667777788888
Q ss_pred HHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHH
Q 004336 526 EEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAAD 604 (760)
Q Consensus 526 eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~ 604 (760)
+.+++..+.|++..+.. +. -+...|.++=..+.+.|+|++|..
T Consensus 916 ~~vi~fa~lAi~~~~~~~~~------------------------------------~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 916 IDALEFSLLADASKETDDED------------------------------------LSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp HHHHHHHHHHHHHCCSCCHH------------------------------------HHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred HHHHHHHHHHHHhccCCChh------------------------------------hHHHHHHHHHHHHHhhCCHHHHHH
Confidence 88888888887654332 00 003356666777888899999887
Q ss_pred HHHHHHhhcc-hHHHHHHHHHHHHcCCHH
Q 004336 605 CYSNALKIRH-TRAHQGLARVHFLKNNKT 632 (760)
Q Consensus 605 ~~~~Al~~~~-~~a~~~La~~~~~~g~~~ 632 (760)
.+...-...- ...+..+....+..|+.+
T Consensus 960 aL~~~pd~~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 960 ALMVLSTTPLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHCCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhCCChh
Confidence 7754422111 155555666666666553
No 299
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=70.89 E-value=1.8e+02 Score=34.65 Aligned_cols=135 Identities=10% Similarity=-0.011 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
.|.+..+...+|.++ .|+.++++..+.+-+..... .....+..+++.+|.++...+ +++..++
T Consensus 372 ~~~k~sA~aSLGlIh--~g~~~~gl~~L~~yL~~~~s-~~~~ik~GAllaLGli~ag~~--~~~~~lL------------ 434 (963)
T 4ady_A 372 NWAKFTATASLGVIH--KGNLLEGKKVMAPYLPGSRA-SSRFIKGGSLYGLGLIYAGFG--RDTTDYL------------ 434 (963)
T ss_dssp THHHHHHHHHHHHHT--SSCTTTHHHHHTTTSTTSCC-SCHHHHHHHHHHHHHHTTTTT--HHHHHHH------------
T ss_pred hHHHHHHHHHhhhhc--cCchHHHHHHHHHhccccCC-CcHHHHHHHHHHHHHhcCCCc--HHHHHHH------------
Confidence 455666677777544 45666777777665542201 122334567888888876655 3577766
Q ss_pred CcHHHHHHHHHhCC---C---c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHCCCHH
Q 004336 459 GSLSVIYQMLESDA---P---K----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH--ERLVYEGWILYDTSHCE 526 (760)
Q Consensus 459 ~sl~~~~~al~~~p---~---~----~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~--~a~~~Lg~i~~~~g~~e 526 (760)
...+..+. . + ..+-..+|.++...++ +++.+.+...+..+.... .+-+.+|.++.-.|+-+
T Consensus 435 ------~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ 507 (963)
T 4ady_A 435 ------KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE 507 (963)
T ss_dssp ------HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred ------HHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH
Confidence 44443322 0 1 1344567777776665 467777777776443221 34456788888888876
Q ss_pred HHHHHHHHHHh
Q 004336 527 EGLRKAEESIQ 537 (760)
Q Consensus 527 eAl~~~~~al~ 537 (760)
-....+..+.+
T Consensus 508 ai~~LL~~~~e 518 (963)
T 4ady_A 508 AIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 65555555554
No 300
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.76 E-value=2.2e+02 Score=33.83 Aligned_cols=137 Identities=14% Similarity=-0.003 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCC---C--cchhchHHHHHHHHHHHHHccCHHHHHHHHhhhcccc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPD---Y--RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWS 453 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~---~--~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~ 453 (760)
..-++-+.+.+|.++...++ ++...+...+..+.. . ... .+..+-..+|.++.-.++- ++...+
T Consensus 409 ~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~-ir~gAaLGLGla~~GS~~e-ev~e~L------- 477 (963)
T 4ady_A 409 RFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDV-LLHGASLGIGLAAMGSANI-EVYEAL------- 477 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHH-HHHHHHHHHHHHSTTCCCH-HHHHHH-------
T ss_pred HHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHH-HHHHHHHHHHHHhcCCCCH-HHHHHH-------
Confidence 46688899999977777664 688888887765431 0 011 1124556788877766654 344444
Q ss_pred ccCCcCcHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 004336 454 SVDDIGSLSVIYQMLESDAPK--GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 531 (760)
Q Consensus 454 ~~~d~~sl~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~ 531 (760)
...+..+... ..+-+.+|.++...|+-+.....+..+.+...+.......+|..+...|+.+.+-..
T Consensus 478 -----------~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 478 -----------KEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp -----------HHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred -----------HHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 4444432211 245667888999999887777777766664443333444556666678888777666
Q ss_pred HHHHHh
Q 004336 532 AEESIQ 537 (760)
Q Consensus 532 ~~~al~ 537 (760)
.+....
T Consensus 547 i~~L~~ 552 (963)
T 4ady_A 547 ITKMLA 552 (963)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665543
No 301
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=64.18 E-value=5.2 Score=36.93 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=31.5
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCH
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVASR 285 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~ 285 (760)
++.+|+.+++..|..++++.|++.|..|+..++..+
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v 167 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHATDV 167 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999876443
No 302
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=59.61 E-value=8.3 Score=42.87 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=59.8
Q ss_pred EEEEecCeEeehhHHHHhcCCHHHHhhccC-----CCCCCccceeEecCCCCCHHHHHHHHhcccc-CccCCCChh-hHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNG-----SFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPN-LLL 256 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~yf~amf~~-----~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt-~~~~~~~~~-~v~ 256 (760)
|+|-|||..|...+..|...- ..|+.. ........++-| +=+|..++.|++|..| |++. ++.+ .+.
T Consensus 54 v~lNVgG~~f~t~~~tL~~~p---~s~l~~~~~~~~~~~~~~~~~f~---DR~~~~F~~IL~~~r~~g~l~-~p~~~~~~ 126 (514)
T 2r9r_B 54 VVINISGLRFETQLKTLAQFP---ETLLGDPKKRMRYFDPLRNEYFF---DRNRPSFDAILYYYQSGGRLR-RPVNVPLD 126 (514)
T ss_dssp EEEEETTEEEEEEHHHHTTST---TSTTTCHHHHGGGEETTTTEEEE---CSCHHHHHHHHHHHHHTSCCC-CCTTSCHH
T ss_pred EEEEeCCEEEEecHHHHhcCC---CCcccccccCCcccCCCCCCEEE---cCChHHHHHHHHHHhcCCccc-cCCcccHH
Confidence 678899999999999997542 233322 111234567777 5799999999999999 9996 5444 466
Q ss_pred HHHHHHhhhChHhHH
Q 004336 257 EILIFANKFCCERLK 271 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~ 271 (760)
.+++-|..|+++...
T Consensus 127 ~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 127 IFSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHHTTCCHHH
T ss_pred HHHHHHHhcCCCHHH
Confidence 788889999997643
No 303
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=57.82 E-value=7.1 Score=40.16 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=31.5
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCH
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVASR 285 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~ 285 (760)
++.+|+.++|.+|.+++++.|++.|-.|++.++..+
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v 307 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHATDV 307 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999876543
No 304
>2q9r_A Protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.91A {Shewanella baltica}
Probab=53.06 E-value=5.1 Score=38.22 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=31.3
Q ss_pred hccchhHHHHHHHHHhhcccccccchhhhhhhh
Q 004336 95 KGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWL 127 (760)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (760)
-|.||++.+|+.|-..|++-+.-+.||=|..||
T Consensus 42 tef~d~~~~r~~LdlvWe~l~~k~~kinfe~qL 74 (200)
T 2q9r_A 42 CEFGDPAVLSTALELLWQSLYDPKLKFNIDVHL 74 (200)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHCTTCCCCHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHhccchhcCHHHHH
Confidence 589999999999999999999999999999888
No 305
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=52.76 E-value=26 Score=27.52 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=18.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 721 FHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 721 ~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
.+...|++++|...|-+|+...|+-.+.+..|.+
T Consensus 26 ~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 26 ELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444455555555555555555555555555544
No 306
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=51.43 E-value=65 Score=28.85 Aligned_cols=60 Identities=10% Similarity=-0.029 Sum_probs=46.2
Q ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 479 FRQSL-LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 479 ~~la~-~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
+.+|. .+..+|+-++-.+.+...+..++-+++.++.+|.+|...|+..+|-+.+.+|-+.
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34444 5567888888877877766667777999999999999999999999999888753
No 307
>3f7c_A Protein of unknown function (DUF416); structural genomics, joint center for structural genomics, J protein structure initiative; HET: CIT; 2.00A {Marinobacter aquaeolei VT8}
Probab=51.24 E-value=8.2 Score=36.80 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=31.2
Q ss_pred hccchhHHHHHHHHHhhcccccccchhhhhhhh
Q 004336 95 KGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWL 127 (760)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (760)
-|.||+|.+|..|-..|+.=+.-..||=|..||
T Consensus 41 tefgd~~~~r~~LdlvWe~L~~k~~kinfe~qL 73 (200)
T 3f7c_A 41 VGLKTGGKMRQLLDLAWDMLQKDVADAAIPQLL 73 (200)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCCCGGGHHHHH
T ss_pred HCCCcHHHHHHHHHHHHHHHhccccccCHHHHH
Confidence 699999999999999999999999999999888
No 308
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=49.00 E-value=0.0062 Score=66.09 Aligned_cols=222 Identities=14% Similarity=0.041 Sum_probs=131.6
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
-+.+.+|..+|.+++..++..+|++.|-++ +++..+...-.+....|++++=+.+++.+-+.-.+...-..+..+
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~a 125 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 125 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 456789999999999999999999988553 344445555566678899999999998887664444223344555
Q ss_pred HHcccCCC-----CcchhhhhHHHHHHhhhHhhccH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHH
Q 004336 552 LADSSQDS-----SCSSTVVSLLEDALKCPSDRLRK--------GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAH 618 (760)
Q Consensus 552 l~~~~~~~-----~~~~~~~~~leeAl~~~~~~l~~--------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~ 618 (760)
|+..+.-. .........-.-+-++|...+-. ..-|..|+.++...|+|..|++.-++| +.+.+|
T Consensus 126 yAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA---ns~ktW 202 (624)
T 3lvg_A 126 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA---NSTRTW 202 (624)
T ss_dssp HHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC---CSSCSH
T ss_pred HHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc---CChhHH
Confidence 55542110 00111111122222333333111 222344666677777777777655544 344667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Q 004336 619 QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEA 698 (760)
Q Consensus 619 ~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eA 698 (760)
-....+....+++.-|.-+--.++-.......+-......|-+++-+..++.++.+..-....+..||.+|.+- +.++-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKl 281 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKM 281 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHH
T ss_pred HHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHH
Confidence 77777777777776665555444433332222222222237778888888888888877888888888777553 33444
Q ss_pred HHHH
Q 004336 699 IAEL 702 (760)
Q Consensus 699 i~~l 702 (760)
.+.+
T Consensus 282 mEHl 285 (624)
T 3lvg_A 282 REHL 285 (624)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 309
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=44.33 E-value=5.5 Score=26.39 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=9.5
Q ss_pred hhhhhhhhhhhhhhhhhh
Q 004336 120 KLVFGAWLKYEKQGEELI 137 (760)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~ 137 (760)
-+.++||+.| ||++.+.
T Consensus 20 GLfv~Ay~Qy-rRg~ql~ 36 (37)
T 1vf5_G 20 GLFYAAYQQY-KRPNELG 36 (37)
T ss_dssp HHTHHHHHHT-CC-----
T ss_pred HHHHHHHHHH-hhccccC
Confidence 3467899999 7888774
No 310
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.62 E-value=2.6e+02 Score=31.75 Aligned_cols=17 Identities=6% Similarity=-0.123 Sum_probs=13.3
Q ss_pred HHHHHHccCHHHHHHHH
Q 004336 430 MLVREHIDNWTIADCWL 446 (760)
Q Consensus 430 g~l~~~~g~~~~A~~~l 446 (760)
-.++.-.|+|+.|+.++
T Consensus 301 f~vLlLtgqFE~AI~~L 317 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYT 317 (661)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 34555689999999988
No 311
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=42.91 E-value=57 Score=31.08 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYR 417 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~ 417 (760)
.+.+.-.|.+|.+++.+++|.+|.+.+..|+...|...
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 45677789999999999999999999999999988764
No 312
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=41.79 E-value=6.8 Score=38.98 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=31.2
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcC
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~ 283 (760)
++++|+..++.+|..++++.|++.|..|+..+..
T Consensus 131 l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~ 164 (256)
T 3hve_A 131 IAAENCIGIRDFALHYCLHHVHYLATEYLETHFR 164 (256)
T ss_dssp CCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999987653
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.63 E-value=2.3e+02 Score=33.72 Aligned_cols=107 Identities=9% Similarity=-0.098 Sum_probs=70.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc--CCh--HHHHHHHHHHHccc
Q 004336 481 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK--RSF--EAFFLKAYALADSS 556 (760)
Q Consensus 481 la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~--p~~--~a~~~la~~l~~~~ 556 (760)
+...+...|.++-|.+ .+..-|.++-.-+.+|.++...|++++|...|+++-..- +.. ........++..
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~-- 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK-- 889 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH--
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc--
Confidence 5566777888876543 556778888888999999999999999999999875321 111 000000111100
Q ss_pred CCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 557 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 557 ~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
.+...--...|..+..++...+-++-+++..+.|+..
T Consensus 890 -------------------~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 -------------------YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp -------------------TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -------------------ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0000001446777888888999999999999999873
No 314
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=35.34 E-value=1.1e+02 Score=27.33 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=34.4
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 505 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~ 505 (760)
...+...+-++..++.+|.+|.+.|+..+|.+.+.+|-+..
T Consensus 115 ~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 115 REILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 55456677889999999999999999999999999997754
No 315
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=33.24 E-value=72 Score=24.99 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Q 004336 683 RYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 683 ~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~ 716 (760)
..+|..+...|++++|...|-+|+...|+...+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4579999999999999999999999999887554
No 316
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=33.10 E-value=30 Score=34.70 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=30.8
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhc
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~ 282 (760)
++++|+..++.+|..++++.|++.|..|+..+.
T Consensus 139 l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f 171 (279)
T 3i3n_A 139 LHLSNCVAIHSLAHMYTLSQLALKAADMIRRNF 171 (279)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTH
T ss_pred CCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999998754
No 317
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=31.69 E-value=44 Score=27.65 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Q 004336 684 YRAAVLMDSHKENEAIAELSRAIAFKADLHLL 715 (760)
Q Consensus 684 ~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~ 715 (760)
.+|..+...|+++.|+.+|-+|+...|+...+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 45666667777777777666666666555433
No 318
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=31.51 E-value=4.4e+02 Score=27.02 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 004336 506 ASDHERLVYEGWILYDTSHCEEGLRKA 532 (760)
Q Consensus 506 p~~~~a~~~Lg~i~~~~g~~eeAl~~~ 532 (760)
-.+++.+..+|..|...+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 467899999999999999999998887
No 319
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=30.45 E-value=57 Score=26.24 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=13.3
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 004336 688 VLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 688 ~~~~~g~~~eAi~~l~kal~ 707 (760)
-.-+.|++++|+..|..+++
T Consensus 28 e~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 28 KADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 33466777777777776664
No 320
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=29.56 E-value=59 Score=26.07 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=12.8
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 004336 689 LMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 689 ~~~~g~~~eAi~~l~kal~ 707 (760)
.-+.|++++|+.+|..+++
T Consensus 21 ~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3466777777777776664
No 321
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=28.85 E-value=90 Score=25.03 Aligned_cols=29 Identities=7% Similarity=-0.041 Sum_probs=16.5
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHh
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILT 411 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~ 411 (760)
|..+...+.-.-..|+|++|+.+|.++++
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33333334344444588888887776654
No 322
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.52 E-value=1.9e+02 Score=26.31 Aligned_cols=58 Identities=16% Similarity=-0.062 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HH-HH----H-H--HHHHHHcCCHHHHHHHHHHHHh
Q 004336 683 RYRAAVLMDSHKENEAIAELSRAIAFKADL--HL-LH----L-R--AAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 683 ~~La~~~~~~g~~~eAi~~l~kal~~~p~~--~~-~~----l-~--a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
+.-|..+++.|+|-+|-+.++.+....+.. .. ++ . . +..+.+.|+...|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345778888999999999999999877655 32 21 2 2 4555667999999999999976
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.60 E-value=1.9e+02 Score=34.54 Aligned_cols=73 Identities=11% Similarity=0.031 Sum_probs=55.5
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--------------------CC--cHHHHHHHHHHHHHCC
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-A--------------------AS--DHERLVYEGWILYDTS 523 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-~--------------------p~--~~~a~~~Lg~i~~~~g 523 (760)
.+.--|.++..-|.+|.+|+..|++++|..+|++|-.- . +. ....|.....++...+
T Consensus 832 L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~ 911 (950)
T 4gq2_M 832 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 911 (950)
T ss_dssp HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcC
Confidence 33445778888899999999999999999999986421 0 01 1134566788888899
Q ss_pred CHHHHHHHHHHHHhhc
Q 004336 524 HCEEGLRKAEESIQMK 539 (760)
Q Consensus 524 ~~eeAl~~~~~al~l~ 539 (760)
-++-++...+.|++.-
T Consensus 912 a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 912 AYIDALEFSLLADASK 927 (950)
T ss_dssp CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999998753
No 324
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=27.31 E-value=26 Score=20.49 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=10.6
Q ss_pred cchhHHHHHHHHHh
Q 004336 97 LGEAKLMRRSLRKA 110 (760)
Q Consensus 97 ~~~~~~~~~~~~~~ 110 (760)
-.-|.|+||||...
T Consensus 11 hsspellrrcldnc 24 (26)
T 2plx_B 11 HSSPELLRRCLDNC 24 (26)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcc
Confidence 35688999999653
No 325
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.32 E-value=84 Score=25.77 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 681 PYRYRAAVLMDSHKENEAIAELSRAI 706 (760)
Q Consensus 681 ~~~~La~~~~~~g~~~eAi~~l~kal 706 (760)
.+..++..+...|+|++||+..+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34567889999999999998777766
No 326
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.18 E-value=2.7e+02 Score=28.46 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=19.3
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhhCC
Q 004336 390 GCVRLLRKEYDEAEHLFEAILTLSP 414 (760)
Q Consensus 390 G~~~l~~g~~~eA~~~~~~aL~l~P 414 (760)
|.-++..|++++|+..|+.+|..-|
T Consensus 121 gyk~~t~gKf~eAl~~Fr~iL~~i~ 145 (325)
T 3mv2_A 121 GYKNFKLNKPDIAIECFREAIYRIT 145 (325)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 4445555699999999999987654
No 327
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=25.82 E-value=2e+02 Score=27.30 Aligned_cols=69 Identities=7% Similarity=-0.143 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
|....+|...+..+ ..+...++...|.-+... ....+..|...|..+...|++.+|..+|+.+++....
T Consensus 77 ~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 77 PRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44455666666554 234467888888887765 4566777888889999999999999999999987543
No 328
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=24.96 E-value=19 Score=23.88 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=8.6
Q ss_pred hhhhhhhhhhhhhhhhh
Q 004336 120 KLVFGAWLKYEKQGEEL 136 (760)
Q Consensus 120 ~~~~~~~~~~~~~~~~~ 136 (760)
-+.++||+.| ||++++
T Consensus 20 GLfv~Ay~Qy-rRg~~l 35 (37)
T 1q90_G 20 GLFVTAYLQY-LRGDLA 35 (37)
T ss_dssp HHHHHHHHHH-C-----
T ss_pred HHHHHHHHHH-hhcccc
Confidence 3567899999 676654
No 329
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.73 E-value=2.5e+02 Score=25.57 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH---HH---HHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERL---VY---EGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~---~~---Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
-+..|..++..|+|=+|-+.++.+....+.. ...+ .. .|..+...|+..-|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567788888999999999999999876544 2222 22 334556789999999999999874
No 330
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=23.20 E-value=4e+02 Score=27.68 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--HHH
Q 004336 511 RLVYEGWILYDTSH---CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--GQA 585 (760)
Q Consensus 511 a~~~Lg~i~~~~g~---~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--~~a 585 (760)
....|-|++++.|+ |.-|+-.+-..-++.|.. .....+..+.+|+...+..... ..-
T Consensus 237 LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~------------------gr~~~l~L~~~AI~sa~~yY~n~HvYP 298 (472)
T 3re2_A 237 LQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTP------------------GRPPAEELFKEAITVAKREYSDHHIYP 298 (472)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCT------------------TSCCHHHHHHHHHHHHHHHSTTCCSHH
T ss_pred HHHHHHHHHHhccchhhCchhhcchhhHHhcCCCC------------------CCCCHHHHHHHHHHHHHHHhccCCccc
Confidence 34667788888775 556666666666666655 0111223344444443333222 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 586 LNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 586 ~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
|..+|..+++.+++.+|+..+-.|-.
T Consensus 299 YtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 299 YTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 55566677777777777777666543
No 331
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=22.74 E-value=1.4e+02 Score=23.75 Aligned_cols=20 Identities=5% Similarity=0.062 Sum_probs=12.5
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 004336 392 VRLLRKEYDEAEHLFEAILT 411 (760)
Q Consensus 392 ~~l~~g~~~eA~~~~~~aL~ 411 (760)
-.-..|+|++|+.+|.+++.
T Consensus 20 e~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 20 KADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 33344487777777776654
No 332
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.55 E-value=1.4e+02 Score=24.56 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=18.5
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAIL 410 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL 410 (760)
|-.+-..+..++..|+|++|+++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3334444445555559999999888765
No 333
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=21.97 E-value=3e+02 Score=28.57 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=28.8
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 675 DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 675 ~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
+....++|.++|..+++.+++.+|+..+..|-.
T Consensus 292 ~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 292 SDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 456788999999999999999999999987764
No 334
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.82 E-value=4.2e+02 Score=28.05 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=45.9
Q ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--HHHH
Q 004336 512 LVYEGWILYDTSH---CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--GQAL 586 (760)
Q Consensus 512 ~~~Lg~i~~~~g~---~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--~~a~ 586 (760)
...|-|++++.|+ |.-|+-.+-..-++.|.. .....+..+.+|+...+..... ..-|
T Consensus 260 Qq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~------------------gr~~~~~L~~~AI~sa~~~Y~n~HvYPY 321 (550)
T 3u84_A 260 QQKLLWLLYDLGHLERYPMALGNLADLEELEPTP------------------GRPDPLTLYHKGIASAKTYYRDEHIYPY 321 (550)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCT------------------TCCCHHHHHHHHHHHHHHHSTTCCSHHH
T ss_pred HHHHHHHHHhccchhhCchhhcchhhHhhcCCCC------------------CCCCHHHHHHHHHHHHHHHhccCCccce
Confidence 3556677777765 455666666555555554 0111223344444443333222 4455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 587 NNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 587 ~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..+|..+++.+++.+|+..+-.|-.
T Consensus 322 tYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 322 MYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred eecchhhhhcchHHHHHHHHHHHHH
Confidence 6677777777777777777766644
Done!