Query 004337
Match_columns 760
No_of_seqs 414 out of 1815
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 21:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 2.2E-90 4.8E-95 707.8 22.4 225 276-500 1-229 (229)
2 PF01852 START: START domain; 99.7 3.2E-17 7E-22 164.6 14.6 200 281-500 1-205 (206)
3 smart00234 START in StAR and p 99.7 5.8E-16 1.3E-20 155.9 18.4 197 282-501 2-206 (206)
4 KOG0483 Transcription factor H 99.7 2.6E-17 5.6E-22 166.3 7.6 82 92-173 52-133 (198)
5 KOG0842 Transcription factor t 99.6 3.3E-16 7E-21 166.8 10.0 68 86-153 149-216 (307)
6 KOG0488 Transcription factor B 99.6 4.2E-16 9E-21 168.0 5.1 65 87-151 169-233 (309)
7 KOG0485 Transcription factor N 99.6 2.5E-15 5.3E-20 150.8 6.9 63 88-150 102-164 (268)
8 KOG0494 Transcription factor C 99.6 2E-15 4.3E-20 154.6 6.1 76 87-162 138-213 (332)
9 KOG0484 Transcription factor P 99.6 9.4E-16 2E-20 138.0 2.9 64 86-149 13-76 (125)
10 KOG0843 Transcription factor E 99.6 1.7E-15 3.7E-20 148.5 4.9 63 90-152 102-164 (197)
11 KOG0487 Transcription factor A 99.6 4.9E-15 1.1E-19 158.0 8.5 66 88-153 233-298 (308)
12 KOG0489 Transcription factor z 99.6 1.3E-15 2.9E-20 160.9 3.3 63 89-151 158-220 (261)
13 KOG0850 Transcription factor D 99.5 5.2E-15 1.1E-19 150.1 6.5 65 86-150 118-182 (245)
14 KOG0848 Transcription factor C 99.5 3.3E-14 7.2E-19 146.5 8.9 67 87-153 196-262 (317)
15 KOG0492 Transcription factor M 99.5 3.1E-14 6.7E-19 142.3 5.7 65 86-150 140-204 (246)
16 PF00046 Homeobox: Homeobox do 99.5 4.4E-14 9.6E-19 115.2 4.7 57 91-147 1-57 (57)
17 KOG2251 Homeobox transcription 99.4 6.7E-14 1.5E-18 141.6 5.1 66 87-152 34-99 (228)
18 KOG0493 Transcription factor E 99.4 4.2E-13 9E-18 137.9 5.8 59 91-149 247-305 (342)
19 KOG0486 Transcription factor P 99.3 2E-12 4.4E-17 136.2 5.7 61 88-148 110-170 (351)
20 smart00389 HOX Homeodomain. DN 99.3 2.5E-12 5.4E-17 104.0 4.6 55 92-146 2-56 (56)
21 cd00086 homeodomain Homeodomai 99.3 3.6E-12 7.8E-17 103.7 5.0 57 92-148 2-58 (59)
22 cd00177 START Lipid-binding ST 99.3 8.7E-11 1.9E-15 115.5 15.7 183 285-497 2-190 (193)
23 TIGR01565 homeo_ZF_HD homeobox 99.3 5.4E-12 1.2E-16 104.3 5.2 53 90-142 1-57 (58)
24 KOG0491 Transcription factor B 99.3 9.1E-13 2E-17 127.7 0.7 65 89-153 99-163 (194)
25 COG5576 Homeodomain-containing 99.2 5.8E-12 1.3E-16 123.7 4.5 63 91-153 52-114 (156)
26 KOG0844 Transcription factor E 99.2 3.4E-12 7.3E-17 133.6 3.0 60 90-149 181-240 (408)
27 KOG0847 Transcription factor, 99.2 5.9E-12 1.3E-16 126.8 2.9 65 86-150 163-227 (288)
28 KOG3802 Transcription factor O 99.1 2.4E-11 5.2E-16 132.4 4.2 61 88-148 292-352 (398)
29 KOG4577 Transcription factor L 99.1 5.9E-11 1.3E-15 123.7 6.4 70 90-159 167-236 (383)
30 cd08871 START_STARD10-like Lip 99.1 5.3E-09 1.1E-13 107.8 18.8 198 283-511 8-212 (222)
31 cd08867 START_STARD4_5_6-like 99.0 1.3E-08 2.8E-13 103.8 17.3 191 280-499 4-205 (206)
32 cd08868 START_STARD1_3_like Ch 99.0 9E-09 2E-13 105.1 15.6 193 279-502 6-208 (208)
33 KOG0490 Transcription factor, 98.9 7.6E-10 1.6E-14 113.6 3.4 64 87-150 57-120 (235)
34 cd08903 START_STARD5-like Lipi 98.8 1.9E-07 4.1E-12 95.9 17.0 190 280-500 4-206 (208)
35 cd08904 START_STARD6-like Lipi 98.8 1.3E-07 2.9E-12 97.0 15.4 169 280-470 4-178 (204)
36 KOG0849 Transcription factor P 98.7 1.5E-08 3.3E-13 111.8 5.0 63 87-149 173-235 (354)
37 cd08909 START_STARD13-like C-t 98.6 4.9E-07 1.1E-11 92.9 14.4 125 333-470 50-178 (205)
38 cd08869 START_RhoGAP C-termina 98.6 1.4E-06 3.1E-11 88.7 15.1 161 284-468 4-168 (197)
39 cd08905 START_STARD1-like Chol 98.5 1.7E-06 3.8E-11 88.9 14.9 189 279-500 6-207 (209)
40 KOG1168 Transcription factor A 98.5 4.8E-08 1E-12 102.4 3.0 61 89-149 308-368 (385)
41 PLN00188 enhanced disease resi 98.4 2.8E-06 6.1E-11 99.7 13.8 126 335-472 227-365 (719)
42 cd08906 START_STARD3-like Chol 98.3 1.5E-05 3.3E-10 82.1 15.8 192 279-500 6-207 (209)
43 KOG0775 Transcription factor S 98.2 7.2E-07 1.6E-11 93.5 4.2 51 97-147 183-233 (304)
44 cd08902 START_STARD4-like Lipi 98.2 3.1E-05 6.7E-10 79.3 15.2 191 280-498 4-200 (202)
45 cd08874 START_STARD9-like C-te 98.1 2.5E-05 5.4E-10 80.5 11.7 128 328-473 43-181 (205)
46 cd08908 START_STARD12-like C-t 98.1 6.2E-05 1.3E-09 77.6 13.9 162 282-468 10-175 (204)
47 cd08876 START_1 Uncharacterize 98.0 0.00011 2.3E-09 73.9 14.9 150 336-499 42-194 (195)
48 cd08910 START_STARD2-like Lipi 98.0 0.00013 2.7E-09 75.2 13.9 147 336-501 50-206 (207)
49 cd08870 START_STARD2_7-like Li 98.0 0.00029 6.3E-09 72.3 16.6 191 287-501 8-208 (209)
50 KOG0774 Transcription factor P 97.9 7.9E-06 1.7E-10 85.1 3.5 58 91-148 189-249 (334)
51 cd08877 START_2 Uncharacterize 97.9 0.00033 7.2E-09 72.1 14.7 196 279-500 3-213 (215)
52 cd08907 START_STARD8-like C-te 97.8 0.00017 3.7E-09 74.0 11.0 163 283-470 11-178 (205)
53 PF05920 Homeobox_KN: Homeobox 97.8 1.1E-05 2.3E-10 62.3 1.7 34 111-144 7-40 (40)
54 KOG2252 CCAAT displacement pro 97.7 3.8E-05 8.2E-10 87.5 5.3 58 89-146 419-476 (558)
55 cd08911 START_STARD7-like Lipi 97.6 0.0015 3.2E-08 67.2 14.4 149 336-501 46-206 (207)
56 KOG0490 Transcription factor, 97.4 0.00016 3.5E-09 74.2 5.0 64 87-150 150-213 (235)
57 cd08872 START_STARD11-like Cer 97.3 0.0066 1.4E-07 64.0 16.1 191 282-499 7-224 (235)
58 cd08873 START_STARD14_15-like 97.2 0.0036 7.8E-08 66.0 12.2 118 331-466 78-203 (235)
59 cd08869 START_RhoGAP C-termina 96.8 0.036 7.9E-07 56.6 15.4 173 546-757 17-196 (197)
60 cd08914 START_STARD15-like Lip 96.6 0.016 3.4E-07 61.2 11.3 123 336-474 79-210 (236)
61 cd08871 START_STARD10-like Lip 96.6 0.054 1.2E-06 56.1 15.2 175 546-756 21-201 (222)
62 cd08913 START_STARD14-like Lip 96.6 0.026 5.6E-07 59.8 12.4 124 339-475 85-215 (240)
63 KOG1146 Homeobox protein [Gene 96.3 0.0023 5E-08 79.3 3.1 61 90-150 903-963 (1406)
64 cd08907 START_STARD8-like C-te 96.0 0.17 3.8E-06 52.3 14.5 174 545-756 24-203 (205)
65 cd08904 START_STARD6-like Lipi 95.4 0.18 3.9E-06 52.3 12.0 149 547-725 21-176 (204)
66 cd08874 START_STARD9-like C-te 95.3 0.17 3.7E-06 52.4 11.3 149 545-725 19-176 (205)
67 KOG0773 Transcription factor M 95.1 0.019 4E-07 63.4 3.9 62 90-151 239-303 (342)
68 cd08868 START_STARD1_3_like Ch 95.1 1.2 2.6E-05 45.7 16.7 176 547-756 23-206 (208)
69 PF11569 Homez: Homeodomain le 94.6 0.018 3.9E-07 47.7 1.7 42 101-142 9-50 (56)
70 cd08877 START_2 Uncharacterize 94.6 1.5 3.3E-05 45.1 16.3 117 534-666 10-129 (215)
71 cd00177 START Lipid-binding ST 94.5 1.3 2.7E-05 43.5 14.7 148 548-726 15-166 (193)
72 smart00234 START in StAR and p 94.2 1 2.2E-05 45.5 13.7 150 547-725 18-173 (206)
73 cd08903 START_STARD5-like Lipi 94.2 1.3 2.9E-05 45.7 14.6 177 546-756 20-206 (208)
74 KOG4005 Transcription factor X 93.8 0.53 1.2E-05 49.4 10.8 61 138-212 81-143 (292)
75 cd08876 START_1 Uncharacterize 93.3 2 4.3E-05 43.1 13.9 149 545-725 14-167 (195)
76 cd08909 START_STARD13-like C-t 93.2 2.8 6.1E-05 43.6 15.0 173 548-756 27-203 (205)
77 KOG4196 bZIP transcription fac 92.9 1.2 2.6E-05 42.9 10.6 85 95-213 22-107 (135)
78 cd08873 START_STARD14_15-like 92.5 1.2 2.5E-05 47.4 11.3 66 546-623 53-118 (235)
79 cd08908 START_STARD12-like C-t 92.5 3.2 6.9E-05 43.2 14.2 172 549-756 28-202 (204)
80 cd08867 START_STARD4_5_6-like 92.4 5.4 0.00012 40.8 15.8 163 528-725 8-178 (206)
81 PRK09413 IS2 repressor TnpA; R 92.0 0.95 2.1E-05 42.8 9.0 41 94-139 10-51 (121)
82 cd08914 START_STARD15-like Lip 91.4 2.1 4.5E-05 45.5 11.5 67 545-623 53-119 (236)
83 cd08906 START_STARD3-like Chol 90.3 13 0.00029 38.5 16.2 130 547-696 24-160 (209)
84 cd08902 START_STARD4-like Lipi 89.9 2.4 5.1E-05 44.1 10.1 58 546-611 21-78 (202)
85 cd08866 SRPBCC_11 Ligand-bindi 89.6 5.5 0.00012 37.4 11.9 133 338-500 2-143 (144)
86 cd08860 TcmN_ARO-CYC_like N-te 89.4 6.1 0.00013 38.5 12.2 141 338-501 4-144 (146)
87 cd08875 START_ArGLABRA2_like C 89.2 7 0.00015 41.4 13.2 186 526-732 3-204 (229)
88 cd08870 START_STARD2_7-like Li 89.1 4.8 0.0001 41.4 11.8 109 547-666 21-133 (209)
89 PF02183 HALZ: Homeobox associ 88.1 1.1 2.3E-05 35.8 4.8 23 149-171 2-24 (45)
90 cd05018 CoxG Carbon monoxide d 87.6 7.6 0.00016 36.0 11.2 120 340-481 6-125 (144)
91 KOG3623 Homeobox transcription 87.2 0.52 1.1E-05 56.2 3.6 51 97-148 564-614 (1007)
92 cd07821 PYR_PYL_RCAR_like Pyra 86.9 11 0.00024 34.4 11.9 134 340-499 6-139 (140)
93 PF04218 CENP-B_N: CENP-B N-te 86.9 0.88 1.9E-05 37.2 3.9 46 91-141 1-46 (53)
94 PF06005 DUF904: Protein of un 86.4 2.5 5.5E-05 36.9 6.6 50 149-219 15-68 (72)
95 cd07813 COQ10p_like Coenzyme Q 86.3 9.1 0.0002 35.9 11.0 135 339-501 3-137 (138)
96 PF01852 START: START domain; 86.0 11 0.00024 37.8 12.2 166 530-725 2-173 (206)
97 KOG2761 START domain-containin 85.1 6.1 0.00013 41.5 9.8 109 344-464 63-183 (219)
98 PRK15422 septal ring assembly 84.4 3.9 8.5E-05 36.3 6.8 60 146-219 12-75 (79)
99 cd07819 SRPBCC_2 Ligand-bindin 84.2 16 0.00035 33.6 11.5 132 339-498 6-139 (140)
100 cd08864 SRPBCC_DUF3074 DUF3074 83.7 5.6 0.00012 41.4 9.0 85 388-474 90-184 (208)
101 cd07817 SRPBCC_8 Ligand-bindin 83.4 31 0.00068 31.7 13.1 134 340-500 5-138 (139)
102 cd08861 OtcD1_ARO-CYC_like N-t 83.2 8.8 0.00019 35.9 9.4 137 340-500 4-141 (142)
103 cd08910 START_STARD2-like Lipi 82.3 1.9 4.2E-05 44.5 4.9 59 545-611 22-81 (207)
104 PF02183 HALZ: Homeobox associ 80.8 4.1 8.9E-05 32.5 5.1 40 156-216 2-41 (45)
105 cd07822 SRPBCC_4 Ligand-bindin 79.7 21 0.00046 32.6 10.5 51 447-500 91-141 (141)
106 PRK10724 hypothetical protein; 78.2 50 0.0011 32.8 13.1 137 338-502 18-154 (158)
107 cd08911 START_STARD7-like Lipi 77.8 19 0.00042 37.1 10.5 179 546-756 19-205 (207)
108 PF10604 Polyketide_cyc2: Poly 77.2 58 0.0013 29.7 15.5 35 340-378 7-41 (139)
109 cd08913 START_STARD14-like Lip 77.1 3.3 7.1E-05 44.1 4.7 67 545-623 56-122 (240)
110 PF01527 HTH_Tnp_1: Transposas 76.5 0.75 1.6E-05 39.2 -0.2 44 92-139 2-45 (76)
111 TIGR00219 mreC rod shape-deter 76.5 3.8 8.3E-05 44.6 5.1 42 153-211 67-108 (283)
112 COG3074 Uncharacterized protei 76.4 8.3 0.00018 33.6 6.0 59 148-220 14-76 (79)
113 smart00338 BRLZ basic region l 76.1 8.4 0.00018 32.4 6.0 39 151-210 25-63 (65)
114 PLN00188 enhanced disease resi 74.8 15 0.00032 44.7 9.7 120 587-726 234-362 (719)
115 PRK13922 rod shape-determining 73.3 5.2 0.00011 42.9 5.1 41 153-211 70-110 (276)
116 cd08865 SRPBCC_10 Ligand-bindi 73.1 73 0.0016 28.9 13.1 136 340-500 4-139 (140)
117 cd07818 SRPBCC_1 Ligand-bindin 72.9 41 0.0009 31.7 10.7 51 449-500 99-149 (150)
118 PF00170 bZIP_1: bZIP transcri 71.2 14 0.00031 30.9 6.3 23 151-173 25-47 (64)
119 cd08872 START_STARD11-like Cer 69.9 12 0.00026 39.6 6.8 62 543-611 21-84 (235)
120 PF06156 DUF972: Protein of un 69.4 8.7 0.00019 36.1 5.0 22 194-215 36-57 (107)
121 COG4026 Uncharacterized protei 69.3 16 0.00036 38.4 7.4 51 143-214 140-190 (290)
122 PF12711 Kinesin-relat_1: Kine 68.7 12 0.00027 33.9 5.6 45 157-216 22-66 (86)
123 TIGR03752 conj_TIGR03752 integ 66.3 9.5 0.00021 44.3 5.5 11 96-106 41-51 (472)
124 KOG4343 bZIP transcription fac 65.8 14 0.0003 43.3 6.6 22 194-215 316-337 (655)
125 cd07824 SRPBCC_6 Ligand-bindin 63.2 1.3E+02 0.0029 28.5 12.1 132 342-495 8-142 (146)
126 KOG0288 WD40 repeat protein Ti 63.1 17 0.00036 41.5 6.4 56 146-215 21-76 (459)
127 cd08905 START_STARD1-like Chol 62.3 2E+02 0.0042 29.8 15.9 195 526-756 5-207 (209)
128 PRK00888 ftsB cell division pr 61.8 23 0.0005 33.1 6.3 41 132-173 15-55 (105)
129 PRK13169 DNA replication intia 61.7 14 0.00031 34.9 4.9 20 195-214 37-56 (110)
130 cd07823 SRPBCC_5 Ligand-bindin 58.9 1.7E+02 0.0036 27.8 12.4 29 339-367 3-31 (146)
131 KOG1146 Homeobox protein [Gene 57.9 8.4 0.00018 49.3 3.4 95 91-198 445-540 (1406)
132 KOG0709 CREB/ATF family transc 57.8 32 0.00069 39.9 7.6 88 94-216 218-315 (472)
133 smart00340 HALZ homeobox assoc 57.6 10 0.00023 29.9 2.6 20 197-216 15-34 (44)
134 PF14197 Cep57_CLD_2: Centroso 57.3 26 0.00057 30.4 5.4 46 154-213 21-66 (69)
135 PF14389 Lzipper-MIP1: Leucine 57.1 76 0.0016 28.8 8.5 70 143-215 6-75 (88)
136 KOG3119 Basic region leucine z 56.7 19 0.00041 39.0 5.5 29 192-220 227-255 (269)
137 KOG4571 Activating transcripti 55.1 34 0.00074 37.5 6.9 44 147-211 243-286 (294)
138 PF07407 Seadorna_VP6: Seadorn 54.1 15 0.00033 40.6 4.2 24 152-175 32-55 (420)
139 KOG0971 Microtubule-associated 49.8 48 0.001 41.4 7.6 55 156-216 336-390 (1243)
140 COG1792 MreC Cell shape-determ 48.9 30 0.00065 37.8 5.5 43 151-211 65-107 (284)
141 PF15058 Speriolin_N: Sperioli 48.7 33 0.00072 35.5 5.3 40 154-215 7-46 (200)
142 KOG3119 Basic region leucine z 48.2 35 0.00075 37.0 5.8 19 197-215 225-243 (269)
143 PRK13729 conjugal transfer pil 47.7 33 0.00072 40.0 5.8 56 142-211 66-121 (475)
144 cd06171 Sigma70_r4 Sigma70, re 44.1 17 0.00036 27.5 2.0 43 96-143 10-52 (55)
145 TIGR02449 conserved hypothetic 44.0 96 0.0021 26.8 6.6 44 154-218 9-52 (65)
146 cd07812 SRPBCC START/RHO_alpha 43.8 2.2E+02 0.0047 24.7 11.1 49 447-496 90-138 (141)
147 KOG4403 Cell surface glycoprot 42.5 79 0.0017 36.5 7.5 23 282-304 401-423 (575)
148 PF04545 Sigma70_r4: Sigma-70, 42.4 30 0.00066 27.2 3.2 39 96-139 4-42 (50)
149 PRK14872 rod shape-determining 40.9 41 0.00089 37.8 5.0 42 152-211 57-98 (337)
150 PF07716 bZIP_2: Basic region 40.5 81 0.0017 25.7 5.5 14 198-211 36-49 (54)
151 PF07106 TBPIP: Tat binding pr 40.4 36 0.00079 33.9 4.2 72 134-217 56-132 (169)
152 cd04765 HTH_MlrA-like_sg2 Heli 38.8 81 0.0018 28.9 5.9 63 92-173 34-97 (99)
153 cd07823 SRPBCC_5 Ligand-bindin 38.6 14 0.00029 35.3 0.8 26 584-609 3-28 (146)
154 PRK10884 SH3 domain-containing 38.0 1.1E+02 0.0024 32.0 7.4 19 157-175 130-148 (206)
155 KOG4571 Activating transcripti 37.9 83 0.0018 34.6 6.6 27 190-216 258-284 (294)
156 cd07819 SRPBCC_2 Ligand-bindin 37.5 23 0.0005 32.6 2.2 30 581-610 3-32 (140)
157 KOG1962 B-cell receptor-associ 37.5 76 0.0016 33.5 6.1 18 197-214 182-199 (216)
158 PF10604 Polyketide_cyc2: Poly 37.4 30 0.00065 31.6 2.9 133 583-755 5-138 (139)
159 TIGR03752 conj_TIGR03752 integ 37.3 72 0.0016 37.3 6.4 22 152-173 73-94 (472)
160 cd08865 SRPBCC_10 Ligand-bindi 37.3 20 0.00043 32.7 1.7 27 583-609 2-28 (140)
161 cd01106 HTH_TipAL-Mta Helix-Tu 37.1 1.7E+02 0.0036 26.7 7.7 37 93-142 35-71 (103)
162 PRK10884 SH3 domain-containing 36.7 62 0.0013 33.9 5.3 40 151-211 131-170 (206)
163 PRK00118 putative DNA-binding 36.2 1.3E+02 0.0027 28.3 6.7 51 96-151 17-67 (104)
164 PF15392 Joubert: Joubert synd 36.1 2.7E+02 0.0059 31.1 10.1 34 331-364 240-276 (329)
165 PF04880 NUDE_C: NUDE protein, 36.0 34 0.00075 34.7 3.2 16 195-210 32-47 (166)
166 PRK03975 tfx putative transcri 35.9 59 0.0013 32.1 4.7 47 95-147 5-51 (141)
167 cd04783 HTH_MerR1 Helix-Turn-H 35.7 1.5E+02 0.0032 28.2 7.3 70 92-174 34-106 (126)
168 cd00569 HTH_Hin_like Helix-tur 35.6 69 0.0015 21.4 4.0 38 96-138 5-42 (42)
169 TIGR02051 MerR Hg(II)-responsi 35.6 2.7E+02 0.0059 26.4 9.1 69 92-173 33-104 (124)
170 TIGR02209 ftsL_broad cell divi 35.6 1.2E+02 0.0027 26.4 6.4 22 199-221 50-71 (85)
171 cd04765 HTH_MlrA-like_sg2 Heli 35.3 16 0.00035 33.5 0.7 20 121-140 4-23 (99)
172 cd04781 HTH_MerR-like_sg6 Heli 35.1 2.9E+02 0.0064 25.9 9.2 69 92-173 33-102 (120)
173 PRK00888 ftsB cell division pr 34.3 51 0.0011 30.8 3.9 37 137-173 26-62 (105)
174 KOG4196 bZIP transcription fac 34.2 1.9E+02 0.0041 28.4 7.6 21 197-217 98-118 (135)
175 cd07821 PYR_PYL_RCAR_like Pyra 33.9 30 0.00064 31.6 2.3 27 583-609 4-30 (140)
176 PF10224 DUF2205: Predicted co 33.5 1.8E+02 0.0039 26.2 6.9 21 195-215 45-65 (80)
177 PF07989 Microtub_assoc: Micro 33.4 1E+02 0.0023 27.2 5.4 60 151-216 6-65 (75)
178 PF06785 UPF0242: Uncharacteri 32.8 57 0.0012 36.5 4.4 73 137-221 54-126 (401)
179 cd08901 SRPBCC_CalC_Aha1-like_ 32.8 26 0.00057 33.1 1.7 27 582-608 2-28 (136)
180 PF10482 CtIP_N: Tumour-suppre 32.6 19 0.0004 34.3 0.7 32 154-185 44-75 (120)
181 KOG4005 Transcription factor X 32.6 81 0.0018 33.7 5.3 48 151-212 103-150 (292)
182 cd07825 SRPBCC_7 Ligand-bindin 32.3 33 0.00072 32.0 2.3 27 583-609 3-29 (144)
183 cd08862 SRPBCC_Smu440-like Lig 32.2 32 0.00068 31.6 2.2 30 581-610 2-31 (138)
184 cd07817 SRPBCC_8 Ligand-bindin 32.1 30 0.00065 31.9 2.0 28 583-610 3-30 (139)
185 cd05018 CoxG Carbon monoxide d 31.7 22 0.00048 32.9 1.0 27 584-610 5-31 (144)
186 cd08866 SRPBCC_11 Ligand-bindi 31.6 28 0.00061 32.6 1.7 28 583-610 2-29 (144)
187 PF04967 HTH_10: HTH DNA bindi 31.0 61 0.0013 26.8 3.3 38 97-134 1-40 (53)
188 PF13443 HTH_26: Cro/C1-type H 30.4 44 0.00096 27.2 2.5 33 119-151 12-44 (63)
189 PHA03162 hypothetical protein; 30.1 21 0.00045 34.7 0.6 26 187-212 13-38 (135)
190 PF14662 CCDC155: Coiled-coil 29.5 97 0.0021 32.2 5.2 58 139-210 82-139 (193)
191 TIGR02894 DNA_bind_RsfA transc 29.3 1.9E+02 0.0041 29.4 7.0 20 196-215 127-146 (161)
192 PF07334 IFP_35_N: Interferon- 29.2 63 0.0014 28.8 3.3 15 199-213 5-19 (76)
193 cd07812 SRPBCC START/RHO_alpha 28.8 35 0.00075 29.9 1.8 26 584-609 3-28 (141)
194 PHA03155 hypothetical protein; 28.8 21 0.00045 34.0 0.3 25 188-212 9-33 (115)
195 cd07814 SRPBCC_CalC_Aha1-like 28.7 30 0.00066 31.7 1.4 27 583-609 3-29 (139)
196 cd07814 SRPBCC_CalC_Aha1-like 28.6 4.5E+02 0.0097 23.8 11.1 47 448-500 92-138 (139)
197 KOG1029 Endocytic adaptor prot 28.4 1.3E+02 0.0027 37.4 6.5 89 129-217 405-502 (1118)
198 PRK06266 transcription initiat 28.2 46 0.00099 34.0 2.7 34 178-211 137-170 (178)
199 TIGR00219 mreC rod shape-deter 28.1 98 0.0021 33.8 5.4 44 157-217 64-107 (283)
200 PHA00728 hypothetical protein 28.1 54 0.0012 31.6 2.9 25 195-219 6-30 (151)
201 KOG4343 bZIP transcription fac 28.1 64 0.0014 38.1 4.0 23 153-175 310-332 (655)
202 cd07818 SRPBCC_1 Ligand-bindin 27.5 1.1E+02 0.0024 28.7 5.1 31 582-612 4-34 (150)
203 PTZ00454 26S protease regulato 27.4 1.4E+02 0.0031 34.1 6.8 45 150-215 20-64 (398)
204 PRK13922 rod shape-determining 27.1 1E+02 0.0022 33.0 5.3 43 154-217 64-109 (276)
205 cd01107 HTH_BmrR Helix-Turn-He 26.9 4E+02 0.0087 24.5 8.5 67 93-172 36-102 (108)
206 PF15290 Syntaphilin: Golgi-lo 26.6 8.7E+02 0.019 26.9 11.8 32 142-175 74-105 (305)
207 cd04770 HTH_HMRTR Helix-Turn-H 26.5 5.1E+02 0.011 24.2 9.3 68 92-172 34-106 (123)
208 PF00170 bZIP_1: bZIP transcri 26.0 2E+02 0.0043 24.1 5.7 20 195-214 41-60 (64)
209 cd04787 HTH_HMRTR_unk Helix-Tu 25.9 3.6E+02 0.0079 25.8 8.3 37 92-141 34-70 (133)
210 cd04775 HTH_Cfa-like Helix-Tur 25.7 4E+02 0.0086 24.3 8.2 66 92-173 34-99 (102)
211 PF13936 HTH_38: Helix-turn-he 25.5 49 0.0011 25.8 1.8 40 94-138 2-41 (44)
212 PF05812 Herpes_BLRF2: Herpesv 25.4 25 0.00055 33.7 0.2 23 190-212 6-28 (118)
213 PF08961 DUF1875: Domain of un 24.8 24 0.00053 37.1 0.0 32 154-206 131-162 (243)
214 PRK03918 chromosome segregatio 24.7 2.2E+02 0.0047 35.5 8.2 13 177-189 435-447 (880)
215 cd07822 SRPBCC_4 Ligand-bindin 24.5 57 0.0012 29.7 2.4 26 584-609 4-29 (141)
216 PF08281 Sigma70_r4_2: Sigma-7 24.3 88 0.0019 24.8 3.1 39 97-140 11-49 (54)
217 PF01166 TSC22: TSC-22/dip/bun 24.1 1E+02 0.0022 26.2 3.4 13 197-209 31-43 (59)
218 cd04785 HTH_CadR-PbrR-like Hel 24.0 5.9E+02 0.013 24.1 9.2 71 92-175 34-109 (126)
219 KOG3755 SATB1 matrix attachmen 23.9 21 0.00047 42.4 -0.7 44 106-149 708-758 (769)
220 PF09726 Macoilin: Transmembra 23.8 6.9E+02 0.015 31.0 11.9 7 399-405 668-674 (697)
221 PF09607 BrkDBD: Brinker DNA-b 23.8 94 0.002 26.4 3.2 43 94-138 3-46 (58)
222 PRK09413 IS2 repressor TnpA; R 23.8 1.4E+02 0.0031 28.1 5.0 13 197-209 88-100 (121)
223 KOG3156 Uncharacterized membra 23.5 2.3E+02 0.005 30.0 6.7 47 151-217 93-139 (220)
224 PF04423 Rad50_zn_hook: Rad50 23.2 31 0.00068 28.0 0.4 9 179-187 22-30 (54)
225 TIGR02044 CueR Cu(I)-responsiv 23.2 6.4E+02 0.014 23.8 9.4 71 91-174 33-108 (127)
226 PF14645 Chibby: Chibby family 22.6 2.2E+02 0.0047 27.2 5.9 24 150-173 76-99 (116)
227 cd07820 SRPBCC_3 Ligand-bindin 22.6 52 0.0011 30.9 1.8 26 584-609 3-28 (137)
228 cd01109 HTH_YyaN Helix-Turn-He 22.6 5.1E+02 0.011 23.9 8.4 37 93-142 35-71 (113)
229 TIGR02047 CadR-PbrR Cd(II)/Pb( 22.5 6.8E+02 0.015 23.8 9.6 69 92-173 34-107 (127)
230 PF03962 Mnd1: Mnd1 family; I 22.4 6.7E+02 0.015 25.8 9.9 61 152-220 69-129 (188)
231 cd01110 HTH_SoxR Helix-Turn-He 22.3 5.6E+02 0.012 24.9 8.9 36 92-140 34-69 (139)
232 PF10668 Phage_terminase: Phag 22.2 49 0.0011 28.1 1.3 20 118-137 23-42 (60)
233 PF04999 FtsL: Cell division p 22.0 2.4E+02 0.0053 25.3 5.9 50 151-222 34-83 (97)
234 COG1675 TFA1 Transcription ini 21.9 71 0.0015 32.7 2.7 38 178-215 133-170 (176)
235 PRK01156 chromosome segregatio 21.9 2.2E+02 0.0048 35.7 7.6 35 154-188 425-463 (895)
236 PF12824 MRP-L20: Mitochondria 21.9 4.5E+02 0.0098 26.6 8.3 48 93-142 82-129 (164)
237 cd04777 HTH_MerR-like_sg1 Heli 21.9 3.4E+02 0.0073 24.9 6.9 35 94-141 34-68 (107)
238 KOG2761 START domain-containin 21.6 37 0.0008 35.9 0.6 58 544-610 25-84 (219)
239 PRK02224 chromosome segregatio 21.4 4E+02 0.0087 33.3 9.6 14 176-189 450-463 (880)
240 PF11932 DUF3450: Protein of u 21.4 2E+02 0.0044 30.5 6.1 21 195-215 78-98 (251)
241 cd04784 HTH_CadR-PbrR Helix-Tu 21.2 4E+02 0.0086 25.2 7.5 37 92-141 34-70 (127)
242 PF06156 DUF972: Protein of un 21.1 1.6E+02 0.0035 27.7 4.6 48 153-221 9-56 (107)
243 PF10845 DUF2576: Protein of u 21.0 1.3E+02 0.0027 24.3 3.2 30 187-216 4-33 (48)
244 PRK09642 RNA polymerase sigma 20.9 1E+02 0.0022 29.6 3.4 48 97-149 107-154 (160)
245 COG2262 HflX GTPases [General 20.8 2.5E+02 0.0054 32.5 6.9 60 156-216 116-179 (411)
246 PF04880 NUDE_C: NUDE protein, 20.6 1.1E+02 0.0024 31.0 3.7 21 195-215 25-45 (166)
247 PRK09644 RNA polymerase sigma 20.5 1E+02 0.0022 29.9 3.4 49 96-149 108-156 (165)
248 cd08898 SRPBCC_CalC_Aha1-like_ 20.4 70 0.0015 29.7 2.2 28 583-610 4-31 (145)
249 KOG0977 Nuclear envelope prote 20.4 2.4E+02 0.0053 33.8 6.9 26 194-219 169-194 (546)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=2.2e-90 Score=707.79 Aligned_cols=225 Identities=66% Similarity=1.088 Sum_probs=219.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhc
Q 004337 276 KPMIIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILM 355 (760)
Q Consensus 276 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lm 355 (760)
|++|++||++||+||++||++++|||++++++++|+||+|||.++||+..|+++.||++|||||||+|+||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCCCC--
Q 004337 356 DVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNLR-- 433 (760)
Q Consensus 356 D~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~-- 433 (760)
|+++|.++||+||++|+|++||++|.+|++||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~~ 160 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTA 160 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred --CCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004337 434 --PSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (760)
Q Consensus 434 --~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ce 500 (760)
..+++||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++||||||
T Consensus 161 p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 161 PPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 3368999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.73 E-value=3.2e-17 Score=164.64 Aligned_cols=200 Identities=25% Similarity=0.317 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcChh-h
Q 004337 281 ELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMDVN-Q 359 (760)
Q Consensus 281 ~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~-~ 359 (760)
|+|.++|.+++++++.++.-|....+ .-+.+.|.+..+. ..+..+..-|..++|...+.++++.|+|.. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~ 71 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKD----KKNGDVYYKKVSP-----SDSCPIKMFKAEGVVPASPEQVVEDLLDDREQ 71 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEE----ETTTCEEEEEEEC-----SSSTSCEEEEEEEEESSCHHHHHHHHHCGGGH
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEc----cCCCeEEEEEeCc-----cccccceEEEEEEEEcCChHHHHHHHHhhHhh
Confidence 58999999999999999999988652 1122233222221 111356788999999999999999999988 9
Q ss_pred HhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCCCCC----C
Q 004337 360 WSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNLRP----S 435 (760)
Q Consensus 360 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~----~ 435 (760)
|-.+|- .+..++.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+..|++.-.. .
T Consensus 72 Wd~~~~----~~~~le~~~~~------~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~ 140 (206)
T PF01852_consen 72 WDKMCV----EAEVLEQIDED------TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSK 140 (206)
T ss_dssp HSTTEE----EEEEEEEEETT------EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-T
T ss_pred cccchh----hheeeeecCCC------CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeecccccccccc
Confidence 999885 45666666633 678888899999999999 99999999999999999999999975432 2
Q ss_pred CCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004337 436 PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (760)
Q Consensus 436 ~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ce 500 (760)
.++|+..++||++|++.++|.|+||+|-|++..-+...-+++.++.+...--.+.+.+.|++|++
T Consensus 141 ~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 141 GYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp TSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred CcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 67999999999999999999999999999999999999999999999999999999999988765
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.70 E-value=5.8e-16 Score=155.95 Aligned_cols=197 Identities=38% Similarity=0.573 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHhhcCCCCceeecCCCCccccChHH-HhhcCCCCCCCCCCCCcceeeecceEEEechhh-HHHHhcCh--
Q 004337 282 LAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDE-YVRTFPRGIGPKPTGFKCEASRETAVVIMNHIS-LVEILMDV-- 357 (760)
Q Consensus 282 lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~e-Y~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~-LVe~lmD~-- 357 (760)
-|+.++.|+++++...+..|....++ -|... |.+..+ + +..+.+-|..++|...+.+ +.++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~~~~---~----~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~ 70 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSEN----ENGDEVRSILSP---G----RSPGEASRAVGVVPMVCADLVEELMDDLRY 70 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEcccc----CCcceEEEEccC---C----CCceEEEEEEEEEecChHHHHHHHHhcccc
Confidence 47889999999999999999987641 11112 222211 1 3457899999999999997 55677675
Q ss_pred -hhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCCCCC--
Q 004337 358 -NQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNLRP-- 434 (760)
Q Consensus 358 -~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~-- 434 (760)
.+|-..| ..++.++.++.+ ..+......+.. +| +..|||.++|++++.++|.|+|+..|++.-..
T Consensus 71 r~~Wd~~~----~~~~~ie~~~~~------~~i~~~~~~~~~-~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~ 138 (206)
T smart00234 71 RPEWDKNV----AKAETLEVIDNG------TVIYHYVSKFVA-GP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPP 138 (206)
T ss_pred hhhCchhc----ccEEEEEEECCC------CeEEEEEEeccc-Cc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCC
Confidence 4555554 456677766632 233333333333 35 55599999999999999999999999975431
Q ss_pred -CCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHHH
Q 004337 435 -SPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCER 501 (760)
Q Consensus 435 -~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~cer 501 (760)
..++|+..++||++|+++++|.|+|||+.|++..-+..+-+.+.++.++....+++|.+.|+++|++
T Consensus 139 ~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 139 TSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 2679999999999999999999999999999999998789999999999999999999999999963
No 4
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.69 E-value=2.6e-17 Score=166.34 Aligned_cols=82 Identities=33% Similarity=0.566 Sum_probs=75.7
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRY 171 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l 171 (760)
+++.|||.+|+..||+.|+...++.+.+|..||++|||.+|||++||||||||||.++.+.++..|+.+++.|+.++.+|
T Consensus 52 ~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~L 131 (198)
T KOG0483|consen 52 GKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRL 131 (198)
T ss_pred cccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHH
Confidence 34456999999999999999999999999999999999999999999999999999999999999999999998887774
Q ss_pred HH
Q 004337 172 RE 173 (760)
Q Consensus 172 ~e 173 (760)
..
T Consensus 132 q~ 133 (198)
T KOG0483|consen 132 QS 133 (198)
T ss_pred HH
Confidence 44
No 5
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.65 E-value=3.3e-16 Score=166.84 Aligned_cols=68 Identities=34% Similarity=0.517 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHH
Q 004337 86 QRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHE 153 (760)
Q Consensus 86 ~~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e 153 (760)
.+++|||+|..||..|+.+||+.|+.++|++..+|++||+.|+|++.||||||||||-|.||+++.+.
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 35667888999999999999999999999999999999999999999999999999999999876654
No 6
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.60 E-value=4.2e-16 Score=167.96 Aligned_cols=65 Identities=35% Similarity=0.499 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
.+|+||.|+.||..|+..||+.|++.+|++..+|.+||++|||+..|||+||||||+||||+.++
T Consensus 169 pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 169 PKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 35668889999999999999999999999999999999999999999999999999999997655
No 7
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.57 E-value=2.5e-15 Score=150.80 Aligned_cols=63 Identities=32% Similarity=0.424 Sum_probs=59.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
.+|||.|+.|+..|+..||..|+..+|++..+|..||++|.|++.||||||||||.||||+-.
T Consensus 102 ~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~a 164 (268)
T KOG0485|consen 102 DRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYA 164 (268)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHh
Confidence 367889999999999999999999999999999999999999999999999999999999643
No 8
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.57 E-value=2e-15 Score=154.64 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=68.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHHhHHHHHHHH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENE 162 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene 162 (760)
++|||+-||.||..|+++||+.|++.+||+...|+.||-++.|.+.+|+|||||||+||||..++.......+|+-
T Consensus 138 k~kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeyg 213 (332)
T KOG0494|consen 138 KKKRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYG 213 (332)
T ss_pred ccccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhc
Confidence 3344444899999999999999999999999999999999999999999999999999999998888777777654
No 9
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.57 E-value=9.4e-16 Score=138.04 Aligned_cols=64 Identities=28% Similarity=0.554 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 86 QRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 86 ~~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
.++|+||-|+.||..|+.+||+.|.+.+||+...|++||.++.|++.+|+|||||||+|.|||.
T Consensus 13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQE 76 (125)
T KOG0484|consen 13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQE 76 (125)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHH
Confidence 3556788999999999999999999999999999999999999999999999999999999864
No 10
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.56 E-value=1.7e-15 Score=148.52 Aligned_cols=63 Identities=32% Similarity=0.462 Sum_probs=60.4
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (760)
-||.||.||.+|+..||..|+.++|....+|++||+.|+|++.||||||||||+|.||++.+.
T Consensus 102 ~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 102 PKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 478899999999999999999999999999999999999999999999999999999988775
No 11
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.56 E-value=4.9e-15 Score=157.98 Aligned_cols=66 Identities=35% Similarity=0.427 Sum_probs=60.5
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHE 153 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e 153 (760)
++.||||..+|..|+.+||+.|..|.|.+.+.|.+|++.|+|++|||||||||||.|+||..++..
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~r 298 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRENR 298 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhhh
Confidence 345778889999999999999999999999999999999999999999999999999999875443
No 12
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.55 E-value=1.3e-15 Score=160.94 Aligned_cols=63 Identities=30% Similarity=0.458 Sum_probs=59.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
+.||.|+.||..|+.+||+.|..++|++..+|.+||..|.|+++||||||||||+||||..+.
T Consensus 158 ~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~ 220 (261)
T KOG0489|consen 158 KSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKA 220 (261)
T ss_pred CCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Confidence 458899999999999999999999999999999999999999999999999999999996543
No 13
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.54 E-value=5.2e-15 Score=150.09 Aligned_cols=65 Identities=29% Similarity=0.443 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 86 QRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 86 ~~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
+.+|.||.||.|+.-|+..|.+.|+++.|+...+|.+||.+|||+..||||||||||.|.||..+
T Consensus 118 k~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 118 KGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred CcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHh
Confidence 44556889999999999999999999999999999999999999999999999999999999665
No 14
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.51 E-value=3.3e-14 Score=146.54 Aligned_cols=67 Identities=31% Similarity=0.453 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHE 153 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e 153 (760)
-+.|-|-|..||..|..+||+.|...+|.++.++.+||.-|||++|||||||||||+|+||..+++.
T Consensus 196 tRTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 196 TRTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred eecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 3445577889999999999999999999999999999999999999999999999999999776654
No 15
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.48 E-value=3.1e-14 Score=142.26 Aligned_cols=65 Identities=32% Similarity=0.450 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 86 QRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 86 ~~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
+.+..||.|+.||.+|+..||+.|++.+|++..+|.+++..|.|++.||||||||||+|.||.|+
T Consensus 140 Khk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 140 KHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999654
No 16
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.46 E-value=4.4e-14 Score=115.17 Aligned_cols=57 Identities=44% Similarity=0.795 Sum_probs=54.9
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
||+|+.||.+|+..||..|..++||+..+++.||.++||++.||++||||||+++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567889999999999999999999999999999999999999999999999999986
No 17
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.44 E-value=6.7e-14 Score=141.58 Aligned_cols=66 Identities=27% Similarity=0.536 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (760)
.+|.||.||+||..|+++||..|.+..|||...|++||.+|+|.+.+|||||+|||+|+|++++.+
T Consensus 34 pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 34 PRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred chhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 345689999999999999999999999999999999999999999999999999999999977654
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.37 E-value=4.2e-13 Score=137.87 Aligned_cols=59 Identities=39% Similarity=0.638 Sum_probs=56.6
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
||.|+.||.+|++.|...|++++|+.+..|++||.+|+|.+.||||||||+|+|.||-.
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 67899999999999999999999999999999999999999999999999999999854
No 19
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.30 E-value=2e-12 Score=136.21 Aligned_cols=61 Identities=28% Similarity=0.542 Sum_probs=58.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
.|+||.|+.||.+|+++||..|+++.||+...|++||...+|++.+|++||.|||+||||.
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkr 170 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 170 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhh
Confidence 3678899999999999999999999999999999999999999999999999999999984
No 20
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.29 E-value=2.5e-12 Score=104.00 Aligned_cols=55 Identities=40% Similarity=0.719 Sum_probs=51.9
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHH
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (760)
+.|++|+.+|+..||..|..++||+..++.+||.++||+..||+.||+|||++.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 4567799999999999999999999999999999999999999999999999864
No 21
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.28 E-value=3.6e-12 Score=103.71 Aligned_cols=57 Identities=42% Similarity=0.780 Sum_probs=53.9
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
+.+..++.+|+..||..|..++||+..++..||.++||+++||+.||+|||.+.|+.
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 456789999999999999999999999999999999999999999999999998863
No 22
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.28 E-value=8.7e-11 Score=115.48 Aligned_cols=183 Identities=22% Similarity=0.351 Sum_probs=138.2
Q ss_pred HHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcC---hhhHh
Q 004337 285 AAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMD---VNQWS 361 (760)
Q Consensus 285 ~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD---~~~W~ 361 (760)
+|..+++.+.+.+ ..|-...+.+ +..-|.+..+. -...+-|..+.|..++.++.++|+| ..+|-
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~----~v~vy~~~~~~--------~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~ 68 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD----GVKIYTKPYED--------SGLKLLKAEGVIPASPEQVFELLMDIDLRKKWD 68 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC----cEEEEEecCCC--------CCceeEEEEEEECCCHHHHHHHHhCCchhhchh
Confidence 4667888887766 6798765431 23334444331 1346789999999999999999999 55565
Q ss_pred hhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCCC--CCC-CCc
Q 004337 362 TVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNL--RPS-PAV 438 (760)
Q Consensus 362 ~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~--~~~-~~~ 438 (760)
..| . ..+||..-.. ...++|..+..|.| +..|||.++|++.+.++|.++++..|+|.- ... .++
T Consensus 69 ~~~----~---~~~vl~~~~~-----~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~v 135 (193)
T cd00177 69 KNF----E---EFEVIEEIDE-----HTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYV 135 (193)
T ss_pred hcc----e---EEEEEEEeCC-----CeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcE
Confidence 544 3 3344443322 26889999999999 999999999999999999999999999873 222 679
Q ss_pred ceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHH
Q 004337 439 RCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDR 497 (760)
Q Consensus 439 ~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR 497 (760)
|++.+++|++|+++++|.|+||++-|++..-+.. ..++++.+.-.+..++..++.
T Consensus 136 R~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP----~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 136 RAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP----KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred EEEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc----HHHHHhhhhhccHHHHHHHHH
Confidence 9999999999999999999999999999886543 455666666777777777644
No 23
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.26 E-value=5.4e-12 Score=104.28 Aligned_cols=53 Identities=25% Similarity=0.470 Sum_probs=50.7
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCC----CCHHHHHHHHHHhCCCchhhhcccccch
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPH----PDDKQRKELSRELGLEPLQVKFWFQNKR 142 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~----Ps~~~R~~LA~~LgL~~rQVkvWFQNRR 142 (760)
+||.||.||++|+..||..|+..+| |+...|.+||.++||++++||+||||-+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 3788999999999999999999999 9999999999999999999999999964
No 24
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.26 E-value=9.1e-13 Score=127.69 Aligned_cols=65 Identities=29% Similarity=0.463 Sum_probs=60.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHE 153 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e 153 (760)
+++|.|+.|+..|+..||+.|+..+|++..+|.+||..|+|+++|||.||||||.|.||++++.+
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 35788999999999999999999999999999999999999999999999999999999776543
No 25
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.23 E-value=5.8e-12 Score=123.66 Aligned_cols=63 Identities=33% Similarity=0.506 Sum_probs=58.3
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHE 153 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e 153 (760)
+++|++.|.+|+.+|++.|+.++||+...|..|+..|+|+++-||+||||||++.|++...+.
T Consensus 52 ~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 52 KSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred cccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 667788999999999999999999999999999999999999999999999999999765543
No 26
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.23 E-value=3.4e-12 Score=133.61 Aligned_cols=60 Identities=30% Similarity=0.407 Sum_probs=57.1
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
-||-||.||.+||..||+.|-+..|-+...|.+||..|+|.+..|||||||||.|+|||.
T Consensus 181 mRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQR 240 (408)
T KOG0844|consen 181 MRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 240 (408)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhh
Confidence 378899999999999999999999999999999999999999999999999999999953
No 27
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.20 E-value=5.9e-12 Score=126.76 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 86 QRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 86 ~~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
+..+||..|..|+..||..||+.|+..+|+-..+|.+||..+|+++.||+|||||||+||||+..
T Consensus 163 kdG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 163 LNGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHA 227 (288)
T ss_pred cCccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhc
Confidence 34556778889999999999999999999999999999999999999999999999999999653
No 28
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.14 E-value=2.4e-11 Score=132.42 Aligned_cols=61 Identities=25% Similarity=0.425 Sum_probs=58.5
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
.|||||||.|+......||+.|.+|++|+..++..||.+|+|+...|+|||+|||.|+||.
T Consensus 292 ~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~ 352 (398)
T KOG3802|consen 292 SRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRI 352 (398)
T ss_pred ccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccC
Confidence 3678899999999999999999999999999999999999999999999999999999984
No 29
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.13 E-value=5.9e-11 Score=123.67 Aligned_cols=70 Identities=27% Similarity=0.478 Sum_probs=63.6
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHHhHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRT 159 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ 159 (760)
.||.|+.+|..|++.|...|+..++|....|++|+.++||.-|.|||||||||+|+||.++..-...+-+
T Consensus 167 nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgq 236 (383)
T KOG4577|consen 167 NKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQ 236 (383)
T ss_pred cCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHH
Confidence 4889999999999999999999999999999999999999999999999999999999776655545544
No 30
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.09 E-value=5.3e-09 Score=107.84 Aligned_cols=198 Identities=16% Similarity=0.237 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEE-EechhhHHHHhcCh---h
Q 004337 283 AVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVV-IMNHISLVEILMDV---N 358 (760)
Q Consensus 283 A~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V-~~~~~~LVe~lmD~---~ 358 (760)
-++.+++|+.++..+ .-|-...+.. +-.-|.+..+ +...-.-|..+++ ...+..+.+.|+|. .
T Consensus 8 ~~~~~~~~~~~~~~~-~~W~~~~~~~----gi~iy~r~~~--------~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~ 74 (222)
T cd08871 8 TDADFEEFKKLCDST-DGWKLKYNKN----NVKVWTKNPE--------NSSIKMIKVSAIFPDVPAETLYDVLHDPEYRK 74 (222)
T ss_pred CHHHHHHHHHHhcCC-CCcEEEEcCC----CeEEEEeeCC--------CCceEEEEEEEEeCCCCHHHHHHHHHChhhhh
Confidence 468899999999754 4797654321 0111222221 2222445666665 57889999999995 7
Q ss_pred hHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCCCC-C--C
Q 004337 359 QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNLR-P--S 435 (760)
Q Consensus 359 ~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~-~--~ 435 (760)
+|-..|- .+..++-+. ....++|..+..|-| |..|||.++|..+..+ |..+|+..|++.-. | .
T Consensus 75 ~Wd~~~~----e~~~ie~~d--------~~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~ 140 (222)
T cd08871 75 TWDSNMI----ESFDICQLN--------PNNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRK 140 (222)
T ss_pred hhhhhhc----eeEEEEEcC--------CCCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCC
Confidence 7777663 344555443 223788988999988 8999999999998776 88899999987432 1 2
Q ss_pred CCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004337 436 PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCERLASVMATNIP 511 (760)
Q Consensus 436 ~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~cerla~~~~~~~p 511 (760)
.++|.....+|++|++.+++.|+|||+-|++..-+ +|. -+++....-++-.++..|+++|+.....++..-|
T Consensus 141 g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~ 212 (222)
T cd08871 141 GFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNP 212 (222)
T ss_pred CeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67999999999999999999999999999998765 443 3466667777889999999999999988877655
No 31
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.00 E-value=1.3e-08 Score=103.83 Aligned_cols=191 Identities=15% Similarity=0.182 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcC---
Q 004337 280 IELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMD--- 356 (760)
Q Consensus 280 ~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD--- 356 (760)
-.+|..|.+|++++.. .+.-|....+. ++.+.+.+. +. ++..-.-|..|.+..++.++++.|+|
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~~W~~~~~~--------~~i~v~~~~-~~---~~~~~~~k~~~~i~~~~~~v~~~l~d~~~ 70 (206)
T cd08867 4 KVIAEKLANEALQYIN-DTDGWKVLKTV--------KNITVSWKP-ST---EFTGHLYRAEGIVDALPEKVIDVIIPPCG 70 (206)
T ss_pred HHHHHHHHHHHHHHhc-CcCCcEEEEcC--------CCcEEEEec-CC---CCCCEEEEEEEEEcCCHHHHHHHHHhcCc
Confidence 4689999999999987 44779765432 112222210 11 12222358889999999999999998
Q ss_pred --hhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhc-CCCCccCceeEEEEeeeeeCCceEEEEEEecCCC-
Q 004337 357 --VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQV-PSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNL- 432 (760)
Q Consensus 357 --~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v-~SPLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~- 432 (760)
+.+|...| ..+..++-|.. ...++|..+-- +.++|..|||.++||.++.++|.++++-.|++.-
T Consensus 71 ~~r~~Wd~~~----~~~~~le~id~--------~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~ 138 (206)
T cd08867 71 GLRLKWDKSL----KHYEVLEKISE--------DLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPE 138 (206)
T ss_pred cccccccccc----cceEEEEEeCC--------CeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCC
Confidence 47797665 35556665541 12455553221 2357999999999999999999999999999533
Q ss_pred -CCC-CCcceeecCccceEEecC--CCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHH
Q 004337 433 -RPS-PAVRCRRRPSGCLIQEMP--NGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQC 499 (760)
Q Consensus 433 -~~~-~~~~~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~c 499 (760)
.+. .++|+...++|++|++.+ ++.|+|||+-|++..-+ +| +-++++.++=+.--|+..|++|.
T Consensus 139 ~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 139 RPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IP---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-Cc---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 222 679999999999999886 57899999999987643 33 45688888888888999998764
No 32
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.99 E-value=9e-09 Score=105.10 Aligned_cols=193 Identities=17% Similarity=0.258 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHH-hcC-
Q 004337 279 IIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEI-LMD- 356 (760)
Q Consensus 279 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~-lmD- 356 (760)
...+++.|++|++.+.. ++-|-...+... +..=|.|..| | .+ -.-|..++|...+..+++. |.|
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~---~i~i~~r~~~---~---~~---~~~k~~~~i~~~~~~v~~~l~~d~ 71 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTW---GDVVYSRNVP---G---VG---KVFRLTGVLDCPAEFLYNELVLNV 71 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCC---CCEEEEEEcC---C---Cc---eEEEEEEEEcCCHHHHHHHHHcCc
Confidence 56789999999999954 558976543100 0112333332 2 12 4578889999999999764 445
Q ss_pred --hhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcC-CCCccCceeEEEEeeeeeCCceEEEEEEecCCC-
Q 004337 357 --VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVP-SPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNL- 432 (760)
Q Consensus 357 --~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~-SPLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~- 432 (760)
+.+|-..|- ..++|..-. +...++|.-+..+ .++|..|||.++|+.++.+ |.++|+..|++.-
T Consensus 72 ~~~~~Wd~~~~-------~~~~i~~~d-----~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~ 138 (208)
T cd08868 72 ESLPSWNPTVL-------ECKIIQVID-----DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPA 138 (208)
T ss_pred cccceecCccc-------ceEEEEEec-----CCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCCC
Confidence 467877773 344444432 2234566444333 3689999999999999866 6799999998732
Q ss_pred CC--CCCcceeecCccceEEecCC--CceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHHHH
Q 004337 433 RP--SPAVRCRRRPSGCLIQEMPN--GYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCERL 502 (760)
Q Consensus 433 ~~--~~~~~~~rlPSGclIq~~~n--G~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~cerl 502 (760)
.| ..++|+...++|++|+++++ +.|+|||+-|++..-+ +|. -++++.+.-+.-.|++.|+++|+.|
T Consensus 139 ~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 139 MPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred CCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-Ccc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 22 26899999999999999987 6899999999987755 333 2388888889999999999998753
No 33
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.89 E-value=7.6e-10 Score=113.56 Aligned_cols=64 Identities=25% Similarity=0.371 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
+.++|+.|+.|+..|+++||+.|++.+||+...|+.||..+++++..|++||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 4456889999999999999999999999999999999999999999999999999999998543
No 34
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.79 E-value=1.9e-07 Score=95.91 Aligned_cols=190 Identities=17% Similarity=0.247 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcCh--
Q 004337 280 IELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMDV-- 357 (760)
Q Consensus 280 ~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~-- 357 (760)
.+++++|+++++.+-+ .+..|-...++ ++.+++.+...+. .| =.-|.-|+|..++.+|++.|+|.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~~W~~~~~~--------~~i~v~~~~~~~~-~~---~~~k~e~~i~~s~~~~~~~l~d~~~ 70 (208)
T cd08903 4 AELAESVADKMLLYRR-DESGWKTCRRT--------NEVAVSWRPSAEF-AG---NLYKGEGIVYATLEQVWDCLKPAAG 70 (208)
T ss_pred HHHHHHHHHHHHhhhc-cccCCEEEEcC--------CCEEEEeeecCCC-CC---cEEEEEEEecCCHHHHHHHHHhccc
Confidence 5789999999999974 66789765432 2333342211111 11 12788899999999999999965
Q ss_pred ---hhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCC---CccCceeEEEEeeeeeCCceEEEEEEecCC
Q 004337 358 ---NQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSP---LVPTRESYYVRYCKQHGEGTWAVVDVSLDN 431 (760)
Q Consensus 358 ---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP---Lvp~Re~~fLRyckq~~~g~w~VvDvS~d~ 431 (760)
.+|-..|- .++-++-|. . ...+.|. ..+.| +|.+|||..+|+.++.++|.++|.-.|+..
T Consensus 71 ~~r~~W~~~~~----~~~vle~id---~-----~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h 136 (208)
T cd08903 71 GLRVKWDQNVK----DFEVVEAIS---D-----DVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEH 136 (208)
T ss_pred hhhhhhhhccc----cEEEEEEec---C-----CEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccC
Confidence 68988883 334444443 1 1233443 45555 799999999999999999998887778765
Q ss_pred -CCC--CCCcceeecCccceEEecCC--CceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004337 432 -LRP--SPAVRCRRRPSGCLIQEMPN--GYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (760)
Q Consensus 432 -~~~--~~~~~~~rlPSGclIq~~~n--G~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ce 500 (760)
.-| ..++|++..|+|++|.+.++ +.|+|+|+-|++..- .+| +.++++.++=...-.+..|+++..
T Consensus 137 ~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 137 PLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSG-YLP---QTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCC-CcC---HHHHHHHhhHHHHHHHHHHHHHHh
Confidence 222 27899999999999999964 589999998887642 455 345655555555567777766543
No 35
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.78 E-value=1.3e-07 Score=97.05 Aligned_cols=169 Identities=13% Similarity=0.156 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcChhh
Q 004337 280 IELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMDVNQ 359 (760)
Q Consensus 280 ~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~~ 359 (760)
..|+++|++|++++-+ +.-.|-.-..+ .+..++.+. ...+.+---|..|+|..++.+|+|.+.|.+.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~k~~--------~~~~v~~k~----~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~ 70 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVVKTS--------KKITVSWKP----SRKYHGNLYRVEGIIPESPAKLIQFMYQPEH 70 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEEecC--------CceEEEEEE----cCCCCceEEEEEEEecCCHHHHHHHHhccch
Confidence 4689999999999977 55788664332 111111110 1122335678999999999999999998765
Q ss_pred HhhhhccccccceEeeEeecccCCCCCCeeeeeehhhh-cCCCCccCceeEEEEeeeeeCCceEEEEEEecCCCC--C-C
Q 004337 360 WSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQ-VPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNLR--P-S 435 (760)
Q Consensus 360 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~-v~SPLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~--~-~ 435 (760)
..+--+ .+.....++-|. +...+.|.-++ .+-++|-+|||..+||.++.++|.++|+..|++.-. + .
T Consensus 71 r~~Wd~-~~~~~~iie~Id--------~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~ 141 (204)
T cd08904 71 RIKWDK-SLQVYKMLQRID--------SDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSS 141 (204)
T ss_pred hhhhcc-cccceeeEEEeC--------CCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCC
Confidence 543333 334455555544 22246665554 356789999999999999999999999999997543 2 2
Q ss_pred CCcceeecCccceEEecCCC--ceEEEEEEeeeecCc
Q 004337 436 PAVRCRRRPSGCLIQEMPNG--YSKVTWVEHVEVDDR 470 (760)
Q Consensus 436 ~~~~~~rlPSGclIq~~~nG--~skVtwVeH~e~d~~ 470 (760)
.++|++..|+||+|++.+++ +|++||+-++++.-+
T Consensus 142 g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 142 NYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 68999999999999999875 899999999777644
No 36
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.68 E-value=1.5e-08 Score=111.85 Aligned_cols=63 Identities=30% Similarity=0.603 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
+++.+|.|+.|+..|+..||+.|+.++||+...|++||+++++++..|++||+|||+|++|+.
T Consensus 173 ~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 173 QRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred cccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcc
Confidence 445677789999999999999999999999999999999999999999999999999999864
No 37
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.64 E-value=4.9e-07 Score=92.91 Aligned_cols=125 Identities=19% Similarity=0.244 Sum_probs=96.7
Q ss_pred cceeeecceEEEechhhH-HHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEE
Q 004337 333 KCEASRETAVVIMNHISL-VEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYV 411 (760)
Q Consensus 333 ~~EAsR~~g~V~~~~~~L-Ve~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fL 411 (760)
..-+-|....|.-.+..+ -.++-++..|-..|- .+++++-|. +...+.|--+.-|-|+ |.|||+.+
T Consensus 50 ~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~----~~~~ie~ld--------~~tdi~~y~~~~~~P~-~~RD~v~~ 116 (205)
T cd08909 50 PLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDFL----QWKVVETLD--------KQTEVYQYVLNCMAPH-PSRDFVVL 116 (205)
T ss_pred ceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcc----eeEEEEEeC--------CCcEEEEEEeecCCCC-CCCEEEEE
Confidence 345667777777767766 446778888888873 455555554 2235666666666675 99999999
Q ss_pred Eeeee-eCCceEEEEEEecCCCCC--CCCcceeecCccceEEecCCCceEEEEEEeeeecCc
Q 004337 412 RYCKQ-HGEGTWAVVDVSLDNLRP--SPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDR 470 (760)
Q Consensus 412 Ryckq-~~~g~w~VvDvS~d~~~~--~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~ 470 (760)
|+-++ +++|..+|+..|++.-.. ..++|+..+-+||+|+++++|.|+||++-|++..-+
T Consensus 117 R~w~~~~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 117 RSWRTDLPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred EEEEEeCCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 99765 479999999999997643 367999999999999999999999999999987544
No 38
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.56 E-value=1.4e-06 Score=88.65 Aligned_cols=161 Identities=19% Similarity=0.254 Sum_probs=117.3
Q ss_pred HHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcC-hhhHhh
Q 004337 284 VAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMD-VNQWST 362 (760)
Q Consensus 284 ~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD-~~~W~~ 362 (760)
+.+.++|++-+...+.-|.-..+.. +..=|.|..| .+....+=|..++|...+.++++.|+| +.+|-.
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~----gi~I~~k~~~-------~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd~ 72 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSD----HVELAFKKVD-------DGHPLRLWRASTEVEAPPEEVLQRILRERHLWDD 72 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCC----cEEEEEEeCC-------CCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccch
Confidence 5678899999998899997654310 1112222221 133445678888999899999986666 456777
Q ss_pred hhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeee-eCCceEEEEEEecCC--CCCCCCcc
Q 004337 363 VFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQ-HGEGTWAVVDVSLDN--LRPSPAVR 439 (760)
Q Consensus 363 ~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq-~~~g~w~VvDvS~d~--~~~~~~~~ 439 (760)
.|- +++.++-|+ . ...+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++. ..+..++|
T Consensus 73 ~~~----~~~vie~id---~-----~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~g~VR 139 (197)
T cd08869 73 DLL----QWKVVETLD---E-----DTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPLGGVR 139 (197)
T ss_pred hhh----eEEEEEEec---C-----CcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCCCCEE
Confidence 762 344444443 2 23578877777877 59999999998875 678899999999953 33338899
Q ss_pred eeecCccceEEecCCCceEEEEEEeeeec
Q 004337 440 CRRRPSGCLIQEMPNGYSKVTWVEHVEVD 468 (760)
Q Consensus 440 ~~rlPSGclIq~~~nG~skVtwVeH~e~d 468 (760)
++.+++|++|++.++|.|+|||+-|++.-
T Consensus 140 ~~~~~~g~~i~p~~~~~t~vty~~~~Dp~ 168 (197)
T cd08869 140 AVVLASRYLIEPCGSGKSRVTHICRVDLR 168 (197)
T ss_pred EEEEeeeEEEEECCCCCeEEEEEEEECCC
Confidence 99999999999999999999999999864
No 39
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.53 E-value=1.7e-06 Score=88.90 Aligned_cols=189 Identities=14% Similarity=0.244 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecC-C-CCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhc-
Q 004337 279 IIELAVAAMEELIRMAQMGEPLWMTSL-D-GTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILM- 355 (760)
Q Consensus 279 ~~~lA~~Am~El~~la~~~eplWi~~~-~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lm- 355 (760)
-..++.+|++|++++.+ .+..|-... + .+..| |.+.+| +. | -+-|.-++|..++.+|++.|.
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~gi~v-----~s~~~~---~~---~---k~~k~e~~i~~~~~~l~~~l~~ 70 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENGDKV-----LSKVVP---DI---G---KVFRLEVVVDQPLDNLYSELVD 70 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCCCEE-----EEEEcC---CC---C---cEEEEEEEecCCHHHHHHHHHh
Confidence 45789999999999986 666897652 2 11111 234443 11 1 456677899999999995555
Q ss_pred C---hhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCC--CccCceeEEEEeeeeeCCceEEEEEEecC
Q 004337 356 D---VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSP--LVPTRESYYVRYCKQHGEGTWAVVDVSLD 430 (760)
Q Consensus 356 D---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--Lvp~Re~~fLRyckq~~~g~w~VvDvS~d 430 (760)
| ..+|...|- -.++|..... .--++|. ..++.| +|..|||..+|+.++.+++. +++..|.+
T Consensus 71 d~e~~~~W~~~~~-------~~~vl~~id~-----~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~ 136 (209)
T cd08905 71 RMEQMGEWNPNVK-------EVKILQRIGK-----DTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATH 136 (209)
T ss_pred chhhhceecccch-------HHHHHhhcCC-----CceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEeec
Confidence 4 267777763 3345543322 1245664 667766 79999999999999986654 45566654
Q ss_pred CC--CCC-CCcceeecCccceEEecCC--CceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004337 431 NL--RPS-PAVRCRRRPSGCLIQEMPN--GYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (760)
Q Consensus 431 ~~--~~~-~~~~~~rlPSGclIq~~~n--G~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ce 500 (760)
.- .+. .++|++..++|++|+++++ |.|+|||+-|++..-+ +|. .|++..++=..--++..|+++.+
T Consensus 137 ~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 137 FGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred CCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 22 222 6899999999999999988 9999999999987755 443 45777777777788999987765
No 40
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.51 E-value=4.8e-08 Score=102.41 Aligned_cols=61 Identities=25% Similarity=0.488 Sum_probs=57.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
.|||+|+.+..-..+.||.+|...+.|+.+....+|++|+|....|+|||+|+|.|.||..
T Consensus 308 ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 308 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred ccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhh
Confidence 4688899999999999999999999999999999999999999999999999999999843
No 41
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.39 E-value=2.8e-06 Score=99.69 Aligned_cols=126 Identities=21% Similarity=0.363 Sum_probs=102.4
Q ss_pred eeeecceEEEechhhHHHHhcChh----hHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhh--cCCCCccCcee
Q 004337 335 EASRETAVVIMNHISLVEILMDVN----QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQ--VPSPLVPTRES 408 (760)
Q Consensus 335 EAsR~~g~V~~~~~~LVe~lmD~~----~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~--v~SPLvp~Re~ 408 (760)
-+=|+.|+|..++.+|.|.+|+.+ +|=..| ..++-++-| +|...++|.-++ .+...+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~----~~~~vIE~I--------D~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSF----QYGSLVEEV--------DGHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcc----cceEEEEEe--------cCCeEEEEEEeccccccCccCccee
Confidence 567889999999999999999766 676666 345555544 355678887775 45567777999
Q ss_pred EEEEeeeeeCCceEEEEEEecCCCCC---CCCcceeecCccceEEecC--C--CceEEEEEEeeeecCccc
Q 004337 409 YYVRYCKQHGEGTWAVVDVSLDNLRP---SPAVRCRRRPSGCLIQEMP--N--GYSKVTWVEHVEVDDRGV 472 (760)
Q Consensus 409 ~fLRyckq~~~g~w~VvDvS~d~~~~---~~~~~~~rlPSGclIq~~~--n--G~skVtwVeH~e~d~~~v 472 (760)
+++||-+..+||+++|+=+|+..-.. ..|+|++..|+||+|.+++ + -.|.|+|+-|++..-|..
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 99999999999999999999875432 2689999999999999964 3 379999999999998874
No 42
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.32 E-value=1.5e-05 Score=82.12 Aligned_cols=192 Identities=14% Similarity=0.182 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecCC--CCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHH-HHhc
Q 004337 279 IIELAVAAMEELIRMAQMGEPLWMTSLD--GTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLV-EILM 355 (760)
Q Consensus 279 ~~~lA~~Am~El~~la~~~eplWi~~~~--~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LV-e~lm 355 (760)
....+.+||++|.++... +..|.-... .+..| |.+..| +.. ..| |.-++|...+..|. +.|.
T Consensus 6 ~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~gi~V-----~s~~~~---~~~-~~f-----k~~~~v~~~~~~l~~~ll~ 70 (209)
T cd08906 6 YVRQGKEALAVVEQILAQ-EENWKFEKNNDNGDTV-----YTLEVP---FHG-KTF-----ILKAFMQCPAELVYQEVIL 70 (209)
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCEEEEecCCCCEE-----EEeccC---CCC-cEE-----EEEEEEcCCHHHHHHHHHh
Confidence 456799999999999764 457974321 11111 111121 111 223 66677778888885 6788
Q ss_pred ChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCC--CccCceeEEEEeeeeeCCceEEEEEEecCCC-
Q 004337 356 DVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSP--LVPTRESYYVRYCKQHGEGTWAVVDVSLDNL- 432 (760)
Q Consensus 356 D~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--Lvp~Re~~fLRyckq~~~g~w~VvDvS~d~~- 432 (760)
|.+...+=.+.+ ...+||..... .--+.| +.-.|.+ .|..|||-.+|+.++.+++ ++++..|++.-
T Consensus 71 D~~~~~~W~~~~----~~~~vi~~~~~-----~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~ 139 (209)
T cd08906 71 QPEKMVLWNKTV----SACQVLQRVDD-----NTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSH 139 (209)
T ss_pred ChhhccccCccc----hhhhheeeccC-----CcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCC
Confidence 875444433322 23445544322 123557 6666664 7999999999999998888 56777887532
Q ss_pred -CCC-CCcceeecCccceEEec--CCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004337 433 -RPS-PAVRCRRRPSGCLIQEM--PNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (760)
Q Consensus 433 -~~~-~~~~~~rlPSGclIq~~--~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ce 500 (760)
.+. .++|.+..++|++|++. .+|.|+|||+-|+|..- .+| +.|++..++=..--.+..|+++.+
T Consensus 140 ~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP---~~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 140 KPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG-RLP---RYLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC-CCC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 78999999999999985 57799999999998765 333 245766666666667777766544
No 43
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.25 E-value=7.2e-07 Score=93.45 Aligned_cols=51 Identities=24% Similarity=0.543 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 97 HTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 97 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
|...-...|..+|..++||+..++.+||+.+||+..||-.||.|||.|+|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 566667899999999999999999999999999999999999999999984
No 44
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.22 E-value=3.1e-05 Score=79.27 Aligned_cols=191 Identities=15% Similarity=0.163 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcC---
Q 004337 280 IELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMD--- 356 (760)
Q Consensus 280 ~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD--- 356 (760)
..+|.++-+++++--+.++-.|-.....+..+. |. .| +..|.+---|.-|+|.-.+..|++.+-+
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~~~v----~~--k~------~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~ 71 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKKSKDVTV----WR--KP------SEEFGGYLYKAQGVVEDVYNRIVDHIRPGPY 71 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEeCCCEEE----EE--ec------CCcCCCceEEEEEEecCCHHHHHHHHhcccc
Confidence 467888888899987779999976432111110 00 11 1123334557778888899999999999
Q ss_pred hhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCCCCCC-
Q 004337 357 VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNLRPS- 435 (760)
Q Consensus 357 ~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~~- 435 (760)
+.+|=+.+ . ..+||..-. .+++-.-|.=.-.+-++|-+|||.-+||+++.++|. ..|=||++.-...
T Consensus 72 r~~Wd~~v----~---~~~Iie~Id----~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp 139 (202)
T cd08902 72 RLDWDSLM----T---SMDIIEEFE----ENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP 139 (202)
T ss_pred hhcccchh----h---heeHhhhhc----CCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC
Confidence 55998876 3 344444322 223222255556677899999999999999999998 7778998864332
Q ss_pred CCcceeecCccceEEecCCC--ceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHH
Q 004337 436 PAVRCRRRPSGCLIQEMPNG--YSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQ 498 (760)
Q Consensus 436 ~~~~~~rlPSGclIq~~~nG--~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ 498 (760)
.++|++..|+||++.+.+|| .|+.||+-+.|+.-+ |=+-++++.++=..=-....|+++
T Consensus 140 g~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~----LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 140 NFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM----LPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred CeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC----ccHHHHHHHhhHHHHHHHHHHHHh
Confidence 78999999999999999998 678889999777644 334456555554444455555543
No 45
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.10 E-value=2.5e-05 Score=80.49 Aligned_cols=128 Identities=19% Similarity=0.215 Sum_probs=95.0
Q ss_pred CCCCCcceeeecceEEEechhhHHHHhcCh---hhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCC-c
Q 004337 328 KPTGFKCEASRETAVVIMNHISLVEILMDV---NQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPL-V 403 (760)
Q Consensus 328 ~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPL-v 403 (760)
+..+|.+ -++|...+.+|++.|.|. .+|-.++ .+.+||..-. ....++|..+..|=|+ +
T Consensus 43 ~~~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~~~-------~~~~vl~~~~-----~d~~i~y~~~~~Pwp~~~ 105 (205)
T cd08874 43 TYHGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDTMI-------KTARIHKTFT-----EDICLVYLVHETPLCLLK 105 (205)
T ss_pred CcceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHHhh-------hheeeeeecC-----CCeEEEEEEecCCCCCCC
Confidence 5556664 347788999999999886 5677776 5677777433 2335777776666555 3
Q ss_pred cCceeEEEEeeeeeCCceEEEEEEecCC-CCC--C-CCcceeecCccceEEec---CCCceEEEEEEeeeecCcccc
Q 004337 404 PTRESYYVRYCKQHGEGTWAVVDVSLDN-LRP--S-PAVRCRRRPSGCLIQEM---PNGYSKVTWVEHVEVDDRGVH 473 (760)
Q Consensus 404 p~Re~~fLRyckq~~~g~w~VvDvS~d~-~~~--~-~~~~~~rlPSGclIq~~---~nG~skVtwVeH~e~d~~~vh 473 (760)
+.|||..+|-....+++.. |.=.|++. ..| . .++|.+.+++|++|+++ ++|.|+||.+-|+|.--..+|
T Consensus 106 ~~RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 106 QPRDFCCLQVEAKEGELSV-VACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred CCCeEEEEEEEEECCCcEE-EEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 9999999995555555544 66688876 433 2 58999999999999999 999999999999997633444
No 46
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.07 E-value=6.2e-05 Score=77.56 Aligned_cols=162 Identities=19% Similarity=0.288 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhhcCCCCceeecCC-CCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhc-Chhh
Q 004337 282 LAVAAMEELIRMAQMGEPLWMTSLD-GTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILM-DVNQ 359 (760)
Q Consensus 282 lA~~Am~El~~la~~~eplWi~~~~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lm-D~~~ 359 (760)
.-+..+++|++.|..--=-|+.... ...|. .|.|. ..|-..-.-|....+...+..++..|+ |+.+
T Consensus 10 ~~~~~~~~l~~e~~~k~k~w~~~~~~~~~el----~~~k~--------~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~ 77 (204)
T cd08908 10 FLQDCVDGLFKEVKEKFKGWVSYSTSEQAEL----SYKKV--------SEGPPLRLWRTTIEVPAAPEEILKRLLKEQHL 77 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCcEEE----EEecc--------CCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHH
Confidence 3457778888888755556765322 11111 11221 123233455666667777778775444 4677
Q ss_pred HhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeee-eeCCceEEEEEEecCCCC-CCCC
Q 004337 360 WSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCK-QHGEGTWAVVDVSLDNLR-PSPA 437 (760)
Q Consensus 360 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyck-q~~~g~w~VvDvS~d~~~-~~~~ 437 (760)
|-..+- .++.++-|+ .. -.+.|..+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.-. |-.+
T Consensus 78 Wd~~~~----e~~vIe~ld---~~-----~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~~ 144 (204)
T cd08908 78 WDVDLL----DSKVIEILD---SQ-----TEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVAG 144 (204)
T ss_pred HHHHhh----heEeeEecC---CC-----ceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcCc
Confidence 888873 455656555 21 1578888889988 7999999997665 478999999999986432 2246
Q ss_pred cceeecCccceEEecCCCceEEEEEEeeeec
Q 004337 438 VRCRRRPSGCLIQEMPNGYSKVTWVEHVEVD 468 (760)
Q Consensus 438 ~~~~rlPSGclIq~~~nG~skVtwVeH~e~d 468 (760)
+|++.+-+|++|+++++|.|+||.+-|++--
T Consensus 145 VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg 175 (204)
T cd08908 145 VRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR 175 (204)
T ss_pred eEEEEEeeEEEEEECCCCcEEEEEEEEeCCC
Confidence 9999999999999999999999999999754
No 47
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.05 E-value=0.00011 Score=73.90 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=106.3
Q ss_pred eeecceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeee
Q 004337 336 ASRETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCK 415 (760)
Q Consensus 336 AsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyck 415 (760)
.-|.+++|..++.++.+++.|.+.|.+-=|.+ ...+||.....+ -.++|..+..+=| |..|||.+.|...
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~----~~~~vie~~~~~-----~~i~~~~~~~p~p-vs~Rdfv~~~~~~ 111 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPNC----KESRVLKRTDDN-----ERSVYTVIDLPWP-VKDRDMVLRSTTE 111 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhc----ceEEEeecCCCC-----cEEEEEEEecccc-cCCceEEEEEEEE
Confidence 55888899999999999999988876655543 344566543221 2456666665544 7899999876544
Q ss_pred ee-CCceEEEEEEecCCCCC--CCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHH
Q 004337 416 QH-GEGTWAVVDVSLDNLRP--SPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWV 492 (760)
Q Consensus 416 q~-~~g~w~VvDvS~d~~~~--~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWl 492 (760)
.. ++|..+|.=.|.+.-.| ..++|++.+.+|+.|++.++|.|+||++-|++..-+-..-+.+.+. .=+...++
T Consensus 112 ~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~----~~~~~~~l 187 (195)
T cd08876 112 QDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFA----KDAPYNTL 187 (195)
T ss_pred EcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHH----HHHHHHHH
Confidence 33 36777777667654322 2678999999999999999999999999999887543334444444 34566888
Q ss_pred HHHHHHH
Q 004337 493 ATLDRQC 499 (760)
Q Consensus 493 a~LqR~c 499 (760)
++|.++|
T Consensus 188 ~~l~~~~ 194 (195)
T cd08876 188 ENLRKQL 194 (195)
T ss_pred HHHHHhh
Confidence 8887665
No 48
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.97 E-value=0.00013 Score=75.20 Aligned_cols=147 Identities=19% Similarity=0.304 Sum_probs=109.9
Q ss_pred eeecceEEE-echhhHHHHhcChh---hHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEE
Q 004337 336 ASRETAVVI-MNHISLVEILMDVN---QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYV 411 (760)
Q Consensus 336 AsR~~g~V~-~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fL 411 (760)
.=|+.+.+. ..+..|.++|+|.+ +|-..+-. .++.++ .+ -.++|-.+..|-| |..||+.++
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~------~~~~~~-------~~-~~i~y~~~k~PwP-vs~RD~V~~ 114 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE------LYEKEC-------DG-ETVIYWEVKYPFP-LSNRDYVYI 114 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh------heeecC-------CC-CEEEEEEEEcCCC-CCCceEEEE
Confidence 577788887 79999999999964 56665532 122221 12 2678999999999 999999999
Q ss_pred Eeeee-eCCc--eEEEEEEecCCCC-C--CCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhh
Q 004337 412 RYCKQ-HGEG--TWAVVDVSLDNLR-P--SPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNA 485 (760)
Q Consensus 412 Ryckq-~~~g--~w~VvDvS~d~~~-~--~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~a 485 (760)
|-... ..+| .|+|+..|.+.-. | ..++|+...-+|++|++..++.|+|+++-|.+-. ..+|. -+++.-..
T Consensus 115 r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~---wlvN~~~~ 190 (207)
T cd08910 115 RQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPS---WLINWAAK 190 (207)
T ss_pred EEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchH---HHHHHHHH
Confidence 64443 3344 6898888875321 1 2789999999999999998889999999998853 24543 25777788
Q ss_pred HHHHHHHHHHHHHHHH
Q 004337 486 FGAKRWVATLDRQCER 501 (760)
Q Consensus 486 fgA~rWla~LqR~cer 501 (760)
.+...|+..|+..|..
T Consensus 191 ~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 191 NGVPNFLKDMQKACQN 206 (207)
T ss_pred HhhHHHHHHHHHHHhc
Confidence 8999999999888853
No 49
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.96 E-value=0.00029 Score=72.33 Aligned_cols=191 Identities=16% Similarity=0.212 Sum_probs=133.9
Q ss_pred HHHHHHhhcCCC--CceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEE-EechhhHHHHhcCh---hhH
Q 004337 287 MEELIRMAQMGE--PLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVV-IMNHISLVEILMDV---NQW 360 (760)
Q Consensus 287 m~El~~la~~~e--plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V-~~~~~~LVe~lmD~---~~W 360 (760)
++||+.+.+.+. .-|-...+....-....-|.|.-+ |...-.=|..+++ .+++..|.+.|+|. .+|
T Consensus 8 ~~~~~~~~~~~~~~~~W~~~~~k~~~~~~i~vy~r~~~--------~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~W 79 (209)
T cd08870 8 LRDLVQELQEGAEGQAWQQVMDKSTPDMSYQAWRRKPK--------GTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKW 79 (209)
T ss_pred HHHHHHHhcCcCCCCcceEhhhccCCCceEEEEecccC--------CCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhh
Confidence 446666655443 468665432111111222444322 1122356777777 56999999999995 467
Q ss_pred hhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCC-CCCC-CCc
Q 004337 361 STVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDN-LRPS-PAV 438 (760)
Q Consensus 361 ~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~w~VvDvS~d~-~~~~-~~~ 438 (760)
-..| ...++|..... .| ..++|-.+..|-|+ -.||+.+.|-..+..+|..+|+=.|++. ..|. .++
T Consensus 80 d~~~-------~~~~~le~~~~---~~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~~~v 147 (209)
T cd08870 80 DETV-------IEHETLEEDEK---SG-TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPYPSVPRSGRK 147 (209)
T ss_pred hhhe-------eeEEEEEecCC---CC-cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCCCcE
Confidence 6666 23455543211 02 47899999999988 8999999997777779999998888875 3233 689
Q ss_pred ceeecCccceEEec--CCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHHH
Q 004337 439 RCRRRPSGCLIQEM--PNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCER 501 (760)
Q Consensus 439 ~~~rlPSGclIq~~--~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~cer 501 (760)
|.+..=||++|++. .+|.++++++=|.+- ...+|. -|++.....|...|+..|.+.|..
T Consensus 148 Rv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 148 RVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred EEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCH---HHHHHHHHhhhHHHHHHHHHHHhc
Confidence 99999999999999 789999999999863 234554 468888999999999999988853
No 50
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.89 E-value=7.9e-06 Score=85.10 Aligned_cols=58 Identities=22% Similarity=0.536 Sum_probs=53.6
Q ss_pred CCCCCCCChHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFF---KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
+|+|+.|+..-.++|..+| ..+|||+.+.+++||++++++..||..||.|+|-+.||-
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKN 249 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhh
Confidence 5667789999999999999 458999999999999999999999999999999999983
No 51
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.85 E-value=0.00033 Score=72.07 Aligned_cols=196 Identities=17% Similarity=0.148 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcChh
Q 004337 279 IIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMDVN 358 (760)
Q Consensus 279 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~ 358 (760)
+++=+...|.|+++..+. +.-|....+. ++.++|-+. .+ +-..-+-|.-|++..+...+.++|.|.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~--------~~i~v~~r~-~~---~~~~~~~k~e~~i~~~~~~~~~vl~d~~ 69 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKES--------EGIRVYYKF-EP---DGSLLSLRMEGEIDGPLFNLLALLNEVE 69 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccC--------CCeEEEEEe-CC---CCCEEEEEEEEEecCChhHeEEEEehhh
Confidence 344566788999888775 5579876542 223333211 01 1124677888999999999999999998
Q ss_pred hHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEE-Eeeeee-CCceEEEEEEecCCCC---
Q 004337 359 QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYV-RYCKQH-GEGTWAVVDVSLDNLR--- 433 (760)
Q Consensus 359 ~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fL-Ryckq~-~~g~w~VvDvS~d~~~--- 433 (760)
...+-+|.. ..+..++.++- .-++.|..+-+|-| +..||+.+. +.+.++ ++|..+|+=.|++.-.
T Consensus 70 ~~~~W~p~~-~~~~~l~~~~~--------~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~ 139 (215)
T cd08877 70 LYKTWVPFC-IRSKKVKQLGR--------ADKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFL 139 (215)
T ss_pred hHhhhcccc-eeeEEEeecCC--------ceEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccc
Confidence 777777653 34455444431 12577777777777 888999985 556777 8999999999997321
Q ss_pred --------C-C-CCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004337 434 --------P-S-PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (760)
Q Consensus 434 --------~-~-~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ce 500 (760)
+ . .++|.....+|++|+++++|.|+|+++-|++-.-+-||.= |++...--.+...+..|+++|+
T Consensus 140 ~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~---liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 140 KLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKS---LLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred cccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 2 6799999999999999999999999999966332226653 4555555566777788877775
No 52
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.78 E-value=0.00017 Score=74.04 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhcCCCCceeecCCC-CccccChHHHhhcCCCCCCCCCCCCcceeeecce-EEEechhhHHHHhcChhhH
Q 004337 283 AVAAMEELIRMAQMGEPLWMTSLDG-TAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETA-VVIMNHISLVEILMDVNQW 360 (760)
Q Consensus 283 A~~Am~El~~la~~~eplWi~~~~~-~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g-~V~~~~~~LVe~lmD~~~W 360 (760)
-+..+++|++-+....=-|+..... +.|+- .|. . .+...++ -=|.+. +-...+.-|-++|.|+..|
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~vev~-----~kk----~-~d~~~l~--lwk~s~ei~~~p~~vl~rvL~dR~~W 78 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDNTELA-----CKK----V-GDGHPLR--LWKVSTEVEAPPSVVLQRVLRERHLW 78 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCCcEEE-----EEe----C-CCCCceE--EEEEEEEecCCCHHHHHHHhhchhhh
Confidence 4577889999998777789874321 11211 110 0 1111111 111111 1223566678999999999
Q ss_pred hhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeee-eeCCceEEEEEEecCCCCCC--CC
Q 004337 361 STVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCK-QHGEGTWAVVDVSLDNLRPS--PA 437 (760)
Q Consensus 361 ~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyck-q~~~g~w~VvDvS~d~~~~~--~~ 437 (760)
=+.+ -+.++|+.|..- + ++-|=-+.-| +.+|.|||.+||.-+ .+..|.-+|+.+|++.-..- .-
T Consensus 79 D~~m----~e~~~Ie~Ld~n-----~---dI~yY~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g 145 (205)
T cd08907 79 DEDL----LHSQVIEALENN-----T---EVYHYVTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG 145 (205)
T ss_pred hHHH----HhhhhheeecCC-----C---EEEEEEecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC
Confidence 9887 366788877521 1 2222222223 568999999999864 46778999999999865432 34
Q ss_pred cceeecCccceEEecCCCceEEEEEEeeeecCc
Q 004337 438 VRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDR 470 (760)
Q Consensus 438 ~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~ 470 (760)
+|+--+=|||||++++.|.|+||-+-|++..-+
T Consensus 146 VRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 146 VRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred eEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 999999999999999999999999999987544
No 53
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.77 E-value=1.1e-05 Score=62.27 Aligned_cols=34 Identities=32% Similarity=0.691 Sum_probs=29.0
Q ss_pred cCCCCCHHHHHHHHHHhCCCchhhhcccccchhh
Q 004337 111 ECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQ 144 (760)
Q Consensus 111 ~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK 144 (760)
.+|||+..++.+||+++||+.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999999875
No 54
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.70 E-value=3.8e-05 Score=87.50 Aligned_cols=58 Identities=29% Similarity=0.367 Sum_probs=54.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (760)
+.||.|..||..|.+.|..+|+++++|+.+..+.|+.+|+|...-|..||-|-|.|.+
T Consensus 419 ~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 419 QTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRSL 476 (558)
T ss_pred cCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhcc
Confidence 3478899999999999999999999999999999999999999999999999888763
No 55
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.57 E-value=0.0015 Score=67.23 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=111.8
Q ss_pred eeecceEE-EechhhHHHHhcChh---hHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEE
Q 004337 336 ASRETAVV-IMNHISLVEILMDVN---QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYV 411 (760)
Q Consensus 336 AsR~~g~V-~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fL 411 (760)
.=|..+++ ...+..+++.|+|.+ +|-..+ ...++|.-... -...++|..+..|-|+ -.||+.+.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-------~~~~~le~~~~----~~~~i~y~~~~~P~P~-s~RD~V~~ 113 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-------VELEVVDEDPE----TGSEIIYWEMQWPKPF-ANRDYVYV 113 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-------eeEEEEEccCC----CCCEEEEEEEECCCCC-CCccEEEE
Confidence 46665644 789999999999975 566665 24556664221 0227899999999996 89999999
Q ss_pred EeeeeeC-CceEEEEEEecCC-CCC--CCCcceeecCccceEEecC---CCceEEEEEEeeeecCc-ccchhhHhhhhch
Q 004337 412 RYCKQHG-EGTWAVVDVSLDN-LRP--SPAVRCRRRPSGCLIQEMP---NGYSKVTWVEHVEVDDR-GVHNLYKQLVSTG 483 (760)
Q Consensus 412 Ryckq~~-~g~w~VvDvS~d~-~~~--~~~~~~~rlPSGclIq~~~---nG~skVtwVeH~e~d~~-~vh~l~rpl~~Sg 483 (760)
|-..+.+ +|.++|+-.|++. ..| ..++|.....+|++|++.. ++.|+|+++-|. |+. .+|.- |++.-
T Consensus 114 r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~~---lvN~~ 188 (207)
T cd08911 114 RRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPSY---ITSWV 188 (207)
T ss_pred EEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCHH---HHHHH
Confidence 8876665 5678899888874 223 2689999999999999983 677999988885 665 46653 46666
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 004337 484 NAFGAKRWVATLDRQCER 501 (760)
Q Consensus 484 ~afgA~rWla~LqR~cer 501 (760)
...+.-.||..|++-|..
T Consensus 189 ~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 189 AMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHhhccHHHHHHHHHHhc
Confidence 778888999999887753
No 56
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.41 E-value=0.00016 Score=74.24 Aligned_cols=64 Identities=27% Similarity=0.637 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
..+.++.|+.++..|+..++..|...++|+...+.+|+..+|++++.+++||||+|++.|+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 150 NKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 3445788899999999999999999999999999999999999999999999999999998644
No 57
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.35 E-value=0.0066 Score=63.96 Aligned_cols=191 Identities=15% Similarity=0.252 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhhcC--CCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEE-echhhHHHHhcChh
Q 004337 282 LAVAAMEELIRMAQM--GEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVI-MNHISLVEILMDVN 358 (760)
Q Consensus 282 lA~~Am~El~~la~~--~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~-~~~~~LVe~lmD~~ 358 (760)
.-.+-.+|.+++|+. ++.-|--..+. ++ .++|-+.. ...|+....=|+.++|. ..+..+.+.|.|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~W~l~~~~-------~g-ikVy~r~~--~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~ 76 (235)
T cd08872 7 EVDEKVQEQLTYALEDVGADGWQLFAEE-------GE-MKVYRREV--EEDGVVLDPLKATHAVKGVTGHEVCHYFFDPD 76 (235)
T ss_pred HHHHHHHHHHHHHHccCCCCCCEEEEeC-------Cc-eEEEEEEC--CCCCceeeeEEEEEEECCCCHHHHHHHHhChh
Confidence 345667889999865 45578654321 00 22332211 11144445678888888 88999999999986
Q ss_pred ---hHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCC-------ceEEEEEEe
Q 004337 359 ---QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGE-------GTWAVVDVS 428 (760)
Q Consensus 359 ---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~-------g~w~VvDvS 428 (760)
+|-..| ...+||.....+ ..+.|..+-.|=| +-.|||.++|+.++.++ +.|+||..|
T Consensus 77 ~r~~Wd~~~-------~~~~vie~l~~~-----~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~S 143 (235)
T cd08872 77 VRMDWETTL-------ENFHVVETLSQD-----TLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFS 143 (235)
T ss_pred hHHHHHhhh-------heeEEEEecCCC-----CEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEec
Confidence 455554 344555544332 2567877888889 69999999999999876 789999999
Q ss_pred cCCCC--CC-CCcceee---cCccceEEe------c--CCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHH
Q 004337 429 LDNLR--PS-PAVRCRR---RPSGCLIQE------M--PNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVAT 494 (760)
Q Consensus 429 ~d~~~--~~-~~~~~~r---lPSGclIq~------~--~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~ 494 (760)
++.-. +. .++|++. +=.|.+|.+ + .||.|+||++-|++---+--.- +++.....++-.+|..
T Consensus 144 v~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~iP~w----vvn~~~k~~~P~~l~~ 219 (235)
T cd08872 144 VDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWAPAS----VLRAVYKREYPKFLKR 219 (235)
T ss_pred ccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCccHH----HHHHHHHhhchHHHHH
Confidence 86432 22 6787775 223333333 1 5889999999999755443333 3555556667777777
Q ss_pred HHHHH
Q 004337 495 LDRQC 499 (760)
Q Consensus 495 LqR~c 499 (760)
|--++
T Consensus 220 ~~~~~ 224 (235)
T cd08872 220 FTSYV 224 (235)
T ss_pred HHHHH
Confidence 75443
No 58
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.20 E-value=0.0036 Score=65.99 Aligned_cols=118 Identities=12% Similarity=0.089 Sum_probs=86.6
Q ss_pred CCcceeeecceEEEechhhHHHHhcChhh---HhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCce
Q 004337 331 GFKCEASRETAVVIMNHISLVEILMDVNQ---WSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRE 407 (760)
Q Consensus 331 g~~~EAsR~~g~V~~~~~~LVe~lmD~~~---W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re 407 (760)
.|++|+. |...+.+|++.|.|.+. |-..+ ...++|..-.. ...++|..+..|. -+..||
T Consensus 78 ~fk~e~~-----vd~s~~~v~dlL~D~~~R~~WD~~~-------~e~evI~~id~-----d~~iyy~~~p~Pw-Pvk~RD 139 (235)
T cd08873 78 SFCVELK-----VQTCASDAFDLLSDPFKRPEWDPHG-------RSCEEVKRVGE-----DDGIYHTTMPSLT-SEKPND 139 (235)
T ss_pred EEEEEEE-----ecCCHHHHHHHHhCcchhhhhhhcc-------cEEEEEEEeCC-----CcEEEEEEcCCCC-CCCCce
Confidence 4555554 88899999999999764 55544 45566663321 2246676655555 488999
Q ss_pred eEEEEeeeeeCCc--eEEEEEEecC-CCCC-C-CCcceeecCccceEEecCCCceEEEEEEeee
Q 004337 408 SYYVRYCKQHGEG--TWAVVDVSLD-NLRP-S-PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVE 466 (760)
Q Consensus 408 ~~fLRyckq~~~g--~w~VvDvS~d-~~~~-~-~~~~~~rlPSGclIq~~~nG~skVtwVeH~e 466 (760)
|.++|+.++..++ ..+|.=.|+. ...| . .++|++.+=.|++|++.++|.|+||.+-|++
T Consensus 140 fV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 140 FVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred EEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 9999999984433 3777767765 3333 2 7899999999999999999999999999986
No 59
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.84 E-value=0.036 Score=56.61 Aligned_cols=173 Identities=21% Similarity=0.260 Sum_probs=103.9
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeeccc
Q 004337 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIAN 625 (760)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~ 625 (760)
..++|.... ..++|+|.+|+..++ . .+..-+...-++.+|+.||+.|.| .|.+||-..- ..+.+-+|
T Consensus 17 ~~~~W~~~~--~~~gi~I~~k~~~~~--~---~l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~~--~~~vie~i-- 83 (197)
T cd08869 17 KSKGWVSVS--SSDHVELAFKKVDDG--H---PLRLWRASTEVEAPPEEVLQRILR--ERHLWDDDLL--QWKVVETL-- 83 (197)
T ss_pred ccCCceEEe--cCCcEEEEEEeCCCC--C---cEEEEEEEEEeCCCHHHHHHHHHH--HHhccchhhh--eEEEEEEe--
Confidence 467898653 356999999997431 1 234457888889999999999988 6899995331 13344444
Q ss_pred CCCCCceEEEEEeccCCCCC-CceEEEEecccC-CCCcEEEEe-ecchh-hhhhhhcCCCCCC--ccccCCCcEEccCCC
Q 004337 626 GRDTGNCVSLLRVNSANSSQ-SNMLILQESCTD-PTASFVIYA-PVDIV-AMNVVLNGGDPDY--VALLPSGFAILPDGT 699 (760)
Q Consensus 626 g~~~gn~vsllr~~~~~~~~-~~~liLQes~~D-~sgs~vVyA-PvD~~-~m~~vm~G~d~~~--v~lLPSGF~I~Pdg~ 699 (760)
+..+.|--...+...+-. .++.+++-...| ..|+++|.. -|+-+ .+ -+.+ +..+++||.|-|.+.
T Consensus 84 --d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-------p~g~VR~~~~~~g~~i~p~~~ 154 (197)
T cd08869 84 --DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-------PLGGVRAVVLASRYLIEPCGS 154 (197)
T ss_pred --cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-------CCCCEEEEEEeeeEEEEECCC
Confidence 333444333333322233 345555433333 456665433 33321 10 0122 357889999998542
Q ss_pred CCCCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHHHHHhhcc
Q 004337 700 SLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVERIKASLSC 757 (760)
Q Consensus 700 ~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~al~~ 757 (760)
++|.+|--.|+=... .|. .+ +-..+++++..|++||+.++|
T Consensus 155 ------------~~t~vty~~~~Dp~G~iP~---wl--~N~~~~~~~~~~~~l~~~~~~ 196 (197)
T cd08869 155 ------------GKSRVTHICRVDLRGRSPE---WY--NKVYGHLCARELLRIRDSFRQ 196 (197)
T ss_pred ------------CCeEEEEEEEECCCCCCCc---ee--ecchHhHHHHHHHHHHhhccC
Confidence 468888776665443 332 12 445568999999999999876
No 60
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.64 E-value=0.016 Score=61.25 Aligned_cols=123 Identities=14% Similarity=0.112 Sum_probs=89.3
Q ss_pred eeecceEEEechhhHHHHhcChh---hHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCC-CCccCceeEEE
Q 004337 336 ASRETAVVIMNHISLVEILMDVN---QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPS-PLVPTRESYYV 411 (760)
Q Consensus 336 AsR~~g~V~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~S-PLvp~Re~~fL 411 (760)
+-|.-..|...+..|.+.|.|.+ +|..-| ...+||..-...+ . +|...-.|- |+ ..|||-++
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~-------~e~~vI~qld~~~-----~-vY~~~~pPw~Pv-k~RD~V~~ 144 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHF-------LSCEVIDWVSEDD-----Q-IYHITCPIVNND-KPKDLVVL 144 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHhh-------ceEEEEEEeCCCc-----C-EEEEecCCCCCC-CCceEEEE
Confidence 33444578899999999999976 455555 3455555433222 1 455444443 44 89999998
Q ss_pred EeeeeeC-Cce-EEEEEEecCC-CCCC--CCcceeecCccceEEecCCCceEEEEEEeeeecCcccch
Q 004337 412 RYCKQHG-EGT-WAVVDVSLDN-LRPS--PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHN 474 (760)
Q Consensus 412 Ryckq~~-~g~-w~VvDvS~d~-~~~~--~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 474 (760)
|=..+.. +|. ++|.=.|+.. ..|. .++|++.+=+|++|++.++|.|+||.+-|++ +..+|.
T Consensus 145 ~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~ 210 (236)
T cd08914 145 VSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPY 210 (236)
T ss_pred EEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--Cccchh
Confidence 7776666 885 9888888876 4443 7899999999999999999999999999995 455544
No 61
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.64 E-value=0.054 Score=56.07 Aligned_cols=175 Identities=17% Similarity=0.293 Sum_probs=102.5
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecc-CChhhHhhhhcccCccchhhhccCCCcceeEeecc
Q 004337 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLP-VPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIA 624 (760)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia 624 (760)
..++|..... .++|+|.+++..+ +.+...++...++ +||+.+|++|.|...|.+||-.... .+.+.++
T Consensus 21 ~~~~W~~~~~--~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e--~~~ie~~- 89 (222)
T cd08871 21 STDGWKLKYN--KNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE--SFDICQL- 89 (222)
T ss_pred CCCCcEEEEc--CCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce--eEEEEEc-
Confidence 3468997643 4679999988632 3444555666665 9999999999999999999964321 2344444
Q ss_pred cCCCCCceEEEEEeccCC-CCCCceEEEEecccCCCCcEEEE-eecchhhhhhhhcCCCCCC--ccccCCCcEEccCCCC
Q 004337 625 NGRDTGNCVSLLRVNSAN-SSQSNMLILQESCTDPTASFVIY-APVDIVAMNVVLNGGDPDY--VALLPSGFAILPDGTS 700 (760)
Q Consensus 625 ~g~~~gn~vsllr~~~~~-~~~~~~liLQes~~D~sgs~vVy-APvD~~~m~~vm~G~d~~~--v~lLPSGF~I~Pdg~~ 700 (760)
+.++.|.-...+..- -...+.++++....+. |+++|+ ..++-+.+ ...+.+ +..+.+||.|-|.+
T Consensus 90 ---d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~-----P~~~g~VR~~~~~~g~~i~p~~-- 158 (222)
T cd08871 90 ---NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKY-----PPRKGFVRAISLLTGYLIRPTG-- 158 (222)
T ss_pred ---CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCC-----CCCCCeEEeEEEccEEEEEECC--
Confidence 345555545444222 2334566666555444 776654 34433211 011222 23567888888843
Q ss_pred CCCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHHHHHhhc
Q 004337 701 LHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVERIKASLS 756 (760)
Q Consensus 701 ~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~al~ 756 (760)
.++|.+|.-+|+=... .|..=.+. .+....-.++++++.++.
T Consensus 159 ----------~~~t~vt~~~~~Dp~G~IP~~lvN~----~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 159 ----------PKGCTLTYVTQNDPKGSLPKWVVNK----ATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred ----------CCCEEEEEEEecCCCCCcCHHHHHH----HHHHHhHHHHHHHHHHHH
Confidence 1468888887776553 33321111 112334477888888764
No 62
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.57 E-value=0.026 Score=59.79 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=82.8
Q ss_pred cceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCC--CccCceeEEEEeeee
Q 004337 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSP--LVPTRESYYVRYCKQ 416 (760)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--Lvp~Re~~fLRyckq 416 (760)
.-++|...+..|.+.|.|.+...+=.+.+ ...++|...... . .+|...- +.+ -+..|||-.++...+
T Consensus 85 ~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~----~e~~vIe~id~~----~--~vY~v~~-~p~~~pvs~RDfV~~~s~~~ 153 (240)
T cd08913 85 VEMVVHVDAAQAFLLLSDLRRRPEWDKHY----RSCELVQQVDED----D--AIYHVTS-PSLSGHGKPQDFVILASRRK 153 (240)
T ss_pred EEEEEcCCHHHHHHHHhChhhhhhhHhhc----cEEEEEEecCCC----c--EEEEEec-CCCCCCCCCCeEEEEEEEEe
Confidence 33688999999999999986544333322 345566544331 1 1232221 222 588999999998866
Q ss_pred eCC-c-eEEEEEEec--CCCCCC-CCcceeecCccceEEecCCCceEEEEEEeeeecCcccchh
Q 004337 417 HGE-G-TWAVVDVSL--DNLRPS-PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNL 475 (760)
Q Consensus 417 ~~~-g-~w~VvDvS~--d~~~~~-~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l 475 (760)
.++ | .++|+=.|+ ...-+. .++|.+.+..|++|++.++|.|+||++-|++ +..+|..
T Consensus 154 ~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~ 215 (240)
T cd08913 154 PCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYI 215 (240)
T ss_pred ccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHH
Confidence 544 4 355544443 443222 7899999999999999999999999999998 3355544
No 63
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.30 E-value=0.0023 Score=79.31 Aligned_cols=61 Identities=20% Similarity=0.393 Sum_probs=57.6
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
+++.|++++..|+..+..+|....+|...+.+.|...+++.++.|++||||-|.|.|+..+
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 4778899999999999999999999999999999999999999999999999999998654
No 64
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=96.02 E-value=0.17 Score=52.33 Aligned_cols=174 Identities=24% Similarity=0.314 Sum_probs=104.1
Q ss_pred CCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecc-CChhhHhhhhcccCccchhhh-ccCCCcceeEee
Q 004337 545 STAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLP-VPPKRVFDFLRDENTRSEWDI-LSNGGVVQEMAH 622 (760)
Q Consensus 545 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdi-ls~G~~vqe~~~ 622 (760)
....+|.... ..++|.|.++|..+ |.|.-++.| |+=+| +|.+.|+|.|+| |..||. |... ..|..
T Consensus 24 ek~kgW~~~~--~~~~vev~~kk~~d--~~~l~lwk~---s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~---~~Ie~ 90 (205)
T cd08907 24 ERFKGWHSAP--GPDNTELACKKVGD--GHPLRLWKV---STEVEAPPSVVLQRVLRE---RHLWDEDLLHS---QVIEA 90 (205)
T ss_pred hccCCceeec--CCCCcEEEEEeCCC--CCceEEEEE---EEEecCCCHHHHHHHhhc---hhhhhHHHHhh---hhhee
Confidence 4556898763 36789999999754 556555554 44457 999999999999 999993 3322 23333
Q ss_pred cccCCCCCceEEEEEeccCCCCCCceEEEEecc-cC-CCCcEEEEee-cchhhhhhhhcCCCCCCccccCCCcEEccCCC
Q 004337 623 IANGRDTGNCVSLLRVNSANSSQSNMLILQESC-TD-PTASFVIYAP-VDIVAMNVVLNGGDPDYVALLPSGFAILPDGT 699 (760)
Q Consensus 623 ia~g~~~gn~vsllr~~~~~~~~~~~liLQes~-~D-~sgs~vVyAP-vD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~ 699 (760)
| +..|.|-=.-.+...+-.+--|++|-++ +| +.|++++.+- |+=+.-. +.|| --...|=|||-|=|.|
T Consensus 91 L----d~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~p--p~~g--VRa~~l~sgYlIep~g- 161 (205)
T cd08907 91 L----ENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQ--LEAG--VRAVLLTSQYLIEPCG- 161 (205)
T ss_pred e----cCCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCC--CCCC--eEEEEEeccEEEEECC-
Confidence 3 4455555555544545556667888876 44 5687766652 2221111 1122 1223455777777744
Q ss_pred CCCCCCCCCCCCCCceeEEeeehhccCCcccccccchhhhh-hhhhhHHHHHHHHhhc
Q 004337 700 SLHGANIGEAASGGSLLTVAFQILVDSVPTAKLSLGSVATV-NNLIACTVERIKASLS 756 (760)
Q Consensus 700 ~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~~~~~sv~tv-~~li~~tv~~Ik~al~ 756 (760)
.|+|.||=-.|+=... ++. .=+..| ..|++.-+.||++.+.
T Consensus 162 -----------~g~s~ltyi~rvD~rG----~~P-~Wynk~~g~~~a~~l~~ir~sF~ 203 (205)
T cd08907 162 -----------MGRSRLTHICRADLRG----RSP-DWYNKVFGHLCAMEVARIRDSFP 203 (205)
T ss_pred -----------CCCeEEEEEEEeCCCC----CCc-HHHHHhHHHHHHHHHHHHHhhcc
Confidence 2578888666654432 111 112333 5677788999998764
No 65
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=95.43 E-value=0.18 Score=52.26 Aligned_cols=149 Identities=15% Similarity=0.201 Sum_probs=93.6
Q ss_pred CCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeecccC
Q 004337 547 AHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANG 626 (760)
Q Consensus 547 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g 626 (760)
.++|... ..++++.|.++++.+..| =-.++.--+|.+|+.||+||.|..+|.+||-.+.. .+.+-+|
T Consensus 21 ~~gWk~~--k~~~~~~v~~k~~~~~~g------kl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~--~~iie~I--- 87 (204)
T cd08904 21 TSGWKVV--KTSKKITVSWKPSRKYHG------NLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQV--YKMLQRI--- 87 (204)
T ss_pred ccCCeEE--ecCCceEEEEEEcCCCCc------eEEEEEEEecCCHHHHHHHHhccchhhhhcccccc--eeeEEEe---
Confidence 4899877 344889999998865444 22455666799999999999999999999963322 3444444
Q ss_pred CCCCceEEEEEeccC--C-CCCCceEEEEecc-cCCCCcEEE-EeecchhhhhhhhcCCCCCCc--cccCCCcEEccCCC
Q 004337 627 RDTGNCVSLLRVNSA--N-SSQSNMLILQESC-TDPTASFVI-YAPVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDGT 699 (760)
Q Consensus 627 ~~~gn~vsllr~~~~--~-~~~~~~liLQes~-~D~sgs~vV-yAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~ 699 (760)
+...+|...+..+. + -+..+.+.+|-.. .+. +.+++ +.-|+-+.+- -.+.+| -..|+||.|.|...
T Consensus 88 -d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~-~~~ii~~~sv~Hp~~P-----p~~g~VRa~n~~~G~~i~pl~~ 160 (204)
T cd08904 88 -DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEG-NMNIVSSVSVEYPQCP-----PSSNYIRGYNHPCGYVCSPLPE 160 (204)
T ss_pred -CCCcEEEEEecccccCCcccCceEEEEEEEEEeCC-CEEEEEEEecccCCCC-----CCCCcEEEeeeccEEEEEECCC
Confidence 66667777664421 1 2224566666532 233 33443 4445444221 123444 37899999999332
Q ss_pred CCCCCCCCCCCCCCceeEEeeehhcc
Q 004337 700 SLHGANIGEAASGGSLLTVAFQILVD 725 (760)
Q Consensus 700 ~~~~~~~~~~~~~gsllTvaFQil~~ 725 (760)
. .++|.||.-+|+=..
T Consensus 161 ~----------p~~t~l~~~~~~Dlk 176 (204)
T cd08904 161 N----------PAYSKLVMFVQPELR 176 (204)
T ss_pred C----------CCceEEEEEEEeCCC
Confidence 2 246999999995444
No 66
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.27 E-value=0.17 Score=52.44 Aligned_cols=149 Identities=16% Similarity=0.171 Sum_probs=80.7
Q ss_pred CCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeecc
Q 004337 545 STAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIA 624 (760)
Q Consensus 545 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia 624 (760)
-...+| .+. ...++|+|-++.. +|...|. ++ .+ -+++||+.|+++|.|...|.+||..... ++.+-.+
T Consensus 19 ~~~~gW-~l~-~~~~gI~Vy~k~~---~~~~~~~-~g-e~--~v~as~~~v~~ll~D~~~r~~Wd~~~~~--~~vl~~~- 86 (205)
T cd08874 19 QATAGW-SYQ-CLEKDVVIYYKVF---NGTYHGF-LG-AG--VIKAPLATVWKAVKDPRTRFLYDTMIKT--ARIHKTF- 86 (205)
T ss_pred hccCCc-EEE-ecCCCEEEEEecC---CCCcceE-EE-EE--EEcCCHHHHHHHHhCcchhhhhHHhhhh--eeeeeec-
Confidence 456789 443 3457899999864 2334444 43 33 3499999999999999999999964321 1222222
Q ss_pred cCCCCCceEEEEEeccCCC-----CCCceEEEEecccCCCCcEEE-EeecchhhhhhhhcCCCC-C--CccccCCCcEEc
Q 004337 625 NGRDTGNCVSLLRVNSANS-----SQSNMLILQESCTDPTASFVI-YAPVDIVAMNVVLNGGDP-D--YVALLPSGFAIL 695 (760)
Q Consensus 625 ~g~~~gn~vsllr~~~~~~-----~~~~~liLQes~~D~sgs~vV-yAPvD~~~m~~vm~G~d~-~--~v~lLPSGF~I~ 695 (760)
+... .|++.....+ ...++.+|+ ++.+.-+..+| ---|+-+.+- ..+ . -+..+++|+.|.
T Consensus 87 ---~~d~--~i~y~~~~~Pwp~~~~~RDfV~l~-~~~~~~~~~vi~~~SV~~~~~P-----~~~~~~VR~~~~~~gw~i~ 155 (205)
T cd08874 87 ---TEDI--CLVYLVHETPLCLLKQPRDFCCLQ-VEAKEGELSVVACQSVYDKSMP-----EPGRSLVRGEILPSAWILE 155 (205)
T ss_pred ---CCCe--EEEEEEecCCCCCCCCCCeEEEEE-EEEECCCcEEEEEEecccccCC-----CCCCCeEEeeeEeeeEEEE
Confidence 3332 3444321111 334666666 54444443333 2112211000 001 1 234688888888
Q ss_pred cCCCCCCCCCCCCCCCCCceeEEeeehhcc
Q 004337 696 PDGTSLHGANIGEAASGGSLLTVAFQILVD 725 (760)
Q Consensus 696 Pdg~~~~~~~~~~~~~~gsllTvaFQil~~ 725 (760)
|.-.. +.+.|.||--+|+=-.
T Consensus 156 P~~~~---------g~~~t~vty~~q~DPg 176 (205)
T cd08874 156 PVTVE---------GNQYTRVIYIAQVALC 176 (205)
T ss_pred ECccC---------CCCcEEEEEEEEECCC
Confidence 83110 1245777777776544
No 67
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=95.09 E-value=0.019 Score=63.40 Aligned_cols=62 Identities=24% Similarity=0.391 Sum_probs=52.2
Q ss_pred CCCCCCCCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
++|++..+....+.+|+....+ .+||+..++..||+++||+..||..||-|.|-|..+-...
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~~ 303 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMIE 303 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchHH
Confidence 4566678999999999986433 5799999999999999999999999999999887765443
No 68
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=95.06 E-value=1.2 Score=45.71 Aligned_cols=176 Identities=14% Similarity=0.154 Sum_probs=94.7
Q ss_pred CCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhh-cccCccchhhhccCCCcceeEeeccc
Q 004337 547 AHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFL-RDENTRSEWDILSNGGVVQEMAHIAN 625 (760)
Q Consensus 547 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FL-rd~~~R~eWdils~G~~vqe~~~ia~ 625 (760)
..+|.... +..++|.|.+|... | .|-+ .++...+++||..||++| .|...|.+||-.+.. .+.+-++
T Consensus 23 ~~~W~l~~-~~~~~i~i~~r~~~---~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~--~~~i~~~-- 90 (208)
T cd08868 23 DPGWKLEK-NTTWGDVVYSRNVP---G--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE--CKIIQVI-- 90 (208)
T ss_pred CCCceEEE-ecCCCCEEEEEEcC---C--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc--eEEEEEe--
Confidence 34898663 33348999999863 3 2333 445556799999999865 588999999965432 3444444
Q ss_pred CCCCCceEEEEEeccC--CC-CCCceEEEEecccCCCCcEEE-EeecchhhhhhhhcCCCCCC--ccccCCCcEEccCCC
Q 004337 626 GRDTGNCVSLLRVNSA--NS-SQSNMLILQESCTDPTASFVI-YAPVDIVAMNVVLNGGDPDY--VALLPSGFAILPDGT 699 (760)
Q Consensus 626 g~~~gn~vsllr~~~~--~~-~~~~~liLQes~~D~sgs~vV-yAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I~Pdg~ 699 (760)
+....|--...... .+ ...+.+.++-..-+. +.++| ...|+-+.+ ...+.+ +..+++||.|-|.+.
T Consensus 91 --d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~-----P~~~g~VR~~~~~~~~~i~p~~~ 162 (208)
T cd08868 91 --DDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAM-----PPTKNYVRGENGPGCWILRPLPN 162 (208)
T ss_pred --cCCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCCCC-----CCCCCeEEEeccccEEEEEECCC
Confidence 23334433222211 11 234555555443333 55544 444443321 112232 457889999998543
Q ss_pred CCCCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHHHHHhhc
Q 004337 700 SLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVERIKASLS 756 (760)
Q Consensus 700 ~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~al~ 756 (760)
+ .++|.+|.-+++=... .|.--.+. + +-..+-.|+..+|.++.
T Consensus 163 ~----------~~~t~v~~~~~~Dp~G~iP~~lvN~--~--~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 163 N----------PNKCNFTWLLNTDLKGWLPQYLVDQ--A--LASVLLDFMKHLRKRIA 206 (208)
T ss_pred C----------CCceEEEEEEEECCCCCCcceeeeh--h--hHHHHHHHHHHHHHHHh
Confidence 1 1468888555544332 23221111 1 12233467778877764
No 69
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=94.62 E-value=0.018 Score=47.67 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccch
Q 004337 101 QIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 142 (760)
Q Consensus 101 Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRR 142 (760)
-++.|++.|...+++.......|..+.+|+..||+.||-.|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 357799999999999999999999999999999999996554
No 70
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.61 E-value=1.5 Score=45.09 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=78.7
Q ss_pred HHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccC
Q 004337 534 MVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSN 613 (760)
Q Consensus 534 M~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~ 613 (760)
++..|...+.. .++|.... ..++|+|.+|...+ +.+++.+.-..++.|+..++++|+|-..+.+|+-.+.
T Consensus 10 ~~~~~~~~l~~--~~~W~~~~--~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~ 79 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQK--ESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCI 79 (215)
T ss_pred HHHHHHhcccC--CCCcEEec--cCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccce
Confidence 34456665655 67899774 34799999998743 4489999999999999999999999999999995431
Q ss_pred CCcceeEeecccCCCCCceEEEEEeccCC-CCCCceEEEEec--ccCCCCcEEEEe
Q 004337 614 GGVVQEMAHIANGRDTGNCVSLLRVNSAN-SSQSNMLILQES--CTDPTASFVIYA 666 (760)
Q Consensus 614 G~~vqe~~~ia~g~~~gn~vsllr~~~~~-~~~~~~liLQes--~~D~sgs~vVyA 666 (760)
....+..+ +..+.|..+++...= -+..++++.... ..|..|+.+|+.
T Consensus 80 --~~~~l~~~----~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~ 129 (215)
T cd08877 80 --RSKKVKQL----GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILL 129 (215)
T ss_pred --eeEEEeec----CCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEE
Confidence 12333333 345677777766321 122345444333 344678777655
No 71
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.46 E-value=1.3 Score=43.46 Aligned_cols=148 Identities=19% Similarity=0.292 Sum_probs=91.2
Q ss_pred CCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeecccCC
Q 004337 548 HTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANGR 627 (760)
Q Consensus 548 ~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g~ 627 (760)
++|..+... ++|+|..++..+. .+...++..-++.|+..|+++|.|...|.+||-.... ...+..+..
T Consensus 15 ~~W~~~~~~--~~v~vy~~~~~~~------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~--~~vl~~~~~-- 82 (193)
T cd00177 15 EGWKLVKEK--DGVKIYTKPYEDS------GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEE--FEVIEEIDE-- 82 (193)
T ss_pred CCeEEEEEC--CcEEEEEecCCCC------CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceE--EEEEEEeCC--
Confidence 589887433 4899988876431 2345566677799999999999999999999943222 233333322
Q ss_pred CCCceEEEEEeccCC-CCCCceEEEEecccCCCC-cEEEEeecchhhhhhhhcCCCCCCc--cccCCCcEEccCCCCCCC
Q 004337 628 DTGNCVSLLRVNSAN-SSQSNMLILQESCTDPTA-SFVIYAPVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDGTSLHG 703 (760)
Q Consensus 628 ~~gn~vsllr~~~~~-~~~~~~liLQes~~D~sg-s~vVyAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~~~~~ 703 (760)
+..|........- ....+++++.....+..| -+++..+||.+.. ...+..| .++++||.|-|.+
T Consensus 83 --~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~-----p~~~~~vR~~~~~~~~~i~~~~----- 150 (193)
T cd00177 83 --HTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSH-----PKEKGYVRAEIKLSGWIIEPLD----- 150 (193)
T ss_pred --CeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCC-----CCCCCcEEEEEEccEEEEEECC-----
Confidence 2344444443322 233467777776666544 5667777776411 1112333 3668899988851
Q ss_pred CCCCCCCCCCceeEEeeehhccC
Q 004337 704 ANIGEAASGGSLLTVAFQILVDS 726 (760)
Q Consensus 704 ~~~~~~~~~gsllTvaFQil~~~ 726 (760)
.++|.+|.-+|+=...
T Consensus 151 -------~~~~~vt~~~~~D~~g 166 (193)
T cd00177 151 -------PGKTKVTYVLQVDPKG 166 (193)
T ss_pred -------CCCEEEEEEEeeCCCC
Confidence 1468888877775543
No 72
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.20 E-value=1 Score=45.51 Aligned_cols=150 Identities=19% Similarity=0.180 Sum_probs=87.9
Q ss_pred CCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhh-HhhhhcccCccchhhhccCCCcceeEeeccc
Q 004337 547 AHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKR-VFDFLRDENTRSEWDILSNGGVVQEMAHIAN 625 (760)
Q Consensus 547 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~-vf~FLrd~~~R~eWdils~G~~vqe~~~ia~ 625 (760)
.++|..... +.+++.+..+...+ ...+-..++...++.+++. +.++|.|...|.+||-..-. ++.+-.+.
T Consensus 18 ~~~W~~~~~-~~~~~~~~~~~~~~-----~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~--~~~ie~~~- 88 (206)
T smart00234 18 EPGWVLSSE-NENGDEVRSILSPG-----RSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK--AETLEVID- 88 (206)
T ss_pred CCccEEccc-cCCcceEEEEccCC-----CCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc--EEEEEEEC-
Confidence 467987753 23444444444321 0136778888999988886 66899999999999954422 34444443
Q ss_pred CCCCCceEEEEEeccC--CCCCCceEEEEecccCCCCcEEEEe-ecchhhhhhhhcCCCCCCc--cccCCCcEEccCCCC
Q 004337 626 GRDTGNCVSLLRVNSA--NSSQSNMLILQESCTDPTASFVIYA-PVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDGTS 700 (760)
Q Consensus 626 g~~~gn~vsllr~~~~--~~~~~~~liLQes~~D~sgs~vVyA-PvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~~ 700 (760)
.++.|-....+.. --...+..++.-...|..|+++|.+ .++-+.. ...+.+| .++++||.|-|.+.
T Consensus 89 ---~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-----p~~~~~VR~~~~~~~~~i~p~~~- 159 (206)
T smart00234 89 ---NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-----PPTSGYVRAENLPSGLLIEPLGN- 159 (206)
T ss_pred ---CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-----CCCCCceEEEEeceEEEEEECCC-
Confidence 2344444333221 1223466777666666777766654 5555421 0123333 58999999999432
Q ss_pred CCCCCCCCCCCCCceeEEeeehhcc
Q 004337 701 LHGANIGEAASGGSLLTVAFQILVD 725 (760)
Q Consensus 701 ~~~~~~~~~~~~gsllTvaFQil~~ 725 (760)
+.|.+|.-.|+=..
T Consensus 160 -----------~~t~vt~~~~~D~~ 173 (206)
T smart00234 160 -----------GPSKVTWVSHADLK 173 (206)
T ss_pred -----------CCeEEEEEEEEecC
Confidence 23667766665443
No 73
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=94.16 E-value=1.3 Score=45.67 Aligned_cols=177 Identities=17% Similarity=0.161 Sum_probs=94.9
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhccc--CccchhhhccCCCcceeEeec
Q 004337 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDE--NTRSEWDILSNGGVVQEMAHI 623 (760)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~--~~R~eWdils~G~~vqe~~~i 623 (760)
..++|.... ..++|+|.+|++...+|.. .++-.-+|++++.||+||.|. ..|.+||..+.. ++.+-+|
T Consensus 20 ~~~~W~~~~--~~~~i~v~~~~~~~~~~~~------~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~--~~vle~i 89 (208)
T cd08903 20 DESGWKTCR--RTNEVAVSWRPSAEFAGNL------YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD--FEVVEAI 89 (208)
T ss_pred cccCCEEEE--cCCCEEEEeeecCCCCCcE------EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc--EEEEEEe
Confidence 567898775 3469999999876545422 445555699999999999854 478999964432 3444444
Q ss_pred ccCCCCCceEEEEEeccC--C-CCCCceEEEEecccCCCCcEEEEe-ecchhhhhhhhcCCCCCCcc--ccCCCcEEccC
Q 004337 624 ANGRDTGNCVSLLRVNSA--N-SSQSNMLILQESCTDPTASFVIYA-PVDIVAMNVVLNGGDPDYVA--LLPSGFAILPD 697 (760)
Q Consensus 624 a~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~~D~sgs~vVyA-PvD~~~m~~vm~G~d~~~v~--lLPSGF~I~Pd 697 (760)
+....|..++.... + -+..++++++-.-.+..|.+++.. .++-+.+ ...+.+|- .-|+|+.|.|-
T Consensus 90 ----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~-----P~~~~~VR~~~~~~g~~~~~~ 160 (208)
T cd08903 90 ----SDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLC-----PPQAGFVRGFNHPCGCFCEPV 160 (208)
T ss_pred ----cCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCC-----CCCCCeEEEeeeccEEEEEEC
Confidence 23334333222111 1 233456666655455567666554 2222110 01233332 45577777661
Q ss_pred CCCCCCCCCCCCCCCCceeEEeeehhccC-Ccccccccchhhh-hhhhhhHHHHHHHHhhc
Q 004337 698 GTSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVAT-VNNLIACTVERIKASLS 756 (760)
Q Consensus 698 g~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~t-v~~li~~tv~~Ik~al~ 756 (760)
.. +.++|.+|.-+|+=... .|.. -|.+ +...+-.|.+.+|.+|.
T Consensus 161 ~~----------~~~~t~v~~~~~~DpkG~iP~~-----lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 161 PG----------EPDKTQLVSFFQTDLSGYLPQT-----VVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CC----------CCCceEEEEEEEeccCCCcCHH-----HHHHHhhHHHHHHHHHHHHHHh
Confidence 10 11457777666554332 2321 1111 11333466677777664
No 74
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=93.85 E-value=0.53 Score=49.39 Aligned_cols=61 Identities=30% Similarity=0.315 Sum_probs=39.0
Q ss_pred cccchhhHHHHHHH--HHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 004337 138 FQNKRTQMKTQHER--HENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDR 212 (760)
Q Consensus 138 FQNRRaK~Kr~~~r--~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r 212 (760)
-|+-|-|.|-+..+ .+...|..||++|+.||+.|++.. ..+-.+.+.|+.+...|++||..
T Consensus 81 AQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n--------------~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 81 AQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAIN--------------ESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhhHHHHHHHHHHHHHHHh
Confidence 35656665555444 445568888999999999988865 23334556666666666666543
No 75
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=93.30 E-value=2 Score=43.07 Aligned_cols=149 Identities=12% Similarity=0.150 Sum_probs=83.3
Q ss_pred CCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeecc
Q 004337 545 STAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIA 624 (760)
Q Consensus 545 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia 624 (760)
|++.+|..... .++|+|.+++..+ +.+..-.++..++.||+.+|+++.|..+|.+||--.-. .+.+..+
T Consensus 14 ~~~~~W~~~~~--~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~--~~vie~~- 82 (195)
T cd08876 14 APDGDWQLVKD--KDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKE--SRVLKRT- 82 (195)
T ss_pred CCCCCCEEEec--CCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcce--EEEeecC-
Confidence 44555987753 4799999988632 22455677778999999999999999999999943211 1222222
Q ss_pred cCCCCCceEEEEEeccCCC-CCCceEEEEecccCC-CCcEEEEee-cchhhhhhhhcCCCCC--CccccCCCcEEccCCC
Q 004337 625 NGRDTGNCVSLLRVNSANS-SQSNMLILQESCTDP-TASFVIYAP-VDIVAMNVVLNGGDPD--YVALLPSGFAILPDGT 699 (760)
Q Consensus 625 ~g~~~gn~vsllr~~~~~~-~~~~~liLQes~~D~-sgs~vVyAP-vD~~~m~~vm~G~d~~--~v~lLPSGF~I~Pdg~ 699 (760)
+.++.+..++....-+ ...+..+...-..+. .|.+++..- ++.. -...+. ..-.+.+||.|-|.+.
T Consensus 83 ---~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~------~P~~~~~vR~~~~~~~~~i~~~~~ 153 (195)
T cd08876 83 ---DDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA------LPEQKGYVRIKTVEGQWTFTPLGN 153 (195)
T ss_pred ---CCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc------CCCCCCeEEceeceeeEEEEECCC
Confidence 2224555555543221 122333333333332 344433321 2110 000111 1345667888887431
Q ss_pred CCCCCCCCCCCCCCceeEEeeehhcc
Q 004337 700 SLHGANIGEAASGGSLLTVAFQILVD 725 (760)
Q Consensus 700 ~~~~~~~~~~~~~gsllTvaFQil~~ 725 (760)
++|.+|.-.|+-..
T Consensus 154 ------------~~t~vt~~~~~dp~ 167 (195)
T cd08876 154 ------------GKTRVTYQAYADPG 167 (195)
T ss_pred ------------CeEEEEEEEEeCCC
Confidence 46888877766554
No 76
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=93.21 E-value=2.8 Score=43.63 Aligned_cols=173 Identities=23% Similarity=0.295 Sum_probs=95.3
Q ss_pred CCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhh-ccCCCcceeEeecccC
Q 004337 548 HTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDI-LSNGGVVQEMAHIANG 626 (760)
Q Consensus 548 ~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi-ls~G~~vqe~~~ia~g 626 (760)
.+|..+. ..+++.+..+|..+ |.|. =--++++=+|.||..|+..+-+ .|.+||. +..+ ..+-+|
T Consensus 27 k~w~~~~--~~~~~e~~ykK~~d--~~~l---k~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~---~~ie~l--- 91 (205)
T cd08909 27 KGWISCS--SSDNTELAYKKVGD--GNPL---RLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQW---KVVETL--- 91 (205)
T ss_pred cCCcccC--CcCCeEEEEecCCC--CCce---EEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhccee---EEEEEe---
Confidence 4677663 35778888888643 4343 2344677789777777555544 6999994 2222 222222
Q ss_pred CCCCceEEEEEeccCCCCCC-ceEEEEecccC-CCCcEE-EEeecchhhhhhhhcCCCCCCccccCCCcEEccCCCCCCC
Q 004337 627 RDTGNCVSLLRVNSANSSQS-NMLILQESCTD-PTASFV-IYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTSLHG 703 (760)
Q Consensus 627 ~~~gn~vsllr~~~~~~~~~-~~liLQes~~D-~sgs~v-VyAPvD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~~~~~ 703 (760)
+..+.|=-.+++...+-.+ +..+++--.+| ..|+++ ++..|+-+.-.. .|+. -+.++=+||.|-|-|.
T Consensus 92 -d~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~V--Ra~~~~~gylI~P~~~---- 162 (205)
T cd08909 92 -DKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGV--RAVVLDSQYLIEPCGS---- 162 (205)
T ss_pred -CCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcE--EEEEEcCcEEEEECCC----
Confidence 2224444444444333333 44444443345 578754 344454432111 1222 3456678888888332
Q ss_pred CCCCCCCCCCceeEEeeehhccCCcccccccchhhhhhhhhhHHHHHHHHhhc
Q 004337 704 ANIGEAASGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLS 756 (760)
Q Consensus 704 ~~~~~~~~~gsllTvaFQil~~~~~~a~~~~~sv~tv~~li~~tv~~Ik~al~ 756 (760)
|+|.||---|+=. .-.+.-=-+-.++.|++.-+.||++.++
T Consensus 163 --------g~trvt~i~~vDp----kG~~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 163 --------GKSRLTHICRVDL----KGHSPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred --------CCEEEEEEEEecC----CCCChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 4577765444432 2222222245567888899999998765
No 77
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=92.87 E-value=1.2 Score=42.94 Aligned_cols=85 Identities=25% Similarity=0.352 Sum_probs=50.1
Q ss_pred CCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCchhhhcccccchhhHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 004337 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSREL-GLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYRE 173 (760)
Q Consensus 95 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L-gL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~e 173 (760)
.+|+.+++-.|- - .+|=+.| |++...|-.|=|.||+-.-|--.......--++.+.|..++..|..
T Consensus 22 d~lsDd~LvsmS------------V-ReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSMS------------V-RELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHhh------------H-HHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888877661 1 2333444 8999999999999997544332222222222233445555555544
Q ss_pred HhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHH
Q 004337 174 ALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRI 213 (760)
Q Consensus 174 a~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~ 213 (760)
|.++|+.||++++.|++-.
T Consensus 89 ---------------------qv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 89 ---------------------QVEKLKEENSRLRRELDAY 107 (135)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776643
No 78
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=92.55 E-value=1.2 Score=47.36 Aligned_cols=66 Identities=26% Similarity=0.433 Sum_probs=48.7
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeec
Q 004337 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHI 623 (760)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~i 623 (760)
..++|..- ...++|+|-++.+ ..+++-..=+-+++|++.||++|.|...|.+||. +...++.+..|
T Consensus 53 ~~~~W~l~--~~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVA--SSTTSVTLYTLEQ--------DGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred ccCCCEEE--EcCCCEEEEEecC--------CCceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 46789755 3457899999873 2345555555589999999999999999999996 33345666665
No 79
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=92.48 E-value=3.2 Score=43.18 Aligned_cols=172 Identities=23% Similarity=0.296 Sum_probs=97.4
Q ss_pred CcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeecccCCC
Q 004337 549 TWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANGRD 628 (760)
Q Consensus 549 ~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g~~ 628 (760)
+|..++ ..+.+.+..+|.. +|.| +.--+.++-+|.+|..|...|-|+ |.+||...- .++.+..| +
T Consensus 28 ~w~~~~--~~~~~el~~~k~~--~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~--e~~vIe~l----d 92 (204)
T cd08908 28 GWVSYS--TSEQAELSYKKVS--EGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLL--DSKVIEIL----D 92 (204)
T ss_pred CCcccC--CCCcEEEEEeccC--CCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhh--heEeeEec----C
Confidence 676663 3577889999863 4434 466777788898888888777775 999995321 13344443 3
Q ss_pred CCceEEEEEeccCCCCCC-ceEEEEecccC-CCCcEEEEee-cchhhhhhhhcCCCCCCccccCCCcEEccCCCCCCCCC
Q 004337 629 TGNCVSLLRVNSANSSQS-NMLILQESCTD-PTASFVIYAP-VDIVAMNVVLNGGDPDYVALLPSGFAILPDGTSLHGAN 705 (760)
Q Consensus 629 ~gn~vsllr~~~~~~~~~-~~liLQes~~D-~sgs~vVyAP-vD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~~~~~~~ 705 (760)
+.+.|-=..++..-+-.+ ++.+++-..+| .-|++++... |+-+..- .++ --+..+-+|+.|-|.
T Consensus 93 ~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P--~~~---VR~~~~~~~w~i~P~-------- 159 (204)
T cd08908 93 SQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAP--VAG---VRVNVLLSRYLIEPC-------- 159 (204)
T ss_pred CCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCC--cCc---eEEEEEeeEEEEEEC--------
Confidence 333333333333333333 45555443343 4577777775 5443211 000 012233444444442
Q ss_pred CCCCCCCCceeEEeeehhccCCcccccccchhhhhhhhhhHHHHHHHHhhc
Q 004337 706 IGEAASGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLS 756 (760)
Q Consensus 706 ~~~~~~~gsllTvaFQil~~~~~~a~~~~~sv~tv~~li~~tv~~Ik~al~ 756 (760)
+.|+|-||--.|+= |...+..=-+-..+.|++.-+.|||+.+.
T Consensus 160 ----g~g~t~vtyi~~~D----PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 160 ----GSGKSKLTYMCRID----LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred ----CCCcEEEEEEEEeC----CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 12578888655543 33344333466678899999999999874
No 80
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=92.41 E-value=5.4 Score=40.81 Aligned_cols=163 Identities=20% Similarity=0.214 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcc--cCcc
Q 004337 528 LKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRD--ENTR 605 (760)
Q Consensus 528 l~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd--~~~R 605 (760)
=++.|.|..-|.. .++|.... ..++|+|.+++..+.. + -..++..-+|.+|+.||++|.| +..|
T Consensus 8 ~~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~~~----~--~~~k~~~~i~~~~~~v~~~l~d~~~~~r 73 (206)
T cd08867 8 EKLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTEFT----G--HLYRAEGIVDALPEKVIDVIIPPCGGLR 73 (206)
T ss_pred HHHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCCCC----C--EEEEEEEEEcCCHHHHHHHHHhcCcccc
Confidence 3455555555543 27899774 3478999998643211 2 2246666779999999999999 8999
Q ss_pred chhhhccCCCcceeEeecccCCCCCceEEEEEeccC--C-CCCCceEEEEecccCCCCcEEEE-eecchhhhhhhhcCCC
Q 004337 606 SEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSA--N-SSQSNMLILQESCTDPTASFVIY-APVDIVAMNVVLNGGD 681 (760)
Q Consensus 606 ~eWdils~G~~vqe~~~ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~~D~sgs~vVy-APvD~~~m~~vm~G~d 681 (760)
.+||-... ..+.+.+| ++.+.|........ . -...+...+|-......|++++. .-|+-+.+ ...
T Consensus 74 ~~Wd~~~~--~~~~le~i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~-----p~~ 142 (206)
T cd08867 74 LKWDKSLK--HYEVLEKI----SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPER-----PPT 142 (206)
T ss_pred cccccccc--ceEEEEEe----CCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCC-----CCC
Confidence 99995432 24555565 33444433322111 1 12345666664333333566554 33433321 112
Q ss_pred CCCc--cccCCCcEEccCCCCCCCCCCCCCCCCCceeEEeeehhcc
Q 004337 682 PDYV--ALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVD 725 (760)
Q Consensus 682 ~~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~ 725 (760)
+.+| ..+++||.|-|.... .++|.+|--+|+=..
T Consensus 143 ~~~VR~~~~~~g~~i~p~~~~----------~~~t~~~~~~~~Dpk 178 (206)
T cd08867 143 PGFVRGYNHPCGYFCSPLKGS----------PDKSFLVLYVQTDLR 178 (206)
T ss_pred CCcEEEEeecCEEEEEECCCC----------CCceEEEEEEEeccC
Confidence 3333 467888888884321 135777766665544
No 81
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=92.01 E-value=0.95 Score=42.82 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=27.6
Q ss_pred CCCCChHHHH-HHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccc
Q 004337 94 YHRHTQHQIQ-EMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 139 (760)
Q Consensus 94 RtrfT~~Ql~-~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQ 139 (760)
|.+||.++.. .+...+... ....++|+++|+++.++..|.+
T Consensus 10 rr~ys~EfK~~aV~~~~~~g-----~sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 10 RRRRTTQEKIAIVQQSFEPG-----MTVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCCHHHHHHHHHHHHcCC-----CCHHHHHHHHCcCHHHHHHHHH
Confidence 3457777654 344444422 2355789999999999999954
No 82
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=91.36 E-value=2.1 Score=45.54 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=50.0
Q ss_pred CCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeec
Q 004337 545 STAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHI 623 (760)
Q Consensus 545 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~i 623 (760)
...++|..- ...++|+|-++. + +-+++-+.-+-+++|++.+|++|.|...|.+||...- .++.+..+
T Consensus 53 a~~~~W~l~--~dkdgIkVytr~-----~---s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~--e~~vI~ql 119 (236)
T cd08914 53 AAKSGWEVT--STVEKIKIYTLE-----E---HDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFL--SCEVIDWV 119 (236)
T ss_pred cccCCCEEE--EccCCEEEEEec-----C---CCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhc--eEEEEEEe
Confidence 346889755 345789999984 1 1257888888889999999999999999999995331 23444444
No 83
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=90.31 E-value=13 Score=38.48 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=76.5
Q ss_pred CCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhh-hhcccCccchhhhccCCCcceeEeeccc
Q 004337 547 AHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFD-FLRDENTRSEWDILSNGGVVQEMAHIAN 625 (760)
Q Consensus 547 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~-FLrd~~~R~eWdils~G~~vqe~~~ia~ 625 (760)
..+|..-. ...++|+|-+++..+ . | .+-+.-+-+++||+.||+ .|.|...|.+||.-. ..++.+.+|
T Consensus 24 ~~~W~l~~-~~~~gi~V~s~~~~~-~----~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~--~~~~vi~~~-- 91 (209)
T cd08906 24 EENWKFEK-NNDNGDTVYTLEVPF-H----G--KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTV--SACQVLQRV-- 91 (209)
T ss_pred ccCCEEEE-ecCCCCEEEEeccCC-C----C--cEEEEEEEEcCCHHHHHHHHHhChhhccccCccc--hhhhheeec--
Confidence 35898542 235789999976532 1 2 344777777999999985 789999999999432 123444444
Q ss_pred CCCCCceEEEEEeccC---CC-CCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCCCCCCc--cccCCCcEEcc
Q 004337 626 GRDTGNCVSLLRVNSA---NS-SQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYV--ALLPSGFAILP 696 (760)
Q Consensus 626 g~~~gn~vsllr~~~~---~~-~~~~~liLQes~~D~sgs~vVyAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~P 696 (760)
++.+.|. ..+... ++ ...++.+++-..-+..+..++...++.+.+ ...+.+| ...++||.|.|
T Consensus 92 --~~~~~i~-Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~-----P~~~~~VR~~~~~~G~~i~~ 160 (209)
T cd08906 92 --DDNTLVS-YDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHK-----PPLSKYVRGENGPGGFVVLK 160 (209)
T ss_pred --cCCcEEE-EEEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCC-----CCCCCeEEEeeeccEEEEEE
Confidence 3333433 232221 12 334666665555555554445455544321 1234444 35899999998
No 84
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=89.88 E-value=2.4 Score=44.08 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=41.6
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhc
Q 004337 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDIL 611 (760)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdil 611 (760)
...+|...... +||.|..+++....|.- -= +---++.-|+.|+||+.+..+|.+||-.
T Consensus 21 ~~~~Wkl~k~~--~~~~v~~k~~~ef~gkl----~R--~Egvv~~~~~ev~d~v~~~~~r~~Wd~~ 78 (202)
T cd08902 21 LEEEWRVAKKS--KDVTVWRKPSEEFGGYL----YK--AQGVVEDVYNRIVDHIRPGPYRLDWDSL 78 (202)
T ss_pred cccCcEEEEeC--CCEEEEEecCCcCCCce----EE--EEEEecCCHHHHHHHHhcccchhcccch
Confidence 56789866433 88999999885544422 11 1111278889999999999999999943
No 85
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.64 E-value=5.5 Score=37.35 Aligned_cols=133 Identities=11% Similarity=0.116 Sum_probs=74.4
Q ss_pred ecceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCce-eEEEEeeee
Q 004337 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRE-SYYVRYCKQ 416 (760)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re-~~fLRyckq 416 (760)
|++-.|..++..+-++|.|.+.|.+-+|.+ ...+++..+ + ++. . ++.. .|. +.+++|+..
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v----~~~~~l~~~--~--~~~-~-~~~~---------~~~~~~~~~~~~~ 62 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNL----AESRLLERN--G--NRV-V-LEQT---------GKQGILFFKFEAR 62 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCc----eEEEEEEcC--C--CEE-E-EEEe---------eeEEEEeeeeeEE
Confidence 345677778999999999999999999977 455666542 1 121 1 1110 111 222233222
Q ss_pred eCCceEEEEEEecCCCCCCCCcceeec----C--cc-ceEEecCC-CceEEEEEEeeeecCcccchhhHhhhhchhhHHH
Q 004337 417 HGEGTWAVVDVSLDNLRPSPAVRCRRR----P--SG-CLIQEMPN-GYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGA 488 (760)
Q Consensus 417 ~~~g~w~VvDvS~d~~~~~~~~~~~rl----P--SG-clIq~~~n-G~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA 488 (760)
++.++....- +...++++.. + .| .-+++.++ |.+.|+|--|++... .++ -++++.-+-=+.
T Consensus 63 ------v~~~~~~~~~-~~~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~~p---~~l~~~~~~~~~ 131 (144)
T cd08866 63 ------VVLELREREE-FPRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-FAP---VFLVEFVLRQDL 131 (144)
T ss_pred ------EEEEEEEecC-CCceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-CCC---HHHHHHHHHHHH
Confidence 1111111000 0011111111 1 12 23677887 789999988777653 333 367766666677
Q ss_pred HHHHHHHHHHHH
Q 004337 489 KRWVATLDRQCE 500 (760)
Q Consensus 489 ~rWla~LqR~ce 500 (760)
++-++.|.++||
T Consensus 132 ~~~l~~lr~~ae 143 (144)
T cd08866 132 PTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHh
Confidence 888888888776
No 86
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=89.38 E-value=6.1 Score=38.50 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=75.6
Q ss_pred ecceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeee
Q 004337 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQH 417 (760)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~ 417 (760)
..+-+|.-.+..+-+++-|..+|-+.||.+ ..++|++.|..|- |+ . ..+....+ ..+.-|.=|.+ +
T Consensus 4 ~~si~i~a~~~~v~~lvaDv~~~P~~~~~~----~~~~~l~~~~~~~--~~-r---~~i~~~~~--g~~~~w~s~~~--~ 69 (146)
T cd08860 4 DNSIVIDAPLDLVWDMTNDIATWPDLFSEY----AEAEVLEEDGDTV--RF-R---LTMHPDAN--GTVWSWVSERT--L 69 (146)
T ss_pred eeEEEEcCCHHHHHHHHHhhhhhhhhccce----EEEEEEEecCCeE--EE-E---EEEEeccC--CEEEEEEEEEE--e
Confidence 345667778999999999999999999977 5567777543321 11 1 11122222 12222322433 2
Q ss_pred CCceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHH
Q 004337 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDR 497 (760)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR 497 (760)
....|-|.=..+... ++ ..+=-...+++.++| |+|++..+++...-. .+.-+++..-.--.-+.=+++|.+
T Consensus 70 ~~~~~~i~~~~~~~~---p~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~Lk~ 140 (146)
T cd08860 70 DPVNRTVRARRVETG---PF---AYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQMARIKK 140 (146)
T ss_pred cCCCcEEEEEEecCC---Cc---ceeeeeEEEEECCCC-EEEEEEEEEEECCCC--ccchHHHHHHHhcccHHHHHHHHH
Confidence 333343331122111 11 122223446888887 999999998865311 222223322222334556677777
Q ss_pred HHHH
Q 004337 498 QCER 501 (760)
Q Consensus 498 ~cer 501 (760)
.+|+
T Consensus 141 ~aE~ 144 (146)
T cd08860 141 KIEA 144 (146)
T ss_pred Hhhh
Confidence 6665
No 87
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=89.16 E-value=7 Score=41.42 Aligned_cols=186 Identities=19% Similarity=0.264 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCcccccCCCC-----Cce-EEEEccCCCCCCCCCc-cEEEEEEEeeccCChhhHhhh
Q 004337 526 SMLKLAERMVISFCAGVSASTAHTWTTLSGTGA-----DDV-RVMTRKSVDDPGRPPG-IVLSAATSFWLPVPPKRVFDF 598 (760)
Q Consensus 526 sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~-----~dv-rv~~r~~~~~~g~p~G-~vl~A~tS~wLpv~p~~vf~F 598 (760)
-|+.||..-+.-|-. +.-...--|.+..+.+. |.. ++..+.. ...|.| .+..+-++-.+++.|..|.++
T Consensus 3 ~~~~lA~~am~Ell~-~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~---~~~~~~~~~eASR~~glV~m~~~~lVe~ 78 (229)
T cd08875 3 GLLELAEEAMDELLK-LAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG---GSKPGGFTTEASRACGLVMMNAIKLVEI 78 (229)
T ss_pred HHHHHHHHHHHHHHH-HhccCCCCceecCCCCccccCHHHHhhcccCcC---CCCCCCCeEEEEeeeEEEecCHHHHHHH
Confidence 378899999999986 44555778998765532 222 2222221 112433 577888888999999999999
Q ss_pred hcccCccch-hhhccCCCcceeEeecccCCCCCceEEEEEeccCC----CCCCceEEEEecccCCCCcEEEEe-ecchhh
Q 004337 599 LRDENTRSE-WDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSAN----SSQSNMLILQESCTDPTASFVIYA-PVDIVA 672 (760)
Q Consensus 599 Lrd~~~R~e-Wdils~G~~vqe~~~ia~g~~~gn~vsllr~~~~~----~~~~~~liLQes~~D~sgs~vVyA-PvD~~~ 672 (760)
|.|..++.+ .+-.+.-..+-++..=..|..++..+.|+..+-.- ..-.+..+|.-|.--+-|+.+|-- .+|...
T Consensus 79 lmD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~ 158 (229)
T cd08875 79 LMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQ 158 (229)
T ss_pred HhChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccc
Confidence 999666665 44233322222222222223456677787655221 123578999988777788876643 444210
Q ss_pred hhhhhcCCCCC---CccccCCCcEEccCCCCCCCCCCCCCCCCCceeEEeeehhccCCccccc
Q 004337 673 MNVVLNGGDPD---YVALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVDSVPTAKL 732 (760)
Q Consensus 673 m~~vm~G~d~~---~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~~ 732 (760)
+...+. .--.+||||-|=| . .+|+|.+|+-=++-++..+.-.+
T Consensus 159 -----~~p~~~~~~r~~~~PSGcLIq~----~--------~nG~SkVtwVeH~e~d~~~~~~l 204 (229)
T cd08875 159 -----TAPPPASFVRCRRLPSGCLIQD----M--------PNGYSKVTWVEHVEVDEKPVHLL 204 (229)
T ss_pred -----cCCCCCCccEEEEecCcEEEEE----C--------CCCceEEEEEEEEeccCCccccc
Confidence 111122 2358999999977 1 12678899887777766444333
No 88
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=89.06 E-value=4.8 Score=41.42 Aligned_cols=109 Identities=16% Similarity=0.243 Sum_probs=62.6
Q ss_pred CCCcccccCCCC--CceEEEEccCCCCCCCCCccEEEEEEEeecc-CChhhHhhhhcccCccchhhhccCCCcceeEeec
Q 004337 547 AHTWTTLSGTGA--DDVRVMTRKSVDDPGRPPGIVLSAATSFWLP-VPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHI 623 (760)
Q Consensus 547 ~~~W~~l~~~~~--~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~i 623 (760)
+++|.......+ .+|+|-.|+..+ . | +.--++...++ +||+.|+++|.|...|.+||-.. .|.--|
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~~-s----~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~~l 89 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPKG-T----G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-----IEHETL 89 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccCC-C----C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-----eeEEEE
Confidence 378998754322 238877776532 1 2 23456666775 89999999999999999999643 332223
Q ss_pred ccCCCCCceEEEEEeccCCC-CCCceEEEEecccCCCCcEEEEe
Q 004337 624 ANGRDTGNCVSLLRVNSANS-SQSNMLILQESCTDPTASFVIYA 666 (760)
Q Consensus 624 a~g~~~gn~vsllr~~~~~~-~~~~~liLQes~~D~sgs~vVyA 666 (760)
.+..+.++.|--......-+ ...+..+....+.|.-|+++|..
T Consensus 90 e~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 90 EEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred EecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 23223244443333332111 22344444445666566666654
No 89
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.06 E-value=1.1 Score=35.77 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=16.8
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHH
Q 004337 149 HERHENTQLRTENEKLRADNMRY 171 (760)
Q Consensus 149 ~~r~e~~~l~~ene~L~~en~~l 171 (760)
|.+.++..|++.++.|+++|++|
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L 24 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSL 24 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888888888777763
No 90
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=87.59 E-value=7.6 Score=36.01 Aligned_cols=120 Identities=12% Similarity=0.154 Sum_probs=65.0
Q ss_pred ceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCC
Q 004337 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGE 419 (760)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~ 419 (760)
+-.+...+.++.+.|.|.+.|.+-+|.+. .+++++. |...+ +....+ .|+ ..|--...+|..--++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~----~~~~~~~-------~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~ 71 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCE----SLEKIGP-------NEYEA-TVKLKV-GPV-KGTFKGKVELSDLDPP 71 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchh----hccccCC-------CeEEE-EEEEEE-ccE-EEEEEEEEEEEecCCC
Confidence 44567788999999999999999999764 3555542 11111 111112 232 2232223455543344
Q ss_pred ceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhh
Q 004337 420 GTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVS 481 (760)
Q Consensus 420 g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~ 481 (760)
..+++.-..-.. ..+ ...=--+-+.+. +|.++|||.-+++... .+..|..++++
T Consensus 72 ~~~~~~~~~~~~---~~~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~~ 125 (144)
T cd05018 72 ESYTITGEGKGG---AGF---VKGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLID 125 (144)
T ss_pred cEEEEEEEEcCC---Cce---EEEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHHH
Confidence 554444221111 011 111122446777 6679999999999753 34445555543
No 91
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=87.16 E-value=0.52 Score=56.17 Aligned_cols=51 Identities=16% Similarity=0.397 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 97 HTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 97 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
|+.- ...|...|..|..|+..+...+|.+.||..+.||.||++++++....
T Consensus 564 ~~~p-~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv 614 (1007)
T KOG3623|consen 564 FNHP-TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSV 614 (1007)
T ss_pred cCCc-HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhh
Confidence 4433 78899999999999999999999999999999999999999887763
No 92
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=86.95 E-value=11 Score=34.41 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=69.0
Q ss_pred ceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCC
Q 004337 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGE 419 (760)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~ 419 (760)
+..|...+..+-+.|.|.+.|.+-+|.+ ..+++...+. ..|+...++... . +.+. -+|.. .++
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~~~~~---~~g~~~~~~~~~----g----~~~~-~~i~~-~~~ 68 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAV----ASCELEGGGP---GVGAVRTVTLKD----G----GTVR-ERLLA-LDD 68 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCc----ceEEeecCCC---CCCeEEEEEeCC----C----CEEE-EEehh-cCc
Confidence 3457778999999999999999888854 4556655432 134432222110 0 1111 11111 111
Q ss_pred ceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHH
Q 004337 420 GTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQC 499 (760)
Q Consensus 420 g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~c 499 (760)
+.-.|. ..+... ..+ +...-.-+-+.+.++|.|+|+|..+.+.... +..+++...+-=+-...++.|.++|
T Consensus 69 ~~~~i~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 69 AERRYS-YRIVEG-PLP---VKNYVATIRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred cCCEEE-EEecCC-CCC---cccceEEEEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 100111 111110 001 1111123557788887899999999887755 3334444444444556666666555
No 93
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=86.95 E-value=0.88 Score=37.15 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=35.3
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccc
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNK 141 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNR 141 (760)
||+|..+|-+|-..+-..++... ...+||+++|+...+|..|..||
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 46778899999888888888776 57789999999999999999874
No 94
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.41 E-value=2.5 Score=36.95 Aligned_cols=50 Identities=28% Similarity=0.474 Sum_probs=36.8
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH----HHHHHHhh
Q 004337 149 HERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID----RISAIAAK 219 (760)
Q Consensus 149 ~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~----r~~~~~~~ 219 (760)
+.-.....|+.+++.|+.+|..+.+ +...|+.||.+|++|.. |+.++++|
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~---------------------e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKE---------------------ENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345567788888888888888876 45789999999999876 44554444
No 95
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=86.26 E-value=9.1 Score=35.90 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=78.4
Q ss_pred cceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004337 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (760)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~ 418 (760)
.+..|...+..+.+++-|.+.|.+.+|.+ ...++++.+. ++ +.+++.+..|. -.|++. .|++-. .
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~----~~~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~-~ 67 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWC----TASRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV-P 67 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCc----cccEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-C
Confidence 35566778889999999999999999977 4456776433 12 22223333332 134443 343321 2
Q ss_pred CceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHH
Q 004337 419 EGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQ 498 (760)
Q Consensus 419 ~g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ 498 (760)
+. .+ -=.++++. ...+=--..+++.++|.|+|+|.-|++..-. ++.+|++.-+.=..++-|.++.+.
T Consensus 68 ~~-~i-~~~~~~g~-------~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~l~~f~~~ 134 (138)
T cd07813 68 PE-SI-EAELVDGP-------FKHLEGEWRFKPLGENACKVEFDLEFEFKSR----LLEALAGLVFDEVAKKMVDAFEKR 134 (138)
T ss_pred CC-EE-EEEecCCC-------hhhceeEEEEEECCCCCEEEEEEEEEEECCH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 32 11223321 1112224567889999999999999998733 334444333334467778888777
Q ss_pred HHH
Q 004337 499 CER 501 (760)
Q Consensus 499 cer 501 (760)
|++
T Consensus 135 ~~~ 137 (138)
T cd07813 135 AKQ 137 (138)
T ss_pred Hhh
Confidence 764
No 96
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=86.03 E-value=11 Score=37.75 Aligned_cols=166 Identities=20% Similarity=0.297 Sum_probs=95.1
Q ss_pred HHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhh
Q 004337 530 LAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 530 La~RM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
|+.+....|.. ......++|.........++.+ ++... +.+ ..+...++..-++.++..+|..|.+... +||
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~~~~~~~~~~~--~~~~~--~~~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd 73 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLYKDKKNGDVYY--KKVSP--SDS-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QWD 73 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEEEEETTTCEEE--EEEEC--SSS-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HHS
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEeEccCCCeEEE--EEeCc--ccc-ccceEEEEEEEEcCChHHHHHHHHhhHh--hcc
Confidence 45555555554 3356778999886333344443 33321 111 2456678888889888877777777444 999
Q ss_pred hccCCCcceeEeecccCCCCCceEEEEEeccCC--CC-CCceEEEEecccCCCCcEEE-EeecchhhhhhhhcCCCCCCc
Q 004337 610 ILSNGGVVQEMAHIANGRDTGNCVSLLRVNSAN--SS-QSNMLILQESCTDPTASFVI-YAPVDIVAMNVVLNGGDPDYV 685 (760)
Q Consensus 610 ils~G~~vqe~~~ia~g~~~gn~vsllr~~~~~--~~-~~~~liLQes~~D~sgs~vV-yAPvD~~~m~~vm~G~d~~~v 685 (760)
-... .++.+..| +++..|.....+..- +- ..+.++++-...+..|+++| +..||-+..... .+..|
T Consensus 74 ~~~~--~~~~le~~----~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~----~~~~V 143 (206)
T PF01852_consen 74 KMCV--EAEVLEQI----DEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN----SKGYV 143 (206)
T ss_dssp TTEE--EEEEEEEE----ETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-----TTSE
T ss_pred cchh--hheeeeec----CCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc----ccCcc
Confidence 5432 23444444 233555555444322 22 24566666655567776554 458887643221 23344
Q ss_pred --cccCCCcEEccCCCCCCCCCCCCCCCCCceeEEeeehhcc
Q 004337 686 --ALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVD 725 (760)
Q Consensus 686 --~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~ 725 (760)
-+++|||.|-|.+. +.|.+|.-.|+=..
T Consensus 144 R~~~~~s~~~i~~~~~------------~~~~vt~~~~~D~~ 173 (206)
T PF01852_consen 144 RAEILISGWVIRPLGD------------GRTRVTYVSQVDPK 173 (206)
T ss_dssp EEEEESEEEEEEEETT------------CEEEEEEEEEEESS
T ss_pred eeeeeeEeEEEEEccC------------CCceEEEEEEECCC
Confidence 38999999999432 23888877776544
No 97
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=85.09 E-value=6.1 Score=41.51 Aligned_cols=109 Identities=21% Similarity=0.297 Sum_probs=78.3
Q ss_pred EechhhHHHHhcCh---hhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCc
Q 004337 344 IMNHISLVEILMDV---NQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEG 420 (760)
Q Consensus 344 ~~~~~~LVe~lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g 420 (760)
.+.|..+-++|+|. .+|=.+- .+-.|++.... .|+ .++|-+.+.|.|+- .||+-++|---+.++.
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~v----i~~e~ie~d~~--tg~-----~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k 130 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDMV----IELETIEEDPV--TGT-----EVVYWVKKFPFPMS-NRDYVYVRRWWESDEK 130 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHh----hhheeeeecCC--CCc-----eEEEEEEeCCcccC-CccEEEEEEEEecCCc
Confidence 45688999999995 6898774 33345554432 343 78999999998876 5999999888877777
Q ss_pred eEEEEEEecCCCC--C-CCCcceeecCccceEE-----ecCCC-ceEEEEEEe
Q 004337 421 TWAVVDVSLDNLR--P-SPAVRCRRRPSGCLIQ-----EMPNG-YSKVTWVEH 464 (760)
Q Consensus 421 ~w~VvDvS~d~~~--~-~~~~~~~rlPSGclIq-----~~~nG-~skVtwVeH 464 (760)
.-+||-.|++.-- + ..++|..-.=||.+|| +-++| .|-++|++|
T Consensus 131 ~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 131 DYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred eEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 7778877776321 1 1458888999999999 55555 355566554
No 98
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.37 E-value=3.9 Score=36.33 Aligned_cols=60 Identities=25% Similarity=0.357 Sum_probs=41.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH----HHHHHHhh
Q 004337 146 KTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID----RISAIAAK 219 (760)
Q Consensus 146 Kr~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~----r~~~~~~~ 219 (760)
|-++.-.....|+-|.+.|+.+|..+.+.. ..+......|..||.+||+|.. |++++++|
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~--------------~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEV--------------QNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445556678888888888888887765 2223345669999999999985 66666554
No 99
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=84.23 E-value=16 Score=33.63 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=73.6
Q ss_pred cceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004337 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (760)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~ 418 (760)
.+..|...+.++.+.|.|.+.|.+.+|.+ ..++++..+..| .-...+ +.+ ...+.++-+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~----~~~~~~~~~~~~----~~~~~~--~~~--~~~~~~~~~~~~~~~~~- 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKV----KSVEVLLRDNDG----RPEMVR--IGV--GAYGIKDTYALEYTWDG- 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcce----EEEEEeccCCCC----CEEEEE--EEE--eeeeEEEEEEEEEEEcC-
Confidence 45677889999999999999999999975 345666544322 211122 222 12244555556665532
Q ss_pred Cce--EEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHH
Q 004337 419 EGT--WAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLD 496 (760)
Q Consensus 419 ~g~--w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~Lq 496 (760)
... |-+.+ +. .+.... .-+-+++.++ .|+|||.-+++..- .+ ...++....--+.+.-+..|.
T Consensus 73 ~~~i~~~~~~----~~---~~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~l~ 137 (140)
T cd07819 73 AGSVSWTLVE----GE---GNRSQE---GSYTLTPKGD-GTRVTFDLTVELTV-PL---PGFLKRKAEPLVLDEALKGLK 137 (140)
T ss_pred CCcEEEEEec----cc---ceeEEE---EEEEEEECCC-CEEEEEEEEEEecC-CC---CHHHHHHhhhHHHHHHHHhHh
Confidence 222 22221 11 111111 2356788877 59999999998754 23 333443334444555555554
Q ss_pred HH
Q 004337 497 RQ 498 (760)
Q Consensus 497 R~ 498 (760)
++
T Consensus 138 ~~ 139 (140)
T cd07819 138 KR 139 (140)
T ss_pred hh
Confidence 43
No 100
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=83.74 E-value=5.6 Score=41.40 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=63.6
Q ss_pred eeeeeehhhhcCCCCccCceeEEEEe-eeeeCC-ceEEEEEEecCCCC-C---CCCcceeecCccceEEecCC---CceE
Q 004337 388 ALQVMTAEFQVPSPLVPTRESYYVRY-CKQHGE-GTWAVVDVSLDNLR-P---SPAVRCRRRPSGCLIQEMPN---GYSK 458 (760)
Q Consensus 388 ~lqlm~aEl~v~SPLvp~Re~~fLRy-ckq~~~-g~w~VvDvS~d~~~-~---~~~~~~~rlPSGclIq~~~n---G~sk 458 (760)
...+.|.+..+|-| +..|+|..|.. +...+. ..++|+..+++.-. + ..++|.+ -=||..|+..|. +-..
T Consensus 90 ~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y~SgE~~~~~p~~~~~~~~ 167 (208)
T cd08864 90 VTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-YASVEKISYLPDADGKSNK 167 (208)
T ss_pred eEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-EEEEEEEEEcCccCCCcCC
Confidence 56788888889988 89999999999 666652 67799999986432 2 2678887 789999998885 4789
Q ss_pred EEEEEeeeecCc-ccch
Q 004337 459 VTWVEHVEVDDR-GVHN 474 (760)
Q Consensus 459 VtwVeH~e~d~~-~vh~ 474 (760)
|+|+==...|+. .||.
T Consensus 168 vew~maT~sDpGG~IP~ 184 (208)
T cd08864 168 VEWIMATRSDAGGNIPR 184 (208)
T ss_pred EEEEEEEeeCCCCcCcH
Confidence 999983334444 3554
No 101
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=83.42 E-value=31 Score=31.72 Aligned_cols=134 Identities=12% Similarity=0.097 Sum_probs=72.5
Q ss_pred ceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCC
Q 004337 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGE 419 (760)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~ 419 (760)
+..|...+..+-++|.|.+.|.+-+|.+ ..+++++. . +. . +.+-.|....+++ ..+++. .+.
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~----~~~~~~~~--~----~~-~-----~~~~~~~g~~~~~-~~~v~~-~~~ 66 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHV----ESVEQLDD--T----RS-H-----WKAKGPAGLSVEW-DAEITE-QVP 66 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhh----cEEEEcCC--C----ce-E-----EEEecCCCCcEEE-EEEEec-cCC
Confidence 4456668899999999999999999965 33455532 1 11 1 1111232333433 445544 334
Q ss_pred ceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHH
Q 004337 420 GTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQC 499 (760)
Q Consensus 420 g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~c 499 (760)
+..++.+ ..++.. .+....+ +++.++|.|+||+--|.+......-.++-+++..-.-=..+.+|..|.+++
T Consensus 67 ~~~i~~~-~~~~~~--~~~~~~~------f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~a 137 (139)
T cd07817 67 NERIAWR-SVEGAD--PNAGSVR------FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLV 137 (139)
T ss_pred CCEEEEE-ECCCCC--CcceEEE------EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 4433332 332221 1111222 467777789999999998775433334444554444444555666665554
Q ss_pred H
Q 004337 500 E 500 (760)
Q Consensus 500 e 500 (760)
|
T Consensus 138 E 138 (139)
T cd07817 138 E 138 (139)
T ss_pred h
Confidence 4
No 102
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=83.17 E-value=8.8 Score=35.88 Aligned_cols=137 Identities=11% Similarity=0.038 Sum_probs=67.5
Q ss_pred ceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCC
Q 004337 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGE 419 (760)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~ 419 (760)
+.+|...+..+-++|-|.++|-+.+|+ . .++++..+. ++.. ++. ....+.--...+...+++ ..+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~--~---~~~~~~~~~----~~~~--~~~--~~~~~~g~~~~~~~~~~~--~~~ 68 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT--V---HVERLELDG----GVER--LRM--WATAFDGSVHTWTSRRVL--DPE 68 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC--c---eEEEEEEcC----CEEE--EEE--EEEcCCCcEEEEEEEEEE--cCC
Confidence 456777899999999999999998876 2 444554321 2221 111 111111111222222222 122
Q ss_pred ceEE-EEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHH
Q 004337 420 GTWA-VVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQ 498 (760)
Q Consensus 420 g~w~-VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ 498 (760)
+..+ ...+...+. + ...=.=..+++.++|.|+|||.-+++.... ++ +.-+++..-+.=--.+.|++|.++
T Consensus 69 ~~~i~~~~~~~~~~----~---~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~lk~~ 139 (142)
T cd08861 69 GRRIVFRQEEPPPP----V---ASMSGEWRFEPLGGGGTRVTLRHDFTLGID-SP-EAVPWIRRALDRNSRAELAALRAA 139 (142)
T ss_pred CCEEEEEEeeCCCC----h---hhheeEEEEEECCCCcEEEEEEEEEEECCC-Cc-hhHHHHHHHHccccHHHHHHHHHH
Confidence 3321 221211111 1 011112345777778899999999997733 22 333333333333345566666655
Q ss_pred HH
Q 004337 499 CE 500 (760)
Q Consensus 499 ce 500 (760)
+|
T Consensus 140 ~E 141 (142)
T cd08861 140 AE 141 (142)
T ss_pred hh
Confidence 55
No 103
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=82.27 E-value=1.9 Score=44.46 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=44.9
Q ss_pred CCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecc-CChhhHhhhhcccCccchhhhc
Q 004337 545 STAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLP-VPPKRVFDFLRDENTRSEWDIL 611 (760)
Q Consensus 545 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdil 611 (760)
-.+.+|..... .++|+|-+|...+ ..+.--++...++ ++|+.++++|.|...|.+||-.
T Consensus 22 ~~~~~W~l~~~--~~~i~Vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 81 (207)
T cd08910 22 LDGAAWELLVE--SSGISIYRLLDEQ------SGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY 81 (207)
T ss_pred CCCCCeEEEEe--cCCeEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH
Confidence 34467987743 4689999887632 2234567777788 9999999999999999999964
No 104
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.76 E-value=4.1 Score=32.49 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 004337 156 QLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAI 216 (760)
Q Consensus 156 ~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 216 (760)
++...++.|++.++.|+.. ...|..||..|+.|+..+...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~---------------------~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAE---------------------YDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHh
Confidence 5677889999999998884 477999999999998887763
No 105
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=79.66 E-value=21 Score=32.64 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=35.7
Q ss_pred ceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004337 447 CLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (760)
Q Consensus 447 clIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ce 500 (760)
+.+.+.++|.|+|+|..... .....++..++...+.=+-++|++.|.++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 34677767789999864322 1123446667777888888899999988886
No 106
>PRK10724 hypothetical protein; Provisional
Probab=78.20 E-value=50 Score=32.84 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=81.8
Q ss_pred ecceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeee
Q 004337 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQH 417 (760)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~ 417 (760)
+.+.+|...+..+.+.+.|.++|-+.+|.. ...+|+.... ++ +.+++.+--.-+ ++-+.-|+.-.
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~----~~s~vl~~~~----~~----~~a~l~v~~~g~--~~~f~srv~~~- 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGC----TGSRVLESTP----GQ----MTAAVDVSKAGI--SKTFTTRNQLT- 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCccc----CeEEEEEecC----CE----EEEEEEEeeCCc--cEEEEEEEEec-
Confidence 456788889999999999999999999855 4455666432 12 456765533322 34333343332
Q ss_pred CCceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHH
Q 004337 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDR 497 (760)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR 497 (760)
.++ .+.+ ..+++ + .+.+=.-.-+++.++|.|+|+.--++|+.. .||.+++....-=.|++=+.+..+
T Consensus 83 ~~~-~I~~-~~~~G----p---F~~l~g~W~f~p~~~~~t~V~~~l~fef~s----~l~~~~~~~~~~~~~~~mv~AF~~ 149 (158)
T PRK10724 83 SNQ-SILM-QLVDG----P---FKKLIGGWKFTPLSQEACRIEFHLDFEFTN----KLIELAFGRVFKELASNMVQAFTV 149 (158)
T ss_pred CCC-EEEE-EecCC----C---hhhccceEEEEECCCCCEEEEEEEEEEEch----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3333 22332 1 233444445678887789999998888653 344455544444455666666654
Q ss_pred HHHHH
Q 004337 498 QCERL 502 (760)
Q Consensus 498 ~cerl 502 (760)
-|+.+
T Consensus 150 Ra~~~ 154 (158)
T PRK10724 150 RAKEV 154 (158)
T ss_pred HHHHH
Confidence 45543
No 107
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=77.80 E-value=19 Score=37.06 Aligned_cols=179 Identities=15% Similarity=0.211 Sum_probs=92.2
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeec-cCChhhHhhhhcccCccchhhhccCCCcceeEeecc
Q 004337 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWL-PVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIA 624 (760)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wL-pv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia 624 (760)
-..+|..... .++|+|-.|...+ . |+ .--++...+ ++|++.+|++|.|...|.+||-.. +|.--|.
T Consensus 19 ~~~~W~l~~~--~~~i~Vy~r~~~~-s----~~-~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-----~~~~~le 85 (207)
T cd08911 19 EPDGWEPFIE--KKDMLVWRREHPG-T----GL-YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-----VELEVVD 85 (207)
T ss_pred cCCCcEEEEE--cCceEEEEeccCC-C----Cc-EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-----eeEEEEE
Confidence 3456987743 4679998887643 1 22 235554545 799999999999999999999543 3332233
Q ss_pred cCCCCCceEEEEEeccCC-CCCCceEEEEecccCCC-CcEEEEe-ecchhhhhhhhcCCCCC--CccccCCCcEEccCCC
Q 004337 625 NGRDTGNCVSLLRVNSAN-SSQSNMLILQESCTDPT-ASFVIYA-PVDIVAMNVVLNGGDPD--YVALLPSGFAILPDGT 699 (760)
Q Consensus 625 ~g~~~gn~vsllr~~~~~-~~~~~~liLQes~~D~s-gs~vVyA-PvD~~~m~~vm~G~d~~--~v~lLPSGF~I~Pdg~ 699 (760)
+..+.++.|--.+....- -...++.+-+-...|.. |.++|.. -|+-+.. ..-+. -|..+.+|+.|-|.+.
T Consensus 86 ~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~-----P~~~g~VRv~~~~~~~~i~p~~~ 160 (207)
T cd08911 86 EDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSY-----PESPKKVRVEDYWSYMVIRPHKS 160 (207)
T ss_pred ccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCC-----CCCCCCEEEEEeEEEEEEEeCCC
Confidence 322334443333333211 12234444443355654 4434432 1221100 01111 2445677888877532
Q ss_pred CCCCCCCCCCCCCCceeEEeeehhccCCcccccccchhh--hhhhhhhHHHHHHHHhhc
Q 004337 700 SLHGANIGEAASGGSLLTVAFQILVDSVPTAKLSLGSVA--TVNNLIACTVERIKASLS 756 (760)
Q Consensus 700 ~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~~~~~sv~--tv~~li~~tv~~Ik~al~ 756 (760)
. ..+|+-++.-++ .+ |...+. .++. .+...+-.++++++.|..
T Consensus 161 ~---------~~~~~~~~~~~~--~d--PgG~IP-~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 161 F---------DEPGFEFVLTYF--DN--PGVNIP-SYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred C---------CCCCeEEEEEEE--eC--CCCccC-HHHHHHHHHhhccHHHHHHHHHHh
Confidence 1 124565554333 22 222221 1222 234445578888888763
No 108
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=77.15 E-value=58 Score=29.67 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=27.5
Q ss_pred ceEEEechhhHHHHhcChhhHhhhhccccccceEeeEee
Q 004337 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLS 378 (760)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 378 (760)
+..|...+.++-+.|.|...|.+-+|.+ ..+++++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~----~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGV----KSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTE----EEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhce----EEEEEcc
Confidence 4567789999999999999999988855 4566666
No 109
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=77.15 E-value=3.3 Score=44.10 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=46.2
Q ss_pred CCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeec
Q 004337 545 STAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHI 623 (760)
Q Consensus 545 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~i 623 (760)
...++|..-.. .++|+|-++... . +++-+.=+-+++|++.||++|.|...|.+||.... .++.+-.|
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s-----~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~--e~~vIe~i 122 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEED-----K---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYR--SCELVQQV 122 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCC-----C---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhcc--EEEEEEec
Confidence 35667975533 489999995531 1 13445556779999999999999999999995331 23444444
No 110
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=76.50 E-value=0.75 Score=39.16 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccc
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 139 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQ 139 (760)
++|++||+++...+-..+. .......++|+++|+++.++..|-+
T Consensus 2 ~~r~~ys~e~K~~~v~~~~----~~g~sv~~va~~~gi~~~~l~~W~~ 45 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYL----ESGESVSEVAREYGISPSTLYNWRK 45 (76)
T ss_dssp -SS----HHHHHHHHHHHH----HHHCHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH----HCCCceEeeecccccccccccHHHH
Confidence 3456799988877766662 1235678899999999999999953
No 111
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=76.49 E-value=3.8 Score=44.56 Aligned_cols=42 Identities=33% Similarity=0.483 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 004337 153 ENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (760)
Q Consensus 153 e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~ 211 (760)
....+++||++|+.|+..+++++. ...+.|+.||++||+.|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~-----------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE-----------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 344567777777777777644431 122338888888888765
No 112
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.43 E-value=8.3 Score=33.56 Aligned_cols=59 Identities=27% Similarity=0.355 Sum_probs=38.1
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH----HHHHHHhhh
Q 004337 148 QHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID----RISAIAAKY 220 (760)
Q Consensus 148 ~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~----r~~~~~~~~ 220 (760)
++.-.....|+-|.+.|+..|..|.... .+.....+.|..||.+||+|-. |++++++|.
T Consensus 14 qqAvdTI~LLQmEieELKEknn~l~~e~--------------q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 14 QQAIDTITLLQMEIEELKEKNNSLSQEV--------------QNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445567777777777777666543 1223345668999999999864 667765543
No 113
>smart00338 BRLZ basic region leucin zipper.
Probab=76.07 E-value=8.4 Score=32.42 Aligned_cols=39 Identities=31% Similarity=0.462 Sum_probs=28.5
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 004337 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEI 210 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el 210 (760)
+.....|..+...|..+|..|... ..+|+.|+..|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~---------------------~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKE---------------------IERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 455667777888888888887774 366777887777765
No 114
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=74.81 E-value=15 Score=44.71 Aligned_cols=120 Identities=19% Similarity=0.304 Sum_probs=69.4
Q ss_pred eccCChhhHhhhhcccC-ccchhhhc-cCCCcceeEeecccCCCCCceEEEEEeccC----CCCCCceEEEEecccCCCC
Q 004337 587 WLPVPPKRVFDFLRDEN-TRSEWDIL-SNGGVVQEMAHIANGRDTGNCVSLLRVNSA----NSSQSNMLILQESCTDPTA 660 (760)
Q Consensus 587 wLpv~p~~vf~FLrd~~-~R~eWdil-s~G~~vqe~~~ia~g~~~gn~vsllr~~~~----~~~~~~~liLQes~~D~sg 660 (760)
-++.+|+.||++|-+.. .|.|||.. ..|..++++ +...+|.--++... --...+..++.--.-+.-|
T Consensus 234 VV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~I-------D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDG 306 (719)
T PLN00188 234 VVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEV-------DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 306 (719)
T ss_pred EecCCHHHHHHHHhccCcccccchhcccceEEEEEe-------cCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCC
Confidence 35899999999997444 99999964 334444444 44445553343211 1122355566555556678
Q ss_pred cEEE-EeecchhhhhhhhcCCCCCCc--cccCCCcEEccCCCCCCCCCCCCCCCCCceeEEeeehhccC
Q 004337 661 SFVI-YAPVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVDS 726 (760)
Q Consensus 661 s~vV-yAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~ 726 (760)
+|++ |-+|.-+.- +--+.+| -+-|+||.|.|--... +..+|+||--+|+=...
T Consensus 307 sYvil~~Sv~Hp~c-----PP~kG~VRg~~~pGGwiIsPL~~~~--------g~~r~lv~~~lqtDlkG 362 (719)
T PLN00188 307 SYVVLFRSREHENC-----GPQPGFVRAHLESGGFNISPLKPRN--------GRPRTQVQHLMQIDLKG 362 (719)
T ss_pred cEEEeeeeeecCCC-----CCCCCeEEEEEeCCEEEEEECCCCC--------CCCceEEEEEEEEccCc
Confidence 7766 555555310 0012222 3779999999932211 12468888887776543
No 115
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=73.33 E-value=5.2 Score=42.91 Aligned_cols=41 Identities=37% Similarity=0.497 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 004337 153 ENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (760)
Q Consensus 153 e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~ 211 (760)
....+++||++|++|+..++... .+.++|+.||.+||+.|.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~------------------~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRL------------------QELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhc
Confidence 34456666666666666665543 123456777777777654
No 116
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=73.05 E-value=73 Score=28.88 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=71.7
Q ss_pred ceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCC
Q 004337 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGE 419 (760)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~ 419 (760)
+..|...+..+-++|-|.++|.+-.|.+ ..+++++.+..+ .|+.-.+...+ -+.+--...|++.--.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~----~~~~~~~~~~~~--~g~~~~~~~~~------~g~~~~~~~~v~~~~p~ 71 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGV----VEVEKITDGPVG--VGTRYHQVRKF------LGRRIELTYEITEYEPG 71 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCc----eEEEEcCCCCCc--CccEEEEEEEe------cCceEEEEEEEEEecCC
Confidence 4456678899999999999999999976 356666544322 24332222111 01111123344432222
Q ss_pred ceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHH
Q 004337 420 GTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQC 499 (760)
Q Consensus 420 g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~c 499 (760)
..+. ... ..+ +-.+.. =+-+++.++| |+|+|-.+++. ..+-.++.+++...+.=+-++++..|.+.+
T Consensus 72 ~~~~-~~~-~~~--~~~~~~------~~~~~~~~~~-t~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 72 RRVV-FRG-SSG--PFPYED------TYTFEPVGGG-TRVRYTAELEP--GGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred cEEE-EEe-cCC--CcceEE------EEEEEEcCCc-eEEEEEEEEcc--chhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 2221 111 111 001111 1336677665 99999998876 333445555665555545566666665554
Q ss_pred H
Q 004337 500 E 500 (760)
Q Consensus 500 e 500 (760)
|
T Consensus 139 e 139 (140)
T cd08865 139 E 139 (140)
T ss_pred h
Confidence 4
No 117
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=72.90 E-value=41 Score=31.70 Aligned_cols=51 Identities=18% Similarity=0.034 Sum_probs=32.3
Q ss_pred EEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004337 449 IQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (760)
Q Consensus 449 Iq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ce 500 (760)
+++. +|+|+|+|..+.++.-.....++.+++...+.=...+.|..|.+++|
T Consensus 99 ~~~~-~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 99 LEPV-GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred EEEc-CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5667 45699999999988755544555555544444444555666655554
No 118
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=71.16 E-value=14 Score=30.94 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=16.0
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHH
Q 004337 151 RHENTQLRTENEKLRADNMRYRE 173 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~e 173 (760)
......|....+.|..+|..|+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777665
No 119
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=69.93 E-value=12 Score=39.64 Aligned_cols=62 Identities=19% Similarity=0.445 Sum_probs=46.5
Q ss_pred cCCCCCCcccccCCCCCceEEEEccCCCCCCCCCccEE-EEEEEeecc-CChhhHhhhhcccCccchhhhc
Q 004337 543 SASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVL-SAATSFWLP-VPPKRVFDFLRDENTRSEWDIL 611 (760)
Q Consensus 543 ~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl-~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdil 611 (760)
-+-..++|..... .++|+|-.|...+ . |+++ .-++..-++ ++++.++++|.|...|.+||.-
T Consensus 21 ~~~~~~~W~l~~~--~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~ 84 (235)
T cd08872 21 EDVGADGWQLFAE--EGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETT 84 (235)
T ss_pred ccCCCCCCEEEEe--CCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhh
Confidence 3445568987643 5689999987643 2 3332 356777778 9999999999999999999964
No 120
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.44 E-value=8.7 Score=36.10 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=15.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHH
Q 004337 194 FDEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 194 ~e~~~L~~EN~~Lk~el~r~~~ 215 (760)
.++.+|++||+.||+.|.+...
T Consensus 36 EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 36 EENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3567788888888888776544
No 121
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=69.31 E-value=16 Score=38.45 Aligned_cols=51 Identities=29% Similarity=0.423 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHH
Q 004337 143 TQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRIS 214 (760)
Q Consensus 143 aK~Kr~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~ 214 (760)
.|.|-+...+++..|..+++.|.++...+++.+ .+|+.||++|.+++.++-
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erl---------------------k~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERL---------------------KRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhch
Confidence 345555566777778888888888888777755 678888888888887654
No 122
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=68.73 E-value=12 Score=33.90 Aligned_cols=45 Identities=36% Similarity=0.537 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 004337 157 LRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAI 216 (760)
Q Consensus 157 l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 216 (760)
+.++++.|+.|.+.|++.. +--++.-+...||.+|++|+.|+..+
T Consensus 22 ~~~e~~~L~eEI~~Lr~qv---------------e~nPevtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQV---------------EHNPEVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred hHHHHHHHHHHHHHHHHHH---------------HhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666544 23457788999999999999998875
No 123
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.32 E-value=9.5 Score=44.25 Aligned_cols=11 Identities=0% Similarity=0.250 Sum_probs=6.2
Q ss_pred CCChHHHHHHH
Q 004337 96 RHTQHQIQEME 106 (760)
Q Consensus 96 rfT~~Ql~~LE 106 (760)
.+++++++.|.
T Consensus 41 ~ltpee~kalG 51 (472)
T TIGR03752 41 ELSPEELKALG 51 (472)
T ss_pred cCCcchhHhcC
Confidence 35666655554
No 124
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=65.80 E-value=14 Score=43.31 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=18.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHH
Q 004337 194 FDEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 194 ~e~~~L~~EN~~Lk~el~r~~~ 215 (760)
.|+++|+.||+.||++|+-+..
T Consensus 316 ~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 316 SENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHhhhHHHHHHHHHHhh
Confidence 5788999999999999886544
No 125
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=63.20 E-value=1.3e+02 Score=28.50 Aligned_cols=132 Identities=12% Similarity=0.083 Sum_probs=69.2
Q ss_pred EEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCce
Q 004337 342 VVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGT 421 (760)
Q Consensus 342 ~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~~g~ 421 (760)
.+...+.++-+++.|.++|.+-.|.+ ..+++++.+.....+..++ +.. ....|.+.-+..|+...-....
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~~~~~~~~~g~~~~-~~~-----~~~~~~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGV----ERVVELEPGDEAGIGARRR-YTW-----RGLLPYRLRFELRVTRIEPLSL 77 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhce----EEEEEccCCCCCCcceEEE-EEE-----EecCCcEEEEEEEEEeecCCcE
Confidence 45567899999999999999999966 5566666322222122222 111 0112322233345544334445
Q ss_pred EEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCc---ccchhhHhhhhchhhHHHHHHHHHH
Q 004337 422 WAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDR---GVHNLYKQLVSTGNAFGAKRWVATL 495 (760)
Q Consensus 422 w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~---~vh~l~rpl~~Sg~afgA~rWla~L 495 (760)
+++. . ++. + ..+ --+-|++-++ +|+||+-.+++..-- -.+.++.+++....-=....-+..|
T Consensus 78 ~~~~-~--~g~----~-~~~---~~~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L 142 (146)
T cd07824 78 LEVR-A--SGD----L-EGV---GRWTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGL 142 (146)
T ss_pred EEEE-E--EEe----e-eEE---EEEEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHH
Confidence 5442 2 111 0 010 1123666555 499999888887542 3556666666444333333344444
No 126
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.10 E-value=17 Score=41.51 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=39.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 004337 146 KTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 146 Kr~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 215 (760)
+..+..+....+.+++..+++|.+.++..+ +....+.++|+.||..|.+|.-+..+
T Consensus 21 ~laq~~k~~s~~~aq~~~~~a~~~ai~a~~--------------~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 21 ELAQCEKAQSRLSAQLVILRAESRAIKAKL--------------QEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777788888888888887766 45556777788888888877766443
No 127
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=62.30 E-value=2e+02 Score=29.76 Aligned_cols=195 Identities=12% Similarity=0.153 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhc-ccCc
Q 004337 526 SMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLR-DENT 604 (760)
Q Consensus 526 sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLr-d~~~ 604 (760)
+-.++++.....|-.-. ....+|.... .+.++++|.++...+ . | --.+.-.-+|+|++.||++|. |-..
T Consensus 5 ~y~~~~~~~~~~~~~~~--~~~~~W~~~~-~~~~gi~v~s~~~~~-~----~--k~~k~e~~i~~~~~~l~~~l~~d~e~ 74 (209)
T cd08905 5 SYIKQGEEALQKSLSIL--QDQEGWKTEI-VAENGDKVLSKVVPD-I----G--KVFRLEVVVDQPLDNLYSELVDRMEQ 74 (209)
T ss_pred HHHHHHHHHHHHHHHHh--ccccCCEEEE-ecCCCCEEEEEEcCC-C----C--cEEEEEEEecCCHHHHHHHHHhchhh
Confidence 33445555555555444 2456898663 235677888866532 2 2 334455567999999996666 5699
Q ss_pred cchhhhccCCCcceeEeecccCCCCCceEEEEEeccC--C-CCCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCCC
Q 004337 605 RSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSA--N-SSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGD 681 (760)
Q Consensus 605 R~eWdils~G~~vqe~~~ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~~D~sgs~vVyAPvD~~~m~~vm~G~d 681 (760)
+.+|+-.+.. ++.+.+| ++.++|.-....+. . -+..++++++-..-+..+..++.--++.+.+ ...
T Consensus 75 ~~~W~~~~~~--~~vl~~i----d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~~s~~~~~~-----P~~ 143 (209)
T cd08905 75 MGEWNPNVKE--VKILQRI----GKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCVLAGMATHFGLM-----PEQ 143 (209)
T ss_pred hceecccchH--HHHHhhc----CCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcEEEEEEeecCCCC-----CCC
Confidence 9999954322 2223333 33344444321111 1 2334566655543332222222222333211 011
Q ss_pred CCC--ccccCCCcEEccCCCCCCCCCCCCCCCCCceeEEeeehhccC-Ccccccccchhhhh-hhhhhHHHHHHHHhhc
Q 004337 682 PDY--VALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATV-NNLIACTVERIKASLS 756 (760)
Q Consensus 682 ~~~--v~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv-~~li~~tv~~Ik~al~ 756 (760)
+.+ +...++|+.+-|-+. ..+.|.+|.-+++=... .|..- |..+ -...-.|++.+|..+.
T Consensus 144 ~~~VR~~~~~~~w~l~p~~~----------~~~~t~v~~~~~~DpkG~iP~~l-----vN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 144 KGFIRAENGPTCIVLRPLAG----------DPSKTKLTWLLSIDLKGWLPKSI-----INQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred CCeEEEEeeccEEEEEECCC----------CCCceEEEEEEeecCCCCCCHHH-----HHHHhHHhHHHHHHHHHHHHh
Confidence 222 345667777777221 11457777666554332 23211 1111 2233466777777664
No 128
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.84 E-value=23 Score=33.05 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=21.5
Q ss_pred hhhhcccccchhhHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 004337 132 LQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYRE 173 (760)
Q Consensus 132 rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~e 173 (760)
-+...||++.-- .+-.+.+++...+++++++++++|..|+.
T Consensus 15 l~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 15 LQYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356688876421 11122244455566666666666655444
No 129
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=61.68 E-value=14 Score=34.90 Aligned_cols=20 Identities=40% Similarity=0.777 Sum_probs=15.7
Q ss_pred chhhhHHHHHHHHHHHHHHH
Q 004337 195 DEHHLRLENARLREEIDRIS 214 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el~r~~ 214 (760)
++.+|++||..||+.|+++.
T Consensus 37 EN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 37 ENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56778888888888888753
No 130
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=58.91 E-value=1.7e+02 Score=27.83 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=25.0
Q ss_pred cceEEEechhhHHHHhcChhhHhhhhccc
Q 004337 339 ETAVVIMNHISLVEILMDVNQWSTVFSGI 367 (760)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~i 367 (760)
.+-.|...+..+-+.|.|.+.|.+-+|.+
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~ 31 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGA 31 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCc
Confidence 34567789999999999999999999865
No 131
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=57.88 E-value=8.4 Score=49.33 Aligned_cols=95 Identities=21% Similarity=0.229 Sum_probs=70.7
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMR 170 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~ 170 (760)
+-.+++++.-|...|-.+|+...+|.-.+...++.-|++..|.+-.|||++++++.+...+. ++-..
T Consensus 445 ~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~-------------arg~~ 511 (1406)
T KOG1146|consen 445 LLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRL-------------ARGEV 511 (1406)
T ss_pred hhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccc-------------ccccc
Confidence 45577899999999999999999999999999999999999999999999888888754332 11122
Q ss_pred HHHHhcCCCCCCCCCCCCC-CCCCcchhh
Q 004337 171 YREALSNASCPNCGGPTAI-GEMSFDEHH 198 (760)
Q Consensus 171 l~ea~~~~~C~~C~g~~~~-~~~~~e~~~ 198 (760)
+..--...-|..|-..... +.+....+.
T Consensus 512 ~~~~~~p~~C~~C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 512 YRCPGKPYPCRACNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred ccCCCCcccceeeeeeeecchHHHHHHHH
Confidence 2233345568888877644 544444333
No 132
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=57.75 E-value=32 Score=39.87 Aligned_cols=88 Identities=14% Similarity=0.254 Sum_probs=51.2
Q ss_pred CCCCChHHHHHHHHH-H-hcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHHhHHHHHHH--------HH
Q 004337 94 YHRHTQHQIQEMEAF-F-KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTEN--------EK 163 (760)
Q Consensus 94 RtrfT~~Ql~~LE~~-F-~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en--------e~ 163 (760)
--++|.+....|.+. | .-..+|..+.-+++-++. |.|.|+|+-.+|....++|+ ..
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv--------------RRKIrNK~SAQESRrkKkeYid~LE~rv~~ 283 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV--------------RRKIRNKRSAQESRRKKKEYIDGLESRVSA 283 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHH--------------HHHHHhhhhhHHHHHhHhhHHHHHhhhhhh
Confidence 346788888887664 2 223456555555555544 33344433334433333333 33
Q ss_pred HHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 004337 164 LRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAI 216 (760)
Q Consensus 164 L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 216 (760)
-.+||.. +.+++++|..+|.-|-++|.++.++
T Consensus 284 ~taeNqe---------------------L~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 284 FTAENQE---------------------LQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred cccCcHH---------------------HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3344444 4457788999999999999887665
No 133
>smart00340 HALZ homeobox associated leucin zipper.
Probab=57.63 E-value=10 Score=29.89 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 004337 197 HHLRLENARLREEIDRISAI 216 (760)
Q Consensus 197 ~~L~~EN~~Lk~el~r~~~~ 216 (760)
+.|..||.||++|++.+.++
T Consensus 15 e~LteeNrRL~ke~~eLral 34 (44)
T smart00340 15 ESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56889999999999998873
No 134
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=57.30 E-value=26 Score=30.40 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHH
Q 004337 154 NTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRI 213 (760)
Q Consensus 154 ~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~ 213 (760)
+.....++..|..|++.....+ +....+..+|+.||..|++|++..
T Consensus 21 ~~~~~~~~k~L~~ERd~~~~~l--------------~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 21 NSVHEIENKRLRRERDSAERQL--------------GDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666665544443 333456778888888888887753
No 135
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=57.06 E-value=76 Score=28.75 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 004337 143 TQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 143 aK~Kr~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 215 (760)
.+.+|..-+++-..|+.+.++=..-+..|..++....++-+..| ..++...+.|..|.+.|..|+.++..
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~---~~lp~~~keLL~EIA~lE~eV~~LE~ 75 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSP---SSLPKKAKELLEEIALLEAEVAKLEQ 75 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcc---ccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777888888887777778888888877666554433 35677888899999999988877654
No 136
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=56.68 E-value=19 Score=39.01 Aligned_cols=29 Identities=14% Similarity=0.322 Sum_probs=19.3
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHhhh
Q 004337 192 MSFDEHHLRLENARLREEIDRISAIAAKY 220 (760)
Q Consensus 192 ~~~e~~~L~~EN~~Lk~el~r~~~~~~~~ 220 (760)
+.+|++.|+.++.+|++|+.+++.+...+
T Consensus 227 leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 227 LEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455667777778888887777754443
No 137
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=55.12 E-value=34 Score=37.48 Aligned_cols=44 Identities=27% Similarity=0.256 Sum_probs=31.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 004337 147 TQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (760)
Q Consensus 147 r~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~ 211 (760)
|+++|.+.+.+..|.+.|...|.+||+. .++|..|.++||+=+.
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~q---------------------a~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKDQ---------------------ASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 3445677778888888888888888873 3567777777776554
No 138
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=54.11 E-value=15 Score=40.59 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=15.3
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHh
Q 004337 152 HENTQLRTENEKLRADNMRYREAL 175 (760)
Q Consensus 152 ~e~~~l~~ene~L~~en~~l~ea~ 175 (760)
.|+..|++||++|++||..|+...
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eV 55 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEV 55 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHH
Confidence 345566777777777777666643
No 139
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.79 E-value=48 Score=41.37 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 004337 156 QLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAI 216 (760)
Q Consensus 156 ~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 216 (760)
.++..+|.|.-+..-|++++.+- |....+.-+.+..||.++|+|||+-|-|++.+
T Consensus 336 ~lkEr~deletdlEILKaEmeek------G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDl 390 (1243)
T KOG0971|consen 336 ALKERVDELETDLEILKAEMEEK------GSDGQAASSYQFKQLEQQNARLKDALVRLRDL 390 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc------CCCCcccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555666666677777655 33333445789999999999999999887664
No 140
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=48.89 E-value=30 Score=37.82 Aligned_cols=43 Identities=30% Similarity=0.365 Sum_probs=26.0
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 004337 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~ 211 (760)
-.+.+.+..||+.|++++..+.+.. .+.++|+.||.+||+.|.
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~------------------~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLL------------------EEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhC
Confidence 3445555666666666666555432 355667777777777755
No 141
>PF15058 Speriolin_N: Speriolin N terminus
Probab=48.68 E-value=33 Score=35.49 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 004337 154 NTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 154 ~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 215 (760)
++-++.++++|..||.+||+.. +|..||++||.-|-+.+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlV----------------------rLirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLV----------------------RLIRENHELKSALGEACA 46 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHH----------------------HHHHHHHHHHHHHHHhhc
Confidence 3456677788888888888744 588899999988666554
No 142
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=48.22 E-value=35 Score=37.01 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 004337 197 HHLRLENARLREEIDRISA 215 (760)
Q Consensus 197 ~~L~~EN~~Lk~el~r~~~ 215 (760)
..|..||+.|+.+++++..
T Consensus 225 ~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 225 AELEKENEALRTQVEQLKK 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 143
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.74 E-value=33 Score=40.04 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 004337 142 RTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (760)
Q Consensus 142 RaK~Kr~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~ 211 (760)
..+.+-.+.+.....+++++++|+.|...+.... .+++...+.|..||.+|+++++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~--------------~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQR--------------GDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445556666666777766655333322 2233445678888888888874
No 144
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=44.06 E-value=17 Score=27.52 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchh
Q 004337 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT 143 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRa 143 (760)
.+++.+...++..|... ..-.++|+++|++...|+.|.+.-+.
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~~ 52 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRALK 52 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46788888888877433 24567899999999999998765443
No 145
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=43.95 E-value=96 Score=26.84 Aligned_cols=44 Identities=25% Similarity=0.258 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHh
Q 004337 154 NTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAA 218 (760)
Q Consensus 154 ~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~~~ 218 (760)
-..|-..++.|+.||..|++. ...+..|++.|++..+.+..-+.
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q---------------------~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQ---------------------EKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777773 35677777777777665444333
No 146
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=43.83 E-value=2.2e+02 Score=24.75 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=31.3
Q ss_pred ceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHH
Q 004337 447 CLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLD 496 (760)
Q Consensus 447 clIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~Lq 496 (760)
.-+.+.+++.|+|+|-...+...... .++.+++...+.-.+.+.+..|+
T Consensus 90 ~~~~~~~~~~t~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T cd07812 90 WRLEPEGDGGTRVTYTVEYDPPGPLL-KVFALLLAGALKRELAALLRALK 138 (141)
T ss_pred EEEEECCCCcEEEEEEEEEecCCcch-hhhhHHHHHHHHhHHHHHHHHHH
Confidence 45666666689999988888775543 55566665555544455555553
No 147
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=42.45 E-value=79 Score=36.48 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhcCCCCceeec
Q 004337 282 LAVAAMEELIRMAQMGEPLWMTS 304 (760)
Q Consensus 282 lA~~Am~El~~la~~~eplWi~~ 304 (760)
-|..||.|+....+..---|.+.
T Consensus 401 eak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 401 EAKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999888887777778764
No 148
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=42.42 E-value=30 Score=27.21 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=29.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccc
Q 004337 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 139 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQ 139 (760)
.+++.|...+...|... ..-.++|+.+|++...|+.+..
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~lg~s~~~V~~~~~ 42 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERLGISRSTVRRILK 42 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHHTSCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHHCCcHHHHHHHHH
Confidence 47889999999999333 3467899999999999887653
No 149
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=40.85 E-value=41 Score=37.76 Aligned_cols=42 Identities=19% Similarity=0.077 Sum_probs=25.5
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 004337 152 HENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (760)
Q Consensus 152 ~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~ 211 (760)
..+..+++||++|+.||..|+..+ .+.+.++.||.+|++.+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l------------------~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERL------------------KSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhhc
Confidence 345566677777777777766654 123446677777665543
No 150
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=40.45 E-value=81 Score=25.66 Aligned_cols=14 Identities=50% Similarity=0.681 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHH
Q 004337 198 HLRLENARLREEID 211 (760)
Q Consensus 198 ~L~~EN~~Lk~el~ 211 (760)
.|..+|..|++++.
T Consensus 36 ~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 36 ELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 151
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.41 E-value=36 Score=33.90 Aligned_cols=72 Identities=24% Similarity=0.299 Sum_probs=39.9
Q ss_pred hhcccccchhhH-----HHHHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 004337 134 VKFWFQNKRTQM-----KTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLRE 208 (760)
Q Consensus 134 VkvWFQNRRaK~-----Kr~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~ 208 (760)
.+|||-|...-. .-.....+...++.++..|+.+...+...+....+ .+. ..+|+.+...|++
T Consensus 56 qkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~-----~~t-------~~el~~~i~~l~~ 123 (169)
T PF07106_consen 56 QKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSS-----EPT-------NEELREEIEELEE 123 (169)
T ss_pred eEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCC-------HHHHHHHHHHHHH
Confidence 378887765422 23333455667777777777777777776643322 122 2335555555555
Q ss_pred HHHHHHHHH
Q 004337 209 EIDRISAIA 217 (760)
Q Consensus 209 el~r~~~~~ 217 (760)
|+..+...+
T Consensus 124 e~~~l~~kL 132 (169)
T PF07106_consen 124 EIEELEEKL 132 (169)
T ss_pred HHHHHHHHH
Confidence 555544433
No 152
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=38.81 E-value=81 Score=28.94 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=39.2
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhh-HHHHHHHHHhHHHHHHHHHHHHhHHH
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQ-MKTQHERHENTQLRTENEKLRADNMR 170 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK-~Kr~~~r~e~~~l~~ene~L~~en~~ 170 (760)
..+..||.+++..|.. ...|.+..|++-.+|+-+..+.... +.+.... .+...+++|+..
T Consensus 34 ~g~R~Yt~~di~~l~~------------I~~llr~~G~~l~~i~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 94 (99)
T cd04765 34 GGRRYYRPKDVELLLL------------IKHLLYEKGYTIEGAKQALKEDGAAAIREEEAE-------ERLPSIRAELLD 94 (99)
T ss_pred CCCeeeCHHHHHHHHH------------HHHHHHHCCCCHHHHHHHHHhccccccchhhHH-------HHHHHHHHHHHH
Confidence 3456799999998854 3335677888888888888765544 4443333 344444555544
Q ss_pred HHH
Q 004337 171 YRE 173 (760)
Q Consensus 171 l~e 173 (760)
|+.
T Consensus 95 l~~ 97 (99)
T cd04765 95 LRD 97 (99)
T ss_pred HHh
Confidence 443
No 153
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=38.65 E-value=14 Score=35.34 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.6
Q ss_pred EEeeccCChhhHhhhhcccCccchhh
Q 004337 584 TSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 584 tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
-++.+|.||++||+||.|.....+|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999999885
No 154
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.00 E-value=1.1e+02 Score=32.03 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhHHHHHHHh
Q 004337 157 LRTENEKLRADNMRYREAL 175 (760)
Q Consensus 157 l~~ene~L~~en~~l~ea~ 175 (760)
..++...|+.+|..|++.+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555543
No 155
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=37.85 E-value=83 Score=34.60 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=18.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHH
Q 004337 190 GEMSFDEHHLRLENARLREEIDRISAI 216 (760)
Q Consensus 190 ~~~~~e~~~L~~EN~~Lk~el~r~~~~ 216 (760)
+.+++.+++|+.+...|.+|++.+..+
T Consensus 258 ~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 258 EGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777776654
No 156
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=37.53 E-value=23 Score=32.56 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=26.7
Q ss_pred EEEEEeeccCChhhHhhhhcccCccchhhh
Q 004337 581 SAATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (760)
Q Consensus 581 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (760)
....|+.++.||..||++|.|.....+|.-
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p 32 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSP 32 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCc
Confidence 345788999999999999999999999984
No 157
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=37.47 E-value=76 Score=33.54 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 004337 197 HHLRLENARLREEIDRIS 214 (760)
Q Consensus 197 ~~L~~EN~~Lk~el~r~~ 214 (760)
.-|+.+-..+.+|++|+.
T Consensus 182 ~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 182 DALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHcccHHHHHH
Confidence 334444444444444443
No 158
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=37.44 E-value=30 Score=31.62 Aligned_cols=133 Identities=19% Similarity=0.248 Sum_probs=67.7
Q ss_pred EEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeecccCCCCCceEEEEEeccCCCCCCceEEEEecccCCCCcE
Q 004337 583 ATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASF 662 (760)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g~~~gn~vsllr~~~~~~~~~~~liLQes~~D~sgs~ 662 (760)
..++-++.||+.||++|.|.....+|.- .+..+-.+. +.++ -....++..+. ..+-.+-.-.|+.+..
T Consensus 5 ~~~~~v~a~~e~V~~~l~d~~~~~~w~~-----~~~~~~~~~-~~~~-~~~~~~~~~g~-----~~~~~~i~~~~~~~~~ 72 (139)
T PF10604_consen 5 EVSIEVPAPPEAVWDLLSDPENWPRWWP-----GVKSVELLS-GGGP-GTERTVRVAGR-----GTVREEITEYDPEPRR 72 (139)
T ss_dssp EEEEEESS-HHHHHHHHTTTTGGGGTST-----TEEEEEEEE-ECST-EEEEEEEECSC-----SEEEEEEEEEETTTTE
T ss_pred EEEEEECCCHHHHHHHHhChhhhhhhhh-----ceEEEEEcc-cccc-ceeEEEEeccc-----cceeEEEEEecCCCcE
Confidence 4567789999999999999999999973 122222222 1111 11244554321 2233333334444556
Q ss_pred EEEeecchhhhhhhhcCCCCCCccccCCCcEEccCCCCCCCCCCCCCCCCCceeEEeeehhccCCccccc-ccchhhhhh
Q 004337 663 VIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVDSVPTAKL-SLGSVATVN 741 (760)
Q Consensus 663 vVyAPvD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~~-~~~sv~tv~ 741 (760)
+.|.-+ . .+... +=.-|.+.|+| +||.+|.-+.+-. .....+ ..---..+.
T Consensus 73 ~~~~~~--~-------~~~~~----~~~~~~~~~~~-------------~gt~v~~~~~~~~--~~~~~~~~~~~~~~~~ 124 (139)
T PF10604_consen 73 ITWRFV--P-------SGFTN----GTGRWRFEPVG-------------DGTRVTWTVEFEP--GLPGWLAGPLLRPAVK 124 (139)
T ss_dssp EEEEEE--S-------SSSCE----EEEEEEEEEET-------------TTEEEEEEEEEEE--SCTTSCHHHHHHHHHH
T ss_pred EEEEEE--e-------cceeE----EEEEEEEEEcC-------------CCEEEEEEEEEEE--eccchhhHHHHHHHHH
Confidence 666543 0 01110 01113444422 3588876666654 222222 111234456
Q ss_pred hhhhHHHHHHHHhh
Q 004337 742 NLIACTVERIKASL 755 (760)
Q Consensus 742 ~li~~tv~~Ik~al 755 (760)
..+...++++|+.+
T Consensus 125 ~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 125 RIVREALENLKRAA 138 (139)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 66788888888865
No 159
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.34 E-value=72 Score=37.33 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=10.0
Q ss_pred HHhHHHHHHHHHHHHhHHHHHH
Q 004337 152 HENTQLRTENEKLRADNMRYRE 173 (760)
Q Consensus 152 ~e~~~l~~ene~L~~en~~l~e 173 (760)
.+.+.+.++|++|++||++|++
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 160
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=37.31 E-value=20 Score=32.68 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=24.5
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004337 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
..++-++.||..||++|.|-.+..+|.
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~ 28 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWD 28 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhc
Confidence 357778999999999999999999997
No 161
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=37.11 E-value=1.7e+02 Score=26.69 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=27.6
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccch
Q 004337 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 142 (760)
Q Consensus 93 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRR 142 (760)
.+..|+.+++..|+.... .+.+|++..+++-+++...
T Consensus 35 g~R~y~~~di~~l~~i~~-------------lr~~g~~l~~i~~~~~~~~ 71 (103)
T cd01106 35 GYRLYTEEDLERLQQILF-------------LKELGFSLKEIKELLKDPS 71 (103)
T ss_pred CceeeCHHHHHHHHHHHH-------------HHHcCCCHHHHHHHHHcCc
Confidence 455799999999966432 4567888888888887664
No 162
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.70 E-value=62 Score=33.88 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=26.1
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 004337 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~ 211 (760)
.+....|+++|++|+.+...++.. .+.|+.||..+++...
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~---------------------~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKK---------------------VDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 344455777777777777777663 3556777777777654
No 163
>PRK00118 putative DNA-binding protein; Validated
Probab=36.21 E-value=1.3e+02 Score=28.34 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
.+++.|...+...|... ..-.++|+.+|+++..|+.|...-|.+.|+....
T Consensus 17 ~L~ekqRevl~L~y~eg-----~S~~EIAe~lGIS~~TV~r~L~RArkkLr~~~~~ 67 (104)
T PRK00118 17 LLTEKQRNYMELYYLDD-----YSLGEIAEEFNVSRQAVYDNIKRTEKLLEDYEEK 67 (104)
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777776666543 2456799999999999999988766666654433
No 164
>PF15392 Joubert: Joubert syndrome-associated
Probab=36.12 E-value=2.7e+02 Score=31.09 Aligned_cols=34 Identities=24% Similarity=0.115 Sum_probs=20.2
Q ss_pred CCcceeeecceEEEe--chhhHHHHhcCh-hhHhhhh
Q 004337 331 GFKCEASRETAVVIM--NHISLVEILMDV-NQWSTVF 364 (760)
Q Consensus 331 g~~~EAsR~~g~V~~--~~~~LVe~lmD~-~~W~~~F 364 (760)
++.+|--|+--||.= =|.++=.||.|. ..-..+|
T Consensus 240 ~~~~e~eRe~~vvSpWt~P~eI~~iL~~s~~sllqd~ 276 (329)
T PF15392_consen 240 QVCIEYEREETVVSPWTLPSEIHRILHDSHSSLLQDL 276 (329)
T ss_pred cchhhhhccccccCCCcCcHHHHHHHhcCcchhhccC
Confidence 455666777666642 366677777776 3444444
No 165
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.96 E-value=34 Score=34.65 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=0.8
Q ss_pred chhhhHHHHHHHHHHH
Q 004337 195 DEHHLRLENARLREEI 210 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el 210 (760)
+.|+|+.|...||+|+
T Consensus 32 ~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 32 EVQRLKDELRDLKQEL 47 (166)
T ss_dssp CH--------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555555
No 166
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=35.88 E-value=59 Score=32.13 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 95 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
..+|+.|.+.|+..++ . ....++|+.||++...|+.|-++.+.+.|+
T Consensus 5 ~~Lt~rqreVL~lr~~-G-----lTq~EIAe~LGiS~~tVs~ie~ra~kkLr~ 51 (141)
T PRK03975 5 SFLTERQIEVLRLRER-G-----LTQQEIADILGTSRANVSSIEKRARENIEK 51 (141)
T ss_pred cCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5689999999988432 2 345689999999999999998765555444
No 167
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=35.74 E-value=1.5e+02 Score=28.17 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=42.7
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchh---hHHHHHHHHHhHHHHHHHHHHHHhH
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT---QMKTQHERHENTQLRTENEKLRADN 168 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRa---K~Kr~~~r~e~~~l~~ene~L~~en 168 (760)
..+..|+.+++..|+ .....+.+|++-.+|+-++..... ...+.......+.++++.+.|+...
T Consensus 34 ~gyR~Y~~~~l~~l~-------------~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~ 100 (126)
T cd04783 34 GGYRRYPEETVTRLR-------------FIKRAQELGFTLDEIAELLELDDGTDCSEARELAEQKLAEVDEKIADLQRMR 100 (126)
T ss_pred CCCeecCHHHHHHHH-------------HHHHHHHcCCCHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456779999999984 344578889999999988876542 1122222333444555555555544
Q ss_pred HHHHHH
Q 004337 169 MRYREA 174 (760)
Q Consensus 169 ~~l~ea 174 (760)
..+...
T Consensus 101 ~~l~~~ 106 (126)
T cd04783 101 ASLQEL 106 (126)
T ss_pred HHHHHH
Confidence 444443
No 168
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=35.65 E-value=69 Score=21.40 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=26.9
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhccc
Q 004337 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWF 138 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWF 138 (760)
.++.++...+...|.... ...++|+.+|++...|..|.
T Consensus 5 ~~~~~~~~~i~~~~~~~~-----s~~~ia~~~~is~~tv~~~~ 42 (42)
T cd00569 5 KLTPEQIEEARRLLAAGE-----SVAEIARRLGVSRSTLYRYL 42 (42)
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCCCHHHHHHhC
Confidence 366777776766675332 45678999999998888773
No 169
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=35.60 E-value=2.7e+02 Score=26.38 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=41.9
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchh---hHHHHHHHHHhHHHHHHHHHHHHhH
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT---QMKTQHERHENTQLRTENEKLRADN 168 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRa---K~Kr~~~r~e~~~l~~ene~L~~en 168 (760)
..+..|+.+++..|+ .....+.+|++-.+|+..+..... ...+..-++....++++.+.|....
T Consensus 33 ~g~R~Y~~~~l~~l~-------------~I~~l~~~G~sl~eI~~~l~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~ 99 (124)
T TIGR02051 33 GGYRRYPEETVKRLR-------------FIKRAQELGFSLEEIGGLLGLVDGTHCREMYELASRKLKSVQAKMADLLRIE 99 (124)
T ss_pred CCCEeECHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456679999999883 334468889988888888865432 1122223334445555555555555
Q ss_pred HHHHH
Q 004337 169 MRYRE 173 (760)
Q Consensus 169 ~~l~e 173 (760)
..|.+
T Consensus 100 ~~L~~ 104 (124)
T TIGR02051 100 RLLEE 104 (124)
T ss_pred HHHHH
Confidence 55544
No 170
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=35.59 E-value=1.2e+02 Score=26.37 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 004337 199 LRLENARLREEIDRISAIAAKYV 221 (760)
Q Consensus 199 L~~EN~~Lk~el~r~~~~~~~~~ 221 (760)
|+.|...|.+ .+++..+|.+.+
T Consensus 50 L~~ei~~l~~-~~rIe~~Ar~~l 71 (85)
T TIGR02209 50 LQLEVAELSR-HERIEKIAKKQL 71 (85)
T ss_pred HHHHHHHHcC-HHHHHHHHHHhc
Confidence 4444445444 445666666654
No 171
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=35.31 E-value=16 Score=33.50 Aligned_cols=20 Identities=30% Similarity=0.703 Sum_probs=17.5
Q ss_pred HHHHHHhCCCchhhhccccc
Q 004337 121 KELSRELGLEPLQVKFWFQN 140 (760)
Q Consensus 121 ~~LA~~LgL~~rQVkvWFQN 140 (760)
.++|+.+|++++.++.|-++
T Consensus 4 ~EvA~~~gVs~~tLR~ye~~ 23 (99)
T cd04765 4 GEVAEILGLPPHVLRYWETE 23 (99)
T ss_pred HHHHHHHCcCHHHHHHHHHH
Confidence 47899999999999999654
No 172
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=35.06 E-value=2.9e+02 Score=25.89 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=43.7
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchh-hHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT-QMKTQHERHENTQLRTENEKLRADNMR 170 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRa-K~Kr~~~r~e~~~l~~ene~L~~en~~ 170 (760)
..+..|+.+++..|+. ....+.+|++-.+|+..+.+... +..+..-.+..+.+.++.+.|......
T Consensus 33 ~gyR~Y~~~~l~~l~~-------------I~~lr~~G~~L~eI~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 99 (120)
T cd04781 33 GLRRQYDPQVLDRLAL-------------IALGRAAGFSLDEIQAMLSHDGKPPIDRQLLKAKAAELDQQIQRLQAMREL 99 (120)
T ss_pred CCceecCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999843 35577888888888888877532 222233344445555566666555555
Q ss_pred HHH
Q 004337 171 YRE 173 (760)
Q Consensus 171 l~e 173 (760)
+..
T Consensus 100 L~~ 102 (120)
T cd04781 100 LRH 102 (120)
T ss_pred HHH
Confidence 544
No 173
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.31 E-value=51 Score=30.77 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=20.0
Q ss_pred ccccchhhHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 004337 137 WFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYRE 173 (760)
Q Consensus 137 WFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~e 173 (760)
|+..+.-+.+....+++++.++++|+.|+.|...|+.
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344444444455555566666666666666655543
No 174
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=34.19 E-value=1.9e+02 Score=28.39 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 004337 197 HHLRLENARLREEIDRISAIA 217 (760)
Q Consensus 197 ~~L~~EN~~Lk~el~r~~~~~ 217 (760)
.+++.|..-+|..++++...+
T Consensus 98 s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 98 SRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 447788899999999887644
No 175
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=33.90 E-value=30 Score=31.60 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=24.3
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004337 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
..+.-+++||+.||++|.|..+..+|.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~ 30 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH 30 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc
Confidence 356778999999999999999999997
No 176
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=33.47 E-value=1.8e+02 Score=26.16 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=15.2
Q ss_pred chhhhHHHHHHHHHHHHHHHH
Q 004337 195 DEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el~r~~~ 215 (760)
+..+|+.||..|++-+.-+-+
T Consensus 45 E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 45 ENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 557788888888887766543
No 177
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=33.40 E-value=1e+02 Score=27.17 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=39.0
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 004337 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAI 216 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 216 (760)
......|+.||=.|+-...-|.+.+. -.+|....++..++-.|+.|+..|+.|+++....
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~------~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~ 65 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ------KLGPESIEELLKENIELKVEVESLKRELQEKKKL 65 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH------hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777666666667664 2234444556667777888888888888766553
No 178
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.83 E-value=57 Score=36.48 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=43.5
Q ss_pred ccccchhhHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 004337 137 WFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAI 216 (760)
Q Consensus 137 WFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 216 (760)
||=-=|-|+|. .+....+.|+....|+.+.+.-|++- |. ..++.+.|.++|+.+|.+|+.||-++..+
T Consensus 54 wff~i~~re~q-lk~aa~~llq~kirk~~e~~eglr~i-----~e------s~~e~q~e~~qL~~qnqkL~nqL~~~~~v 121 (401)
T PF06785_consen 54 WFFAIGRREKQ-LKTAAGQLLQTKIRKITEKDEGLRKI-----RE------SVEERQQESEQLQSQNQKLKNQLFHVREV 121 (401)
T ss_pred HHHHhhHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHH-----HH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66444444432 23445566666677777666665541 10 11445567778888888888888777775
Q ss_pred Hhhhc
Q 004337 217 AAKYV 221 (760)
Q Consensus 217 ~~~~~ 221 (760)
..|.-
T Consensus 122 f~k~k 126 (401)
T PF06785_consen 122 FMKTK 126 (401)
T ss_pred HHHhc
Confidence 55443
No 179
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=32.82 E-value=26 Score=33.13 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=25.5
Q ss_pred EEEEeeccCChhhHhhhhcccCccchh
Q 004337 582 AATSFWLPVPPKRVFDFLRDENTRSEW 608 (760)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eW 608 (760)
|.+++.++.||++||+.|-|+.+-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 180
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=32.61 E-value=19 Score=34.30 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCC
Q 004337 154 NTQLRTENEKLRADNMRYREALSNASCPNCGG 185 (760)
Q Consensus 154 ~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g 185 (760)
|++++.++..|+.-...|...++...|..|-.
T Consensus 44 nqqLreQqk~L~e~i~~LE~RLRaGlCDRC~V 75 (120)
T PF10482_consen 44 NQQLREQQKTLHENIKVLENRLRAGLCDRCTV 75 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 56677777777777777888888899999974
No 181
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.56 E-value=81 Score=33.73 Aligned_cols=48 Identities=31% Similarity=0.324 Sum_probs=27.6
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 004337 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDR 212 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r 212 (760)
.++++.|+.||+.|++.|..|.... .++..+.+-|+.|.+.||++.+.
T Consensus 103 ~een~~L~~en~~Lr~~n~~L~~~n--------------~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 103 TEENEILQNENDSLRAINESLLAKN--------------HELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445555555555555555544433 22333446688899999988653
No 182
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=32.28 E-value=33 Score=32.05 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=24.1
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004337 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
..+.-++.||++||++|.|..+..+|.
T Consensus 3 ~~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 3 SVSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEEeCCHHHHHHHHhCccccceeC
Confidence 356667999999999999999999997
No 183
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=32.23 E-value=32 Score=31.64 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=26.3
Q ss_pred EEEEEeeccCChhhHhhhhcccCccchhhh
Q 004337 581 SAATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (760)
Q Consensus 581 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (760)
+...++-++.||..||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345678899999999999999999999983
No 184
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=32.11 E-value=30 Score=31.86 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=25.5
Q ss_pred EEEeeccCChhhHhhhhcccCccchhhh
Q 004337 583 ATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (760)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (760)
..++-++.||+.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999984
No 185
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=31.71 E-value=22 Score=32.89 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=24.5
Q ss_pred EEeeccCChhhHhhhhcccCccchhhh
Q 004337 584 TSFWLPVPPKRVFDFLRDENTRSEWDI 610 (760)
Q Consensus 584 tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (760)
.++-++.||+.||+||.|.....+|.-
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 567789999999999999999999983
No 186
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.65 E-value=28 Score=32.55 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=25.6
Q ss_pred EEEeeccCChhhHhhhhcccCccchhhh
Q 004337 583 ATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (760)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (760)
.+++.++.||..||+.|.|-.+..+|.-
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p 29 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIP 29 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCc
Confidence 4689999999999999999999999983
No 187
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=31.03 E-value=61 Score=26.79 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHhcCCC--CCHHHHHHHHHHhCCCchhh
Q 004337 97 HTQHQIQEMEAFFKECPH--PDDKQRKELSRELGLEPLQV 134 (760)
Q Consensus 97 fT~~Ql~~LE~~F~~~~~--Ps~~~R~~LA~~LgL~~rQV 134 (760)
+|+.|.+.|...|+..-| |-...-.+||++||+++.-+
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st~ 40 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKSTV 40 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHHH
Confidence 588999999999987643 55666789999999998654
No 188
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=30.45 E-value=44 Score=27.22 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 119 QRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 119 ~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
...+||+.+|+++.++..|+.++..+..-..-.
T Consensus 12 t~~~La~~~gis~~tl~~~~~~~~~~~~~~~l~ 44 (63)
T PF13443_consen 12 TQKDLARKTGISRSTLSRILNGKPSNPSLDTLE 44 (63)
T ss_dssp -HHHHHHHHT--HHHHHHHHTTT-----HHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHhcccccccHHHHH
Confidence 456899999999999999999876555544333
No 189
>PHA03162 hypothetical protein; Provisional
Probab=30.14 E-value=21 Score=34.73 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=21.7
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHH
Q 004337 187 TAIGEMSFDEHHLRLENARLREEIDR 212 (760)
Q Consensus 187 ~~~~~~~~e~~~L~~EN~~Lk~el~r 212 (760)
+..++|..+.++|++||..||+++.+
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35578888999999999999999754
No 190
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=29.54 E-value=97 Score=32.21 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=35.7
Q ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 004337 139 QNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEI 210 (760)
Q Consensus 139 QNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el 210 (760)
+||+--...++.+++++.|-++.+.|..+|..+.... +.+....++|-.+++-|+.++
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~--------------~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAER--------------DGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh--------------hhHHHHHHHHHHhhHHHHHHH
Confidence 3455555555556666666666666666666666544 344455666766777777666
No 191
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.34 E-value=1.9e+02 Score=29.36 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 004337 196 EHHLRLENARLREEIDRISA 215 (760)
Q Consensus 196 ~~~L~~EN~~Lk~el~r~~~ 215 (760)
.+.|..++..++++++-+-.
T Consensus 127 ~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 127 LEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666554433
No 192
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=29.17 E-value=63 Score=28.78 Aligned_cols=15 Identities=53% Similarity=0.895 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHH
Q 004337 199 LRLENARLREEIDRI 213 (760)
Q Consensus 199 L~~EN~~Lk~el~r~ 213 (760)
|..||++||+|++++
T Consensus 5 i~eEn~~Lk~eiqkl 19 (76)
T PF07334_consen 5 IQEENARLKEEIQKL 19 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555544
No 193
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=28.83 E-value=35 Score=29.94 Aligned_cols=26 Identities=38% Similarity=0.837 Sum_probs=23.4
Q ss_pred EEeeccCChhhHhhhhcccCccchhh
Q 004337 584 TSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 584 tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
.++-++.||+.||++|.|..+..+|.
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~ 28 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWS 28 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhC
Confidence 46678999999999999999999996
No 194
>PHA03155 hypothetical protein; Provisional
Probab=28.82 E-value=21 Score=33.97 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=20.6
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHH
Q 004337 188 AIGEMSFDEHHLRLENARLREEIDR 212 (760)
Q Consensus 188 ~~~~~~~e~~~L~~EN~~Lk~el~r 212 (760)
..+++..+.++|+.||..||+.+.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3467888999999999999998753
No 195
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=28.74 E-value=30 Score=31.72 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=24.4
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004337 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
..|+.++.||+.||++|.|..+-.+|.
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~ 29 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWF 29 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhh
Confidence 357778999999999999999999996
No 196
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=28.62 E-value=4.5e+02 Score=23.84 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=32.4
Q ss_pred eEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004337 448 LIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (760)
Q Consensus 448 lIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ce 500 (760)
-+++.++ .++|+|..+....... -+.+..+..-|..+.+..|+.+||
T Consensus 92 ~~~~~~~-~T~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 92 TLEETGG-GTRLTLTHSGFPEEDA-----EQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred EEEECCC-CEEEEEEEEccChHhH-----HHHHHhCHhhHHHHHHHHHHHHhh
Confidence 3677875 5999998776543211 334556667788888888988886
No 197
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.37 E-value=1.3e+02 Score=37.37 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=46.0
Q ss_pred CCchhhhcccccchhhHHHHHHHH---------HhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhh
Q 004337 129 LEPLQVKFWFQNKRTQMKTQHERH---------ENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHL 199 (760)
Q Consensus 129 L~~rQVkvWFQNRRaK~Kr~~~r~---------e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L 199 (760)
|+..+-.-|=++||...-.++.++ ...+|+.|.+.|......|...+...-|-.-......+.+..+.+..
T Consensus 405 lEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~ 484 (1118)
T KOG1029|consen 405 LEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELM 484 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHH
Confidence 333334568888887766554332 23334444444444444444444333333322223334566666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004337 200 RLENARLREEIDRISAIA 217 (760)
Q Consensus 200 ~~EN~~Lk~el~r~~~~~ 217 (760)
+.|...|+++|+.....+
T Consensus 485 isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777776666554433
No 198
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=28.19 E-value=46 Score=33.95 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 004337 178 ASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (760)
Q Consensus 178 ~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~ 211 (760)
-.||.||++-..-+-+...+.|+....+|++++.
T Consensus 137 F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 137 FRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 4578888776654444555555555555555544
No 199
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=28.15 E-value=98 Score=33.80 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 004337 157 LRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIA 217 (760)
Q Consensus 157 l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~~ 217 (760)
.-.....+.+||++|++++ .+ -.+++...+..|++|.+|+..++
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~--------------~~---l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQEL--------------LK---KNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677899999999865 11 12455555556888888888754
No 200
>PHA00728 hypothetical protein
Probab=28.10 E-value=54 Score=31.56 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=21.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhh
Q 004337 195 DEHHLRLENARLREEIDRISAIAAK 219 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el~r~~~~~~~ 219 (760)
+.+||+.||..||+.|+++.++.+.
T Consensus 6 eveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 6 EVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 6789999999999999999887654
No 201
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=28.05 E-value=64 Score=38.13 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=17.5
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHh
Q 004337 153 ENTQLRTENEKLRADNMRYREAL 175 (760)
Q Consensus 153 e~~~l~~ene~L~~en~~l~ea~ 175 (760)
..+++.+|||.|+.||..|+..+
T Consensus 310 rLq~ll~Ene~Lk~ENatLk~qL 332 (655)
T KOG4343|consen 310 RLQALLSENEQLKKENATLKRQL 332 (655)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Confidence 34667788888888888888765
No 202
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.49 E-value=1.1e+02 Score=28.69 Aligned_cols=31 Identities=26% Similarity=0.575 Sum_probs=26.6
Q ss_pred EEEEeeccCChhhHhhhhcccCccchhhhcc
Q 004337 582 AATSFWLPVPPKRVFDFLRDENTRSEWDILS 612 (760)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eWdils 612 (760)
...|+-++.||++||+++.|.....+|.-..
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 3567778999999999999999999998533
No 203
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=27.45 E-value=1.4e+02 Score=34.11 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=30.1
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 004337 150 ERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 150 ~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 215 (760)
.+.....++.+++.|..++..+... ..+++.|..+||+|++++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 20 LYEKLKELEKELEFLDIQEEYIKEE---------------------QKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhC
Confidence 3344445556677777776666653 35677888888888888765
No 204
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.10 E-value=1e+02 Score=33.03 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHH---HHHHHHHHHHHHH
Q 004337 154 NTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENA---RLREEIDRISAIA 217 (760)
Q Consensus 154 ~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~---~Lk~el~r~~~~~ 217 (760)
.-..-..+.++++||++|++++ .+|+.++. .|++|.+++..++
T Consensus 64 ~~~~~~~~~~l~~en~~L~~e~---------------------~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 64 VFESLASLFDLREENEELKKEL---------------------LELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556778888888888854 45555555 6677777777743
No 205
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.88 E-value=4e+02 Score=24.52 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=40.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 004337 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYR 172 (760)
Q Consensus 93 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~ 172 (760)
.+..|+.+++..|.. ....+.+|++-.+++-.+...........-+...+.+.++...+....+.+.
T Consensus 36 gyR~Y~~~~i~~l~~-------------I~~lr~~G~sl~~i~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 102 (108)
T cd01107 36 GYRYYSAEQLERLNR-------------IKYLRDLGFPLEEIKEILDADNDDELRKLLREKLAELEAEIEELQRILRLLE 102 (108)
T ss_pred CccccCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466799999988853 2335678888888888887766533333333444444444444444444433
No 206
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=26.60 E-value=8.7e+02 Score=26.91 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHh
Q 004337 142 RTQMKTQHERHENTQLRTENEKLRADNMRYREAL 175 (760)
Q Consensus 142 RaK~Kr~~~r~e~~~l~~ene~L~~en~~l~ea~ 175 (760)
|+|-|- ..........|.+.|+.+..+++|.+
T Consensus 74 kakLke--s~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 74 KAKLKE--SENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444443 33344456778899999999999877
No 207
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=26.49 E-value=5.1e+02 Score=24.19 Aligned_cols=68 Identities=7% Similarity=0.095 Sum_probs=39.6
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchh-----hHHHHHHHHHhHHHHHHHHHHHH
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT-----QMKTQHERHENTQLRTENEKLRA 166 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRa-----K~Kr~~~r~e~~~l~~ene~L~~ 166 (760)
..+..|+.+++..|+. ....+.+|++-.+|+..+.+... ......-++..+.+.++.+.|..
T Consensus 34 ~gyR~Y~~~~i~~l~~-------------I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~ 100 (123)
T cd04770 34 NGYRLYGEADLARLRF-------------IRRAQALGFSLAEIRELLSLRDDGAAPCAEVRALLEEKLAEVEAKIAELQA 100 (123)
T ss_pred CCCccCCHHHHHHHHH-------------HHHHHHCCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999943 33457778888888877765543 11222223334444555555544
Q ss_pred hHHHHH
Q 004337 167 DNMRYR 172 (760)
Q Consensus 167 en~~l~ 172 (760)
....+.
T Consensus 101 ~~~~l~ 106 (123)
T cd04770 101 LRAELA 106 (123)
T ss_pred HHHHHH
Confidence 444443
No 208
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.02 E-value=2e+02 Score=24.07 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=10.4
Q ss_pred chhhhHHHHHHHHHHHHHHH
Q 004337 195 DEHHLRLENARLREEIDRIS 214 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el~r~~ 214 (760)
+...|+.++..|+++++.+.
T Consensus 41 en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 41 ENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555443
No 209
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=25.94 E-value=3.6e+02 Score=25.79 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=27.1
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccc
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNK 141 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNR 141 (760)
..++.|+.+++..|. .....+.+|++-.+|+-++...
T Consensus 34 ~gyR~Y~~~~~~~l~-------------~I~~lr~~G~sL~eI~~~l~~~ 70 (133)
T cd04787 34 NGYRLYSEKDLSRLR-------------FILSARQLGFSLKDIKEILSHA 70 (133)
T ss_pred CCeeeCCHHHHHHHH-------------HHHHHHHcCCCHHHHHHHHhhh
Confidence 345689999999983 3344677888888888888654
No 210
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=25.69 E-value=4e+02 Score=24.34 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=38.4
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRY 171 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l 171 (760)
..+..|+.+++..|+.. ...+++|++-.+++..+..... +..-....+.+.++.+.|+.....+
T Consensus 34 ~g~R~Y~~~dl~~l~~I-------------~~l~~~G~~l~ei~~~~~~~~~---~~~l~~~~~~l~~~i~~l~~~~~~l 97 (102)
T cd04775 34 ANYRLYSEADLSRLEKI-------------VFLQAGGLPLEEIAGCLAQPHV---QAILEERLQSLNREIQRLRQQQQVL 97 (102)
T ss_pred CCCeeeCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHcCCcH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567999999988542 2247778888888877765431 1222333344555555555444444
Q ss_pred HH
Q 004337 172 RE 173 (760)
Q Consensus 172 ~e 173 (760)
.+
T Consensus 98 ~~ 99 (102)
T cd04775 98 AA 99 (102)
T ss_pred HH
Confidence 33
No 211
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=25.55 E-value=49 Score=25.84 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=20.2
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhccc
Q 004337 94 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWF 138 (760)
Q Consensus 94 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWF 138 (760)
++.+|.+|...++..++.. ....++|+.+|.++.-|..+.
T Consensus 2 ~~~Lt~~eR~~I~~l~~~G-----~s~~~IA~~lg~s~sTV~rel 41 (44)
T PF13936_consen 2 YKHLTPEERNQIEALLEQG-----MSIREIAKRLGRSRSTVSREL 41 (44)
T ss_dssp ----------HHHHHHCS--------HHHHHHHTT--HHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHcC-----CCHHHHHHHHCcCcHHHHHHH
Confidence 4679999999999887644 345679999999998887654
No 212
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=25.41 E-value=25 Score=33.67 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=19.0
Q ss_pred CCCCcchhhhHHHHHHHHHHHHH
Q 004337 190 GEMSFDEHHLRLENARLREEIDR 212 (760)
Q Consensus 190 ~~~~~e~~~L~~EN~~Lk~el~r 212 (760)
++|..+.++|++||..||+++.+
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566789999999999999775
No 213
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=24.81 E-value=24 Score=37.13 Aligned_cols=32 Identities=44% Similarity=0.526 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 004337 154 NTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARL 206 (760)
Q Consensus 154 ~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~L 206 (760)
...|+.-.+-|.+||.+|++ +++||+.||++|
T Consensus 131 I~dLrrlVe~L~aeNErLr~---------------------EnkqL~ae~arL 162 (243)
T PF08961_consen 131 IADLRRLVEFLLAENERLRR---------------------ENKQLKAENARL 162 (243)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Confidence 44455556666666666655 557777777777
No 214
>PRK03918 chromosome segregation protein; Provisional
Probab=24.70 E-value=2.2e+02 Score=35.48 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCC
Q 004337 177 NASCPNCGGPTAI 189 (760)
Q Consensus 177 ~~~C~~C~g~~~~ 189 (760)
.+.||.|+.+...
T Consensus 435 ~~~Cp~c~~~L~~ 447 (880)
T PRK03918 435 KGKCPVCGRELTE 447 (880)
T ss_pred CCCCCCCCCcCCc
Confidence 4689999987643
No 215
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.52 E-value=57 Score=29.71 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=23.7
Q ss_pred EEeeccCChhhHhhhhcccCccchhh
Q 004337 584 TSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 584 tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
.+.-++.||+.||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~ 29 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWN 29 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccC
Confidence 46668999999999999999999998
No 216
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=24.30 E-value=88 Score=24.77 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhccccc
Q 004337 97 HTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQN 140 (760)
Q Consensus 97 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQN 140 (760)
+++.+...+...|-.. ..-.++|+.+|+++..|+.|.+.
T Consensus 11 L~~~~r~i~~l~~~~g-----~s~~eIa~~l~~s~~~v~~~l~r 49 (54)
T PF08281_consen 11 LPERQREIFLLRYFQG-----MSYAEIAEILGISESTVKRRLRR 49 (54)
T ss_dssp S-HHHHHHHHHHHTS--------HHHHHHHCTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-----cCHHHHHHHHCcCHHHHHHHHHH
Confidence 5667777776665443 45778999999999999999864
No 217
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=24.05 E-value=1e+02 Score=26.23 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHH
Q 004337 197 HHLRLENARLREE 209 (760)
Q Consensus 197 ~~L~~EN~~Lk~e 209 (760)
.+|..||..||+.
T Consensus 31 ~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 31 SQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5577777777654
No 218
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.98 E-value=5.9e+02 Score=24.12 Aligned_cols=71 Identities=11% Similarity=0.177 Sum_probs=40.9
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchh-----hHHHHHHHHHhHHHHHHHHHHHH
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT-----QMKTQHERHENTQLRTENEKLRA 166 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRa-----K~Kr~~~r~e~~~l~~ene~L~~ 166 (760)
..+..|+.+++..|... ...+.+|++-.+|+-++.-.+. ...+..-.+..+.+.++.+.|..
T Consensus 34 ~g~R~Y~~~~l~~l~~I-------------~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (126)
T cd04785 34 GGYRLYGAAHVERLRFI-------------RRARDLGFSLEEIRALLALSDRPDRSCAEADAIARAHLADVRARIADLRR 100 (126)
T ss_pred CCccccCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667999999998542 3356778877777777753321 11122233444455555555555
Q ss_pred hHHHHHHHh
Q 004337 167 DNMRYREAL 175 (760)
Q Consensus 167 en~~l~ea~ 175 (760)
....+....
T Consensus 101 ~~~~L~~~~ 109 (126)
T cd04785 101 LEAELKRMV 109 (126)
T ss_pred HHHHHHHHH
Confidence 555555433
No 219
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=23.87 E-value=21 Score=42.37 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=30.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhC-------CCchhhhcccccchhhHHHHH
Q 004337 106 EAFFKECPHPDDKQRKELSRELG-------LEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 106 E~~F~~~~~Ps~~~R~~LA~~Lg-------L~~rQVkvWFQNRRaK~Kr~~ 149 (760)
+..|.+++++......+--+++. .+.+.|++||.|||.++|+.+
T Consensus 708 ~~w~~k~~s~s~~~v~eYkee~~~~~~~e~~~~kn~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 708 HHWKLKTRSGSWVDVAEYKEEELLMPYEEKFESKNVQFWFKVRREEEKRLK 758 (769)
T ss_pred hhheecccCchhHHHHHhhHHhhcchhhhhhhhcchHHHHHHHHHHHhhhh
Confidence 45566777777655554444443 356789999999999999854
No 220
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.84 E-value=6.9e+02 Score=31.04 Aligned_cols=7 Identities=29% Similarity=0.548 Sum_probs=2.8
Q ss_pred CCCCccC
Q 004337 399 PSPLVPT 405 (760)
Q Consensus 399 ~SPLvp~ 405 (760)
++|..|.
T Consensus 668 ~~~~~~~ 674 (697)
T PF09726_consen 668 ITPPTPH 674 (697)
T ss_pred CCCCCcc
Confidence 3444443
No 221
>PF09607 BrkDBD: Brinker DNA-binding domain; InterPro: IPR018586 This DNA-binding domain is the first approx. 100 residues of the N-terminal end of Brinker. The structure of this domain in complex with DNA consists of four alpha-helices that contain a helix-turn-helix DNA recognition motif specific for GC-rich DNA. The Brinker nuclear repressor is a major element of the Drosophila Decapentaplegic morphogen signalling pathway []. ; PDB: 2GLO_A.
Probab=23.82 E-value=94 Score=26.37 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=22.5
Q ss_pred CCCCChHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhccc
Q 004337 94 YHRHTQHQ-IQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWF 138 (760)
Q Consensus 94 RtrfT~~Q-l~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWF 138 (760)
|..||... +.+++. |.....--..+|.. |+++|+++++|+-|-
T Consensus 3 rrsy~~~FKL~Vv~~-a~~~~nc~~~~RAa-arkf~V~r~~Vr~W~ 46 (58)
T PF09607_consen 3 RRSYTAEFKLKVVEY-AEKDNNCKGNQRAA-ARKFNVSRRQVRKWR 46 (58)
T ss_dssp -----HHHHHHHHHH-HHH-TTTTT-HHHH-HHHTTS-HHHHHHHH
T ss_pred ccccChHHHHHHHHH-HHHccchhhhHHHH-HHHhCccHHHHHHHH
Confidence 34566644 444444 44443333444544 999999999999994
No 222
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=23.78 E-value=1.4e+02 Score=28.09 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHH
Q 004337 197 HHLRLENARLREE 209 (760)
Q Consensus 197 ~~L~~EN~~Lk~e 209 (760)
.+|++||+.||+-
T Consensus 88 ~~L~~E~diLKKa 100 (121)
T PRK09413 88 GKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 223
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=23.48 E-value=2.3e+02 Score=29.98 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=30.7
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 004337 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIA 217 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~~ 217 (760)
++-..+++...++++.|-..+.+. |-..|+.||.+||.|++|+..-.
T Consensus 93 ~~v~~QQ~~~f~kiRsel~S~e~s--------------------EF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 93 EKVSYQQKVDFAKIRSELVSIERS--------------------EFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777776665442 34557888888888888876643
No 224
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.19 E-value=31 Score=28.01 Aligned_cols=9 Identities=56% Similarity=1.464 Sum_probs=4.9
Q ss_pred CCCCCCCCC
Q 004337 179 SCPNCGGPT 187 (760)
Q Consensus 179 ~C~~C~g~~ 187 (760)
.||-|+.+-
T Consensus 22 ~CPlC~r~l 30 (54)
T PF04423_consen 22 CCPLCGRPL 30 (54)
T ss_dssp E-TTT--EE
T ss_pred cCCCCCCCC
Confidence 899999764
No 225
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=23.17 E-value=6.4e+02 Score=23.83 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=39.8
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccc----h-hhHHHHHHHHHhHHHHHHHHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNK----R-TQMKTQHERHENTQLRTENEKLR 165 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNR----R-aK~Kr~~~r~e~~~l~~ene~L~ 165 (760)
...+..|+.+++..|.. ...++.+|++-.+|+..|.-. + .......-.+..+.+.++.+.|.
T Consensus 33 ~~gyR~Y~~~~l~~l~~-------------I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~ 99 (127)
T TIGR02044 33 EGGYRTYTQQHLDELRL-------------ISRARQVGFSLEECKELLNLWNDPNRTSADVKARTLEKVAEIERKISELQ 99 (127)
T ss_pred CCCCeecCHHHHHHHHH-------------HHHHHHCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999998854 334677888888887776421 1 11112222333445555555555
Q ss_pred HhHHHHHHH
Q 004337 166 ADNMRYREA 174 (760)
Q Consensus 166 ~en~~l~ea 174 (760)
.....|...
T Consensus 100 ~~~~~L~~~ 108 (127)
T TIGR02044 100 SMRDQLEAL 108 (127)
T ss_pred HHHHHHHHH
Confidence 555555443
No 226
>PF14645 Chibby: Chibby family
Probab=22.61 E-value=2.2e+02 Score=27.24 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=10.6
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHH
Q 004337 150 ERHENTQLRTENEKLRADNMRYRE 173 (760)
Q Consensus 150 ~r~e~~~l~~ene~L~~en~~l~e 173 (760)
.++++++|+.||..|+-+++-|..
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlD 99 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLD 99 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 227
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=22.59 E-value=52 Score=30.93 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.4
Q ss_pred EEeeccCChhhHhhhhcccCccchhh
Q 004337 584 TSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 584 tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
.|+.++.||+.||+|+.|...-.+|.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~ 28 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLT 28 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcC
Confidence 57889999999999999988888877
No 228
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.56 E-value=5.1e+02 Score=23.92 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=27.0
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccch
Q 004337 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 142 (760)
Q Consensus 93 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRR 142 (760)
.+..|+.+++..|.. ....+++|++-.+|+..+....
T Consensus 35 gyR~Y~~~~l~~l~~-------------I~~lr~~G~sL~eI~~~l~~~~ 71 (113)
T cd01109 35 GIRDFTEEDLEWLEF-------------IKCLRNTGMSIKDIKEYAELRR 71 (113)
T ss_pred CCccCCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHHHc
Confidence 455799999998843 3346778888888888886543
No 229
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=22.47 E-value=6.8e+02 Score=23.81 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=40.1
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchh-----hHHHHHHHHHhHHHHHHHHHHHH
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT-----QMKTQHERHENTQLRTENEKLRA 166 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRa-----K~Kr~~~r~e~~~l~~ene~L~~ 166 (760)
..+..|+.+++..|.. ....+.+|++-.+|+-.+..... ...+..-+.....+.++.+.|+.
T Consensus 34 ~gyR~Y~~~~l~~l~~-------------I~~lr~lG~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (127)
T TIGR02047 34 NNYRVYTVGHVERLAF-------------IRNCRTLDMSLAEIRQLLRYQDKPEKSCSDVNALLDEHISHVRARIIKLQA 100 (127)
T ss_pred CCCCcCCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999998854 23357788888888877653221 11222233444455555555555
Q ss_pred hHHHHHH
Q 004337 167 DNMRYRE 173 (760)
Q Consensus 167 en~~l~e 173 (760)
....|..
T Consensus 101 ~~~~L~~ 107 (127)
T TIGR02047 101 LIEQLVD 107 (127)
T ss_pred HHHHHHH
Confidence 5555544
No 230
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.41 E-value=6.7e+02 Score=25.78 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=32.0
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhh
Q 004337 152 HENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKY 220 (760)
Q Consensus 152 ~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~~~~~ 220 (760)
.....++++++.++.+...+.+.+.... . + -+.+.+...+..+...|++++.++..-..+|
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~--~-~-----r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAK--K-G-----REESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-c-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555443221 0 0 1122455666677777777777766654444
No 231
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=22.32 E-value=5.6e+02 Score=24.90 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=25.1
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhccccc
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQN 140 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQN 140 (760)
..+..|+.+++..|... ...+.+|++-.+|+-.+++
T Consensus 34 ~g~R~Y~~~dl~~l~~I-------------~~lr~~G~sl~eI~~~l~~ 69 (139)
T cd01110 34 GNQRRYPRDVLRRIAFI-------------KVAQRLGLSLAEIAEALAT 69 (139)
T ss_pred CCCeEECHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHH
Confidence 34567999999988542 3356778887777777653
No 232
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=22.19 E-value=49 Score=28.11 Aligned_cols=20 Identities=20% Similarity=0.589 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCchhhhcc
Q 004337 118 KQRKELSRELGLEPLQVKFW 137 (760)
Q Consensus 118 ~~R~~LA~~LgL~~rQVkvW 137 (760)
..-.+||.+||+++.+|+.|
T Consensus 23 i~lkdIA~~Lgvs~~tIr~W 42 (60)
T PF10668_consen 23 IKLKDIAEKLGVSESTIRKW 42 (60)
T ss_pred ccHHHHHHHHCCCHHHHHHH
Confidence 34568999999999999999
No 233
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=21.96 E-value=2.4e+02 Score=25.32 Aligned_cols=50 Identities=36% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhcC
Q 004337 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVG 222 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~~~~~~g 222 (760)
+.+...+..+++++..+...+.+ +..+|+.|.+.|.. .+|+..+|.+.+|
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~---------------------e~~~L~lE~~~l~~-~~rIe~iA~~~Lg 83 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQE---------------------ENERLRLEIATLSS-PSRIERIAREKLG 83 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhC-HHHHHHHHHHcCC
No 234
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=21.94 E-value=71 Score=32.72 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 004337 178 ASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 178 ~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 215 (760)
-.||.||..-..-+-+.....|..+..+|++++++...
T Consensus 133 F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~l~~~~~ 170 (176)
T COG1675 133 FTCPKCGEDLEEYDSSEEIEELESELDELEEELERNDK 170 (176)
T ss_pred CCCCCCCchhhhccchHHHHHHHHHHHHHHHHHhcccc
Confidence 35888988776666677777788888888888776543
No 235
>PRK01156 chromosome segregation protein; Provisional
Probab=21.94 E-value=2.2e+02 Score=35.69 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhc----CCCCCCCCCCCC
Q 004337 154 NTQLRTENEKLRADNMRYREALS----NASCPNCGGPTA 188 (760)
Q Consensus 154 ~~~l~~ene~L~~en~~l~ea~~----~~~C~~C~g~~~ 188 (760)
-..++++...++.....++++.. .+.||.|+.+-.
T Consensus 425 i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~~ 463 (895)
T PRK01156 425 VSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLG 463 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcCC
Confidence 34445555555555555665433 567888887754
No 236
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=21.91 E-value=4.5e+02 Score=26.61 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=38.6
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccch
Q 004337 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 142 (760)
Q Consensus 93 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRR 142 (760)
+...+|+++++++.+.-.++ |..-.+..||+++|+++.-|.+=.+--.
T Consensus 82 k~y~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~~~~ 129 (164)
T PF12824_consen 82 KKYHLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAPAPK 129 (164)
T ss_pred ccccCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcCCCH
Confidence 34689999999999988776 5667789999999999988777664433
No 237
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.90 E-value=3.4e+02 Score=24.88 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=27.3
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccc
Q 004337 94 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNK 141 (760)
Q Consensus 94 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNR 141 (760)
+.+|+.+++..|. ....++++|++-.+|+-+|..+
T Consensus 34 ~r~Y~~~~~~~l~-------------~I~~lr~~G~sL~eI~~~l~~~ 68 (107)
T cd04777 34 QYFFDEKCQDDLE-------------FILELKGLGFSLIEIQKIFSYK 68 (107)
T ss_pred ccccCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHHhc
Confidence 3468888887774 4456889999999999999764
No 238
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=21.64 E-value=37 Score=35.85 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=38.9
Q ss_pred CCCCCCcccccCCCCCceEEEEc-cCCCCCCCCCccEEEEEEEeecc-CChhhHhhhhcccCccchhhh
Q 004337 544 ASTAHTWTTLSGTGADDVRVMTR-KSVDDPGRPPGIVLSAATSFWLP-VPPKRVFDFLRDENTRSEWDI 610 (760)
Q Consensus 544 ~s~~~~W~~l~~~~~~dvrv~~r-~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdi 610 (760)
+-.+.+|..+... .+++|... .-. .| | =...|-+ -+. ++|..|+||+-|..-|.+||.
T Consensus 25 ~~~~~~We~~~~k--~~~~i~~q~~~~--~g-~-~~Yk~~~---vfeDvtp~~~~Dv~~D~eYRkkWD~ 84 (219)
T KOG2761|consen 25 CDAGQGWELVMDK--STPSIWRQRRPK--TG-L-YEYKSRT---VFEDVTPEIVRDVQWDDEYRKKWDD 84 (219)
T ss_pred cCcccchhhhccc--CCceEEEEcccC--CC-C-EEEEEEE---EEcCCCHHHHHHHHhhhHHHHHHHH
Confidence 5677899887433 35555552 221 23 2 2344433 346 999999999999999999994
No 239
>PRK02224 chromosome segregation protein; Provisional
Probab=21.44 E-value=4e+02 Score=33.31 Aligned_cols=14 Identities=36% Similarity=0.968 Sum_probs=10.5
Q ss_pred cCCCCCCCCCCCCC
Q 004337 176 SNASCPNCGGPTAI 189 (760)
Q Consensus 176 ~~~~C~~C~g~~~~ 189 (760)
....||.|+.+...
T Consensus 450 ~~~~Cp~C~r~~~~ 463 (880)
T PRK02224 450 EAGKCPECGQPVEG 463 (880)
T ss_pred hcccCCCCCCcCCC
Confidence 46789999986543
No 240
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.36 E-value=2e+02 Score=30.53 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=12.6
Q ss_pred chhhhHHHHHHHHHHHHHHHH
Q 004337 195 DEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el~r~~~ 215 (760)
....++.|.+.|+++++.+..
T Consensus 78 ~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 78 QVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677766665544
No 241
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.19 E-value=4e+02 Score=25.19 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=25.9
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccc
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNK 141 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNR 141 (760)
..+..|+.+++..|.. ....+.+|++-.+|+-.+...
T Consensus 34 ~gyR~Y~~~~l~~l~~-------------I~~lr~~G~sL~eI~~~l~~~ 70 (127)
T cd04784 34 NNYRLYDEEHLERLLF-------------IRRCRSLDMSLDEIRTLLQLQ 70 (127)
T ss_pred CCCeecCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHhh
Confidence 4567899999988844 334667777777777776543
No 242
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.14 E-value=1.6e+02 Score=27.74 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=35.6
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhc
Q 004337 153 ENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYV 221 (760)
Q Consensus 153 e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~~~~~~ 221 (760)
....+.+....+.++...|+.. ...|..||++|+-|.++++..+.+..
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~---------------------~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQ---------------------LQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666666664 47799999999999999998877654
No 243
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=20.96 E-value=1.3e+02 Score=24.35 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=24.2
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 004337 187 TAIGEMSFDEHHLRLENARLREEIDRISAI 216 (760)
Q Consensus 187 ~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 216 (760)
+.......+.+||+.|+..|+.-+-.++..
T Consensus 4 ~v~~~~dydreqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 4 VVVAQHDYDREQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred eeecccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 344556788999999999999998888773
No 244
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=20.87 E-value=1e+02 Score=29.64 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 97 HTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 97 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
+++.|...+...|-.. ..-.++|+.+|+++..|+.....-|.+.|+..
T Consensus 107 Lp~~~r~v~~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l 154 (160)
T PRK09642 107 LPENYRDVVLAHYLEE-----KSYQEIALQEKIEVKTVEMKLYRARKWIKKHW 154 (160)
T ss_pred CCHHHHHHHHHHHHhC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5555666665544322 23458999999999999999876666666544
No 245
>COG2262 HflX GTPases [General function prediction only]
Probab=20.78 E-value=2.5e+02 Score=32.50 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCC--CCC--CCCcchhhhHHHHHHHHHHHHHHHHH
Q 004337 156 QLRTENEKLRADNMRYREALSNASCPNCGGPT--AIG--EMSFDEHHLRLENARLREEIDRISAI 216 (760)
Q Consensus 156 ~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~--~~~--~~~~e~~~L~~EN~~Lk~el~r~~~~ 216 (760)
.|+.|...|+-+..+++....... ..-||.- .+| ++..+.++++....+|++||+++...
T Consensus 116 kLQVeLAqL~Y~lpRl~~~~~~l~-~~GggiG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~ 179 (411)
T COG2262 116 KLQVELAQLRYELPRLVGSGSHLS-RLGGGIGFRGPGETQLETDRRRIRRRIAKLKRELENVEKA 179 (411)
T ss_pred hhhhhHHhhhhhhhHhHhhhhhcc-cccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777777777777665554 1222222 233 34566788999999999999987663
No 246
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.63 E-value=1.1e+02 Score=31.03 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=5.5
Q ss_pred chhhhHHHHHHHHHHHHHHHH
Q 004337 195 DEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el~r~~~ 215 (760)
|.+.|++|++|||||+..+.-
T Consensus 25 EKE~L~~~~QRLkDE~RDLKq 45 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLKQ 45 (166)
T ss_dssp HHHHHHHCH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345577777777777765543
No 247
>PRK09644 RNA polymerase sigma factor SigM; Provisional
Probab=20.54 E-value=1e+02 Score=29.86 Aligned_cols=49 Identities=14% Similarity=-0.025 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
.+++.|...+...|-.. ....++|..+|+++..|+.|.+.=|.+.|+.-
T Consensus 108 ~L~~~~r~v~~l~~~~g-----~s~~eIA~~lgis~~tv~~~l~Rar~~Lr~~l 156 (165)
T PRK09644 108 TLPVIEAQAILLCDVHE-----LTYEEAASVLDLKLNTYKSHLFRGRKRLKALL 156 (165)
T ss_pred hCCHHHHHHHHhHHHhc-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 45666666665433221 24668999999999999999876666555543
No 248
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=20.43 E-value=70 Score=29.74 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=25.5
Q ss_pred EEEeeccCChhhHhhhhcccCccchhhh
Q 004337 583 ATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (760)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (760)
..++.++.||++||+.+.|..+..+|-.
T Consensus 4 ~~~i~i~a~~e~Vw~~~td~~~~~~W~~ 31 (145)
T cd08898 4 ERTILIDAPRERVWRALTDPEHFGQWFG 31 (145)
T ss_pred EEEEEecCCHHHHHHHhcChhhhhhccc
Confidence 4678899999999999999999999974
No 249
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.42 E-value=2.4e+02 Score=33.79 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=19.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhh
Q 004337 194 FDEHHLRLENARLREEIDRISAIAAK 219 (760)
Q Consensus 194 ~e~~~L~~EN~~Lk~el~r~~~~~~~ 219 (760)
-++.+|+.||.+|..+|.++......
T Consensus 169 ~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 169 DELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 36678888899999888888764433
Done!