Query 004337
Match_columns 760
No_of_seqs 414 out of 1815
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 21:59:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 1.8E-19 6.3E-24 183.4 19.2 200 274-502 19-229 (231)
2 2kt0_A Nanog, homeobox protein 99.7 1.3E-17 4.6E-22 145.5 6.4 63 87-149 19-81 (84)
3 3a01_A Homeodomain-containing 99.7 1.3E-17 4.3E-22 148.9 6.1 75 88-162 15-89 (93)
4 2da3_A Alpha-fetoprotein enhan 99.7 1.6E-17 5.6E-22 143.4 6.3 62 88-149 15-76 (80)
5 2dmt_A Homeobox protein BARH-l 99.7 2.2E-17 7.6E-22 143.1 7.1 63 87-149 14-76 (80)
6 1nk2_P Homeobox protein VND; h 99.7 5.2E-17 1.8E-21 139.8 6.9 65 88-152 7-71 (77)
7 1wh5_A ZF-HD homeobox family p 99.7 3.9E-17 1.3E-21 142.0 5.7 60 88-147 15-78 (80)
8 2vi6_A Homeobox protein nanog; 99.7 2.7E-17 9.4E-22 135.7 4.1 61 89-149 2-62 (62)
9 2cue_A Paired box protein PAX6 99.7 9.4E-17 3.2E-21 139.2 7.4 62 90-151 7-68 (80)
10 1fjl_A Paired protein; DNA-bin 99.7 6.6E-17 2.2E-21 140.4 6.4 64 87-150 15-78 (81)
11 2dmq_A LIM/homeobox protein LH 99.7 6.3E-17 2.2E-21 140.0 5.5 63 90-152 7-69 (80)
12 2h1k_A IPF-1, pancreatic and d 99.7 6.8E-17 2.3E-21 133.8 5.4 59 90-148 3-61 (63)
13 1wh7_A ZF-HD homeobox family p 99.6 8.2E-17 2.8E-21 140.1 5.7 59 88-147 15-78 (80)
14 2cra_A Homeobox protein HOX-B1 99.6 7E-17 2.4E-21 136.4 4.9 60 90-149 7-66 (70)
15 2hdd_A Protein (engrailed home 99.6 7.6E-17 2.6E-21 132.6 4.9 58 90-147 3-60 (61)
16 2dms_A Homeobox protein OTX2; 99.6 6.1E-17 2.1E-21 140.3 4.3 62 89-150 6-67 (80)
17 1zq3_P PRD-4, homeotic bicoid 99.6 1E-16 3.5E-21 134.8 5.4 62 90-151 2-63 (68)
18 1puf_A HOX-1.7, homeobox prote 99.6 2.8E-16 9.7E-21 135.2 8.1 63 89-151 12-74 (77)
19 2dmu_A Homeobox protein goosec 99.6 1.5E-16 5.2E-21 134.3 6.3 60 90-149 7-66 (70)
20 1ig7_A Homeotic protein MSX-1; 99.6 1.4E-16 4.7E-21 129.6 5.7 57 91-147 1-57 (58)
21 2e1o_A Homeobox protein PRH; D 99.6 1.7E-16 5.7E-21 134.1 6.1 60 90-149 7-66 (70)
22 2da2_A Alpha-fetoprotein enhan 99.6 1.1E-16 3.6E-21 135.1 4.9 61 89-149 6-66 (70)
23 1ftt_A TTF-1 HD, thyroid trans 99.6 6.4E-17 2.2E-21 136.0 3.5 61 90-150 2-62 (68)
24 1ahd_P Antennapedia protein mu 99.6 1.2E-16 4.1E-21 134.5 5.0 61 90-150 2-62 (68)
25 1bw5_A ISL-1HD, insulin gene e 99.6 9E-17 3.1E-21 134.2 4.0 61 89-149 2-62 (66)
26 1yz8_P Pituitary homeobox 2; D 99.6 9.8E-17 3.3E-21 134.8 3.8 62 89-150 2-63 (68)
27 2djn_A Homeobox protein DLX-5; 99.6 1.7E-16 6E-21 134.0 5.3 61 89-149 6-66 (70)
28 2da1_A Alpha-fetoprotein enhan 99.6 1.4E-16 4.9E-21 134.3 4.7 61 89-149 6-66 (70)
29 1jgg_A Segmentation protein EV 99.6 1.9E-16 6.5E-21 129.8 5.1 58 91-148 2-59 (60)
30 2da4_A Hypothetical protein DK 99.6 1.7E-16 6E-21 137.4 4.7 60 89-148 7-70 (80)
31 2l7z_A Homeobox protein HOX-A1 99.6 2.8E-16 9.5E-21 134.0 5.6 61 89-149 6-66 (73)
32 1b8i_A Ultrabithorax, protein 99.6 1.9E-16 6.6E-21 137.7 4.5 60 90-149 20-79 (81)
33 1akh_A Protein (mating-type pr 99.6 2E-16 6.9E-21 129.9 4.1 59 88-146 3-61 (61)
34 3rkq_A Homeobox protein NKX-2. 99.6 3.4E-16 1.2E-20 126.8 5.4 57 90-146 2-58 (58)
35 2m0c_A Homeobox protein arista 99.6 3.2E-16 1.1E-20 133.6 5.4 63 88-150 7-69 (75)
36 3nar_A ZHX1, zinc fingers and 99.6 3.6E-16 1.2E-20 140.2 5.7 65 88-152 23-87 (96)
37 2k40_A Homeobox expressed in E 99.6 2.1E-16 7.1E-21 132.4 3.6 60 91-150 2-61 (67)
38 2r5y_A Homeotic protein sex co 99.6 2.8E-16 9.6E-21 138.5 4.4 60 90-149 28-87 (88)
39 3a02_A Homeobox protein arista 99.6 3.1E-16 1.1E-20 128.5 4.4 57 93-149 2-58 (60)
40 1uhs_A HOP, homeodomain only p 99.6 6.4E-16 2.2E-20 131.3 6.2 59 91-149 2-61 (72)
41 3a03_A T-cell leukemia homeobo 99.6 4.7E-16 1.6E-20 125.9 5.0 54 95-148 2-55 (56)
42 2hi3_A Homeodomain-only protei 99.6 6.7E-16 2.3E-20 131.5 6.1 59 91-149 3-62 (73)
43 2ecc_A Homeobox and leucine zi 99.6 8.5E-16 2.9E-20 132.3 5.1 57 94-150 7-63 (76)
44 1b72_A Protein (homeobox prote 99.6 1.1E-15 3.6E-20 137.3 5.6 61 90-150 34-94 (97)
45 2da5_A Zinc fingers and homeob 99.6 8E-16 2.7E-20 131.9 4.6 59 92-150 9-67 (75)
46 2ly9_A Zinc fingers and homeob 99.6 1E-15 3.5E-20 130.5 5.1 60 91-150 7-66 (74)
47 2dn0_A Zinc fingers and homeob 99.6 1E-15 3.4E-20 131.4 4.4 60 91-150 9-68 (76)
48 2cuf_A FLJ21616 protein; homeo 99.6 1.7E-15 5.8E-20 135.4 5.9 62 89-150 6-82 (95)
49 1x2n_A Homeobox protein pknox1 99.6 1.7E-15 5.7E-20 128.9 5.2 61 89-149 6-69 (73)
50 1puf_B PRE-B-cell leukemia tra 99.6 1.7E-15 5.7E-20 128.9 5.1 61 91-151 2-65 (73)
51 2ecb_A Zinc fingers and homeob 99.6 8.6E-16 2.9E-20 136.2 3.0 56 95-150 16-71 (89)
52 1e3o_C Octamer-binding transcr 99.5 1.3E-15 4.6E-20 148.4 4.1 61 88-148 99-159 (160)
53 1du6_A PBX1, homeobox protein 99.5 1.5E-15 5E-20 126.0 3.7 58 90-147 3-63 (64)
54 1b72_B Protein (PBX1); homeodo 99.5 3E-15 1E-19 131.4 5.7 61 91-151 2-65 (87)
55 1au7_A Protein PIT-1, GHF-1; c 99.5 1.9E-15 6.6E-20 145.4 4.4 61 88-148 85-145 (146)
56 1k61_A Mating-type protein alp 99.5 3.9E-15 1.3E-19 121.9 4.9 56 93-148 1-59 (60)
57 2dmp_A Zinc fingers and homeob 99.5 5.3E-15 1.8E-19 131.0 6.0 57 94-150 17-73 (89)
58 2cqx_A LAG1 longevity assuranc 99.5 1.9E-15 6.5E-20 128.8 2.9 58 91-148 9-67 (72)
59 2dmn_A Homeobox protein TGIF2L 99.5 4.4E-15 1.5E-19 129.8 5.0 63 89-151 6-71 (83)
60 2da6_A Hepatocyte nuclear fact 99.5 1.1E-14 3.6E-19 131.9 7.3 63 88-150 4-87 (102)
61 1le8_B Mating-type protein alp 99.5 3.7E-15 1.3E-19 130.1 3.7 60 91-150 3-65 (83)
62 1mnm_C Protein (MAT alpha-2 tr 99.5 7.4E-15 2.5E-19 129.2 5.5 58 90-147 27-87 (87)
63 2xsd_C POU domain, class 3, tr 99.5 3.5E-15 1.2E-19 146.2 3.3 64 87-150 96-159 (164)
64 1lfb_A Liver transcription fac 99.5 4.2E-15 1.4E-19 134.3 3.1 65 87-151 6-91 (99)
65 2l9r_A Homeobox protein NKX-3. 99.5 3.2E-15 1.1E-19 126.6 1.9 58 94-151 8-65 (69)
66 3d1n_I POU domain, class 6, tr 99.5 1.5E-14 5E-19 139.7 5.8 60 88-147 91-150 (151)
67 3nau_A Zinc fingers and homeob 99.5 1.5E-14 5E-19 121.0 4.7 53 97-149 11-63 (66)
68 1wi3_A DNA-binding protein SAT 99.5 2.8E-14 9.7E-19 119.4 5.6 58 89-146 6-64 (71)
69 1x2m_A LAG1 longevity assuranc 99.5 1.2E-14 4E-19 121.3 3.2 49 99-147 9-58 (64)
70 2e19_A Transcription factor 8; 99.5 2.3E-14 8E-19 119.4 4.1 53 95-147 8-60 (64)
71 3l1p_A POU domain, class 5, tr 99.5 3.1E-14 1.1E-18 138.2 4.9 60 89-148 95-154 (155)
72 2d5v_A Hepatocyte nuclear fact 99.4 4.7E-14 1.6E-18 137.8 3.9 62 88-149 95-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.4 1.1E-13 3.9E-18 116.2 3.8 59 96-154 4-65 (67)
74 1ic8_A Hepatocyte nuclear fact 99.3 6.9E-13 2.3E-17 133.2 2.0 61 87-147 112-193 (194)
75 3p0l_A Steroidogenic acute reg 99.2 7.3E-11 2.5E-15 119.4 15.2 191 278-500 11-213 (221)
76 1em2_A MLN64 protein; beta bar 99.2 2.7E-10 9.2E-15 115.7 17.3 194 276-502 20-226 (229)
77 2pso_A STAR-related lipid tran 99.2 2.9E-11 9.9E-16 124.5 9.6 189 282-500 33-226 (237)
78 2lk2_A Homeobox protein TGIF1; 99.2 1.5E-11 5E-16 108.8 4.8 59 94-152 9-70 (89)
79 2h8r_A Hepatocyte nuclear fact 99.1 2.3E-11 7.9E-16 123.8 4.1 60 87-146 139-219 (221)
80 2da7_A Zinc finger homeobox pr 99.1 5.3E-11 1.8E-15 100.3 4.0 46 99-144 14-59 (71)
81 1mh3_A Maltose binding-A1 home 99.0 5.8E-11 2E-15 129.0 1.5 56 91-146 366-421 (421)
82 1ln1_A PC-TP, phosphatidylchol 99.0 4.1E-09 1.4E-13 105.2 14.5 148 336-502 53-210 (214)
83 1jss_A Stard4, cholesterol-reg 99.0 4.5E-09 1.5E-13 106.6 14.6 192 277-500 24-222 (224)
84 3fo5_A Thioesterase, adipose a 98.7 6.8E-08 2.3E-12 101.0 13.2 126 338-479 91-226 (258)
85 3qsz_A STAR-related lipid tran 98.6 4.2E-07 1.5E-11 89.1 14.4 150 336-501 28-179 (189)
86 2nzz_A Penetratin conjugated G 98.5 1.1E-08 3.9E-13 76.1 -0.3 22 132-153 1-22 (37)
87 2e3n_A Lipid-transfer protein 98.4 2.9E-06 9.8E-11 87.4 13.7 149 337-502 75-247 (255)
88 2r55_A STAR-related lipid tran 96.8 0.016 5.6E-07 58.2 14.6 198 522-756 19-227 (231)
89 1jss_A Stard4, cholesterol-reg 96.0 0.027 9.1E-07 56.7 10.4 174 547-756 42-222 (224)
90 3qsz_A STAR-related lipid tran 95.8 0.094 3.2E-06 50.8 12.6 172 548-756 3-178 (189)
91 2pso_A STAR-related lipid tran 95.6 0.15 5E-06 52.1 14.0 175 546-757 48-227 (237)
92 3p0l_A Steroidogenic acute reg 95.5 0.33 1.1E-05 48.4 15.7 194 524-756 9-213 (221)
93 2d4r_A Hypothetical protein TT 95.5 0.17 5.8E-06 45.1 12.4 140 339-502 6-145 (147)
94 1em2_A MLN64 protein; beta bar 95.0 0.18 6.1E-06 50.6 12.1 194 525-756 21-224 (229)
95 1ln1_A PC-TP, phosphatidylchol 94.6 0.26 8.9E-06 48.5 11.9 174 546-756 26-208 (214)
96 3fo5_A Thioesterase, adipose a 94.1 0.28 9.7E-06 50.9 11.4 196 487-723 9-215 (258)
97 3tfz_A Cyclase; helix-GRIP, BE 91.1 3.8 0.00013 39.0 14.0 146 338-505 8-163 (172)
98 3tvq_A Multifunctional cyclase 90.9 5.1 0.00017 38.6 14.8 144 338-506 6-151 (169)
99 1t17_A Conserved hypothetical 90.6 1.4 4.8E-05 40.5 10.0 141 338-502 5-145 (148)
100 2ys9_A Homeobox and leucine zi 89.1 0.23 8E-06 41.8 3.0 39 101-139 17-55 (70)
101 2jn6_A Protein CGL2762, transp 88.1 0.1 3.4E-06 45.4 0.2 43 95-140 4-46 (97)
102 3tl1_A WHIE ORF VI, polyketide 86.5 22 0.00077 33.6 15.8 143 338-505 6-150 (159)
103 1ci6_A Transcription factor AT 86.1 1.5 5.2E-05 36.0 6.2 41 150-211 21-61 (63)
104 3p9v_A Uncharacterized protein 86.0 13 0.00043 35.0 13.6 136 338-495 10-145 (161)
105 1hjb_A Ccaat/enhancer binding 85.3 1.5 5.1E-05 38.5 6.1 29 142-173 29-57 (87)
106 1t2k_D Cyclic-AMP-dependent tr 84.6 2.1 7.1E-05 34.7 6.3 39 151-210 21-59 (61)
107 2jee_A YIIU; FTSZ, septum, coi 81.4 1.7 5.8E-05 37.6 4.7 24 196-219 50-77 (81)
108 2wt7_B Transcription factor MA 81.2 5.7 0.0002 35.0 8.1 67 128-215 17-83 (90)
109 1jnm_A Proto-oncogene C-JUN; B 78.3 2.1 7.2E-05 34.9 4.2 39 151-210 21-59 (62)
110 1gu4_A CAAT/enhancer binding p 76.4 3.9 0.00013 35.1 5.4 19 154-172 38-56 (78)
111 2wt7_A Proto-oncogene protein 76.3 6.2 0.00021 32.2 6.4 24 151-174 22-45 (63)
112 2e3n_A Lipid-transfer protein 72.4 3.1 0.00011 42.1 4.6 199 527-755 28-244 (255)
113 3m91_A Proteasome-associated A 69.0 13 0.00044 29.4 6.4 40 154-214 11-50 (51)
114 1l8d_A DNA double-strand break 68.4 5.8 0.0002 35.4 5.0 12 177-188 47-58 (112)
115 2j5u_A MREC protein; bacterial 68.1 3.1 0.00011 43.0 3.5 15 197-211 46-60 (255)
116 1gd2_E Transcription factor PA 63.1 12 0.00039 31.6 5.4 32 139-170 15-47 (70)
117 3s9g_A Protein hexim1; cyclin 61.6 2.4 8.4E-05 37.7 1.0 54 151-211 36-89 (104)
118 2dgc_A Protein (GCN4); basic d 57.9 13 0.00045 30.5 4.7 16 199-214 42-57 (63)
119 2glo_A Brinker CG9653-PA; prot 55.3 9.1 0.00031 30.0 3.4 45 94-139 3-47 (59)
120 3ra3_B P2F; coiled coil domain 50.9 10 0.00035 25.6 2.4 18 197-214 3-20 (28)
121 1hlv_A CENP-B, major centromer 50.7 16 0.00055 32.7 4.7 48 93-143 4-51 (131)
122 2yy0_A C-MYC-binding protein; 49.9 20 0.00068 28.5 4.4 18 195-212 20-37 (53)
123 2elh_A CG11849-PA, LD40883P; s 49.3 13 0.00043 31.6 3.5 43 91-138 17-59 (87)
124 3m9b_A Proteasome-associated A 48.9 18 0.00062 37.4 5.2 38 157-215 59-96 (251)
125 3a5t_A Transcription factor MA 48.1 2.6 9E-05 38.3 -1.0 67 128-215 27-93 (107)
126 3he5_B Synzip2; heterodimeric 47.9 53 0.0018 25.0 6.2 23 195-217 25-47 (52)
127 2pcs_A Conserved protein; stru 47.5 1.6E+02 0.0055 26.6 15.5 119 340-481 8-128 (162)
128 2qpv_A Uncharacterized protein 47.2 11 0.00037 35.9 3.1 31 580-610 27-57 (156)
129 1jko_C HIN recombinase, DNA-in 45.1 13 0.00043 27.2 2.5 42 96-142 5-46 (52)
130 1t6f_A Geminin; coiled-coil, c 44.7 23 0.00079 26.0 3.6 12 159-170 7-18 (37)
131 1uii_A Geminin; human, DNA rep 43.8 62 0.0021 28.0 6.8 22 197-218 56-77 (83)
132 3p51_A Uncharacterized protein 43.2 1.3E+02 0.0044 28.3 10.0 112 339-469 6-118 (160)
133 1hjb_A Ccaat/enhancer binding 42.9 40 0.0014 29.4 5.7 26 193-218 49-74 (87)
134 1deb_A APC protein, adenomatou 41.4 22 0.00075 28.0 3.3 27 194-220 10-36 (54)
135 3hug_A RNA polymerase sigma fa 40.7 23 0.00078 30.0 3.8 48 96-148 37-84 (92)
136 1go4_E MAD1 (mitotic arrest de 39.9 94 0.0032 27.8 7.7 69 151-219 18-93 (100)
137 1tc3_C Protein (TC3 transposas 39.3 29 0.001 24.6 3.8 40 96-140 5-44 (51)
138 3f08_A Uncharacterized protein 38.4 2.3E+02 0.008 25.8 10.8 113 339-485 6-130 (146)
139 2d4r_A Hypothetical protein TT 37.1 13 0.00043 32.5 1.7 28 582-609 4-31 (147)
140 1s7o_A Hypothetical UPF0122 pr 36.3 53 0.0018 29.4 5.7 49 96-149 22-70 (113)
141 2j5u_A MREC protein; bacterial 36.2 19 0.00065 37.1 3.0 19 199-217 41-59 (255)
142 1wlq_A Geminin; coiled-coil; 2 35.6 1.3E+02 0.0043 26.1 7.5 15 197-211 55-69 (83)
143 2dfs_A Myosin-5A; myosin-V, in 35.4 24 0.00082 43.6 4.2 64 143-216 982-1045(1080)
144 1xsv_A Hypothetical UPF0122 pr 34.6 59 0.002 28.9 5.7 51 96-151 25-75 (113)
145 3oja_A Leucine-rich immune mol 34.5 77 0.0026 34.8 7.8 24 193-216 441-464 (487)
146 1gd2_E Transcription factor PA 34.4 46 0.0016 27.9 4.5 15 199-213 48-62 (70)
147 2zxx_A Geminin; coiled-coil, c 33.7 1E+02 0.0034 26.5 6.5 21 197-217 51-71 (79)
148 3m48_A General control protein 33.6 34 0.0012 24.7 3.0 23 195-217 8-30 (33)
149 2ns9_A Hypothetical protein AP 32.6 16 0.00053 33.2 1.5 29 581-609 14-42 (157)
150 3hnw_A Uncharacterized protein 32.4 63 0.0022 30.3 5.7 22 194-215 110-131 (138)
151 2wvr_A Geminin; DNA replicatio 32.4 94 0.0032 31.1 7.1 52 155-227 111-165 (209)
152 1wlq_A Geminin; coiled-coil; 2 32.2 1.1E+02 0.0037 26.5 6.5 23 196-218 47-69 (83)
153 2pcs_A Conserved protein; stru 32.1 14 0.00047 34.0 1.1 28 582-609 5-32 (162)
154 1t17_A Conserved hypothetical 31.4 23 0.0008 32.1 2.5 28 583-610 5-32 (148)
155 3mq7_A Bone marrow stromal ant 30.6 26 0.0009 32.2 2.6 47 129-175 41-87 (121)
156 2o8x_A Probable RNA polymerase 30.4 29 0.00099 27.2 2.6 47 96-147 15-61 (70)
157 1gu4_A CAAT/enhancer binding p 30.2 60 0.0021 27.7 4.6 19 197-215 46-64 (78)
158 3ggn_A Uncharacterized protein 29.9 23 0.00078 32.8 2.2 29 581-609 5-33 (155)
159 3iv1_A Tumor susceptibility ge 29.7 60 0.002 27.8 4.5 36 140-175 13-48 (78)
160 2leq_A Uncharacterized protein 29.1 29 0.00098 30.7 2.6 28 581-608 6-33 (146)
161 3ggn_A Uncharacterized protein 28.8 3.3E+02 0.011 24.7 13.2 137 339-507 8-145 (155)
162 3oja_B Anopheles plasmodium-re 28.6 90 0.0031 35.0 7.2 21 195-215 559-579 (597)
163 3q6a_A Uncharacterized protein 28.5 31 0.0011 30.8 2.8 27 583-609 4-30 (135)
164 2oa5_A Hypothetical protein BQ 27.8 8.3 0.00028 35.1 -1.2 29 184-212 5-33 (110)
165 1uii_A Geminin; human, DNA rep 27.6 1.5E+02 0.005 25.7 6.6 38 156-214 43-80 (83)
166 3mzy_A RNA polymerase sigma-H 27.5 59 0.002 29.1 4.5 47 96-148 109-155 (164)
167 3m9b_A Proteasome-associated A 27.2 56 0.0019 33.8 4.7 21 153-173 62-82 (251)
168 1p4w_A RCSB; solution structur 27.0 67 0.0023 28.1 4.6 46 94-145 32-77 (99)
169 3c57_A Two component transcrip 24.7 48 0.0016 28.4 3.2 46 95-146 26-71 (95)
170 1x53_A Activator of 90 kDa hea 24.1 35 0.0012 30.9 2.3 28 582-609 13-40 (145)
171 1je8_A Nitrate/nitrite respons 23.8 68 0.0023 26.6 3.9 48 94-147 19-66 (82)
172 2rgt_A Fusion of LIM/homeobox 23.4 3.2 0.00011 39.7 -5.2 29 90-118 136-164 (169)
173 2le1_A Uncharacterized protein 23.4 3.9E+02 0.014 23.7 12.0 47 340-392 7-53 (151)
174 1dh3_A Transcription factor CR 23.1 77 0.0026 25.1 3.8 20 196-215 31-50 (55)
175 3tfz_A Cyclase; helix-GRIP, BE 22.6 40 0.0014 31.7 2.4 29 581-609 6-34 (172)
176 1fse_A GERE; helix-turn-helix 22.4 76 0.0026 24.9 3.8 47 94-146 9-55 (74)
177 1r8e_A Multidrug-efflux transp 22.4 1.1E+02 0.0037 30.7 5.8 36 93-141 41-76 (278)
178 1xn6_A Hypothetical protein BC 22.1 32 0.0011 30.9 1.6 27 583-609 11-37 (143)
179 2le1_A Uncharacterized protein 21.9 51 0.0018 29.9 3.0 28 582-609 4-31 (151)
180 3gpv_A Transcriptional regulat 21.8 1.2E+02 0.0042 28.2 5.6 36 92-140 50-85 (148)
181 3a2a_A Voltage-gated hydrogen 21.4 1.9E+02 0.0064 23.2 5.5 25 195-219 26-50 (58)
182 3a5t_A Transcription factor MA 21.4 57 0.0019 29.6 3.0 22 195-216 80-101 (107)
183 1iuf_A Centromere ABP1 protein 21.3 80 0.0027 29.1 4.2 47 91-140 6-59 (144)
184 2oxj_A Hybrid alpha/beta pepti 20.6 85 0.0029 22.7 3.1 22 196-217 10-31 (34)
185 2kew_A Uncharacterized protein 20.6 34 0.0012 31.4 1.4 28 582-609 12-39 (152)
186 1z94_A Conserved hypothetical 20.5 31 0.0011 30.6 1.1 26 584-609 7-32 (147)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=183.37 Aligned_cols=200 Identities=15% Similarity=0.212 Sum_probs=156.6
Q ss_pred CChHHHHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHH
Q 004337 274 ADKPMIIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEI 353 (760)
Q Consensus 274 ~~~~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~ 353 (760)
.+++.++++|++||+||+++++. +..|....+. ++.+.|.+.. .+..+.+.|..|+|.+++.+|++.
T Consensus 19 ~~~~~y~~~a~~~~~~~l~~~~~-~~~W~~~~~~--------~gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~ 85 (231)
T 2r55_A 19 YFQSMAAQMSEAVAEKMLQYRRD-TAGWKICREG--------NGVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDC 85 (231)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC-CSSCEEEECC--------SSEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC-CCCCEEEEeC--------CCEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHH
Confidence 35889999999999999999975 4789876431 2233432211 122347889999999999999999
Q ss_pred hcC-----hhhHhhhhccccccceEeeEeecccCCCCCCeeeeeeh-hhhcCCCCccCceeEEEEeeeeeCCceEEEEEE
Q 004337 354 LMD-----VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTA-EFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDV 427 (760)
Q Consensus 354 lmD-----~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~a-El~v~SPLvp~Re~~fLRyckq~~~g~w~VvDv 427 (760)
||+ +.+|-..|. .++.++.|+. + -.++|. ....++++|++|||.++||+++.++|.|+|+.+
T Consensus 86 l~~~d~~~r~~Wd~~~~----~~~vle~i~~------~--~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~ 153 (231)
T 2r55_A 86 VKPAVGGLRVKWDENVT----GFEIIQSITD------T--LCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNAT 153 (231)
T ss_dssp HCC--CCSHHHHCTTCS----EEEEEEECSS------S--EEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEE
T ss_pred HHhhCcchhhhhccccc----eeEEEEEcCC------C--EEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEE
Confidence 977 899988874 5566666651 1 233442 223456799999999999999999999999999
Q ss_pred ecCCCC-C--CCCcceeecCccceEEecC--CCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHHHH
Q 004337 428 SLDNLR-P--SPAVRCRRRPSGCLIQEMP--NGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCERL 502 (760)
Q Consensus 428 S~d~~~-~--~~~~~~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~cerl 502 (760)
|++.-. | ..++|++.++|||+||+++ +|.|+|||+.|++..-+ +| +.++++.++.++..|++.|+++|+.+
T Consensus 154 Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 154 HVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp ECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred eccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 998432 1 2679999999999999998 78999999999998876 55 67899999999999999999999853
No 2
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-17 Score=145.47 Aligned_cols=63 Identities=30% Similarity=0.314 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
.+++||.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+++
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 344688899999999999999999999999999999999999999999999999999999864
No 3
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=1.3e-17 Score=148.90 Aligned_cols=75 Identities=31% Similarity=0.474 Sum_probs=61.5
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHHhHHHHHHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENE 162 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene 162 (760)
+++||+|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..+++....++.++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~~ 89 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANR 89 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 446788999999999999999999999999999999999999999999999999999999877766666555444
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=143.44 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=58.5
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
.++||.|+.||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34578899999999999999999999999999999999999999999999999999999864
No 5
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=143.09 Aligned_cols=63 Identities=29% Similarity=0.440 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
..++||.|+.||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 344578899999999999999999999999999999999999999999999999999999853
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.67 E-value=5.2e-17 Score=139.81 Aligned_cols=65 Identities=32% Similarity=0.467 Sum_probs=60.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (760)
++++|.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+++...
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 34577899999999999999999999999999999999999999999999999999999976543
No 7
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.67 E-value=3.9e-17 Score=142.02 Aligned_cols=60 Identities=20% Similarity=0.337 Sum_probs=56.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKE----CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~----~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
.++||.|+.||.+|+..||..|+. ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 345788999999999999999999 999999999999999999999999999999999985
No 8
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.66 E-value=2.7e-17 Score=135.67 Aligned_cols=61 Identities=33% Similarity=0.356 Sum_probs=53.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
+++|.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 3578899999999999999999999999999999999999999999999999999999863
No 9
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=9.4e-17 Score=139.17 Aligned_cols=62 Identities=24% Similarity=0.474 Sum_probs=58.7
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
+||.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+++..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 47889999999999999999999999999999999999999999999999999999997544
No 10
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.66 E-value=6.6e-17 Score=140.38 Aligned_cols=64 Identities=27% Similarity=0.568 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
++++||.|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 3446788999999999999999999999999999999999999999999999999999998653
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.3e-17 Score=139.95 Aligned_cols=63 Identities=29% Similarity=0.550 Sum_probs=59.1
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (760)
+||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++..++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999975543
No 12
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.65 E-value=6.8e-17 Score=133.80 Aligned_cols=59 Identities=31% Similarity=0.403 Sum_probs=55.8
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
+||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 47889999999999999999999999999999999999999999999999999999985
No 13
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.65 E-value=8.2e-17 Score=140.07 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=55.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhc-----CCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKE-----CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~-----~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
+++||.|+.||.+|+..|| .|.+ ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 4468889999999999999 7999 999999999999999999999999999999999985
No 14
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=7e-17 Score=136.45 Aligned_cols=60 Identities=23% Similarity=0.411 Sum_probs=57.4
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
+||+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 477889999999999999999999999999999999999999999999999999999854
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.64 E-value=7.6e-17 Score=132.59 Aligned_cols=58 Identities=33% Similarity=0.606 Sum_probs=53.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
+||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4788999999999999999999999999999999999999999999999999999997
No 16
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=6.1e-17 Score=140.27 Aligned_cols=62 Identities=26% Similarity=0.514 Sum_probs=58.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
+.||.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999654
No 17
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.64 E-value=1e-16 Score=134.77 Aligned_cols=62 Identities=31% Similarity=0.472 Sum_probs=58.7
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
.||.|+.||.+|+..||..|..++||+..++..||.++||+++||++||||||+|+|++..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 47889999999999999999999999999999999999999999999999999999997654
No 18
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.64 E-value=2.8e-16 Score=135.20 Aligned_cols=63 Identities=35% Similarity=0.447 Sum_probs=59.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
+.+|.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+....
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 347788999999999999999999999999999999999999999999999999999997543
No 19
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=134.31 Aligned_cols=60 Identities=27% Similarity=0.551 Sum_probs=57.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
.||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 477889999999999999999999999999999999999999999999999999999854
No 20
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=1.4e-16 Score=129.59 Aligned_cols=57 Identities=33% Similarity=0.471 Sum_probs=55.1
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
||+|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999997
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.7e-16 Score=134.15 Aligned_cols=60 Identities=32% Similarity=0.416 Sum_probs=57.1
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
.+++|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 467889999999999999999999999999999999999999999999999999999854
No 22
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=135.15 Aligned_cols=61 Identities=26% Similarity=0.464 Sum_probs=57.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
++||.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 3578899999999999999999999999999999999999999999999999999999854
No 23
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.63 E-value=6.4e-17 Score=136.03 Aligned_cols=61 Identities=38% Similarity=0.551 Sum_probs=58.2
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
+||.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5788999999999999999999999999999999999999999999999999999999654
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.63 E-value=1.2e-16 Score=134.47 Aligned_cols=61 Identities=30% Similarity=0.447 Sum_probs=58.0
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
+||.|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4788999999999999999999999999999999999999999999999999999999653
No 25
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.63 E-value=9e-17 Score=134.19 Aligned_cols=61 Identities=25% Similarity=0.507 Sum_probs=57.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
++||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 3578899999999999999999999999999999999999999999999999999999853
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.63 E-value=9.8e-17 Score=134.82 Aligned_cols=62 Identities=27% Similarity=0.543 Sum_probs=58.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
++||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 35788999999999999999999999999999999999999999999999999999998654
No 27
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=134.01 Aligned_cols=61 Identities=31% Similarity=0.471 Sum_probs=57.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
+.||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 3478899999999999999999999999999999999999999999999999999999853
No 28
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=134.34 Aligned_cols=61 Identities=25% Similarity=0.447 Sum_probs=57.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
+.||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 3478899999999999999999999999999999999999999999999999999999854
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=1.9e-16 Score=129.80 Aligned_cols=58 Identities=29% Similarity=0.424 Sum_probs=55.3
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678999999999999999999999999999999999999999999999999999984
No 30
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-16 Score=137.37 Aligned_cols=60 Identities=10% Similarity=0.274 Sum_probs=57.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKEC----PHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~----~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
++||.|+.||.+|+..||..|+.+ +||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 457889999999999999999999 999999999999999999999999999999999984
No 31
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.62 E-value=2.8e-16 Score=134.00 Aligned_cols=61 Identities=26% Similarity=0.395 Sum_probs=57.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
+.||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3578899999999999999999999999999999999999999999999999999999864
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.61 E-value=1.9e-16 Score=137.66 Aligned_cols=60 Identities=28% Similarity=0.468 Sum_probs=54.6
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
+||.|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+.
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 477899999999999999999999999999999999999999999999999999999864
No 33
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.61 E-value=2e-16 Score=129.87 Aligned_cols=59 Identities=27% Similarity=0.499 Sum_probs=48.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (760)
.+++|.|++||.+|+..||..|..++||+..++.+||.++||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 34578899999999999999999999999999999999999999999999999999986
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.61 E-value=3.4e-16 Score=126.77 Aligned_cols=57 Identities=35% Similarity=0.488 Sum_probs=54.8
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (760)
+||.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467889999999999999999999999999999999999999999999999999986
No 35
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-16 Score=133.57 Aligned_cols=63 Identities=27% Similarity=0.510 Sum_probs=58.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
++++|.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++..
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 345788999999999999999999999999999999999999999999999999999998643
No 36
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.61 E-value=3.6e-16 Score=140.15 Aligned_cols=65 Identities=18% Similarity=0.375 Sum_probs=57.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (760)
+..+|+|++||.+|+..||..|+.++||+..+|.+||++|||+++||++||||||+|+|+++.+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 33467889999999999999999999999999999999999999999999999999999976443
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.61 E-value=2.1e-16 Score=132.36 Aligned_cols=60 Identities=30% Similarity=0.533 Sum_probs=57.3
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
||+|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 678899999999999999999999999999999999999999999999999999998654
No 38
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.60 E-value=2.8e-16 Score=138.55 Aligned_cols=60 Identities=32% Similarity=0.466 Sum_probs=55.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
.||.|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 477899999999999999999999999999999999999999999999999999999853
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.60 E-value=3.1e-16 Score=128.50 Aligned_cols=57 Identities=32% Similarity=0.567 Sum_probs=50.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 93 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 478999999999999999999999999999999999999999999999999999864
No 40
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=6.4e-16 Score=131.26 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=55.7
Q ss_pred CCCCCCCChHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKE-CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
.++|++||.+|+..||..|.. ++||+..+|.+||+++||+++||++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 457789999999999999996 99999999999999999999999999999999999854
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.60 E-value=4.7e-16 Score=125.91 Aligned_cols=54 Identities=31% Similarity=0.484 Sum_probs=51.2
Q ss_pred CCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 95 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
+.||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 42
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=6.7e-16 Score=131.54 Aligned_cols=59 Identities=22% Similarity=0.360 Sum_probs=55.9
Q ss_pred CCCCCCCChHHHHHHHHHHh-cCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFK-ECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~-~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
+++|++||.+|+..||..|. .++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999999 499999999999999999999999999999999999854
No 43
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=8.5e-16 Score=132.26 Aligned_cols=57 Identities=23% Similarity=0.455 Sum_probs=53.7
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 94 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 94 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
|.+||.+|+.+||..|..++||+..+|++||+++||+++||++||||||+|+|+.+.
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 456999999999999999999999999999999999999999999999999998643
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.1e-15 Score=137.28 Aligned_cols=61 Identities=30% Similarity=0.404 Sum_probs=55.9
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
.+|.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++..
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 4778999999999999999999999999999999999999999999999999999998653
No 45
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=8e-16 Score=131.87 Aligned_cols=59 Identities=20% Similarity=0.509 Sum_probs=55.1
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
++|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 34567999999999999999999999999999999999999999999999999998654
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.57 E-value=1e-15 Score=130.49 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=57.1
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
++.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+++.
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 678899999999999999999999999999999999999999999999999999998643
No 47
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-15 Score=131.42 Aligned_cols=60 Identities=17% Similarity=0.393 Sum_probs=56.1
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
++.|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+|++..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 445788999999999999999999999999999999999999999999999999998643
No 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=1.7e-15 Score=135.44 Aligned_cols=62 Identities=24% Similarity=0.513 Sum_probs=58.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------CCchhhhcccccchhhHHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELG---------------LEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------L~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
++||.|+.||++|+..||..|+.++||+..+|++||.+|+ |++.||++||||||+|+|+++.
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999999999999999 9999999999999999998654
No 49
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1.7e-15 Score=128.90 Aligned_cols=61 Identities=23% Similarity=0.440 Sum_probs=57.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
+.|++|+.|+.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 34778899999999999999987 99999999999999999999999999999999999864
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.56 E-value=1.7e-15 Score=128.91 Aligned_cols=61 Identities=23% Similarity=0.534 Sum_probs=57.5
Q ss_pred CCCCCCCChHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFF---KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
||+|++||.+|+..||..| ..++||+..++..||.++||+++||++||||||+|+|++..+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6778999999999999999 999999999999999999999999999999999999986544
No 51
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=8.6e-16 Score=136.19 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=53.3
Q ss_pred CCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 95 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
.+||.+|+.+||+.|..++||+..+|.+||..|||+++||++||||||+|||++.+
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999998654
No 52
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.55 E-value=1.3e-15 Score=148.45 Aligned_cols=61 Identities=20% Similarity=0.383 Sum_probs=54.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
+++||+|+.||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4568889999999999999999999999999999999999999999999999999999984
No 53
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.55 E-value=1.5e-15 Score=125.97 Aligned_cols=58 Identities=24% Similarity=0.483 Sum_probs=55.5
Q ss_pred CCCCCCCCChHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFF---KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
.+++|+.||.+|+..||..| ..++||+..++.+||.++||+++||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999 99999999999999999999999999999999999986
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.55 E-value=3e-15 Score=131.45 Aligned_cols=61 Identities=23% Similarity=0.534 Sum_probs=56.8
Q ss_pred CCCCCCCChHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFF---KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
||+|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6788999999999999999 899999999999999999999999999999999999986543
No 55
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.54 E-value=1.9e-15 Score=145.36 Aligned_cols=61 Identities=28% Similarity=0.449 Sum_probs=55.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
+++||+|+.||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3457789999999999999999999999999999999999999999999999999999985
No 56
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.53 E-value=3.9e-15 Score=121.88 Aligned_cols=56 Identities=32% Similarity=0.545 Sum_probs=53.4
Q ss_pred CCCCCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 93 RYHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 93 ~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
+|++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 3578999999999999999 9999999999999999999999999999999999973
No 57
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.3e-15 Score=130.96 Aligned_cols=57 Identities=21% Similarity=0.408 Sum_probs=53.3
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 94 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 94 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
+.+||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+|++..
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 345999999999999999999999999999999999999999999999999998543
No 58
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=1.9e-15 Score=128.83 Aligned_cols=58 Identities=26% Similarity=0.416 Sum_probs=54.1
Q ss_pred CCCCCCCChHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFF-KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
.+++.+++.+|+..||..| ..++||+..+|.+||+++||+++||++||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4556678999999999999 999999999999999999999999999999999999974
No 59
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.53 E-value=4.4e-15 Score=129.79 Aligned_cols=63 Identities=21% Similarity=0.370 Sum_probs=57.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
++||+|++|+.+|+..||..|.+ ++||+..+|.+||.++||+++||++||||||+|+|+...+
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 35778899999999999999988 5999999999999999999999999999999999986543
No 60
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=131.90 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=58.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHh---------------------CCCchhhhcccccchhhHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSREL---------------------GLEPLQVKFWFQNKRTQMK 146 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L---------------------gL~~rQVkvWFQNRRaK~K 146 (760)
+++||.|+.||+.|+.+||+.|+.++||+..+|++||.+| .|++.+|++||||||+|+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 3468889999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHH
Q 004337 147 TQHE 150 (760)
Q Consensus 147 r~~~ 150 (760)
+++.
T Consensus 84 r~~~ 87 (102)
T 2da6_A 84 FRQK 87 (102)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 8654
No 61
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.52 E-value=3.7e-15 Score=130.10 Aligned_cols=60 Identities=28% Similarity=0.457 Sum_probs=54.8
Q ss_pred CCCCCCCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
+++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 455677999999999999999 999999999999999999999999999999999998643
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.52 E-value=7.4e-15 Score=129.15 Aligned_cols=58 Identities=33% Similarity=0.540 Sum_probs=55.1
Q ss_pred CCCCCCCCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
++|+|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4667899999999999999999 999999999999999999999999999999999983
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.51 E-value=3.5e-15 Score=146.22 Aligned_cols=64 Identities=27% Similarity=0.458 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (760)
..++||+|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 3456788999999999999999999999999999999999999999999999999999999754
No 64
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.51 E-value=4.2e-15 Score=134.30 Aligned_cols=65 Identities=20% Similarity=0.389 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHH------------------hC---CCchhhhcccccchhhH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRE------------------LG---LEPLQVKFWFQNKRTQM 145 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~------------------Lg---L~~rQVkvWFQNRRaK~ 145 (760)
++++||.|+.||++|+..||..|+.++||+..+|++||.+ || |++.||++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4456888999999999999999999999999999999999 88 99999999999999999
Q ss_pred HHHHHH
Q 004337 146 KTQHER 151 (760)
Q Consensus 146 Kr~~~r 151 (760)
|+++..
T Consensus 86 k~k~~~ 91 (99)
T 1lfb_A 86 AFRHKL 91 (99)
T ss_dssp SCCC--
T ss_pred HHhchh
Confidence 886643
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.50 E-value=3.2e-15 Score=126.57 Aligned_cols=58 Identities=29% Similarity=0.438 Sum_probs=54.0
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 94 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 94 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
-..+|..|+..||..|+.++||+..+|.+||+++||+++||++||||||+|+|+++..
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 3468999999999999999999999999999999999999999999999999986543
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=139.75 Aligned_cols=60 Identities=30% Similarity=0.643 Sum_probs=57.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
+++||+|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 345788999999999999999999999999999999999999999999999999999996
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=121.00 Aligned_cols=53 Identities=28% Similarity=0.466 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 97 HTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 97 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
-|.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|+-+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999843
No 68
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=2.8e-14 Score=119.44 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=54.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCchhhhcccccchhhHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKE-CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (760)
++||.|+.|+.+|+..|+..|+. ++||+.+.|+.||.++||++++|++||||||--.|
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 35888999999999999999999 99999999999999999999999999999997544
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.47 E-value=1.2e-14 Score=121.28 Aligned_cols=49 Identities=29% Similarity=0.528 Sum_probs=46.5
Q ss_pred hHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 99 QHQIQEMEAFF-KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 99 ~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
+.|+.+||+.| ..++||+..+|.+||++|||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 56899999999 67999999999999999999999999999999999986
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=2.3e-14 Score=119.45 Aligned_cols=53 Identities=13% Similarity=0.309 Sum_probs=50.1
Q ss_pred CCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 95 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
..++.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34678999999999999999999999999999999999999999999999886
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.45 E-value=3.1e-14 Score=138.19 Aligned_cols=60 Identities=27% Similarity=0.494 Sum_probs=56.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 89 krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
++||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 357789999999999999999999999999999999999999999999999999999973
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.42 E-value=4.7e-14 Score=137.75 Aligned_cols=62 Identities=29% Similarity=0.359 Sum_probs=54.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 88 ~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
++.||+|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 34578899999999999999999999999999999999999999999999999999999854
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=1.1e-13 Score=116.18 Aligned_cols=59 Identities=29% Similarity=0.475 Sum_probs=50.9
Q ss_pred CCChHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHHHh
Q 004337 96 RHTQHQIQEMEAFFK---ECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHEN 154 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~---~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~ 154 (760)
+|+.+|+..||..|. .++||+..+|.+||.++||+++||++||||||+|+|+...++.+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 699999999999999 99999999999999999999999999999999999987665543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.27 E-value=6.9e-13 Score=133.19 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCchhhhcccccchhhH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELG---------------------LEPLQVKFWFQNKRTQM 145 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------------L~~rQVkvWFQNRRaK~ 145 (760)
.+++||.|+.||+.|+..||+.|..++||+..+|++||..++ |++.||++||||||+|+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 345688899999999999999999999999999999999999 99999999999999998
Q ss_pred HH
Q 004337 146 KT 147 (760)
Q Consensus 146 Kr 147 (760)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 85
No 75
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.25 E-value=7.3e-11 Score=119.36 Aligned_cols=191 Identities=16% Similarity=0.253 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceeecC-C-CCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhc
Q 004337 278 MIIELAVAAMEELIRMAQMGEPLWMTSL-D-GTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILM 355 (760)
Q Consensus 278 ~~~~lA~~Am~El~~la~~~eplWi~~~-~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lm 355 (760)
-...+|++||+|++++.+ ++.-|.... + .+.. =|.|.+| + . | -.-|..++|...+..|.+.|+
T Consensus 11 ~y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~gv~-----vy~~~~~---~--~-g---~~~k~~~~v~~~~~~v~~~l~ 75 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILS-NQEGWKKESQQDNGDK-----VMSKVVP---D--V-G---KVFRLEVVVDQPMERLYEELV 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTCEEEEECTTSCE-----EEEEECS---S--S-C---EEEEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCeEeeecCCCcE-----EEEEEcC---C--C-c---eEEEEEEEEcCCHHHHHHHHH
Confidence 456899999999999976 345797652 2 2211 2333333 1 1 2 344889999999999999984
Q ss_pred -C---hhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhh-cCCCCccCceeEEEEeeeeeCCceEEEEEEecC
Q 004337 356 -D---VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQ-VPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLD 430 (760)
Q Consensus 356 -D---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~-v~SPLvp~Re~~fLRyckq~~~g~w~VvDvS~d 430 (760)
| +.+|-..| ...+||..-.. .+ .+.|.... .+.+++++|||.++||.++. +|.++|+-.|++
T Consensus 76 ~d~~~r~~Wd~~~-------~~~~vle~~~~----~t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~ 142 (221)
T 3p0l_A 76 ERMEAMGEWNPNV-------KEIKVLQKIGK----DT-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATD 142 (221)
T ss_dssp TTGGGTTTSCTTC-------SEEEEEEECSS----SE-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECC
T ss_pred hccchhhhcCcch-------heEEEEEecCC----Ce-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEecc
Confidence 6 56787776 24445544322 22 45664332 23568999999999999985 688999999987
Q ss_pred CCC-C--CCCcceeecCccceEEecCCC--ceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004337 431 NLR-P--SPAVRCRRRPSGCLIQEMPNG--YSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (760)
Q Consensus 431 ~~~-~--~~~~~~~rlPSGclIq~~~nG--~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ce 500 (760)
.-. | ..++|+..+++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+.-.++..|+++|+
T Consensus 143 ~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 143 FGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 432 2 268999999999999999988 999999999998766 44 456777777788889999998887
No 76
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.21 E-value=2.7e-10 Score=115.68 Aligned_cols=194 Identities=13% Similarity=0.208 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeecCCC--CccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHH-H
Q 004337 276 KPMIIELAVAAMEELIRMAQMGEPLWMTSLDG--TAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLV-E 352 (760)
Q Consensus 276 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~--~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LV-e 352 (760)
....++++++|+++++++... .--|-..... +.. -|.+..+. .|. .-|..++|...+..|. +
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~-----vy~~~~~~------~g~---~~k~~~~v~~~~~~v~~~ 84 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDT-----VYTIEVPF------HGK---TFILKTFLPCPAELVYQE 84 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCE-----EEEEEETT------TEE---EEEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCE-----EEEEecCC------CCc---eEEEEEEecCCHHHHHHH
Confidence 367789999999999999863 3468664321 111 14443321 121 3488899999999998 7
Q ss_pred HhcCh---hhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcC--CCCccCceeEEEEeeeeeCCceEEEEEE
Q 004337 353 ILMDV---NQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVP--SPLVPTRESYYVRYCKQHGEGTWAVVDV 427 (760)
Q Consensus 353 ~lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~--SPLvp~Re~~fLRyckq~~~g~w~VvDv 427 (760)
+|+|. .+|-..| ..+..++.|. . ++ .+ +-++..+ .++++.|||.++|+++.. ++.++||-.
T Consensus 85 ~~~d~~~r~~Wd~~~----~~~~vle~~~---~----~t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~ 150 (229)
T 1em2_A 85 VILQPERMVLWNKTV----TACQILQRVE---D----NT-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGI 150 (229)
T ss_dssp TTTCHHHHTTTCTTE----EEEEEEEEET---T----TE-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEE
T ss_pred HHhCccchhhccccc----ceEEEEEecC---C----Ce-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEe
Confidence 77665 4665555 2344555543 2 12 23 3346655 678999999999999997 566999999
Q ss_pred ecCCCC-C--CCCcceeecCccceEEecC--CCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHHHH
Q 004337 428 SLDNLR-P--SPAVRCRRRPSGCLIQEMP--NGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCERL 502 (760)
Q Consensus 428 S~d~~~-~--~~~~~~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~cerl 502 (760)
|++.-. | ..++|+..+++|++|++++ +|.|+|||+-|++..-+ +| +.++++.+.-+.-.+++.|+.+|+.+
T Consensus 151 Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 151 ATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp ECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 997542 1 2689999999999999987 67899999999987765 55 67788888888888999998888754
No 77
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.20 E-value=2.9e-11 Score=124.50 Aligned_cols=189 Identities=16% Similarity=0.193 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHhhcCCCCceeecCCC-CccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHH-HHhcChhh
Q 004337 282 LAVAAMEELIRMAQMGEPLWMTSLDG-TAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLV-EILMDVNQ 359 (760)
Q Consensus 282 lA~~Am~El~~la~~~eplWi~~~~~-~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LV-e~lmD~~~ 359 (760)
+++.++.|+++.+.....-|-..... +..+ |.+..+ .|...-.-|..++|...+.+++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~~gi~V-----~~k~~~-------~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~ 100 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSSTDNTDL-----AFKKVG-------DGNPLKLWKASVEVEAPPSVVLNRVLRERHL 100 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCSSSCEE-----EEECCC-------SSCCCCEEEEEEEESSCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCCeEE-----EEEEcC-------CCCCcEEEEEEEEEcCChHHHHHHHHhhhhh
Confidence 45677788887765545569765432 1111 222111 1223335577888877777764 78999999
Q ss_pred HhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeee-eCCceEEEEEEecCCC--CCCC
Q 004337 360 WSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQ-HGEGTWAVVDVSLDNL--RPSP 436 (760)
Q Consensus 360 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq-~~~g~w~VvDvS~d~~--~~~~ 436 (760)
|-..|- ..+.++.|+. .-.++|..+..+.| ++.|||.++||.++ +++|.++||-.|++.- .+..
T Consensus 101 Wd~~~~----~~~vle~id~--------~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~g 167 (237)
T 2pso_A 101 WDEDFV----QWKVVETLDR--------QTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLG 167 (237)
T ss_dssp TCTTBC----CCEEEEEEET--------TEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCCCS
T ss_pred HHhhhc----eEEEEEEcCC--------CcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCCCC
Confidence 998873 4456665542 22567777776665 79999999999985 7899999999999753 2236
Q ss_pred CcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004337 437 AVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (760)
Q Consensus 437 ~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ce 500 (760)
++|+..+++|++|+++++|.|+|||+-|++.. ..+|.-+..++ .-.+-..++.|+++++
T Consensus 168 ~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~----~~~~~~~l~~LR~~~~ 226 (237)
T 2pso_A 168 GVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGF----GHLCAAEVARIRNSFQ 226 (237)
T ss_dssp SEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTTTTHH----HHHHHHHHHHHHHTTS
T ss_pred cEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999987 45776653333 2222245666655443
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=108.83 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=53.8
Q ss_pred CCCCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHHH
Q 004337 94 YHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (760)
Q Consensus 94 RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (760)
.+-|+.+++..|+..|.+ ++||+..+|.+||+++||+++||++||||||.|+|+...++
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 356899999999999987 99999999999999999999999999999999999865443
No 79
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.12 E-value=2.3e-11 Score=123.76 Aligned_cols=60 Identities=17% Similarity=0.337 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCchhhhcccccchhhH
Q 004337 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELG---------------------LEPLQVKFWFQNKRTQM 145 (760)
Q Consensus 87 ~~krkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------------L~~rQVkvWFQNRRaK~ 145 (760)
++++||.|+.|++.|+.+||+.|..++||+..+|++||+.++ |++.||++||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 445688899999999999999999999999999999999988 89999999999999875
Q ss_pred H
Q 004337 146 K 146 (760)
Q Consensus 146 K 146 (760)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.3e-11 Score=100.33 Aligned_cols=46 Identities=20% Similarity=0.455 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhh
Q 004337 99 QHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQ 144 (760)
Q Consensus 99 ~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK 144 (760)
.+|+..||..|..+++|+.+++.+||..+||+.++||+||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 81
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.00 E-value=5.8e-11 Score=128.99 Aligned_cols=56 Identities=27% Similarity=0.500 Sum_probs=53.1
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHH
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (760)
++.++.++.+|+..||+.|+.++||+..+|++||+++||+++|||+||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45567899999999999999999999999999999999999999999999999986
No 82
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.99 E-value=4.1e-09 Score=105.17 Aligned_cols=148 Identities=20% Similarity=0.268 Sum_probs=117.7
Q ss_pred eeecceEEE-echhhHHHHhcC---hhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEE
Q 004337 336 ASRETAVVI-MNHISLVEILMD---VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYV 411 (760)
Q Consensus 336 AsR~~g~V~-~~~~~LVe~lmD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fL 411 (760)
.-|..++|. ..+..+.+.|+| +.+|...+ ...+||.. +|. .++|.++..|.|+ ..|||.++
T Consensus 53 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~-------~~~~vle~------~~~-~i~~~~~~~p~p~-~~RD~v~~ 117 (214)
T 1ln1_A 53 EYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV-------KELYEQEC------NGE-TVVYWEVKYPFPM-SNRDYVYL 117 (214)
T ss_dssp EEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTE-------EEEEEEEE------TTE-EEEEEEECCCTTS-CCEEEEEE
T ss_pred EEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHH-------hhEEEecc------CCC-EEEEEEEEcCCCC-CCceEEEE
Confidence 568999995 999999999999 67887776 35566754 232 4789999998886 99999999
Q ss_pred EeeeeeC-Cc--eEEEEEEecCCCC-C--CCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhh
Q 004337 412 RYCKQHG-EG--TWAVVDVSLDNLR-P--SPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNA 485 (760)
Q Consensus 412 Ryckq~~-~g--~w~VvDvS~d~~~-~--~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~a 485 (760)
|+++.++ +| .|+|+-.|++.-. | ..++|++.+++|++|++.++|.|+||++-|++.. ..+|.- |++..+.
T Consensus 118 ~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~~~ 193 (214)
T 1ln1_A 118 RQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWAAK 193 (214)
T ss_dssp EEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHHHH
T ss_pred EEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHHHHH
Confidence 9999875 66 5999999987432 1 2679999999999999999999999999999987 456644 3445556
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004337 486 FGAKRWVATLDRQCERL 502 (760)
Q Consensus 486 fgA~rWla~LqR~cerl 502 (760)
-++..++..|+++|+..
T Consensus 194 ~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 194 NGVPNFLKDMARACQNY 210 (214)
T ss_dssp THHHHHHHHHHHHHHTC
T ss_pred HHhHHHHHHHHHHHHhc
Confidence 67788888998888643
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.99 E-value=4.5e-09 Score=106.65 Aligned_cols=192 Identities=15% Similarity=0.135 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcC
Q 004337 277 PMIIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMD 356 (760)
Q Consensus 277 ~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD 356 (760)
.-+.+.+.++|.++..+. +.-|-...+.. +-.=|.+..+ +...-.-|..++|...+..|.+.|+|
T Consensus 24 ~~~~~~~~e~l~~~~~~~---~~~W~~~~~~~----gv~vy~~~~~--------~~~~~~~k~~~~v~~~~~~v~~~l~d 88 (224)
T 1jss_A 24 ASISTKLQNTLIQYHSIE---EDEWRVAKKAK----DVTVWRKPSE--------EFNGYLYKAQGVMDDVVNNVIDHIRP 88 (224)
T ss_dssp CTHHHHHHHHHHHHTTSC---GGGCEEEEEET----TEEEEEEECS--------SSSSEEEEEEEEESSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhhC---CCCCEEEEECC----CEEEEEEecc--------CCCceEEEEEEEEeCCHHHHHHHHhC
Confidence 336666666666655543 55696543210 0111222111 11223458889999999999999999
Q ss_pred hh---hHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhc-CCCCccCceeEEEEeeeeeCCceEEEEEEecCCC
Q 004337 357 VN---QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQV-PSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNL 432 (760)
Q Consensus 357 ~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v-~SPLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~ 432 (760)
.. +|-..|- ..++|..-. +.-.+.|.-+.. +-|+|..|||.++|+.+..++| ++|+-+|++.-
T Consensus 89 ~~~r~~Wd~~~~-------~~~vle~id-----~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp 155 (224)
T 1jss_A 89 GPWRLDWDRLMT-------SLDVLEHFE-----ENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWS 155 (224)
T ss_dssp STTHHHHCSSEE-------EEEEEEECS-----TTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCC
T ss_pred ccccccccccee-------eEEEEEEcC-----CCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC
Confidence 65 8877762 444544322 122556655554 3467999999999999999877 78899999743
Q ss_pred C-CCCCcceeecCccceEEecCCC--ceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004337 433 R-PSPAVRCRRRPSGCLIQEMPNG--YSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (760)
Q Consensus 433 ~-~~~~~~~~rlPSGclIq~~~nG--~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ce 500 (760)
. +..++|++.+++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+...++..|+.+|+
T Consensus 156 ~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 156 ETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3 3378999999999999999875 899999999988754 44 466777778888899999988765
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.73 E-value=6.8e-08 Score=100.95 Aligned_cols=126 Identities=12% Similarity=0.177 Sum_probs=95.0
Q ss_pred ecceEEEechhhHHHHhcChh---hHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCC--CccCceeEEEE
Q 004337 338 RETAVVIMNHISLVEILMDVN---QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSP--LVPTRESYYVR 412 (760)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--Lvp~Re~~fLR 412 (760)
|..++|...+..|.+.|+|.+ +|-..| ...+||..-.. + .++| ++..++| ++++|||..||
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~-------~~~~vle~id~---~---~ivY-~~~~p~~~~~v~~RDFV~lr 156 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY-------RSVELVQQVDE---D---DAIY-HVTSPALGGHTKPQDFVILA 156 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC-------CEEEEEEEEET---T---EEEE-EEEECCCTTCSSCEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc-------cEEEEEEEcCC---C---eEEE-EEecCCccCCCCCCEEEEEE
Confidence 888899999999999998875 555554 34444443221 1 4577 6777775 79999999999
Q ss_pred eeeee-CCce-EEEEEEecCCC--CCC-CCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhh
Q 004337 413 YCKQH-GEGT-WAVVDVSLDNL--RPS-PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQL 479 (760)
Q Consensus 413 yckq~-~~g~-w~VvDvS~d~~--~~~-~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl 479 (760)
|.+.. .+|. ++|+-+|++.- .+. .|+|++.+|+||+|+++++|.|+||++-|++- ..++..--.+
T Consensus 157 ~~r~~~~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~~~~n~ 226 (258)
T 3fo5_A 157 SRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNYVTTNV 226 (258)
T ss_dssp EEECCSSTTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHHHHHHH
T ss_pred EEEeccCCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCceEEec
Confidence 99874 4775 99999998632 222 68999999999999999999999999988873 4455444333
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.62 E-value=4.2e-07 Score=89.06 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=109.7
Q ss_pred eeecceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeee
Q 004337 336 ASRETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCK 415 (760)
Q Consensus 336 AsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyck 415 (760)
.=|..++|...+.++.+.|+|.+...+--|.+ ...+||.. .. + -.++|.++..|-| +..|||.++|+..
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~----~~~~vle~-~~----~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPDV----AASELLKA-TD----T-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTTE----EEEEEEEE-CS----S-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHhc----CEEEEEee-cC----C-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 46888999999999999999976555544433 45667776 22 2 3567878777765 7999999999999
Q ss_pred eeCCceEEEEEEecCCCCC--CCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHH
Q 004337 416 QHGEGTWAVVDVSLDNLRP--SPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVA 493 (760)
Q Consensus 416 q~~~g~w~VvDvS~d~~~~--~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla 493 (760)
...+|...|+=.+.....| ..++|++.+++|++|++ .+|.|+||++-|++..- .+|. -|++..+.-+.-..+.
T Consensus 97 ~~~~g~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~---~lvn~~~~~~~~~~l~ 171 (189)
T 3qsz_A 97 KAGDGAITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS---WLANQTVVETPFGTLK 171 (189)
T ss_dssp ECTTSCEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH---HHHHHTTTHHHHHHHH
T ss_pred ECCCCeEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH---HHHHHHHHHHHHHHHH
Confidence 9888876554333222212 26799999999999999 99999999999998763 3443 3455555666777888
Q ss_pred HHHHHHHH
Q 004337 494 TLDRQCER 501 (760)
Q Consensus 494 ~LqR~cer 501 (760)
.|+++|+.
T Consensus 172 ~L~k~~~~ 179 (189)
T 3qsz_A 172 ALRSHLRQ 179 (189)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhhh
Confidence 99887764
No 86
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.50 E-value=1.1e-08 Score=76.10 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=18.9
Q ss_pred hhhhcccccchhhHHHHHHHHH
Q 004337 132 LQVKFWFQNKRTQMKTQHERHE 153 (760)
Q Consensus 132 rQVkvWFQNRRaK~Kr~~~r~e 153 (760)
+||+|||||||+||||++.+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 6999999999999999766543
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.37 E-value=2.9e-06 Score=87.41 Aligned_cols=149 Identities=15% Similarity=0.219 Sum_probs=106.6
Q ss_pred eecceEEE-echhhHHHHhcC---hhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEE
Q 004337 337 SRETAVVI-MNHISLVEILMD---VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVR 412 (760)
Q Consensus 337 sR~~g~V~-~~~~~LVe~lmD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLR 412 (760)
-|..+.|. ..+..+.+.|+| +.+|-..+ ..++.++.|.. ++ .+.|..+..|.|+ ..|||.++|
T Consensus 75 ~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~~----~~~~vle~i~~-------~~-~i~y~~~~~p~p~-s~RDfV~~r 141 (255)
T 2e3n_A 75 LKATHAVKGVTGHEVCNYFWNVDVRNDWETTI----ENFHVVETLAD-------NA-IIIYQTHKRVWPA-SQRDVLYLS 141 (255)
T ss_dssp EEEEEEEETCCHHHHHHHHHCGGGHHHHCCSE----EEEEEEEEEET-------TE-EEEEEEECCCTTS-CCEEEEEEE
T ss_pred EEEEEEEcCCCHHHHHHHHhCcchHhhhhhhc----ceeEEEEEcCC-------CC-EEEEEEeecCCCc-CCceeEEEE
Confidence 46566665 789999999999 55676664 34445554431 12 6888888888886 889999999
Q ss_pred eeeeeC----C--ceEEEEEEecCCCC--CC-CCcceee---cCccceEEecCC--------CceEEEEEEeeeecCccc
Q 004337 413 YCKQHG----E--GTWAVVDVSLDNLR--PS-PAVRCRR---RPSGCLIQEMPN--------GYSKVTWVEHVEVDDRGV 472 (760)
Q Consensus 413 yckq~~----~--g~w~VvDvS~d~~~--~~-~~~~~~r---lPSGclIq~~~n--------G~skVtwVeH~e~d~~~v 472 (760)
++++.. + +.|+|+..|++.-. +. .++|+.. +.+|++|++..+ +.|+|||+-|++..- .+
T Consensus 142 ~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~i 220 (255)
T 2e3n_A 142 VIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WA 220 (255)
T ss_dssp EEEEECCSSTTSCCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CC
T ss_pred EEEeccccccCCCCEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-cc
Confidence 999883 3 59999999997542 11 5799984 679999998733 579999999998764 45
Q ss_pred chhhHhhhhchhhHHHHHHHHHHHHHHHHH
Q 004337 473 HNLYKQLVSTGNAFGAKRWVATLDRQCERL 502 (760)
Q Consensus 473 h~l~rpl~~Sg~afgA~rWla~LqR~cerl 502 (760)
|.- +++.....+.-..+..|+++++..
T Consensus 221 P~~---lvn~~~~~~~~~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 221 PAS---VLRAVAKREYPKFLKRFTSYVQEK 247 (255)
T ss_dssp CHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHH---HHHHHHhccccHHHHHHHHHHHHh
Confidence 543 345555667777888888877743
No 88
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=96.85 E-value=0.016 Score=58.20 Aligned_cols=198 Identities=14% Similarity=0.125 Sum_probs=117.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhh--
Q 004337 522 DGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFL-- 599 (760)
Q Consensus 522 ~Gr~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FL-- 599 (760)
-.+..++++|+..+..|-.-+.. ..+|.... ..++|+|..+...+.+ |.++ ++..-+++||+.||++|
T Consensus 19 ~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~--~~~gv~v~~~~~~~~~----~~~~--k~~~~v~~~~~~v~~~l~~ 88 (231)
T 2r55_A 19 YFQSMAAQMSEAVAEKMLQYRRD--TAGWKICR--EGNGVSVSWRPSVEFP----GNLY--RGEGIVYGTLEEVWDCVKP 88 (231)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC--CSSCEEEE--CCSSEEEEEEECSSSS----SEEE--EEEEEESSCHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC--CCCCEEEE--eCCCEEEEEEccCCCC----CcEE--EEEEEECCCHHHHHHHHHh
Confidence 34456999999999988886643 47898775 3568999988763322 3444 44455599999999999
Q ss_pred cccCccchhhhccCCCcceeEeecccCCCCCceEEEEE-eccC---C-CCCCceEEEEecccCCCCcEE-EEeecchhhh
Q 004337 600 RDENTRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLR-VNSA---N-SSQSNMLILQESCTDPTASFV-IYAPVDIVAM 673 (760)
Q Consensus 600 rd~~~R~eWdils~G~~vqe~~~ia~g~~~gn~vsllr-~~~~---~-~~~~~~liLQes~~D~sgs~v-VyAPvD~~~m 673 (760)
.|...|.+||-... ..+.+..|. .... |++ +... . -...+..+|.-...+.-|+++ +.-.||-+.+
T Consensus 89 ~d~~~r~~Wd~~~~--~~~vle~i~----~~~~--i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~~ 160 (231)
T 2r55_A 89 AVGGLRVKWDENVT--GFEIIQSIT----DTLC--VSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPLC 160 (231)
T ss_dssp --CCSHHHHCTTCS--EEEEEEECS----SSEE--EEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTTS
T ss_pred hCcchhhhhccccc--eeEEEEEcC----CCEE--EEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCCC
Confidence 89999999995332 233444442 1222 333 2211 1 123356666655565668775 5777886532
Q ss_pred hhhhcCCCCCC--ccccCCCcEEccCCCCCCCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHH
Q 004337 674 NVVLNGGDPDY--VALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVER 750 (760)
Q Consensus 674 ~~vm~G~d~~~--v~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~ 750 (760)
- ..+.+ +.++|+||.|-|.... .++|.+|.-+|+=... .|.. .+..+ +-.-+-.++++
T Consensus 161 P-----~~~~~VR~~~~~~g~~i~p~~~~----------~~~t~vt~~~~~Dp~G~iP~~--lvn~~--~~~~~~~~~~~ 221 (231)
T 2r55_A 161 P-----PKPGFVRGFNHPCGCFCEPLPGE----------PTKTNLVTFFHTDLSGYLPQN--VVDSF--FPRSMTRFYAN 221 (231)
T ss_dssp C-----CCTTCEEEEECSEEEEEEECC------------CCCEEEEEEECEECCSSCCHH--HHHHH--HHHHHHHHHHH
T ss_pred C-----CCCCCEEEEEEeeEEEEEEeCCC----------CCcEEEEEEEEeCCCCCccHH--HHHHH--HhHhHHHHHHH
Confidence 1 11233 3578999999994211 1578999877765443 3311 11111 22234477777
Q ss_pred HHHhhc
Q 004337 751 IKASLS 756 (760)
Q Consensus 751 Ik~al~ 756 (760)
++.++.
T Consensus 222 Lr~~~~ 227 (231)
T 2r55_A 222 LQKAVK 227 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777763
No 89
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=96.04 E-value=0.027 Score=56.69 Aligned_cols=174 Identities=20% Similarity=0.269 Sum_probs=99.8
Q ss_pred CCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeecccC
Q 004337 547 AHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANG 626 (760)
Q Consensus 547 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g 626 (760)
..+|..... .++|+|.++...+.+ |-+. ++..-+++||+.||++|.|...|.+||-... ..+.+-+|
T Consensus 42 ~~~W~~~~~--~~gv~vy~~~~~~~~----~~~~--k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~--~~~vle~i--- 108 (224)
T 1jss_A 42 EDEWRVAKK--AKDVTVWRKPSEEFN----GYLY--KAQGVMDDVVNNVIDHIRPGPWRLDWDRLMT--SLDVLEHF--- 108 (224)
T ss_dssp GGGCEEEEE--ETTEEEEEEECSSSS----SEEE--EEEEEESSCHHHHHHHHSSSTTHHHHCSSEE--EEEEEEEC---
T ss_pred CCCCEEEEE--CCCEEEEEEeccCCC----ceEE--EEEEEEeCCHHHHHHHHhCccccccccccee--eEEEEEEc---
Confidence 568986643 378999998653322 3333 4455569999999999999999999995331 13334444
Q ss_pred CCCCceEEEEEeccCC---CCCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCCCCCCc--cccCCCcEEccCCCCC
Q 004337 627 RDTGNCVSLLRVNSAN---SSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDGTSL 701 (760)
Q Consensus 627 ~~~gn~vsllr~~~~~---~~~~~~liLQes~~D~sgs~vVyAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~~~ 701 (760)
+..+.|--......- -...+..++.....+..|.+++.-.||-+.+ .+.+| .++++||.|-|.+..
T Consensus 109 -d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~-------~~g~VR~~~~~~g~~i~p~~~~- 179 (224)
T 1jss_A 109 -EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSET-------RPEFVRGYNHPCGWFCVPLKDS- 179 (224)
T ss_dssp -STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCC-------CTTSEECEECSEEEEEEEETTE-
T ss_pred -CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCC-------CCCCEEEEecccEEEEEEcCCC-
Confidence 233344333332221 1234555555544445566667777876543 13443 588999999983211
Q ss_pred CCCCCCCCCCCCceeEEeeehhccC-Ccccccccchhhh-hhhhhhHHHHHHHHhhc
Q 004337 702 HGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVAT-VNNLIACTVERIKASLS 756 (760)
Q Consensus 702 ~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~t-v~~li~~tv~~Ik~al~ 756 (760)
..+|.+|.-+|+=... .|.. -|.+ +-..+-.+++.++.++.
T Consensus 180 ---------~~~t~vt~~~~~Dp~G~iP~~-----lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 180 ---------PSQSLLTGYIQTDLRGMIPQS-----AVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp ---------EEEEEEEEEECEECCSCCCHH-----HHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------CCceEEEEEEEeCCCCCccHH-----HHHHHHHHhHHHHHHHHHHHHh
Confidence 1358888666554433 2311 1111 12334466777776653
No 90
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=95.76 E-value=0.094 Score=50.80 Aligned_cols=172 Identities=12% Similarity=0.120 Sum_probs=96.5
Q ss_pred CCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeecccCC
Q 004337 548 HTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANGR 627 (760)
Q Consensus 548 ~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g~ 627 (760)
++|..... .++|+|.+++..+ . .+..-++...++.||+.||++|.|...|.+||-.+ .+.--|.+
T Consensus 3 ~~W~~~~~--~~gv~v~~~~~~~-~-----~~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~-----~~~~vle~-- 67 (189)
T 3qsz_A 3 DGWSLAKD--AEGIKVYVRNVEG-S-----PLREFRGEVRLKAAADDVVKVLRDANAFRQWMPDV-----AASELLKA-- 67 (189)
T ss_dssp CCCEEEEE--ETTEEEEEECCTT-C-----SSCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTE-----EEEEEEEE--
T ss_pred CCCEEEEc--CCCEEEEEEeCCC-C-----CeEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhc-----CEEEEEee--
Confidence 57987643 5689999988632 1 12345667777999999999999999999999532 33333333
Q ss_pred CCCceEEEEEeccCCCCCC-ceEEEEecccCCCCcEEEEeecchhhhhhhhcCCCCCC--ccccCCCcEEccCCCCCCCC
Q 004337 628 DTGNCVSLLRVNSANSSQS-NMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDY--VALLPSGFAILPDGTSLHGA 704 (760)
Q Consensus 628 ~~gn~vsllr~~~~~~~~~-~~liLQes~~D~sgs~vVyAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I~Pdg~~~~~~ 704 (760)
+.+..|.-......-+-.+ +..++.....|..|.++|..-.+-+.+ ...+.+ +..+++||.|-| |.
T Consensus 68 ~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~~-----P~~~~~VR~~~~~~~~~i~p-~~----- 136 (189)
T 3qsz_A 68 TDTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDYL-----PLRKGKVRIPRAKGQWTLVP-DA----- 136 (189)
T ss_dssp CSSEEEEEEEECCSSSCCCEEEEEEEEEEECTTSCEEEEEEECTTSS-----CCCTTSEECCCEEEEEEEEE-CS-----
T ss_pred cCCceEEEEEeecCCCcCCcceEEEEEEEECCCCeEEEEEEcCCCcc-----CCCCCeEEeeEeeEEEEEEE-CC-----
Confidence 3334443333332212233 444444444555576554433221100 011232 457889999988 32
Q ss_pred CCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHHHHHhhc
Q 004337 705 NIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVERIKASLS 756 (760)
Q Consensus 705 ~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~al~ 756 (760)
++|.+|.-+|+=... .|.. + +..+ +...+-.+++++|.++.
T Consensus 137 -------~~t~vt~~~~~dp~G~iP~~-l-vn~~--~~~~~~~~l~~L~k~~~ 178 (189)
T 3qsz_A 137 -------DGVDVTYQMHASPGGSIPSW-L-ANQT--VVETPFGTLKALRSHLR 178 (189)
T ss_dssp -------SSEEEEEEEEECSCSSSCHH-H-HHHT--TTHHHHHHHHHHHHHHT
T ss_pred -------CeEEEEEEEEeCCCCCCCHH-H-HHHH--HHHHHHHHHHHHHHHhh
Confidence 368888777775543 2221 1 1111 12233467777777664
No 91
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=95.63 E-value=0.15 Score=52.08 Aligned_cols=175 Identities=23% Similarity=0.294 Sum_probs=100.6
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhH-hhhhcccCccchhhhccCCCcceeEeecc
Q 004337 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRV-FDFLRDENTRSEWDILSNGGVVQEMAHIA 624 (760)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~v-f~FLrd~~~R~eWdils~G~~vqe~~~ia 624 (760)
...+|..... .++|+|.+++.. +|.+ +-.-++..-++.+|+.+ +++|.| |.+||-..- .++.+-.|.
T Consensus 48 ~~~gW~~~~~--~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~--~~~vle~id 115 (237)
T 2pso_A 48 KFKGWVTCSS--TDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFV--QWKVVETLD 115 (237)
T ss_dssp HCCSCEEECC--SSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBC--CCEEEEEEE
T ss_pred CCCCCEEEec--CCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhc--eEEEEEEcC
Confidence 3557987743 578999999852 2222 23346666778777666 567777 999995432 234444442
Q ss_pred cCCCCCceEEEEEeccCCCCC-CceEEEEecccC-CCCcEEE-EeecchhhhhhhhcCCCCCCccccCCCcEEccCCCCC
Q 004337 625 NGRDTGNCVSLLRVNSANSSQ-SNMLILQESCTD-PTASFVI-YAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTSL 701 (760)
Q Consensus 625 ~g~~~gn~vsllr~~~~~~~~-~~~liLQes~~D-~sgs~vV-yAPvD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~~~ 701 (760)
..+.|--.......+-. .+..++.-...| ..|++|| ...|+-+.+-. .|. =-+..+++||.|-|.+.
T Consensus 116 ----~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~--~g~--VR~~~~~~g~~i~P~~~-- 185 (237)
T 2pso_A 116 ----RQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL--LGG--VRAVVMDSQYLIEPCGS-- 185 (237)
T ss_dssp ----TTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCC--CSS--EECCEEEEEEEEEECST--
T ss_pred ----CCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCC--CCc--EEEEEeccEEEEEECCC--
Confidence 23344333333322222 345555544455 3476665 44666553211 111 13568899999999531
Q ss_pred CCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHHHHHhhcc
Q 004337 702 HGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVERIKASLSC 757 (760)
Q Consensus 702 ~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~al~~ 757 (760)
++|.+|.-+|+=... .|.. + -..+...+..++.+||.++..
T Consensus 186 ----------~~t~vt~~~~~Dp~G~iP~~---l--n~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 186 ----------GKSRLTHICRIDLKGHSPEW---Y--SKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp ----------TCEEEEEEEEECCSSSCTTT---T--TTHHHHHHHHHHHHHHHTTSC
T ss_pred ----------CCEEEEEEEEeCCCCCchHH---H--HHHHHHHHHHHHHHHHHHHHh
Confidence 469999888776543 3321 2 122344555789999998864
No 92
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=95.49 E-value=0.33 Score=48.43 Aligned_cols=194 Identities=15% Similarity=0.222 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHhhhh-ccc
Q 004337 524 RKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFL-RDE 602 (760)
Q Consensus 524 r~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FL-rd~ 602 (760)
...-.++++.-...+..-+. ...+|.... ...++|.|.+++. +|. |.++ ++..-+++||+.||++| .|.
T Consensus 9 ~~~y~~~~~~~~~~~l~~~~--~~~gW~~~~-~~~~gv~vy~~~~---~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~ 78 (221)
T 3p0l_A 9 ELAYLQQGEEAMQKALGILS--NQEGWKKES-QQDNGDKVMSKVV---PDV--GKVF--RLEVVVDQPMERLYEELVERM 78 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--SCTTCEEEE-ECTTSCEEEEEEC---SSS--CEEE--EEEEEESSCHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCCCCeEee-ecCCCcEEEEEEc---CCC--ceEE--EEEEEEcCCHHHHHHHHHhcc
Confidence 34555666666666655444 356898773 1246788989884 222 4444 44555699999999999 587
Q ss_pred CccchhhhccCCCcceeEeecccCCCCCceEEEEEe--cc--CCC-CCCceEEEEecccCCCCcEEEE-eecchhhhhhh
Q 004337 603 NTRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRV--NS--ANS-SQSNMLILQESCTDPTASFVIY-APVDIVAMNVV 676 (760)
Q Consensus 603 ~~R~eWdils~G~~vqe~~~ia~g~~~gn~vsllr~--~~--~~~-~~~~~liLQes~~D~sgs~vVy-APvD~~~m~~v 676 (760)
..|.+||-..- ..+.+-+|. .+.. |++. .. ..+ ...+..+|.-...+. |++++. -.|+-+.+-
T Consensus 79 ~~r~~Wd~~~~--~~~vle~~~----~~t~--I~y~~~~~~~~~~v~~RDfv~~r~~~~~~-~~~vi~~~Sv~~~~~P-- 147 (221)
T 3p0l_A 79 EAMGEWNPNVK--EIKVLQKIG----KDTF--ITHELAAEAAGNLVGPRDFVSVRCAKRRG-STCVLAGMATDFGNMP-- 147 (221)
T ss_dssp GGTTTSCTTCS--EEEEEEECS----SSEE--EEEEEECC---CCSCCEEEEEEEEEEECS-SCEEECCEECCCTTSC--
T ss_pred chhhhcCcchh--eEEEEEecC----CCeE--EEEEeeccccCCccCCceEEEEEEEEEcC-CeEEEEEEeccCCCCC--
Confidence 89999995331 234444442 2222 3332 11 112 233555555544443 555554 445543211
Q ss_pred hcCCCCCCc--cccCCCcEEccCCCCCCCCCCCCCCCCCceeEEeeehhccC-Ccccccccchhhhh-hhhhhHHHHHHH
Q 004337 677 LNGGDPDYV--ALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATV-NNLIACTVERIK 752 (760)
Q Consensus 677 m~G~d~~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv-~~li~~tv~~Ik 752 (760)
..+.+| .++++||.|-|.+.+ ..+|.+|.-+|+=... .|.. -|..+ ..-+-.+++.+|
T Consensus 148 ---~~~g~VR~~~~~~g~~i~p~~~~----------~~~t~vt~~~~~Dp~G~iP~~-----lvn~~~~~~~~~~~~~Lr 209 (221)
T 3p0l_A 148 ---EQKGVIRAEHGPTCMVLHPLAGS----------PSKTKLTWLLSIDLKGWLPKS-----IINQVLSQTQVDFANHLR 209 (221)
T ss_dssp ---CCTTSEECEECSCEEEEEEETTE----------EEEEEEEEEECEECCSSCCHH-----HHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCeEEEeccceEEEEEECCCC----------CCcEEEEEEEEecCCCCCCHH-----HHHHHHHHHHHHHHHHHH
Confidence 123343 579999999994321 1368888888775443 2221 11111 233446888888
Q ss_pred Hhhc
Q 004337 753 ASLS 756 (760)
Q Consensus 753 ~al~ 756 (760)
.++.
T Consensus 210 ~~~~ 213 (221)
T 3p0l_A 210 KRLE 213 (221)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 8876
No 93
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=95.48 E-value=0.17 Score=45.06 Aligned_cols=140 Identities=10% Similarity=-0.003 Sum_probs=82.3
Q ss_pred cceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004337 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (760)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~ 418 (760)
.+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+.. |..--+. +.. + +.+.-+..++....+
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~~~~----g~~~~~~--~~~--~--g~~~~~~~~~~~~~~ 71 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAREGA----RTRSRWV--AVA--M--GKKVRWLEEEEWDDE 71 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEEETT----EEEEEEE--EEE--T--TEEEEEEEEEEEETT
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEeCCC----ccEEEEE--EEe--C--CceEEEEEEEEEcCC
Confidence 34567778999999999999999999865 33556654322 3211111 111 1 223334455544323
Q ss_pred CceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHH
Q 004337 419 EGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQ 498 (760)
Q Consensus 419 ~g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR~ 498 (760)
+...+. . .+++ ++ + .+=.-+-+++.++| |+|+|..+.+....-+..++.+++..-+.=+.++.++.|.+.
T Consensus 72 ~~~i~~-~-~~~g----~~-~--~~~~~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 141 (147)
T 2d4r_A 72 NLRNRF-F-SPEG----DF-D--RYEGTWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEER 141 (147)
T ss_dssp TTEEEE-E-EEEE----SC-S--EEEEEEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEE-E-eccC----Ch-h--heEEEEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221 1 1221 11 0 00012345777888 999999988876444556667776666667788999999888
Q ss_pred HHHH
Q 004337 499 CERL 502 (760)
Q Consensus 499 cerl 502 (760)
+|..
T Consensus 142 ~e~~ 145 (147)
T 2d4r_A 142 VLAA 145 (147)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8864
No 94
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=95.02 E-value=0.18 Score=50.57 Aligned_cols=194 Identities=9% Similarity=0.113 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeeccCChhhHh-hhhcccC
Q 004337 525 KSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVF-DFLRDEN 603 (760)
Q Consensus 525 ~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf-~FLrd~~ 603 (760)
+.-++.++.....|-.-+. ...+|..... ..++++|.++...+ .|.+. ++..-+++||..|| ++|.|..
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~~~-~~~g~~vy~~~~~~-----~g~~~--k~~~~v~~~~~~v~~~~~~d~~ 90 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFEKN-NEYGDTVYTIEVPF-----HGKTF--ILKTFLPCPAELVYQEVILQPE 90 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEEEE-CTTCCEEEEEEETT-----TEEEE--EEEEEESSCHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEEEe-cCCCCEEEEEecCC-----CCceE--EEEEEecCCHHHHHHHHHhCcc
Confidence 4444555554444444333 2468987642 23578888876531 23344 44444599999999 9999999
Q ss_pred ccchhhhccCCCcceeEeecccCCCCCceEEEEEeccC---CC-CCCceEEEEecccCCCCcEEEEeecchhhhhhhhcC
Q 004337 604 TRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSA---NS-SQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNG 679 (760)
Q Consensus 604 ~R~eWdils~G~~vqe~~~ia~g~~~gn~vsllr~~~~---~~-~~~~~liLQes~~D~sgs~vVyAPvD~~~m~~vm~G 679 (760)
.|.+||-..- .++.+-+|. .++.| +..+... .. ...+.+++.-...+..+-+++...|+-+.+-
T Consensus 91 ~r~~Wd~~~~--~~~vle~~~----~~t~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P----- 158 (229)
T 1em2_A 91 RMVLWNKTVT--ACQILQRVE----DNTLI-SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP----- 158 (229)
T ss_dssp HHTTTCTTEE--EEEEEEEET----TTEEE-EEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEEECCCTTSC-----
T ss_pred chhhcccccc--eEEEEEecC----CCeEE-EEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEecccCCCCC-----
Confidence 9999995331 234444442 22333 2222211 11 2234555555445544455666677765321
Q ss_pred CCCC--CccccCCCcEEccCCCCCCCCCCCCCCCCCceeEEeeehhccC-Ccccccccchh-hh-hhhhhhHHHHHHHHh
Q 004337 680 GDPD--YVALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSV-AT-VNNLIACTVERIKAS 754 (760)
Q Consensus 680 ~d~~--~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv-~t-v~~li~~tv~~Ik~a 754 (760)
..+. -+.++++||.|-|.... .++|.+|.-+|+=... .| ..+ .. +...+-.++++++.+
T Consensus 159 ~~~~~VR~~~~~~g~~i~p~~~~----------~~~t~vt~~~~~Dp~G~iP------~~l~n~~~~~~~~~~~~~Lr~~ 222 (229)
T 1em2_A 159 PTHKYVRGENGPGGMIVLKSASN----------PRVCTFVWILNTDLKGRLP------RYLIHQSLAATMFEFAFHLRQR 222 (229)
T ss_dssp CCTTSEECEECSEEEEEEECSSC----------TTCEEEEEEECEECCSSSC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeeeecccEEEEEecCCC----------CCcEEEEEEEEECCCCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 24578999999983211 1468888877765443 33 121 11 233455677777776
Q ss_pred hc
Q 004337 755 LS 756 (760)
Q Consensus 755 l~ 756 (760)
+.
T Consensus 223 ~~ 224 (229)
T 1em2_A 223 IS 224 (229)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 95
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=94.61 E-value=0.26 Score=48.46 Aligned_cols=174 Identities=14% Similarity=0.197 Sum_probs=99.0
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecc-CChhhHhhhhcccCccchhhhccCCCcceeEeecc
Q 004337 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLP-VPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIA 624 (760)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia 624 (760)
...+|..... .++|+|..+...+ ..+..-++..-++ +||+.||++|.|...|.+||-.. .+.--|-
T Consensus 26 ~~~~W~~~~~--~~~v~v~~~~~~~------~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~-----~~~~vle 92 (214)
T 1ln1_A 26 AGADWQLLVE--TSGISIYRLLDKK------TGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV-----KELYEQE 92 (214)
T ss_dssp TTTTCEEEEE--ETTEEEEEEEETT------TTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTE-----EEEEEEE
T ss_pred CCCCcEEEEE--CCCeEEEEeccCC------CCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHH-----hhEEEec
Confidence 4568987754 4579999887532 2345667777887 99999999999999999999532 1111121
Q ss_pred cCCCCCceEEEEEeccCCCCCC-ceEEEEecc-cCCCCc--E-EEEeecchhhhhhhhcCCCCCC--ccccCCCcEEccC
Q 004337 625 NGRDTGNCVSLLRVNSANSSQS-NMLILQESC-TDPTAS--F-VIYAPVDIVAMNVVLNGGDPDY--VALLPSGFAILPD 697 (760)
Q Consensus 625 ~g~~~gn~vsllr~~~~~~~~~-~~liLQes~-~D~sgs--~-vVyAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I~Pd 697 (760)
. .|+.|.-......-+-.+ +..++.... .|..|. + ++.-.|+.+.+ ...+.+ +..+++||.|-|.
T Consensus 93 ~---~~~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~-----P~~~~~VR~~~~~~~~~i~p~ 164 (214)
T 1ln1_A 93 C---NGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQL-----GERSGVIRVKQYKQSLAIESD 164 (214)
T ss_dssp E---TTEEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTB-----CCCTTSEEECCEEEEEEEEEC
T ss_pred c---CCCEEEEEEEEcCCCCCCceEEEEEEEEecccCCCeEEEEEEecccCCCC-----CCCCCcEEEEEEEEEEEEecC
Confidence 1 123333333332112223 344444332 344553 3 44556765431 112344 5578999999884
Q ss_pred CCCCCCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHHHHHhhc
Q 004337 698 GTSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVERIKASLS 756 (760)
Q Consensus 698 g~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~al~ 756 (760)
+. ++|.+|.-.|+=... .|.. -+..+ +...+-.++++++.++.
T Consensus 165 ~~------------~~t~v~~~~~~Dp~G~iP~~--l~n~~--~~~~~~~~l~~l~k~~~ 208 (214)
T 1ln1_A 165 GK------------KGSKVFMYYFDNPGGQIPSW--LINWA--AKNGVPNFLKDMARACQ 208 (214)
T ss_dssp SS------------SSEEEEEEEEECCSSCCCHH--HHHHH--HHTHHHHHHHHHHHHHH
T ss_pred CC------------CceEEEEEEEECCCCcccHH--HHHHH--HHHHhHHHHHHHHHHHH
Confidence 31 468888887776543 2311 11111 23344566777777653
No 96
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=94.13 E-value=0.28 Score=50.94 Aligned_cols=196 Identities=21% Similarity=0.276 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC-Cccc-ccCchhhHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEE
Q 004337 487 GAKRWVATLDRQCERLASVMATNIPTG-EVGV-ITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVM 564 (760)
Q Consensus 487 gA~rWla~LqR~cerla~~~~~~~p~~-d~~~-i~~~~Gr~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~ 564 (760)
|-||.-.++.|-=-||.-- .|-+. +..+ ...++-+.+=+.|+.-.+.+...- ....+|..... .++|+|.
T Consensus 9 ~~~r~~~a~ar~~~r~~r~---~~~~~~~~~~p~~~~w~~~~~~~l~~~n~~al~~l---~~~~gW~~~~~--~~gv~Vy 80 (258)
T 3fo5_A 9 GERRYREASARKKIRLDRK---YIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKML---VAKDNWVLSSE--ISQVRLY 80 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHH---TCSCCCTTTSCSEEECCGGGHHHHHHHHHHHHHHH---HTCSCCEEEEE--ETTEEEE
T ss_pred chhhhhhhhhhhhhcccce---EEEEcccCCCCcccccCcccceecccCCHHHHHhh---hccCCCEEEec--CCCeEEE
Confidence 3466666666654455332 22222 2111 223466777777777666655542 24689987643 4689999
Q ss_pred EccCCCCCCCCCccEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCcceeEeecccCCCCCceEEEEEeccC---
Q 004337 565 TRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSA--- 641 (760)
Q Consensus 565 ~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g~~~gn~vsllr~~~~--- 641 (760)
++.. + | .++-++..-+++||+.||++|.|...|.+||-.. ...+.+-+|. ..+.|- +....
T Consensus 81 ~~~~---~----~-~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~--~~~~vle~id----~~~ivY--~~~~p~~~ 144 (258)
T 3fo5_A 81 TLED---D----K-FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHY--RSVELVQQVD----EDDAIY--HVTSPALG 144 (258)
T ss_dssp EEEC---S----S-CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTC--CEEEEEEEEE----TTEEEE--EEEECCCT
T ss_pred EEEC---C----C-ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhc--cEEEEEEEcC----CCeEEE--EEecCCcc
Confidence 8642 2 2 3566777778999999999999999999999533 1234444542 123332 33221
Q ss_pred CCCCC-ceEEEEecccC-CCCc-EEEE-eecchhhhhhhhcCCCCCCc--cccCCCcEEccCCCCCCCCCCCCCCCCCce
Q 004337 642 NSSQS-NMLILQESCTD-PTAS-FVIY-APVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDGTSLHGANIGEAASGGSL 715 (760)
Q Consensus 642 ~~~~~-~~liLQes~~D-~sgs-~vVy-APvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsl 715 (760)
..-.+ +..+|.-...+ ..|. +||. -.|+.+.+- .-+.+| ..+|+||.|-|.|. ++|.
T Consensus 145 ~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~P-----p~~g~VR~~~~~sg~~I~P~~~------------~~t~ 207 (258)
T 3fo5_A 145 GHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHR-----ETPEYRRGETLCSGFCLWREGD------------QLTK 207 (258)
T ss_dssp TCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSC-----CCTTSEECCCSSEEEEEEEEET------------TEEE
T ss_pred CCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCC-----CCCCCEEEEEcCcEEEEEECCC------------CCEE
Confidence 12233 34444433233 3554 5543 345543211 123334 68999999999432 3566
Q ss_pred eEEeeehh
Q 004337 716 LTVAFQIL 723 (760)
Q Consensus 716 lTvaFQil 723 (760)
||-=.|+-
T Consensus 208 VtY~~q~d 215 (258)
T 3fo5_A 208 VSYYNQAT 215 (258)
T ss_dssp EEEEESCC
T ss_pred EEEEEeeC
Confidence 66554544
No 97
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=91.11 E-value=3.8 Score=38.98 Aligned_cols=146 Identities=13% Similarity=0.084 Sum_probs=84.0
Q ss_pred ecceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeee
Q 004337 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQH 417 (760)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~ 417 (760)
..+.+|...+..+-+.+-|.++|-+.+|.+ ..++|+..+.. + +.+++.+.-. ..++-|.-|+...-
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~----~~~~v~~~~~~----~----~~~~~~~~~~--G~~~~~~s~~~~~~ 73 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPT----EKVEILEEGQG----Y----QVVRLHVDVA--GEINTWTSRRDLDP 73 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSE----EEEEEEEEETT----E----EEEEEEEEET--TEEEEEEEEEEEET
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCccc----ceEEEEecCCC----E----EEEEEEEecC--CEEEEEEEEEEEeC
Confidence 456677888999999999999999999976 45666664321 1 2233332211 22343444444333
Q ss_pred CCceEEEEEEecCCCCCCCCcceeecCccc-eEEecCCCceEEEEEEeeeecCcccchhhHhhh---------hchhhHH
Q 004337 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGC-LIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLV---------STGNAFG 487 (760)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~rlPSGc-lIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~---------~Sg~afg 487 (760)
++.. +.. ..++. +++|. .+ .|. -+.+.++|.|+|+|.-++++....+..++.++. ..-+.=+
T Consensus 74 ~~~~-i~~-~~~~~--~gpf~---~~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~ 145 (172)
T 3tfz_A 74 ARRV-IAY-RQLET--APIVG---HM-SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERN 145 (172)
T ss_dssp TTTE-EEE-EEEEC--CTTEE---EE-EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHH
T ss_pred CCCE-EEE-EEeeC--CCChh---hc-EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcc
Confidence 2222 111 12211 01111 11 122 256677788999999999998777666665543 2222333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004337 488 AKRWVATLDRQCERLASV 505 (760)
Q Consensus 488 A~rWla~LqR~cerla~~ 505 (760)
.+.-|+.|.+.+|+.+..
T Consensus 146 ~~~~L~~lk~~aE~~~~~ 163 (172)
T 3tfz_A 146 SVADLNAVLGEAERRVRA 163 (172)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhh
Confidence 456788888888877654
No 98
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=90.92 E-value=5.1 Score=38.56 Aligned_cols=144 Identities=11% Similarity=0.110 Sum_probs=80.7
Q ss_pred ecceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeee
Q 004337 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQH 417 (760)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~ 417 (760)
..+.+|.-.+..+-+.+-|.++|-+.+|.+ ...++++.+. +. ..+...+++..--. .++|..-|.+ -
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~----~~~~~~~~~~-----~~-~~~~l~~~~~~~G~-~~~~ts~~~~--d 72 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEY----AEAEILRQDG-----DG-FDFRLKTRPDANGR-VWEWVSHRVP--D 72 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTE----EEEEEEEEET-----TE-EEEEEEECCCTTSC-CCEEEEEEEE--E
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhhe----eEEEEEecCC-----CE-EEEEEEEEecCCCe-EEEEEEEEEE--c
Confidence 456677778899999999999999999977 4456666431 11 11111222222211 2233333322 1
Q ss_pred CCceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcc-cc-hhhHhhhhchhhHHHHHHHHHH
Q 004337 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRG-VH-NLYKQLVSTGNAFGAKRWVATL 495 (760)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~-vh-~l~rpl~~Sg~afgA~rWla~L 495 (760)
.++..+.... +.. ++| +.+=...-+.+.++| |+|+|.-+.++++.. +. ...+..+.. ..+..|+.|
T Consensus 73 ~~~~~I~~~~-l~~---gPf---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~av~~----~~~~~L~~L 140 (169)
T 3tvq_A 73 KGSRTVRAHR-VET---GPF---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPFDNAHMTAHLNT----TTRANMERI 140 (169)
T ss_dssp GGGTEEEEEE-SSC---TTE---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHH----HHHHHHHHH
T ss_pred CCCcEEEEEE-cCC---CCh---hheeeEEEEEECCCC-EEEEEEEEEEecCCCcccHHHHHHHHHh----hHHHHHHHH
Confidence 2232222211 111 122 233345567888888 999999999997542 11 122333322 235568999
Q ss_pred HHHHHHHHHHH
Q 004337 496 DRQCERLASVM 506 (760)
Q Consensus 496 qR~cerla~~~ 506 (760)
++.+|+.+...
T Consensus 141 K~~aE~~~~~~ 151 (169)
T 3tvq_A 141 KKIIEDRHREG 151 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhhhhhc
Confidence 99999887653
No 99
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=90.57 E-value=1.4 Score=40.53 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=84.4
Q ss_pred ecceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeee
Q 004337 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQH 417 (760)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~ 417 (760)
+.+..|...+..+-+.+.|.++|-+.+|.+. .++|++.+..|. |. -+.+++.+- .-+.++-|..|++.+-
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~----~~~v~~~~~~~g--~~--~~~~~~~~~--~~~~~~~~~~~v~~~~ 74 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWIT----GMRTWNGRVDGA--VS--TVDAEAQVG--FSFLREKFATRVRRDK 74 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCC----CCCEEEEEEETT--EE--EEEEEEECS--TTSSCCEEEEEEEEET
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcC----eeEEEEecCCCC--Cc--eEEEEEEEE--ecceeEEEEEEEEEcC
Confidence 3456777889999999999999999999773 346666443221 11 144455442 2355666778887643
Q ss_pred CCceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHH
Q 004337 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDR 497 (760)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR 497 (760)
.+ ..|.-.++++.. ..+...++ +++.++| |+|++.-++|... .++..+...-+.-.+++-+.++.+
T Consensus 75 ~~--~~i~~~~~~G~f-~~~~g~w~------f~~~~~g-t~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~f~~ 140 (148)
T 1t17_A 75 DA--RSIDVSLLYGPF-KRLNNGWR------FMPEGDA-TRVEFVIEFAFKS----ALLDAMLAANVDRAAGKLIACFEA 140 (148)
T ss_dssp TT--CEEEEEESSTTS-SCEEEEEE------EEEETTE-EEEEEEEEECCSC----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEECCCCh-hccEEEEE------EEECCCC-eEEEEEEEEEECc----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 223333444311 11122333 4567788 9999998888752 234444433334466777777766
Q ss_pred HHHHH
Q 004337 498 QCERL 502 (760)
Q Consensus 498 ~cerl 502 (760)
.|+.+
T Consensus 141 r~~~~ 145 (148)
T 1t17_A 141 RAQQL 145 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 100
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.14 E-value=0.23 Score=41.79 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccc
Q 004337 101 QIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 139 (760)
Q Consensus 101 Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQ 139 (760)
-.+.|+..|+..+.+.+.....|+.+..|+..|||-||-
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999994
No 101
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=88.11 E-value=0.1 Score=45.44 Aligned_cols=43 Identities=12% Similarity=0.379 Sum_probs=30.5
Q ss_pred CCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhccccc
Q 004337 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQN 140 (760)
Q Consensus 95 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQN 140 (760)
..||.++....-..+.... .....++|+++|+++..|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHH
Confidence 4688888766655553220 123568999999999999999753
No 102
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=86.46 E-value=22 Score=33.60 Aligned_cols=143 Identities=11% Similarity=0.132 Sum_probs=80.4
Q ss_pred ecceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhh--cCCCCccCceeEEEEeee
Q 004337 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQ--VPSPLVPTRESYYVRYCK 415 (760)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~--v~SPLvp~Re~~fLRyck 415 (760)
..+.+|.-.+..+-+.+-|.++|-+.||.+ ...+|++.+ |+ .+.+.|. +--- -.++-+..|+..
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~----~~~~vl~~~--~~------~~~~rl~~~~~~~--G~~~~~ts~~~~ 71 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEY----ASVEVLGRD--DD------KVTFRLTMHPDAD--GKVWSWVSERVA 71 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSE----EEEEEEEEC--SS------EEEEEEEECCCTT--SCCCEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCc----eEEEEEecC--CC------EEEEEEEEEeccC--ceEEEEEEEEEE
Confidence 456778889999999999999999999866 456777753 11 1233332 2111 134555566654
Q ss_pred eeCCceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHH
Q 004337 416 QHGEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATL 495 (760)
Q Consensus 416 q~~~g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~L 495 (760)
. .++..+ +..+ +.+++| +.+=...-+.+.++| |+|+|.-+.++++.....+ +.+..-+-=..+.-|+.|
T Consensus 72 d-~~~~~I--~~~~--~~~gPf---~~l~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~--~~~~~~~~~~~~~~L~~l 140 (159)
T 3tl1_A 72 D-PVTRTV--RAQR--VETGPF---QYMNIVWEYAETAEG-TVMRWTQDFAMKPDAPVDD--AWMTDNINRNSRTQMALI 140 (159)
T ss_dssp E-TTTTEE--EEEE--SSCTTE---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCH--HHHHHHHHHHHHHHHHHH
T ss_pred c-CCCCEE--EEEE--ccCCCh---hhccCEEEEEECCCC-EEEEEEEEEEecCCCCCCH--HHHHHHHHhhHHHHHHHH
Confidence 3 333232 2221 111222 333344556778774 9999999999976521111 001111111223357777
Q ss_pred HHHHHHHHHH
Q 004337 496 DRQCERLASV 505 (760)
Q Consensus 496 qR~cerla~~ 505 (760)
++.+|+.+..
T Consensus 141 K~~~E~~~~~ 150 (159)
T 3tl1_A 141 RDRIEQAAGE 150 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhhhhh
Confidence 7777776643
No 103
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.14 E-value=1.5 Score=35.97 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=32.4
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 004337 150 ERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (760)
Q Consensus 150 ~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~ 211 (760)
++.....+..+.+.|..+|..|... ..+|+.|+..||+-+.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~---------------------i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKER---------------------ADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHh
Confidence 3566778888899999999988874 4778888888887654
No 104
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=85.99 E-value=13 Score=34.97 Aligned_cols=136 Identities=13% Similarity=0.124 Sum_probs=78.9
Q ss_pred ecceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeee
Q 004337 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQH 417 (760)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~ 417 (760)
..+.+|.-.+..+-+.+.|.++|...||..+.- ...+ +|....+.+++.+-. ...|+-|..||...-
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~------~~~~-----~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~ 76 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKL------VDLG-----NNAYRWEMEKVGVDK--HAIQSVYACTYHADK 76 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE------EEEE-----TTEEEEEECCBSSGG--GCBCCEEEEEEEEET
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE------EEcC-----CCceEEEEEEEeeee--EEEEEEEEEEEEEcC
Confidence 346678889999999999999999999965432 2211 233344545665433 234888999997654
Q ss_pred CCceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHH
Q 004337 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATL 495 (760)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~L 495 (760)
++. .+... .+++ ++. +.+-.-.-+++.++|.|+|+|.-+.|.. ..+..++..++..-+.-.+++-+.+.
T Consensus 77 ~~~-~I~~~-~~~g----~~~--~~l~g~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~af 145 (161)
T 3p9v_A 77 EAG-KITWS-PIKG----EGN--GVVSGSWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVDTY 145 (161)
T ss_dssp TTT-EEEEE-ECTT----STT--EEEEEEEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEE-EecC----ccc--eeEEEEEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 22221 2222 221 1111233457788888999999988886 12333443333222233445555555
No 105
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=85.34 E-value=1.5 Score=38.49 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 004337 142 RTQMKTQHERHENTQLRTENEKLRADNMRYRE 173 (760)
Q Consensus 142 RaK~Kr~~~r~e~~~l~~ene~L~~en~~l~e 173 (760)
|++.|+ +.....+..+.+.|..||..|+.
T Consensus 29 rSR~kr---k~r~~e~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 29 KSRDKA---KMRNLETQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 33445556666777777666544
No 106
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.59 E-value=2.1 Score=34.75 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=29.5
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 004337 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEI 210 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el 210 (760)
+.....+..+.+.|..+|..|... ...|+.|+..|++.|
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~---------------------i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSE---------------------VTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 556777888888888888887773 467888888877764
No 107
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.43 E-value=1.7 Score=37.63 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHH----HHHHHHhh
Q 004337 196 EHHLRLENARLREEID----RISAIAAK 219 (760)
Q Consensus 196 ~~~L~~EN~~Lk~el~----r~~~~~~~ 219 (760)
...|..||.+||+|.. |+.++++|
T Consensus 50 ~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4569999999999986 55555554
No 108
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=81.20 E-value=5.7 Score=35.01 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=46.2
Q ss_pred CCCchhhhcccccchhhHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 004337 128 GLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLR 207 (760)
Q Consensus 128 gL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk 207 (760)
||+..+|.-|=|-||+=.-|.-....-..-..+.+.|..++..+.. +.++|+.||.+++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~---------------------e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ---------------------QVEQLKQEVSRLA 75 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 8888888888777776544444444444444556667777666655 5578888888888
Q ss_pred HHHHHHHH
Q 004337 208 EEIDRISA 215 (760)
Q Consensus 208 ~el~r~~~ 215 (760)
.|++.+..
T Consensus 76 ~e~d~~k~ 83 (90)
T 2wt7_B 76 RERDAYKV 83 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876654
No 109
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=78.26 E-value=2.1 Score=34.86 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 004337 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEI 210 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el 210 (760)
......|..+.+.|..+|..|... ...|+.|+..|++.|
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~---------------------v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAST---------------------ANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 455666777777777777776663 355666666666554
No 110
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=76.41 E-value=3.9 Score=35.15 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHhHHHHH
Q 004337 154 NTQLRTENEKLRADNMRYR 172 (760)
Q Consensus 154 ~~~l~~ene~L~~en~~l~ 172 (760)
...+....+.|..||..|+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555533
No 111
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=76.29 E-value=6.2 Score=32.23 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=17.7
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHH
Q 004337 151 RHENTQLRTENEKLRADNMRYREA 174 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~ea 174 (760)
......|..+.+.|..+|..|...
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888877663
No 112
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=72.36 E-value=3.1 Score=42.12 Aligned_cols=199 Identities=14% Similarity=0.188 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCccEE-EEEEEeecc-CChhhHhhhhcccCc
Q 004337 527 MLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVL-SAATSFWLP-VPPKRVFDFLRDENT 604 (760)
Q Consensus 527 ll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl-~A~tS~wLp-v~p~~vf~FLrd~~~ 604 (760)
+-++.+..+..+-..+ ....+|..... .++|+|..++..+ . |.++ .-++..-++ ++|+.||++|.|...
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~~~--~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~ 98 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLVVE--EGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVDV 98 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEEEE--ETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEEEe--CCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcch
Confidence 3334444444444322 23468987743 4679999988632 2 2221 123334445 999999999999999
Q ss_pred cchhhhccCCCcceeEeecccCCCCCceEEEEEeccCC-CCCCceEEEEecccC----CCC--c-EEEEeecchhhhhhh
Q 004337 605 RSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSAN-SSQSNMLILQESCTD----PTA--S-FVIYAPVDIVAMNVV 676 (760)
Q Consensus 605 R~eWdils~G~~vqe~~~ia~g~~~gn~vsllr~~~~~-~~~~~~liLQes~~D----~sg--s-~vVyAPvD~~~m~~v 676 (760)
|.+||-..- .++.+-.|. .++.|--......- -...+..++.....+ ..| . +++.-.|+-+.+-
T Consensus 99 r~~Wd~~~~--~~~vle~i~----~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P-- 170 (255)
T 2e3n_A 99 RNDWETTIE--NFHVVETLA----DNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAP-- 170 (255)
T ss_dssp HHHHCCSEE--EEEEEEEEE----TTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSC--
T ss_pred Hhhhhhhcc--eeEEEEEcC----CCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCC--
Confidence 999994321 123333331 22223333332211 223355555543322 333 3 3444456554211
Q ss_pred hcCCCCCCcc-----ccCCCcEEccC-CC-CCCCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHH
Q 004337 677 LNGGDPDYVA-----LLPSGFAILPD-GT-SLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTV 748 (760)
Q Consensus 677 m~G~d~~~v~-----lLPSGF~I~Pd-g~-~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv 748 (760)
..+.+|- .|.+||.|.|- |. .... ..++|.+|.-.|+=... .|..-. ..+ +...+-.++
T Consensus 171 ---~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~------~~~~t~vt~~~~~Dp~G~iP~~lv--n~~--~~~~~~~~l 237 (255)
T 2e3n_A 171 ---LNNRCVRAKINVAMICQTLVSPPEGNQEISR------DNILCKITYVANVNPGGWAPASVL--RAV--AKREYPKFL 237 (255)
T ss_dssp ---CCSSSEECEEEEEEEEEEEEC---CCCCCCG------GGEEEEEEEEEEEECSSCCCHHHH--HHH--HHHHHHHHH
T ss_pred ---CCCCCEEEEEEeeeeeeeEeccCCCCccccc------CCCcEEEEEEEEeCCCCccCHHHH--HHH--HhccccHHH
Confidence 1122222 36789989883 22 1110 12578888887775543 332111 111 123334566
Q ss_pred HHHHHhh
Q 004337 749 ERIKASL 755 (760)
Q Consensus 749 ~~Ik~al 755 (760)
++++..+
T Consensus 238 ~~L~k~v 244 (255)
T 2e3n_A 238 KRFTSYV 244 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 113
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=68.97 E-value=13 Score=29.44 Aligned_cols=40 Identities=35% Similarity=0.447 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHH
Q 004337 154 NTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRIS 214 (760)
Q Consensus 154 ~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~ 214 (760)
...++.+++.|.+.|.+|.+.+ ++-+.|...|++|++++.
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L---------------------~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETL---------------------KEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhh
Confidence 3457777888888888888866 567889999999998863
No 114
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=68.40 E-value=5.8 Score=35.41 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCC
Q 004337 177 NASCPNCGGPTA 188 (760)
Q Consensus 177 ~~~C~~C~g~~~ 188 (760)
...||.||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 457999997643
No 115
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=68.13 E-value=3.1 Score=43.03 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHH
Q 004337 197 HHLRLENARLREEID 211 (760)
Q Consensus 197 ~~L~~EN~~Lk~el~ 211 (760)
++|+.||++||+.|.
T Consensus 46 ~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 46 ADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 447788888887755
No 116
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=63.08 E-value=12 Score=31.55 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=14.0
Q ss_pred ccchhhHH-HHHHHHHhHHHHHHHHHHHHhHHH
Q 004337 139 QNKRTQMK-TQHERHENTQLRTENEKLRADNMR 170 (760)
Q Consensus 139 QNRRaK~K-r~~~r~e~~~l~~ene~L~~en~~ 170 (760)
|||-++-. +..+.+....|..+...|..++..
T Consensus 15 qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 15 QNRAAQRAFRKRKEDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544332 222233344455555555554443
No 117
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=61.59 E-value=2.4 Score=37.74 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=33.4
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 004337 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~ 211 (760)
-+++-.|....+++..||.+++..-... | +-..++..+.++|+.||.+|++|-+
T Consensus 36 IqEYl~LE~~~s~le~e~~rlr~~~~~~----~---~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 36 IKEYLELEKSLSRMEDENNRLRLESKRL----D---ARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc----h---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666767776666642211 1 1123556678888888888888854
No 118
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=57.88 E-value=13 Score=30.45 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 004337 199 LRLENARLREEIDRIS 214 (760)
Q Consensus 199 L~~EN~~Lk~el~r~~ 214 (760)
|..||..|+.|+.++.
T Consensus 42 L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 42 LLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 119
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=55.35 E-value=9.1 Score=30.02 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=31.5
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccc
Q 004337 94 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 139 (760)
Q Consensus 94 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQ 139 (760)
|..||+++.......+... ........++|+++|+++.+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 3468898877775555433 22122256899999999999999964
No 120
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=50.88 E-value=10 Score=25.63 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 004337 197 HHLRLENARLREEIDRIS 214 (760)
Q Consensus 197 ~~L~~EN~~Lk~el~r~~ 214 (760)
.+|+..|++||+|+.-+.
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 579999999999987553
No 121
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=50.74 E-value=16 Score=32.67 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=36.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchh
Q 004337 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT 143 (760)
Q Consensus 93 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRa 143 (760)
+|.+||.++...+-..+..+.... ..++|+++|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 466799999988877775554443 236899999999999999766544
No 122
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.89 E-value=20 Score=28.45 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=8.2
Q ss_pred chhhhHHHHHHHHHHHHH
Q 004337 195 DEHHLRLENARLREEIDR 212 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el~r 212 (760)
+...|+.||+.||.++..
T Consensus 20 d~eaLk~E~~eLk~k~~~ 37 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEA 37 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 123
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=49.25 E-value=13 Score=31.60 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=31.4
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhccc
Q 004337 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWF 138 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWF 138 (760)
|+.+..|+.++....-..+... . ...++|+++|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 4456679998866555556432 1 25688999999999999995
No 124
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=48.88 E-value=18 Score=37.40 Aligned_cols=38 Identities=34% Similarity=0.472 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 004337 157 LRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 157 l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 215 (760)
++.+++.|.+.|..|.+++ ++++.|+.+||+|++++..
T Consensus 59 L~~ql~~L~arNe~L~~~L---------------------k~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETL---------------------KEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhcC
Confidence 4455555555566555543 5688899999999998765
No 125
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=48.14 E-value=2.6 Score=38.27 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=39.7
Q ss_pred CCCchhhhcccccchhhHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 004337 128 GLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLR 207 (760)
Q Consensus 128 gL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk 207 (760)
||++.|+.-.=|-||+-.-|.-.+..-..-.++.+.|..++ ..+..+.++|..||..|+
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~---------------------~~L~~e~e~L~~En~~l~ 85 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQK---------------------AELQQEVEKLASENASMK 85 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------TTTSSTTTTTTSTTSHHH
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 78888877665555544433333333333334444454443 345567788888888888
Q ss_pred HHHHHHHH
Q 004337 208 EEIDRISA 215 (760)
Q Consensus 208 ~el~r~~~ 215 (760)
.|++++..
T Consensus 86 ~E~~~lk~ 93 (107)
T 3a5t_A 86 LELDALRS 93 (107)
T ss_dssp HTTTSSSS
T ss_pred HHHHHHHH
Confidence 88776543
No 126
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=47.95 E-value=53 Score=25.01 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=16.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHH
Q 004337 195 DEHHLRLENARLREEIDRISAIA 217 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el~r~~~~~ 217 (760)
++|.|..-.+.|++|+.|+...+
T Consensus 25 deqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHH
Confidence 55667777788888888876643
No 127
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=47.47 E-value=1.6e+02 Score=26.58 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=63.5
Q ss_pred ceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEE--EEeeeee
Q 004337 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYY--VRYCKQH 417 (760)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~f--LRyckq~ 417 (760)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..| .. ...+.+ +.-|.+.-+. ++|...-
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~~-------~~---~~~~~~--~~g~~~~~~~~~~~~~~~~ 71 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGED-------KY---KADLQI--GIAAVKGKYDAIIEVTDIK 71 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEETT-------EE---EEEEEE--CCGGGCEEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCCC-------eE---EEEEEE--EeeeEEEEEEEEEEEEecC
Confidence 4567778999999999999999999865 345555311 11 111111 1112222222 2444444
Q ss_pred CCceEEEEEEecCCCCCCCCcceeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhh
Q 004337 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVS 481 (760)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~ 481 (760)
+...|++.-..-+. + ++. ..---+-+.+..+|.|+|+|.-.+++... +..+..+++.
T Consensus 72 ~~~~~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~~ 128 (162)
T 2pcs_A 72 PPYHYKLLVNGEGG--P-GFV---NAEGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRMLG 128 (162)
T ss_dssp TTTEEEEEEEEEET--T-EEE---EEEEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHHH
T ss_pred CCcEEEEEEEecCC--C-ccE---EEEEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHHH
Confidence 45555544333221 1 111 11112335666778899999888877533 3445555553
No 128
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=47.15 E-value=11 Score=35.91 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=28.0
Q ss_pred EEEEEEeeccCChhhHhhhhcccCccchhhh
Q 004337 580 LSAATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (760)
Q Consensus 580 l~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (760)
.+...|+-+..||+.||+|++|...-.+|.-
T Consensus 27 ~~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 27 QSRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred cceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 3568899999999999999999999999983
No 129
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=45.13 E-value=13 Score=27.22 Aligned_cols=42 Identities=12% Similarity=0.294 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccch
Q 004337 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 142 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRR 142 (760)
.++.++...+...+... ....++|+.+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 36677766666666543 2356899999999999999997543
No 130
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=44.68 E-value=23 Score=25.97 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=6.3
Q ss_pred HHHHHHHHhHHH
Q 004337 159 TENEKLRADNMR 170 (760)
Q Consensus 159 ~ene~L~~en~~ 170 (760)
+||++|+.+...
T Consensus 7 ~ENekLhk~ie~ 18 (37)
T 1t6f_A 7 KENEKLHKEIEQ 18 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666555433
No 131
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=43.77 E-value=62 Score=28.04 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 004337 197 HHLRLENARLREEIDRISAIAA 218 (760)
Q Consensus 197 ~~L~~EN~~Lk~el~r~~~~~~ 218 (760)
.+|..|++.||++++++..++.
T Consensus 56 e~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 56 EQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5577778888888887777654
No 132
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=43.16 E-value=1.3e+02 Score=28.30 Aligned_cols=112 Identities=10% Similarity=0.127 Sum_probs=60.7
Q ss_pred cceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004337 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (760)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~ 418 (760)
.+..|...+.++-++|.|-..| +-+|.++. +++++ .|.+|+.-|++..+ . . ..+| .++.|-...-
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~---s~e~~-eg~~~~~vGsvR~~--g----g---~v~E-rl~~~D~~~~ 70 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIK---SCKKV-GGGGGYSVGARRLL--N----G---EFLD-TLIAYSEIER 70 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCC---CEEEE-SSCCTTCTTCEEEE--T----T---TEEE-EEEEEETTTT
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceE---EEEEE-ecCCCCCCCCEEEE--C----C---EEEE-EEEEEcCCCc
Confidence 3456677889999999999999 88997754 33444 34444445787665 1 1 1233 2222221000
Q ss_pred CceEEEEEEecCCCCCCCCcceeecCccceEEecC-CCceEEEEEEeeeecC
Q 004337 419 EGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMP-NGYSKVTWVEHVEVDD 469 (760)
Q Consensus 419 ~g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~-nG~skVtwVeH~e~d~ 469 (760)
-=+|-|++-.+ +..--..+..=+=.-+.+.+ +|.|.|+|--.++..+
T Consensus 71 ~~sY~ii~g~l----~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~ 118 (160)
T 3p51_A 71 RIMYSMDEGPS----PVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS 118 (160)
T ss_dssp EEEEEEEECST----TSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESC
T ss_pred EEEEEEecCCC----cccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH
Confidence 01455554211 10000012222222355555 7899999998888764
No 133
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=42.93 E-value=40 Score=29.42 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=14.5
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHh
Q 004337 193 SFDEHHLRLENARLREEIDRISAIAA 218 (760)
Q Consensus 193 ~~e~~~L~~EN~~Lk~el~r~~~~~~ 218 (760)
..++.+|+.+...|++|++.+..+..
T Consensus 49 e~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 49 TAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666555433
No 134
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=41.40 E-value=22 Score=28.02 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=18.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhh
Q 004337 194 FDEHHLRLENARLREEIDRISAIAAKY 220 (760)
Q Consensus 194 ~e~~~L~~EN~~Lk~el~r~~~~~~~~ 220 (760)
.+++-|+.||..||+||+.-+..++|.
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 355667788888888887666655543
No 135
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=40.71 E-value=23 Score=30.02 Aligned_cols=48 Identities=8% Similarity=0.129 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
.+++.|..+|...|-.. ..-.++|+.+|+++..|+.+...-|.|.|+.
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47788888887765433 2356899999999999998887655555554
No 136
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.92 E-value=94 Score=27.83 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=36.0
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCC----C--CC-CCcchhhhHHHHHHHHHHHHHHHHHHhh
Q 004337 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTA----I--GE-MSFDEHHLRLENARLREEIDRISAIAAK 219 (760)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~----~--~~-~~~e~~~L~~EN~~Lk~el~r~~~~~~~ 219 (760)
+++...|+.|+++|+.++..|.-.+.+..-...-+|.. + -. .....++.+.+...|++|++++...+.+
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666555554322111111110 0 00 1123456677788888888888775544
No 137
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=39.33 E-value=29 Score=24.64 Aligned_cols=40 Identities=8% Similarity=0.172 Sum_probs=29.2
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhccccc
Q 004337 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQN 140 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQN 140 (760)
.++.++...+...+... . ...++|+.+|++...|+.|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 47787776665556433 2 2568999999999999999754
No 138
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A
Probab=38.36 E-value=2.3e+02 Score=25.83 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred cceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004337 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (760)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~ 418 (760)
.+..|...+.++-++|.|-+.|.+-+|.| ...+++ .| |. .|.+. +.
T Consensus 6 ~si~I~Ap~~~VW~~l~d~~~~~~w~p~v----~~~~~~-~G--G~--------------------------vR~~~-~~ 51 (146)
T 3f08_A 6 TSMEIFGSTEQVWQLIGGFNSLPDWLPYI----PSSKLT-EG--GR--------------------------VRHLA-NP 51 (146)
T ss_dssp EEEEESSCHHHHHHHHCSTTCHHHHCTTC----CEEEEE-GG--GT--------------------------EEEEE-CT
T ss_pred EEEEEeCCHHHHHHHHhccccHHHhCCCe----EEEEEe-CC--Ce--------------------------EEEEE-eC
Q ss_pred CceEEEEE-EecCCCCCC-------CCcceeecCccceEEe-cCCCceEEEEEEeeeecCccc---chhhHhhhhchhh
Q 004337 419 EGTWAVVD-VSLDNLRPS-------PAVRCRRRPSGCLIQE-MPNGYSKVTWVEHVEVDDRGV---HNLYKQLVSTGNA 485 (760)
Q Consensus 419 ~g~w~VvD-vS~d~~~~~-------~~~~~~rlPSGclIq~-~~nG~skVtwVeH~e~d~~~v---h~l~rpl~~Sg~a 485 (760)
+|.|+.-- ..+|.-.-. .....+..=+=.-+.+ -.+|+|.|+|.-.++-+.-.- -..++.+|..|+.
T Consensus 52 ~G~~~~Erl~~~D~~~~~~~y~iv~g~~~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p~g~~~~~~~~~~~~~~~~~L~ 130 (146)
T 3f08_A 52 DGETIIERLEVFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVAVSDEEAINLVHGIYSDGLK 130 (146)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEEEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEESSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEEeCCCCEEEEEEecCCCceeEEEEEEEEEEecCCCcEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHHH
No 139
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=37.08 E-value=13 Score=32.51 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=24.9
Q ss_pred EEEEeeccCChhhHhhhhcccCccchhh
Q 004337 582 AATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
...+..++.||+.||++|.|..+..+|.
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~~~~w~ 31 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEGLKPYL 31 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHGGGC
T ss_pred EEEEEEeCCCHHHHHHHHhChhhhhhhc
Confidence 3467788999999999999999999996
No 140
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=36.35 E-value=53 Score=29.39 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHH
Q 004337 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (760)
.+++.|...+...|... ..-.++|..+|+++..|+.|.+.-|.+.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47888888888875443 23568999999999999999987776666544
No 141
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=36.21 E-value=19 Score=37.08 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 004337 199 LRLENARLREEIDRISAIA 217 (760)
Q Consensus 199 L~~EN~~Lk~el~r~~~~~ 217 (760)
...++..|++|.+|+..++
T Consensus 41 ~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 41 LESEVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3467788888888888753
No 142
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=35.55 E-value=1.3e+02 Score=26.13 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=7.3
Q ss_pred hhhHHHHHHHHHHHH
Q 004337 197 HHLRLENARLREEID 211 (760)
Q Consensus 197 ~~L~~EN~~Lk~el~ 211 (760)
..|+.||.+|++-.+
T Consensus 55 ~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 55 ARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554333
No 143
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=35.42 E-value=24 Score=43.64 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 004337 143 TQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAI 216 (760)
Q Consensus 143 aK~Kr~~~r~e~~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 216 (760)
++.+.+..+++...++.+++++..|++.+.+++.... .++......|..||+.|+++++.+...
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~----------~~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK----------HETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666677777777777777666542211 234456667888999999988887743
No 144
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=34.58 E-value=59 Score=28.94 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHHHHH
Q 004337 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (760)
.+++.|...+...|-.. ..-.++|..+|+++..|+.+...-|.+.|+...+
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888775433 2356899999999999999988777666665433
No 145
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.50 E-value=77 Score=34.80 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=19.1
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHH
Q 004337 193 SFDEHHLRLENARLREEIDRISAI 216 (760)
Q Consensus 193 ~~e~~~L~~EN~~Lk~el~r~~~~ 216 (760)
+.+.++|+.||++|+++++.+...
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhh
Confidence 347789999999999999876543
No 146
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.41 E-value=46 Score=27.85 Aligned_cols=15 Identities=33% Similarity=0.663 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHH
Q 004337 199 LRLENARLREEIDRI 213 (760)
Q Consensus 199 L~~EN~~Lk~el~r~ 213 (760)
|..||..|++++..+
T Consensus 48 l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 48 TTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 147
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=33.68 E-value=1e+02 Score=26.53 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 004337 197 HHLRLENARLREEIDRISAIA 217 (760)
Q Consensus 197 ~~L~~EN~~Lk~el~r~~~~~ 217 (760)
.+|+.||..|++-++.+..++
T Consensus 51 ~~LkeEN~~L~el~~~~~~la 71 (79)
T 2zxx_A 51 ARLRKENKDLAEVAEHVQYMA 71 (79)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467788887777766655543
No 148
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=33.64 E-value=34 Score=24.66 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHH
Q 004337 195 DEHHLRLENARLREEIDRISAIA 217 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el~r~~~~~ 217 (760)
.++.|..+|..|++|..|+.+++
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh
Confidence 45678999999999999988864
No 149
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=32.60 E-value=16 Score=33.15 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=26.2
Q ss_pred EEEEEeeccCChhhHhhhhcccCccchhh
Q 004337 581 SAATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 581 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
....+..++.||++||++|.|..+..+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 45678889999999999999999999996
No 150
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.43 E-value=63 Score=30.34 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=12.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHH
Q 004337 194 FDEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 194 ~e~~~L~~EN~~Lk~el~r~~~ 215 (760)
.+...|+.++..|+.++.++.+
T Consensus 110 ~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 110 KEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666655544
No 151
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=32.41 E-value=94 Score=31.09 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHH---HHHHhhhcCccccc
Q 004337 155 TQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRI---SAIAAKYVGKPVVN 227 (760)
Q Consensus 155 ~~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~---~~~~~~~~g~~~~~ 227 (760)
..--.||++|+.+...+.+ +...|+.||..||+-.+.+ ..++.+.+|.+..+
T Consensus 111 ~eaLeEN~~Lh~~ie~l~e---------------------Ei~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~ 165 (209)
T 2wvr_A 111 YEALKENEKLHKEIEQKDN---------------------EIARLKKENKELAEVAEHVQYMAELIERLNGEPLDN 165 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 3344566666666665555 3456777777777555444 34445555655433
No 152
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.16 E-value=1.1e+02 Score=26.52 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Q 004337 196 EHHLRLENARLREEIDRISAIAA 218 (760)
Q Consensus 196 ~~~L~~EN~~Lk~el~r~~~~~~ 218 (760)
..++..|.++||+|..++..+|.
T Consensus 47 ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 47 IEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888877654
No 153
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=32.07 E-value=14 Score=34.02 Aligned_cols=28 Identities=21% Similarity=0.067 Sum_probs=25.2
Q ss_pred EEEEeeccCChhhHhhhhcccCccchhh
Q 004337 582 AATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
...++.+|.||++||++|.|..+..+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3467888999999999999999999996
No 154
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=31.40 E-value=23 Score=32.08 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=25.3
Q ss_pred EEEeeccCChhhHhhhhcccCccchhhh
Q 004337 583 ATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (760)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (760)
..|..+|.||+.||+++.|-.+..+|--
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p 32 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVP 32 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCS
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCC
Confidence 4678899999999999999999999974
No 155
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=30.61 E-value=26 Score=32.15 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=22.9
Q ss_pred CCchhhhcccccchhhHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHh
Q 004337 129 LEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREAL 175 (760)
Q Consensus 129 L~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~ea~ 175 (760)
|...+.+.|-+|+-...-+..-.++..+-++..++|+.|+..|.+.+
T Consensus 41 l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~L 87 (121)
T 3mq7_A 41 FQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKL 87 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666654443333333333333444556666666655544
No 156
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=30.43 E-value=29 Score=27.17 Aligned_cols=47 Identities=9% Similarity=-0.070 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
.+++.+...+...|-.. ..-.++|..+|+++..|+.+...-|.+.|+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888999998876433 234689999999999999887654444443
No 157
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=30.23 E-value=60 Score=27.72 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 004337 197 HHLRLENARLREEIDRISA 215 (760)
Q Consensus 197 ~~L~~EN~~Lk~el~r~~~ 215 (760)
..|..||..|+.+++.+..
T Consensus 46 ~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 46 LELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554443
No 158
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=29.89 E-value=23 Score=32.75 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=26.1
Q ss_pred EEEEEeeccCChhhHhhhhcccCccchhh
Q 004337 581 SAATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 581 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
....|+.++.||+.||+|+.|..+-.+|-
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~ 33 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLM 33 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHS
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHh
Confidence 34578889999999999999999999996
No 159
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=29.69 E-value=60 Score=27.85 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=20.9
Q ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHh
Q 004337 140 NKRTQMKTQHERHENTQLRTENEKLRADNMRYREAL 175 (760)
Q Consensus 140 NRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~ea~ 175 (760)
+||.|++-.+.+.+.+.|+.-.+.|+.-...|.+.+
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi 48 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMV 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 355566655556666666666666665555555543
No 160
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=29.13 E-value=29 Score=30.70 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=25.1
Q ss_pred EEEEEeeccCChhhHhhhhcccCccchh
Q 004337 581 SAATSFWLPVPPKRVFDFLRDENTRSEW 608 (760)
Q Consensus 581 ~A~tS~wLpv~p~~vf~FLrd~~~R~eW 608 (760)
....+..++.||++||++|-|..+..+|
T Consensus 6 ~i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 6 IAQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 3456788899999999999999999999
No 161
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=28.85 E-value=3.3e+02 Score=24.67 Aligned_cols=137 Identities=12% Similarity=0.049 Sum_probs=68.2
Q ss_pred cceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004337 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (760)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fLRyckq~~ 418 (760)
.+..|...+..+-+.+.|.+.|-+.+|.+ ..++++.. +... +.++ + |.=+.+.-+..||+....
T Consensus 8 ~s~~I~ap~e~V~~~~~D~e~~p~w~p~~----~~v~~~~~-------~~~~-~~~~--~--~~G~~~~~~~~~v~e~~p 71 (155)
T 3ggn_A 8 DAVTIGKPAEQLYAVWRDLPGLPLLMTHL----RSVEVLDD-------KRSR-WTVE--A--PAPLGTVSWEAELTADEP 71 (155)
T ss_dssp EEEEESSCHHHHHHHHHCGGGHHHHSTTC----CEEEECSS-------SEEE-EEEE--C--CTTTCEEEEEEEEEEEET
T ss_pred EEEEEcCCHHHHHHHHhCHHHhHHHhhhc----eEEEEecC-------CeeE-EEEE--e--cCCcceEEEEEEEEEecC
Confidence 45667778999999999999999999876 34555542 1111 1111 1 221245556677777655
Q ss_pred CceEEEEEEecCCCCCCCCcceeecCccceEEecC-CCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHH
Q 004337 419 EGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMP-NGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDR 497 (760)
Q Consensus 419 ~g~w~VvDvS~d~~~~~~~~~~~rlPSGclIq~~~-nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgA~rWla~LqR 497 (760)
+... +-.++++... .+.. -+-.++.+ +|.|+|++.-+.+....-+-.++-+++. -.+++++.+-
T Consensus 72 ~~~i--~~~~~~g~~~-~~~g------~~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~~~----~~~~~~v~~~-- 136 (155)
T 3ggn_A 72 GKRI--AWRSLPGARI-ENSG------EVLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARMFN----QEPSQQLRDD-- 136 (155)
T ss_dssp TTEE--EEEECTTCSS-CEEE------EEEEEECSSSSCEEEEEEEEEC--------------------CHHHHHHHH--
T ss_pred CCEE--EEEECCCCCc-ceEE------EEEEEECCCCCceEEEEEEEEECCCcHHHHHHHHHhh----hhHHHHHHHH--
Confidence 5442 2334443210 1111 12346674 5689999977766543233334333321 1146665543
Q ss_pred HHHHHHHHHh
Q 004337 498 QCERLASVMA 507 (760)
Q Consensus 498 ~cerla~~~~ 507 (760)
++|+..++-
T Consensus 137 -l~r~k~~~e 145 (155)
T 3ggn_A 137 -LMRFKREQE 145 (155)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 555555444
No 162
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.60 E-value=90 Score=35.00 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=13.8
Q ss_pred chhhhHHHHHHHHHHHHHHHH
Q 004337 195 DEHHLRLENARLREEIDRISA 215 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el~r~~~ 215 (760)
..++|+.|++.+++|+.++-.
T Consensus 559 ~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777766554
No 163
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=28.50 E-value=31 Score=30.81 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=24.4
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004337 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
..+..++.||++||+.|-|..+..+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 467788999999999999999999994
No 164
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=27.85 E-value=8.3 Score=35.07 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 004337 184 GGPTAIGEMSFDEHHLRLENARLREEIDR 212 (760)
Q Consensus 184 ~g~~~~~~~~~e~~~L~~EN~~Lk~el~r 212 (760)
++....+++..+.++|+.||..||+++.+
T Consensus 5 r~~~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 5 KPDKTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
No 165
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.60 E-value=1.5e+02 Score=25.72 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHH
Q 004337 156 QLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRIS 214 (760)
Q Consensus 156 ~l~~ene~L~~en~~l~ea~~~~~C~~C~g~~~~~~~~~e~~~L~~EN~~Lk~el~r~~ 214 (760)
.--.||++|..+...+.+ +...|+.||..||+-.+.+.
T Consensus 43 eaL~EN~~Lh~~ie~l~e---------------------Ei~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDN---------------------EIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666555 33568888888887666554
No 166
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.53 E-value=59 Score=29.14 Aligned_cols=47 Identities=9% Similarity=0.112 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHHH
Q 004337 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (760)
Q Consensus 96 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (760)
.+++.|..++. .|-. ...-.++|+.+|+++..|+.+.+.-|.+.|+.
T Consensus 109 ~L~~~~r~v~~-~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-----GYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTT-----TCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 47777777777 3332 22456899999999999998877555555543
No 167
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.24 E-value=56 Score=33.77 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=9.8
Q ss_pred HhHHHHHHHHHHHHhHHHHHH
Q 004337 153 ENTQLRTENEKLRADNMRYRE 173 (760)
Q Consensus 153 e~~~l~~ene~L~~en~~l~e 173 (760)
+...+.+.|++|.++.+.++.
T Consensus 62 ql~~L~arNe~L~~~Lk~ar~ 82 (251)
T 3m9b_A 62 RIDSLAARNSKLMETLKEARQ 82 (251)
T ss_dssp HHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 168
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.03 E-value=67 Score=28.06 Aligned_cols=46 Identities=9% Similarity=0.093 Sum_probs=34.7
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhH
Q 004337 94 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQM 145 (760)
Q Consensus 94 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~ 145 (760)
...+|+.|.++|...++.. .-.++|+.+|+++..|+.+.++=+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3459999999998876433 237899999999999998876444333
No 169
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=24.70 E-value=48 Score=28.38 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHH
Q 004337 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (760)
Q Consensus 95 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (760)
..+|+.|.+.|...++... -.++|+.+|+++..|+.+..+=+.|.+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4589999999998654432 468999999999999988765444444
No 170
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=24.12 E-value=35 Score=30.92 Aligned_cols=28 Identities=4% Similarity=0.146 Sum_probs=24.4
Q ss_pred EEEEeeccCChhhHhhhhcccCccchhh
Q 004337 582 AATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
-..+.-++.||++||+.|-|+.+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456778999999999999999999994
No 171
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.81 E-value=68 Score=26.62 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=35.6
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHHH
Q 004337 94 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (760)
Q Consensus 94 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (760)
-..+|+.|.+.|...++. ..-.++|+.+|+++..|+.+.++=+.|.+.
T Consensus 19 ~~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 346999999999885432 245689999999999999887655544443
No 172
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.38 E-value=3.2 Score=39.73 Aligned_cols=29 Identities=3% Similarity=-0.104 Sum_probs=22.1
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCHH
Q 004337 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDK 118 (760)
Q Consensus 90 rkr~RtrfT~~Ql~~LE~~F~~~~~Ps~~ 118 (760)
.||.|+.|+.+|++.|+..|+.+++|...
T Consensus 136 ~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 136 GSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -----EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 47888999999999999999999998743
No 173
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=23.36 E-value=3.9e+02 Score=23.72 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=32.1
Q ss_pred ceEEEechhhHHHHhcChhhHhhhhccccccceEeeEeecccCCCCCCeeeee
Q 004337 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVM 392 (760)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm 392 (760)
+..|...+.++-+.|.|...|.+-+|.+ ..++++..+ . ..-|++..+
T Consensus 7 si~I~ap~e~Vw~~l~d~~~~~~w~p~v----~~~~~~~g~-~-~~~G~~r~~ 53 (151)
T 2le1_A 7 SVEVAAPAADVWTLVGDFSAIHRWHPQV----SAPTLRGAS-P-HTPGAERVF 53 (151)
T ss_dssp EEEESSCHHHHHHHHTTSGGGGGTCTTC----CCEEEESSC-T-TSTTCEEEE
T ss_pred EEEecCCHHHHHHHHhCcCcHHHhcCCc----eEEEEECCC-C-CCCCeEEEE
Confidence 4556778999999999999998889975 345555533 1 224565433
No 174
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.13 E-value=77 Score=25.11 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 004337 196 EHHLRLENARLREEIDRISA 215 (760)
Q Consensus 196 ~~~L~~EN~~Lk~el~r~~~ 215 (760)
..+|..||..|++++..+..
T Consensus 31 v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 31 VAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45577778888887776654
No 175
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=22.59 E-value=40 Score=31.69 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=26.3
Q ss_pred EEEEEeeccCChhhHhhhhcccCccchhh
Q 004337 581 SAATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 581 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
....|+.++.||+.||+++.|-....+|-
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~ 34 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIF 34 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHC
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhC
Confidence 45678899999999999999999999996
No 176
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=22.41 E-value=76 Score=24.93 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=34.3
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccchhhHH
Q 004337 94 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (760)
Q Consensus 94 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (760)
...+++.|...|...++.. .-.++|+.+|+++..|+.+.++-+.|.+
T Consensus 9 ~~~L~~~e~~il~~~~~g~------s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLVQDK------TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 3468999999998853322 3468999999999999988765444443
No 177
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=22.36 E-value=1.1e+02 Score=30.73 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=27.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhcccccc
Q 004337 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNK 141 (760)
Q Consensus 93 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQNR 141 (760)
.++.|+.+|+..|.. ....+.+|++-.+|+..+.++
T Consensus 41 g~R~y~~~~~~~l~~-------------i~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 41 SYRYYTDSQLIHLDL-------------IKSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp CCEEEETGGGGHHHH-------------HHHHHHTTCCHHHHHHHTTSC
T ss_pred CccccCHHHHHHHHH-------------HHHHHHCCCCHHHHHHHHHhC
Confidence 455689999888843 333588999999999998876
No 178
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=22.07 E-value=32 Score=30.88 Aligned_cols=27 Identities=7% Similarity=0.252 Sum_probs=24.5
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004337 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
..+..++.||++||+.|-|..+..+|-
T Consensus 11 ~~~~~i~ap~e~Vw~~ltd~~~~~~W~ 37 (143)
T 1xn6_A 11 KQTIVFNASIQKVWSVVSTAEGIASWF 37 (143)
T ss_dssp EEEEEESSCHHHHHHTTSCSHHHHTTS
T ss_pred EEEEEEcCCHHHHHHHHhCHhHHHHhc
Confidence 467788999999999999999999996
No 179
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=21.94 E-value=51 Score=29.85 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=24.6
Q ss_pred EEEEeeccCChhhHhhhhcccCccchhh
Q 004337 582 AATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
...++-++.||++||++|.|-.+-.+|.
T Consensus 4 v~~si~I~ap~e~Vw~~l~d~~~~~~w~ 31 (151)
T 2le1_A 4 LRRSVEVAAPAADVWTLVGDFSAIHRWH 31 (151)
T ss_dssp EEEEEEESSCHHHHHHHHTTSGGGGGTC
T ss_pred EEEEEEecCCHHHHHHHHhCcCcHHHhc
Confidence 3567888999999999999988888996
No 180
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.83 E-value=1.2e+02 Score=28.19 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=24.7
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhccccc
Q 004337 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQN 140 (760)
Q Consensus 92 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgL~~rQVkvWFQN 140 (760)
..+..|+.+++..|... ...+.+|++-.+|+..+..
T Consensus 50 ~g~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 50 KGDRIFNEEALKYLEMI-------------LCLKNTGMPIQKIKQFIDW 85 (148)
T ss_dssp TCCEEBCHHHHHHHHHH-------------HHHHTTTCCHHHHHHHHHH
T ss_pred CCCeecCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHh
Confidence 45667999999998543 2236677777777777663
No 181
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.43 E-value=1.9e+02 Score=23.23 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=19.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhh
Q 004337 195 DEHHLRLENARLREEIDRISAIAAK 219 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el~r~~~~~~~ 219 (760)
..++|...+....+|+.|+.+++..
T Consensus 26 kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 26 KIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888889989999998886654
No 182
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=21.41 E-value=57 Score=29.55 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=10.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHH
Q 004337 195 DEHHLRLENARLREEIDRISAI 216 (760)
Q Consensus 195 e~~~L~~EN~~Lk~el~r~~~~ 216 (760)
|..+|+.|...||++++.+..+
T Consensus 80 En~~l~~E~~~lk~k~e~L~~~ 101 (107)
T 3a5t_A 80 ENASMKLELDALRSKYEALQNF 101 (107)
T ss_dssp TTSHHHHTTTSSSSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665543
No 183
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=21.31 E-value=80 Score=29.14 Aligned_cols=47 Identities=13% Similarity=0.257 Sum_probs=35.3
Q ss_pred CCCCCCCChHHHHHHHHHH-hcCCCCCHHHHHHHHH----Hh--CCCchhhhccccc
Q 004337 91 KKRYHRHTQHQIQEMEAFF-KECPHPDDKQRKELSR----EL--GLEPLQVKFWFQN 140 (760)
Q Consensus 91 kr~RtrfT~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~----~L--gL~~rQVkvWFQN 140 (760)
+++|.++|.+|...+-..+ +.++..... +||+ ++ +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5677889999999999999 667666544 4555 67 6777888888644
No 184
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.63 E-value=85 Score=22.74 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 004337 196 EHHLRLENARLREEIDRISAIA 217 (760)
Q Consensus 196 ~~~L~~EN~~Lk~el~r~~~~~ 217 (760)
++.|..+|..|++|..|+.+++
T Consensus 10 VEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 10 VXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHH
Confidence 4568888888888888888754
No 185
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A
Probab=20.60 E-value=34 Score=31.39 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=24.7
Q ss_pred EEEEeeccCChhhHhhhhcccCccchhh
Q 004337 582 AATSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
...+..++.||++||++|-|..+..+|-
T Consensus 12 i~~~~~i~Ap~e~Vw~altd~~~~~~W~ 39 (152)
T 2kew_A 12 ITKSITLEAPIQKVWETVSTSEGIAKWF 39 (152)
T ss_dssp EEEEEEECSCHHHHHHHSSSSHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHhCHHHHHHhc
Confidence 3467788999999999999999999994
No 186
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5
Probab=20.47 E-value=31 Score=30.62 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.2
Q ss_pred EEeeccCChhhHhhhhcccCccchhh
Q 004337 584 TSFWLPVPPKRVFDFLRDENTRSEWD 609 (760)
Q Consensus 584 tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (760)
.+..++.||++||++|-|..+..+|-
T Consensus 7 ~~~~i~ap~e~Vw~altd~~~~~~W~ 32 (147)
T 1z94_A 7 LHRVLSAPPERVYRAFLDPLALAKWL 32 (147)
T ss_dssp EEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhcc
Confidence 45578999999999999999999994
Done!