BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004339
(760 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 77 IDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 135
+DPR A+A+ +LG D A++ ++ A L ++ E N+G ++++G+
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA-----EAWYNLGNAYYKQGD 118
Query: 136 FESAHQSFKDAL 147
++ A + ++ AL
Sbjct: 119 YDEAIEYYQKAL 130
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
Query: 77 IDPR 80
+DPR
Sbjct: 132 LDPR 135
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413
G ++G +D + + + + E S + W NL + Y+ QG++ A++ YQ L
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSA-----EAWYNLGNAYYKQGDYDEAIEYYQKAL 96
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 387 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 446
+ W NL + Y+ QG++ A++ YQ L A+ L +Y+ + + +
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59
Query: 447 RAIHLAPSNYTLRFDAGVAMQK 468
+A+ L P + ++ G A K
Sbjct: 60 KALELDPRSAEAWYNLGNAYYK 81
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+Y LG K GD+ A+ ++K LE+YP+N E LG+ Y + G ++A E +KA +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 77 IDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGE 116
+ P +A+A+ +LG D A++ ++ A L E
Sbjct: 72 LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+Y LG K GD+ A+ ++K LE+YP+N E LG+ Y + G ++A E +KA +
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Query: 77 IDPRDAQAFIDLG 89
+ P +A+A +LG
Sbjct: 106 LYPNNAEAKQNLG 118
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 45 PDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALD 102
P N E LG+ Y + G ++A E +KA ++ P +A+A+ +LG D A++
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 103 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
++ A L E N+G ++++G+++ A + ++ AL
Sbjct: 65 YYQKALELYPNN-----AEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 56
+Y LG K GD+ A+ ++K LE+YP+N E + LG+
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGN 119
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 387 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 446
+ W NL + Y+ QG++ A++ YQ L Y +A+ L +Y+ + + +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--YPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 447 RAIHLAPSNYTLRFDAGVAMQK 468
+A+ L P+N ++ G A K
Sbjct: 68 KALELYPNNAEAWYNLGNAYYK 89
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 329 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 388
++A E Y + + + +N A G ++G +D + + + + E ++ +
Sbjct: 25 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-----LYPNNAEA 79
Query: 389 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 423
W NL + Y+ QG++ A++ YQ L + N +A+
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAK 114
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A E +KA +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 77 IDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTL 110
+DP +A+A+ +LG D A++ ++ A L
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A E +KA +
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Query: 77 IDPRDAQAFIDLG 89
+DP +A+A +LG
Sbjct: 106 LDPNNAEAKQNLG 118
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 45 PDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALD 102
P N E LG+ Y + G ++A E +KA ++DP +A+A+ +LG D A++
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 103 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
++ A L + E N+G ++++G+++ A + ++ AL
Sbjct: 65 YYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 56
+Y LG K GD+ A+ ++K LE+ P+N E + LG+
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 387 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 446
+ W NL + Y+ QG++ A++ YQ L +A+ L +Y+ + + +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 447 RAIHLAPSNYTLRFDAGVAMQK 468
+A+ L P+N ++ G A K
Sbjct: 68 KALELDPNNAEAWYNLGNAYYK 89
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 330 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 389
++A E Y + + +N A G ++G +D + + + + E + + W
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----EAW 80
Query: 390 INLAHVYFAQGNFALAMKMYQNCLR 414
NL + Y+ QG++ A++ YQ L
Sbjct: 81 YNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A E +KA +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 77 IDPRDAQAFIDLG 89
+DP +A+A +LG
Sbjct: 72 LDPNNAEAKQNLG 84
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 387 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 446
+ W NL + Y+ QG++ A++ YQ L +A+ L +Y+ + + +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 447 RAIHLAPSNYTLRFDAGVAMQK 468
+A+ L P+N + + G A QK
Sbjct: 68 KALELDPNNAEAKQNLGNAKQK 89
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 56
+Y LG K GD+ A+ ++K LE+ P+N E + LG+
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 45 PDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALD 102
P N E LG+ Y + G ++A E +KA ++DP +A+A+ +LG D A++
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 103 AFKTARTL 110
++ A L
Sbjct: 65 YYQKALEL 72
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
LG K GD++ A+ ++K LE+ P+N LG+ Y + G +KA E +KA ++DP
Sbjct: 15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Query: 80 RDAQAFIDLGELLI-SSDTGAALDAFKTARTL 110
+A+A+ G D A++ ++ A L
Sbjct: 75 NNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+Y LG K GD++ A+ ++K LE+ P+N + G+ Y + G +KA E +KA +
Sbjct: 46 WYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
Query: 77 IDPRDAQAFIDLG 89
+DP +A+A +LG
Sbjct: 106 LDPNNAKAKQNLG 118
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 45 PDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALD 102
P N E K LG+ Y + G +KA E +KA ++DP +A A+ +LG D A++
Sbjct: 5 PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE 64
Query: 103 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
++ A L + + G ++++G+++ A + ++ AL
Sbjct: 65 YYQKALEL-----DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKAL 104
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 387 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 446
+ W NL + Y+ QG++ A++ YQ L +A L +Y+ +Q +
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELD--PNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 447 RAIHLAPSNYTLRFDAGVAMQK 468
+A+ L P+N + G A K
Sbjct: 68 KALELDPNNAKAWYRRGNAYYK 89
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 56
+Y G K GD++ A+ +++K LE+ P+N + + LG+
Sbjct: 80 WYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGN 119
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
Y +G + GDF A+ ++KVL+ P+N ETL LG Y+ +G A E L+K
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV 67
Query: 77 IDPRDAQAFIDLGEL-LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 135
+D A+A+ LG + + AA+DA + A L V + +G+++ GE
Sbjct: 68 LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-----NTVYADAYYKLGLVYDSMGE 122
Query: 136 FESAHQSFKDAL 147
+ A ++++ +
Sbjct: 123 HDKAIEAYEKTI 134
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 77 IDPR 80
+DPR
Sbjct: 66 LDPR 69
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFK 105
+ E LG+ Y + G ++A E +KA ++DPR A+A+ +LG D A++ ++
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 106 TARTL 110
A L
Sbjct: 62 KALEL 66
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 387 DVWINLAHVYFAQGNFALAMKMYQNCL 413
+ W NL + Y+ QG++ A++ YQ L
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKAL 30
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
LG Y+Q G E+A+ LRKA +IDP A A L ++ ++ L + + L
Sbjct: 56 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA-VVFQTEMEPKLADEEYRKAL--- 111
Query: 114 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173
A + VLNN G +E+ +E A+Q +A D TL +++ + S+
Sbjct: 112 ASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD----TLYPERSRVFENLGLVSLQM 167
Query: 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 223
K Q FE + L N+ +V +A LL + + V A Y L
Sbjct: 168 KKPAQAKEYFEKS---LRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 214
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
LG Y+Q G E+A+ LRKA +IDP A A L ++ ++ L + + L
Sbjct: 43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA-VVFQTEXEPKLADEEYRKAL--- 98
Query: 114 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173
A + VLNN G +E+ +E A+Q +A D TL +++ + S+
Sbjct: 99 ASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD----TLYPERSRVFENLGLVSLQX 154
Query: 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 223
K Q FE + L N+ +V A LL + + V A Y L
Sbjct: 155 KKPAQAKEYFEKS---LRLNRNQPSVALEXADLLYKEREYVPARQYYDLF 201
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 122/297 (41%), Gaps = 44/297 (14%)
Query: 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 68
KP +FI Y L + GD A+ + L+ PD LG++ LG++E+A+
Sbjct: 97 KP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155
Query: 69 ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL----------LKKAGEE 117
KA + P A A+ +LG + + A+ F+ A TL L +E
Sbjct: 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215
Query: 118 VPI-------------------EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 158
I V N+ +++E+G + A +++ A+
Sbjct: 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI----------- 264
Query: 159 KTKTYVIDASASMLQ-FKDMQLFHRFENDGNH-VELPWNKVTVLFNLARLLEQIHDTVAA 216
+ + + DA ++ K+ E+ N + L L NLA + + + A
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324
Query: 217 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273
LYR L + ++ A+ LA++ + + LQ ++ EA++++ + +A S +G+
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 113/297 (38%), Gaps = 50/297 (16%)
Query: 220 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-------GKYPNALSMLG 272
YR L D++D Y+ LAA A +++ +++ AL+ N N L LG
Sbjct: 90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG 149
Query: 273 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 332
LE ++KA ET + ++A W+ + N + L H EKA
Sbjct: 150 RLEEAKACYLKAIET----------QPNFAV----AWSNLGCVFNAQGEIWLAIHHFEKA 195
Query: 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 392
L + + NL G VL E FD + + + + V NL
Sbjct: 196 VTLDPNFLDAYI-NL------GNVLKEARIFDRAVAAYLRALSLSPNHAVVHG-----NL 243
Query: 393 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA-RTHYEAEQWQDCKKSLLRAIHL 451
A VY+ QG LA+ Y+ + + DA L A + + +DC + LR L
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR---L 300
Query: 452 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAA-SNL 507
P++ S + L +R + V A+ VF +AA SNL
Sbjct: 301 CPTHAD------------SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
L ++ + G+ A+ + K LE++P+ L + Q G++++A ++A +I P
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Query: 80 RDAQAFIDLGELL 92
A A+ ++G L
Sbjct: 371 TFADAYSNMGNTL 383
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
L + + GDF +A + ++ PDN L L I+ Q +++++ A K +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 80 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 139
A+A+ +LG + + G +A + R L+ + + + N+ G+ E A
Sbjct: 65 LLAEAYSNLGN--VYKERGQLQEAIEHYRHALRLKPDFIDGYI--NLAAALVAAGDMEGA 120
Query: 140 HQSFKDAL 147
Q++ AL
Sbjct: 121 VQAYVSAL 128
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 40/179 (22%)
Query: 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH------- 56
+K I F + LG V G+ A+ +FEK + + P+ + LG+
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218
Query: 57 ---------------------------IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 89
+Y + G I+ A + R+A ++ P A+ +L
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Query: 90 ELLISSDTGA-ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
L + A A D + TA L + LNN+ I E+G E A + ++ AL
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL 332
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 21 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 80
G K G + A+ E+V + + E LG YV+ G +++ ELL ++ P
Sbjct: 15 GISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPD 74
Query: 81 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI--EVLNNIGVIHFEKGEFES 138
+ + LG T + + A LL K E P+ V +GV G F+
Sbjct: 75 NIKVATVLGL------TYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDE 128
Query: 139 AHQSFKDALG 148
A SFK ALG
Sbjct: 129 AIDSFKIALG 138
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
LG +K G E+ + PDN + LG YVQ+ + + A LL K A+ +P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANP 107
Query: 80 RDAQAFIDLGELLISSDTG---AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 136
+ LG L + G A+D+FK A L G +V I + + G
Sbjct: 108 VNFNVRFRLGVAL--DNLGRFDEAIDSFKIALGLRPNEG-----KVHRAIAYSYEQMGSH 160
Query: 137 ESAHQSFKDA 146
E A FK A
Sbjct: 161 EEALPHFKKA 170
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 77
+ LG LG F A+ +F+ L + P+ + +A+ + Y Q+G E+A +KA ++
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANEL 173
Query: 78 DPRDA 82
D R A
Sbjct: 174 DERSA 178
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
L ++ + G+ A+ + K LE++P+ L + Q G++++A ++A +I P
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74
Query: 80 RDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 138
A A+ ++G L D AL + A + + +N+ IH + G
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA-----DAHSNLASIHKDSGNIPE 129
Query: 139 AHQSFKDAL 147
A S++ AL
Sbjct: 130 AIASYRTAL 138
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%)
Query: 202 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 261
N+ L+++ D A Y + + DA+ LA+I K N+ +I ALK+
Sbjct: 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141
Query: 262 GKYPNALSMLGDLELKNDDWVKAKETFR 289
+P+A L DW E +
Sbjct: 142 PDFPDAYCNLAHCLQIVCDWTDYDERMK 169
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 259
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++ EA++
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 260 VNGKYPNALSMLGD 273
++ + +A S +G+
Sbjct: 72 ISPTFADAYSNMGN 85
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 34/136 (25%)
Query: 44 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG-ELLISSDTGAALD 102
+P+ T A+G Y+ + +I +A+ K++ +DP+ A+I I + A+
Sbjct: 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428
Query: 103 AFKTARTLLKKAGEEVPI-------------------------------EVLNNIGVIHF 131
A+ TA L + G +P +LN +GV+ F
Sbjct: 429 AYTTAARLFQ--GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486
Query: 132 EKGEFESAHQSFKDAL 147
K + ++A F++AL
Sbjct: 487 NKSDMQTAINHFQNAL 502
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLK 112
LG ++QLG I A E L+ + + D +LG + + SD A++ F+ A L+K
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 113 K--AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164
K + E+ N+G + + +++A DAL G+ L+ D+ T +
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAA----IDALNQGLLLSTNDANVHTAI 556
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 33/141 (23%)
Query: 39 KVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQAFIDLGE-LLISSD 96
K++++YP N + A+G Y+ +G + E A+ L KA ++ A+I G + S+
Sbjct: 81 KLVDLYPSNPVSWFAVGCYYLXVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140
Query: 97 TGAALDAFKTARTLLKKA------------------------------GEEVPIEVLNNI 126
A A+ TA L K E P V + +
Sbjct: 141 HDQAXAAYFTAAQLXKGCHLPXLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF-VXHEV 199
Query: 127 GVIHFEKGEFESAHQSFKDAL 147
GV+ F+ GE+++A + F DAL
Sbjct: 200 GVVAFQNGEWKTAEKWFLDAL 220
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
LG V KL + AL + L + P N T A+G+I+ G E A + A +
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGLRR 301
Query: 80 RDAQAFIDLGELL 92
D + LG +
Sbjct: 302 DDTFSVTXLGHCI 314
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 19/149 (12%)
Query: 37 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA-KIDPRDAQAFIDLGELLISS 95
F + L I P++ +G + Q G+ + A++ A KI + +D E L+++
Sbjct: 182 FSQALSIAPEDPFVXHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241
Query: 96 ---------DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 146
ALD + A L+ + + IG IH G FE+A F A
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNAS-----TYSAIGYIHSLXGNFENAVDYFHTA 296
Query: 147 LG----DGIWLTLLDSKTKTYVIDASASM 171
LG D +T L + Y+ D+ A +
Sbjct: 297 LGLRRDDTFSVTXLGHCIEXYIGDSEAYI 325
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 21 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 80
G K G + A+ E+V + + + LG YV+ G +++ ELL ++ P
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 81 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI--EVLNNIGVIHFEKGEFES 138
+ + LG T + + A LL K E PI V +GV G F+
Sbjct: 75 NVKVATVLGL------TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDE 128
Query: 139 AHQSFKDALG 148
A SFK ALG
Sbjct: 129 AIDSFKIALG 138
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
LG +K G E+ L PDN + LG YVQ+ + + A LL K A+ +P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 80 RDAQAFIDLGELLISSDTG---AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 136
+ LG L + G A+D+FK A L G +V I + + G
Sbjct: 108 INFNVRFRLGVAL--KNLGRFDEAIDSFKIALGLRPNEG-----KVHRAIAFSYEQMGRH 160
Query: 137 ESAHQSFKDA 146
E A FK A
Sbjct: 161 EEALPHFKKA 170
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 77
+ LG LG F A+ +F+ L + P+ + +A+ Y Q+G+ E+A +KA ++
Sbjct: 114 FRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
Query: 78 D 78
D
Sbjct: 174 D 174
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413
G+ A+ G++ + L QV +A + V DV ++L Y G ++ + L
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDV-----DVALHLGIAYVKTGAVDRGTELLERSL 69
Query: 414 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470
N +L L T+ + +++ L++ P N+ +RF GVA++
Sbjct: 70 ADAPDNVKVATVLGL--TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLG 124
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 21 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 80
G K G + A+ E+V + + + LG YV+ G +++ ELL ++ P
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 81 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI--EVLNNIGVIHFEKGEFES 138
+ + LG T + + A LL K E PI V +GV G F+
Sbjct: 75 NVKVATVLGL------TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 139 AHQSFKDALG 148
A SFK ALG
Sbjct: 129 AIDSFKIALG 138
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
LG +K G E+ L PDN + LG YVQ+ + + A LL K A+ +P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 80 RDAQAFIDLGELLISSDTG---AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 136
+ LG L + G A+D+FK A L G +V I + + G
Sbjct: 108 INFNVRFRLGVAL--DNLGRFDEAIDSFKIALGLRPNEG-----KVHRAIAFSYEQMGRH 160
Query: 137 ESAHQSFKDA 146
E A FK A
Sbjct: 161 EEALPHFKKA 170
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 77
+ LG LG F A+ +F+ L + P+ + +A+ Y Q+G+ E+A +KA ++
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
Query: 78 D 78
D
Sbjct: 174 D 174
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413
G+ A+ G++ + L QV +A + V DV ++L Y G ++ + L
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDV-----DVALHLGIAYVKTGAVDRGTELLERSL 69
Query: 414 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466
N +L L T+ + +++ L++ P N+ +RF GVA+
Sbjct: 70 ADAPDNVKVATVLGL--TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 29 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88
++R T LE+ P++ + +LG +Y + A LR+A ++ P DAQ + L
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212
Query: 89 GELLISSD-TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
G L + + ALDA+ R L G + V+ N+ V + +++ A + A+
Sbjct: 213 GATLANGNRPQEALDAYN--RALDINPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 21 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 80
G K G + A+ E+V + + + LG YV+ G +++ ELL ++ P
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 81 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI--EVLNNIGVIHFEKGEFES 138
+ + LG + + + A LL K E PI V +GV G F+
Sbjct: 75 NVKVATVLGLTYVQ------VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 139 AHQSFKDALG 148
A SFK ALG
Sbjct: 129 AIDSFKIALG 138
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
LG +K G E+ L PDN + LG YVQ+ + + A LL K A+ +P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 80 RDAQAFIDLGELLISSDTG---AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 136
+ LG L + G A+D+FK A L G +V I + + G
Sbjct: 108 INFNVRFRLGVAL--DNLGRFDEAIDSFKIALGLRPNEG-----KVHRAIAFSYEQMGRH 160
Query: 137 ESAHQSFKDA 146
E A FK A
Sbjct: 161 EEALPHFKKA 170
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 77
+ LG LG F A+ +F+ L + P+ + +A+ Y Q+G+ E+A +KA ++
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
Query: 78 D 78
D
Sbjct: 174 D 174
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413
G+ A+ G++ + L QV +A + V DV ++L Y G ++ + L
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDV-----DVALHLGIAYVKTGAVDRGTELLERSL 69
Query: 414 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466
N +L L T+ + +++ L++ P N+ +RF GVA+
Sbjct: 70 ADAPDNVKVATVLGL--TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 29 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88
++R T LE+ P++ + +LG +Y + A LR+A ++ P DAQ + L
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212
Query: 89 GELLISSD-TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
G L + + ALDA+ R L G + V+ N+ V + +++ A + A+
Sbjct: 213 GATLANGNRPQEALDAYN--RALDINPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS 94
+ ++L ALG +Y G+ +A E KA KIDP +A+ L EL +S
Sbjct: 434 DVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCELRLS 481
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS 94
+ ++L ALG +Y G+ +A E KA KIDP +A+ L EL +S
Sbjct: 434 DVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCELRLS 481
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
YYG G V + ++ A FEK L +N + LG + V+L Q + A L++A +
Sbjct: 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153
Query: 77 IDPRDAQAFIDLGELL 92
++ D +A G L
Sbjct: 154 LNENDTEARFQFGMCL 169
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%)
Query: 2 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 61
A K I + E PY + + + AL ++K LE+ G++YV
Sbjct: 45 AFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104
Query: 62 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93
++A+++ KA + + F LG +L+
Sbjct: 105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLV 136
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 69
P +I YY V L +G ++AL + KV+++ D GH+ ++ G++++A++
Sbjct: 57 PDNYI-AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAED 115
Query: 70 LLRKAAKIDP 79
+K K +P
Sbjct: 116 DFKKVLKSNP 125
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 21 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 80
G Q+K+ +F +A+ + K +E+ P N Y +LG A + +A IDP
Sbjct: 19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78
Query: 81 DAQAFIDLGELLISS 95
++A+ +G L +SS
Sbjct: 79 YSKAYGRMG-LALSS 92
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 29 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 81
D+ A+ + KVL+I +N + L LG + G +E+A+E L KAA ++P +
Sbjct: 103 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPD 46
YY +G KLGD++ AL N++ +E+ PD
Sbjct: 38 YYLMGNAYRKLGDWQKALNNYQSAIELNPD 67
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN 47
Y G+ QL + +F SA +FEKVLE+ P N
Sbjct: 355 YRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN 47
Y G+ QL + +F SA +FEKVLE+ P N
Sbjct: 355 YRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 37 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 96
F+K +++ P+ T G +Y L + A+E +KA ++P + +I L LL
Sbjct: 295 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 354
Query: 97 TGAALDAFKTARTLLKKAGEEVPI---EVLNNIGVIHFEKGEFESAHQSF 143
+AF L EVP E+L ++G+F++A + +
Sbjct: 355 KFTESEAFFNETKLKFPTLPEVPTFFAEILT-------DRGDFDTAIKQY 397
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 37 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 96
F+K +++ P+ T G +Y L + A+E +KA ++P + +I L LL
Sbjct: 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358
Query: 97 TGAALDAFKTARTLLKKAGEEVPI---EVLNNIGVIHFEKGEFESAHQSF 143
+AF L EVP E+L ++G+F++A + +
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILT-------DRGDFDTAIKQY 401
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 69
P +I YY V L G ++AL + KV+++ D GH+ ++ G++++A++
Sbjct: 57 PDNYI-AYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAED 115
Query: 70 LLRKAAKIDP 79
+K K +P
Sbjct: 116 DFKKVLKSNP 125
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
+G +LK+ D++ A+ + + LEI P N + L + L + ++A L+KA +I P
Sbjct: 279 IGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338
Query: 80 RD 81
D
Sbjct: 339 ED 340
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 23 VQL-KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 81
VQL LG + +ALT FE+ L+ P + E L L ++LG + A E + PR
Sbjct: 13 VQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72
Query: 82 AQAFIDLGELLI-----SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI--GVIHFEKG 134
++ L E + + D + A ++LK A P ++ G+++ G
Sbjct: 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG 132
Query: 135 EFESAHQSFKDAL 147
E + A S K AL
Sbjct: 133 ERDKAEASLKQAL 145
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 69
P +I YY V L G ++AL + KV+ + D GH+ ++ G++++A++
Sbjct: 34 PDNYI-AYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAED 92
Query: 70 LLRKAAKIDPRDAQAFIDLGELLISSD-----TGAALDAFKTA 107
+K K +P + Q + L+ +D ALDAF A
Sbjct: 93 DFKKVLKSNPSE-QEEKEAESQLVKADEXQRLRSQALDAFDGA 134
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 25 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84
+K G+ R A+++ + ++ DN E + +Y QLG E + +R+ K+D +
Sbjct: 165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 224
Query: 85 F 85
F
Sbjct: 225 F 225
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%)
Query: 28 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87
D+ +A+T +K+LE+ + E + +++ G+ KA L+ A+K+ + +AF
Sbjct: 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 193
Query: 88 LGEL 91
+ L
Sbjct: 194 ISTL 197
>pdb|3VSF|A Chain A, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|B Chain B, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|C Chain C, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|D Chain D, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|E Chain E, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|F Chain F, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSZ|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VT0|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT1|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT2|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
Length = 526
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 252 ELVNEALKVNGK-----YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 306
E E + VNG N + G LK+ D+ +R S+ G Y + L
Sbjct: 35 EFAAEGVIVNGTQFKDTSGNVIHAHGGGMLKHGDYYYWYGEYRDDSNLFLGVSCYRSKDL 94
Query: 307 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 352
NW Y + + AP+L ++E+ K +Y + ++ NG
Sbjct: 95 VNWEYRGEVLSRNSAPELNHCNIERPKVMYNASTGEFVMWMHWENG 140
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 81 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFES 138
+AQA + G+ L D A LL KA + P +E N +G ++++KG+ S
Sbjct: 101 EAQALMLKGKAL-----NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155
Query: 139 AHQSFKDAL 147
AH F AL
Sbjct: 156 AHTCFSGAL 164
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 21 GQVQLKLGDFRSALTNFEKVLEIYPDN 47
G+ L + DF A +F+KVL++YP+N
Sbjct: 237 GEAHLAVNDFELARADFQKVLQLYPNN 263
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 21 GQVQLKLGDFRSALTNFEKVLEIYPDN 47
G+ L + DF A +F+KVL++YP+N
Sbjct: 237 GEAHLAVNDFELARADFQKVLQLYPNN 263
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 67
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat
Domain Protein Sru_0103 From Salinibacter Ruber,
Northeast Structural Genomics Consortium (Nesg) Target
Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat
Domain Protein Sru_0103 From Salinibacter Ruber,
Northeast Structural Genomics Consortium (Nesg) Target
Srr115c
Length = 99
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 67
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A
Sbjct: 7 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 59
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 26 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 85
++ +F+ A + F+K D C T + LG + LGQ EL ++ID RD
Sbjct: 8 QVTEFKEAFSLFDK----DGDGCITTRELGTVMRSLGQNPTEAELRDMMSEID-RDGNGT 62
Query: 86 IDLGELL 92
+D E L
Sbjct: 63 VDFPEFL 69
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
LG Q + + ++A+ ++ LE+ P+N + L AL Y + A E L+ K +P
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
Query: 80 ------RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGVI 129
++ + L + S +++ + + L +A G+ + ++ +GV+
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSV--LEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222
Query: 130 HFEKGEFESAHQSFKDAL 147
GEF A +F AL
Sbjct: 223 FHLSGEFNRAIDAFNAAL 240
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 78
GLG + G+F A+ F L + P++ LG + E+A E +A +I
Sbjct: 218 GLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277
Query: 79 PRDAQAFIDLGELLISSDTGA---ALDAFKTARTLLKKA--GEEVP 119
P ++ +LG I + GA A+ F TA +L +K+ ++VP
Sbjct: 278 PGFIRSRYNLGISCI--NLGAYREAVSNFLTALSLQRKSRNQQQVP 321
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From
Aspergillus Fumigatus
Length = 164
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 21 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 80
G + ++ A+ + + L I P N L Y GQ EKA E A +DP+
Sbjct: 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77
Query: 81 DAQAFIDLG 89
++A+ LG
Sbjct: 78 YSKAWSRLG 86
>pdb|3ZHE|B Chain B, Structure Of The C. Elegans Smg5-smg7 Complex
pdb|3ZHE|D Chain D, Structure Of The C. Elegans Smg5-smg7 Complex
Length = 395
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 9/114 (7%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
+ V L++GD N+ K E Y +C A G ++ QLG I ++
Sbjct: 129 MAYVLLRMGDLMRYKENYPKAQEYYEQSCRINPADGAVWNQLGLISSLGAKNLESVYFHT 188
Query: 80 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIE--VLNNIGVIHF 131
R A ++ + +G + FK + +PI+ L+ +G IHF
Sbjct: 189 RALHATMEF-----PTASGGLTNIFKNFAN--RDISRPMPIKDLYLSCLGRIHF 235
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 29 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88
D+R A + E L+ P N IY L +KAQE R+A I P A+ +
Sbjct: 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82
Query: 89 GELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI--GVIHFEKGEFESAHQSFKDA 146
G L A + L A P + N+ G+ ++G+F A K +
Sbjct: 83 GWFLCGRLNRPAESMAYFDKAL---ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139
Query: 147 LG 148
L
Sbjct: 140 LA 141
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDG 150
I LNN +EKGE+E+A + DA+ G
Sbjct: 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQG 68
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEI---YPDNCETLKA---LGHIYVQLGQIEKAQE---- 69
LG LG+FR A+ E+ L I + D +A LG+ Y+ LG+ E A E
Sbjct: 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252
Query: 70 --LLRKAAKIDPRDAQAFIDLG 89
LL + K +AQ+ LG
Sbjct: 253 TLLLARQLKDRAVEAQSCYSLG 274
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 36 NFEKVLEIYPDNCETLKALGHIYVQLGQIE----------------KAQELLRKAAKIDP 79
+F+K L+ Y E L IYV + + +A LL KA+K+DP
Sbjct: 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446
Query: 80 RDAQAFIDLGEL-LISSDTGAALDAFKTARTLLKKAGEEV 118
R QA I L ++ L D A+ F+ + L + E++
Sbjct: 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486
>pdb|2RFB|A Chain A, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFB|B Chain B, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFB|C Chain C, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFC|A Chain A, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|B Chain B, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|C Chain C, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|D Chain D, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
Length = 343
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 653 MDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAAR 712
MD E E D S Y P ++ND D +EE +ND + +++ D+ E A +
Sbjct: 50 MDNPEHKEFRDISAPYFLP-SKINDYKDFIEETSNDLI--KNIDNKDIISEYAVRLPVNI 106
Query: 713 RRRALSESDDDEPFERQLRD 732
+ L D D P + D
Sbjct: 107 ISKILGIPDSDMPLFKLWSD 126
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 33 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 89
A +F + L I PD E LG Q G + A E ++DP A ++ G
Sbjct: 62 ARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEI---YPDNCETLKA---LGHIYVQLGQIEKAQE---- 69
LG LG+FR A+ E+ L I + D +A LG+ Y+ LG+ E A E
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248
Query: 70 --LLRKAAKIDPRDAQAFIDLG 89
LL + K +AQ+ LG
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLG 270
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEI---YPDNCETLKA---LGHIYVQLGQIEKAQELLRK 73
LG LG+FR A+ E+ L I + D +A LG+ Y+ LG+ E A E +K
Sbjct: 191 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 250
>pdb|2XCB|A Chain A, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCB|B Chain B, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCC|A Chain A, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
pdb|2XCC|B Chain B, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
Length = 142
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 46 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 89
D E L ALG Q G+ + AQ++ + +D DA+ F+ LG
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLG 59
>pdb|1ZTY|A Chain A, Crystal Structure Of The Chitin Oligasaccharide Binding
Protein
pdb|1ZU0|A Chain A, Crystal Structure Of The Liganded Chitin Oligasaccharide
Binding Protein
Length = 529
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 392
N Y G+ +LA+ G DV+ D F + S + +Q P+ W +
Sbjct: 319 NTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDF 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,487,905
Number of Sequences: 62578
Number of extensions: 802486
Number of successful extensions: 2643
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2398
Number of HSP's gapped (non-prelim): 210
length of query: 760
length of database: 14,973,337
effective HSP length: 106
effective length of query: 654
effective length of database: 8,340,069
effective search space: 5454405126
effective search space used: 5454405126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)