Query 004339
Match_columns 760
No_of_seqs 1435 out of 3044
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 21:44:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2002 TPR-containing nuclear 100.0 4.5E-64 9.8E-69 533.4 63.2 563 5-609 332-904 (1018)
2 KOG4626 O-linked N-acetylgluco 100.0 1E-46 2.2E-51 381.0 36.2 398 4-470 106-504 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 9.6E-45 2.1E-49 366.7 35.8 447 3-496 37-484 (966)
4 KOG2002 TPR-containing nuclear 100.0 1E-40 2.3E-45 355.7 56.6 410 6-466 156-656 (1018)
5 TIGR00990 3a0801s09 mitochondr 100.0 3.7E-34 8.1E-39 324.6 50.5 388 14-458 127-578 (615)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-34 6.8E-39 344.9 51.5 428 6-470 457-885 (899)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.1E-34 1.8E-38 341.3 53.0 446 5-506 422-868 (899)
8 PRK11447 cellulose synthase su 100.0 1.6E-32 3.4E-37 331.0 55.1 488 5-505 53-701 (1157)
9 TIGR00990 3a0801s09 mitochondr 100.0 1.4E-32 3E-37 311.8 48.0 415 48-499 127-573 (615)
10 PRK11447 cellulose synthase su 100.0 1.5E-31 3.2E-36 322.6 50.5 433 19-496 274-739 (1157)
11 KOG1915 Cell cycle control pro 100.0 1.1E-29 2.3E-34 250.7 44.6 539 35-668 60-659 (677)
12 PRK15174 Vi polysaccharide exp 100.0 4.2E-29 9.1E-34 282.0 50.0 340 9-416 37-382 (656)
13 PRK15174 Vi polysaccharide exp 100.0 4.2E-29 9E-34 282.1 44.0 364 24-457 15-387 (656)
14 PRK10049 pgaA outer membrane p 100.0 3.7E-28 7.9E-33 280.4 45.4 414 9-507 10-459 (765)
15 PRK09782 bacteriophage N4 rece 100.0 2.3E-27 5.1E-32 272.9 49.1 252 230-506 476-742 (987)
16 KOG0547 Translocase of outer m 100.0 1.7E-27 3.7E-32 236.5 39.3 423 14-498 115-567 (606)
17 PRK10049 pgaA outer membrane p 100.0 2E-27 4.3E-32 274.3 44.0 394 6-459 41-464 (765)
18 PRK09782 bacteriophage N4 rece 100.0 5.7E-26 1.2E-30 261.5 52.2 409 15-470 45-657 (987)
19 KOG1173 Anaphase-promoting com 100.0 3.4E-25 7.3E-30 224.7 34.7 432 13-468 48-535 (611)
20 PRK14574 hmsH outer membrane p 100.0 1.7E-23 3.7E-28 236.3 50.7 453 6-507 26-516 (822)
21 KOG1155 Anaphase-promoting com 99.9 3.3E-24 7.2E-29 212.1 38.8 334 47-452 163-496 (559)
22 KOG1155 Anaphase-promoting com 99.9 3.7E-24 7.9E-29 211.8 38.3 367 13-453 163-538 (559)
23 KOG2003 TPR repeat-containing 99.9 1.4E-24 3.1E-29 213.1 35.0 461 15-526 202-706 (840)
24 KOG0548 Molecular co-chaperone 99.9 6.1E-24 1.3E-28 215.2 38.1 415 17-468 5-472 (539)
25 KOG2003 TPR repeat-containing 99.9 9.4E-25 2E-29 214.4 29.7 440 9-470 232-708 (840)
26 KOG0547 Translocase of outer m 99.9 4.7E-24 1E-28 212.2 33.1 404 4-454 139-569 (606)
27 KOG1173 Anaphase-promoting com 99.9 1E-23 2.2E-28 214.1 35.9 448 16-496 18-517 (611)
28 KOG1126 DNA-binding cell divis 99.9 6.5E-25 1.4E-29 227.7 27.3 305 120-507 317-623 (638)
29 KOG1126 DNA-binding cell divis 99.9 1.1E-24 2.4E-29 225.9 27.1 308 83-459 318-628 (638)
30 PRK11788 tetratricopeptide rep 99.9 4.2E-23 9.1E-28 222.7 38.5 271 50-378 37-313 (389)
31 KOG2076 RNA polymerase III tra 99.9 2E-22 4.4E-27 215.3 38.9 450 14-473 139-883 (895)
32 KOG2076 RNA polymerase III tra 99.9 2.8E-22 6E-27 214.2 39.8 327 48-440 139-544 (895)
33 KOG1156 N-terminal acetyltrans 99.9 1.9E-20 4.2E-25 193.2 46.8 503 15-540 8-557 (700)
34 KOG0495 HAT repeat protein [RN 99.9 3.9E-21 8.5E-26 197.4 39.7 377 14-464 516-893 (913)
35 PRK11788 tetratricopeptide rep 99.9 9.3E-22 2E-26 212.2 36.8 302 83-450 36-346 (389)
36 KOG4162 Predicted calmodulin-b 99.9 3.3E-21 7.1E-26 202.7 38.6 419 12-497 321-783 (799)
37 PRK14574 hmsH outer membrane p 99.9 5.7E-21 1.2E-25 216.0 41.5 422 5-459 59-521 (822)
38 KOG0495 HAT repeat protein [RN 99.9 3.5E-20 7.6E-25 190.5 42.6 430 4-470 370-865 (913)
39 PLN03218 maturation of RBCL 1; 99.9 3E-19 6.5E-24 207.7 55.4 371 12-451 368-748 (1060)
40 KOG0624 dsRNA-activated protei 99.9 6.6E-21 1.4E-25 181.6 33.9 348 46-465 36-384 (504)
41 KOG0548 Molecular co-chaperone 99.9 5.5E-21 1.2E-25 193.8 32.7 371 4-447 26-485 (539)
42 PLN03218 maturation of RBCL 1; 99.9 4E-19 8.6E-24 206.6 52.6 423 17-507 409-844 (1060)
43 KOG1174 Anaphase-promoting com 99.9 2.7E-20 5.9E-25 181.7 34.7 391 3-464 86-513 (564)
44 PLN03081 pentatricopeptide (PP 99.9 2.9E-20 6.3E-25 214.5 41.0 434 13-507 122-560 (697)
45 KOG0624 dsRNA-activated protei 99.9 4.4E-19 9.6E-24 169.2 34.3 334 78-502 34-392 (504)
46 PLN03077 Protein ECB2; Provisi 99.9 6.4E-19 1.4E-23 208.4 42.9 436 9-508 284-724 (857)
47 PLN03081 pentatricopeptide (PP 99.9 9.7E-19 2.1E-23 201.8 40.9 431 16-507 89-526 (697)
48 KOG1129 TPR repeat-containing 99.9 6.7E-20 1.5E-24 173.7 25.0 249 198-465 224-472 (478)
49 KOG1127 TPR repeat-containing 99.9 2.7E-19 5.8E-24 192.1 32.2 383 2-447 480-909 (1238)
50 PF13429 TPR_15: Tetratricopep 99.9 1.8E-21 4E-26 198.8 13.3 265 16-341 10-276 (280)
51 KOG4162 Predicted calmodulin-b 99.9 1.5E-18 3.2E-23 182.9 33.8 381 13-460 356-792 (799)
52 KOG1156 N-terminal acetyltrans 99.9 5.1E-17 1.1E-21 168.2 43.6 466 6-505 33-569 (700)
53 PF13429 TPR_15: Tetratricopep 99.9 7.2E-21 1.6E-25 194.4 15.3 269 42-376 4-277 (280)
54 KOG1174 Anaphase-promoting com 99.8 1.5E-18 3.2E-23 169.7 29.8 309 7-378 188-502 (564)
55 PLN03077 Protein ECB2; Provisi 99.8 7.8E-18 1.7E-22 199.1 41.2 411 14-466 253-667 (857)
56 KOG1127 TPR repeat-containing 99.8 2.3E-17 4.9E-22 177.5 37.8 390 27-471 471-899 (1238)
57 KOG1129 TPR repeat-containing 99.8 9.1E-20 2E-24 172.8 16.6 272 57-395 188-472 (478)
58 PRK12370 invasion protein regu 99.8 2.1E-18 4.5E-23 192.3 29.7 228 17-294 261-502 (553)
59 TIGR00540 hemY_coli hemY prote 99.8 2.2E-17 4.8E-22 177.4 36.0 301 50-415 86-399 (409)
60 TIGR00540 hemY_coli hemY prote 99.8 2.2E-17 4.7E-22 177.4 35.3 301 16-376 86-399 (409)
61 KOG1915 Cell cycle control pro 99.8 2.8E-15 6.1E-20 149.3 43.4 415 7-452 66-501 (677)
62 PRK12370 invasion protein regu 99.8 1.5E-17 3.3E-22 185.3 30.8 245 96-408 276-529 (553)
63 KOG1125 TPR repeat-containing 99.8 3.1E-18 6.7E-23 175.5 22.6 249 201-472 289-558 (579)
64 KOG1125 TPR repeat-containing 99.8 2.7E-18 5.8E-23 176.0 22.0 248 174-442 296-562 (579)
65 PRK10747 putative protoheme IX 99.8 2.5E-16 5.5E-21 168.2 35.0 297 16-415 86-390 (398)
66 PRK10747 putative protoheme IX 99.8 4.1E-16 9E-21 166.6 35.6 292 88-452 90-391 (398)
67 COG3063 PilF Tfp pilus assembl 99.8 4.5E-17 9.7E-22 148.5 23.6 205 16-266 37-242 (250)
68 KOG2376 Signal recognition par 99.8 5.5E-15 1.2E-19 151.7 41.2 427 15-470 13-506 (652)
69 COG3063 PilF Tfp pilus assembl 99.8 4.2E-17 9E-22 148.7 22.6 205 48-298 35-240 (250)
70 PRK11189 lipoprotein NlpI; Pro 99.8 7.6E-17 1.6E-21 164.8 27.3 231 211-465 40-280 (296)
71 TIGR02521 type_IV_pilW type IV 99.8 7.6E-17 1.7E-21 160.3 26.4 200 48-293 31-231 (234)
72 PRK11189 lipoprotein NlpI; Pro 99.8 1.8E-16 3.9E-21 162.1 29.4 216 195-436 62-285 (296)
73 TIGR02521 type_IV_pilW type IV 99.8 3.1E-16 6.7E-21 155.9 27.5 204 194-415 28-232 (234)
74 KOG3785 Uncharacterized conser 99.8 1E-14 2.3E-19 140.2 34.1 362 24-447 32-453 (557)
75 KOG0550 Molecular chaperone (D 99.7 1.1E-16 2.3E-21 157.2 20.6 295 16-415 51-350 (486)
76 KOG1840 Kinesin light chain [C 99.7 3.1E-15 6.7E-20 158.4 32.1 247 192-451 194-479 (508)
77 KOG3785 Uncharacterized conser 99.7 1E-14 2.2E-19 140.3 31.6 379 15-465 58-504 (557)
78 PLN02789 farnesyltranstransfer 99.7 2E-15 4.4E-20 153.5 27.9 241 192-453 32-304 (320)
79 KOG0550 Molecular chaperone (D 99.7 2.7E-16 5.8E-21 154.5 19.8 275 120-454 49-353 (486)
80 PLN02789 farnesyltranstransfer 99.7 8.8E-16 1.9E-20 156.1 24.1 224 7-278 30-268 (320)
81 PF12569 NARP1: NMDA receptor- 99.7 1.1E-13 2.4E-18 148.8 40.9 349 120-539 4-379 (517)
82 COG2956 Predicted N-acetylgluc 99.7 1.6E-14 3.4E-19 137.8 29.9 274 124-457 39-317 (389)
83 KOG1840 Kinesin light chain [C 99.7 1.3E-15 2.9E-20 161.1 25.2 250 9-293 194-478 (508)
84 COG2956 Predicted N-acetylgluc 99.7 1.7E-14 3.7E-19 137.6 29.2 267 54-378 41-313 (389)
85 cd05804 StaR_like StaR_like; a 99.7 3.4E-14 7.4E-19 151.2 35.6 323 10-415 2-336 (355)
86 cd05804 StaR_like StaR_like; a 99.7 5E-14 1.1E-18 149.9 35.0 313 78-452 2-337 (355)
87 PF12569 NARP1: NMDA receptor- 99.7 2.2E-13 4.7E-18 146.5 36.5 318 14-378 4-336 (517)
88 KOG4340 Uncharacterized conser 99.7 2.3E-13 4.9E-18 128.2 28.9 373 20-465 16-457 (459)
89 KOG2047 mRNA splicing factor [ 99.7 8.5E-12 1.8E-16 129.4 42.6 409 14-454 102-582 (835)
90 KOG2376 Signal recognition par 99.6 1.9E-12 4.1E-17 133.3 36.0 387 3-443 35-512 (652)
91 TIGR03302 OM_YfiO outer membra 99.6 6E-14 1.3E-18 139.6 20.4 189 9-262 28-234 (235)
92 TIGR03302 OM_YfiO outer membra 99.6 5.9E-13 1.3E-17 132.4 24.6 200 192-453 28-234 (235)
93 PRK15359 type III secretion sy 99.6 1.2E-13 2.6E-18 124.5 15.3 128 333-470 13-140 (144)
94 KOG1130 Predicted G-alpha GTPa 99.5 2.7E-13 5.9E-18 133.0 17.6 300 55-404 24-373 (639)
95 KOG2047 mRNA splicing factor [ 99.5 2.2E-10 4.8E-15 119.1 39.3 385 14-455 248-691 (835)
96 PRK14720 transcript cleavage f 99.5 3E-12 6.4E-17 143.5 26.5 266 8-380 25-310 (906)
97 COG3071 HemY Uncharacterized e 99.5 8.5E-11 1.8E-15 116.4 33.1 294 55-418 91-393 (400)
98 PRK04841 transcriptional regul 99.5 5.9E-11 1.3E-15 142.6 37.9 390 15-457 342-766 (903)
99 PRK14720 transcript cleavage f 99.5 3.1E-12 6.8E-17 143.3 23.7 280 191-504 25-306 (906)
100 KOG3060 Uncharacterized conser 99.5 2.1E-11 4.6E-16 113.0 24.4 209 96-358 27-236 (289)
101 PRK10370 formate-dependent nit 99.5 2.8E-12 6E-17 122.0 19.2 124 327-457 53-179 (198)
102 KOG3060 Uncharacterized conser 99.5 1E-10 2.3E-15 108.5 28.2 185 265-470 52-239 (289)
103 PRK04841 transcriptional regul 99.5 1.3E-10 2.8E-15 139.8 37.6 353 17-418 377-763 (903)
104 PRK15359 type III secretion sy 99.5 6E-13 1.3E-17 119.9 12.7 121 5-133 18-139 (144)
105 KOG1130 Predicted G-alpha GTPa 99.5 6.2E-13 1.3E-17 130.6 12.7 273 126-451 23-344 (639)
106 COG3071 HemY Uncharacterized e 99.4 2E-09 4.4E-14 106.8 35.6 303 121-495 85-388 (400)
107 KOG1128 Uncharacterized conser 99.4 1.2E-11 2.5E-16 130.8 21.1 236 120-432 398-633 (777)
108 KOG4340 Uncharacterized conser 99.4 4E-10 8.6E-15 106.6 28.9 186 59-294 21-207 (459)
109 COG5010 TadD Flp pilus assembl 99.4 2.3E-11 5E-16 114.2 20.3 177 250-448 52-228 (257)
110 KOG1128 Uncharacterized conser 99.4 6.8E-11 1.5E-15 125.1 25.9 223 11-295 395-617 (777)
111 PRK10370 formate-dependent nit 99.4 2.6E-11 5.7E-16 115.4 18.6 153 202-378 21-175 (198)
112 TIGR02552 LcrH_SycD type III s 99.4 1.8E-11 4E-16 110.0 15.9 119 334-459 4-122 (135)
113 COG5010 TadD Flp pilus assembl 99.4 9.7E-11 2.1E-15 110.1 20.2 179 216-414 52-230 (257)
114 PF04733 Coatomer_E: Coatomer 99.3 3.6E-11 7.7E-16 121.1 16.6 236 195-459 33-273 (290)
115 PRK15179 Vi polysaccharide bio 99.3 7.3E-10 1.6E-14 124.0 24.6 144 192-349 81-224 (694)
116 PF04733 Coatomer_E: Coatomer 99.3 7.9E-11 1.7E-15 118.6 15.3 258 85-415 5-265 (290)
117 TIGR02552 LcrH_SycD type III s 99.3 7.2E-11 1.6E-15 106.1 13.4 110 5-114 8-118 (135)
118 KOG0553 TPR repeat-containing 99.2 7.8E-11 1.7E-15 112.8 13.0 114 350-470 84-197 (304)
119 PRK15363 pathogenicity island 99.2 7.3E-11 1.6E-15 103.7 11.8 101 11-111 32-133 (157)
120 PRK15179 Vi polysaccharide bio 99.2 6.7E-10 1.4E-14 124.4 21.9 159 94-297 62-220 (694)
121 KOG0553 TPR repeat-containing 99.2 1E-10 2.2E-15 112.0 11.7 118 15-137 82-200 (304)
122 PRK15363 pathogenicity island 99.2 4.6E-10 9.9E-15 98.8 14.8 85 327-416 49-133 (157)
123 PRK10866 outer membrane biogen 99.2 1.8E-08 3.8E-13 99.2 25.1 201 195-447 30-237 (243)
124 COG4783 Putative Zn-dependent 99.2 2.6E-08 5.6E-13 101.8 26.4 152 228-415 303-454 (484)
125 COG4783 Putative Zn-dependent 99.1 3.9E-09 8.4E-14 107.7 19.6 153 44-261 302-455 (484)
126 PLN03088 SGT1, suppressor of 99.1 1.7E-09 3.7E-14 113.3 16.2 114 350-470 5-118 (356)
127 PF13525 YfiO: Outer membrane 99.1 1.9E-08 4.2E-13 96.6 22.0 188 196-442 4-198 (203)
128 PRK10866 outer membrane biogen 99.1 1.1E-08 2.3E-13 100.7 20.0 171 13-223 31-238 (243)
129 PLN03088 SGT1, suppressor of 99.1 1.6E-09 3.5E-14 113.4 14.9 112 17-133 5-117 (356)
130 PF13525 YfiO: Outer membrane 99.1 3.2E-08 6.9E-13 95.1 21.6 173 13-250 4-197 (203)
131 KOG3617 WD40 and TPR repeat-co 99.1 6.9E-07 1.5E-11 95.8 32.9 221 16-292 759-994 (1416)
132 KOG3617 WD40 and TPR repeat-co 99.0 1.8E-06 4E-11 92.7 34.8 333 17-414 803-1173(1416)
133 KOG1941 Acetylcholine receptor 99.0 8.6E-08 1.9E-12 93.6 21.4 285 92-453 17-322 (518)
134 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.2E-08 2.6E-13 89.3 14.1 111 347-459 2-113 (119)
135 KOG2053 Mitochondrial inherita 99.0 9.4E-06 2E-10 88.9 38.2 230 24-264 19-259 (932)
136 PF13414 TPR_11: TPR repeat; P 99.0 1.8E-09 3.8E-14 83.9 7.2 67 13-79 2-69 (69)
137 KOG1914 mRNA cleavage and poly 99.0 5.5E-05 1.2E-09 78.4 41.0 428 5-453 11-503 (656)
138 PF14938 SNAP: Soluble NSF att 98.9 1E-07 2.2E-12 97.0 21.1 110 349-458 116-232 (282)
139 PF09976 TPR_21: Tetratricopep 98.9 2.6E-08 5.6E-13 90.3 14.5 118 327-449 25-145 (145)
140 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.2E-08 7E-13 86.5 14.3 108 121-268 3-113 (119)
141 COG4235 Cytochrome c biogenesi 98.9 2.4E-08 5.1E-13 96.9 14.2 117 30-151 138-258 (287)
142 KOG1941 Acetylcholine receptor 98.9 3.6E-07 7.7E-12 89.4 21.9 243 15-294 7-275 (518)
143 COG4235 Cytochrome c biogenesi 98.9 4.2E-08 9E-13 95.2 15.6 126 327-459 136-264 (287)
144 PRK02603 photosystem I assembl 98.9 6.1E-08 1.3E-12 90.8 16.1 119 119-297 34-152 (172)
145 PF13414 TPR_11: TPR repeat; P 98.9 1E-08 2.3E-13 79.5 9.0 67 385-453 2-69 (69)
146 PRK02603 photosystem I assembl 98.9 6.5E-08 1.4E-12 90.6 16.1 121 192-346 30-153 (172)
147 PF13432 TPR_16: Tetratricopep 98.9 4.9E-09 1.1E-13 80.2 6.9 65 18-82 1-65 (65)
148 KOG3081 Vesicle coat complex C 98.9 1.6E-06 3.6E-11 81.7 24.0 90 362-458 188-278 (299)
149 KOG3081 Vesicle coat complex C 98.9 5E-06 1.1E-10 78.6 27.1 76 328-408 188-263 (299)
150 KOG1070 rRNA processing protei 98.9 9.9E-07 2.2E-11 100.1 26.3 218 67-342 1443-1663(1710)
151 PRK11906 transcriptional regul 98.8 1.3E-07 2.9E-12 97.3 17.9 130 17-151 258-403 (458)
152 cd00189 TPR Tetratricopeptide 98.8 1.8E-08 3.9E-13 83.7 9.9 97 16-112 2-99 (100)
153 PF09976 TPR_21: Tetratricopep 98.8 1.1E-07 2.4E-12 86.1 15.6 126 16-147 13-145 (145)
154 COG0457 NrfG FOG: TPR repeat [ 98.8 1.8E-05 3.9E-10 78.3 33.4 201 197-415 59-265 (291)
155 COG4785 NlpI Lipoprotein NlpI, 98.8 3.7E-07 7.9E-12 83.0 18.3 106 195-301 63-168 (297)
156 cd00189 TPR Tetratricopeptide 98.8 4.2E-08 9E-13 81.5 12.0 99 349-454 2-100 (100)
157 KOG2300 Uncharacterized conser 98.8 3.7E-05 8.1E-10 78.5 34.2 416 14-446 7-551 (629)
158 KOG1914 mRNA cleavage and poly 98.8 0.00019 4.1E-09 74.6 39.7 411 38-505 10-502 (656)
159 KOG1070 rRNA processing protei 98.8 1.5E-06 3.2E-11 98.7 26.1 235 214-468 1441-1682(1710)
160 PRK10803 tol-pal system protei 98.8 1.5E-07 3.3E-12 93.1 16.2 111 346-458 141-253 (263)
161 COG0457 NrfG FOG: TPR repeat [ 98.8 9.3E-06 2E-10 80.3 29.8 224 210-454 36-268 (291)
162 PF12895 Apc3: Anaphase-promot 98.8 2.1E-08 4.6E-13 81.1 8.4 83 360-448 2-84 (84)
163 PRK15331 chaperone protein Sic 98.8 4.5E-08 9.8E-13 86.6 10.8 101 9-109 32-133 (165)
164 CHL00033 ycf3 photosystem I as 98.8 7.6E-08 1.7E-12 89.8 13.1 137 363-507 15-152 (168)
165 PF12895 Apc3: Anaphase-promot 98.8 2.3E-08 5E-13 81.0 8.1 80 327-412 3-84 (84)
166 KOG2053 Mitochondrial inherita 98.8 6.6E-05 1.4E-09 82.5 36.4 124 5-133 34-158 (932)
167 KOG2471 TPR repeat-containing 98.8 2.4E-06 5.3E-11 86.8 23.8 223 14-277 100-381 (696)
168 KOG2471 TPR repeat-containing 98.8 3.5E-06 7.7E-11 85.7 24.7 354 51-450 209-683 (696)
169 PRK15331 chaperone protein Sic 98.8 1.1E-07 2.4E-12 84.2 12.4 111 340-458 30-140 (165)
170 KOG0543 FKBP-type peptidyl-pro 98.8 2.8E-07 6.2E-12 92.6 16.1 118 351-470 212-339 (397)
171 PRK10153 DNA-binding transcrip 98.8 2.5E-07 5.5E-12 100.9 17.2 123 327-457 356-488 (517)
172 CHL00033 ycf3 photosystem I as 98.7 1.9E-07 4E-12 87.2 14.0 113 195-307 33-162 (168)
173 COG4785 NlpI Lipoprotein NlpI, 98.7 8E-07 1.7E-11 80.9 17.1 198 231-452 65-267 (297)
174 COG4105 ComL DNA uptake lipopr 98.7 3.7E-06 8E-11 80.0 22.4 200 195-456 32-238 (254)
175 PF14938 SNAP: Soluble NSF att 98.7 2.5E-07 5.5E-12 94.0 15.9 210 89-344 42-268 (282)
176 PRK10153 DNA-binding transcrip 98.7 3.1E-07 6.6E-12 100.2 16.9 137 9-151 332-484 (517)
177 COG1729 Uncharacterized protei 98.7 3.5E-07 7.5E-12 87.8 14.7 109 350-460 144-253 (262)
178 PF13432 TPR_16: Tetratricopep 98.7 6.3E-08 1.4E-12 74.0 7.9 65 201-265 1-65 (65)
179 PRK10803 tol-pal system protei 98.7 2.6E-07 5.7E-12 91.4 13.2 101 14-114 142-250 (263)
180 PF12688 TPR_5: Tetratrico pep 98.7 6.4E-07 1.4E-11 76.6 13.7 99 121-259 2-103 (120)
181 PF14559 TPR_19: Tetratricopep 98.7 8.7E-08 1.9E-12 74.1 7.5 68 24-91 1-68 (68)
182 PRK11906 transcriptional regul 98.6 1.5E-06 3.3E-11 89.8 18.0 168 52-291 259-433 (458)
183 KOG0543 FKBP-type peptidyl-pro 98.6 8.4E-07 1.8E-11 89.3 15.1 129 305-453 213-357 (397)
184 COG4105 ComL DNA uptake lipopr 98.6 2.2E-05 4.9E-10 74.8 23.6 162 189-409 63-227 (254)
185 KOG2300 Uncharacterized conser 98.6 0.0012 2.6E-08 67.9 39.5 135 48-221 7-151 (629)
186 KOG1258 mRNA processing protei 98.6 0.001 2.2E-08 70.8 37.5 119 30-150 61-181 (577)
187 KOG4648 Uncharacterized conser 98.6 2.3E-08 4.9E-13 96.7 2.8 109 123-274 100-208 (536)
188 COG3898 Uncharacterized membra 98.6 0.00032 7E-09 70.0 30.8 297 94-464 97-403 (531)
189 PF13371 TPR_9: Tetratricopept 98.6 3.2E-07 6.9E-12 72.0 8.4 71 20-90 1-71 (73)
190 KOG4648 Uncharacterized conser 98.5 5.2E-08 1.1E-12 94.3 3.8 236 200-465 100-344 (536)
191 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.7E-06 3.7E-11 90.2 15.2 128 11-146 164-294 (395)
192 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 3.5E-06 7.6E-11 87.8 16.2 125 123-293 172-296 (395)
193 COG3898 Uncharacterized membra 98.5 0.0015 3.2E-08 65.4 33.0 281 125-465 89-371 (531)
194 COG5107 RNA14 Pre-mRNA 3'-end 98.5 0.00074 1.6E-08 68.7 31.2 429 5-455 33-535 (660)
195 PF13512 TPR_18: Tetratricopep 98.5 6.8E-06 1.5E-10 71.3 14.5 111 346-458 9-135 (142)
196 PF12688 TPR_5: Tetratrico pep 98.5 3.8E-06 8.3E-11 71.9 12.9 96 198-293 2-103 (120)
197 PF13512 TPR_18: Tetratricopep 98.4 5.3E-06 1.1E-10 72.0 13.3 87 119-245 9-98 (142)
198 COG1729 Uncharacterized protei 98.4 5.4E-06 1.2E-10 79.7 14.6 111 121-271 142-255 (262)
199 PF14559 TPR_19: Tetratricopep 98.4 7.4E-07 1.6E-11 68.8 7.3 66 208-273 2-67 (68)
200 COG4700 Uncharacterized protei 98.4 4E-05 8.7E-10 68.3 18.3 148 281-449 72-220 (251)
201 KOG2796 Uncharacterized conser 98.4 0.00033 7.1E-09 66.2 25.1 148 214-380 166-319 (366)
202 PF13424 TPR_12: Tetratricopep 98.4 9.4E-07 2E-11 70.4 7.5 69 384-452 3-76 (78)
203 KOG4234 TPR repeat-containing 98.4 2.7E-06 5.9E-11 76.5 10.8 114 350-465 98-211 (271)
204 KOG4234 TPR repeat-containing 98.4 4.8E-06 1E-10 74.9 11.1 117 120-274 95-211 (271)
205 COG4700 Uncharacterized protei 98.3 7.6E-05 1.6E-09 66.6 18.1 150 95-293 70-221 (251)
206 KOG4507 Uncharacterized conser 98.3 3E-05 6.6E-10 80.7 17.9 106 354-465 614-719 (886)
207 PF13371 TPR_9: Tetratricopept 98.3 3.5E-06 7.6E-11 66.0 8.8 70 204-273 2-71 (73)
208 PF10345 Cohesin_load: Cohesin 98.3 0.015 3.3E-07 66.1 42.6 394 14-455 59-567 (608)
209 KOG1550 Extracellular protein 98.3 0.00031 6.8E-09 78.3 26.5 271 195-505 242-539 (552)
210 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 2.9E-06 6.3E-11 87.6 9.2 71 8-78 69-142 (453)
211 PF13424 TPR_12: Tetratricopep 98.3 1.1E-06 2.4E-11 70.0 4.9 73 344-416 2-76 (78)
212 KOG1258 mRNA processing protei 98.3 0.011 2.3E-07 63.3 35.1 321 64-442 61-420 (577)
213 PF10345 Cohesin_load: Cohesin 98.2 0.019 4.1E-07 65.4 40.5 344 30-440 37-467 (608)
214 KOG4555 TPR repeat-containing 98.2 5.9E-05 1.3E-09 63.0 14.2 101 350-455 46-148 (175)
215 KOG1586 Protein required for f 98.2 0.00043 9.3E-09 64.4 20.0 110 350-459 116-232 (288)
216 KOG1550 Extracellular protein 98.2 0.00086 1.9E-08 74.8 26.9 277 30-378 228-540 (552)
217 PF10300 DUF3808: Protein of u 98.2 0.0019 4.1E-08 70.4 28.6 192 253-452 179-377 (468)
218 KOG4642 Chaperone-dependent E3 98.2 1.6E-05 3.6E-10 73.8 10.4 125 17-141 13-138 (284)
219 KOG2796 Uncharacterized conser 98.1 0.0006 1.3E-08 64.5 20.4 207 195-419 67-319 (366)
220 KOG3616 Selective LIM binding 98.1 0.0028 6E-08 68.2 27.6 49 25-74 455-503 (1636)
221 KOG4555 TPR repeat-containing 98.1 0.0002 4.2E-09 60.0 14.7 99 199-297 45-147 (175)
222 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.3E-05 2.8E-10 82.9 9.6 69 342-415 70-141 (453)
223 PF05843 Suf: Suppressor of fo 98.1 0.00013 2.9E-09 73.8 16.9 139 301-457 2-142 (280)
224 KOG0985 Vesicle coat protein c 98.1 0.014 3E-07 65.4 31.7 313 20-408 1054-1376(1666)
225 KOG0985 Vesicle coat protein c 98.0 0.014 3.1E-07 65.3 31.3 223 196-468 1103-1325(1666)
226 KOG1586 Protein required for f 98.0 0.00044 9.6E-09 64.3 16.2 189 27-266 27-230 (288)
227 PF06552 TOM20_plant: Plant sp 97.9 0.00014 3.1E-09 65.3 11.8 107 328-465 6-123 (186)
228 KOG1585 Protein required for f 97.9 0.0014 2.9E-08 61.6 18.3 202 15-254 32-250 (308)
229 KOG4642 Chaperone-dependent E3 97.9 8.6E-05 1.9E-09 69.1 10.3 85 327-416 24-108 (284)
230 PF04184 ST7: ST7 protein; In 97.9 0.00091 2E-08 69.5 18.6 193 236-459 173-383 (539)
231 KOG3616 Selective LIM binding 97.9 0.017 3.7E-07 62.4 28.3 115 18-146 665-791 (1636)
232 PF13428 TPR_14: Tetratricopep 97.9 2.6E-05 5.7E-10 53.7 5.3 41 16-56 3-43 (44)
233 KOG2610 Uncharacterized conser 97.9 0.0021 4.5E-08 63.0 19.7 173 235-421 107-282 (491)
234 PF13428 TPR_14: Tetratricopep 97.9 2.3E-05 4.9E-10 54.1 4.7 42 423-464 2-43 (44)
235 PF06552 TOM20_plant: Plant sp 97.9 0.00026 5.6E-09 63.6 12.4 106 213-355 7-122 (186)
236 PF02259 FAT: FAT domain; Int 97.9 0.023 5E-07 60.1 29.9 127 343-470 142-306 (352)
237 KOG2610 Uncharacterized conser 97.9 0.00072 1.6E-08 66.1 16.0 167 270-456 108-283 (491)
238 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.046 1E-06 56.1 34.9 221 252-506 289-533 (660)
239 PF05843 Suf: Suppressor of fo 97.9 0.00047 1E-08 69.8 15.8 138 198-348 2-142 (280)
240 KOG1585 Protein required for f 97.8 0.0028 6E-08 59.5 18.4 204 48-289 31-251 (308)
241 PF02259 FAT: FAT domain; Int 97.7 0.034 7.4E-07 58.8 28.6 151 193-345 142-341 (352)
242 PF10300 DUF3808: Protein of u 97.7 0.017 3.6E-07 63.1 26.2 139 327-470 202-354 (468)
243 PF13281 DUF4071: Domain of un 97.7 0.0083 1.8E-07 61.8 22.1 191 231-455 141-338 (374)
244 KOG0890 Protein kinase of the 97.7 0.16 3.4E-06 63.0 35.3 120 345-471 1668-1804(2382)
245 KOG0128 RNA-binding protein SA 97.7 0.15 3.3E-06 56.6 35.4 425 7-446 106-558 (881)
246 KOG0551 Hsp90 co-chaperone CNS 97.7 0.0042 9E-08 61.1 17.8 86 385-470 80-167 (390)
247 PF04184 ST7: ST7 protein; In 97.6 0.0024 5.3E-08 66.5 16.5 137 327-465 182-339 (539)
248 PF08631 SPO22: Meiosis protei 97.6 0.1 2.2E-06 52.9 28.1 145 120-293 35-185 (278)
249 PF13431 TPR_17: Tetratricopep 97.6 7.9E-05 1.7E-09 47.8 3.3 33 36-68 1-33 (34)
250 PF13431 TPR_17: Tetratricopep 97.6 7.1E-05 1.5E-09 48.0 3.1 32 336-367 2-33 (34)
251 COG2976 Uncharacterized protei 97.6 0.0022 4.7E-08 58.4 13.5 116 335-455 74-192 (207)
252 COG2909 MalT ATP-dependent tra 97.6 0.2 4.4E-06 56.3 31.1 240 196-448 414-685 (894)
253 PF07719 TPR_2: Tetratricopept 97.6 0.00019 4.2E-09 46.2 5.0 34 422-455 1-34 (34)
254 PF00515 TPR_1: Tetratricopept 97.5 0.00016 3.5E-09 46.6 4.6 34 422-455 1-34 (34)
255 KOG2396 HAT (Half-A-TPR) repea 97.5 0.16 3.5E-06 53.2 37.2 85 6-90 97-182 (568)
256 KOG0128 RNA-binding protein SA 97.5 0.24 5.3E-06 55.1 30.6 117 26-148 91-218 (881)
257 PF08631 SPO22: Meiosis protei 97.5 0.1 2.2E-06 52.9 26.8 101 196-296 34-152 (278)
258 KOG0530 Protein farnesyltransf 97.4 0.035 7.6E-07 53.0 20.1 201 62-311 57-269 (318)
259 KOG0545 Aryl-hydrocarbon recep 97.4 0.0035 7.5E-08 58.8 13.4 102 196-297 177-296 (329)
260 KOG0545 Aryl-hydrocarbon recep 97.4 0.0009 1.9E-08 62.6 9.6 101 14-114 178-297 (329)
261 PF07079 DUF1347: Protein of u 97.4 0.23 4.9E-06 51.5 38.4 116 327-447 394-520 (549)
262 PF13281 DUF4071: Domain of un 97.3 0.018 4E-07 59.4 18.8 168 196-378 140-336 (374)
263 PF07719 TPR_2: Tetratricopept 97.3 0.00039 8.4E-09 44.7 4.3 31 16-46 3-33 (34)
264 COG2909 MalT ATP-dependent tra 97.3 0.25 5.4E-06 55.7 28.2 212 47-295 414-648 (894)
265 COG3118 Thioredoxin domain-con 97.3 0.031 6.7E-07 54.7 18.9 162 231-410 134-296 (304)
266 PF00515 TPR_1: Tetratricopept 97.3 0.00042 9.2E-09 44.6 4.4 31 16-46 3-33 (34)
267 KOG0376 Serine-threonine phosp 97.2 0.00073 1.6E-08 69.9 7.1 106 353-465 10-115 (476)
268 KOG0376 Serine-threonine phosp 97.2 0.00042 9.2E-09 71.6 4.7 108 17-129 7-115 (476)
269 PF08424 NRDE-2: NRDE-2, neces 97.2 0.018 4E-07 59.5 16.9 146 5-150 10-184 (321)
270 COG3118 Thioredoxin domain-con 97.1 0.017 3.8E-07 56.4 14.7 127 16-149 136-265 (304)
271 KOG0551 Hsp90 co-chaperone CNS 97.0 0.004 8.6E-08 61.3 9.8 104 120-262 81-184 (390)
272 KOG0530 Protein farnesyltransf 97.0 0.21 4.5E-06 47.9 20.2 206 207-432 53-269 (318)
273 KOG2396 HAT (Half-A-TPR) repea 96.9 0.69 1.5E-05 48.7 35.8 89 32-125 89-179 (568)
274 PF03704 BTAD: Bacterial trans 96.9 0.056 1.2E-06 48.8 15.8 114 124-258 10-123 (146)
275 COG0790 FOG: TPR repeat, SEL1 96.9 0.29 6.3E-06 50.2 22.9 115 328-454 128-269 (292)
276 PF13181 TPR_8: Tetratricopept 96.9 0.0018 3.9E-08 41.6 4.1 32 423-454 2-33 (34)
277 COG0790 FOG: TPR repeat, SEL1 96.9 0.3 6.5E-06 50.1 22.8 166 24-245 51-236 (292)
278 PF08424 NRDE-2: NRDE-2, neces 96.8 0.085 1.8E-06 54.6 18.1 122 327-453 45-185 (321)
279 PF03704 BTAD: Bacterial trans 96.8 0.037 8E-07 50.0 13.4 95 199-293 8-124 (146)
280 PF07079 DUF1347: Protein of u 96.8 0.9 2E-05 47.3 44.4 443 16-503 8-523 (549)
281 COG5159 RPN6 26S proteasome re 96.8 0.33 7.1E-06 47.1 19.6 207 18-261 7-236 (421)
282 COG2976 Uncharacterized protei 96.7 0.065 1.4E-06 49.1 13.8 99 198-297 90-191 (207)
283 PF13174 TPR_6: Tetratricopept 96.6 0.005 1.1E-07 39.1 4.8 32 424-455 2-33 (33)
284 PF13181 TPR_8: Tetratricopept 96.6 0.0034 7.3E-08 40.3 3.8 30 16-45 3-32 (34)
285 PF04910 Tcf25: Transcriptiona 96.6 0.1 2.3E-06 54.6 16.8 143 224-378 33-224 (360)
286 KOG1308 Hsp70-interacting prot 96.6 0.0017 3.7E-08 64.1 3.3 95 19-113 119-214 (377)
287 PF04910 Tcf25: Transcriptiona 96.5 0.042 9.1E-07 57.5 13.6 150 4-153 30-226 (360)
288 KOG2041 WD40 repeat protein [G 96.5 1.7 3.7E-05 47.6 26.8 142 119-291 795-936 (1189)
289 PF13174 TPR_6: Tetratricopept 96.4 0.0055 1.2E-07 38.8 3.8 31 16-46 2-32 (33)
290 KOG1308 Hsp70-interacting prot 96.4 0.0029 6.4E-08 62.5 3.5 93 354-453 121-213 (377)
291 KOG4507 Uncharacterized conser 96.3 0.068 1.5E-06 56.7 13.3 160 334-498 200-361 (886)
292 PF13176 TPR_7: Tetratricopept 96.3 0.0065 1.4E-07 39.5 3.9 25 389-413 2-26 (36)
293 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.032 6.9E-07 39.7 7.1 43 423-465 2-44 (53)
294 KOG0890 Protein kinase of the 96.2 5.8 0.00013 50.2 32.1 65 384-452 1668-1732(2382)
295 KOG1463 26S proteasome regulat 96.2 1.7 3.6E-05 43.6 21.3 279 17-344 7-318 (411)
296 KOG3783 Uncharacterized conser 96.2 2.4 5.2E-05 45.4 23.7 238 192-455 262-524 (546)
297 COG4649 Uncharacterized protei 96.0 0.33 7.2E-06 43.5 13.9 140 327-469 72-213 (221)
298 PRK13184 pknD serine/threonine 96.0 3.1 6.6E-05 49.1 25.9 61 267-340 806-867 (932)
299 KOG2041 WD40 repeat protein [G 96.0 0.87 1.9E-05 49.7 19.5 244 119-448 691-936 (1189)
300 KOG3364 Membrane protein invol 95.9 0.079 1.7E-06 45.3 9.5 81 385-465 31-114 (149)
301 PF09986 DUF2225: Uncharacteri 95.9 0.15 3.2E-06 49.1 12.6 93 361-453 91-196 (214)
302 COG5159 RPN6 26S proteasome re 95.8 2 4.3E-05 41.9 19.6 205 201-418 7-238 (421)
303 PF14853 Fis1_TPR_C: Fis1 C-te 95.8 0.037 8E-07 39.4 6.1 38 17-54 4-41 (53)
304 PF04781 DUF627: Protein of un 95.8 0.071 1.5E-06 44.2 8.5 103 20-149 2-107 (111)
305 PF10602 RPN7: 26S proteasome 95.8 0.16 3.4E-06 47.4 12.1 105 347-453 36-144 (177)
306 PF12968 DUF3856: Domain of Un 95.8 0.3 6.5E-06 40.7 11.9 98 354-451 16-129 (144)
307 PF13176 TPR_7: Tetratricopept 95.8 0.016 3.4E-07 37.7 3.8 29 424-452 1-29 (36)
308 KOG1464 COP9 signalosome, subu 95.8 0.84 1.8E-05 44.0 16.5 101 352-452 150-261 (440)
309 KOG3824 Huntingtin interacting 95.8 0.027 5.9E-07 54.8 6.8 73 18-90 120-192 (472)
310 KOG2422 Uncharacterized conser 95.7 2.7 5.8E-05 45.3 21.4 156 210-378 251-450 (665)
311 KOG1144 Translation initiation 95.6 0.36 7.8E-06 53.1 15.0 19 519-537 214-232 (1064)
312 PRK10941 hypothetical protein; 95.6 0.099 2.2E-06 52.0 10.3 75 17-91 184-258 (269)
313 PF09613 HrpB1_HrpK: Bacterial 95.6 0.13 2.8E-06 46.0 9.9 85 12-96 8-93 (160)
314 PF09986 DUF2225: Uncharacteri 95.5 0.39 8.4E-06 46.2 13.8 114 96-239 92-208 (214)
315 PF09613 HrpB1_HrpK: Bacterial 95.5 0.27 5.9E-06 44.0 11.5 88 195-282 8-95 (160)
316 KOG1463 26S proteasome regulat 95.4 3.3 7.1E-05 41.6 23.0 271 201-494 8-313 (411)
317 PRK13184 pknD serine/threonine 95.4 7.8 0.00017 45.8 32.3 360 16-414 477-868 (932)
318 PF04781 DUF627: Protein of un 95.4 0.22 4.7E-06 41.3 10.0 50 327-376 58-107 (111)
319 KOG3783 Uncharacterized conser 95.4 4.8 0.0001 43.2 23.4 83 65-150 250-333 (546)
320 PF14561 TPR_20: Tetratricopep 95.4 0.22 4.7E-06 40.3 9.8 60 33-92 7-68 (90)
321 KOG1464 COP9 signalosome, subu 95.3 3 6.6E-05 40.3 19.5 213 211-436 41-286 (440)
322 smart00028 TPR Tetratricopepti 95.2 0.034 7.3E-07 34.5 4.0 32 423-454 2-33 (34)
323 KOG0163 Myosin class VI heavy 95.1 5.1 0.00011 44.4 21.6 27 427-453 821-847 (1259)
324 KOG2422 Uncharacterized conser 95.1 1.8 3.9E-05 46.5 17.8 177 96-297 253-451 (665)
325 smart00028 TPR Tetratricopepti 94.7 0.049 1.1E-06 33.6 3.7 30 16-45 3-32 (34)
326 COG4649 Uncharacterized protei 94.7 3.2 6.9E-05 37.5 15.9 128 201-341 62-195 (221)
327 PRK10941 hypothetical protein; 94.7 0.37 7.9E-06 48.0 11.4 76 199-274 183-258 (269)
328 PF14561 TPR_20: Tetratricopep 94.7 0.36 7.7E-06 39.1 9.3 75 333-410 8-82 (90)
329 PRK15180 Vi polysaccharide bio 94.6 7.3 0.00016 41.0 28.0 103 359-466 710-820 (831)
330 KOG2581 26S proteasome regulat 94.5 6.6 0.00014 40.5 21.1 132 327-458 140-283 (493)
331 COG5191 Uncharacterized conser 94.5 0.081 1.8E-06 51.8 6.0 86 5-90 98-184 (435)
332 PRK15180 Vi polysaccharide bio 94.5 0.2 4.3E-06 52.0 9.0 125 326-457 302-426 (831)
333 PF10602 RPN7: 26S proteasome 94.4 0.6 1.3E-05 43.5 11.5 107 385-505 35-143 (177)
334 KOG3807 Predicted membrane pro 94.4 4.3 9.4E-05 40.5 17.4 197 235-462 188-402 (556)
335 KOG3824 Huntingtin interacting 94.3 0.15 3.2E-06 49.9 7.3 76 199-274 118-193 (472)
336 KOG1839 Uncharacterized protei 94.2 0.52 1.1E-05 55.5 12.6 179 13-226 931-1128(1236)
337 TIGR02561 HrpB1_HrpK type III 94.1 1.2 2.5E-05 39.3 11.6 111 13-147 9-120 (153)
338 PF12968 DUF3856: Domain of Un 94.0 2.1 4.6E-05 35.9 12.3 57 20-76 15-83 (144)
339 KOG1839 Uncharacterized protei 93.9 0.69 1.5E-05 54.6 12.9 174 327-505 946-1136(1236)
340 KOG1538 Uncharacterized conser 93.9 7.5 0.00016 42.5 19.2 50 21-75 563-612 (1081)
341 KOG1310 WD40 repeat protein [G 93.7 0.13 2.9E-06 54.0 6.1 104 11-114 371-478 (758)
342 PF12862 Apc5: Anaphase-promot 93.7 0.79 1.7E-05 37.5 9.7 64 358-421 9-76 (94)
343 PF04190 DUF410: Protein of un 93.6 8.5 0.00018 38.4 18.7 68 263-342 88-170 (260)
344 KOG4014 Uncharacterized conser 93.6 5.5 0.00012 36.3 15.1 48 327-376 87-141 (248)
345 TIGR02561 HrpB1_HrpK type III 93.6 1 2.2E-05 39.7 10.3 85 197-281 10-94 (153)
346 COG4976 Predicted methyltransf 93.5 0.12 2.6E-06 48.4 4.8 61 22-82 3-63 (287)
347 COG1747 Uncharacterized N-term 93.4 13 0.00028 39.8 20.9 39 205-243 213-251 (711)
348 PF04190 DUF410: Protein of un 93.3 9.5 0.00021 38.1 21.0 140 193-359 86-240 (260)
349 PF04053 Coatomer_WDAD: Coatom 93.2 2.7 5.8E-05 45.4 15.2 126 206-370 270-396 (443)
350 COG5191 Uncharacterized conser 92.8 0.23 5.1E-06 48.7 5.9 85 190-274 100-185 (435)
351 PRK12798 chemotaxis protein; R 92.6 15 0.00033 38.5 22.3 190 264-469 111-303 (421)
352 KOG3364 Membrane protein invol 92.5 0.93 2E-05 39.0 8.3 79 196-274 31-114 (149)
353 KOG4014 Uncharacterized conser 92.5 8.3 0.00018 35.2 16.0 112 299-434 33-156 (248)
354 PF10579 Rapsyn_N: Rapsyn N-te 92.4 1.2 2.6E-05 34.4 8.0 63 389-451 9-72 (80)
355 KOG3807 Predicted membrane pro 92.1 14 0.00031 37.0 22.3 122 14-151 184-306 (556)
356 KOG2561 Adaptor protein NUB1, 92.0 5.4 0.00012 41.4 14.5 27 424-450 269-295 (568)
357 PF13374 TPR_10: Tetratricopep 92.0 0.36 7.9E-06 32.2 4.6 29 349-377 4-32 (42)
358 KOG0163 Myosin class VI heavy 92.0 24 0.00052 39.4 19.9 21 390-414 750-770 (1259)
359 PF13374 TPR_10: Tetratricopep 92.0 0.34 7.3E-06 32.4 4.4 29 423-451 3-31 (42)
360 PF11207 DUF2989: Protein of u 91.5 7.8 0.00017 36.3 13.9 60 345-406 139-198 (203)
361 PF12862 Apc5: Anaphase-promot 91.5 1.3 2.7E-05 36.3 8.1 61 89-149 6-70 (94)
362 PF04053 Coatomer_WDAD: Coatom 91.3 8.3 0.00018 41.7 16.1 76 200-291 298-373 (443)
363 PRK11619 lytic murein transgly 91.2 32 0.0007 39.4 34.5 116 327-450 255-374 (644)
364 KOG4814 Uncharacterized conser 91.1 28 0.0006 38.4 24.2 98 198-295 355-458 (872)
365 COG3914 Spy Predicted O-linked 91.1 12 0.00027 40.7 16.6 127 250-395 50-185 (620)
366 COG3914 Spy Predicted O-linked 91.0 6.2 0.00013 42.8 14.4 131 328-465 46-185 (620)
367 PF11207 DUF2989: Protein of u 90.5 2.5 5.3E-05 39.6 9.7 77 63-140 121-198 (203)
368 KOG1310 WD40 repeat protein [G 90.3 0.98 2.1E-05 47.8 7.7 90 360-456 387-479 (758)
369 KOG0529 Protein geranylgeranyl 90.3 18 0.00039 37.7 16.4 135 327-468 89-241 (421)
370 PF11817 Foie-gras_1: Foie gra 90.1 18 0.00038 35.9 16.3 87 363-449 154-245 (247)
371 COG4976 Predicted methyltransf 89.8 0.44 9.5E-06 44.8 4.2 62 205-266 3-64 (287)
372 PF15015 NYD-SP12_N: Spermatog 89.5 1.9 4.2E-05 44.4 8.8 99 127-255 183-286 (569)
373 COG2912 Uncharacterized conser 89.3 1.6 3.4E-05 42.9 7.8 62 23-84 190-251 (269)
374 PF07720 TPR_3: Tetratricopept 89.3 1.3 2.9E-05 28.6 4.9 32 423-454 2-35 (36)
375 PF00244 14-3-3: 14-3-3 protei 89.2 15 0.00033 36.0 14.8 28 201-228 5-32 (236)
376 PF15015 NYD-SP12_N: Spermatog 88.9 9.9 0.00021 39.5 13.2 62 350-416 231-292 (569)
377 KOG1538 Uncharacterized conser 88.4 14 0.00031 40.5 14.5 89 342-448 742-830 (1081)
378 PF07721 TPR_4: Tetratricopept 87.4 0.88 1.9E-05 26.8 3.1 21 389-409 4-24 (26)
379 COG3629 DnrI DNA-binding trans 87.1 2.2 4.8E-05 42.5 7.4 81 30-112 137-218 (280)
380 PF07720 TPR_3: Tetratricopept 86.8 2 4.4E-05 27.7 4.7 20 51-70 4-23 (36)
381 COG1747 Uncharacterized N-term 86.8 49 0.0011 35.6 22.6 228 194-455 63-292 (711)
382 KOG2114 Vacuolar assembly/sort 86.8 65 0.0014 37.0 27.2 30 120-149 368-397 (933)
383 PF10579 Rapsyn_N: Rapsyn N-te 86.6 4.1 8.8E-05 31.6 6.9 59 17-75 9-70 (80)
384 COG4941 Predicted RNA polymera 86.5 40 0.00086 34.2 17.0 188 247-462 212-405 (415)
385 PF07721 TPR_4: Tetratricopept 86.1 0.96 2.1E-05 26.7 2.7 23 16-38 3-25 (26)
386 PF10516 SHNi-TPR: SHNi-TPR; 86.1 1.6 3.4E-05 28.6 3.9 28 388-415 3-30 (38)
387 COG2912 Uncharacterized conser 85.6 5.4 0.00012 39.2 9.1 65 237-302 187-251 (269)
388 COG3629 DnrI DNA-binding trans 85.5 4.7 0.0001 40.2 8.8 63 197-259 153-215 (280)
389 PF13041 PPR_2: PPR repeat fam 85.2 3.8 8.3E-05 28.6 6.1 45 386-431 3-47 (50)
390 PF10516 SHNi-TPR: SHNi-TPR; 84.8 1.7 3.7E-05 28.4 3.6 30 423-452 2-31 (38)
391 PF04097 Nic96: Nup93/Nic96; 83.9 86 0.0019 35.8 21.5 87 203-294 264-356 (613)
392 PF11817 Foie-gras_1: Foie gra 83.5 26 0.00056 34.7 13.3 61 197-257 178-244 (247)
393 PF12739 TRAPPC-Trs85: ER-Golg 83.3 48 0.001 35.8 16.2 114 327-454 276-402 (414)
394 PF12739 TRAPPC-Trs85: ER-Golg 83.2 45 0.00097 36.0 15.9 28 17-44 211-238 (414)
395 KOG1832 HIV-1 Vpr-binding prot 82.7 1.3 2.7E-05 49.8 3.8 10 493-502 1258-1267(1516)
396 KOG1144 Translation initiation 82.7 31 0.00067 38.9 13.9 13 528-540 216-228 (1064)
397 PRK11619 lytic murein transgly 82.3 1E+02 0.0022 35.5 35.7 210 204-448 248-465 (644)
398 KOG0529 Protein geranylgeranyl 82.1 70 0.0015 33.6 16.4 135 328-469 44-196 (421)
399 PF10373 EST1_DNA_bind: Est1 D 82.1 59 0.0013 32.6 17.1 62 332-398 1-62 (278)
400 PF10255 Paf67: RNA polymerase 81.9 17 0.00036 38.5 11.5 70 121-225 123-192 (404)
401 smart00299 CLH Clathrin heavy 81.3 38 0.00081 29.9 14.3 40 22-61 15-54 (140)
402 PF10373 EST1_DNA_bind: Est1 D 80.7 5.6 0.00012 40.2 7.7 61 33-93 1-61 (278)
403 smart00386 HAT HAT (Half-A-TPR 79.8 5.3 0.00011 24.4 4.7 29 28-56 1-29 (33)
404 COG3947 Response regulator con 79.8 5.5 0.00012 39.2 6.5 62 49-110 280-342 (361)
405 PF12854 PPR_1: PPR repeat 79.5 4.2 9.1E-05 25.8 4.0 28 420-447 5-32 (34)
406 PF10255 Paf67: RNA polymerase 79.1 3.1 6.8E-05 43.8 5.1 67 349-416 124-194 (404)
407 KOG2758 Translation initiation 78.6 78 0.0017 31.9 16.0 72 43-114 124-200 (432)
408 PF00244 14-3-3: 14-3-3 protei 78.6 70 0.0015 31.4 16.0 30 234-263 4-33 (236)
409 PF12854 PPR_1: PPR repeat 78.6 4.2 9.2E-05 25.8 3.8 27 346-372 6-32 (34)
410 KOG0889 Histone acetyltransfer 78.1 2.8E+02 0.006 38.0 22.9 114 348-465 2737-2855(3550)
411 KOG2038 CAATT-binding transcri 78.0 2.2 4.7E-05 47.4 3.6 11 441-451 606-616 (988)
412 TIGR03504 FimV_Cterm FimV C-te 77.9 3.2 6.9E-05 28.2 3.2 25 390-414 3-27 (44)
413 KOG0686 COP9 signalosome, subu 77.7 37 0.00079 35.4 11.8 99 49-147 151-256 (466)
414 KOG2581 26S proteasome regulat 77.4 98 0.0021 32.4 23.0 126 207-345 136-279 (493)
415 TIGR03504 FimV_Cterm FimV C-te 77.2 4.6 9.9E-05 27.5 3.8 26 425-450 2-27 (44)
416 PF13041 PPR_2: PPR repeat fam 77.2 8.6 0.00019 26.8 5.5 41 266-306 4-44 (50)
417 KOG2114 Vacuolar assembly/sort 76.5 1.5E+02 0.0033 34.2 27.5 103 391-498 710-824 (933)
418 PTZ00121 MAEBL; Provisional 76.2 56 0.0012 39.8 14.1 9 9-17 322-330 (2084)
419 PF09797 NatB_MDM20: N-acetylt 75.4 37 0.0008 36.0 12.2 112 27-143 196-309 (365)
420 smart00299 CLH Clathrin heavy 75.2 58 0.0013 28.7 14.4 85 56-146 15-108 (140)
421 smart00386 HAT HAT (Half-A-TPR 74.6 8.1 0.00018 23.5 4.4 28 212-239 2-29 (33)
422 KOG4279 Serine/threonine prote 74.5 23 0.0005 39.6 10.0 121 82-246 201-335 (1226)
423 COG3947 Response regulator con 74.1 16 0.00034 36.3 7.8 61 233-293 281-341 (361)
424 COG4941 Predicted RNA polymera 72.3 1.2E+02 0.0026 31.0 16.4 32 30-61 212-243 (415)
425 KOG4279 Serine/threonine prote 71.4 52 0.0011 37.1 11.8 126 230-361 200-334 (1226)
426 PF09670 Cas_Cas02710: CRISPR- 70.6 1.3E+02 0.0028 32.0 14.7 62 199-260 133-198 (379)
427 COG4455 ImpE Protein of avirul 70.3 26 0.00056 33.3 8.0 62 21-82 8-69 (273)
428 PF09670 Cas_Cas02710: CRISPR- 70.2 71 0.0015 34.0 12.7 62 16-77 133-198 (379)
429 PF07946 DUF1682: Protein of u 69.6 55 0.0012 33.9 11.4 19 484-502 230-248 (321)
430 KOG2063 Vacuolar assembly/sort 69.2 2.4E+02 0.0053 33.3 24.5 171 199-375 506-712 (877)
431 KOG1832 HIV-1 Vpr-binding prot 69.1 3 6.6E-05 47.0 2.2 8 27-34 336-343 (1516)
432 PF06936 Selenoprotein_S: Sele 68.9 48 0.0011 31.0 9.6 19 589-607 112-130 (190)
433 KOG2063 Vacuolar assembly/sort 68.1 2.6E+02 0.0056 33.2 17.1 168 234-414 507-712 (877)
434 PLN03237 DNA topoisomerase 2; 67.9 61 0.0013 40.3 12.6 14 712-725 1300-1313(1465)
435 PLN02967 kinase 67.4 6.1 0.00013 44.0 4.1 10 593-602 36-45 (581)
436 smart00101 14_3_3 14-3-3 homol 67.4 1.3E+02 0.0029 29.6 18.1 57 17-73 4-64 (244)
437 COG4455 ImpE Protein of avirul 67.2 45 0.00097 31.7 8.9 57 241-297 11-67 (273)
438 PF14863 Alkyl_sulf_dimr: Alky 66.9 14 0.0003 32.8 5.4 46 48-93 70-115 (141)
439 KOG0546 HSP90 co-chaperone CPR 66.8 7 0.00015 39.7 4.0 130 123-276 225-354 (372)
440 PF08311 Mad3_BUB1_I: Mad3/BUB 66.5 87 0.0019 27.2 15.4 86 361-449 40-126 (126)
441 KOG0687 26S proteasome regulat 65.8 71 0.0015 32.4 10.5 102 195-297 102-213 (393)
442 PF04147 Nop14: Nop14-like fam 65.4 18 0.00039 42.9 7.7 8 487-494 210-217 (840)
443 KOG4814 Uncharacterized conser 65.3 2.3E+02 0.0051 31.7 32.5 85 327-416 368-458 (872)
444 KOG4521 Nuclear pore complex, 65.2 3.1E+02 0.0068 33.1 18.4 32 48-79 920-951 (1480)
445 KOG3756 Pinin (desmosome-assoc 64.8 1.6E+02 0.0034 29.6 12.4 39 561-600 184-222 (340)
446 KOG1497 COP9 signalosome, subu 64.0 1.2E+02 0.0027 30.6 11.7 101 349-450 105-212 (399)
447 KOG4364 Chromatin assembly fac 63.8 1.1E+02 0.0025 33.9 12.3 7 722-728 520-526 (811)
448 KOG4422 Uncharacterized conser 63.7 2E+02 0.0044 30.5 34.5 67 386-452 522-591 (625)
449 smart00101 14_3_3 14-3-3 homol 62.0 1.7E+02 0.0036 28.9 19.7 23 203-225 7-29 (244)
450 KOG2062 26S proteasome regulat 61.9 2.9E+02 0.0063 31.6 20.6 60 352-415 612-676 (929)
451 KOG2393 Transcription initiati 60.7 11 0.00024 40.3 4.3 10 706-716 360-369 (555)
452 KOG0686 COP9 signalosome, subu 59.2 2.4E+02 0.0052 29.8 18.5 114 348-463 151-278 (466)
453 KOG3677 RNA polymerase I-assoc 58.6 2.5E+02 0.0053 29.7 13.2 76 351-431 276-352 (525)
454 KOG3054 Uncharacterized conser 58.5 1.5E+02 0.0032 28.5 10.6 8 594-601 171-178 (299)
455 COG5187 RPN7 26S proteasome re 58.2 2.1E+02 0.0044 28.7 13.3 51 98-148 92-143 (412)
456 PF01535 PPR: PPR repeat; Int 57.8 16 0.00034 21.9 3.1 26 350-375 3-28 (31)
457 KOG4521 Nuclear pore complex, 57.4 4.3E+02 0.0093 32.1 17.5 142 120-282 920-1071(1480)
458 cd02680 MIT_calpain7_2 MIT: do 56.2 24 0.00052 27.3 4.4 19 398-416 18-36 (75)
459 PF01535 PPR: PPR repeat; Int 56.1 18 0.00038 21.7 3.2 27 122-148 2-28 (31)
460 KOG1497 COP9 signalosome, subu 55.9 1.9E+02 0.0042 29.3 11.4 83 386-469 103-193 (399)
461 PF06098 Radial_spoke_3: Radia 55.0 2.4E+02 0.0053 28.5 13.7 30 558-587 174-203 (291)
462 COG5593 Nucleic-acid-binding p 54.6 10 0.00022 40.4 2.7 26 640-665 682-707 (821)
463 KOG0276 Vesicle coat complex C 54.5 76 0.0017 35.0 9.1 69 333-415 627-695 (794)
464 PF10952 DUF2753: Protein of u 54.0 88 0.0019 26.8 7.5 68 389-456 4-88 (140)
465 KOG4151 Myosin assembly protei 53.5 50 0.0011 37.6 8.0 103 354-459 60-164 (748)
466 TIGR00756 PPR pentatricopeptid 53.4 25 0.00055 21.5 3.7 26 350-375 3-28 (35)
467 COG5187 RPN7 26S proteasome re 53.3 2.5E+02 0.0054 28.1 15.2 110 195-304 113-231 (412)
468 TIGR03362 VI_chp_7 type VI sec 53.0 2.7E+02 0.0058 28.5 16.0 154 25-226 110-279 (301)
469 KOG3088 Secretory carrier memb 53.0 25 0.00055 34.5 4.9 11 573-583 74-84 (313)
470 KOG2758 Translation initiation 52.7 2.7E+02 0.0058 28.4 17.3 183 218-415 116-317 (432)
471 TIGR00756 PPR pentatricopeptid 52.6 35 0.00076 20.8 4.3 27 389-415 3-29 (35)
472 cd02682 MIT_AAA_Arch MIT: doma 52.1 1.1E+02 0.0024 23.7 8.0 16 443-458 34-49 (75)
473 PF14863 Alkyl_sulf_dimr: Alky 52.0 60 0.0013 28.8 6.9 51 421-471 69-119 (141)
474 PF09205 DUF1955: Domain of un 51.7 1.7E+02 0.0036 25.7 10.5 114 327-452 16-150 (161)
475 PF11846 DUF3366: Domain of un 51.0 83 0.0018 29.7 8.3 46 405-453 130-175 (193)
476 KOG0804 Cytoplasmic Zn-finger 50.6 3.4E+02 0.0074 28.9 15.2 16 588-603 433-448 (493)
477 KOG2891 Surface glycoprotein [ 49.4 2.6E+02 0.0057 27.3 11.7 6 580-585 365-370 (445)
478 KOG0546 HSP90 co-chaperone CPR 49.2 13 0.00029 37.8 2.5 74 15-88 276-349 (372)
479 PF04090 RNA_pol_I_TF: RNA pol 48.9 2.4E+02 0.0052 26.7 13.5 52 327-378 55-107 (199)
480 KOG1920 IkappaB kinase complex 48.9 5.8E+02 0.013 31.1 25.0 72 209-289 892-963 (1265)
481 PF12921 ATP13: Mitochondrial 48.8 1.8E+02 0.0039 25.2 10.1 79 349-428 4-94 (126)
482 PF04097 Nic96: Nup93/Nic96; 48.6 4.7E+02 0.01 30.0 15.4 27 198-224 415-441 (613)
483 PF10952 DUF2753: Protein of u 48.4 75 0.0016 27.2 6.3 58 17-74 4-76 (140)
484 KOG0276 Vesicle coat complex C 48.0 2.1E+02 0.0044 31.9 11.0 97 327-448 651-747 (794)
485 PHA02537 M terminase endonucle 47.1 1.4E+02 0.003 29.0 9.0 98 358-455 94-211 (230)
486 PF05053 Menin: Menin; InterP 46.7 1.9E+02 0.0041 31.9 10.6 85 347-451 257-347 (618)
487 PF08311 Mad3_BUB1_I: Mad3/BUB 46.4 2E+02 0.0043 25.0 13.7 118 64-224 1-126 (126)
488 KOG0943 Predicted ubiquitin-pr 46.2 12 0.00026 43.9 1.9 133 627-760 1644-1778(3015)
489 KOG0687 26S proteasome regulat 46.0 3.5E+02 0.0075 27.7 12.8 154 348-501 105-266 (393)
490 PF13812 PPR_3: Pentatricopept 45.8 50 0.0011 20.2 4.2 29 349-377 3-31 (34)
491 KOG2891 Surface glycoprotein [ 45.7 3E+02 0.0065 26.9 11.4 82 515-596 277-381 (445)
492 KOG4691 Uncharacterized conser 45.7 2.5E+02 0.0054 26.0 11.3 79 523-603 97-175 (227)
493 PF02184 HAT: HAT (Half-A-TPR) 45.5 46 0.00099 20.9 3.5 29 62-91 1-29 (32)
494 PRK09510 tolA cell envelope in 45.2 3.8E+02 0.0081 28.4 12.4 80 521-600 61-140 (387)
495 PF13812 PPR_3: Pentatricopept 43.6 54 0.0012 20.0 4.0 31 14-44 1-31 (34)
496 cd02680 MIT_calpain7_2 MIT: do 43.1 59 0.0013 25.2 4.7 34 401-451 2-35 (75)
497 KOG4322 Anaphase-promoting com 42.0 4.6E+02 0.01 28.0 14.6 220 267-501 202-432 (482)
498 PRK09510 tolA cell envelope in 41.8 3.2E+02 0.0069 29.0 11.3 69 528-598 85-153 (387)
499 PF12931 Sec16_C: Sec23-bindin 41.4 3.9E+02 0.0085 27.0 17.9 197 20-226 1-227 (284)
500 KOG2062 26S proteasome regulat 41.4 6.1E+02 0.013 29.2 25.0 409 17-493 213-679 (929)
No 1
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-64 Score=533.43 Aligned_cols=563 Identities=39% Similarity=0.651 Sum_probs=511.0
Q ss_pred hhhcCCCCC-chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCC
Q 004339 5 KEINKPHEF-IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG----QIEKAQELLRKAAKIDP 79 (760)
Q Consensus 5 k~i~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p 79 (760)
+++..+|++ +.+++++|++|+..|++..|+.+|++++...|++.+++..||.+|...+ ..+.|..++.+++...|
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~ 411 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP 411 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc
Confidence 456667776 8899999999999999999999999999999999999999999999886 67899999999999999
Q ss_pred CcHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhccc
Q 004339 80 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 159 (760)
Q Consensus 80 ~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 159 (760)
.+..+|+.++.++.+++...++.+|..|+.+........++++++++|..++..|++..|...|..++......
T Consensus 412 ~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~------ 485 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV------ 485 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh------
Confidence 99999999999999999888899999999888887777899999999999999999999999999998731000
Q ss_pred chhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 004339 160 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 239 (760)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 239 (760)
...- .....+.+..|++|+++...+++..|...|..+++.+|.++++++++|.
T Consensus 486 --------------------------~n~d-e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 486 --------------------------ANKD-EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred --------------------------cCcc-ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 0000 0012236679999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC-CChHHHHHHHHHHHHHHHhhh
Q 004339 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNE 318 (760)
Q Consensus 240 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~lg~~~y~~~~~~~ 318 (760)
+....++..+|..++..++..+..+|.++..+|.+|+....|..|..-|..++..... .++++++.||++ |+..+...
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~-~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV-YIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH-HHHHhccc
Confidence 9999999999999999999999999999999999999999999999988888775433 389999999999 99999999
Q ss_pred hcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 004339 319 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 398 (760)
Q Consensus 319 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~ 398 (760)
..++..+.+.+.+|+++|.++|..+|.|.++.+++|.|+...|++..|+.+|.++.+... +++.+|+|+|+||+.
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DFEDVWLNLAHCYVE 692 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hCCceeeeHHHHHHH
Confidence 999988999999999999999999999999999999999999999999999999999875 689999999999999
Q ss_pred cCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhh
Q 004339 399 QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTR 478 (760)
Q Consensus 399 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~ 478 (760)
+|+|..|+++|+.++..|...+++.++.+||++|+..|.+.+|..++..|+++.|.++.+.||+|.++.+.+...+....
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 004339 479 RTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR----QRQEAARQ 554 (760)
Q Consensus 479 ~~l~~~~~a~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~----~k~e~~~~ 554 (760)
+++.++..++..++.|+++|..|....+. .|+...+.++++.|.++++++..+..+++++.++.+ .+.+.+++
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d~---r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~er~~kq~~~~~a~~ 849 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGDK---RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEERRAKQEKEEEALI 849 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865 899999999999999999999999998876554443 35567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhcCchhhhh
Q 004339 555 AALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRR 609 (760)
Q Consensus 555 ~~~~~e~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (760)
.++.+|++|+++|++..++.++++.++.++.....+.+.+..++|++.....+++
T Consensus 850 ~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~~~~e~~k~s~g~~~~~ 904 (1018)
T KOG2002|consen 850 EKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLPEIEEEKKKSGGGGRKR 904 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhhcCCCCCCC
Confidence 8888889999999888888888888888877777888888888998877665443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1e-46 Score=380.97 Aligned_cols=398 Identities=20% Similarity=0.216 Sum_probs=350.5
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
+-+++.+|....+|-.+|.++...|+++.|+.+|+.++++.|++.++|.++|.++...|+...|..+|..+++++|....
T Consensus 106 ~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c 185 (966)
T KOG4626|consen 106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC 185 (966)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh
Confidence 34556666667777777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchh
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 162 (760)
+...+|.++. .|+..+|..+|.+|+...|.. +.+|.+||.++..+|+...|+..|.+++.
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f-----AiawsnLg~~f~~~Gei~~aiq~y~eAvk-------------- 246 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIETQPCF-----AIAWSNLGCVFNAQGEIWLAIQHYEEAVK-------------- 246 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhhCCce-----eeeehhcchHHhhcchHHHHHHHHHHhhc--------------
Confidence 7777777666 667777777777777776665 56677777777777777777777777765
Q ss_pred hhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 004339 163 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK 242 (760)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 242 (760)
++|..+.+|++||.+|...+.|+.|+..|.+++...|++..++-++|.+|+
T Consensus 247 -----------------------------ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 247 -----------------------------LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred -----------------------------CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence 788999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCc
Q 004339 243 ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP 322 (760)
Q Consensus 243 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~ 322 (760)
.+|.++-|+..|++++.+.|+.+.++.++|..+...|+..+|..+|.+++.+.|. .+.+..+||++ |...
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni-~~E~-------- 367 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNI-YREQ-------- 367 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHH-HHHh--------
Confidence 9999999999999999999999999999999999999999999999999999998 89999999999 9999
Q ss_pred hHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 323 KLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 323 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
|.++.|..+|.+++...|....++++||.+|..+|++++|+.+|+.++.+.| ..++++.++|.+|-.+|+.
T Consensus 368 ----~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-----~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 368 ----GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-----TFADALSNMGNTYKEMGDV 438 (966)
T ss_pred ----ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-----hHHHHHHhcchHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 403 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 403 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+.|+..|.+|+.. +|.-++++.+||.+|...|+..+|+..|+.++++.|+.+.++.|++.|++...
T Consensus 439 ~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 439 SAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 9999999999995 78889999999999999999999999999999999999999999999987654
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-45 Score=366.72 Aligned_cols=447 Identities=20% Similarity=0.194 Sum_probs=373.8
Q ss_pred hhhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 3 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 3 a~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
.++.+...+......+.+|.-.++.|+|.+|...+..+...+|.+.+.+..++.++++..+++.....-..+++.+|...
T Consensus 37 v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~a 116 (966)
T KOG4626|consen 37 VLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGA 116 (966)
T ss_pred HHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHH
Confidence 34555566666667888888888888888888888888887777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 83 QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 83 ~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
++|.++|.++. .|++..|+..|+.++++.|+. .++|.++|.++...|+...|..+|..+++++|...-......
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~f-----ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKF-----IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchh-----hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 77777777766 667777777777777777765 677777777777777777777777777776663322222111
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 241 (760)
.. .-..+.+.++...+.+++...|..+.+|.+||.++..+|+...|+..|.++++++|.+.++|++||.+|
T Consensus 192 nL---------lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ 262 (966)
T KOG4626|consen 192 NL---------LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVY 262 (966)
T ss_pred HH---------HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHH
Confidence 11 111122223333334444578889999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcC
Q 004339 242 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA 321 (760)
Q Consensus 242 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~ 321 (760)
...+.++.|+.+|.+++.+.|++..++.++|.+|..+|..+-|+.+|++++...|. .+.++.+|++. +-..
T Consensus 263 ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanA-Lkd~------- 333 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANA-LKDK------- 333 (966)
T ss_pred HHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHH-HHhc-------
Confidence 99999999999999999999999999999999999999999999999999999998 89999999999 8777
Q ss_pred chHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCC
Q 004339 322 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 401 (760)
Q Consensus 322 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~ 401 (760)
|+..+|..+|.+++.+.|+++.++++||.+|.++|.++.|..+|.++++..| ..+.++.+||.+|-++|+
T Consensus 334 -----G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-----~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 334 -----GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-----EFAAAHNNLASIYKQQGN 403 (966)
T ss_pred -----cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-----hhhhhhhhHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999 889999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCH
Q 004339 402 FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTA 481 (760)
Q Consensus 402 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l 481 (760)
+++|+..|+.++.. .|.-++++.++|.+|-.+|+...|+.+|.+|+.++|....+..|||.+|...|
T Consensus 404 l~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG----------- 470 (966)
T KOG4626|consen 404 LDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG----------- 470 (966)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC-----------
Confidence 99999999999996 78889999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHH
Q 004339 482 DEVRSTVAELENAVR 496 (760)
Q Consensus 482 ~~~~~a~~~l~~A~~ 496 (760)
.+..|+..|+.|++
T Consensus 471 -ni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 471 -NIPEAIQSYRTALK 484 (966)
T ss_pred -CcHHHHHHHHHHHc
Confidence 55566666666654
No 4
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-40 Score=355.66 Aligned_cols=410 Identities=20% Similarity=0.220 Sum_probs=279.6
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
.+...|+++.++++.|.+.+..|+|..|+.+|..++.++|.. ++....+|.|+.++|+.+.|+..|.++++++|.++.+
T Consensus 156 Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a 235 (1018)
T KOG2002|consen 156 VLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA 235 (1018)
T ss_pred HHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence 356889999999999999999999999999999999999975 6778899999999999999999999999999999999
Q ss_pred HHHHHHHHc-cC---CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccc
Q 004339 85 FIDLGELLI-SS---DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 160 (760)
Q Consensus 85 ~~~la~~~~-~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 160 (760)
+..||.+-. .. .+..++..+.++...++.+ |.++..|+..|+..|+|..+..+...++....
T Consensus 236 lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n-----P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~--------- 301 (1018)
T KOG2002|consen 236 LVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN-----PVALNHLANHFYFKKDYERVWHLAEHAIKNTE--------- 301 (1018)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC-----cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---------
Confidence 999998755 22 5889999999999999987 79999999999999999999999988876321
Q ss_pred hhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-HHHHHHHHH
Q 004339 161 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-VDAYLRLAA 239 (760)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~ 239 (760)
..+..+..+|++|++|..+|+|++|..+|..+++.+|++ ...++.+|+
T Consensus 302 -------------------------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 302 -------------------------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred -------------------------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 122233455555555555555555555555555555544 445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC----CHHHH-------------------------------
Q 004339 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND----DWVKA------------------------------- 284 (760)
Q Consensus 240 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A------------------------------- 284 (760)
+|+..|++..|..+|++++...|++..+...||.+|...+ ..+.|
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~ 430 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW 430 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH
Confidence 5555555555555555555555555555544444444332 12222
Q ss_pred --HHHHHHhhhc----CCCCChHHHHHHHHHHHHHHHhhhh---------------cCc-----------------hHHh
Q 004339 285 --KETFRAASDA----TDGKDSYATLSLGNWNYFAALRNEK---------------RAP-----------------KLEA 326 (760)
Q Consensus 285 --~~~~~~al~~----~~~~~~~~~~~lg~~~y~~~~~~~~---------------~~~-----------------~~~~ 326 (760)
+.+|..++.+ .....+..++++|.. ++....... .++ ....
T Consensus 431 ~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl-hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQIPPEVLNNVASL-HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH-HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 3333333321 011133333344443 222110000 000 0123
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
+++..|...|..++..+|.++.++..+|.+....+...+|..++..++..+. .+|.+|..+|.+|+....+..|.
T Consensus 510 ~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-----~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-----SNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-----CCcHHHHHHHHHHHhhhhhcccc
Confidence 6888899999999999999999999999888888999999999999999886 66777777777666666665555
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHH------------hccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLARTHYE------------AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
.-|..+++.....+|+.++..||.+|+. .+.+.+|++.|.++|..+|.|..+-..+|.|+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVL 656 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhh
Confidence 5555555543333445555555555543 23445555555555555555555444444443
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=3.7e-34 Score=324.64 Aligned_cols=388 Identities=16% Similarity=0.137 Sum_probs=324.7
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
+..+..+|..++..|+|+.|+.+|++++...|+ +..+.++|.||..+|++++|+..|.+++.++|++..+|+.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345778999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcC-------------------------CCCCHHHHHHHHHHH-----------------
Q 004339 94 -SSDTGAALDAFKTARTLLKKAG-------------------------EEVPIEVLNNIGVIH----------------- 130 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~-------------------------~~~~~~~~~~la~~~----------------- 130 (760)
.|++++|+..|..+..+.+... .+.....+..++..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 8899999988876654432110 000000001111111
Q ss_pred -------------------HHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCcc
Q 004339 131 -------------------FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 191 (760)
Q Consensus 131 -------------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (760)
...+.|++|+.+|++++..+ .
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~----------------------------------------~ 325 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG----------------------------------------K 325 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC----------------------------------------C
Confidence 01133444444444444311 1
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
..|....++..+|.++...|++++|+..|++++..+|.+..+|+.+|.++...|++++|+.+|.+++..+|+++.+++.+
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 405 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHH
Q 004339 272 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 351 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 351 (760)
|.++...|++++|+.+|.+++.+.|. ...+++.+|.+ ++.. |+++.|+..|.+++...|.++.+++
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~-~~~~------------g~~~eA~~~~~~al~~~P~~~~~~~ 471 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVT-QYKE------------GSIASSMATFRRCKKNFPEAPDVYN 471 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999999988 88899999999 9988 9999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 352 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYF-AQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
.+|.++...|++++|+..|.+++.+.|..... .....+++.+.+++ ..|++++|+.+|++++.. .|.+..++..+|
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la 549 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMA 549 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 99999999999999999999999999832110 11222334444444 479999999999999996 677788999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
.++...|++++|+.+|++++.+.+.....
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999998876553
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.2e-34 Score=344.86 Aligned_cols=428 Identities=19% Similarity=0.190 Sum_probs=382.4
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
.+...|.++..++.+|.++...|++++|+.+|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|.+..++
T Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 457 LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred HHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 86 IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 86 ~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
..++.++. .|++.+|+..|.+++...|.. ...+..++.+|...|++++|+.++..++...|.........
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---- 607 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQE-----IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML---- 607 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHH----
Confidence 99999988 889999999999999998876 78899999999999999999999999988665432211111
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 244 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 244 (760)
..+....+.+..++..+...+...|.++.+++.+|.++...|++++|+.+|.+++..+|.+..++..++.++...
T Consensus 608 -----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 608 -----GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred -----HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 111112233333444444445567888899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchH
Q 004339 245 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 324 (760)
Q Consensus 245 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~ 324 (760)
|++++|+.++..+....|.++.++..+|.++...|++++|+..|.+++...|.. ..+..++.+ +...
T Consensus 683 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~-~~~~---------- 749 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRA-LLAS---------- 749 (899)
T ss_pred CCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHH-HHHC----------
Confidence 999999999999999999999999999999999999999999999999988763 667778888 8888
Q ss_pred HhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 004339 325 EATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 325 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 404 (760)
|++.+|+..+.+++..+|+++.+++.+|.++...|++++|+.+|++++...| .++.++.++|.++...|+ .+
T Consensus 750 --g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 750 --GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-----DNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCc-HH
Confidence 9999999999999999999999999999999999999999999999999998 789999999999999999 88
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 405 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 405 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
|+.++++++.. .|.++.++..+|.++...|++++|+.+|++++..+|.++.++++++.++...|
T Consensus 822 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 822 ALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 99999999996 67778899999999999999999999999999999999999999999987766
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.1e-34 Score=341.31 Aligned_cols=446 Identities=19% Similarity=0.160 Sum_probs=375.9
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+++...|......+.++..++..|++++|+..+.+++...|.++.++..+|.++...|++++|+.+|.+++..+|.++.+
T Consensus 422 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 501 (899)
T TIGR02917 422 TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501 (899)
T ss_pred HHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence 45567888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
++.++.++. .|++..|+..|.+++...|.+ ..++..++.++...|++++|+.+|.+++..+|.........
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l--- 573 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKN-----LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALAL--- 573 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHH---
Confidence 999999988 789999999999999998886 78999999999999999999999999988765322111100
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
.......+.+..++..+...+...|.++.+++.+|.++...|++++|+..|.+++..+|.++.++..++.++..
T Consensus 574 ------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 574 ------AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647 (899)
T ss_pred ------HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 01111122222333333334446677788888899999999999999999999998888888888899999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCch
Q 004339 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 323 (760)
Q Consensus 244 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~ 323 (760)
.|++++|+.+|.+++..+|++..++..++.++...|++++|+.++..+....|. .+..+..+|.+ +...
T Consensus 648 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--------- 716 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDL-YLRQ--------- 716 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHH-HHHC---------
Confidence 999999999999999988988889999999999999999999999888887776 77778888888 8887
Q ss_pred HHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 004339 324 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 403 (760)
Q Consensus 324 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 403 (760)
|+++.|+..|.+++...|++ .++..++.++...|++.+|+..+.+++...| .++.+++.+|.+|...|+++
T Consensus 717 ---g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 717 ---KDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHP-----NDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred ---CCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCcCHH
Confidence 89999999999999888877 6777888888999999999999999998888 77888899999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 483 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~ 483 (760)
+|+.+|++++.. .|+++.++..+|.++...|+ .+|+.++++++.+.|+++.++.++|.++...+
T Consensus 788 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------- 851 (899)
T TIGR02917 788 KAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG------------- 851 (899)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC-------------
Confidence 999999999886 56778888899999999988 77999999999999998888888888876655
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 004339 484 VRSTVAELENAVRVFSHLSAASN 506 (760)
Q Consensus 484 ~~~a~~~l~~A~~~~~~l~~~~~ 506 (760)
.+++|+.+|.......+
T Consensus 852 ------~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 852 ------EADRALPLLRKAVNIAP 868 (899)
T ss_pred ------CHHHHHHHHHHHHhhCC
Confidence 45666666666666554
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.6e-32 Score=331.05 Aligned_cols=488 Identities=14% Similarity=0.113 Sum_probs=382.2
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH----------------HHHHHHHHhcCCHHHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL----------------KALGHIYVQLGQIEKAQ 68 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------------~~la~~~~~~g~~~~A~ 68 (760)
+.+..+|+++.+++.++.+++..|++++|...++++++++|+++.++ +.+|.++...|++++|+
T Consensus 53 kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~ 132 (1157)
T PRK11447 53 RLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEAL 132 (1157)
T ss_pred HHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHH
Confidence 55678999999999999999999999999999999999999997764 56677899999999999
Q ss_pred HHHHHHHhcCCCcHHHHH-HHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 69 ELLRKAAKIDPRDAQAFI-DLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 146 (760)
Q Consensus 69 ~~~~~al~~~p~~~~~~~-~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 146 (760)
..|.+++..+|.+...-. .+..+.. .+++.+|+..|++++...|.+ +.++..+|.+++..|++++|+..|.++
T Consensus 133 ~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~-----~~~~~~LA~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 133 ASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGN-----TGLRNTLALLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred HHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999988764322 2233333 589999999999999999997 899999999999999999999999998
Q ss_pred hcccchhh--------hhcc------c---chh---------------hhhh-------------hhhHHHHHHhHHhhh
Q 004339 147 LGDGIWLT--------LLDS------K---TKT---------------YVID-------------ASASMLQFKDMQLFH 181 (760)
Q Consensus 147 l~~~p~~~--------~~~~------~---~~~---------------~~~~-------------~~~~~~~~~~~~~~~ 181 (760)
+...+... .+.. . ... ..+. ............+..
T Consensus 208 ~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~ 287 (1157)
T PRK11447 208 AKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGK 287 (1157)
T ss_pred hhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHH
Confidence 76543110 0000 0 000 0000 000111122334555
Q ss_pred hhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH--------------HHHHHHHHHHHcCCH
Q 004339 182 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD--------------AYLRLAAIAKARNNL 247 (760)
Q Consensus 182 ~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~la~~~~~~g~~ 247 (760)
++..+...+..+|.++.+++.+|.++...|++++|+.+|++++..+|.+.. ....+|.++...|++
T Consensus 288 A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~ 367 (1157)
T PRK11447 288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL 367 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH
Confidence 666777777889999999999999999999999999999999999987642 223557888999999
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhh---------
Q 004339 248 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE--------- 318 (760)
Q Consensus 248 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~--------- 318 (760)
++|+.+|++++..+|.++.++..+|.++...|++++|+.+|.+++...|. +..++..++.+ |... ...
T Consensus 368 ~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l-~~~~-~~~~A~~~l~~l 444 (1157)
T PRK11447 368 AQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANL-YRQQ-SPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHhc-CHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999887 67777777766 5321 000
Q ss_pred ----------------------hcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004339 319 ----------------------KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 376 (760)
Q Consensus 319 ----------------------~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 376 (760)
........|++++|+.+|++++..+|+++.+++.+|.+|...|++++|+..|++++..
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0011124599999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------hh-cC
Q 004339 377 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-------------------------------------KF-YY 418 (760)
Q Consensus 377 ~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------------------------------------~~-~~ 418 (760)
.| .++.+++.+|.++...+++++|+..++++.. .+ ..
T Consensus 525 ~P-----~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~ 599 (1157)
T PRK11447 525 KP-----NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ 599 (1157)
T ss_pred CC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 98 7788887777777777777777666554210 00 25
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHh-----HHhh----------hhcCHHH
Q 004339 419 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSAS-----TLQK----------TRRTADE 483 (760)
Q Consensus 419 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-----~l~~----------~~~~l~~ 483 (760)
|.++.+++.+|.+|...|++++|+.+|++++.+.|+++.++++++.+|...+.. .+.. ....+..
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 667888999999999999999999999999999999999999999998665531 1111 1112234
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 004339 484 VRSTVAELENAVRVFSHLSAAS 505 (760)
Q Consensus 484 ~~~a~~~l~~A~~~~~~l~~~~ 505 (760)
+....+.+++|+.+|..+....
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhC
Confidence 4445566777777777766544
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.4e-32 Score=311.84 Aligned_cols=415 Identities=13% Similarity=0.091 Sum_probs=333.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 126 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 126 (760)
+..+..+|..++..|+|++|+.+|.+++.+.|+ +..|.++|.||. .|++..|+..+.+++.+.|.. ..+|+.+
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~-----~~a~~~~ 200 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY-----SKALNRR 200 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC-----HHHHHHH
Confidence 456889999999999999999999999999995 788999999999 899999999999999999987 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh-----hhhHHHH---------HHhHHhhhhh------hcc
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID-----ASASMLQ---------FKDMQLFHRF------END 186 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-----~~~~~~~---------~~~~~~~~~l------~~~ 186 (760)
|.+|..+|++++|+..|..++...+.............+. .....+. .....++..+ ..+
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 9999999999999999987765543211100000000000 0000000 0000111100 011
Q ss_pred CCCccCCcchHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004339 187 GNHVELPWNKVTVLFNLARLLE---QIHDTVAASVLYRLILFK---YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 260 (760)
Q Consensus 187 ~~~~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 260 (760)
......++.....+..++..+. ..+.|++|+.+|.+++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1222334444445555554433 347899999999999976 4778889999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHH
Q 004339 261 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 340 (760)
Q Consensus 261 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al 340 (760)
+|.++.+++.+|.++...|++++|+.+|.+++...|. ++.+++.+|.+ |+.. |+++.|+.+|++++
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~-~~~~------------g~~~~A~~~~~kal 426 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQL-HFIK------------GEFAQAGKDYQKSI 426 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887 88999999999 9998 99999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC
Q 004339 341 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420 (760)
Q Consensus 341 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 420 (760)
.++|++..++..+|.++...|++++|+..|.+++...| .++.++..+|.++..+|++++|+..|++++...+...
T Consensus 427 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 427 DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-----EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999998 8899999999999999999999999999999743321
Q ss_pred c----HHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHH
Q 004339 421 D----AQILLYLARTHY-EAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAV 495 (760)
Q Consensus 421 ~----~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~ 495 (760)
. ...+...+.+++ ..|++++|+.+|++++.++|++..++..+|.++...| ++..|+..++.|+
T Consensus 502 ~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g------------~~~eAi~~~e~A~ 569 (615)
T TIGR00990 502 PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQG------------DVDEALKLFERAA 569 (615)
T ss_pred cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc------------CHHHHHHHHHHHH
Confidence 1 222333344444 4799999999999999999999999999999988777 5666666666666
Q ss_pred HHHH
Q 004339 496 RVFS 499 (760)
Q Consensus 496 ~~~~ 499 (760)
++..
T Consensus 570 ~l~~ 573 (615)
T TIGR00990 570 ELAR 573 (615)
T ss_pred HHhc
Confidence 5543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.5e-31 Score=322.60 Aligned_cols=433 Identities=16% Similarity=0.140 Sum_probs=347.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH--------------
Q 004339 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA-------------- 84 (760)
Q Consensus 19 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------- 84 (760)
.+|.+++..|++++|+..|++++..+|+++.++..+|.+|...|++++|+.+|++++..+|++...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 568999999999999999999999999999999999999999999999999999999999976431
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
...+|.++. .|++.+|+..|++++.+.|.+ +.+++.+|.+|...|++++|+.+|++++...|............
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~-----~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTD-----SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 233466666 789999999999999999986 78999999999999999999999999999887543222111111
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCC-Ccc--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGN-HVE--LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 240 (760)
.... . .-....++..+..... ... ........+..+|.++...|++++|+.+|++++..+|+++.+++.+|.+
T Consensus 429 ~~~~--~--~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 429 YRQQ--S--PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQD 504 (1157)
T ss_pred HHhc--C--HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0000 0 0000111111100000 000 0011134567899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCCh---------HHHHHHHHHHH
Q 004339 241 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS---------YATLSLGNWNY 311 (760)
Q Consensus 241 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~lg~~~y 311 (760)
|...|++++|+..|++++...|.++.+++.++.++...+++.+|+.++..+......... ...+.++.. +
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-L 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999887543222111 112344555 5
Q ss_pred HHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHH
Q 004339 312 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 391 (760)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 391 (760)
... |++++|+.+++ ..|.++.++..+|.++...|++++|+.+|.+++...| .++.+++.
T Consensus 584 ~~~------------G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~ 642 (1157)
T PRK11447 584 RDS------------GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLG 642 (1157)
T ss_pred HHC------------CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHH
Confidence 555 99999999877 5899999999999999999999999999999999999 88999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh------HHhhHHHH
Q 004339 392 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT------LRFDAGVA 465 (760)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~ 465 (760)
+|.+|...|++++|+..|+.++.. .|.++.++..+|.++...|++++|+.+|++++...|.++. ++..+|.+
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH
Confidence 999999999999999999999885 6677889999999999999999999999999999877654 34444555
Q ss_pred HHHHHHhHHhhhhcCHHHHHHHHHHHHHHHH
Q 004339 466 MQKFSASTLQKTRRTADEVRSTVAELENAVR 496 (760)
Q Consensus 466 ~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~ 496 (760)
+...| +...|+..|+.|+.
T Consensus 721 ~~~~G------------~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 721 EAQTG------------QPQQALETYKDAMV 739 (1157)
T ss_pred HHHcC------------CHHHHHHHHHHHHh
Confidence 54444 45566666666643
No 11
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-29 Score=250.65 Aligned_cols=539 Identities=15% Similarity=0.191 Sum_probs=376.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHh
Q 004339 35 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKK 113 (760)
Q Consensus 35 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~ 113 (760)
.-|+..|+.+.-+...|...|..-..++++..|..+|++|+..+..+...|+.++.+-+ ......|..++.+|+++.|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 44666666666777888899999889999999999999999998888889999888877 45888999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCC
Q 004339 114 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 193 (760)
Q Consensus 114 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (760)
. ..+|+....+--.+|+...|.++|++.+...|
T Consensus 140 V-----dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P------------------------------------------ 172 (677)
T KOG1915|consen 140 V-----DQLWYKYIYMEEMLGNIAGARQIFERWMEWEP------------------------------------------ 172 (677)
T ss_pred H-----HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC------------------------------------------
Confidence 6 68888888888889999999999999887544
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH---HHHH
Q 004339 194 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALSM 270 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 270 (760)
...+|......-.+.+..+.|..+|++.+-.+| .+..|+..+..-...|+..-|..+|..++....++.. ++..
T Consensus 173 --~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfva 249 (677)
T KOG1915|consen 173 --DEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVA 249 (677)
T ss_pred --cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334566666666666677777777777776665 3556677777777777777777777777665544332 4445
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHH---------------------HHHHHHhhhhcC--------
Q 004339 271 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW---------------------NYFAALRNEKRA-------- 321 (760)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~---------------------~y~~~~~~~~~~-------- 321 (760)
.+..-..+..++.|..+|+-++...|.+...-++.--.. .|-..+....-+
T Consensus 250 FA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl 329 (677)
T KOG1915|consen 250 FAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL 329 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH
Confidence 555555666677777777766666665432222110000 000000000000
Q ss_pred -chHHhhcHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHH
Q 004339 322 -PKLEATHLEKAKELYTRVIVQHTSN---------LYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI 390 (760)
Q Consensus 322 -~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 390 (760)
.....|+.+.-.+.|++++...|.. ++.|.+++..- ....+.+.+.++|+.++.+.|+..| +.+.+|+
T Consensus 330 rL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkF-tFaKiWl 408 (677)
T KOG1915|consen 330 RLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKF-TFAKIWL 408 (677)
T ss_pred HHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc-hHHHHHH
Confidence 0012389999999999999988863 33444444332 2678999999999999999998777 6799999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 391 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
..|...+.+.+...|.+++-.|+.++|.+. ++-....+-.++++++.+..+|++.+...|.+..+|...|.+-..+|
T Consensus 409 myA~feIRq~~l~~ARkiLG~AIG~cPK~K---lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 409 MYAQFEIRQLNLTGARKILGNAIGKCPKDK---LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhccCCchh---HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999875544 34444455588999999999999999999999999999998766555
Q ss_pred Hh-------HHhhhhcCHH----------HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004339 471 AS-------TLQKTRRTAD----------EVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKI 533 (760)
Q Consensus 471 ~~-------~l~~~~~~l~----------~~~~a~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (760)
.. .++..+..++ ++.-+.++++.|..+|++|....++.+++++................-
T Consensus 486 dtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~--- 562 (677)
T KOG1915|consen 486 DTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDL--- 562 (677)
T ss_pred hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccch---
Confidence 42 2344444433 788889999999999999999998877777666443321111110000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccC
Q 004339 534 HREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSE 613 (760)
Q Consensus 534 ~~~~~~~~e~~~~~k~e~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (760)
++.+ -...-...+|+.=+ +.- .-.+.. .-.|++..+.|.|+.+ +
T Consensus 563 ----~~~e--~~~~~~~~AR~ife---------rAn---~~~k~~--------~~KeeR~~LLEaw~~~----------E 606 (677)
T KOG1915|consen 563 ----AELE--ITDENIKRARKIFE---------RAN---TYLKES--------TPKEERLMLLEAWKNM----------E 606 (677)
T ss_pred ----hhhh--cchhHHHHHHHHHH---------HHH---HHHHhc--------CcHHHHHHHHHHHHHH----------H
Confidence 0000 00001111111110 000 000000 0023348899999998 5
Q ss_pred CCCccccccchhcccCccccccccccCccccchhhhhcccCCCCCCcchhhccCC
Q 004339 614 NDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNY 668 (760)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (760)
...++.++.+.+.+++||+.||++.++.++| +.+|+++.||. ||+|..+.++.
T Consensus 607 ~~~G~~~d~~~V~s~mPk~vKKrr~~~~edG-~~~~EEy~DYi-FPed~~~~~~~ 659 (677)
T KOG1915|consen 607 ETFGTEGDVERVQSKMPKKVKKRRKIQREDG-DTEYEEYFDYI-FPEDASATKNL 659 (677)
T ss_pred HhcCchhhHHHHHHhccHHHHhhhhhhcccC-chhHHHHHHhc-CccccccCcch
Confidence 5667777788899999999999999999999 88999999999 99998666666
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=4.2e-29 Score=282.05 Aligned_cols=340 Identities=12% Similarity=0.017 Sum_probs=309.1
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
...++...+...+..++..|++..|+.++..++...|.++.+++.+|.+....|+++.|+..|++++.++|+++.++..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~l 116 (656)
T PRK15174 37 DSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLV 116 (656)
T ss_pred hhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 33445556777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
|.++. .|+++.|+..|.+++.+.|.+ +.++..+|.++...|++++|+..+.+++.
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P~~-----~~a~~~la~~l~~~g~~~eA~~~~~~~~~------------------- 172 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFSGN-----SQIFALHLRTLVLMDKELQAISLARTQAQ------------------- 172 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCCChHHHHHHHHHHHH-------------------
Confidence 99988 889999999999999999987 89999999999999999999999998876
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHcCC
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~ 246 (760)
..|..+.++..++ .+...|++++|+..+..++...| ........++.++...|+
T Consensus 173 ------------------------~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~ 227 (656)
T PRK15174 173 ------------------------EVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK 227 (656)
T ss_pred ------------------------hCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC
Confidence 4556666666654 47889999999999999998876 344455667888999999
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHH----HHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCc
Q 004339 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK----AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP 322 (760)
Q Consensus 247 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~ 322 (760)
+++|+..|.+++..+|+++.++..+|.++...|++.+ |+..|++++...|. +..++..+|.+ +...
T Consensus 228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~-l~~~-------- 297 (656)
T PRK15174 228 YQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADA-LIRT-------- 297 (656)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHC--------
Confidence 9999999999999999999999999999999999985 89999999999988 88999999999 9988
Q ss_pred hHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 323 KLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 323 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
|+++.|+.+|++++..+|+++.++..+|.++...|++++|+..|.+++...| ..+.++..+|.++...|++
T Consensus 298 ----g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-----~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 298 ----GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-----VTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999998 6677777789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 004339 403 ALAMKMYQNCLRKF 416 (760)
Q Consensus 403 ~~A~~~~~~al~~~ 416 (760)
++|+..|++++...
T Consensus 369 deA~~~l~~al~~~ 382 (656)
T PRK15174 369 SEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999973
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=4.2e-29 Score=282.07 Aligned_cols=364 Identities=14% Similarity=0.070 Sum_probs=326.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhH
Q 004339 24 QLKLGDFRSALTNFEKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGA 99 (760)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~ 99 (760)
++++.+|+.-.-+|...-+.. .++...+...+..+.+.|++..|+..+..++...|.++.++..+|.+.. .|+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 345556665555555443332 3355667778888999999999999999999999999999999999877 889999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHh
Q 004339 100 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 179 (760)
Q Consensus 100 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (760)
|+..|++++.+.|.+ +.++..+|.++...|+++.|+..|.+++.
T Consensus 95 A~~~l~~~l~~~P~~-----~~a~~~la~~l~~~g~~~~Ai~~l~~Al~------------------------------- 138 (656)
T PRK15174 95 VLQVVNKLLAVNVCQ-----PEDVLLVASVLLKSKQYATVADLAEQAWL------------------------------- 138 (656)
T ss_pred HHHHHHHHHHhCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------
Confidence 999999999999997 89999999999999999999999999987
Q ss_pred hhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 180 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 180 ~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
..|.++.++..++.++...|++++|+..+..++...|....++..++ .+...|++++|+..+..++.
T Consensus 139 ------------l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 139 ------------AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred ------------hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence 67788999999999999999999999999999999999998887765 47899999999999999999
Q ss_pred HcCC-ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHH----HHH
Q 004339 260 VNGK-YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK----AKE 334 (760)
Q Consensus 260 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~----A~~ 334 (760)
.+|. .......++.++...|++.+|+..|.+++...|. ++.++..+|.+ |... |+++. |+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~-l~~~------------G~~~eA~~~A~~ 271 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLA-YYQS------------GRSREAKLQAAE 271 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH-HHHc------------CCchhhHHHHHH
Confidence 8763 3445566788999999999999999999999887 88999999999 8888 99885 899
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 335 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 335 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
.|++++..+|+++.++..+|.++...|++++|+.+|++++...| .++.++..+|.++...|++++|+..|++++.
T Consensus 272 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-----~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 272 HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-----DLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 8899999999999999999999999999998
Q ss_pred hhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 415 KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 415 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
. .|.++.++..+|.++...|++++|+..|++++...|++..
T Consensus 347 ~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 347 E--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred h--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 6 5666777778899999999999999999999999998853
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=3.7e-28 Score=280.40 Aligned_cols=414 Identities=13% Similarity=0.027 Sum_probs=346.5
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
..|-++....-...++...|++.+|+..|.+++...|....++..+|.++...|++.+|+.+|++++.++|.++.++..+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44556666677788889999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
+.++. .|++.+|+..+.+++...|.+ +. +..+|.++...|++..|+..|++++.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~-----~~-~~~la~~l~~~g~~~~Al~~l~~al~------------------- 144 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDK-----AN-LLALAYVYKRAGRHWDELRAMTQALP------------------- 144 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-----HH-HHHHHHHHHHCCCHHHHHHHHHHHHH-------------------
Confidence 99988 889999999999999999987 67 99999999999999999999999998
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH-----HHHHHHHHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD-----AYLRLAAIAK 242 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~ 242 (760)
..|.++.+++.++.++...+..+.|+..+.++.. .|.... ....+..++.
T Consensus 145 ------------------------~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~ 199 (765)
T PRK10049 145 ------------------------RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSF 199 (765)
T ss_pred ------------------------hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhc
Confidence 6778999999999999999999999999987775 554211 1222222222
Q ss_pred -----HcCCH---HHHHHHHHHHHHHcCCChHH-------HHH-HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHH
Q 004339 243 -----ARNNL---QLSIELVNEALKVNGKYPNA-------LSM-LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 306 (760)
Q Consensus 243 -----~~g~~---~~A~~~~~~al~~~p~~~~~-------~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~l 306 (760)
..+++ ++|+..++.++...|.++.. ... ++ +++..|++.+|+..|++++...+.....+...+
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l 278 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV 278 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 22334 78999999999775554432 122 34 346779999999999999988654344455557
Q ss_pred HHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC--
Q 004339 307 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN----LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-- 380 (760)
Q Consensus 307 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 380 (760)
|.+ |+.. |++++|+.+|++++..+|.+ ...+..++.++...|++++|+.++..+....|..
T Consensus 279 a~~-yl~~------------g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 279 ASA-YLKL------------HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred HHH-HHhc------------CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe
Confidence 888 8888 99999999999999988876 4567778888999999999999999999987721
Q ss_pred ------CCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 381 ------VFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 381 ------~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
..|+ ...++..+|.++...|++++|+..|++++.. .|.++.+++.+|.++...|++.+|+..|++++.++
T Consensus 346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 1122 2457789999999999999999999999996 67889999999999999999999999999999999
Q ss_pred CCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004339 453 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNL 507 (760)
Q Consensus 453 p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~~ 507 (760)
|++..+++.+|.++...+ .+..|..++..+....|.
T Consensus 424 Pd~~~l~~~~a~~al~~~-------------------~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 424 PRNINLEVEQAWTALDLQ-------------------EWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred CCChHHHHHHHHHHHHhC-------------------CHHHHHHHHHHHHHhCCC
Confidence 999999999998876555 477777777777776655
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=2.3e-27 Score=272.91 Aligned_cols=252 Identities=12% Similarity=0.013 Sum_probs=189.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 004339 230 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 309 (760)
Q Consensus 230 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~ 309 (760)
++.+|+.+|.++.. +++.+|+..|.+++...|++. ....+|.++...|++++|+..|.+++...|. ...++.+|.+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~--~~a~~~la~a 551 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS--NEDLLAAANT 551 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC--cHHHHHHHHH
Confidence 78888999988887 788889998888888888754 3556677777889999999999887766443 3456677777
Q ss_pred HHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHH
Q 004339 310 NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 389 (760)
Q Consensus 310 ~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 389 (760)
+... |++..|+.+|.+++..+|.+...+..++..+...|++++|+..|.+++...| + +.++
T Consensus 552 -ll~~------------Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-----~-~~a~ 612 (987)
T PRK09782 552 -AQAA------------GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-----S-ANAY 612 (987)
T ss_pred -HHHC------------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-----C-HHHH
Confidence 7777 8888888888888888887777776666666677888888888888888887 5 7778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 390 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
.++|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+.+|.+++.++|+++.+++++|.++...
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 88888888888888888888888886 6777888888888888888888888888888888888888888888887765
Q ss_pred HHhH-----Hhh----------hhcCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 004339 470 SAST-----LQK----------TRRTADEVRSTVAELENAVRVFSHLSAASN 506 (760)
Q Consensus 470 ~~~~-----l~~----------~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~ 506 (760)
|... +.. ...+..++..+...+..|++.+.+.....+
T Consensus 691 Gd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 691 DDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred CCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 5421 111 122223555555566666666665554443
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-27 Score=236.48 Aligned_cols=423 Identities=16% Similarity=0.123 Sum_probs=300.9
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
+..+-..|.-++..|.|++||.+|..+|.+.|+.+..|.+++.||...|++.+-++...++++++|++..+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--c---chhhhhcccchhhhhhh
Q 004339 94 -SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD--G---IWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~---p~~~~~~~~~~~~~~~~ 167 (760)
.|++.+|+.-..- +.++..... ..+-..+-+++-. .|......-+.. . |...++..
T Consensus 195 ~lg~~~eal~D~tv-~ci~~~F~n---~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~s--------- 256 (606)
T KOG0547|consen 195 QLGKFDEALFDVTV-LCILEGFQN---ASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIAS--------- 256 (606)
T ss_pred hhccHHHHHHhhhH-HHHhhhccc---chhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHH---------
Confidence 7899998865543 222222110 1111111122221 222223333321 1 11111111
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcch-HHHHH--HHHHHHHH-cCCHHHHHHHHHHHHHHc---C-Cc---------
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNK-VTVLF--NLARLLEQ-IHDTVAASVLYRLILFKY---Q-DY--------- 230 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~-~~~~~--~la~~~~~-~g~~~~A~~~~~~~l~~~---p-~~--------- 230 (760)
++..+..-......++.+ ..+.. .+-.++.. -..|..|...+.+..... + .+
T Consensus 257 -----------yf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~ 325 (606)
T KOG0547|consen 257 -----------YFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM 325 (606)
T ss_pred -----------HHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH
Confidence 111111111111111111 11111 11111111 125667776666554321 1 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q 004339 231 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 310 (760)
Q Consensus 231 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~ 310 (760)
..++...|..++-.|++-.|...|..++.++|.++..|..++.+|...++..+....|..+..++|. ++.+|+..|.+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm- 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQM- 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHH-
Confidence 4567777888888899999999999999999988888899999999999999999999999998888 88888889998
Q ss_pred HHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHH
Q 004339 311 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI 390 (760)
Q Consensus 311 y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 390 (760)
++.. ++++.|+.-|++++.++|.++.++..++.++++.+.+.++...|+.+....| ..++++.
T Consensus 404 ~flL------------~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-----~~~Evy~ 466 (606)
T KOG0547|consen 404 RFLL------------QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-----NCPEVYN 466 (606)
T ss_pred HHHH------------HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHH
Confidence 8888 8999999999999999999999999999999999999999999999999888 8889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCC------cHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCChhHHhhHH
Q 004339 391 NLAHVYFAQGNFALAMKMYQNCLRKFYYNT------DAQILLYLARTHYE-AEQWQDCKKSLLRAIHLAPSNYTLRFDAG 463 (760)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la 463 (760)
..|.++..+++|+.|++.|..|+.+- |. ++..+.+-|.+..+ .+++..|+.++.+|++++|....++..||
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~LE--~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tla 544 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIELE--PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLA 544 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhhc--cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 99999999999999999999999873 33 33334443333322 48888899999999999998888888888
Q ss_pred HHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHH
Q 004339 464 VAMQKFSASTLQKTRRTADEVRSTVAELENAVRVF 498 (760)
Q Consensus 464 ~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~ 498 (760)
.+.-+.+ .+..|+..|+.+..+-
T Consensus 545 q~~lQ~~------------~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 545 QFELQRG------------KIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHh------------hHHHHHHHHHHHHHHH
Confidence 8765555 4555555555555443
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=2e-27 Score=274.29 Aligned_cols=394 Identities=13% Similarity=0.028 Sum_probs=321.7
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
.+..+|..+.++..+|.++...|++.+|+.+|++++..+|.++.++..+|.++...|++.+|+..+++++..+|+++. +
T Consensus 41 ~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~ 119 (765)
T PRK10049 41 YRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-L 119 (765)
T ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-H
Confidence 334577888889999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 86 IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 86 ~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
..+|.++. .|++..|+..|++++.+.|.+ +.++..+|.++...+..+.|+..+.++.. .|...
T Consensus 120 ~~la~~l~~~g~~~~Al~~l~~al~~~P~~-----~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~---------- 183 (765)
T PRK10049 120 LALAYVYKRAGRHWDELRAMTQALPRAPQT-----QQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEK---------- 183 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHH----------
Confidence 99999988 889999999999999999997 89999999999999999999999987765 22100
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHcCCcHH-------HH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT---VAASVLYRLILFKYQDYVD-------AY 234 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~~-------~~ 234 (760)
..+...|....+...++..+...+++ +.|+..|+.++...|.++. ++
T Consensus 184 -----------------------~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 184 -----------------------RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred -----------------------HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 00000011111111111111222334 7899999999976433322 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC---ChHHHHHHHHHH
Q 004339 235 LRLAAIAKARNNLQLSIELVNEALKVNGKYP-NALSMLGDLELKNDDWVKAKETFRAASDATDGK---DSYATLSLGNWN 310 (760)
Q Consensus 235 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~lg~~~ 310 (760)
+....++...|++++|+..|++++...|..| .+...+|.+|+..|++++|+.+|.+++...|.. .......++.+
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a- 319 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS- 319 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH-
Confidence 2212344677999999999999998865433 244557999999999999999999998876652 13445556666
Q ss_pred HHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004339 311 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS---------------NLYAANGAGVVLAEKGQFDVSKDLFTQVQE 375 (760)
Q Consensus 311 y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 375 (760)
+... |++++|+.++..+....|. ...++..+|.++...|++++|+.+|.+++.
T Consensus 320 ~~~~------------g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 320 LLES------------ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred HHhc------------ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666 9999999999999988773 235778899999999999999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 376 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 376 ~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
..| .++.+++.+|.++...|++++|+..|++++.. .|.++.+++.+|.++...|++++|...+++++...|++
T Consensus 388 ~~P-----~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 388 NAP-----GNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred hCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 999 78999999999999999999999999999997 68889999999999999999999999999999999999
Q ss_pred hhHH
Q 004339 456 YTLR 459 (760)
Q Consensus 456 ~~~~ 459 (760)
+.+.
T Consensus 461 ~~~~ 464 (765)
T PRK10049 461 PGVQ 464 (765)
T ss_pred HHHH
Confidence 8543
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=5.7e-26 Score=261.53 Aligned_cols=409 Identities=13% Similarity=0.034 Sum_probs=301.4
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcc
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS 94 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (760)
..+|..|..+...|++++|+..|++++..+|+++.+++.++.+|...|++++|+.++++++..+|.+...+..++.+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i--- 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI--- 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---
Confidence 45677888888889999999999999999999999999999999999999999999999999999999988888777
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI--------HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~--------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
+++.+|+..|++++...|.+ ..++..++.. |...+....++. .+.+...|....+...
T Consensus 122 ~~~~kA~~~ye~l~~~~P~n-----~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~------- 187 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQKAC-----DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTD------- 187 (987)
T ss_pred ccChhHHHHHHHHHHhCCCC-----hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHH-------
Confidence 89999999999999999997 7888888887 666655555665 3333322111111110
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ-IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 245 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 245 (760)
...+......+-.++..+.+..+..|.....+..++.+|.. +++ +.+..++...++ .++.++..++..|...|
T Consensus 188 --~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 188 --LLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRG 261 (987)
T ss_pred --HHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCC
Confidence 00011111111223333444445677788888888888888 477 778777665333 67888889999999999
Q ss_pred CHHHHHHHHHHHHHHc----------------------------------------------------------------
Q 004339 246 NLQLSIELVNEALKVN---------------------------------------------------------------- 261 (760)
Q Consensus 246 ~~~~A~~~~~~al~~~---------------------------------------------------------------- 261 (760)
+.++|...+...-...
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 8888875553321111
Q ss_pred -------------------------------CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh-----------------
Q 004339 262 -------------------------------GKYPNALSMLGDLELKNDDWVKAKETFRAASD----------------- 293 (760)
Q Consensus 262 -------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------- 293 (760)
|.++..+..++...+..|++.+|...|..++.
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 11111222222233333444444444444433
Q ss_pred --------------------------------------------------------------------------------
Q 004339 294 -------------------------------------------------------------------------------- 293 (760)
Q Consensus 294 -------------------------------------------------------------------------------- 293 (760)
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~ 501 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQ 501 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence
Q ss_pred ---cCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004339 294 ---ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLF 370 (760)
Q Consensus 294 ---~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 370 (760)
..|. ....+.+|.+ +... |+++.|+..|++++...|. ...+..+|.++...|++.+|+.+|
T Consensus 502 Al~~~Pd--~~~~L~lA~a-l~~~------------Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 502 AEQRQPD--AWQHRAVAYQ-AYQV------------EDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred HHHhCCc--hHHHHHHHHH-HHHC------------CCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2221 1112222222 2233 9999999999998877555 456789999999999999999999
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 371 TQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 371 ~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
.+++...| .....+..++..+...|++++|+..|++++.. .|. +.++..+|.++.+.|++++|+.+|.+++.
T Consensus 566 ~qAL~l~P-----~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 566 QQAEQRGL-----GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APS-ANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred HHHHhcCC-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999988 66777777777778889999999999999997 444 88999999999999999999999999999
Q ss_pred hCCCChhHHhhHHHHHHHHH
Q 004339 451 LAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 451 ~~p~~~~~~~~la~~~~~~~ 470 (760)
++|+++.+++++|.++...+
T Consensus 638 l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 638 LEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999988776
No 19
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.4e-25 Score=224.74 Aligned_cols=432 Identities=14% Similarity=0.111 Sum_probs=305.8
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCCc-----
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA------AKIDPRD----- 81 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~----- 81 (760)
++.-.+.+|++++..|+|..|......- .+...+..+.+..+.|+....+++.|+.++... +..+|.+
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l 126 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTL 126 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhcee
Confidence 3444678888888888888887777654 445566777788888888888888887777632 1111111
Q ss_pred --------------HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------------
Q 004339 82 --------------AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE-------------- 132 (760)
Q Consensus 82 --------------~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-------------- 132 (760)
....+..|.+|. ..+...|...|..|+..++.. .+++..+...+..
T Consensus 127 ~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c-----~Ea~~~lvs~~mlt~~Ee~~ll~~l~~ 201 (611)
T KOG1173|consen 127 ELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKC-----FEAFEKLVSAHMLTAQEEFELLESLDL 201 (611)
T ss_pred ccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhh-----HHHHHHHHHHHhcchhHHHHHHhcccH
Confidence 112233444555 236777777777777665544 2222222111110
Q ss_pred ---cCCHHHHHHHHHHHhc----------ccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 133 ---KGEFESAHQSFKDALG----------DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 133 ---~g~~~~A~~~~~~al~----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
.+...+-+..+-.+.. ..+........ ....+-.......+....+-.-+......+..+|-++..
T Consensus 202 a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~-~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~ 280 (611)
T KOG1173|consen 202 AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLA-ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC 280 (611)
T ss_pred HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhh-hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch
Confidence 0111111111111110 00100000000 000000011111111111222222222333355555554
Q ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 200 L-FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 200 ~-~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
+ +.+| ++...|+..+-..+-.+++..+|+.+..|+.+|..|...|++.+|..+|.++..++|....+|..+|..+...
T Consensus 281 ~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 281 LPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc
Confidence 4 4455 8889999888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004339 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (760)
|..++|+.+|..|.++.|+ .....+.+|.- |... +++..|..+|..++.+.|.++.+++.+|.+.+
T Consensus 360 ~EhdQAmaaY~tAarl~~G-~hlP~LYlgme-y~~t------------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPG-CHLPSLYLGME-YMRT------------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred chHHHHHHHHHHHHHhccC-CcchHHHHHHH-HHHh------------ccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence 9999999999999999887 55555667776 8888 99999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHhcCCC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSV--FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 436 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 436 (760)
..+.|.+|..+|+.++...+... .+.....+.+||+++.+++.+.+|+..|++++.+ .|.++.++..+|.+|..+|
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLG 503 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhc
Confidence 99999999999999996554211 1124567999999999999999999999999997 7888999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 437 QWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 437 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
+++.|+.+|.++|-+.|++..+.--|+.+++.
T Consensus 504 nld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 504 NLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred ChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999998887777776554
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=1.7e-23 Score=236.31 Aligned_cols=453 Identities=12% Similarity=0.025 Sum_probs=340.8
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
.....|..+...+..+.+.++.|++..|+..|.++++.+|.++.+...++.++...|++.+|+.++++++.-.|.....+
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 34567889999999999999999999999999999999999975555899999999999999999999994444455555
Q ss_pred HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 86 IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 86 ~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
..+|.++. .|+++.|+..|++++...|.+ +.++..++.+|...+++++|+..+.+++...|.....
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n-----~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-------- 172 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTN-----PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-------- 172 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH--------
Confidence 55577888 689999999999999999997 7888899999999999999999999998865531111
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHH--HHH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA--IAK 242 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~--~~~ 242 (760)
.....+.........++..+.+.+...|.+..++..+..++...|-...|..+....-.........++.... -..
T Consensus 173 --l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v 250 (822)
T PRK14574 173 --MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV 250 (822)
T ss_pred --HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH
Confidence 0001111111222234444555555666666666666666666666666665444322111111111111111 111
Q ss_pred Hc---------C---CHHHHHHHHHHHHHHcCCChH-------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHH
Q 004339 243 AR---------N---NLQLSIELVNEALKVNGKYPN-------ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 303 (760)
Q Consensus 243 ~~---------g---~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (760)
+. . -.+.|+..++.++...+..|. +..-.-.++...|++.+++..|+.+.........++.
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 11 1 234466666666664444332 3334455667889999999999988876655578899
Q ss_pred HHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 004339 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT------SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 377 (760)
Q Consensus 304 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 377 (760)
...|.. |+.. +.+.+|+.+|..++...| ........|...|...++|++|..++.++....
T Consensus 331 ~a~ada-yl~~------------~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 331 RWAASA-YIDR------------RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred HHHHHH-HHhc------------CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 999999 9998 999999999999988653 234445788889999999999999999999866
Q ss_pred cC----------CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004339 378 SG----------SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLR 447 (760)
Q Consensus 378 p~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 447 (760)
|- ...|+...+...++.++...|++.+|...++..+.. .|.++.++..+|.++...|.+..|...++.
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKA 475 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 61 234456778889999999999999999999999885 889999999999999999999999999999
Q ss_pred HHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004339 448 AIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNL 507 (760)
Q Consensus 448 al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~~ 507 (760)
++.++|.+..+.+.++.++..++ ++.+|..+...+....|.
T Consensus 476 a~~l~P~~~~~~~~~~~~al~l~-------------------e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 476 VESLAPRSLILERAQAETAMALQ-------------------EWHQMELLTDDVISRSPE 516 (822)
T ss_pred HhhhCCccHHHHHHHHHHHHhhh-------------------hHHHHHHHHHHHHhhCCC
Confidence 99999999999999988865554 677777777777776665
No 21
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.3e-24 Score=212.08 Aligned_cols=334 Identities=15% Similarity=0.104 Sum_probs=287.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004339 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 126 (760)
Q Consensus 47 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 126 (760)
++-.++..|.++...|....|+..|..++...|-+..+|..|+.+... +......+...|.+ .+...-..+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~------~e~~~~l~~~l~~~---~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD------IEILSILVVGLPSD---MHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch------HHHHHHHHhcCccc---chHHHHHHH
Confidence 456788899999999999999999999999999999999999887541 12222222222211 123444566
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHH
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 206 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~ 206 (760)
+.++....+.++++.-+...+.. ..|...-+....|.+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~------------------------------------------gf~~~~~i~~~~A~~ 271 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSV------------------------------------------GFPNSMYIKTQIAAA 271 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc------------------------------------------cCCccHHHHHHHHHH
Confidence 77777788888888888887763 245666777888999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 286 (760)
.....++++|+..|+.+.+.+|-..+-.-.+..+++-.++-.+-.-+...+..++.--++....+|+.|...++.++|+.
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHH
Confidence 99999999999999999999998777777777777777766665566677888888889999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHH
Q 004339 287 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 366 (760)
Q Consensus 287 ~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 366 (760)
+|+++++++|. ...+|..+|.- |... ++...|+..|++|+.++|.+..+|++||..|..++...=|
T Consensus 352 YFkRALkLNp~-~~~aWTLmGHE-yvEm------------KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 352 YFKRALKLNPK-YLSAWTLMGHE-YVEM------------KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHHhcCcc-hhHHHHHhhHH-HHHh------------cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHH
Confidence 99999999998 89999999999 9999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHH
Q 004339 367 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 446 (760)
Q Consensus 367 ~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 446 (760)
+-+|++++...| .++.+|..||.||.++++.++|+++|.+++.. ...+..++..||.+|.++++..+|..+|+
T Consensus 418 LyYfqkA~~~kP-----nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 418 LYYFQKALELKP-----NDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred HHHHHHHHhcCC-----CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999 89999999999999999999999999999996 45567999999999999999999999999
Q ss_pred HHHHhC
Q 004339 447 RAIHLA 452 (760)
Q Consensus 447 ~al~~~ 452 (760)
+.++..
T Consensus 491 k~v~~~ 496 (559)
T KOG1155|consen 491 KYVEVS 496 (559)
T ss_pred HHHHHH
Confidence 999843
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.7e-24 Score=211.80 Aligned_cols=367 Identities=15% Similarity=0.141 Sum_probs=306.4
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP--RDAQAFIDLGE 90 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 90 (760)
++..+|..|.++...|....|+..|..++...|-+-.+|..|+.+... +......+..-| .+...-+.++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 466789999999999999999999999999999999999999887543 233334443334 34444455666
Q ss_pred HHc-cCCHhHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhh
Q 004339 91 LLI-SSDTGAALDAFKTARTL-LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 168 (760)
++. ..+.++++.-+...+.. .|.+ ..+-...|.+.+.+.++++|+..|+.+.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~-----~~i~~~~A~~~y~~rDfD~a~s~Feei~kn------------------- 291 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNS-----MYIKTQIAAASYNQRDFDQAESVFEEIRKN------------------- 291 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc-----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-------------------
Confidence 666 45788888888888877 6665 677788899999999999999999999884
Q ss_pred hHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHH
Q 004339 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 248 (760)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 248 (760)
+|-...-.-.+.++++-.++-.+-.-+-..+..++.-.+.....+|+.|.-.++.+
T Consensus 292 ------------------------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 292 ------------------------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred ------------------------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 44444444555566666555444444556666777777888888999999999999
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 249 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 249 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
+|+.+|+++++++|....+|..+|.-|+.+.+...|+..|++++.+.|. +..+|+.||.. |-.. +.
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQa-Yeim------------~M 413 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQA-YEIM------------KM 413 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHH-HHHh------------cc
Confidence 9999999999999999999999999999999999999999999999998 89999999999 9988 99
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 329 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 329 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
+.=|+-+|++++...|++...|..||.||.+.++.++|+.+|.+++.... ....+++.||.+|..++++.+|..+
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-----te~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-----TEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876 5678999999999999999999999
Q ss_pred HHHHHhhh-----cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 409 YQNCLRKF-----YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 409 ~~~al~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
|.+.+... ..+.-..+...|+..+.+.+++++|-.+...++.-.+
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 99999853 2233367778899999999999999998888877644
No 23
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.4e-24 Score=213.12 Aligned_cols=461 Identities=15% Similarity=0.152 Sum_probs=357.5
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----HHHHHH
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLE--IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-----AQAFID 87 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~ 87 (760)
.+++.+++.|....-+.+|+..|+-+++ ..|+....-.++|.++++..+|.+|+.+|+.++..-|.. ...+.+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 4688999999999999999999998875 468877888899999999999999999999999887752 345667
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhh---hcccc--h
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL---LDSKT--K 161 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~--~ 161 (760)
+|..+. .|+|+.|+..|..++...|+ ..+-++|..|++..|+-++-...|.+++.+...+.. +.... .
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn------~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPN------FIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCcc------HHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 777777 78999999999999999998 467788999999999999999999999987421110 00000 0
Q ss_pred hhhhhhhhHHHHHHhHH----------hhhhhhccCCCcc------------------CCcchHHHHHHHHHHHHHcCCH
Q 004339 162 TYVIDASASMLQFKDMQ----------LFHRFENDGNHVE------------------LPWNKVTVLFNLARLLEQIHDT 213 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~------------------~~p~~~~~~~~la~~~~~~g~~ 213 (760)
..++......-..+.+. +..+...+...+. .-|.-...-.+.+..|.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 00111000000000000 0001111111100 1111222335567778899999
Q ss_pred HHHHHHHHHHHHHcCCc-HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHH
Q 004339 214 VAASVLYRLILFKYQDY-VDAYLRLAAIAKA--RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 290 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 290 (760)
+.|++++.-.-+.+... ..+-.+|..+++. -.++..|..+...++.++.-++.++.+.|++.+..|++++|...|+.
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999988766555432 2344566666655 34788999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004339 291 ASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLF 370 (760)
Q Consensus 291 al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 370 (760)
++....+ ...+++++|.. +-.. |++++|+.+|-++..+--++..+++.++.+|..+.+..+|+++|
T Consensus 516 al~ndas-c~ealfniglt-~e~~------------~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 516 ALNNDAS-CTEALFNIGLT-AEAL------------GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred HHcCchH-HHHHHHHhccc-HHHh------------cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 9987655 78899999998 8888 99999999999998888889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 371 TQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 371 ~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
.++..+.| ++|.++..||.+|-+.|+-.+|.+++-..... .|.+.++.-+||..|....-+++|+.+|++|.-
T Consensus 582 ~q~~slip-----~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 582 MQANSLIP-----NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHhcccCC-----CCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999998 89999999999999999999999998888775 577799999999999999999999999999999
Q ss_pred hCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004339 451 LAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKH 526 (760)
Q Consensus 451 ~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (760)
+.|+.......++-|+...| +|..|..+|..+.+.- +.++.-+.-.++.|.+
T Consensus 655 iqp~~~kwqlmiasc~rrsg-------------------nyqka~d~yk~~hrkf-----pedldclkflvri~~d 706 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSG-------------------NYQKAFDLYKDIHRKF-----PEDLDCLKFLVRIAGD 706 (840)
T ss_pred cCccHHHHHHHHHHHHHhcc-------------------cHHHHHHHHHHHHHhC-----ccchHHHHHHHHHhcc
Confidence 99999988888899887766 5667777777666543 3344444444455533
No 24
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.1e-24 Score=215.16 Aligned_cols=415 Identities=17% Similarity=0.152 Sum_probs=320.8
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
+-..|...+..|+|+.|+.+|..+|.++|.|...|.+...+|..+|+|.+|+.--.+.++++|..+..|..+|..+. .|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999888 99
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---------------------CH---HHHHHHHHHHhcccc
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG---------------------EF---ESAHQSFKDALGDGI 151 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g---------------------~~---~~A~~~~~~al~~~p 151 (760)
+|++|+..|...+..+|++ ..++..++.++.... ++ +.+.......+..+|
T Consensus 85 ~~~eA~~ay~~GL~~d~~n-----~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSN-----KQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred cHHHHHHHHHHHhhcCCch-----HHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 9999999999999999997 788888887772210 01 111111122222222
Q ss_pred hhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCc------------c---------hHHHHHHHHHHHHHc
Q 004339 152 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW------------N---------KVTVLFNLARLLEQI 210 (760)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p------------~---------~~~~~~~la~~~~~~ 210 (760)
...-.... ...+......+.......+.............| + .......+|+..+..
T Consensus 160 ~~l~~~l~--d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 160 TSLKLYLN--DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred Hhhhcccc--cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 11111111 111111111111000000000000000000111 0 123456789999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh-------HHHHHHHHHHhhcCCHHH
Q 004339 211 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLGDLELKNDDWVK 283 (760)
Q Consensus 211 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~ 283 (760)
.++..|++.|..++.++ ..+..+.+.+.+|+..|.+..++.....+++...... .++..+|..|...++++.
T Consensus 238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 99999999999999999 8888899999999999999999998888877654322 244456778888899999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 004339 284 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 363 (760)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 363 (760)
|+.+|.+++..... ..+ .... ...++++.......-++|.-..-...-|..++..|+|
T Consensus 317 ai~~~~kaLte~Rt---------~~~-ls~l------------k~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 317 AIKYYQKALTEHRT---------PDL-LSKL------------KEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred HHHHHHHHhhhhcC---------HHH-HHHH------------HHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 99999998875443 222 3333 6778888888888888888777777789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHH
Q 004339 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 443 (760)
Q Consensus 364 ~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 443 (760)
..|+..|.+++..+| +++..|.|.|.||..+|.+..|+...+.++.+ +|+....|+.-|.++..+.+|++|+.
T Consensus 375 ~~Av~~YteAIkr~P-----~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDP-----EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred HHHHHHHHHHHhcCC-----chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 89999999999999999999999999999997 88889999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 444 SLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 444 ~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
.|.++++++|++..+.-.+..|+..
T Consensus 448 ay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 448 AYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999888888888654
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=9.4e-25 Score=214.42 Aligned_cols=440 Identities=14% Similarity=0.068 Sum_probs=331.1
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
..|+....-+.+|.+|++..+|.+|+.+|+.++..-|.- ..++.++|..+.+.|+|+.|+..|..++...|+...
T Consensus 232 mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a 311 (840)
T KOG2003|consen 232 MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA 311 (840)
T ss_pred ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh
Confidence 456666677899999999999999999999999988862 568889999999999999999999999999997665
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHhcc-
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAG-------EEVPIEVLNNIGVIH-----FEKGEFESAHQSFKDALGD- 149 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al~~- 149 (760)
++. |..|++ .|+-++..+.|.+.+.+-.... ...+...+.+-+.-- +...+-..|..+...+.++
T Consensus 312 ~~n-l~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kii 390 (840)
T KOG2003|consen 312 ALN-LIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKII 390 (840)
T ss_pred hhh-hhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 554 455555 8899999999999887521110 011122222222111 1112222333333322221
Q ss_pred -----------cchhhh-hcccchh---hhhhhhhHHHHHHhHHhhhhhhccCCCcc-CCcchHHHHHHHHHHHHHc--C
Q 004339 150 -----------GIWLTL-LDSKTKT---YVIDASASMLQFKDMQLFHRFENDGNHVE-LPWNKVTVLFNLARLLEQI--H 211 (760)
Q Consensus 150 -----------~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~p~~~~~~~~la~~~~~~--g 211 (760)
+.|... +...... ..+.........+...+..++..+.-... .+.....+..+|..+++.+ .
T Consensus 391 apvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk 470 (840)
T KOG2003|consen 391 APVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGK 470 (840)
T ss_pred ccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhccc
Confidence 112111 1111000 00111111111122222222221111101 1112234556666666664 4
Q ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 004339 212 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291 (760)
Q Consensus 212 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (760)
++..|..+-..++.++..++.+..+.|.+.+..|++++|...|..++..+.....+++++|..+..+|+.++|+.+|-++
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004339 292 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFT 371 (760)
Q Consensus 292 l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 371 (760)
-.+.-. +..+++.++++ |-.. .+...|+++|.++..+-|+++.++..||.+|-+.|+-.+|.+++-
T Consensus 551 h~il~n-n~evl~qiani-ye~l------------ed~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 551 HAILLN-NAEVLVQIANI-YELL------------EDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred HHHHHh-hHHHHHHHHHH-HHHh------------hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 776555 88999999999 9988 999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 372 QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 372 ~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
......| .+..+.-.||..|+...-+++|+.+|+++.-. .|+.......++.|+.+.|+|.+|...|+..-..
T Consensus 617 dsyryfp-----~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 617 DSYRYFP-----CNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hcccccC-----cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8888887 88899999999999999999999999998775 6777888889999999999999999999999999
Q ss_pred CCCChhHHhhHHHHHHHHH
Q 004339 452 APSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 452 ~p~~~~~~~~la~~~~~~~ 470 (760)
.|.+...+--|..+...+|
T Consensus 690 fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 690 FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred CccchHHHHHHHHHhcccc
Confidence 9999887776666655555
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.7e-24 Score=212.20 Aligned_cols=404 Identities=13% Similarity=0.098 Sum_probs=299.0
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCcH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-DPRDA 82 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~ 82 (760)
..+|...|+-+.-|-+++-||...|+|.+.++.+.++++++|+...+++..+.++..+|++.+|+....-.--. .-.+.
T Consensus 139 ~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~ 218 (606)
T KOG0547|consen 139 TQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNA 218 (606)
T ss_pred HHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccc
Confidence 35788999988888999999999999999999999999999999999999999999999999998765432211 11111
Q ss_pred HH-------HHHHHHHHc----cC-C-----HhHHHHHHHHHHHHHHhcCCCC--C-HHHHHHHHHHHHHc---CCHHHH
Q 004339 83 QA-------FIDLGELLI----SS-D-----TGAALDAFKTARTLLKKAGEEV--P-IEVLNNIGVIHFEK---GEFESA 139 (760)
Q Consensus 83 ~~-------~~~la~~~~----~~-~-----~~~A~~~~~~al~~~~~~~~~~--~-~~~~~~la~~~~~~---g~~~~A 139 (760)
.. +...|..-. .+ + -..-+..|-..+.-.|...... + ......-+.-+... ..|..|
T Consensus 219 s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a 298 (606)
T KOG0547|consen 219 SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKA 298 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHH
Confidence 11 111111100 00 0 0111222222222111110000 0 01100001111111 134444
Q ss_pred HHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCcc-CCcchHHHHHHHHHHHHHcCCHHHHHH
Q 004339 140 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE-LPWNKVTVLFNLARLLEQIHDTVAASV 218 (760)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~ 218 (760)
...+.+..... ...+. ...+. .-...+.++...|..++-.|++-.|..
T Consensus 299 ~~~~te~~~~~-----------------------------~~~~~--~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 299 YDKATEECLGS-----------------------------ESSLS--VNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred HHHHHHHhhhh-----------------------------hhhcc--ccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 44444433210 00000 00000 001235678888999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC
Q 004339 219 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 298 (760)
Q Consensus 219 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (760)
.|..+|.++|.....|+.+|.+|...++..+....|.++..++|.++.+|+..|.+++-++++++|+.-|++++.+.|.
T Consensus 348 d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe- 426 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE- 426 (606)
T ss_pred hHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 299 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 299 ~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
+.+++..++.+ .++. +.+..+...|+.++...|+.+.+++..|.++..+++|+.|++.|.+++.+.|
T Consensus 427 ~~~~~iQl~~a-~Yr~------------~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 427 NAYAYIQLCCA-LYRQ------------HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred hhHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 89999999999 8888 9999999999999999999999999999999999999999999999999998
Q ss_pred CCC-CCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 379 GSV-FVQMPDVWINLAHVYF-AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 379 ~~~-~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
... ..-++..+..-|.+.. -.+++..|+.++.+|+.. +|..-.++..||.+..++|+.++|+++|++++.+...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 310 0013333444443332 237999999999999996 7888999999999999999999999999999887643
No 27
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-23 Score=214.13 Aligned_cols=448 Identities=15% Similarity=0.109 Sum_probs=355.0
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-c
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-S 94 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~ 94 (760)
-+..+..-++.+.+|..|+-+-+++..+. .+|.-.+.+|.+++..|+|..|......- .+...+..+.+..+.|+. .
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHH
Confidence 34555567788889999999999998877 78888899999999999999998877665 556667888888888888 6
Q ss_pred CCHhHHHHHHHHH------HHHHHhc---------C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhh
Q 004339 95 SDTGAALDAFKTA------RTLLKKA---------G-----EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 154 (760)
Q Consensus 95 ~~~~~A~~~~~~a------l~~~~~~---------~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 154 (760)
.+++.|+..+.++ +...|.. . ......+++..|.+|..+.++.+|...|..++-..+...
T Consensus 96 k~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~ 175 (611)
T KOG1173|consen 96 KEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF 175 (611)
T ss_pred HHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH
Confidence 6888888887732 1112221 0 111345677889999999999999999999998764211
Q ss_pred hh-cccchhhhhhh----------hhHHHHHHhHH----hhhhhh-c--cC--------CCccCCcchHHHHHHHHHHHH
Q 004339 155 LL-DSKTKTYVIDA----------SASMLQFKDMQ----LFHRFE-N--DG--------NHVELPWNKVTVLFNLARLLE 208 (760)
Q Consensus 155 ~~-~~~~~~~~~~~----------~~~~~~~~~~~----~~~~l~-~--~~--------~~~~~~p~~~~~~~~la~~~~ 208 (760)
.. .......++.. ..+.+...... ++.... . -. ..+..-..++.++...+..++
T Consensus 176 Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y 255 (611)
T KOG1173|consen 176 EAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLY 255 (611)
T ss_pred HHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHH
Confidence 10 00000000000 00000000011 111000 0 00 111122345678888999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 004339 209 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 288 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 288 (760)
..++|.+..+++..++..+|.+..++.....++..+|+..+-..+-.+++..+|+.+..|+.+|..|...|.+.+|.++|
T Consensus 256 ~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred HcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999999998887766669999999998888888999999999999999999999999999999999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004339 289 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKD 368 (760)
Q Consensus 289 ~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 368 (760)
.++..+.|. ...+|+.+|.. |... +..++|+.+|..|-++.|........+|.-|...+++..|..
T Consensus 336 SKat~lD~~-fgpaWl~fghs-fa~e------------~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 336 SKATTLDPT-FGPAWLAFGHS-FAGE------------GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhhcCcc-ccHHHHHHhHH-hhhc------------chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 999999988 89999999999 8888 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-----cHHHHHHHHHHHHHhccHHHHHH
Q 004339 369 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-----DAQILLYLARTHYEAEQWQDCKK 443 (760)
Q Consensus 369 ~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~ 443 (760)
+|.+|+.+.| .+|.++..+|.+.+..+.|.+|..+|+.++....... ...++.+||.+|.+++.+.+|+.
T Consensus 402 Ff~~A~ai~P-----~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 402 FFKQALAIAP-----SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHhcCC-----CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999999 8999999999999999999999999999995432211 25568899999999999999999
Q ss_pred HHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHH
Q 004339 444 SLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVR 496 (760)
Q Consensus 444 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~ 496 (760)
+|+++|.+.|.+..++..+|.||..+| .+..|+..|.+|+-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llg------------nld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLG------------NLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhc------------ChHHHHHHHHHHHh
Confidence 999999999999999999999998887 56666666666553
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=6.5e-25 Score=227.69 Aligned_cols=305 Identities=14% Similarity=0.125 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchH
Q 004339 120 IEVLNNIGVIHFEK--GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 197 (760)
Q Consensus 120 ~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ 197 (760)
..++..+|..|... -+..+|+..|.+.-. ..++..
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~klp~-------------------------------------------h~~nt~ 353 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEKLPS-------------------------------------------HHYNTG 353 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------------------------------------------hcCCch
Confidence 45566666665554 456788888888332 344566
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 277 (760)
.++..+|+.|+.+++|++|..+|+.+-...|-.+...-.+..+++.+.+.-+--.+.+.++..+|+.|+.|..+|++|.-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 89999999999999999999999999999998888777788888888776666666778889999999999999999999
Q ss_pred cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 278 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
+++++.|+++|++++++.|. ..++|..+|.- +... ..++.|..+|+.++..+|.+..+|+++|.+|
T Consensus 434 Qkdh~~Aik~f~RAiQldp~-faYayTLlGhE-~~~~------------ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHE-SIAT------------EEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred hhHHHHHHHHHHHhhccCCc-cchhhhhcCCh-hhhh------------HHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 99999999999999999998 89999999998 8888 9999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 358 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
.++++++.|.-.|++|+.++| .+..+...+|.++.++|+.++|+.+|++|+.+ +|.++-..+..|.+++.+++
T Consensus 500 ~Kqek~e~Ae~~fqkA~~INP-----~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEINP-----SNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred eccchhhHHHHHHHhhhcCCc-----cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHHhhcc
Confidence 999999999999999999999 88999999999999999999999999999996 89999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004339 438 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNL 507 (760)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~~ 507 (760)
+.+|+..+++...+.|++..+++-+|.+|..++ ....|+..|.......|+
T Consensus 573 ~~eal~~LEeLk~~vP~es~v~~llgki~k~~~-------------------~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 573 YVEALQELEELKELVPQESSVFALLGKIYKRLG-------------------NTDLALLHFSWALDLDPK 623 (638)
T ss_pred hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc-------------------cchHHHHhhHHHhcCCCc
Confidence 999999999999999999999999999998877 345566666666655554
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.1e-24 Score=225.94 Aligned_cols=308 Identities=17% Similarity=0.196 Sum_probs=256.7
Q ss_pred HHHHHHHHHHc-c--CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhccc
Q 004339 83 QAFIDLGELLI-S--SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 159 (760)
Q Consensus 83 ~~~~~la~~~~-~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 159 (760)
..+..+|..|. . -+..+|+..|.+.-...++. ..++..+|..|+.+++|++|..+|+.+-...|
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt-----~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p-------- 384 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNT-----GWVLSQLGRAYFELIEYDQAERIFSLVRRIEP-------- 384 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------
Confidence 44556666665 2 26788999998844444443 68889999999999999999999999987544
Q ss_pred chhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 004339 160 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 239 (760)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 239 (760)
-.....-.+..++..+.+--.---+.+.++..+|..+..|..+|.
T Consensus 385 -----------------------------------~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GN 429 (638)
T KOG1126|consen 385 -----------------------------------YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGN 429 (638)
T ss_pred -----------------------------------ccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcc
Confidence 233333333444444444333334456667788999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 004339 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 319 (760)
Q Consensus 240 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~ 319 (760)
||..+++++.|+.+|+++++++|....+|..+|.=+....+++.|..+|+.++...|. .-.+|+.+|.+ |.++
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~v-y~Kq----- 502 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTV-YLKQ----- 502 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhh-eecc-----
Confidence 9999999999999999999999999999999999999999999999999999998887 78899999999 9988
Q ss_pred cCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc
Q 004339 320 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 399 (760)
Q Consensus 320 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~ 399 (760)
++++.|.-+|++|+.++|.+......+|.++...|+.++|+.+|++|+.++| .++...+..|.+++.+
T Consensus 503 -------ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-----kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 503 -------EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-----KNPLCKYHRASILFSL 570 (638)
T ss_pred -------chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-----CCchhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999998 8888899999999999
Q ss_pred CCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 400 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 400 g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
++|.+|+..++..-.. .|.+..+++.+|.+|..+|+.+.|+..|.-|..++|.-..+.
T Consensus 571 ~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~ 628 (638)
T KOG1126|consen 571 GRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQ 628 (638)
T ss_pred cchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchhh
Confidence 9999999999998886 678899999999999999999999999999999999765533
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4.2e-23 Score=222.69 Aligned_cols=271 Identities=19% Similarity=0.174 Sum_probs=158.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004339 50 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 128 (760)
Q Consensus 50 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 128 (760)
..+.+|..+...|++++|+..|.+++..+|+++.++..+|.++. .|++..|+..++.++...+.. ......++..+|.
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT-REQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555444 445555555555444321100 0001345677777
Q ss_pred HHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHH
Q 004339 129 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 208 (760)
Q Consensus 129 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~ 208 (760)
+|...|+++.|+.+|.+++. ..|....++..++.++.
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~-------------------------------------------~~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVD-------------------------------------------EGDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHc-------------------------------------------CCcchHHHHHHHHHHHH
Confidence 77778888888888777765 34455667777777777
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHH
Q 004339 209 QIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 283 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 283 (760)
..|++++|+..|..++...|... ..+..+|.++...|++++|+.+|.+++...|.+..+++.+|.++...|++++
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence 77888888777777777666432 2345666667777777777777777777777766666677777777777777
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 004339 284 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 363 (760)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 363 (760)
|+..|.+++...|.....++..++.+ |... |+++.|+.++++++...|+...+ ..+|.++...|++
T Consensus 233 A~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~ 298 (389)
T PRK11788 233 AIEALERVEEQDPEYLSEVLPKLMEC-YQAL------------GDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGP 298 (389)
T ss_pred HHHHHHHHHHHChhhHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCH
Confidence 77766666665444223334444444 4444 55555555555555555543322 4455555555555
Q ss_pred HHHHHHHHHHHHHhc
Q 004339 364 DVSKDLFTQVQEAAS 378 (760)
Q Consensus 364 ~~A~~~~~~al~~~p 378 (760)
++|+.+|.+++...|
T Consensus 299 ~~A~~~l~~~l~~~P 313 (389)
T PRK11788 299 EAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHHHHHhCc
Confidence 555555555555544
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=2e-22 Score=215.26 Aligned_cols=450 Identities=16% Similarity=0.153 Sum_probs=284.8
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
+..++..|..++..|++++|..++..+|+.+|.++.+|+.||.+|.++|+..+|+..+-.|..++|.+...|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 44566677777777777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccch--------------------
Q 004339 94 -SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW-------------------- 152 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------------------- 152 (760)
+|++..|+-+|.+|++..|.+ ....+..+.+|.+.|++..|+..|.+++..+|.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n-----~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSN-----WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 566777777777777777665 566666666666666666666666666665440
Q ss_pred ----------------------hhhhcccchhhhh----hhhhHHH----------------------------------
Q 004339 153 ----------------------LTLLDSKTKTYVI----DASASML---------------------------------- 172 (760)
Q Consensus 153 ----------------------~~~~~~~~~~~~~----~~~~~~~---------------------------------- 172 (760)
.+.+......++. +.+.-.+
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 0000000000000 0000000
Q ss_pred ---------------HHHhHHhhhhhhccCCCcc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CcHHHHH
Q 004339 173 ---------------QFKDMQLFHRFENDGNHVE-LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYL 235 (760)
Q Consensus 173 ---------------~~~~~~~~~~l~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~ 235 (760)
..........+..+...-. .....+..++.++.+|...|++..|+.+|..++...+ .+..+|+
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 0000000111110000000 1334567899999999999999999999999997655 4567899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC--------Ch-------
Q 004339 236 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK--------DS------- 300 (760)
Q Consensus 236 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~------- 300 (760)
.+|.||..+|.++.|+.+|.+++...|++.++...|+.++..+|++++|.+.+..+....+.. ..
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876332110 00
Q ss_pred HHHHHHHHH------------HHHHHHhh-h---h------cC--------------------------------c----
Q 004339 301 YATLSLGNW------------NYFAALRN-E---K------RA--------------------------------P---- 322 (760)
Q Consensus 301 ~~~~~lg~~------------~y~~~~~~-~---~------~~--------------------------------~---- 322 (760)
..+...|.. .+...... . + .. .
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 000000000 00000000 0 0 00 0
Q ss_pred ----------------------hHHhhcHHHHHHHH----------------------------------------HHHH
Q 004339 323 ----------------------KLEATHLEKAKELY----------------------------------------TRVI 340 (760)
Q Consensus 323 ----------------------~~~~~~~~~A~~~~----------------------------------------~~al 340 (760)
....+.+.+|+.+. +-++
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 00012223333333 2222
Q ss_pred hh-----CCCCHHHHH-----------------------------------HHHHHHHHcCChHHHHHHHHHHHHHhcCC
Q 004339 341 VQ-----HTSNLYAAN-----------------------------------GAGVVLAEKGQFDVSKDLFTQVQEAASGS 380 (760)
Q Consensus 341 ~~-----~p~~~~~~~-----------------------------------~la~~~~~~g~~~~A~~~~~~al~~~p~~ 380 (760)
.. +|.....|+ ..|..+...+.|.-|+..|.++...+|
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~p-- 771 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNP-- 771 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCC--
Confidence 22 222222222 134444456688999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHc--C--------CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 381 VFVQMPDVWINLAHVYFAQ--G--------NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 381 ~~~~~~~~~~~la~~~~~~--g--------~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
++|-+.+.+|..+..+ + ..-+++.++.+..++......-+++|++|++|...|=..-|+.+|+++|.
T Consensus 772 ---d~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 772 ---DSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 7777777666665543 2 24566777776666532223488999999999999999999999999999
Q ss_pred hCCCC------------hhHHhhHHHHHHHHHHhH
Q 004339 451 LAPSN------------YTLRFDAGVAMQKFSAST 473 (760)
Q Consensus 451 ~~p~~------------~~~~~~la~~~~~~~~~~ 473 (760)
+.|.. ..+-|||.++|+..|..+
T Consensus 849 ~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~ 883 (895)
T KOG2076|consen 849 VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQ 883 (895)
T ss_pred CCccccccccCCcccHHHHHHhhhhhhhccCCcHH
Confidence 97644 357788899988877433
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=2.8e-22 Score=214.24 Aligned_cols=327 Identities=19% Similarity=0.220 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 126 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 126 (760)
...++..|..++..|++++|..++..+++.+|.++.+|+.||.+|. +|+..+++..+-.|-.++|++ ...|..+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d-----~e~W~~l 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD-----YELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC-----hHHHHHH
Confidence 4567778888888899999999999999999999999999999999 889999999999999999997 7999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHH
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 206 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~ 206 (760)
+.....+|++..|+-+|.++++ ..|.+....+..+.+
T Consensus 214 adls~~~~~i~qA~~cy~rAI~-------------------------------------------~~p~n~~~~~ers~L 250 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQ-------------------------------------------ANPSNWELIYERSSL 250 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHh-------------------------------------------cCCcchHHHHHHHHH
Confidence 9999999999999999999998 566777888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCChHHHHHHHHHHhhcC
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDY-----VDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLGDLELKND 279 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 279 (760)
|.+.|++..|...|.+++...|.. .......+..+...+.-+.|+..+..++... ......+..++.+++...
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~ 330 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNK 330 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhH
Confidence 888888888888888888888721 1122334566666666677777777777632 223334556666666666
Q ss_pred CHHHHHHHHHHhhh---------------------------------------------------------------cCC
Q 004339 280 DWVKAKETFRAASD---------------------------------------------------------------ATD 296 (760)
Q Consensus 280 ~~~~A~~~~~~al~---------------------------------------------------------------~~~ 296 (760)
.++.|......... ..+
T Consensus 331 q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~ 410 (895)
T KOG2076|consen 331 QSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWV 410 (895)
T ss_pred HHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCCh
Confidence 67666665544333 111
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004339 297 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQE 375 (760)
Q Consensus 297 ~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 375 (760)
...+..++.++.+ |... |++..|+.+|..++...+. +..+|+.+|.||..+|.++.|+.+|.+++.
T Consensus 411 ~d~~dL~~d~a~a-l~~~------------~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 411 SDDVDLYLDLADA-LTNI------------GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred hhhHHHHHHHHHH-HHhc------------ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 1122222233333 3333 5555555555555544332 344555555665555556666666666555
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------hcCCCcHHHHHHHHHHHHHhccHHH
Q 004339 376 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK-------FYYNTDAQILLYLARTHYEAEQWQD 440 (760)
Q Consensus 376 ~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~la~~~~~~g~~~~ 440 (760)
..| .+.++...|+.++..+|+.++|.+.+.....- +..+++..+...+..+|...|+.++
T Consensus 478 ~~p-----~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 478 LAP-----DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred cCC-----CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 555 55555555555555566555555555553310 0111224445555555555555555
No 33
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.92 E-value=1.9e-20 Score=193.17 Aligned_cols=503 Identities=13% Similarity=0.107 Sum_probs=310.0
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI- 93 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 93 (760)
..+|..+.-++..++|...+...+.+++..|.+++.+...|..+..+|+..+|..+...++..++.+..+|..+|.++.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 3567777777778888888888888888888888888888888888888888888888888888878888888887777
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
..+|.+|+.+|+.|+.+.|++ ..+|..++.+..++++++.....-.+.++..|..............-.+.....
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN-----~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDN-----LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 447888888888888887776 777888888888888887777777777764442111111110000000001011
Q ss_pred HHhHHhhhhhhccCCCccCCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWN-----KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 248 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 248 (760)
......+.. .....|. ...+......++...|.++.|++.+...-..--+........+.++..+++++
T Consensus 163 ~~il~ef~~------t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 163 LEILEEFEK------TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHH------hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence 011111111 1101111 12344445556666677666666665544333344445556677777777777
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH-HHHHHhhhcCCCCChHHHHHHHHHH---H----HHHHhhh--
Q 004339 249 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK-ETFRAASDATDGKDSYATLSLGNWN---Y----FAALRNE-- 318 (760)
Q Consensus 249 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~lg~~~---y----~~~~~~~-- 318 (760)
+|..+|...+..+|++...+..+-.++....+..+++ ..|...-...|.......+.+..+. + ...++..
T Consensus 237 eA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 237 EAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 7777777777777777776666666654222333343 4444444444433333322222220 0 0000000
Q ss_pred hcCchH-----H-hhcHHHHHHHHHHHH-------hhC------------CCC--HHHHHHHHHHHHHcCChHHHHHHHH
Q 004339 319 KRAPKL-----E-ATHLEKAKELYTRVI-------VQH------------TSN--LYAANGAGVVLAEKGQFDVSKDLFT 371 (760)
Q Consensus 319 ~~~~~~-----~-~~~~~~A~~~~~~al-------~~~------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~ 371 (760)
++.|.. . -.+....- +.++.+ .-. |.. .+.++.++.-+-..|+++.|..++.
T Consensus 317 Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 317 KGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred cCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000100 0 01111111 222222 111 222 2345567777889999999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 372 QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 372 ~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
.++...| +.++.+..-|.++...|.++.|..++..+..+ +..|..+-...|....+.++.++|...+.+.-.-
T Consensus 396 ~AIdHTP-----TliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 396 LAIDHTP-----TLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHhccCc-----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 9999998 88999999999999999999999999999986 5566666667888899999999999988876554
Q ss_pred CCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCHH--HHHHHHHHH--HHH
Q 004339 452 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEK--KINTHVEYC--KHL 527 (760)
Q Consensus 452 ~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~--~~~ 527 (760)
.- +..-..+...|++.+- .-+.+...+..+..|+..+...-++|..++...-. ++.++++ .++..+.+. .+.
T Consensus 469 ~~-~~~~~L~~mqcmWf~~--E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfD-fhtyc~rk~tlrsYv~ll~~~d~ 544 (700)
T KOG1156|consen 469 GF-GAVNNLAEMQCMWFQL--EDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFD-FHTYCMRKGTLRSYVELLEWEDN 544 (700)
T ss_pred cc-chhhhHHHhhhHHHhH--hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh-HHHHHHhcCcHHHHHHHHHHHHh
Confidence 43 3333333334443332 12445555567888999999999999999987765 6777777 445555444 455
Q ss_pred HHHHHHHHHHHHH
Q 004339 528 LDAAKIHREAAER 540 (760)
Q Consensus 528 l~~~~~~~~~~~~ 540 (760)
|......+++++.
T Consensus 545 L~~~p~y~~Aa~~ 557 (700)
T KOG1156|consen 545 LRSSPYYLRAAKG 557 (700)
T ss_pred hccChHHHHHHHH
Confidence 5555555555544
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=3.9e-21 Score=197.37 Aligned_cols=377 Identities=16% Similarity=0.145 Sum_probs=271.0
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
-..|+.-++.+...+.++-|+.+|..+|+.+|.....|...+..--.-|..+.-..+|++++...|.....|+.++..++
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHH
Q 004339 94 -SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 172 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 172 (760)
.|+...|...+..++..+|++ .++|+.-..+.+....++.|..+|.++....
T Consensus 596 ~agdv~~ar~il~~af~~~pns-----eeiwlaavKle~en~e~eraR~llakar~~s---------------------- 648 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNS-----EEIWLAAVKLEFENDELERARDLLAKARSIS---------------------- 648 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCc-----HHHHHHHHHHhhccccHHHHHHHHHHHhccC----------------------
Confidence 677777777777777777775 6777777777777777777777777776422
Q ss_pred HHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHH
Q 004339 173 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
....+|+..+.+...+++.++|+.+++.+++.+|.+...|+.+|+++.+.++.+.|..
T Consensus 649 ----------------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 649 ----------------------GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred ----------------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 2445677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHH
Q 004339 253 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 332 (760)
Q Consensus 253 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 332 (760)
.|...++..|+.+.+|..|+.+-...|....|..+|.++.-.+|. +...|+....+ -++. |+.+.|
T Consensus 707 aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~-ElR~------------gn~~~a 772 (913)
T KOG0495|consen 707 AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRM-ELRA------------GNKEQA 772 (913)
T ss_pred HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHH-HHHc------------CCHHHH
Confidence 777777777777777777777777777777777777777777776 56666555555 4555 777777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
..+..++|+..|++...|..-..+.-.-++-..+++.+.++ . .++.+++.+|.+++...+++.|...|.++
T Consensus 773 ~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc----e-----~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 773 ELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC----E-----HDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred HHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc----c-----CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776665555555555544444444433 2 56777777888888888888888888888
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHH
Q 004339 413 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 464 (760)
++. .|.+.++|.++-..+...|.-++-.+.|.++..-.|.+...|..+..
T Consensus 844 vk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 844 VKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred Hcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 876 44445555566666777777777777788877778877777765544
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=9.3e-22 Score=212.20 Aligned_cols=302 Identities=16% Similarity=0.084 Sum_probs=248.1
Q ss_pred HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 83 QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 83 ~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
...+.+|..+. .|+++.|+..|.+++...|.+ +.++..+|.++...|+++.|+..+..++...+.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------- 101 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET-----VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDL--------- 101 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC---------
Confidence 34455566666 789999999999999998876 789999999999999999999999988763110
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 241 (760)
.......++..+|.+|...|+++.|+.+|.+++...|....++..++.++
T Consensus 102 ------------------------------~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 151 (389)
T PRK11788 102 ------------------------------TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIY 151 (389)
T ss_pred ------------------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 01123457889999999999999999999999998898899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCChH-----HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHh
Q 004339 242 KARNNLQLSIELVNEALKVNGKYPN-----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 316 (760)
Q Consensus 242 ~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~ 316 (760)
...|++++|+..+..++...|.+.. .+..+|.++...|++++|+.+|.+++...|. ...+++.+|.+ |...
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~-~~~~-- 227 (389)
T PRK11788 152 QQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDL-ALAQ-- 227 (389)
T ss_pred HHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHH-HHHC--
Confidence 9999999999999999988876532 5567888999999999999999999988876 67788889998 8888
Q ss_pred hhhcCchHHhhcHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 004339 317 NEKRAPKLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 317 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~ 395 (760)
|++++|+.+|.+++..+|.+ ..++..++.+|...|++++|+..+.+++...| +.. .+..+|.+
T Consensus 228 ----------g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-----~~~-~~~~la~~ 291 (389)
T PRK11788 228 ----------GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-----GAD-LLLALAQL 291 (389)
T ss_pred ----------CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----Cch-HHHHHHHH
Confidence 99999999999999988876 45678899999999999999999999999887 443 44889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHHH
Q 004339 396 YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE--AEQWQDCKKSLLRAIH 450 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 450 (760)
+...|++++|+..|.+++.. .|.+..+...++..+.. .|+..+|+..+++.+.
T Consensus 292 ~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 292 LEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999999999999999986 45555444444433322 4578888887776664
No 36
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=3.3e-21 Score=202.70 Aligned_cols=419 Identities=17% Similarity=0.125 Sum_probs=339.8
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLG 89 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 89 (760)
+++..|-.+...+...|+|..+.++|++++...-...+.|+.++.+|...|.-..|+.+++..+... |.++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4566777889999999999999999999998887888999999999999999999999999999998 88888888888
Q ss_pred HHHc--cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhcccchhhhh
Q 004339 90 ELLI--SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK-----------GEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 90 ~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
.++. .+.+.+++.+..+++...........+..+..+|.+|..+ ....++++.++++++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-------- 472 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-------- 472 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh--------
Confidence 7766 4689999999999999664443444678888888888654 234567777777766
Q ss_pred cccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCcHHHHH
Q 004339 157 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYL 235 (760)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 235 (760)
.+|.++.+.|.++.-|..+++...|..+..+++..+ .+.+.+|.
T Consensus 473 -----------------------------------~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~wh 517 (799)
T KOG4162|consen 473 -----------------------------------FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWH 517 (799)
T ss_pred -----------------------------------cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHH
Confidence 678889999999999999999999999999999994 57889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHH
Q 004339 236 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 315 (760)
Q Consensus 236 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~ 315 (760)
.++.++...+++..|+.+...++...|.|.........+-...++.++|+..+...+..... ...+-..++.....+.
T Consensus 518 LLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~-~~~~q~~~~~g~~~~l- 595 (799)
T KOG4162|consen 518 LLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEA-EYGVQQTLDEGKLLRL- 595 (799)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHh-hhhHhhhhhhhhhhhh-
Confidence 99999999999999999999999999999888888888888899999999999888876543 1111122222201110
Q ss_pred hhhhcCchHHhhcHHHHHHHHHHHHhh---------------------CCCC-----HHHHHHHHHHHHHcCChHHHHHH
Q 004339 316 RNEKRAPKLEATHLEKAKELYTRVIVQ---------------------HTSN-----LYAANGAGVVLAEKGQFDVSKDL 369 (760)
Q Consensus 316 ~~~~~~~~~~~~~~~~A~~~~~~al~~---------------------~p~~-----~~~~~~la~~~~~~g~~~~A~~~ 369 (760)
+........+...|+..+..+... .|.. ...|...+..+...++.++|..+
T Consensus 596 ---k~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~C 672 (799)
T KOG4162|consen 596 ---KAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSC 672 (799)
T ss_pred ---hcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 000001112333333333333211 1221 23577788888999999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHH--HHHH
Q 004339 370 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK--SLLR 447 (760)
Q Consensus 370 ~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~ 447 (760)
+..+-.+.| ..+.+|+..|.++...|++.+|...|..++.. +|.++.+...+|.++...|+..-|.. .+..
T Consensus 673 L~Ea~~~~~-----l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 673 LLEASKIDP-----LSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred HHHHHhcch-----hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 999999998 88999999999999999999999999999996 88999999999999999999888888 9999
Q ss_pred HHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHH
Q 004339 448 AIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRV 497 (760)
Q Consensus 448 al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~ 497 (760)
|++++|.++.+||.+|.++...| ++..|...|..|+.+
T Consensus 746 alr~dp~n~eaW~~LG~v~k~~G------------d~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 746 ALRLDPLNHEAWYYLGEVFKKLG------------DSKQAAECFQAALQL 783 (799)
T ss_pred HHhhCCCCHHHHHHHHHHHHHcc------------chHHHHHHHHHHHhh
Confidence 99999999999999999999888 677777777777653
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=5.7e-21 Score=215.98 Aligned_cols=422 Identities=11% Similarity=-0.011 Sum_probs=315.2
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+.+..+|.++.+.+.++.++...|++.+|+.++++++...|.....+..+|.++...|++++|+.+|++++..+|+++.+
T Consensus 59 qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~ 138 (822)
T PRK14574 59 EESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDL 138 (822)
T ss_pred HHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 56778899865555889999999999999999999994444556666666889999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
+..++.++. .+++.+|+..+.+++..+|.. ..+..++.++...+++.+|+..|++++...|............
T Consensus 139 l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~------~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~ 212 (822)
T PRK14574 139 ISGMIMTQADAGRGGVVLKQATELAERDPTV------QNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEI 212 (822)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcccCcch------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999988888 789999999999999998874 3335667777778888789999999999988544332211111
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHc---C
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH------------DTVAASVLYRLILFKY---Q 228 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~~~~~l~~~---p 228 (760)
+...+..... ..+..... .+-...+...+....+.-..+.+ -.+.|+..+..++... |
T Consensus 213 l~~~~~~~~a---~~l~~~~p----~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p 285 (822)
T PRK14574 213 LQRNRIVEPA---LRLAKENP----NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDP 285 (822)
T ss_pred HHHcCCcHHH---HHHHHhCc----cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCC
Confidence 1111111000 00000000 00000111111111111111111 3456778888888743 4
Q ss_pred Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC-----
Q 004339 229 DY----VDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK----- 298 (760)
Q Consensus 229 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----- 298 (760)
.. ..+..-.-.++...|++.+++..|+.+.... |-.+.+....|..|+..+++.+|+.+|..++...+..
T Consensus 286 ~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~ 365 (822)
T PRK14574 286 EAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSD 365 (822)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCc
Confidence 22 3344455667788999999999999887655 3345588899999999999999999999998755321
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCh
Q 004339 299 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT---------------SNLYAANGAGVVLAEKGQF 363 (760)
Q Consensus 299 ~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~ 363 (760)
+......|... |+.. +++++|..++.+.....| +...+...++.++...|++
T Consensus 366 ~~~~~~~L~yA-~ld~------------e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 366 DLLDADDLYYS-LNES------------EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred chHHHHHHHHH-HHhc------------ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 22223445444 5555 999999999999988544 3345777899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHH
Q 004339 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 443 (760)
Q Consensus 364 ~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 443 (760)
.+|...++..+...| .++.++..+|.++...|.+..|...++.++.. .|.+..+.+.+|.++..+|++.+|..
T Consensus 433 ~~Ae~~le~l~~~aP-----~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 433 PTAQKKLEDLSSTAP-----ANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999999 88999999999999999999999999888886 78889999999999999999999999
Q ss_pred HHHHHHHhCCCChhHH
Q 004339 444 SLLRAIHLAPSNYTLR 459 (760)
Q Consensus 444 ~~~~al~~~p~~~~~~ 459 (760)
....++...|+++.+.
T Consensus 506 ~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 506 LTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhhCCCchhHH
Confidence 9999999999998543
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=3.5e-20 Score=190.47 Aligned_cols=430 Identities=15% Similarity=0.120 Sum_probs=339.3
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
-+++...|+++..|- ......+.+.|+.++.++++..|.+.+.|..|+.+ .-|..|...+.++-+.-|.++.
T Consensus 370 RKALe~iP~sv~LWK----aAVelE~~~darilL~rAveccp~s~dLwlAlarL----etYenAkkvLNkaRe~iptd~~ 441 (913)
T KOG0495|consen 370 RKALEHIPRSVRLWK----AAVELEEPEDARILLERAVECCPQSMDLWLALARL----ETYENAKKVLNKAREIIPTDRE 441 (913)
T ss_pred HHHHHhCCchHHHHH----HHHhccChHHHHHHHHHHHHhccchHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCChh
Confidence 356777787765443 33455666779999999999999888888777655 5588888899999888899998
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcC-------------------------------------CCCCHHHHHH
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAG-------------------------------------EEVPIEVLNN 125 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~-------------------------------------~~~~~~~~~~ 125 (760)
.|+.-+.+-. +|+.+....+..+++.-...++ ....-..|+.
T Consensus 442 IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~ 521 (913)
T KOG0495|consen 442 IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLD 521 (913)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhh
Confidence 8888888776 6777777777666654433332 2335678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~ 205 (760)
-+..+...+.++-|+.+|..+++..|....+......+ .. .+.... .-...+.+++...|.....|...+.
T Consensus 522 da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~--ek-----~hgt~E--sl~Allqkav~~~pkae~lwlM~ak 592 (913)
T KOG0495|consen 522 DAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMF--EK-----SHGTRE--SLEALLQKAVEQCPKAEILWLMYAK 592 (913)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHH--HH-----hcCcHH--HHHHHHHHHHHhCCcchhHHHHHHH
Confidence 99999999999999999999998776322221110000 00 000000 0001112333466777788888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
.+...|+...|..++..++..+|++..+|+.-..+......++.|..+|.++....| ...+|+..+.+...+++.++|+
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHH
Confidence 999999999999999999999999999999888888999999999999998887655 3668888888888889999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 004339 286 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365 (760)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 365 (760)
.+++.+++.+|. ..-.|+.+|.+ +-.. ++.+.|...|...++..|+.+..|..|+.+-...|..-.
T Consensus 672 rllEe~lk~fp~-f~Kl~lmlGQi-~e~~------------~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 672 RLLEEALKSFPD-FHKLWLMLGQI-EEQM------------ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHHHHHhCCc-hHHHHHHHhHH-HHHH------------HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 999999999887 78888899999 8888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC--------------------------
Q 004339 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-------------------------- 419 (760)
Q Consensus 366 A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------- 419 (760)
|..++.++.-.+| .++..|+....+-++.|+.+.|...+.+|++.||.+
T Consensus 738 AR~ildrarlkNP-----k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk 812 (913)
T KOG0495|consen 738 ARSILDRARLKNP-----KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK 812 (913)
T ss_pred HHHHHHHHHhcCC-----CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh
Confidence 9999999999888 788899999999999999999999999988876544
Q ss_pred --CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 420 --TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 420 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.|+.++..+|..++...++++|..+|.++++++|++..+|..+-..+...|
T Consensus 813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 347788899999999999999999999999999999999887766655555
No 39
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.91 E-value=3e-19 Score=207.66 Aligned_cols=371 Identities=12% Similarity=0.060 Sum_probs=260.2
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP--DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 89 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (760)
.+...+..+-..+.+.|++..|+.+|+.+...+. .+...+..+..++...|.+..|+.+|..... | +...|..+-
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHH
Confidence 3455566677778889999999999999987653 3444555666778888999999998887654 5 455666666
Q ss_pred HHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhh
Q 004339 90 ELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168 (760)
Q Consensus 90 ~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 168 (760)
..+. .|+++.|...|..+....... ...+|..+..+|.+.|+++.|..+|..+...+
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~p----D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------------------ 502 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKA----DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------------------ 502 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------------------
Confidence 6666 789999999999887653321 37889999999999999999999999987643
Q ss_pred hHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHcCCH
Q 004339 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNL 247 (760)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~ 247 (760)
..| +..+|..+...|.+.|++++|+.+|..+.... ..+..+|..+...|.+.|++
T Consensus 503 -----------------------v~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 503 -----------------------VEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred -----------------------CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 222 45566667777777777777777777776543 12455677777777777777
Q ss_pred HHHHHHHHHHHHH----cCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCch
Q 004339 248 QLSIELVNEALKV----NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 323 (760)
Q Consensus 248 ~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~ 323 (760)
++|..+|..+... .| +..+|..+...|.+.|++++|..+|..+.......+...|..+... |...
T Consensus 559 deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a-y~k~--------- 627 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS-CSQK--------- 627 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH-HHhc---------
Confidence 7777777777642 23 3456666666777777777777777777766544466666667666 6666
Q ss_pred HHhhcHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCC
Q 004339 324 LEATHLEKAKELYTRVIVQ--HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 401 (760)
Q Consensus 324 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~ 401 (760)
|+++.|+.+|..+... .| +...|..+...|...|++++|..+|..+..... ..+..+|..+..+|.+.|+
T Consensus 628 ---G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~----~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 628 ---GDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGI----KLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred ---CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhCCC
Confidence 7777777777776654 33 355677777777777777777777777766432 1346667777777777777
Q ss_pred HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 402 FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 402 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
+++|+.+|+.+... ...++...|..+...|.+.|++++|+.+|..+...
T Consensus 700 ~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 700 WKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 77777777776553 23455667777777777777777777777766543
No 40
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.91 E-value=6.6e-21 Score=181.59 Aligned_cols=348 Identities=18% Similarity=0.121 Sum_probs=216.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 004339 46 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLN 124 (760)
Q Consensus 46 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 124 (760)
.++.-++.+|.-++..|++..|+..|..++..+|++..+++..|.+|. .|+..-|+.-+.+++++.|+. ..+..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-----~~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-----MAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-----HHHHH
Confidence 344455555555555555555555555555555555555555555555 455555555555555555554 45555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHH
Q 004339 125 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 204 (760)
Q Consensus 125 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la 204 (760)
..|.+++.+|.++.|..-|..++...|......... +.+ ........+....
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaq---------skl-------------------~~~~e~~~l~~ql 162 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQ---------SKL-------------------ALIQEHWVLVQQL 162 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHH---------HHH-------------------HhHHHHHHHHHHH
Confidence 555666666666666666666555443211100000 000 0001123344455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHH
Q 004339 205 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 284 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 284 (760)
..+...|++..|+.+...++++.|-++..+...+.||...|.+..|+..+..+-++..++.+.++.++.+++..|+...+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 56667788889999999999999988888888999999999999999999988888888889999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH
Q 004339 285 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 364 (760)
Q Consensus 285 ~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 364 (760)
+...+..++++|... ..+-. |-.. ....+.+...++ ....+.|.
T Consensus 243 L~~iRECLKldpdHK-~Cf~~-----YKkl------------kKv~K~les~e~------------------~ie~~~~t 286 (504)
T KOG0624|consen 243 LKEIRECLKLDPDHK-LCFPF-----YKKL------------KKVVKSLESAEQ------------------AIEEKHWT 286 (504)
T ss_pred HHHHHHHHccCcchh-hHHHH-----HHHH------------HHHHHHHHHHHH------------------HHhhhhHH
Confidence 999999988887631 11100 1111 222222222222 23445666
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 004339 365 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKS 444 (760)
Q Consensus 365 ~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 444 (760)
+++...+++++..|.... -....+-.+..|+..-|++.+||..+..++.. .|.++.++...+.+|.--..|+.|+..
T Consensus 287 ~cle~ge~vlk~ep~~~~-ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~d 363 (504)
T KOG0624|consen 287 ECLEAGEKVLKNEPEETM-IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHD 363 (504)
T ss_pred HHHHHHHHHHhcCCcccc-eeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 666777777766662110 11234445566777777777777777777774 566677777777777777777777777
Q ss_pred HHHHHHhCCCChhHHhhHHHH
Q 004339 445 LLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 445 ~~~al~~~p~~~~~~~~la~~ 465 (760)
|++|.+.+|++..+.-.+-.+
T Consensus 364 ye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 364 YEKALELNESNTRAREGLERA 384 (504)
T ss_pred HHHHHhcCcccHHHHHHHHHH
Confidence 777777777777666655443
No 41
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.5e-21 Score=193.85 Aligned_cols=371 Identities=17% Similarity=0.167 Sum_probs=294.2
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
+.+|..+|.+...|-....+|...|+|.+|+.--.+.++++|..+.+|..+|..+.-+|+|++|+..|.+.|..+|++..
T Consensus 26 t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~ 105 (539)
T KOG0548|consen 26 TEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQ 105 (539)
T ss_pred HHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHH
Confidence 56888999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-c-----------------C----CHhHHHHHHHHHHHHHHhcCCCC-----------------------
Q 004339 84 AFIDLGELLI-S-----------------S----DTGAALDAFKTARTLLKKAGEEV----------------------- 118 (760)
Q Consensus 84 ~~~~la~~~~-~-----------------~----~~~~A~~~~~~al~~~~~~~~~~----------------------- 118 (760)
.+.+++.++. . + ++...-..|...+...+.++...
T Consensus 106 L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~ 185 (539)
T KOG0548|consen 106 LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELL 185 (539)
T ss_pred HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccc
Confidence 9888887763 1 0 11112223333333333221000
Q ss_pred -------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 119 -------------------------------------PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 119 -------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
.......+|...+...++..|++.|..++.
T Consensus 186 ~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e------------- 252 (539)
T KOG0548|consen 186 FYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE------------- 252 (539)
T ss_pred ccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh-------------
Confidence 011233445555555555555555555554
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-------HHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-------VDAY 234 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~ 234 (760)
++ .....+.+.+-+|+..|.+...+.....+++..... ..+.
T Consensus 253 ------------------------------l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~ 301 (539)
T KOG0548|consen 253 ------------------------------LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL 301 (539)
T ss_pred ------------------------------Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence 55 677788899999999999999999888888665432 2334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHH
Q 004339 235 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314 (760)
Q Consensus 235 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~ 314 (760)
.++|..|...++++.|+.+|.+++..... ..+.......++++.......-+.|. .......-|+. +|..
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe-~A~e~r~kGne-~Fk~ 371 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPE-KAEEEREKGNE-AFKK 371 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChh-HHHHHHHHHHH-HHhc
Confidence 45677788889999999999998876554 45556666778888887777767666 35555666888 8888
Q ss_pred HhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 004339 315 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 394 (760)
Q Consensus 315 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~ 394 (760)
|+|..|+..|.++|..+|+++.+|.+.|.||..+|.+..|+...+.+++++| +....|+.-|.
T Consensus 372 ------------gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-----~~~kgy~RKg~ 434 (539)
T KOG0548|consen 372 ------------GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-----NFIKAYLRKGA 434 (539)
T ss_pred ------------cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-----hHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004339 395 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLR 447 (760)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 447 (760)
++..+.+|+.|+..|+.++.. +|.+.++.-.+.+|+..+.......+.+++
T Consensus 435 al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999999999999999996 788899999999998876555555555555
No 42
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=4e-19 Score=206.64 Aligned_cols=423 Identities=12% Similarity=0.043 Sum_probs=335.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHc-c
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELLI-S 94 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~-~ 94 (760)
+..+...+...|.+..|..+|..+.. | +..+|..+..+|...|+++.|..+|..+...... +...|..+..+|. .
T Consensus 409 ~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~ 485 (1060)
T PLN03218 409 HAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 34455667888999999999988754 4 5778889999999999999999999999876532 6677777777777 7
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
|+++.|..+|..+...... ....+|..+...|.+.|++++|+.+|..+...+
T Consensus 486 G~vd~A~~vf~eM~~~Gv~----PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G------------------------ 537 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVE----ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------------------------ 537 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------------------------
Confidence 8999999999998764322 137899999999999999999999999987632
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHcCCHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK----YQDYVDAYLRLAAIAKARNNLQLS 250 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A 250 (760)
..| +..+|..+...|.+.|+++.|..+|..+... .| +..+|..+..+|.+.|++++|
T Consensus 538 -----------------v~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 538 -----------------VKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred -----------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHH
Confidence 344 4568889999999999999999999999763 34 467888999999999999999
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcH
Q 004339 251 IELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 329 (760)
Q Consensus 251 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~ 329 (760)
..+|..+.... +.++..|..+...|.+.|++++|+.+|..+....-..+..+|..+... |... |++
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a-~~k~------------G~~ 665 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV-AGHA------------GDL 665 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhC------------CCH
Confidence 99999999876 556789999999999999999999999999987655578888888888 8888 999
Q ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 330 EKAKELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 330 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
+.|..+|..+.+.. +.+..+++.+...|.+.|++++|..+|..+..... . .+...|..+...|.+.|++++|+.+
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~---~-PdvvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL---R-PTVSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---C-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999998864 45788999999999999999999999999876432 1 3578899999999999999999999
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChhHHhhHHHHHHHHHHh-HHhhhhcCHH--H
Q 004339 409 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA--PSNYTLRFDAGVAMQKFSAS-TLQKTRRTAD--E 483 (760)
Q Consensus 409 ~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~-~l~~~~~~l~--~ 483 (760)
|..+... ...++..+|..+..+|.+.|+++.|..+|..+++.. |+......-++.|...+... .+........ .
T Consensus 742 f~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~ 820 (1060)
T PLN03218 742 LSEMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGR 820 (1060)
T ss_pred HHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 9998875 356678888888899999999999999999998864 33222222233333222111 0100000000 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC
Q 004339 484 VRSTVAELENAVRVFSHLSAASNL 507 (760)
Q Consensus 484 ~~~a~~~l~~A~~~~~~l~~~~~~ 507 (760)
..........|+.+|..+...+-.
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred cccccchHHHHHHHHHHHHHCCCC
Confidence 111123446799999999887743
No 43
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.7e-20 Score=181.67 Aligned_cols=391 Identities=13% Similarity=0.081 Sum_probs=326.0
Q ss_pred hhhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 004339 3 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI----- 77 (760)
Q Consensus 3 a~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 77 (760)
|+.+-...|.+....+..+.+|...++-+.|+..+..+.... ..+.....++..+...++-.++.-.|...+..
T Consensus 86 s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL 164 (564)
T KOG1174|consen 86 AIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMAL 164 (564)
T ss_pred cccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHH
Confidence 444555667778888999999999999999998887764322 34666677777777766655555555444332
Q ss_pred --------------------------CCCcHHHHHH---HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004339 78 --------------------------DPRDAQAFID---LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG 127 (760)
Q Consensus 78 --------------------------~p~~~~~~~~---la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 127 (760)
.|..++.|.. ++.++. ..-+..+..++-.-.+..|.+ ..++..+|
T Consensus 165 ~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N-----vhLl~~la 239 (564)
T KOG1174|consen 165 QVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN-----EHLMMALG 239 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc-----HHHHHHHh
Confidence 2333333322 334443 234556666666666777776 89999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHH
Q 004339 128 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 207 (760)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~ 207 (760)
.+++..|++.+|+..|+++.. .+|......-.+|.++
T Consensus 240 k~~~~~Gdn~~a~~~Fe~~~~-------------------------------------------~dpy~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 240 KCLYYNGDYFQAEDIFSSTLC-------------------------------------------ANPDNVEAMDLYAVLL 276 (564)
T ss_pred hhhhhhcCchHHHHHHHHHhh-------------------------------------------CChhhhhhHHHHHHHH
Confidence 999999999999999999987 6778888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHH
Q 004339 208 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 287 (760)
Q Consensus 208 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 287 (760)
...|+++.-..+...++........-|+--+...+...++..|+.+..+++..+|.+..++...|.++...++..+|+-.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence 99999999999999888888778888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HcCChHH
Q 004339 288 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG-VVLA-EKGQFDV 365 (760)
Q Consensus 288 ~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~g~~~~ 365 (760)
|+.+..+.|. ....|-.|... |+.. |.+.+|.-.-+.++...|.+..++..+| .++. .-.--++
T Consensus 357 FR~Aq~Lap~-rL~~Y~GL~hs-YLA~------------~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 357 FRTAQMLAPY-RLEIYRGLFHS-YLAQ------------KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HHHHHhcchh-hHHHHHHHHHH-HHhh------------chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHH
Confidence 9999999887 88889899998 9999 9999999999999999999999999986 5554 3344578
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 004339 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 445 (760)
Q Consensus 366 A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 445 (760)
|..++.+++.+.| ....+-..+|.++...|.+..++.++++.+..+ .|...+..||.++...+.+.+|+.+|
T Consensus 423 AKkf~ek~L~~~P-----~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~---~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 423 AKKFAEKSLKINP-----IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF---PDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHHhhhccCC-----ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc---cccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999 778889999999999999999999999999954 77889999999999999999999999
Q ss_pred HHHHHhCCCChhHHhhHHH
Q 004339 446 LRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 446 ~~al~~~p~~~~~~~~la~ 464 (760)
..|+.++|++....-.+-.
T Consensus 495 ~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 495 YKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HHHHhcCccchHHHHHHHH
Confidence 9999999998766655433
No 44
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.90 E-value=2.9e-20 Score=214.46 Aligned_cols=434 Identities=12% Similarity=0.004 Sum_probs=317.2
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
+...|..+...+...+++..|..++..++... ..+..++..+..+|.+.|+++.|..+|..... | +...|..+...
T Consensus 122 ~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~ 198 (697)
T PLN03081 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGG 198 (697)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHH
Confidence 45567777788888888888888888877643 22567788888888888888888888887753 3 45566666666
Q ss_pred Hc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhH
Q 004339 92 LI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 170 (760)
Q Consensus 92 ~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 170 (760)
|. .|++++|+..|.+++...... ...++..+...+...|....+..++..++..+..... .....++....
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p----~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~---~~~n~Li~~y~- 270 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDA----EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT---FVSCALIDMYS- 270 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCC----ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc---eeHHHHHHHHH-
Confidence 66 678888888888877543221 2455555555666666666666666555543311100 00000000000
Q ss_pred HHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHcCCHHH
Q 004339 171 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQL 249 (760)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~ 249 (760)
+.+.+..+...+.. ..+.+..+|..+...|...|++++|+.+|..+.... ..+..++..+..++...|.++.
T Consensus 271 ----k~g~~~~A~~vf~~---m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 271 ----KCGDIEDARCVFDG---MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred ----HCCCHHHHHHHHHh---CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 00011111111110 123466788899999999999999999999987653 3356678889999999999999
Q ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 250 SIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 250 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
|..++..+++.. +.+..++..+...|.+.|+++.|...|..+.. .+..+|..+... |... |+
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~-y~~~------------G~ 406 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG-YGNH------------GR 406 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH-HHHc------------CC
Confidence 999999998875 56677888999999999999999999998764 266788888888 8888 99
Q ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 004339 329 LEKAKELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 407 (760)
Q Consensus 329 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 407 (760)
.++|+.+|+++.... ..+..++..+...+...|.+++|..+|..+.+..+.. .+...|..+..+|.+.|++++|..
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~---p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK---PRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC---CCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999987643 2356678888888999999999999999998754311 235678889999999999999999
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHH
Q 004339 408 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRST 487 (760)
Q Consensus 408 ~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a 487 (760)
+++++ +..++..+|..|..++...|+++.|...+++++.+.|++...+..++.+|...|
T Consensus 484 ~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G----------------- 542 (697)
T PLN03081 484 MIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG----------------- 542 (697)
T ss_pred HHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC-----------------
Confidence 88754 345678889999999999999999999999999999998888877777766655
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 004339 488 VAELENAVRVFSHLSAASNL 507 (760)
Q Consensus 488 ~~~l~~A~~~~~~l~~~~~~ 507 (760)
.+++|.+++..+...+-.
T Consensus 543 --~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 543 --RQAEAAKVVETLKRKGLS 560 (697)
T ss_pred --CHHHHHHHHHHHHHcCCc
Confidence 578888899888877643
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.88 E-value=4.4e-19 Score=169.23 Aligned_cols=334 Identities=13% Similarity=0.146 Sum_probs=271.1
Q ss_pred CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhh
Q 004339 78 DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 78 ~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
+|.++.-++.+|.-+. .|++..|+..|-.|+..+|++ ..+++..|.+|..+|+..-|+.-+.+++.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~-----Y~aifrRaT~yLAmGksk~al~Dl~rVle-------- 100 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN-----YQAIFRRATVYLAMGKSKAALQDLSRVLE-------- 100 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh-----HHHHHHHHHHHhhhcCCccchhhHHHHHh--------
Confidence 5667778889999777 889999999999999999997 89999999999999999999999999998
Q ss_pred cccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHH
Q 004339 157 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDA 233 (760)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~ 233 (760)
..|+...+....|.++.++|.++.|..-|..++..+|++ ..+
T Consensus 101 -----------------------------------lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 101 -----------------------------------LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred -----------------------------------cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 677888999999999999999999999999999998843 233
Q ss_pred HHHH------------HHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChH
Q 004339 234 YLRL------------AAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 301 (760)
Q Consensus 234 ~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (760)
+..+ ...+...|++..|+.++..++++.|-+..++...+.+|...|+...|+.-++.+-++... +..
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe 224 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTE 224 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chH
Confidence 3222 233456799999999999999999999999999999999999999999999999988776 888
Q ss_pred HHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Q 004339 302 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 381 (760)
Q Consensus 302 ~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 381 (760)
.++.++.+ ++.. |+...++...+.+++++|++-..+- .|.++..+..
T Consensus 225 ~~ykis~L-~Y~v------------gd~~~sL~~iRECLKldpdHK~Cf~-----------------~YKklkKv~K--- 271 (504)
T KOG0624|consen 225 GHYKISQL-LYTV------------GDAENSLKEIRECLKLDPDHKLCFP-----------------FYKKLKKVVK--- 271 (504)
T ss_pred HHHHHHHH-HHhh------------hhHHHHHHHHHHHHccCcchhhHHH-----------------HHHHHHHHHH---
Confidence 99999999 9998 9999999999999999998665432 2222222211
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 382 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 382 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
.+.-+.-.+..+.|.+++...++++.. .|.. ..++..+..|+..-|++.+|+..+..+|.++|++..
T Consensus 272 -------~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 272 -------SLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred -------HHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 112234456678899999999999995 4443 445567888999999999999999999999999999
Q ss_pred HHhhHHHHHHHH-----HHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHh
Q 004339 458 LRFDAGVAMQKF-----SASTLQKTRRTADEVRSTVAELENAVRVFSHLS 502 (760)
Q Consensus 458 ~~~~la~~~~~~-----~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~ 502 (760)
++...|.+|-.- +...++++...-..-..+...++.|.++-.+..
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 999988876321 112344444444455566777788877766544
No 46
>PLN03077 Protein ECB2; Provisional
Probab=99.87 E-value=6.4e-19 Score=208.36 Aligned_cols=436 Identities=13% Similarity=0.076 Sum_probs=241.5
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
..|+ ...|..+...+...|+++.|..++..+++.. +.+..++..+...|.+.|+++.|..+|+.... .+...|..
T Consensus 284 ~~Pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~ 359 (857)
T PLN03077 284 VDPD-LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTA 359 (857)
T ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHH
Confidence 3444 3345566666666777777777777666543 23456666777777777777777777766532 24445666
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
+...|. .|++++|+..|..+...... .....+..+-..+...|+++.|..++..++..+...... ....++.
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~----Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~---~~n~Li~ 432 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVS----PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV---VANALIE 432 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC----CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH---HHHHHHH
Confidence 666666 56777777777765443211 113455555556666677777777776666533100000 0000000
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 246 (760)
... +.+.+..+...+.. ....+..+|..+...|...|++.+|+.+|.+++...+.+..++..+...+...|.
T Consensus 433 ~y~-----k~g~~~~A~~vf~~---m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 433 MYS-----KCKCIDKALEVFHN---IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHH-----HcCCHHHHHHHHHh---CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence 000 00000000000000 0011233455555555555666666666655554333344444555555555555
Q ss_pred HHHHHHHHHHHHHHc-CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHH
Q 004339 247 LQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 325 (760)
Q Consensus 247 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~ 325 (760)
.+.+..++..++... ..+..++..+...|.+.|+++.|...|... + .+..+|..+... |...
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~-~d~~s~n~lI~~-~~~~----------- 567 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E-KDVVSWNILLTG-YVAH----------- 567 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----C-CChhhHHHHHHH-HHHc-----------
Confidence 555555555555432 223334445556666667777776666654 1 255666666666 6666
Q ss_pred hhcHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 004339 326 ATHLEKAKELYTRVIVQ--HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 403 (760)
Q Consensus 326 ~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 403 (760)
|+.++|+.+|+++... .| +..++..+...+.+.|.+++|..+|..+....+-. .+...|..+..+|.+.|+++
T Consensus 568 -G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~---P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 568 -GKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT---PNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred -CCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHhCCCHH
Confidence 7777777777766553 23 33445555556666777777777777666443210 13456666777777777777
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 483 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~ 483 (760)
+|..+++.. +..+++.+|..|-.++...|+.+.|....++++++.|++...+..++.+|...
T Consensus 643 eA~~~~~~m----~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~-------------- 704 (857)
T PLN03077 643 EAYNFINKM----PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA-------------- 704 (857)
T ss_pred HHHHHHHHC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC--------------
Confidence 777666654 23345666666666666666777776667777777777766666666665444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC
Q 004339 484 VRSTVAELENAVRVFSHLSAASNLH 508 (760)
Q Consensus 484 ~~~a~~~l~~A~~~~~~l~~~~~~~ 508 (760)
+.+++|.++...+...+-..
T Consensus 705 -----g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 705 -----GKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred -----CChHHHHHHHHHHHHcCCCC
Confidence 45778888888887765443
No 47
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.87 E-value=9.7e-19 Score=201.83 Aligned_cols=431 Identities=14% Similarity=0.064 Sum_probs=331.7
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYP--DNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPRDAQAFIDLGEL 91 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 91 (760)
.|..+...+...|++.+|+.+|..+....| -+..++..+..++...+++..|..++..++.. .| +...+..+..+
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 577778888999999999999999876543 36788899999999999999999999988764 45 56778888888
Q ss_pred Hc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhH
Q 004339 92 LI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 170 (760)
Q Consensus 92 ~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 170 (760)
|. .|+++.|...|..... | ...+|+.+...|...|++++|+.+|.+++..++...... ....+.....
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t---~~~ll~a~~~ 236 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT---FVVMLRASAG 236 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh---HHHHHHHHhc
Confidence 88 7899999999998753 2 267899999999999999999999999987653211000 0000000000
Q ss_pred HHHH-HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Q 004339 171 MLQF-KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 249 (760)
Q Consensus 171 ~~~~-~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 249 (760)
.-.. ....+....... ...| +..++..+...|.+.|++++|..+|..+. +.+..+|..+...|...|++++
T Consensus 237 ~~~~~~~~~l~~~~~~~----g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 237 LGSARAGQQLHCCVLKT----GVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred CCcHHHHHHHHHHHHHh----CCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHH
Confidence 0000 000111111111 1222 45677888999999999999999998764 4577889999999999999999
Q ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 250 SIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 250 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
|+.+|.++.... .-+...+..+...+...|.++.|...+..+++.....+..++..+... |... |+
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~-y~k~------------G~ 375 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL-YSKW------------GR 375 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH-HHHC------------CC
Confidence 999999987653 335668889999999999999999999999988755588888899999 9998 99
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 329 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 329 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
++.|..+|..+.. .+..+|+.+...|...|+.++|+.+|.++..... . -+..++..+...+...|.+++|..+
T Consensus 376 ~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~---~-Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 376 MEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV---A-PNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred HHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C-CCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999998754 3677899999999999999999999999987542 1 3477788899999999999999999
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHH
Q 004339 409 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTV 488 (760)
Q Consensus 409 ~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~ 488 (760)
|+.+.......++...|..+..+|.+.|++++|...++++ ...| +..+|..|...+...+
T Consensus 449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g------------------ 508 (697)
T PLN03081 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHK------------------ 508 (697)
T ss_pred HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcC------------------
Confidence 9999886566777889999999999999999999998764 2333 3344555554444333
Q ss_pred HHHHHHHHHHHHHhhcCCC
Q 004339 489 AELENAVRVFSHLSAASNL 507 (760)
Q Consensus 489 ~~l~~A~~~~~~l~~~~~~ 507 (760)
.++.|..+++.+....+.
T Consensus 509 -~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 509 -NLELGRLAAEKLYGMGPE 526 (697)
T ss_pred -CcHHHHHHHHHHhCCCCC
Confidence 456666777777665543
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=6.7e-20 Score=173.69 Aligned_cols=249 Identities=16% Similarity=0.128 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 277 (760)
.....+|.||+++|.+.+|.+.++..+...| .++.+..|+.+|.+..++..|+..|...+..+|.+...+...+.++..
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3445699999999999999999999999776 688999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 278 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
+++++.|.++|+.+++..|. +..+...+|.- |+-. ++.+-|+.+|++++.+.-.++..++++|.|+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~-yfY~------------~~PE~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVG-YFYD------------NNPEMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeec-cccC------------CChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 99999999999999999887 66776667766 7777 9999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 358 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
+..++++-++..|.+++....... .-.++|+++|.+....|++.-|...|+-++.. ++++.+++.+||.+-.+.|+
T Consensus 369 ~yaqQ~D~~L~sf~RAlstat~~~--~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 369 LYAQQIDLVLPSFQRALSTATQPG--QAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HhhcchhhhHHHHHHHHhhccCcc--hhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCc
Confidence 999999999999999998763111 45889999999999999999999999999984 78889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 438 WQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
...|..+|..|-.+.|.-....+|++.+
T Consensus 445 i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 445 ILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred hHHHHHHHHHhhhhCccccccccceeEE
Confidence 9999999999999999999888888765
No 49
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.87 E-value=2.7e-19 Score=192.10 Aligned_cols=383 Identities=15% Similarity=0.107 Sum_probs=260.7
Q ss_pred hhhhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 004339 2 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR- 80 (760)
Q Consensus 2 aa~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 80 (760)
+-+++++.+|..+.+|..+|.+|...-+...|..+|.++..++|.++.++-..+..|....+++.|..+.-.+-+..|.
T Consensus 480 ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~ 559 (1238)
T KOG1127|consen 480 ALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF 559 (1238)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999997777777664
Q ss_pred -cHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcc
Q 004339 81 -DAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 158 (760)
Q Consensus 81 -~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 158 (760)
....|..+|..|. .++...|+..|+.++..+|++ ..+|..+|.+|...|.|..|++.|.++..
T Consensus 560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-----~n~W~gLGeAY~~sGry~~AlKvF~kAs~---------- 624 (1238)
T KOG1127|consen 560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-----YNLWLGLGEAYPESGRYSHALKVFTKASL---------- 624 (1238)
T ss_pred HHHhhhhhccccccCccchhhHHHHHHHHhcCCchh-----HHHHHHHHHHHHhcCceehHHHhhhhhHh----------
Confidence 3455677888877 679999999999999999997 89999999999999999999999999987
Q ss_pred cchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-------H
Q 004339 159 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-------V 231 (760)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~ 231 (760)
.+|.+.-+.|..+.+....|.|.+|+..+..++...... .
T Consensus 625 ---------------------------------LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLa 671 (1238)
T KOG1127|consen 625 ---------------------------------LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLA 671 (1238)
T ss_pred ---------------------------------cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 556666777777777777888888887777777654433 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------CCChHHHHHHHHHHhh-----------------------cCC
Q 004339 232 DAYLRLAAIAKARNNLQLSIELVNEALKVN--------GKYPNALSMLGDLELK-----------------------NDD 280 (760)
Q Consensus 232 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~-----------------------~g~ 280 (760)
.++++++..+...|-...|..++++.+... ..+...|..+|....- .+.
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 344444444444555555555555444321 1222222222222110 000
Q ss_pred H------HHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004339 281 W------VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 354 (760)
Q Consensus 281 ~------~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 354 (760)
. --+.+++-..+.... .++.|+++|.- |++......... .+...|+.++.+++++..++...|+.||
T Consensus 752 l~~~d~l~Lg~~c~~~hlsl~~--~~~~WyNLGin-ylr~f~~l~et~----~~~~~Ai~c~KkaV~L~ann~~~WnaLG 824 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLSLAI--HMYPWYNLGIN-YLRYFLLLGETM----KDACTAIRCCKKAVSLCANNEGLWNALG 824 (1238)
T ss_pred CcchhHHHHHHHHhhHHHHHhh--ccchHHHHhHH-HHHHHHHcCCcc----hhHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 0 122233322222221 35667777776 555332211110 2335677777777777777777777777
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 004339 355 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434 (760)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 434 (760)
.+ ...|++.-|..+|-+.+...| .....|.|+|.++....+++.|...|..+..+ .|.+...|...+.+...
T Consensus 825 Vl-sg~gnva~aQHCfIks~~sep-----~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~ea 896 (1238)
T KOG1127|consen 825 VL-SGIGNVACAQHCFIKSRFSEP-----TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEA 896 (1238)
T ss_pred Hh-hccchhhhhhhhhhhhhhccc-----cchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHH
Confidence 76 555677777777777776666 55666677777766666666666666666664 45555555555555555
Q ss_pred hccHHHHHHHHHH
Q 004339 435 AEQWQDCKKSLLR 447 (760)
Q Consensus 435 ~g~~~~A~~~~~~ 447 (760)
.|+.-++...|..
T Consensus 897 vG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 897 VGRIIERLILFAH 909 (1238)
T ss_pred HHHHHHHHHHHHh
Confidence 5555554444444
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=1.8e-21 Score=198.77 Aligned_cols=265 Identities=21% Similarity=0.176 Sum_probs=123.5
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEI--YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
..+.+|.+++..|++++|+.++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.++.
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~ 89 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3457799999999999999999766544 48899999999999999999999999999999999999999988888866
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.+++.+|+.++..+.+..+. +..+..++.++...++++.+...+..+....
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----------------------- 140 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGD------PRYLLSALQLYYRLGDYDEAEELLEKLEELP----------------------- 140 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------------------
T ss_pred cccccccccccccccccccc------cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-----------------------
Confidence 88999999999998876654 5677788888999999999999999976421
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 253 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 253 (760)
..+.++.+++.+|.++...|++++|+.+|++++..+|++..++..++.++...|++.++...
T Consensus 141 ------------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 141 ------------------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp ---------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 23467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHH
Q 004339 254 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 333 (760)
Q Consensus 254 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 333 (760)
+.......|.++.++..+|.++...|++++|+.+|.+++...|. ++..+..+|.+ +... |+.+.|.
T Consensus 203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~-l~~~------------g~~~~A~ 268 (280)
T PF13429_consen 203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADA-LEQA------------GRKDEAL 268 (280)
T ss_dssp HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHH-HT---------------------
T ss_pred HHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc-ccccccccccc-cccc------------ccccccc
Confidence 99999888999999999999999999999999999999999888 99999999999 9988 9999999
Q ss_pred HHHHHHHh
Q 004339 334 ELYTRVIV 341 (760)
Q Consensus 334 ~~~~~al~ 341 (760)
.++.+++.
T Consensus 269 ~~~~~~~~ 276 (280)
T PF13429_consen 269 RLRRQALR 276 (280)
T ss_dssp --------
T ss_pred cccccccc
Confidence 99998765
No 51
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.86 E-value=1.5e-18 Score=182.95 Aligned_cols=381 Identities=17% Similarity=0.118 Sum_probs=316.3
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcC-----CCcHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PDNCETLKALGH-IYVQLGQIEKAQELLRKAAKID-----PRDAQA 84 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~-----p~~~~~ 84 (760)
....|+.++.+|...|.-..|+.+++..+... |.++..+...+. |+...+.+.+++.+..+++... .-.+.+
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 34579999999999999999999999999988 777777666665 5556799999999999999842 224667
Q ss_pred HHHHHHHHcc-----C-------CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccch
Q 004339 85 FIDLGELLIS-----S-------DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 152 (760)
Q Consensus 85 ~~~la~~~~~-----~-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 152 (760)
+..+|.+|.. . ...+++..+++++++.|.+ +.+.+.++.-|..+++...|+.+..+++..+
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d-----p~~if~lalq~A~~R~l~sAl~~~~eaL~l~-- 508 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD-----PLVIFYLALQYAEQRQLTSALDYAREALALN-- 508 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHhHHHHHHHHHHHHHhc--
Confidence 7888887752 1 2568899999999999997 7999999999999999999999999999842
Q ss_pred hhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH
Q 004339 153 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 232 (760)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 232 (760)
...++.+|..++.++...+++..|+.+...++...|.+..
T Consensus 509 ----------------------------------------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 509 ----------------------------------------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred ----------------------------------------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 3467889999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHH---------HHHHHHHHhhcCCHHHHHHHHHHhhhc---------
Q 004339 233 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA---------LSMLGDLELKNDDWVKAKETFRAASDA--------- 294 (760)
Q Consensus 233 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~--------- 294 (760)
.......+-...++.++|+..+...+.+....+.+ ....+.+.....+..+|+..+..+...
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 88888888888999999999999888775533322 223334444455666666555554331
Q ss_pred ----------CCCCC------hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004339 295 ----------TDGKD------SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358 (760)
Q Consensus 295 ----------~~~~~------~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (760)
.|.++ ...|...+.. +... ++.+.|..++.++-.++|..+..|+..|.++.
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~-~~~~------------~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADL-FLLS------------GNDDEARSCLLEASKIDPLSASVYYLRGLLLE 695 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHH-HHhc------------CCchHHHHHHHHHHhcchhhHHHHHHhhHHHH
Confidence 11111 1233445555 5555 88999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhhcCCCcHHHHHHHHHHHHHhc
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK--MYQNCLRKFYYNTDAQILLYLARTHYEAE 436 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~la~~~~~~g 436 (760)
..|.+.+|...|..++.++| +++.+...+|.++...|+..-|.. ++..++.. +|.++++|+++|.++.+.|
T Consensus 696 ~~~~~~EA~~af~~Al~ldP-----~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDP-----DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcc
Confidence 99999999999999999999 889999999999999998888877 99999996 8999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCChhHHh
Q 004339 437 QWQDCKKSLLRAIHLAPSNYTLRF 460 (760)
Q Consensus 437 ~~~~A~~~~~~al~~~p~~~~~~~ 460 (760)
+...|..+|..|+++.+.+|..-|
T Consensus 769 d~~~Aaecf~aa~qLe~S~PV~pF 792 (799)
T KOG4162|consen 769 DSKQAAECFQAALQLEESNPVLPF 792 (799)
T ss_pred chHHHHHHHHHHHhhccCCCcccc
Confidence 999999999999999999987654
No 52
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.85 E-value=5.1e-17 Score=168.19 Aligned_cols=466 Identities=15% Similarity=0.050 Sum_probs=315.4
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
.+...|.++..+-..|..+...|+-++|..+...++..++.+..+|..+|.++...++|++|+.+|+.|+.+.|+|...|
T Consensus 33 iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qil 112 (700)
T KOG1156|consen 33 ILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQIL 112 (700)
T ss_pred HHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc---hhhhhcccch
Q 004339 86 IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI---WLTLLDSKTK 161 (760)
Q Consensus 86 ~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~ 161 (760)
..++.+.. .+++........+.+++.|.. -..|...+..++-.|++..|...++...+... ......
T Consensus 113 rDlslLQ~QmRd~~~~~~tr~~LLql~~~~-----ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e---- 183 (700)
T KOG1156|consen 113 RDLSLLQIQMRDYEGYLETRNQLLQLRPSQ-----RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE---- 183 (700)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH----
Confidence 99999988 679999999999999999997 78999999999999999999999988876541 100000
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 241 (760)
....-.....+....+..-.++......-..--+........|.++..++++++|...|...+..+|++...+..+-.++
T Consensus 184 ~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 184 HSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL 263 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence 00000011111111111111222111111111223345566789999999999999999999999999999988888877
Q ss_pred HHcCCHHHHH-HHHHHHHHHcCCChH--------------------------------HHHHHHHHHhhcCCHHHHHHHH
Q 004339 242 KARNNLQLSI-ELVNEALKVNGKYPN--------------------------------ALSMLGDLELKNDDWVKAKETF 288 (760)
Q Consensus 242 ~~~g~~~~A~-~~~~~al~~~p~~~~--------------------------------~~~~la~~~~~~g~~~~A~~~~ 288 (760)
....+.-+++ ..|...-+..|.... +...+-.+|- +... ..++
T Consensus 264 gk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k-~~~l 339 (700)
T KOG1156|consen 264 GKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEK-VAFL 339 (700)
T ss_pred HHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhH-hHHH
Confidence 5333333344 444444333332111 0001111111 1111 1122
Q ss_pred HHhh-------hcC---C--------CCChH--HHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 289 RAAS-------DAT---D--------GKDSY--ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 289 ~~al-------~~~---~--------~~~~~--~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
++.+ .-. + .+.+. .++.++.- |... |+++.|..+.+.++...|.-+.
T Consensus 340 e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh-~D~~------------g~~~~A~~yId~AIdHTPTliE 406 (700)
T KOG1156|consen 340 EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH-YDKL------------GDYEVALEYIDLAIDHTPTLIE 406 (700)
T ss_pred HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH-HHHc------------ccHHHHHHHHHHHhccCchHHH
Confidence 2221 111 0 00122 22333333 5555 9999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc-CCCc------
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY-YNTD------ 421 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~------ 421 (760)
.+...|.++...|.++.|..++..+.+++- .+..+...-|.-..+.++.++|...+.+.-..-. .-++
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~-----aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqc 481 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDT-----ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQC 481 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhh
Confidence 999999999999999999999999999874 3333334578888899999999988776544210 0011
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhH-HHHHHHHHH------hHHhhhhcCHHHHHHHHHHHHHH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA-GVAMQKFSA------STLQKTRRTADEVRSTVAELENA 494 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~~~------~~l~~~~~~l~~~~~a~~~l~~A 494 (760)
......-|.+|.++|++-.|+.-|..+-.+...-..-.|.. ..|+.+..- ..+.+..++.+.+..|. ..|
T Consensus 482 mWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa---~~A 558 (700)
T KOG1156|consen 482 MWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAA---KGA 558 (700)
T ss_pred HHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHH---HHH
Confidence 33344568899999999999888877666544332222222 223222211 11344444444444443 567
Q ss_pred HHHHHHHhhcC
Q 004339 495 VRVFSHLSAAS 505 (760)
Q Consensus 495 ~~~~~~l~~~~ 505 (760)
+++|-.|...+
T Consensus 559 i~iYl~l~d~p 569 (700)
T KOG1156|consen 559 IEIYLRLHDSP 569 (700)
T ss_pred HHHHHHHhcCc
Confidence 78888887665
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.85 E-value=7.2e-21 Score=194.42 Aligned_cols=269 Identities=21% Similarity=0.200 Sum_probs=115.0
Q ss_pred HHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-c-CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC
Q 004339 42 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-I-DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV 118 (760)
Q Consensus 42 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~ 118 (760)
+..|. . ..+.+|.+++..|++++|+.++.+.+. . .|+++..|..+|.+.. .++++.|+..|++++...+..
T Consensus 4 ~~~~~-~-~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~---- 77 (280)
T PF13429_consen 4 EFGPS-E-EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN---- 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence 34565 2 334779999999999999999976554 4 4889999999999888 779999999999999988775
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
+..+..++.+ ...+++.+|+.++..++.. . .++.
T Consensus 78 -~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~-------------------------------------------~-~~~~ 111 (280)
T PF13429_consen 78 -PQDYERLIQL-LQDGDPEEALKLAEKAYER-------------------------------------------D-GDPR 111 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cccccccccc-ccccccccccccccccccc-------------------------------------------c-cccc
Confidence 6677777777 7899999999999887652 1 2455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKY--QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 276 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 276 (760)
.+..++.++...++++++...+..+.... +.++..|..+|.++...|++++|+.+|++++..+|+++.++..++.++.
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI 191 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 66677788899999999999999977654 6788899999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004339 277 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 356 (760)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 356 (760)
..|++.++...+.......|. ++..+..+|.+ |... |++++|+.+|++++..+|+++.++..+|.+
T Consensus 192 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~la~~-~~~l------------g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAAPD-DPDLWDALAAA-YLQL------------GRYEEALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH-HT-SCCHCHHHHHH-HHHH------------T-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHCcC-HHHHHHHHHHH-hccc------------cccccccccccccccccccccccccccccc
Confidence 999999988888877776655 56667778888 8888 888888888888888888888888888888
Q ss_pred HHHcCChHHHHHHHHHHHHH
Q 004339 357 LAEKGQFDVSKDLFTQVQEA 376 (760)
Q Consensus 357 ~~~~g~~~~A~~~~~~al~~ 376 (760)
+...|++++|..++.+++..
T Consensus 258 l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 258 LEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HT------------------
T ss_pred cccccccccccccccccccc
Confidence 88888888888888877653
No 54
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-18 Score=169.70 Aligned_cols=309 Identities=13% Similarity=0.066 Sum_probs=218.1
Q ss_pred hcCCCCCchhh---hhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 7 INKPHEFIFPY---YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 7 i~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
+..+|.+++.+ +..|+++....-+..+..++-.-....|+|...+..+|.+++..|++.+|+..|+++.-++|....
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~ 267 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE 267 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh
Confidence 44555554433 345666666666667777777777788999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchh
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 162 (760)
..-.+|.++. .|+++.--......+.+.... ..-|+--+...+...++..|+.+-.+++.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t-----a~~wfV~~~~l~~~K~~~rAL~~~eK~I~-------------- 328 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT-----ASHWFVHAQLLYDEKKFERALNFVEKCID-------------- 328 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc-----hhhhhhhhhhhhhhhhHHHHHHHHHHHhc--------------
Confidence 8888888877 678877776666666665443 56677777888888888888888888877
Q ss_pred hhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 004339 163 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK 242 (760)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 242 (760)
.+|.+..++...|.++...++..+|+-.|+.+..+.|....+|-.|..+|+
T Consensus 329 -----------------------------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 329 -----------------------------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred -----------------------------cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 667778888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHHcCCChHHHHHHH-HHHhh-cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhc
Q 004339 243 ARNNLQLSIELVNEALKVNGKYPNALSMLG-DLELK-NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 320 (760)
Q Consensus 243 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~ 320 (760)
..|.+.+|....+.++...|.+..++..+| .+++. -.--++|..++++++.+.|. ...+.+.++.+ +...
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL-~~~E------ 451 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAEL-CQVE------ 451 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHH-HHhh------
Confidence 888888888888888888888877777775 33322 12234555555555555554 44444444444 4443
Q ss_pred CchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 321 APKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 321 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
|.+..++.++++.+...|+ ...+..||.++...+.+.+|+.+|..++.++|
T Consensus 452 ------g~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 452 ------GPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred ------CccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 5555555555555555543 23445555555555555555555555555555
No 55
>PLN03077 Protein ECB2; Provisional
Probab=99.85 E-value=7.8e-18 Score=199.15 Aligned_cols=411 Identities=13% Similarity=0.065 Sum_probs=284.2
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGEL 91 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 91 (760)
+..|..+...|.+.|++.+|+.+|.++.... ..+..++..+...+...|+.+.|..++..++... +.+...+..+..+
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 3344555555555555555555555554432 1123344444444555555555555555554432 2256678888888
Q ss_pred Hc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhH
Q 004339 92 LI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 170 (760)
Q Consensus 92 ~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 170 (760)
|. .|+++.|...|..... | ...+|+.+...|.+.|++++|+.+|..+...+..+... .....+.....
T Consensus 333 y~k~g~~~~A~~vf~~m~~--~------d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~---t~~~ll~a~~~ 401 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMET--K------DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI---TIASVLSACAC 401 (857)
T ss_pred HHhcCCHHHHHHHHhhCCC--C------CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce---eHHHHHHHHhc
Confidence 88 7899999999998642 2 25789999999999999999999999987654211100 00000000000
Q ss_pred HHH-HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Q 004339 171 MLQ-FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 249 (760)
Q Consensus 171 ~~~-~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 249 (760)
.-. -....++...... ... .+..++..+...|.+.|+++.|..+|.++.. .+..+|..+...|...|++.+
T Consensus 402 ~g~~~~a~~l~~~~~~~----g~~-~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 402 LGDLDVGVKLHELAERK----GLI-SYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred cchHHHHHHHHHHHHHh----CCC-cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHH
Confidence 000 0001111111111 112 2456777788888889999999988887653 345678888888888899999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcH
Q 004339 250 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 329 (760)
Q Consensus 250 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~ 329 (760)
|+.+|.+++...+.+...+..+...+...|..+.+...+..++...-..+...+..|... |.+. |++
T Consensus 474 A~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~-y~k~------------G~~ 540 (857)
T PLN03077 474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL-YVRC------------GRM 540 (857)
T ss_pred HHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH-HHHc------------CCH
Confidence 999988887655555666677777788888888888888888877655566677777777 8888 999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 330 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 409 (760)
Q Consensus 330 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (760)
+.|...|... +.+..+|+.+...|...|+.++|+.+|.++..... . .+..++..+...+...|.+++|..+|
T Consensus 541 ~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~---~-Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 541 NYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV---N-PDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---C-CCcccHHHHHHHHhhcChHHHHHHHH
Confidence 9999999886 56888999999999999999999999999987532 1 23556777778899999999999999
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 410 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 410 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
+.....+...++...|..+..+|.+.|++++|...+++. .+.|+ ..+|..|-..+
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac 667 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNAC 667 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH
Confidence 999976667788899999999999999999999999885 34554 44454444433
No 56
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.84 E-value=2.3e-17 Score=177.52 Aligned_cols=390 Identities=13% Similarity=0.042 Sum_probs=294.6
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHH
Q 004339 27 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFK 105 (760)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~ 105 (760)
..+...|+..|-++++++|..+.+|..||.+|...-+...|..+|.+|..++|.+..++-..+..|. ..+++.|.....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 4458889999999999999999999999999999989999999999999999999999999999998 568999988866
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhc
Q 004339 106 TARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 185 (760)
Q Consensus 106 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (760)
.+-+..|... ....|..+|..|...+++..|+..|+.++.
T Consensus 551 ~~~qka~a~~---~k~nW~~rG~yyLea~n~h~aV~~fQsALR------------------------------------- 590 (1238)
T KOG1127|consen 551 RAAQKAPAFA---CKENWVQRGPYYLEAHNLHGAVCEFQSALR------------------------------------- 590 (1238)
T ss_pred HHhhhchHHH---HHhhhhhccccccCccchhhHHHHHHHHhc-------------------------------------
Confidence 6666555431 235677799999999999999999999987
Q ss_pred cCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh
Q 004339 186 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 265 (760)
Q Consensus 186 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 265 (760)
.+|.+...|..+|.+|...|.+..|++.|.++..++|.+..+.+..+.+...+|.|.+|+..+...+.......
T Consensus 591 ------~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~ 664 (1238)
T KOG1127|consen 591 ------TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER 664 (1238)
T ss_pred ------CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999887665443
Q ss_pred H-------HHHHHHHHHhhcCCHHHHHHHHHHhhhc-------CCCCChHHHHHHHHHH------------------HHH
Q 004339 266 N-------ALSMLGDLELKNDDWVKAKETFRAASDA-------TDGKDSYATLSLGNWN------------------YFA 313 (760)
Q Consensus 266 ~-------~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~lg~~~------------------y~~ 313 (760)
. .+...+..+...|=+..|..++++.+.. ....+...|..+|..+ ++.
T Consensus 665 ~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~ 744 (1238)
T KOG1127|consen 665 TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSK 744 (1238)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHH
Confidence 3 4444444444455555555555554441 1111222222222210 111
Q ss_pred ---HHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-H-HcC-ChHHHHHHHHHHHHHhcCCCCCCchH
Q 004339 314 ---ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL-A-EKG-QFDVSKDLFTQVQEAASGSVFVQMPD 387 (760)
Q Consensus 314 ---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~-~~g-~~~~A~~~~~~al~~~p~~~~~~~~~ 387 (760)
.+...+.+..+..| +.--...+..+....|-.-...+.++.++ . ..+ +...|+.++.+++.+.. ++..
T Consensus 745 q~e~~~~l~~~d~l~Lg-~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-----nn~~ 818 (1238)
T KOG1127|consen 745 QLEKTGALKKNDLLFLG-YECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-----NNEG 818 (1238)
T ss_pred HHHhcccCcchhHHHHH-HHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-----ccHH
Confidence 00111222111101 12222333333333333222333333222 2 222 33579999999999997 7889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHH
Q 004339 388 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 467 (760)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 467 (760)
.|..||.+ ...|++.-|...|-+.+.. .|.....|.++|.++....+++.|...|.++..++|.+...|...+.+..
T Consensus 819 ~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~e 895 (1238)
T KOG1127|consen 819 LWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPE 895 (1238)
T ss_pred HHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHH
Confidence 99999988 6668999999999999885 67889999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 004339 468 KFSA 471 (760)
Q Consensus 468 ~~~~ 471 (760)
.+|.
T Consensus 896 avG~ 899 (1238)
T KOG1127|consen 896 AVGR 899 (1238)
T ss_pred HHHH
Confidence 7774
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=9.1e-20 Score=172.81 Aligned_cols=272 Identities=18% Similarity=0.178 Sum_probs=198.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC---CC-------cHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004339 57 IYVQLGQIEKAQELLRKAAKID---PR-------DAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125 (760)
Q Consensus 57 ~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 125 (760)
+++..++...|-......+.+. |. +...-..+|.||. .|-+..|...++.+++..|. ++.+..
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~------~dTfll 261 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH------PDTFLL 261 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc------hhHHHH
Confidence 4555566666665555544432 11 1222345777777 67777777777777776665 677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~ 205 (760)
|+.+|.+..++..|+..|...+. ..|.++..+..+++
T Consensus 262 LskvY~ridQP~~AL~~~~~gld-------------------------------------------~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 262 LSKVYQRIDQPERALLVIGEGLD-------------------------------------------SFPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHhccHHHHHHHHhhhhh-------------------------------------------cCCchhhhhhhhHH
Confidence 88888888888888888777766 56677777777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
++..+++++.|.++|+.+++.+|.++++...+|..|+-.++++-|+.+|.+++...-.+++.+.++|.+.+..++++-++
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 88888888888888888888888887777777777777788888888888888887778888888888888888888888
Q ss_pred HHHHHhhhcC--CCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 004339 286 ETFRAASDAT--DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 363 (760)
Q Consensus 286 ~~~~~al~~~--~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 363 (760)
..|.+++... |.....+|+++|.+ .... |++..|..+|+-++..+|++..++++||.+-.+.|+.
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~v-aV~i------------GD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFV-AVTI------------GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhcccee-EEec------------cchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 8888777653 34456677777777 6665 7888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 004339 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 364 ~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~ 395 (760)
..|..++..+-...| ...+..++++.+
T Consensus 446 ~~Arsll~~A~s~~P-----~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMP-----DMAEVTTNLQFM 472 (478)
T ss_pred HHHHHHHHHhhhhCc-----cccccccceeEE
Confidence 888888888777777 555555555543
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=2.1e-18 Score=192.29 Aligned_cols=228 Identities=20% Similarity=0.143 Sum_probs=192.7
Q ss_pred hhhHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCcHHH
Q 004339 17 YYGLGQVQLKL---GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL---------GQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 17 ~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
++..|..++.. +.+.+|+.+|++++..+|+++.+|..+|.+|... +++.+|+..+++++.++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 45566555443 3578999999999999999999999999887643 34789999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
+..+|.++. .|++++|+..|++++.++|++ +.+++.+|.++...|++++|+..|++++.
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--------------- 400 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPIS-----ADIKYYYGWNLFMAGQLEEALQTINECLK--------------- 400 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------
Confidence 999999887 789999999999999999987 88999999999999999999999999988
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAK 242 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~ 242 (760)
.+|.++.+++.++.+++..|++++|+..+.+++... |+++.++..+|.++.
T Consensus 401 ----------------------------l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~ 452 (553)
T PRK12370 401 ----------------------------LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLS 452 (553)
T ss_pred ----------------------------cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 556666666666777788899999999999998775 778888899999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 243 ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 243 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
..|++++|...+.++....|....++..++.+|...|+ .|...+..++..
T Consensus 453 ~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 453 LKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred hCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 99999999999999888888888888899988888884 777777776654
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=2.2e-17 Score=177.41 Aligned_cols=301 Identities=15% Similarity=0.047 Sum_probs=226.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004339 50 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 128 (760)
Q Consensus 50 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 128 (760)
.....|.+.+..|++..|...+.++....|.....+...|.++. +|+++.|..+|.++.+..|... ..+....+.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~----l~~~~~~a~ 161 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN----ILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc----hHHHHHHHH
Confidence 34556777778899999999999998888887777888888777 7899999999999888777751 345566688
Q ss_pred HHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHH
Q 004339 129 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 208 (760)
Q Consensus 129 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~ 208 (760)
++...|+++.|+..++.++. ..|.++.++..++.++.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~-------------------------------------------~~P~~~~~l~ll~~~~~ 198 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLE-------------------------------------------MAPRHKEVLKLAEEAYI 198 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHH
Confidence 89999999999999988887 56788888999999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHHcC----CChHHHHHHHHHHhhcCC
Q 004339 209 QIHDTVAASVLYRLILFKYQDYVDAYL----RLAAIAKARNNLQLSIELVNEALKVNG----KYPNALSMLGDLELKNDD 280 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~~p~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~ 280 (760)
..|+++.|...+...++..+.....+. ....-+...+..+.+...+..+....| +++.++..++..+...|+
T Consensus 199 ~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~ 278 (409)
T TIGR00540 199 RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDD 278 (409)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 999999999999988877544333221 222222344444555667777777776 588889999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHH
Q 004339 281 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL--YAANGAGVVLA 358 (760)
Q Consensus 281 ~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~ 358 (760)
++.|...+.++++..|++....+..+-.+..... ++...++..++++++.+|+++ ..+..+|+++.
T Consensus 279 ~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~------------~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~ 346 (409)
T TIGR00540 279 HDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP------------EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM 346 (409)
T ss_pred hHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC------------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 9999999999998887643221111111101222 667788888888888888888 78888888888
Q ss_pred HcCChHHHHHHHH--HHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 359 EKGQFDVSKDLFT--QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 359 ~~g~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
..|++.+|..+|+ .++...| + +..+..+|.++..+|+.++|..+|++++..
T Consensus 347 ~~~~~~~A~~~le~a~a~~~~p-----~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 347 KHGEFIEAADAFKNVAACKEQL-----D-ANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HcccHHHHHHHHHHhHHhhcCC-----C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888 5666666 4 444668888888888888888888888764
No 60
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=2.2e-17 Score=177.45 Aligned_cols=301 Identities=13% Similarity=0.064 Sum_probs=247.0
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHc-
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-QAFIDLGELLI- 93 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~- 93 (760)
..+..|...+..|+|..|...+.++.+..|.....+...|.++...|+++.|..+|.++.+..|++. .+....+.++.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3466788889999999999999999999998888899999999999999999999999999999875 46666788877
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.|+++.|+..++.+++..|++ +.++..++.+|...|+++.|+..+...++.++
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~-----~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~---------------------- 218 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRH-----KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL---------------------- 218 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC----------------------
Confidence 789999999999999999997 89999999999999999999999999986321
Q ss_pred HHhHHhhhhhhccCCCccCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHcCCHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFKYQ----DYVDAYLRLAAIAKARNNLQ 248 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~ 248 (760)
.+|... .+.......+...+..+.+...+..+....| +++..+..++..+...|+++
T Consensus 219 ------------------~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 219 ------------------FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred ------------------CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 122221 1122222222344444555667777777776 58899999999999999999
Q ss_pred HHHHHHHHHHHHcCCChHHH--HHHHHHHhhcCCHHHHHHHHHHhhhcCCCCCh--HHHHHHHHHHHHHHHhhhhcCchH
Q 004339 249 LSIELVNEALKVNGKYPNAL--SMLGDLELKNDDWVKAKETFRAASDATDGKDS--YATLSLGNWNYFAALRNEKRAPKL 324 (760)
Q Consensus 249 ~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~lg~~~y~~~~~~~~~~~~~ 324 (760)
+|+..+.++++..|++.... .......+..++...++..++++++..|. ++ ..+..+|.+ ++..
T Consensus 281 ~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l-~~~~---------- 348 (409)
T TIGR00540 281 SAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQL-LMKH---------- 348 (409)
T ss_pred HHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHH-HHHc----------
Confidence 99999999999999887532 33334445567889999999999998887 77 778899999 8888
Q ss_pred HhhcHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004339 325 EATHLEKAKELYT--RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 376 (760)
Q Consensus 325 ~~~~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 376 (760)
|++++|..+|+ .++...|++.. +..+|.++...|+.++|..+|++++..
T Consensus 349 --~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 349 --GEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred --ccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999 57778887665 558999999999999999999998765
No 61
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.8e-15 Score=149.32 Aligned_cols=415 Identities=13% Similarity=0.069 Sum_probs=294.1
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
|..+.-+...|...|+--..++++..|..+|+++|..+..+...|...+.+-++......|..++.+|+.+-|..-..|+
T Consensus 66 irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy 145 (677)
T KOG1915|consen 66 IRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY 145 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH
Confidence 44555567789999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhh
Q 004339 87 DLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 165 (760)
Q Consensus 87 ~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 165 (760)
.+..+-. .|+...|.+.|++.+...|. ..+|.....+-.+....+.|..+|++.+-..|.... ...-..+
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~w~P~------eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~---wikyarF 216 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWMEWEPD------EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSN---WIKYARF 216 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHH---HHHHHHH
Confidence 8877766 78999999999999999887 588988888888899999999999998876552211 0001111
Q ss_pred hhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHH
Q 004339 166 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY--VDAYLRLAAIAKA 243 (760)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~ 243 (760)
....+.+.....-+..++..++ .+-....++...|..-..+..++.|..+|.-++..-|.+ ...+-.+...--+
T Consensus 217 E~k~g~~~~aR~VyerAie~~~----~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLG----DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 1111111111122222222222 122233455667777778889999999999999888876 3344444444444
Q ss_pred cCCH---HHHH-----HHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCC------hHHHHHHHHH
Q 004339 244 RNNL---QLSI-----ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD------SYATLSLGNW 309 (760)
Q Consensus 244 ~g~~---~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~lg~~ 309 (760)
-|+. +.++ -.|+..+..+|.+.++|+.+..+....|+.+.-...|++++...|+.. .+.++-+..+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 4553 3333 346788889999999999999999999999999999999999877632 1222222222
Q ss_pred HHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc
Q 004339 310 NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN----LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 385 (760)
Q Consensus 310 ~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 385 (760)
++.. +...+.+.+.++|+.+|.+-|+. ..+|...|....++.+...|..++-.++-..| .
T Consensus 373 -lyeE---------le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP-----K- 436 (677)
T KOG1915|consen 373 -LYEE---------LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP-----K- 436 (677)
T ss_pred -HHHH---------HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC-----c-
Confidence 2221 23388999999999999998874 44677777777777777777777777777776 2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 386 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
+.++-....+-.++++++....+|++.+.. .|.+..+|...|.+-..+|+.+.|..+|.-|+...
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 334444445555666666666666666663 55556666666666666666666666666666543
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=1.5e-17 Score=185.34 Aligned_cols=245 Identities=13% Similarity=0.006 Sum_probs=152.8
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK---------GEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
.+..|+.+|++++.++|.+ +.++..+|.+|... +++.+|+..+++++.
T Consensus 276 ~~~~A~~~~~~Al~ldP~~-----a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~------------------ 332 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNS-----IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE------------------ 332 (553)
T ss_pred HHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh------------------
Confidence 4567777777777777765 66677777666543 336677777777765
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 246 (760)
.+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++...|+
T Consensus 333 -------------------------ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 333 -------------------------LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred -------------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 5566667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHh
Q 004339 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 326 (760)
Q Consensus 247 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~ 326 (760)
+++|+..+++++.++|.++.++..++.+++..|++++|+..+.+++...++..+..+..+|.+ |...
T Consensus 388 ~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~-l~~~------------ 454 (553)
T PRK12370 388 LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF-LSLK------------ 454 (553)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH-HHhC------------
Confidence 777777777777777776665555555555566666666666666655433355555666666 5555
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
|++++|...+.+++...|....++..++.+|...|+ .|...+..+++... ..+.....++.+|.-.|+-+.|.
T Consensus 455 G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~-----~~~~~~~~~~~~~~~~g~~~~~~ 527 (553)
T PRK12370 455 GKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ-----RIDNNPGLLPLVLVAHGEAIAEK 527 (553)
T ss_pred CCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh-----HhhcCchHHHHHHHHHhhhHHHH
Confidence 666666666666666666666666666666665553 55555555444332 11111122455555555555554
Q ss_pred HH
Q 004339 407 KM 408 (760)
Q Consensus 407 ~~ 408 (760)
.+
T Consensus 528 ~~ 529 (553)
T PRK12370 528 MW 529 (553)
T ss_pred HH
Confidence 44
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=3.1e-18 Score=175.52 Aligned_cols=249 Identities=16% Similarity=0.175 Sum_probs=164.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCC
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 280 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 280 (760)
|..|..+++.|...+|.-.|+.+++.+|.+..+|..||.+....++-..|+..+.++++++|++..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhhcCCCCChHHHHHHH---------HHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC--CCHHH
Q 004339 281 WVKAKETFRAASDATDGKDSYATLSLG---------NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYA 349 (760)
Q Consensus 281 ~~~A~~~~~~al~~~~~~~~~~~~~lg---------~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~ 349 (760)
-..|+.+|..-+...|+. .+...+ .- +... ..+..-..+|-.+....| .++.+
T Consensus 369 q~~Al~~L~~Wi~~~p~y---~~l~~a~~~~~~~~~~s-~~~~------------~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKY---VHLVSAGENEDFENTKS-FLDS------------SHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHHHhCccc---hhccccCccccccCCcC-CCCH------------HHHHHHHHHHHHHHHhCCCCCChhH
Confidence 777777776666544321 110000 00 0111 333444455666666666 56777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
...||.+|...|.|++|+++|+.|+...| ++..+|..||-++..-.+..+|+..|++|+.+ .|.-+.+.++||
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~P-----nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlg 505 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKP-----NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLG 505 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCC-----chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhh
Confidence 77777777777777777777777777777 66777777777777777777777777777776 566677777777
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCC----------hhHHhhHHHHHHHHHHh
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSN----------YTLRFDAGVAMQKFSAS 472 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~ 472 (760)
.+|..+|.|.+|..+|-.||.+.+.. ..+|-.|-.++..+++.
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 77777777777777777777765441 13555555555444443
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.7e-18 Score=175.96 Aligned_cols=248 Identities=14% Similarity=0.104 Sum_probs=173.3
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 253 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 253 (760)
+..+.+-.++..+..++..+|.++.+|..||.+....++-..|+..+.++++++|++..++..||..|...|.-..|+.+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 44555666777777777888999999999999999998888999999999999999999999999999999988899999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhh--cCch--------
Q 004339 254 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK--RAPK-------- 323 (760)
Q Consensus 254 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~--~~~~-------- 323 (760)
+.+-+...|....... +. ..+.+..- . ...+...+..+... |+...+... .++.
T Consensus 376 L~~Wi~~~p~y~~l~~--a~---~~~~~~~~--------~--s~~~~~~l~~i~~~-fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVS--AG---ENEDFENT--------K--SFLDSSHLAHIQEL-FLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHHHhCccchhccc--cC---ccccccCC--------c--CCCCHHHHHHHHHH-HHHHHHhCCCCCChhHHhhhHHH
Confidence 9888887765432111 00 01111100 0 00011222222222 222222111 1111
Q ss_pred -HHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 324 -LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 324 -~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
...|.|++|+.+|+.+|...|++...|+.||-.+....+..+|+..|++|+++.| ....++++||.+++.+|.|
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP-----~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP-----GYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC-----CeeeeehhhhhhhhhhhhH
Confidence 0128899999999999999999999999999999988899999999999999998 7888999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCC---c-----HHHHHHHHHHHHHhccHHHHH
Q 004339 403 ALAMKMYQNCLRKFYYNT---D-----AQILLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 403 ~~A~~~~~~al~~~~~~~---~-----~~~~~~la~~~~~~g~~~~A~ 442 (760)
.+|+.+|-.||.+..... . -.+|-.|-.++..+++.+-+.
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 999999999888753311 1 245555555555566555433
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=2.5e-16 Score=168.24 Aligned_cols=297 Identities=13% Similarity=0.089 Sum_probs=184.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHc
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL-GHIYVQLGQIEKAQELLRKAAKIDPRDAQAF-IDLGELLI 93 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~ 93 (760)
..+..|...+..|+|+.|...+.+..... +++..++.+ +.+....|+++.|..+|.++.+.+|++..+. ...+.++.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34677888888999999998887765543 345555555 5565999999999999999999999875443 44477777
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHH
Q 004339 94 -SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 172 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 172 (760)
.|+++.|+..++++....|++ +.++..++.+|...|+++.|+..+..+.+..+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~-----~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~--------------------- 218 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRH-----PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV--------------------- 218 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC---------------------
Confidence 889999999999999999997 89999999999999999999999999876321
Q ss_pred HHHhHHhhhhhhccCCCccCCcchHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCH
Q 004339 173 QFKDMQLFHRFENDGNHVELPWNKVT-----VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 247 (760)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 247 (760)
.++.... ++..+........+.+....++.......|+++.++..++..+...|+.
T Consensus 219 -------------------~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 219 -------------------GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred -------------------CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence 1111111 1111111111222223333333333333444555555555555555555
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhh
Q 004339 248 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327 (760)
Q Consensus 248 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 327 (760)
++|...+.++++ .|.++.+...++.+ .. +
T Consensus 280 ~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~------------------------------------------------~ 308 (398)
T PRK10747 280 DTAQQIILDGLK-RQYDERLVLLIPRL--KT------------------------------------------------N 308 (398)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHhhc--cC------------------------------------------------C
Confidence 555555555555 22233322222222 11 4
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 407 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 407 (760)
++..++..+++.++.+|+++..+..+|.++...|++.+|..+|++++...| + ...+..++.++..+|+.++|..
T Consensus 309 ~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-----~-~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-----D-AYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----C-HHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555555555555555555555555555555555555555554 2 3334455555555555555555
Q ss_pred HHHHHHhh
Q 004339 408 MYQNCLRK 415 (760)
Q Consensus 408 ~~~~al~~ 415 (760)
+|++++..
T Consensus 383 ~~~~~l~~ 390 (398)
T PRK10747 383 MRRDGLML 390 (398)
T ss_pred HHHHHHhh
Confidence 55555544
No 66
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=4.1e-16 Score=166.59 Aligned_cols=292 Identities=12% Similarity=0.072 Sum_probs=217.3
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
-|.+.. .|++..|...+.++....+. +...+...+.+....|+++.|..+|.++..
T Consensus 90 ~gl~a~~eGd~~~A~k~l~~~~~~~~~-----p~l~~llaA~aA~~~g~~~~A~~~l~~A~~------------------ 146 (398)
T PRK10747 90 QALLKLAEGDYQQVEKLMTRNADHAEQ-----PVVNYLLAAEAAQQRGDEARANQHLERAAE------------------ 146 (398)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------
Confidence 344433 67888777655554333211 233334445555888888888888888876
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 245 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 245 (760)
.+|+.. ......+.++...|+++.|+..+++++...|+++.++..++.+|...|
T Consensus 147 -------------------------~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 147 -------------------------LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred -------------------------cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 344443 233345888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHHcCCChH--------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhh
Q 004339 246 NLQLSIELVNEALKVNGKYPN--------ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 317 (760)
Q Consensus 246 ~~~~A~~~~~~al~~~p~~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~ 317 (760)
+++.|+.++..+.+..+.++. ++..+........+.+....++.......|. ++.+...++.. +...
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~-~~~~~~~~A~~-l~~~--- 276 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH-QVALQVAMAEH-LIEC--- 276 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC-CHHHHHHHHHH-HHHC---
Confidence 888888888888877665443 2222222222333445555555555555554 78888888888 8888
Q ss_pred hhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 004339 318 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 397 (760)
Q Consensus 318 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~ 397 (760)
|+.+.|...+.+++.. |.++.....++.+ ..+++.+++..+++.++..| +++..++.+|.++.
T Consensus 277 ---------g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P-----~~~~l~l~lgrl~~ 339 (398)
T PRK10747 277 ---------DDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHG-----DTPLLWSTLGQLLM 339 (398)
T ss_pred ---------CCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHH
Confidence 9999999999999984 4455544444443 44999999999999999999 89999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 398 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
..+++++|..+|++++.. .++...+..++.++..+|+.++|..+|++++.+.
T Consensus 340 ~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999995 3556667899999999999999999999998864
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=4.5e-17 Score=148.50 Aligned_cols=205 Identities=24% Similarity=0.290 Sum_probs=103.3
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-c
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-S 94 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~ 94 (760)
+.+.+|.-|+..|++..|...++++|+.+|++..+|..+|.+|...|..+.|.+.|++++.++|++.+++.+.|..++ +
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 455555556666666666666666666666666666666666666666666666666666665555555555554444 4
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
|.+++|...|.+|+.. |..+. ++.+|.++|.|..+.|+++.|..+|++++.
T Consensus 117 g~~~eA~q~F~~Al~~-P~Y~~--~s~t~eN~G~Cal~~gq~~~A~~~l~raL~-------------------------- 167 (250)
T COG3063 117 GRPEEAMQQFERALAD-PAYGE--PSDTLENLGLCALKAGQFDQAEEYLKRALE-------------------------- 167 (250)
T ss_pred CChHHHHHHHHHHHhC-CCCCC--cchhhhhhHHHHhhcCCchhHHHHHHHHHH--------------------------
Confidence 4555555555544432 22111 234444455555555555555555544444
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 254 (760)
.+|+.+.....++..++..|+|..|..++.......+.....+.....+....|+-..+-.+=
T Consensus 168 -----------------~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 168 -----------------LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred -----------------hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 333444444444444444555555544444444444444444444444444444444444444
Q ss_pred HHHHHHcCCChH
Q 004339 255 NEALKVNGKYPN 266 (760)
Q Consensus 255 ~~al~~~p~~~~ 266 (760)
.++...+|..+.
T Consensus 231 ~qL~r~fP~s~e 242 (250)
T COG3063 231 AQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhCCCcHH
Confidence 444444444433
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=5.5e-15 Score=151.69 Aligned_cols=427 Identities=13% Similarity=0.121 Sum_probs=279.2
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI- 93 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 93 (760)
..++.-...+...|+|++|+....+++...|++..+++..-.++.+.++|++|+.+.++-....-.+ ...+.-+.|.+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 4667777788899999999999999999999999999999999999999999995544432222112 22256777766
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.+..++|+..+. .+++. +..++...|.+++++|+|++|+.+|+.++..+...... ......+.
T Consensus 92 lnk~Dealk~~~---~~~~~-----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~---------~~r~nl~a 154 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRL-----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE---------ERRANLLA 154 (652)
T ss_pred cccHHHHHHHHh---ccccc-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH---------HHHHHHHH
Confidence 789999999998 22222 25678889999999999999999999997643211000 00000000
Q ss_pred HHhHHhhhhhhc-cCCCccCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC---------------CcHHHHHH
Q 004339 174 FKDMQLFHRFEN-DGNHVELPW-NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ---------------DYVDAYLR 236 (760)
Q Consensus 174 ~~~~~~~~~l~~-~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---------------~~~~~~~~ 236 (760)
...++.. ....+...| +....+|+.|.++...|+|.+|++.++.++.+.. .-..+...
T Consensus 155 -----~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ 229 (652)
T KOG2376|consen 155 -----VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ 229 (652)
T ss_pred -----HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 0000000 011112223 3668999999999999999999999999954421 12346788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC---CH-H-HHHHHHHHhhhcC---------CCCChHH
Q 004339 237 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND---DW-V-KAKETFRAASDAT---------DGKDSYA 302 (760)
Q Consensus 237 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~-~-~A~~~~~~al~~~---------~~~~~~~ 302 (760)
|+.++...|+..+|...|..++..+|.+........+-+.... ++ + .++..++...... .......
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i 309 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAI 309 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988765532222211111100 00 0 0000110000000 0000001
Q ss_pred HHHHHHHHHHHH-H---hh-----hhcCc------------hHHhhcHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc
Q 004339 303 TLSLGNWNYFAA-L---RN-----EKRAP------------KLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEK 360 (760)
Q Consensus 303 ~~~lg~~~y~~~-~---~~-----~~~~~------------~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 360 (760)
+.+.+.+.++.. . +. ....| ......+..|..++......+|.+ ..+...++.+.+..
T Consensus 310 ~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 310 YRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 111111100000 0 00 00000 011145788888999988889987 66888899999999
Q ss_pred CChHHHHHHHH--------HHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-----HHHHHH
Q 004339 361 GQFDVSKDLFT--------QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLY 427 (760)
Q Consensus 361 g~~~~A~~~~~--------~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~ 427 (760)
|++..|+.++. ...+.. ..|.+-..+-..++..++-+.|...+..++..+..... ...+..
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~------~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAK------HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhc------cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 99999999999 444433 45667777777888888888888888888776432211 344556
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
++.+-.+.|+-++|...+++.++.+|++..+...+..+|..+.
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 6777778899999999999999999999998888877765553
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=4.2e-17 Score=148.69 Aligned_cols=205 Identities=20% Similarity=0.132 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 126 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 126 (760)
..+...||.-|+..|++..|...++++|+.+|++..+|..++.+|. .|..+.|.+.|++|+.+.|++ ..++++.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~-----GdVLNNY 109 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-----GDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc-----cchhhhh
Confidence 4688999999999999999999999999999999999999999999 899999999999999999998 7999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHH
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 206 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~ 206 (760)
|.+++.+|.|++|...|.+++... ..+..+.++-++|.|
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P-----------------------------------------~Y~~~s~t~eN~G~C 148 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADP-----------------------------------------AYGEPSDTLENLGLC 148 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCC-----------------------------------------CCCCcchhhhhhHHH
Confidence 999999999999999999998732 455667899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 286 (760)
..+.|+++.|..+|++++..+|+.+.+...++..++..|++-.|..+++......+-....+.....+....|+-..+..
T Consensus 149 al~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 149 ALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred HhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888888888899999999998
Q ss_pred HHHHhhhcCCCC
Q 004339 287 TFRAASDATDGK 298 (760)
Q Consensus 287 ~~~~al~~~~~~ 298 (760)
+=.+....+|..
T Consensus 229 Y~~qL~r~fP~s 240 (250)
T COG3063 229 YQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhCCCc
Confidence 888888888863
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=7.6e-17 Score=164.84 Aligned_cols=231 Identities=14% Similarity=0.075 Sum_probs=183.4
Q ss_pred CCHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHH
Q 004339 211 HDTVAASVLYRLILFKYQ----DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 211 g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 286 (760)
+..+.++..+.+++...| ..+..|+.+|.++...|++.+|+..|.+++.++|+++.+|+.+|.++...|+++.|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 466788888888886443 3467799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHH
Q 004339 287 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 366 (760)
Q Consensus 287 ~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 366 (760)
.|.+++.+.|. ...++..+|.+ ++.. |+++.|+..|++++..+|+++..... ..++...+++.+|
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~-l~~~------------g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A 184 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIA-LYYG------------GRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQA 184 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHH
Confidence 99999999988 78899999999 8888 99999999999999999998853222 2234467889999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc-----CCCcHHHHHHHHHHHHHhccHHHH
Q 004339 367 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY-----YNTDAQILLYLARTHYEAEQWQDC 441 (760)
Q Consensus 367 ~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~la~~~~~~g~~~~A 441 (760)
+..|.+++...+ +..|. .+.+++..|++..+ ..+..+...+. .+..+.+|+++|.++...|++++|
T Consensus 185 ~~~l~~~~~~~~-------~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 185 KENLKQRYEKLD-------KEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHHHHHHHhhCC-------ccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999988775433 22232 46666777877554 34444443211 233478999999999999999999
Q ss_pred HHHHHHHHHhCC-CChhHHhhHHHH
Q 004339 442 KKSLLRAIHLAP-SNYTLRFDAGVA 465 (760)
Q Consensus 442 ~~~~~~al~~~p-~~~~~~~~la~~ 465 (760)
+.+|++|+.++| +.....+.+..+
T Consensus 256 ~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 256 AALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 999999999997 555555554443
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=7.6e-17 Score=160.30 Aligned_cols=200 Identities=23% Similarity=0.187 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 126 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 126 (760)
+.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++. .|+++.|+..|.+++...|.. ..++..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~ 105 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-----GDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHH
Confidence 3444444444444444444444444444444444444444444444 344444444444444444433 3455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHH
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 206 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~ 206 (760)
|.++...|++++|+..|.+++... ..+....+++.+|.+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDP-----------------------------------------LYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcc-----------------------------------------ccccchHHHHHHHHH
Confidence 555555555555555555554311 112334455555666
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 286 (760)
+...|+++.|..+|.+++...|.+..++..+|.++...|++++|+.++.+++...|.++..+..++.++...|+++.|..
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 66666666666666666666666555666666666666666666666666665555555555556666666666666665
Q ss_pred HHHHhhh
Q 004339 287 TFRAASD 293 (760)
Q Consensus 287 ~~~~al~ 293 (760)
+...+..
T Consensus 225 ~~~~~~~ 231 (234)
T TIGR02521 225 YGAQLQK 231 (234)
T ss_pred HHHHHHh
Confidence 5554443
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=1.8e-16 Score=162.08 Aligned_cols=216 Identities=16% Similarity=0.167 Sum_probs=172.2
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
..+..++.+|.+|...|++..|+..|.+++..+|+++.+|+.+|.++...|+++.|+..|.+++.++|++..++..+|.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 354 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 354 (760)
+...|++++|+..|.+++...|. ++.....+ .+ +... +++.+|+..|.+++...+...+. .+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~-~~~~~~~~-~l-~~~~------------~~~~~A~~~l~~~~~~~~~~~~~---~~ 203 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPN-DPYRALWL-YL-AESK------------LDPKQAKENLKQRYEKLDKEQWG---WN 203 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH-HH-HHcc------------CCHHHHHHHHHHHHhhCCccccH---HH
Confidence 99999999999999999999987 44321111 11 2223 78999999998877654333222 45
Q ss_pred HHHHHcCChHHHHHHHHHHH-------HHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC-CcHHHHH
Q 004339 355 VVLAEKGQFDVSKDLFTQVQ-------EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TDAQILL 426 (760)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~ 426 (760)
.++...|++..+ ..+..+. ++.| ..+.+|+++|.++..+|++++|+.+|++++.. +| +.++..+
T Consensus 204 ~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~-----~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~--~~~~~~e~~~ 275 (296)
T PRK11189 204 IVEFYLGKISEE-TLMERLKAGATDNTELAE-----RLCETYFYLAKYYLSLGDLDEAAALFKLALAN--NVYNFVEHRY 275 (296)
T ss_pred HHHHHccCCCHH-HHHHHHHhcCCCcHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCchHHHHHH
Confidence 666667776554 2444433 4444 66789999999999999999999999999996 44 3355555
Q ss_pred HHHHHHHHhc
Q 004339 427 YLARTHYEAE 436 (760)
Q Consensus 427 ~la~~~~~~g 436 (760)
.+..+....+
T Consensus 276 ~~~e~~~~~~ 285 (296)
T PRK11189 276 ALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHh
Confidence 5554444433
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=3.1e-16 Score=155.93 Aligned_cols=204 Identities=17% Similarity=0.111 Sum_probs=169.7
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 194 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
+..+.+++.+|.++...|++++|+..|.+++..+|.+..++..+|.++...|++++|+.++.+++...|.++.++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCC-CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHH
Q 004339 274 LELKNDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 352 (760)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 352 (760)
++...|++.+|+.+|.+++...+ ......+..+|.+ +... |+++.|..+|.+++..+|.++.++..
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC-ALKA------------GDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 99999999999999999987532 1244566677777 7777 88888888888888888887777888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 353 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 353 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
+|.++...|++++|+.++.+++...| ..+..+..++.++...|+++.|..+.+.+...
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYN-----QTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888888888888888888877755 56777777777888888888887776666543
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1e-14 Score=140.18 Aligned_cols=362 Identities=16% Similarity=0.106 Sum_probs=224.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHH
Q 004339 24 QLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAAL 101 (760)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~ 101 (760)
++...+|..|+.+++-.+..+... ...-..+|.|++.+|+|++|+..|.-+...+.-+...+.+|+.|+. .|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 344556666666666555433222 2444556666666666666666666666554445556666666655 56666655
Q ss_pred HHHHHHHH-----------------------HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcc
Q 004339 102 DAFKTART-----------------------LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 158 (760)
Q Consensus 102 ~~~~~al~-----------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 158 (760)
..-.++-+ ..... ....+-...||.+++..-.|.+|+.+|.+++.
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L--qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---------- 179 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL--QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---------- 179 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH--hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 54433211 00000 00123345566677777777777777777775
Q ss_pred cchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 004339 159 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 238 (760)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 238 (760)
.+|....+-..+|.||+++.-|+-+..++.-.+...|+.+-+...++
T Consensus 180 ---------------------------------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 180 ---------------------------------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred ---------------------------------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 55666677778888999998888888888888888888888888777
Q ss_pred HHHHHc--CCHHHHH----------------HHHH----------HHHHHcC----CChHHHHHHHHHHhhcCCHHHHHH
Q 004339 239 AIAKAR--NNLQLSI----------------ELVN----------EALKVNG----KYPNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 239 ~~~~~~--g~~~~A~----------------~~~~----------~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~ 286 (760)
...++. |+..++. .+++ -+++.-| ..|++..+|...|+.+++..+|+.
T Consensus 227 cn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~ 306 (557)
T KOG3785|consen 227 CNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAIS 306 (557)
T ss_pred HHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHH
Confidence 766553 2222111 1111 1122222 245677788888888888888888
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCChH
Q 004339 287 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ--HTSNLYAANGAGVVLAEKGQFD 364 (760)
Q Consensus 287 ~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~ 364 (760)
.++. ..|. .++-++..|.+ +........ ...+..-|...|+-+-.. .-+.+.....+|.+++-..+|+
T Consensus 307 L~Kd---l~Pt-tP~EyilKgvv-~aalGQe~g-----SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFd 376 (557)
T KOG3785|consen 307 LCKD---LDPT-TPYEYILKGVV-FAALGQETG-----SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFD 376 (557)
T ss_pred HHhh---cCCC-ChHHHHHHHHH-HHHhhhhcC-----cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence 7764 3344 66666666666 554411110 013444555555443221 1223445566777777777888
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CCcHHHHHHHHHHHHHhccHHHHHH
Q 004339 365 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-NTDAQILLYLARTHYEAEQWQDCKK 443 (760)
Q Consensus 365 ~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 443 (760)
+.+.++..+....- ++....+++|.++...|+|.+|.+.|-++-. +. .+.......||+||...|.+.-|..
T Consensus 377 dVl~YlnSi~sYF~-----NdD~Fn~N~AQAk~atgny~eaEelf~~is~--~~ikn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 377 DVLTYLNSIESYFT-----NDDDFNLNLAQAKLATGNYVEAEELFIRISG--PEIKNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHhc-----CcchhhhHHHHHHHHhcChHHHHHHHhhhcC--hhhhhhHHHHHHHHHHHHhcCCchHHHH
Confidence 88888877766654 5667788899999999999999988876654 23 2235556688999999999988877
Q ss_pred HHHH
Q 004339 444 SLLR 447 (760)
Q Consensus 444 ~~~~ 447 (760)
.+-+
T Consensus 450 ~~lk 453 (557)
T KOG3785|consen 450 MMLK 453 (557)
T ss_pred HHHh
Confidence 7643
No 75
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-16 Score=157.22 Aligned_cols=295 Identities=16% Similarity=0.105 Sum_probs=165.0
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-c
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-S 94 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~ 94 (760)
-....|..++....|..|+..|..++...|+++..|...+.++...|+|+.|.-..++.++++|..+..+...+.|+. .
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 456677777888888888888888888888888888888888888888888888888888888887777777776665 3
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
++...|...|+. ..++ ....|+..++..+..
T Consensus 131 ~~~i~A~~~~~~-------------~~~~-----------~~anal~~~~~~~~s------------------------- 161 (486)
T KOG0550|consen 131 SDLIEAEEKLKS-------------KQAY-----------KAANALPTLEKLAPS------------------------- 161 (486)
T ss_pred HHHHHHHHHhhh-------------hhhh-----------HHhhhhhhhhccccc-------------------------
Confidence 444444443330 0100 111222222222110
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 254 (760)
....|....+.+.-+.++...|+++.|...--.++++++.+..+++..|.+++..++.+.|+..|
T Consensus 162 ---------------~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf 226 (486)
T KOG0550|consen 162 ---------------HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHF 226 (486)
T ss_pred ---------------ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHH
Confidence 00123333444455555555566666655555555555555555555555555555555555555
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHH
Q 004339 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 334 (760)
Q Consensus 255 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 334 (760)
++++.++|++..+-...-. +. ....+..-|+- .+.. |++..|.+
T Consensus 227 ~qal~ldpdh~~sk~~~~~----------------------~k-~le~~k~~gN~-~fk~------------G~y~~A~E 270 (486)
T KOG0550|consen 227 QQALRLDPDHQKSKSASMM----------------------PK-KLEVKKERGND-AFKN------------GNYRKAYE 270 (486)
T ss_pred hhhhccChhhhhHHhHhhh----------------------HH-HHHHHHhhhhh-Hhhc------------cchhHHHH
Confidence 5555555543321111000 00 11112222333 3333 55555555
Q ss_pred HHHHHHhhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 335 LYTRVIVQHTSN----LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 410 (760)
Q Consensus 335 ~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (760)
+|..+|.++|++ ...|.++|.+...+|+..+|+.....++.++| ....++...|.|+..+++|++|++.|+
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-----syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-----SYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555543 22455555555555555555555555555555 455555555555555555555555555
Q ss_pred HHHhh
Q 004339 411 NCLRK 415 (760)
Q Consensus 411 ~al~~ 415 (760)
++++.
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 55554
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=3.1e-15 Score=158.42 Aligned_cols=247 Identities=14% Similarity=0.109 Sum_probs=204.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-- 261 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 261 (760)
..|....+...++..|...|+|+.|+..|+.++.. +|........+|.+|...+++.+|+.+|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 56777778888999999999999999999999988 66666667779999999999999999999999863
Q ss_pred ------CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC-------CChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 262 ------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-------KDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 262 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
|....++..|+.+|...|++.+|..+++.++.+... .-...+..++.+ +... +.
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~-~~~~------------~~ 340 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI-LQSM------------NE 340 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH-HHHh------------cc
Confidence 333458889999999999999999999999886422 123345566666 6666 99
Q ss_pred HHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHHHH
Q 004339 329 LEKAKELYTRVIVQH--------TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHVYF 397 (760)
Q Consensus 329 ~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~~~ 397 (760)
++.|..+|++++++. |.-+..+.+||.+|..+|+|.+|..+|++|+.+.. +...+.....++++|..|.
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 999999999988762 23456889999999999999999999999999874 1112244667889999999
Q ss_pred HcCCHHHHHHHHHHHHhhh----c-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 398 AQGNFALAMKMYQNCLRKF----Y-YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~----~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
+.+++..|...|..++... + .|+-...+.+||.+|..+|+++.|+++..+++..
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999987764 1 2233778889999999999999999999998853
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1e-14 Score=140.28 Aligned_cols=379 Identities=15% Similarity=0.124 Sum_probs=278.4
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------cCC-
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK--------------IDP- 79 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p- 79 (760)
..-..+|.|++..|+|++|+..|.-+...+..+.+.+.+||.|++-+|.|.+|..+..++-+ ++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 35577899999999999999999999887777889999999999999999999887766532 111
Q ss_pred -----------CcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004339 80 -----------RDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147 (760)
Q Consensus 80 -----------~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 147 (760)
+...-.+.|+.+.. ...|.+|+..|.+++.-+|.. ..+-..+|.||+++.-|+-+..++.-.+
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey-----~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY-----IALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh-----hhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 11122344555544 558999999999999998886 6677889999999999999999888877
Q ss_pred cccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-----
Q 004339 148 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL----- 222 (760)
Q Consensus 148 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----- 222 (760)
. ..|+.+.+....+..+++.=+-..|..-...
T Consensus 213 ~-------------------------------------------q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~ 249 (557)
T KOG3785|consen 213 R-------------------------------------------QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNI 249 (557)
T ss_pred H-------------------------------------------hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc
Confidence 6 5667777777766666554222222211111
Q ss_pred -----------------------HHHHcC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 223 -----------------------ILFKYQ----DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 223 -----------------------~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
+++.-| ..+.+.++|+..|+.+++..+|+.++.. ++|..|.-+...|.++
T Consensus 250 ~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~ 326 (557)
T KOG3785|consen 250 DQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVF 326 (557)
T ss_pred cccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHH
Confidence 111122 2467889999999999999999988754 5899999999999999
Q ss_pred hhcCCHHHHHHHHHHhh---hcCCC-----CChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH
Q 004339 276 LKNDDWVKAKETFRAAS---DATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 347 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al---~~~~~-----~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 347 (760)
...|+-....++++-+- .+... ........++.+ ++.. .+|+..+.++...-....++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fFL~------------~qFddVl~YlnSi~sYF~NdD 393 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FFLS------------FQFDDVLTYLNSIESYFTNDD 393 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HHHH------------HHHHHHHHHHHHHHHHhcCcc
Confidence 98887544444333222 21111 012223456666 6666 889999999998888888888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHH
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILL 426 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~ 426 (760)
...+++|..++..|+|.+|.+.|-++-...- .+.......||.||+..+...-|..+|-+.- .|.+ ...+-
T Consensus 394 ~Fn~N~AQAk~atgny~eaEelf~~is~~~i----kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~----t~~e~fsLLq 465 (557)
T KOG3785|consen 394 DFNLNLAQAKLATGNYVEAEELFIRISGPEI----KNKILYKSMLARCYIRNKKPQLAWDMMLKTN----TPSERFSLLQ 465 (557)
T ss_pred hhhhHHHHHHHHhcChHHHHHHHhhhcChhh----hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC----CchhHHHHHH
Confidence 8899999999999999999999987653321 1345566789999999999999998875432 2333 56666
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 427 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 427 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
.+|..+++.+.+--|.+.|...-.++|+-...--..|-|
T Consensus 466 lIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 466 LIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchH
Confidence 889999999999999999998888888654444444444
No 78
>PLN02789 farnesyltranstransferase
Probab=99.73 E-value=2e-15 Score=153.50 Aligned_cols=241 Identities=12% Similarity=-0.048 Sum_probs=208.5
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
..+....++-.+-.++...+.+++|+..+.+++.++|.+..+|...+.++..+| .+.+++.++.+++..+|++..+|..
T Consensus 32 y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 32 YTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 344556677666677888899999999999999999999999999999999998 6899999999999999999999999
Q ss_pred HHHHHhhcCCH--HHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 271 LGDLELKNDDW--VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 271 la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
.+.++...|.. ..++.++.+++...|. +..+|...+.+ +... |.++.|+.++.++|..+|.+..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~-l~~l------------~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWV-LRTL------------GGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHHHCCCchh
Confidence 99999888874 7889999999999998 89999999999 8888 9999999999999999999999
Q ss_pred HHHHHHHHHHHc---CCh----HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhc
Q 004339 349 AANGAGVVLAEK---GQF----DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFY 417 (760)
Q Consensus 349 ~~~~la~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 417 (760)
+|+.++.++... |.+ +.++.+..+++..+| .+..+|..++.++.. +++..+|+..+..++..
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-----~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-- 250 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-----RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-- 250 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-----CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--
Confidence 999999998876 333 478888999999999 889999999999988 45677899999998874
Q ss_pred CCCcHHHHHHHHHHHHHhc------------------cHHHHHHHHHHHHHhCC
Q 004339 418 YNTDAQILLYLARTHYEAE------------------QWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 418 ~~~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p 453 (760)
.+..+.++..|+.+|.... ...+|..++...-+.+|
T Consensus 251 ~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 251 DSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred cCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 6778899999999998643 23556666666655555
No 79
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.7e-16 Score=154.49 Aligned_cols=275 Identities=14% Similarity=0.107 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+.-....|..++....|..|+..|..++. ..|+++..
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~-------------------------------------------~~pd~a~y 85 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAID-------------------------------------------MCPDNASY 85 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHH-------------------------------------------hCccchhh
Confidence 34456678888999999999999999998 55677888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHc---
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL---------------KVN--- 261 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------------~~~--- 261 (760)
|.+.+.++...|+|+.|.-..+..+.+.|.....+...+.++...+...+|...|+..- ..+
T Consensus 86 y~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~ 165 (486)
T KOG0550|consen 86 YSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSRE 165 (486)
T ss_pred hchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCC
Confidence 99999999999999999999999999999999888899999888888877776554211 111
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh
Q 004339 262 GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 341 (760)
Q Consensus 262 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 341 (760)
|....+....+.++...|++..|+..--.++++.+. +.++++..|.+ ++.. .+.+.|+..|++++.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~-~yy~------------~~~~ka~~hf~qal~ 231 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLC-LYYN------------DNADKAINHFQQALR 231 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccc-cccc------------cchHHHHHHHhhhhc
Confidence 223345667788999999999999999999998887 88888888988 7766 899999999999999
Q ss_pred hCCCCHH------------HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 342 QHTSNLY------------AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 409 (760)
Q Consensus 342 ~~p~~~~------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (760)
++|+... .+-.-|.-.++.|+|..|.++|..+|.++|.+.. .++..|.++|.+...+|+..+|+...
T Consensus 232 ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 232 LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-TNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-hhHHHHHHhHhhhcccCCchhhhhhh
Confidence 9997543 5666788899999999999999999999996554 46888999999999999999999999
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 410 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 410 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
..++.+ ++.-..++...|.|+..+++|+.|++.|++|++...+
T Consensus 311 ~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 311 NEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999997 6667999999999999999999999999999998765
No 80
>PLN02789 farnesyltranstransferase
Probab=99.73 E-value=8.8e-16 Score=156.10 Aligned_cols=224 Identities=14% Similarity=0.019 Sum_probs=197.0
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHH
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
|...|.+..++-.+-.++...+.+++|+..+.++|.++|.+..+|..++.++..+| .+.+++.++.+++..+|++..+|
T Consensus 30 i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW 109 (320)
T PLN02789 30 IAYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW 109 (320)
T ss_pred eeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh
Confidence 34445555566555566778899999999999999999999999999999999998 68999999999999999999999
Q ss_pred HHHHHHHc-cCC--HhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchh
Q 004339 86 IDLGELLI-SSD--TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162 (760)
Q Consensus 86 ~~la~~~~-~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 162 (760)
...+.++. .+. +..++.++.+++.++|++ ..+|...+.++...|.+++|+.++.++|.
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-----y~AW~~R~w~l~~l~~~~eeL~~~~~~I~-------------- 170 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKN-----YHAWSHRQWVLRTLGGWEDELEYCHQLLE-------------- 170 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------
Confidence 99998876 564 378899999999999997 89999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHcCCcHHHHH
Q 004339 163 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI---HDT----VAASVLYRLILFKYQDYVDAYL 235 (760)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~~~~~l~~~p~~~~~~~ 235 (760)
.+|.+..+|+.++.++... |.+ +.++.+..+++..+|.+..+|.
T Consensus 171 -----------------------------~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~ 221 (320)
T PLN02789 171 -----------------------------EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWR 221 (320)
T ss_pred -----------------------------HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHH
Confidence 5678889999999888776 333 5788888999999999999999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 236 RLAAIAKA----RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 236 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
.++.++.. .+...+|+..+..++...|.++.++..|+.+|...
T Consensus 222 Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 222 YLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 99999987 45667899999999999999999999999999863
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.72 E-value=1.1e-13 Score=148.77 Aligned_cols=349 Identities=14% Similarity=0.125 Sum_probs=247.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
.+++...+.++...|++++|+.++..... .-++...+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~-------------------------------------------~I~Dk~~~ 40 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK-------------------------------------------QILDKLAV 40 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh-------------------------------------------hCCCHHHH
Confidence 57788888999999999999999987654 34467788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
+-..|.++..+|++++|...|..++..+|++...+..+..+..... ....-..+|......+|....+...- ..
T Consensus 41 ~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~-L~ 119 (517)
T PF12569_consen 41 LEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLP-LD 119 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhh-cc
Confidence 8899999999999999999999999999999999999988873333 56777888888888888755443322 22
Q ss_pred HhhcCCHHHH-HHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHH---HHhh--------
Q 004339 275 ELKNDDWVKA-KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR---VIVQ-------- 342 (760)
Q Consensus 275 ~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~---al~~-------- 342 (760)
+..-..|... ..++...+... -|..+..+-.+ |... ....-...++.. .+..
T Consensus 120 ~~~g~~F~~~~~~yl~~~l~Kg---vPslF~~lk~L-y~d~------------~K~~~i~~l~~~~~~~l~~~~~~~~~~ 183 (517)
T PF12569_consen 120 FLEGDEFKERLDEYLRPQLRKG---VPSLFSNLKPL-YKDP------------EKAAIIESLVEEYVNSLESNGSFSNGD 183 (517)
T ss_pred cCCHHHHHHHHHHHHHHHHhcC---CchHHHHHHHH-HcCh------------hHHHHHHHHHHHHHHhhcccCCCCCcc
Confidence 2222234333 34445555443 33344444444 4322 222222222222 2211
Q ss_pred ----CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004339 343 ----HTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 343 ----~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 416 (760)
.|.. .++++.+|..|...|++++|+.++.+++...| +.++.++..|.+|-..|++.+|...++.+..+
T Consensus 184 ~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-----t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L- 257 (517)
T PF12569_consen 184 DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-----TLVELYMTKARILKHAGDLKEAAEAMDEAREL- 257 (517)
T ss_pred ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-
Confidence 1222 35778899999999999999999999999999 88999999999999999999999999999997
Q ss_pred cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHH
Q 004339 417 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVR 496 (760)
Q Consensus 417 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~ 496 (760)
+..|-.+....+..+++.|++++|...+.....-+- ++....+-..|++... ..+.+.....++..|+..+....+
T Consensus 258 -D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~--e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 258 -DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFET--ECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred -ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 778888888999999999999999999987755442 3332222223332221 134445555689999999999999
Q ss_pred HHHHHhhcCCCCCCCCCHHHH--HHHHHHH--HHHHHHHHHHHHHHH
Q 004339 497 VFSHLSAASNLHLHGFDEKKI--NTHVEYC--KHLLDAAKIHREAAE 539 (760)
Q Consensus 497 ~~~~l~~~~~~~~~~~~~~~~--~~~~~~~--~~~l~~~~~~~~~~~ 539 (760)
+|..+....-. +|.|++++. +..+.+. .+-+......++.+.
T Consensus 334 ~f~~~~~DQfD-FH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~ 379 (517)
T PF12569_consen 334 HFDDFEEDQFD-FHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAK 379 (517)
T ss_pred HHHHHhccccc-HHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 99999887765 678888843 4444443 344444444444443
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.6e-14 Score=137.81 Aligned_cols=274 Identities=16% Similarity=0.160 Sum_probs=229.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHH
Q 004339 124 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 203 (760)
Q Consensus 124 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~l 203 (760)
+..|.-+.-..+.++|+..|..++. .+|....+.+.|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~-------------------------------------------~d~~t~e~~ltL 75 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQ-------------------------------------------EDPETFEAHLTL 75 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHh-------------------------------------------cCchhhHHHHHH
Confidence 4456666778899999999999987 677888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 204 ARLLEQIHDTVAASVLYRLILFKYQDY-----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
|.+|...|..+.|+.+-+.++. .|+. ..+...||.-|+..|-++.|...|..+......-..++..|..+|...
T Consensus 76 GnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t 154 (389)
T COG2956 76 GNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT 154 (389)
T ss_pred HHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh
Confidence 9999999999999999888876 4543 356788999999999999999999998876666677999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004339 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (760)
.+|.+|+..-.+...+.+... -+.++.+ |+........ ..+++.|+..+.+++..+|+++.+-+.+|.++.
T Consensus 155 reW~KAId~A~~L~k~~~q~~---~~eIAqf-yCELAq~~~~-----~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~ 225 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTY---RVEIAQF-YCELAQQALA-----SSDVDRARELLKKALQADKKCVRASIILGRVEL 225 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccc---hhHHHHH-HHHHHHHHhh-----hhhHHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence 999999999999998876532 1233444 3333222211 189999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccH
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 438 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 438 (760)
..|+|..|++.+..+++.+|. -.+.+...|..||..+|+..+.+.++..+...+ +.+.+...++..-....-.
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~----yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~---~g~~~~l~l~~lie~~~G~ 298 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPE----YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN---TGADAELMLADLIELQEGI 298 (389)
T ss_pred hccchHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc---CCccHHHHHHHHHHHhhCh
Confidence 999999999999999999983 447889999999999999999999999999953 4566667777777777788
Q ss_pred HHHHHHHHHHHHhCCCChh
Q 004339 439 QDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 439 ~~A~~~~~~al~~~p~~~~ 457 (760)
+.|..++.+-+...|+-..
T Consensus 299 ~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 299 DAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred HHHHHHHHHHHhhCCcHHH
Confidence 8999999999999996433
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.72 E-value=1.3e-15 Score=161.14 Aligned_cols=250 Identities=19% Similarity=0.150 Sum_probs=209.2
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--- 77 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 77 (760)
.+|.-..+...+|..|..+|+|+.|+..|+.++.. .|.-...+..+|.+|..++++.+|+.+|++++.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666777888999999999999999999999998 5655666777999999999999999999999976
Q ss_pred -----CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 78 -----DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGE---EVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 78 -----~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
+|..+.++.+||.+|. .|++.+|..++++|+.+...... +.....+.+++.++...+.+++|+.++.++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4666778999999998 88999999999999999876321 22356788899999999999999999999987
Q ss_pred ccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-
Q 004339 149 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY- 227 (760)
Q Consensus 149 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~- 227 (760)
+-. ......++..+.++.+||.+|..+|++.+|..+|++++.+.
T Consensus 354 i~~-----------------------------------~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 354 IYL-----------------------------------DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHH-----------------------------------hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 310 11112445667889999999999999999999999999764
Q ss_pred -------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-------CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 004339 228 -------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-------GKYPNALSMLGDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 228 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (760)
+.....+..+|..|...+.+..|...|..+..+. |+....+.+|+.+|..+|+++.|+++...++.
T Consensus 399 ~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 399 ELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3345668889999999999999999999887653 34445788999999999999999999998885
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.7e-14 Score=137.57 Aligned_cols=267 Identities=18% Similarity=0.172 Sum_probs=179.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004339 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 132 (760)
Q Consensus 54 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 132 (760)
.|.-+.-..+.++|+..|..+++.+|...++.+.||.+|. .|..+.|+.+.+..+.. |+.......-++..||.-|..
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 3444444556666666666666666666666666666666 56666666665554432 222111124567777888888
Q ss_pred cCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCC
Q 004339 133 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 212 (760)
Q Consensus 133 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 212 (760)
.|-++.|...|..+... ..--..++..|..+|....+
T Consensus 120 aGl~DRAE~~f~~L~de-------------------------------------------~efa~~AlqqLl~IYQ~tre 156 (389)
T COG2956 120 AGLLDRAEDIFNQLVDE-------------------------------------------GEFAEGALQQLLNIYQATRE 156 (389)
T ss_pred hhhhhHHHHHHHHHhcc-------------------------------------------hhhhHHHHHHHHHHHHHhhH
Confidence 88888888888777652 11234567777788888888
Q ss_pred HHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHH
Q 004339 213 TVAASVLYRLILFKYQDY-----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 287 (760)
Q Consensus 213 ~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 287 (760)
|.+|+..-++..++.+.. ...|..|+..+....+.+.|+..+.++++.+|++..+-..+|.++...|+|..|++.
T Consensus 157 W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~ 236 (389)
T COG2956 157 WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA 236 (389)
T ss_pred HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH
Confidence 888888888777776643 344666777777777888888888888888888888888888888888888888888
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004339 288 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 367 (760)
Q Consensus 288 ~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 367 (760)
++.+++.+|.-.+.+...|..+ |... |+....+.++.++....+. +.+...++.+.....-.+.|.
T Consensus 237 ~e~v~eQn~~yl~evl~~L~~~-Y~~l------------g~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq 302 (389)
T COG2956 237 LERVLEQNPEYLSEVLEMLYEC-YAQL------------GKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQ 302 (389)
T ss_pred HHHHHHhChHHHHHHHHHHHHH-HHHh------------CCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHH
Confidence 8888877776555666666666 7777 7777777777777776654 333444455545555566677
Q ss_pred HHHHHHHHHhc
Q 004339 368 DLFTQVQEAAS 378 (760)
Q Consensus 368 ~~~~~al~~~p 378 (760)
.++.+-+...|
T Consensus 303 ~~l~~Ql~r~P 313 (389)
T COG2956 303 AYLTRQLRRKP 313 (389)
T ss_pred HHHHHHHhhCC
Confidence 77766666666
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.71 E-value=3.4e-14 Score=151.16 Aligned_cols=323 Identities=16% Similarity=0.068 Sum_probs=185.9
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
+|+++.++..+|..+...|++..|...+.++....|.+ .+..+..|.++...|+++.|+.++++++..+|.+..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56666666666666666666666666666666655533 344555666666666666666666666666665553332
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 87 DLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 87 ~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
. +..++..|.+..+...+.+++..
T Consensus 82 --------------------------------------~-~~~~~~~~~~~~~~~~~~~~l~~----------------- 105 (355)
T cd05804 82 --------------------------------------L-HLGAFGLGDFSGMRDHVARVLPL----------------- 105 (355)
T ss_pred --------------------------------------H-hHHHHHhcccccCchhHHHHHhc-----------------
Confidence 2 33333333333333333333220
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 246 (760)
.....|....++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 106 ----------------------~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 106 ----------------------WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred ----------------------cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 1125566777778888888889999999999999999889888888888999999999
Q ss_pred HHHHHHHHHHHHHHcCCChH----HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHH-HHHHHHHHHHHhhhhcC
Q 004339 247 LQLSIELVNEALKVNGKYPN----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL-SLGNWNYFAALRNEKRA 321 (760)
Q Consensus 247 ~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~lg~~~y~~~~~~~~~~ 321 (760)
+++|+.++.+++...|..+. .+..++.++...|++++|+..|.+++...+........ ..+.. +.... ....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~-~~g~- 240 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASL-LWRLE-LAGH- 240 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHH-HHHHH-hcCC-
Confidence 99999999988888764332 45678889999999999999998887654421222111 11111 11110 0000
Q ss_pred chHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC----CCCCCchHHHHHHHHHHH
Q 004339 322 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG----SVFVQMPDVWINLAHVYF 397 (760)
Q Consensus 322 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~la~~~~ 397 (760)
......++............ +.........+.++...|+...|...+..+...... ........+....|.+++
T Consensus 241 -~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 241 -VDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred -CChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 00001111111111110000 112222234566666667777777666665543321 000012444555666666
Q ss_pred HcCCHHHHHHHHHHHHhh
Q 004339 398 AQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~ 415 (760)
..|++..|+..+..++..
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666666654
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.70 E-value=5e-14 Score=149.88 Aligned_cols=313 Identities=14% Similarity=0.017 Sum_probs=222.3
Q ss_pred CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhh
Q 004339 78 DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 78 ~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
+|+++.++..+|.++. .+++..+...+.++....|... ...+..+..+.++...|+++.|+..+.+++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~-------- 71 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA--TERERAHVEALSAWIAGDLPKALALLEQLLD-------- 71 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 4666666666666555 4556666666666665555431 1246677788889999999999999999987
Q ss_pred cccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCcHH
Q 004339 157 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI----HDTVAASVLYRLILFKYQDYVD 232 (760)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~ 232 (760)
..|.+..++.. +..+... +....+...+......+|....
T Consensus 72 -----------------------------------~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (355)
T cd05804 72 -----------------------------------DYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWY 115 (355)
T ss_pred -----------------------------------HCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHH
Confidence 44555555543 4444444 4444444444444456677888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCC---hHHHHHHHHH
Q 004339 233 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD---SYATLSLGNW 309 (760)
Q Consensus 233 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~lg~~ 309 (760)
++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++.+++...|... ...+..++.+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999876421 2345678888
Q ss_pred HHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC--CHHHHH---HHHHHHHHcCChHHHHHH--H-HHHHHHhcCCC
Q 004339 310 NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAAN---GAGVVLAEKGQFDVSKDL--F-TQVQEAASGSV 381 (760)
Q Consensus 310 ~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~---~la~~~~~~g~~~~A~~~--~-~~al~~~p~~~ 381 (760)
+... |+++.|+.+|++++...|. .....+ .+...+...|....+..+ + .......|.
T Consensus 196 -~~~~------------G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-- 260 (355)
T cd05804 196 -YLER------------GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-- 260 (355)
T ss_pred -HHHC------------CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc--
Confidence 8888 9999999999999877662 222221 223333345544444433 1 111111121
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC---CC----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 382 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY---NT----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 382 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
+.........+.++...|+...|...+..+...... .. ...+....+.+++..|++..|+..+..++.+.
T Consensus 261 -~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 261 -HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred -ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 123344457889999999999999999988775322 11 26777889999999999999999999999765
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.68 E-value=2.2e-13 Score=146.47 Aligned_cols=318 Identities=16% Similarity=0.190 Sum_probs=212.3
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
...++..+.++...|++++|+.++......-++...++-..|.++..+|++++|...|..+|..+|++...+..+..++.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 45678889999999999999999999988888899999999999999999999999999999999999999999999873
Q ss_pred -c-----CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 94 -S-----SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES-AHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 94 -~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
. .+...-...|.......|... +...+...+..-..|.. +..++...+..+.. +........+ -+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~------~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP-slF~~lk~Ly-~d 155 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSD------APRRLPLDFLEGDEFKERLDEYLRPQLRKGVP-SLFSNLKPLY-KD 155 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCcccc------chhHhhcccCCHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHH-cC
Confidence 2 246777888888888777642 11122222222223332 33344444443310 0000000000 01
Q ss_pred hhhHHH-HHHhHHhhhhhhccCCCc------cCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 004339 167 ASASML-QFKDMQLFHRFENDGNHV------ELPWNK-VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 238 (760)
Q Consensus 167 ~~~~~~-~~~~~~~~~~l~~~~~~~------~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 238 (760)
.....+ .-....+...+....... ..+|.. .++++.+|..|...|++++|+.++.++|...|..++.|+..|
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Ka 235 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKA 235 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 111111 101111222222211111 112222 356677888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhh
Q 004339 239 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 318 (760)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~ 318 (760)
.++...|++.+|..+++.+..+++.+-.+....+..+++.|+.++|...+........+ ...-+..+-
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~-~~~~L~~mQ----------- 303 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD-PLSNLNDMQ----------- 303 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC-cccCHHHHH-----------
Confidence 88888888888888888888888888888888888888888888888888766544321 111111111
Q ss_pred hcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 319 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 319 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
..+.....|.+|.+.|++..|+..|..+.....
T Consensus 304 ---------------------------c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 304 ---------------------------CMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred ---------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 123334467788888888888888888877653
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.3e-13 Score=128.20 Aligned_cols=373 Identities=14% Similarity=0.146 Sum_probs=248.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHh
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTG 98 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~ 98 (760)
....+++..+|..|+.++..-.+.+|.+...+..||.||+...+|..|..+|++.-.+.|......+..+..+. .+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 33445888899999999999999999999999999999999999999999999999999998888888888766 67888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHH
Q 004339 99 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 178 (760)
Q Consensus 99 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (760)
.|+......... |.. ...++-.-+.+.+..+++..+....++.-.
T Consensus 96 DALrV~~~~~D~-~~L----~~~~lqLqaAIkYse~Dl~g~rsLveQlp~------------------------------ 140 (459)
T KOG4340|consen 96 DALRVAFLLLDN-PAL----HSRVLQLQAAIKYSEGDLPGSRSLVEQLPS------------------------------ 140 (459)
T ss_pred HHHHHHHHhcCC-HHH----HHHHHHHHHHHhcccccCcchHHHHHhccC------------------------------
Confidence 888776655432 111 134444455566666666666666555321
Q ss_pred hhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 179 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258 (760)
Q Consensus 179 ~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 258 (760)
.+.+....+.|.+.++.|+++.|++-|+.+++...-.+..-++++.++++.+++..|+.+...++
T Consensus 141 ---------------en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 141 ---------------ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred ---------------CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 24556677777788888888888888888887777777777778888888888888887776665
Q ss_pred HH----cCC----------------C---------hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC-CCChHHHHHHHH
Q 004339 259 KV----NGK----------------Y---------PNALSMLGDLELKNDDWVKAKETFRAASDATD-GKDSYATLSLGN 308 (760)
Q Consensus 259 ~~----~p~----------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~lg~ 308 (760)
.. +|. + ..++...+-++++.++++.|...+..+--... .-++..+.+++.
T Consensus 206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred HhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 43 332 1 12455666777888888888776654432211 124555555554
Q ss_pred HHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC------
Q 004339 309 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF------ 382 (760)
Q Consensus 309 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------ 382 (760)
. -. .+++.....-+.-.+.++|--...+-++-.+|++..-|+-|..++-. +|..++
T Consensus 286 ~-n~-------------~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk~L~~Y 347 (459)
T KOG4340|consen 286 M-NM-------------DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYKFLTPY 347 (459)
T ss_pred h-cc-------------cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHHHhhHH
Confidence 3 11 15566666666667777776666777777777777777766655432 110000
Q ss_pred -----------CCchHH-HHHH---------------HHHHHHcC-----CHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 004339 383 -----------VQMPDV-WINL---------------AHVYFAQG-----NFALAMKMYQNCLRKFYYNTDAQILLYLAR 430 (760)
Q Consensus 383 -----------~~~~~~-~~~l---------------a~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 430 (760)
+.+|.. .-.| +.+..... ....|++.|+.++.++ ..++...++
T Consensus 348 ly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-----LPVlMa~Ak 422 (459)
T KOG4340|consen 348 LYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY-----LPVLMAQAK 422 (459)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 011110 0000 11111111 1334555566666643 557778888
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 431 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 431 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+|+...+|..+.+.|+..++...++.....|.|.+
T Consensus 423 iyW~~~Dy~~vEk~Fr~SvefC~ehd~WkLNvaHv 457 (459)
T KOG4340|consen 423 IYWNLEDYPMVEKIFRKSVEFCNDHDVWKLNVAHV 457 (459)
T ss_pred hhccccccHHHHHHHHHHHhhhcccceeeeccccc
Confidence 99999999999999999998888887777777655
No 89
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.66 E-value=8.5e-12 Score=129.39 Aligned_cols=409 Identities=16% Similarity=0.160 Sum_probs=261.4
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
+..|+...+.++.+|+...-...|.++|..-|- +..+|-.........+-+.-++..|++.++++|....-++. .+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie--~L 179 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIE--YL 179 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHH--HH
Confidence 456777888888999999999999999987774 45566666666667777788888888888888876443322 12
Q ss_pred HccCCHhHHHHHHHHHHHH------------------------HHhcCC----------------CCCHHHHHHHHHHHH
Q 004339 92 LISSDTGAALDAFKTARTL------------------------LKKAGE----------------EVPIEVLNNIGVIHF 131 (760)
Q Consensus 92 ~~~~~~~~A~~~~~~al~~------------------------~~~~~~----------------~~~~~~~~~la~~~~ 131 (760)
...++.++|...|...+.. +|+... .....+|..||..|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 2234555555544443311 111110 012567899999999
Q ss_pred HcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcC
Q 004339 132 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 211 (760)
Q Consensus 132 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g 211 (760)
+.|.++.|..+|++++..-.......... .....|........+...............+-..++..-.-+.
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~if--------d~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIF--------DAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHH--------HHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 99999999999999987422111000000 0111111111111111000000011122233333333332222
Q ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HcCCC-----hHHHHHHHHHHhhcCCHHHHH
Q 004339 212 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK-VNGKY-----PNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 212 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A~ 285 (760)
....- +=.-++..+|+++..|.....+ ..|+..+-+..|..++. .+|.. ..+|..+|.+|...|+.+.|.
T Consensus 332 rr~~~--lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 332 RRPLL--LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred ccchH--HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 22211 1123456678888887776555 46777788888887775 35542 347888899999999999999
Q ss_pred HHHHHhhhcCCCC---ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC------------------
Q 004339 286 ETFRAASDATDGK---DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT------------------ 344 (760)
Q Consensus 286 ~~~~~al~~~~~~---~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------------ 344 (760)
.+|.+++...-.. ...+|...|.. -+.. .+++.|+.+.+.+...-.
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waem-Elrh------------~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEM-ELRH------------ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHH-HHhh------------hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 9999888764221 23455555555 4444 788888888888765311
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHH
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 424 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 424 (760)
.+..+|..++.+....|-++....+|.+++.+.- -.|.+..|.|..+....-+++|.+.|++.+.+|+-|.-.++
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLri-----aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~di 549 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-----ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDI 549 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHH
Confidence 1344677788888889999999999999998875 67899999999999999999999999999999877777666
Q ss_pred HHHHHHH---HHHhccHHHHHHHHHHHHHhCCC
Q 004339 425 LLYLART---HYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 425 ~~~la~~---~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
|...-.. -+.--..+.|..+|++|+...|.
T Consensus 550 W~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 6533222 23344678899999999998883
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.9e-12 Score=133.33 Aligned_cols=387 Identities=16% Similarity=0.113 Sum_probs=249.6
Q ss_pred hhhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 3 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 3 a~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
+.+.+...|++..++.....++++.+.|+.|+...+.-......+ ...+..+.|.++++..++|+..+. ..++.+.
T Consensus 35 ~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~ 110 (652)
T KOG2376|consen 35 ANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDD 110 (652)
T ss_pred HHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccch
Confidence 456667778888899999999999999999985444332211112 223688889999999999998888 4556666
Q ss_pred HHHHHHHHHHc-cCCHhHHHHHHHHHHHHH---------------------------HhcCCCCCHHHHHHHHHHHHHcC
Q 004339 83 QAFIDLGELLI-SSDTGAALDAFKTARTLL---------------------------KKAGEEVPIEVLNNIGVIHFEKG 134 (760)
Q Consensus 83 ~~~~~la~~~~-~~~~~~A~~~~~~al~~~---------------------------~~~~~~~~~~~~~~la~~~~~~g 134 (760)
......|+++. .++|++|+..|+..++-. |.. .....+.+++.|.++...|
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v-~e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV-PEDSYELLYNTACILIENG 189 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC-CcchHHHHHHHHHHHHhcc
Confidence 67777777655 789999999888764321 111 1224678999999999999
Q ss_pred CHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCC-ccCCcchHHHHHHHHHHHHHcCCH
Q 004339 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH-VELPWNKVTVLFNLARLLEQIHDT 213 (760)
Q Consensus 135 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~p~~~~~~~~la~~~~~~g~~ 213 (760)
+|.+|++.+..++.+|... +..-... -........+...++.++..+|+.
T Consensus 190 ky~qA~elL~kA~~~~~e~-----------------------------l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 190 KYNQAIELLEKALRICREK-----------------------------LEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred cHHHHHHHHHHHHHHHHHh-----------------------------hcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999998765310 0000000 001112345788899999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHH----HHHHHH---------------------------------------------HHHc
Q 004339 214 VAASVLYRLILFKYQDYVDAY----LRLAAI---------------------------------------------AKAR 244 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~~~~~----~~la~~---------------------------------------------~~~~ 244 (760)
.+|..+|..++..+|.+.... .+|..+ .+..
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998876543221 111111 0111
Q ss_pred CCHHHHHHHHHHHHHHcCCChH---HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcC
Q 004339 245 NNLQLSIELVNEALKVNGKYPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA 321 (760)
Q Consensus 245 g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~ 321 (760)
+.-+.+.+. ...+-+..|. -.............+..|..++.......|.....+.+.++.+ .+..
T Consensus 321 nk~~q~r~~---~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl-~is~------- 389 (652)
T KOG2376|consen 321 NKMDQVREL---SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQL-KISQ------- 389 (652)
T ss_pred hhHHHHHHH---HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHH-HHhc-------
Confidence 111111111 1111112222 1112222222333577888888887777777556677777777 6666
Q ss_pred chHHhhcHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC--CCCchHHHHH
Q 004339 322 PKLEATHLEKAKELYTRVI--------VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV--FVQMPDVWIN 391 (760)
Q Consensus 322 ~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~ 391 (760)
|++..|+..+...+ ... ..+.+...+-.++...++-+-|..++..++....... .+..-..+..
T Consensus 390 -----gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 390 -----GNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred -----CCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 99999999998333 221 2344444555666777777778888888876543110 0123456677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHH
Q 004339 392 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 443 (760)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 443 (760)
++.+-.+.|+-.+|...|+..++. +|++..++..+..+|... +.+.|..
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 788888889999999999999995 788888888887776543 3444443
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.60 E-value=6e-14 Score=139.56 Aligned_cols=189 Identities=16% Similarity=0.120 Sum_probs=149.5
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH--
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ-- 83 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 83 (760)
.++..+..++.+|..++..|+|+.|+..|++++..+|.++ .+++.+|.++...|+++.|+..|++++..+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4566778899999999999999999999999999999875 68899999999999999999999999999998775
Q ss_pred -HHHHHHHHHc-c--------CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchh
Q 004339 84 -AFIDLGELLI-S--------SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 153 (760)
Q Consensus 84 -~~~~la~~~~-~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 153 (760)
+++.+|.++. . +++..|+..|.+++...|.+ ...+..+..+.. +..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~a~~~~~~--------------~~~----- 163 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-----EYAPDAKKRMDY--------------LRN----- 163 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-----hhHHHHHHHHHH--------------HHH-----
Confidence 6888888876 3 57888999999999888875 233221111100 000
Q ss_pred hhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---c
Q 004339 154 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---Y 230 (760)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~ 230 (760)
......+.+|.+|...|++..|+..|..++...|+ .
T Consensus 164 -----------------------------------------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (235)
T TIGR03302 164 -----------------------------------------RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPAT 202 (235)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch
Confidence 01123457788888899999999999999988665 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 231 VDAYLRLAAIAKARNNLQLSIELVNEALKVNG 262 (760)
Q Consensus 231 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 262 (760)
+.+++.+|.++...|++++|+.++..+...+|
T Consensus 203 ~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 203 EEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57888999999999999999988888776665
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.58 E-value=5.9e-13 Score=132.42 Aligned_cols=200 Identities=13% Similarity=0.105 Sum_probs=127.2
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH--
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV---DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-- 266 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 266 (760)
.++..+..++.+|..+...|+++.|+..|++++..+|.++ .+++.+|.++...|++++|+..|++++..+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4556778999999999999999999999999999998765 57899999999999999999999999999998776
Q ss_pred -HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC
Q 004339 267 -ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 267 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 345 (760)
+++.+|.++.... +.+ +... |++..|+..|++++..+|.
T Consensus 108 ~a~~~~g~~~~~~~---------------------------~~~-~~~~------------~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 108 YAYYLRGLSNYNQI---------------------------DRV-DRDQ------------TAAREAFEAFQELIRRYPN 147 (235)
T ss_pred HHHHHHHHHHHHhc---------------------------ccc-cCCH------------HHHHHHHHHHHHHHHHCCC
Confidence 6788888876540 001 1112 4555555555555555555
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CCcHHH
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-NTDAQI 424 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~ 424 (760)
+..++..+..+.... . ........+|.+|+..|++.+|+..|..++..+++ |..+.+
T Consensus 148 ~~~~~~a~~~~~~~~--------------~--------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a 205 (235)
T TIGR03302 148 SEYAPDAKKRMDYLR--------------N--------RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEA 205 (235)
T ss_pred ChhHHHHHHHHHHHH--------------H--------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHH
Confidence 544332221111100 0 00112234555555555555555555555555543 233555
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 425 LLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 425 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
++.+|.++..+|++++|..+++......|
T Consensus 206 ~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 206 LARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55555555555555555555555544443
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.55 E-value=1.2e-13 Score=124.47 Aligned_cols=128 Identities=10% Similarity=0.075 Sum_probs=119.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
..+|++++..+|++ +..+|.++...|++++|+.+|..++..+| .++.+|.++|.++...|++++|+..|.++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQP-----WSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46789999999875 55789999999999999999999999999 88999999999999999999999999999
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 413 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+.. .|.++.+++.+|.++..+|++++|+..|.+++.+.|+++..+.+++.+...+.
T Consensus 85 l~l--~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 85 LML--DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred Hhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 996 78899999999999999999999999999999999999999999998865543
No 94
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.54 E-value=2.7e-13 Score=133.03 Aligned_cols=300 Identities=17% Similarity=0.158 Sum_probs=186.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHH
Q 004339 55 GHIYVQLGQIEKAQELLRKAAKIDPRDA----QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGV 128 (760)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~ 128 (760)
|.-++++|++...+.+|+.+++....+. ..|..||.+|. .++|.+|+++...-+.+....++.. .+...-+||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3344455555555555555555544332 23444555554 4555555555444443332222111 2455677888
Q ss_pred HHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHH
Q 004339 129 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 208 (760)
Q Consensus 129 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~ 208 (760)
.+...|.|++|+.++.+-+.+.. . +...-....++|++|.+|.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~ar------------------------------e-------LgDrv~e~RAlYNlgnvYh 146 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFAR------------------------------E-------LGDRVLESRALYNLGNVYH 146 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHH------------------------------H-------HhHHHhhhHHHhhhhhhhh
Confidence 88888999999888887765311 0 0011134568888888888
Q ss_pred HcCC--------------------HHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 209 QIHD--------------------TVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 262 (760)
Q Consensus 209 ~~g~--------------------~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 262 (760)
..|+ ++.|.++|..-+++... ...++-+||..|+-+|+|+.|+..-+.-+.+..
T Consensus 147 akGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ 226 (639)
T KOG1130|consen 147 AKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQ 226 (639)
T ss_pred hcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHH
Confidence 7664 34555666655544321 234567788888999999999988777666543
Q ss_pred CC------hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC-----CCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHH
Q 004339 263 KY------PNALSMLGDLELKNDDWVKAKETFRAASDAT-----DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 331 (760)
Q Consensus 263 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 331 (760)
.. -.++.++|++|.-.|+++.|+++|+..+.+. ........+.||+. |... ..+.+
T Consensus 227 efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt-ytll------------~e~~k 293 (639)
T KOG1130|consen 227 EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT-YTLL------------KEVQK 293 (639)
T ss_pred HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH-HHHH------------HHHHH
Confidence 22 2378899999999999999999998876532 12245667888888 8887 88888
Q ss_pred HHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHcCCHHH
Q 004339 332 AKELYTRVIVQHT------SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 332 A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~la~~~~~~g~~~~ 404 (760)
|+.++.+-+.+.. ....+++.||..+...|..++|+.+....+++...... .....+..++.......|..+.
T Consensus 294 AI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 294 AITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 8888888665532 23457777788888888888887777776665421100 0123455566666666665443
No 95
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.54 E-value=2.2e-10 Score=119.11 Aligned_cols=385 Identities=10% Similarity=0.131 Sum_probs=278.8
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHH-----HHHHHhcC-------------CHHHHHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKAL-----GHIYVQLG-------------QIEKAQELLR 72 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l-----a~~~~~~g-------------~~~~A~~~~~ 72 (760)
...|..||..|++.|.|+.|..+|++++..--. ...++-.. ..+...++ +.+-.+..|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 346888999999999999999999999875322 11111111 11111111 2333444555
Q ss_pred HHH------------hcCCCcHHHHHHHHHHHccCCHhHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004339 73 KAA------------KIDPRDAQAFIDLGELLISSDTGAALDAFKTART-LLKKAGEEVPIEVLNNIGVIHFEKGEFESA 139 (760)
Q Consensus 73 ~al------------~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 139 (760)
.++ ..+|++...|.....++ .|+..+-+..|..|+. .+|......+..+|..+|.+|...|+.+.|
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~-e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY-EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhh-cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 544 44777887777765544 5678888888888775 456654445678999999999999999999
Q ss_pred HHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 140 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 219 (760)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 219 (760)
..+|+++...+- ..-.+...+|...|..-....+++.|+.+
T Consensus 407 Rvifeka~~V~y---------------------------------------~~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 407 RVIFEKATKVPY---------------------------------------KTVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred HHHHHHhhcCCc---------------------------------------cchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999987321 01123467899999999999999999999
Q ss_pred HHHHHHHcC------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCH
Q 004339 220 YRLILFKYQ------------------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 281 (760)
Q Consensus 220 ~~~~l~~~p------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 281 (760)
.+.+..... ....+|..++.+....|-++....+|++++.+.--.|.+..+.|.++....-+
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf 527 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF 527 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH
Confidence 999875321 12346777888888999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCChH-HHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHH
Q 004339 282 VKAKETFRAASDATDGKDSY-ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL--YAANGAGVVLA 358 (760)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~-~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~ 358 (760)
+++.+.|++.+.+.+.+..+ .|...-.- +... . ....++.|..+|++++...|... ..+..+|.+-.
T Consensus 528 eesFk~YErgI~LFk~p~v~diW~tYLtk-fi~r--y-------gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWPNVYDIWNTYLTK-FIKR--Y-------GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHHHHHHcCCccCCCccHHHHHHHHHHH-HHHH--h-------cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999988654332 33322211 2111 0 01578999999999999988422 24555666666
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG----NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 434 (760)
..|-...|+.+|+++-...+ ..-.+.+-.+|+..- -...-..+|++|+...++..-.......+..-.+
T Consensus 598 e~GLar~amsiyerat~~v~-------~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtk 670 (835)
T KOG2047|consen 598 EHGLARHAMSIYERATSAVK-------EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETK 670 (835)
T ss_pred HhhHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhh
Confidence 88999999999999876543 222233333333211 1445678899999987666668888889999999
Q ss_pred hccHHHHHHHHHHHHHhCCCC
Q 004339 435 AEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 435 ~g~~~~A~~~~~~al~~~p~~ 455 (760)
+|..+.|..+|.-+-++.|..
T Consensus 671 lGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 671 LGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred hhhHHHHHHHHHhhhhcCCCc
Confidence 999999999999998886543
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.52 E-value=3e-12 Score=143.54 Aligned_cols=266 Identities=11% Similarity=0.014 Sum_probs=187.4
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
..+|.+..++..++..|...+++++|+.+++.++..+|+...+|+.+|.++++.+++..|... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~----- 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL----- 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-----
Confidence 467888888899999888999999999999988998999989999999988888886666555 4444433322
Q ss_pred HHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 88 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 88 la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
++ .++.++...+...+.+ ..+++.+|.||-.+|++++|...|++++.
T Consensus 98 --------~~-~~ve~~~~~i~~~~~~-----k~Al~~LA~~Ydk~g~~~ka~~~yer~L~------------------- 144 (906)
T PRK14720 98 --------KW-AIVEHICDKILLYGEN-----KLALRTLAEAYAKLNENKKLKGVWERLVK------------------- 144 (906)
T ss_pred --------ch-hHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHcCChHHHHHHHHHHHh-------------------
Confidence 33 4445555455545554 56888888888888888888888888887
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 247 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 247 (760)
.+|.++.++.++|..|... ++++|+.++.+++.. +...+++
T Consensus 145 ------------------------~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~ 185 (906)
T PRK14720 145 ------------------------ADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQY 185 (906)
T ss_pred ------------------------cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcc
Confidence 5678888888888888888 888888888888765 5566677
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhh
Q 004339 248 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327 (760)
Q Consensus 248 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 327 (760)
..+..+..+.+..+|.+...+..+-......-.+..+... +.-+-.. |... +
T Consensus 186 ~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~---------------~~~l~~~-y~~~------------~ 237 (906)
T PRK14720 186 VGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGL---------------LEDLYEP-YKAL------------E 237 (906)
T ss_pred hHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHH---------------HHHHHHH-Hhhh------------h
Confidence 8888888888888887766544333222221112222221 2222223 4444 7
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------------------CChHHHHHHHHHHHHHhcCC
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK--------------------GQFDVSKDLFTQVQEAASGS 380 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------------g~~~~A~~~~~~al~~~p~~ 380 (760)
+|+.++.+++.++..+|.|..+...++.||... ..+..|+..|.+.+...+|+
T Consensus 238 ~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred hhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCC
Confidence 777888888888888888887777777777631 24577788888888777754
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=8.5e-11 Score=116.36 Aligned_cols=294 Identities=13% Similarity=0.064 Sum_probs=172.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 004339 55 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133 (760)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 133 (760)
|..-+..|+|.+|.....+.-+..+.-..++..-+.+-. .|+++.|-.++.++-+..++. ...+....+.+....
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~----~l~v~ltrarlll~~ 166 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD----TLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc----hHHHHHHHHHHHHhC
Confidence 333344455555555555544444433333333333333 445555555555555442222 134445555555556
Q ss_pred CCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCH
Q 004339 134 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 213 (760)
Q Consensus 134 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 213 (760)
|++..|.....+++. ..|.++.++....++|...|+|
T Consensus 167 ~d~~aA~~~v~~ll~-------------------------------------------~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 167 RDYPAARENVDQLLE-------------------------------------------MTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred CCchhHHHHHHHHHH-------------------------------------------hCcCChHHHHHHHHHHHHhccH
Confidence 666666665555554 3445555555556666666666
Q ss_pred HHHHHHHHHHHHHcCCcHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 214 VAASVLYRLILFKYQDYVDA--------YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~~~~--------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
.....++.++-+..--+..- |..+-.-...-+..+.-..+.+..-..-.+++.+...++.-+...|.++.|.
T Consensus 204 ~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~ 283 (400)
T COG3071 204 QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQ 283 (400)
T ss_pred HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHH
Confidence 66555555554433211111 1111110111111111112333332333456777778888888888888888
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 004339 286 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365 (760)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 365 (760)
.....+++..-+.. ....++. ... ++...-++..++.++.+|+++..+..||.+|.+.+.|.+
T Consensus 284 ~~i~~~Lk~~~D~~--L~~~~~~---l~~------------~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 284 EIIEDALKRQWDPR--LCRLIPR---LRP------------GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHHHHHHhccChh--HHHHHhh---cCC------------CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH
Confidence 88888887654322 1111111 112 677777888888888899999888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004339 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 366 A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 418 (760)
|..+|+.++...| +...+..+|.++..+|+...|...++.++..+..
T Consensus 347 A~~~leaAl~~~~------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 347 ASEALEAALKLRP------SASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHHhcCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 9999998888875 4777888899999999999999998888866533
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.50 E-value=5.9e-11 Score=142.61 Aligned_cols=390 Identities=13% Similarity=0.058 Sum_probs=270.1
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHc
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA-KIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~ 93 (760)
..+...+..+...|++..|+.++..+-.. +.-...+...+..+...|.+..+..++..+- .....++......+.++.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 34556677788889999888766554211 1113445556777778888887777665431 011123334455566655
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcC---C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhh
Q 004339 94 -SSDTGAALDAFKTARTLLKKAG---E-EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~---~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 168 (760)
.+++..|...+..+....+... . .....+...++.++...|+++.|..++..++...+.
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---------------- 484 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---------------- 484 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------------
Confidence 7899999999998876644321 0 112455667888999999999999999998762110
Q ss_pred hHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHH
Q 004339 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAK 242 (760)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~ 242 (760)
...+....++..+|.++...|+++.|..++.+++..... ...++..+|.++.
T Consensus 485 ----------------------~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 485 ----------------------TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 001112345678899999999999999999999865331 1345678899999
Q ss_pred HcCCHHHHHHHHHHHHHHcCC--------ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC----ChHHHHHHHHHH
Q 004339 243 ARNNLQLSIELVNEALKVNGK--------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGK----DSYATLSLGNWN 310 (760)
Q Consensus 243 ~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~lg~~~ 310 (760)
..|++..|..++.+++..... ...++..+|.++...|+++.|...+..++...... ....+..++.+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~- 621 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI- 621 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH-
Confidence 999999999999999876321 12345678889999999999999999988753321 23344456666
Q ss_pred HHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC---HHHHH----HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC
Q 004339 311 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN---LYAAN----GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 383 (760)
Q Consensus 311 y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 383 (760)
+... |++..|...+..+..+.+.. ..... .....+...|+.+.|..++.......+....
T Consensus 622 ~~~~------------G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~- 688 (903)
T PRK04841 622 SLAR------------GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH- 688 (903)
T ss_pred HHHc------------CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch-
Confidence 6666 99999999999987753321 11111 1224445688999999887776542221100
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
.....+..+|.++...|++.+|+..|.+++........ ..++..+|.++...|+..+|...+.+|+.+......
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 11223578999999999999999999999986432222 567889999999999999999999999999865543
No 99
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.49 E-value=3.1e-12 Score=143.33 Aligned_cols=280 Identities=13% Similarity=0.116 Sum_probs=197.2
Q ss_pred cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 191 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 191 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
..+|.+..++..|+..+...+++++|+.++...+..+|+.+..|+.+|.++...+++..+..+ .++...+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~-------- 94 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS-------- 94 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc--------
Confidence 477889999999999999999999999999999999999999999999999999997776655 4444433
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHH
Q 004339 271 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 350 (760)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 350 (760)
...+| .++.++...+...+. +.++++.+|.+ |-.. |+.++|...|+++++.+|+++.++
T Consensus 95 ------~~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aL 153 (906)
T PRK14720 95 ------QNLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIV 153 (906)
T ss_pred ------cccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHH
Confidence 33445 444444444444444 66799999999 9999 999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+++|..|... ++++|+.++.+|+...-.. .+.....+| ...|...-.+++.=..+.++.+.......-..++.-+=
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W--~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIW--SKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHH--HHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 9999999999 9999999999998764210 000011111 12222222333333344444433322222255555666
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH-HhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhc
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS-ASTLQKTRRTADEVRSTVAELENAVRVFSHLSAA 504 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~ 504 (760)
.+|...++|++++.+|+.++.++|.|..+++.++.||...= ...+-...-.+..+..--..+..|+.-|+.+..-
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f 306 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVF 306 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeee
Confidence 88999999999999999999999999999999999986321 1111111111122222334566777777766543
No 100
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2.1e-11 Score=113.04 Aligned_cols=209 Identities=18% Similarity=0.067 Sum_probs=168.6
Q ss_pred CHhHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 96 DTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
+.++-++++...+...+.. ..+....++-.+..+....|+..-|..+++++..
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~-------------------------- 80 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD-------------------------- 80 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH--------------------------
Confidence 5556666666665554443 1111234455556667778999999999988765
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 254 (760)
..|.+..+....|..+...|++++|+++|...+..+|.+..++.+...+...+|+.-+|+..+
T Consensus 81 -----------------~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~l 143 (289)
T KOG3060|consen 81 -----------------RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKEL 143 (289)
T ss_pred -----------------hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHH
Confidence 347788888889999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHH
Q 004339 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 334 (760)
Q Consensus 255 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 334 (760)
...++.++.++++|..++.+|+..|+|.+|.-+++.++-+.|. .+..+..++.+ ++.... ..++.-|..
T Consensus 144 n~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~-~Yt~gg---------~eN~~~ark 212 (289)
T KOG3060|consen 144 NEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEV-LYTQGG---------AENLELARK 212 (289)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHH-HHHHhh---------HHHHHHHHH
Confidence 9999999999999999999999999999999999999988887 77777888888 443311 157888999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 004339 335 LYTRVIVQHTSNLYAANGAGVVLA 358 (760)
Q Consensus 335 ~~~~al~~~p~~~~~~~~la~~~~ 358 (760)
+|.++++++|.+..+++++..+..
T Consensus 213 yy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHhChHhHHHHHHHHHHHH
Confidence 999999999988888888766654
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.48 E-value=2.8e-12 Score=122.04 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=116.3
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH-HHcCC--HH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY-FAQGN--FA 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~-~~~g~--~~ 403 (760)
+..++++..+++++..+|+++.+|..+|.+|...|+++.|+..|.+++.+.| +++.++..+|.++ ...|+ +.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 7788999999999999999999999999999999999999999999999999 8899999999975 67787 59
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
+|...+++++.. +|.++.+++.+|.+++..|++++|+.+|++++.+.|.+..
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999996 8888999999999999999999999999999999988754
No 102
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1e-10 Score=108.51 Aligned_cols=185 Identities=15% Similarity=0.139 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 265 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
..++-.+..+.+..|+..-|..+++......|+ ...+...-|.. +-.. |++++|+++|...+.-+|
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~-lEa~------------~~~~~A~e~y~~lL~ddp 117 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAML-LEAT------------GNYKEAIEYYESLLEDDP 117 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHH-HHHh------------hchhhHHHHHHHHhccCc
Confidence 334444555555666666666666666666655 44443344444 4444 777777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHH
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 424 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 424 (760)
.+..++-....+...+|+.-+|+..+...++..+ .++++|..++.+|+..|+|.+|.-+|+.++-. .|.++..
T Consensus 118 t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-----~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~ 190 (289)
T KOG3060|consen 118 TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-----NDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLY 190 (289)
T ss_pred chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHH
Confidence 7777777666677778888888888888888887 77888888888888888888888888888774 7777888
Q ss_pred HHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 425 LLYLARTHYEAE---QWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 425 ~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+..+|.+++-+| ++.-|.++|.++++++|.+...+|.+.+|-+.+.
T Consensus 191 f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 191 FQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 888888888766 4556999999999999998889988888765554
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=1.3e-10 Score=139.76 Aligned_cols=353 Identities=14% Similarity=0.045 Sum_probs=249.0
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------cHHHHH
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLE-IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---------DAQAFI 86 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~ 86 (760)
....|..+...|.+..+..++..+-. ....++.....++.++...|++.+|..++..+....+. ......
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 44566677778888877776655311 11234556677888889999999999999988754221 123344
Q ss_pred HHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhh
Q 004339 87 DLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 165 (760)
Q Consensus 87 ~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 165 (760)
.++.++. .|++..|...+..++...+.........++..+|.++...|+++.|...+.+++.....
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~------------- 523 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ------------- 523 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-------------
Confidence 4566666 78999999999999986544211112345678899999999999999999999863210
Q ss_pred hhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC--------CcHHHHHHH
Q 004339 166 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRL 237 (760)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~l 237 (760)
.........++..+|.++...|+++.|..++.+++.... ....++..+
T Consensus 524 ------------------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 524 ------------------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred ------------------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 001112235678899999999999999999999887522 123345678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCC-----ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCC-hHHH-HH---HH
Q 004339 238 AAIAKARNNLQLSIELVNEALKVNGK-----YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD-SYAT-LS---LG 307 (760)
Q Consensus 238 a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~-~~---lg 307 (760)
|.++...|++++|...+.+++..... ...++..++.++...|++..|...+..+..+..... ...+ .. +.
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 88999999999999999999876332 234566789999999999999999999877533211 1111 11 11
Q ss_pred HHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-C
Q 004339 308 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-F 382 (760)
Q Consensus 308 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~ 382 (760)
...+... |+.+.|..++.......+.... .+..+|.++...|++.+|...|.+++....... .
T Consensus 660 ~~~~~~~------------g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~ 727 (903)
T PRK04841 660 LIYWQMT------------GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLM 727 (903)
T ss_pred HHHHHHC------------CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch
Confidence 1112233 8888888888776543322222 256789999999999999999999998753211 1
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004339 383 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 383 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 418 (760)
.....++..+|.++...|+..+|...+.+++..+..
T Consensus 728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 133567889999999999999999999999998643
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.47 E-value=6e-13 Score=119.93 Aligned_cols=121 Identities=18% Similarity=0.194 Sum_probs=108.2
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+++..+|++ ++.+|.++...|++++|+.+|.+++..+|.++.+|+.+|.++...|++.+|+..|.+++.++|.++.+
T Consensus 18 ~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a 94 (144)
T PRK15359 18 QLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEP 94 (144)
T ss_pred HHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 456677774 66789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 133 (760)
++.+|.++. .|++.+|+..|.+++.+.|.+ +..+.++|.+....
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~-----~~~~~~~~~~~~~l 139 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYAD-----ASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHH
Confidence 999999988 789999999999999999987 78887777766543
No 105
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.46 E-value=6.2e-13 Score=130.58 Aligned_cols=273 Identities=14% Similarity=0.046 Sum_probs=201.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~ 205 (760)
-|.-+++.|++...+.+|+.+++.+.. .-.....+|..||.
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTe---------------------------------------Dl~tLSAIYsQLGN 63 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTE---------------------------------------DLSTLSAIYSQLGN 63 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcch---------------------------------------HHHHHHHHHHHhcc
Confidence 367788999999999999999985420 11123457889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC------CChHHHHHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKY------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG------KYPNALSMLGD 273 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~ 273 (760)
+|+.+++|.+|+++-..-+.+. -....+.-+||.++...|.|++|+.++.+-+.+.. ....+++++|.
T Consensus 64 AyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgn 143 (639)
T KOG1130|consen 64 AYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGN 143 (639)
T ss_pred hhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhh
Confidence 9999999999998765433221 23344567899999999999999999888776542 23458999999
Q ss_pred HHhhcCC--------------------HHHHHHHHHHhhhcCCC-----CChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 274 LELKNDD--------------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 274 ~~~~~g~--------------------~~~A~~~~~~al~~~~~-----~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
+|...|. +..|.++|..-+++... ....++-+||+. |+.. |+
T Consensus 144 vYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNT-yYlL------------Gd 210 (639)
T KOG1130|consen 144 VYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNT-YYLL------------GD 210 (639)
T ss_pred hhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCce-eeee------------cc
Confidence 9987764 23455555554443221 023455678888 8777 99
Q ss_pred HHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHHcC
Q 004339 329 LEKAKELYTRVIVQHTS------NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQG 400 (760)
Q Consensus 329 ~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~la~~~~~~g 400 (760)
|+.|+.+-+.-+.+... .-.++.++|.++.-.|+++.|+++|+..+.+.- +... ..+...+.||..|.-..
T Consensus 211 f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~-vEAQscYSLgNtytll~ 289 (639)
T KOG1130|consen 211 FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT-VEAQSCYSLGNTYTLLK 289 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh-HHHHHHHHhhhHHHHHH
Confidence 99999988877665432 234788999999999999999999998776542 1100 23567889999999999
Q ss_pred CHHHHHHHHHHHHhhhcC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 401 NFALAMKMYQNCLRKFYY----NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 401 ~~~~A~~~~~~al~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
.+..||.++.+-+.+... .....+++.||.+|-.+|...+|+.+.++.+++
T Consensus 290 e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 290 EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999987776422 233778889999999999999999888887765
No 106
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=2e-09 Score=106.78 Aligned_cols=303 Identities=16% Similarity=0.141 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
....+-|..-+.-|+|.+|.....+.-+ ..+.....+
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae-------------------------------------------~~e~p~l~~ 121 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAE-------------------------------------------HGEQPVLAY 121 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhh-------------------------------------------cCcchHHHH
Confidence 3444456666678999999999988755 233344566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
..-+.+-...|+++.|-.++.++-+..+ +...+.+.++.++...|++..|...+..++...|.++.++.....+|...|
T Consensus 122 l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g 201 (400)
T COG3071 122 LLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLG 201 (400)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhc
Confidence 6677888899999999999999998843 456778899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
+|.....++.++-+..--.+.. +..+-+..+...+ ....+. +..+.-..+++..-..--+++.....++.-+..
T Consensus 202 ~~~~ll~~l~~L~ka~~l~~~e-~~~le~~a~~glL-~q~~~~----~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 202 AWQALLAILPKLRKAGLLSDEE-AARLEQQAWEGLL-QQARDD----NGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred cHHHHHHHHHHHHHccCCChHH-HHHHHHHHHHHHH-HHHhcc----ccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 9999999998887754332222 1122222022111 111111 122222334444433344567788888999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHH
Q 004339 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ 439 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 439 (760)
+|..++|..+...+++.. -++.....++ ...-+++..=++..++.++. .|.++.+++.||..|++.+.|.
T Consensus 276 l~~~~~A~~~i~~~Lk~~------~D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQ------WDPRLCRLIP--RLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred cCChHHHHHHHHHHHHhc------cChhHHHHHh--hcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHH
Confidence 999999999999999876 3455222222 34557888888888888885 6777899999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHH
Q 004339 440 DCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAV 495 (760)
Q Consensus 440 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~ 495 (760)
+|..+|+.|+...|+. ..+..+|.++..+| +...|.....+++
T Consensus 346 kA~~~leaAl~~~~s~-~~~~~la~~~~~~g------------~~~~A~~~r~e~L 388 (400)
T COG3071 346 KASEALEAALKLRPSA-SDYAELADALDQLG------------EPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhcCCCh-hhHHHHHHHHHHcC------------ChHHHHHHHHHHH
Confidence 9999999999888754 45666777777766 5555666666666
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.43 E-value=1.2e-11 Score=130.82 Aligned_cols=236 Identities=17% Similarity=0.115 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
......++.++...|-...|+..|++. ..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl---------------------------------------------------em 426 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL---------------------------------------------------EM 426 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH---------------------------------------------------HH
Confidence 345566777777788777777777654 35
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
|-....||...|+..+|..+..+-++ .|..+..|..+|.+....--|++|.++.+.. +..+...+|......+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccch
Confidence 55667777777877777777777777 5666677777777766665556665555443 3346667777777777
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
+|.++..+|+..+.++|- ....|+.+|.+ +.+. +++..|..+|..++.+.|++..+|++++..|..
T Consensus 500 ~fs~~~~hle~sl~~npl-q~~~wf~~G~~-ALql------------ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPL-QLGTWFGLGCA-ALQL------------EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred hHHHHHHHHHHHhhcCcc-chhHHHhccHH-HHHH------------hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 888888888888888776 77778888887 7777 788888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 004339 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 432 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 432 (760)
.|+-.+|...+..+++.+- .+..+|.|.-.+....|.+++|++.|.+.+.......+..++..+....
T Consensus 566 ~~~k~ra~~~l~EAlKcn~-----~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNY-----QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HhhhHHHHHHHHHHhhcCC-----CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 8888888888888887764 6677788888888888888888888888777644444555555444443
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=4e-10 Score=106.64 Aligned_cols=186 Identities=14% Similarity=0.106 Sum_probs=157.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 004339 59 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 137 (760)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 137 (760)
.+-.+|..|++++..-.+.+|.+...+..||.||. ..+|..|..+|.+.-.+.|.. ....+..+..++..+.+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-----~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-----EQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-----HHHHHHHHHHHHHhcccH
Confidence 56678999999999999999999999999999998 679999999999999999986 677778899999999999
Q ss_pred HHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHH
Q 004339 138 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 217 (760)
Q Consensus 138 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 217 (760)
.|+.+...+... +.-....+..-+-+.+..+++..+.
T Consensus 96 DALrV~~~~~D~-------------------------------------------~~L~~~~lqLqaAIkYse~Dl~g~r 132 (459)
T KOG4340|consen 96 DALRVAFLLLDN-------------------------------------------PALHSRVLQLQAAIKYSEGDLPGSR 132 (459)
T ss_pred HHHHHHHHhcCC-------------------------------------------HHHHHHHHHHHHHHhcccccCcchH
Confidence 999998877541 1112344555566777778888877
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 218 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 218 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
.+.++.- ..+.....++.|.+.++.|+++.|++-|+.+++...-++.+-+.++.+++..+++..|+.+...++..
T Consensus 133 sLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 133 SLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 7666532 12577889999999999999999999999999999999999999999999999999999999888774
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.42 E-value=2.3e-11 Score=114.21 Aligned_cols=177 Identities=15% Similarity=0.121 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcH
Q 004339 250 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 329 (760)
Q Consensus 250 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~ 329 (760)
+...+-.....+|.+..+ ..++..+...|+-+.+..+..++....+. +...+..+|.. .+.. |++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~-~~~~------------g~~ 116 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKN-QIRN------------GNF 116 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHH-HHHh------------cch
Confidence 555555666677888888 78888888888888888888777766665 77777667777 7777 889
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 330 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 409 (760)
Q Consensus 330 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (760)
..|+..+.++....|++..+|+.+|.+|.+.|+++.|...|.+++++.| ..+.+..|+|..|+-.|++..|..++
T Consensus 117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-----~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-----NEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred HHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-----CCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 77888999999999999999999998
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 410 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 410 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
..+... .+.+..+..+|+.+....|++..|..+..+-
T Consensus 192 l~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 192 LPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 888873 4557888889999999999998888776543
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.42 E-value=6.8e-11 Score=125.09 Aligned_cols=223 Identities=19% Similarity=0.206 Sum_probs=195.5
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
|........+|..++..|-...|+..|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 334556778999999999999999999985 5677889999999999999999999998 6778888888888
Q ss_pred HHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhH
Q 004339 91 LLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 170 (760)
Q Consensus 91 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 170 (760)
+...- .+|+++..+.... ...+...+|...+..++|.++..+|+..+.
T Consensus 466 v~~d~------s~yEkawElsn~~----sarA~r~~~~~~~~~~~fs~~~~hle~sl~---------------------- 513 (777)
T KOG1128|consen 466 VLHDP------SLYEKAWELSNYI----SARAQRSLALLILSNKDFSEADKHLERSLE---------------------- 513 (777)
T ss_pred hccCh------HHHHHHHHHhhhh----hHHHHHhhccccccchhHHHHHHHHHHHhh----------------------
Confidence 76632 3455555544432 255667788888889999999999999988
Q ss_pred HHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHH
Q 004339 171 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 250 (760)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 250 (760)
.+|.....||.+|.+..+.+++..|...|..++...|++..+|.+++..|...++-.+|
T Consensus 514 ---------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 514 ---------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred ---------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHH
Confidence 66788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q 004339 251 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 295 (760)
Q Consensus 251 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (760)
...+.++++.+-.++.+|-+...+....|.+++|+..|.+.+.+.
T Consensus 573 ~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 573 FRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998864
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.39 E-value=2.6e-11 Score=115.39 Aligned_cols=153 Identities=12% Similarity=0.131 Sum_probs=112.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCH
Q 004339 202 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 281 (760)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 281 (760)
.-+..|+..|++.......+... +|.. -+...++.++++..+.+++..+|+++..|..+|.+|...|++
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Confidence 34556778888877655443221 1211 111256667888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 282 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH--LEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
+.|+..|.+++.+.|. ++..+..+|.+.|+.. |+ +.+|..++++++..+|+++.+++.+|.++..
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~------------g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQA------------GQHMTPQTREMIDKALALDANEVTALMLLASDAFM 156 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc------------CCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 8888888888888877 7777777777523555 55 4788888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHHhc
Q 004339 360 KGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p 378 (760)
.|++++|+.+|+++++..|
T Consensus 157 ~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 157 QADYAQAIELWQKVLDLNS 175 (198)
T ss_pred cCCHHHHHHHHHHHHhhCC
Confidence 8888888888888888777
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.37 E-value=1.8e-11 Score=109.96 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=112.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 334 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 334 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
..|.+++..+|.+..+.+.+|.++...|++.+|+..|+.++...| .++.++..+|.++..+|++++|+.+|++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-----YNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999999999999999998 889999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 414 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 414 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
.. .|.++.+++.+|.+|...|+++.|+.+|++++++.|++....
T Consensus 79 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 79 AL--DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 96 678899999999999999999999999999999999886644
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.36 E-value=9.7e-11 Score=110.10 Aligned_cols=179 Identities=19% Similarity=0.189 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q 004339 216 ASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 295 (760)
Q Consensus 216 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (760)
+...+-.....+|.+..+ ..++..+...|+-+.++.+..++...+|.+..++..+|...+..|++..|+..|.++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 555556666678999998 9999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004339 296 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 375 (760)
Q Consensus 296 ~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 375 (760)
|+ ++.+|..+|.+ |.+. |+++.|...|.+++++.|+.+.+++++|..|.-.|++..|..++..+..
T Consensus 131 p~-d~~~~~~lgaa-ldq~------------Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 131 PT-DWEAWNLLGAA-LDQL------------GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred CC-ChhhhhHHHHH-HHHc------------cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98 99999999999 9999 9999999999999999999999999999999999999999999999998
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 376 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 376 ~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
..+ .+..+..+++.+...+|++..|..+-.+-+.
T Consensus 197 ~~~-----ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 197 SPA-----ADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred CCC-----CchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 776 7889999999999999999999887665444
No 114
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.33 E-value=3.6e-11 Score=121.07 Aligned_cols=236 Identities=12% Similarity=0.091 Sum_probs=177.9
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCChHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLG 272 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 272 (760)
......+.+.+++..+|++...+.-+.. ..+....+...++..+...+.-+.++..+...+... +.++.+....|
T Consensus 33 ~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 33 NKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 4566788899999999998876654433 223344556666666655556666766665554332 23455677778
Q ss_pred HHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHH
Q 004339 273 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 352 (760)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 352 (760)
.++...|+++.|+..+... ...........+ |+.. ++++.|...++.+.+.+.+...+...
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi-~L~~------------~R~dlA~k~l~~~~~~~eD~~l~qLa 170 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQI-LLKM------------NRPDLAEKELKNMQQIDEDSILTQLA 170 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHH-HHHT------------T-HHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 8899999999999888754 255555556666 7777 99999999999999998887777777
Q ss_pred HHHHHHHcC--ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 004339 353 AGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 430 (760)
Q Consensus 353 la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 430 (760)
.+++....| .+.+|..+|+.+....| .++.++..+|.+++.+|+|++|...+..++.. +|.++.++.+++.
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~-----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv 243 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFG-----STPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS-------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHH
Confidence 777777766 69999999999876655 67899999999999999999999999999985 7888999999999
Q ss_pred HHHHhccH-HHHHHHHHHHHHhCCCChhHH
Q 004339 431 THYEAEQW-QDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 431 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~ 459 (760)
+...+|+. +.+.+++.+....+|+++.+.
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99999998 667788888888999887654
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.27 E-value=7.3e-10 Score=124.05 Aligned_cols=144 Identities=10% Similarity=0.021 Sum_probs=94.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
..|..+.++++||.+....|.+++|..++..++...|++..++..++.++.+.+++++|+..+++++...|+++.+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHH
Q 004339 272 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 349 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 349 (760)
|.++...|++++|+.+|++++...|. ...+++.+|.+ +... |+.+.|...|++++.....-...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~-l~~~------------G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQS-LTRR------------GALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhhCcchHH
Confidence 66666666666666666666664443 56666666666 5555 66666666666666655443333
No 116
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.27 E-value=7.9e-11 Score=118.59 Aligned_cols=258 Identities=13% Similarity=0.117 Sum_probs=154.4
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 85 FIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 85 ~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
++.+-..|..|+|..++..+. .....+.. .......+.++|..+|++...+.-+...
T Consensus 5 Lf~vrn~fy~G~Y~~~i~e~~-~~~~~~~~----~~e~~~~~~Rs~iAlg~~~~vl~ei~~~------------------ 61 (290)
T PF04733_consen 5 LFTVRNQFYLGNYQQCINEAS-LKSFSPEN----KLERDFYQYRSYIALGQYDSVLSEIKKS------------------ 61 (290)
T ss_dssp THHHHHHHCTT-HHHHCHHHH-CHTSTCHH----HHHHHHHHHHHHHHTT-HHHHHHHS-TT------------------
T ss_pred HHHHHHHHHhhhHHHHHHHhh-ccCCCchh----HHHHHHHHHHHHHHcCChhHHHHHhccC------------------
Confidence 344445566777777776555 22222221 2456667777788888776555433211
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY--QDYVDAYLRLAAIAK 242 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~ 242 (760)
. +....+...++..+...+..+.++..+...+... +.+....+..|.++.
T Consensus 62 ---------------------------~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 62 ---------------------------S-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp ---------------------------S-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred ---------------------------C-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 1 1123344555555544455555655555444222 134445556666777
Q ss_pred HcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCc
Q 004339 243 ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP 322 (760)
Q Consensus 243 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~ 322 (760)
..|++++|+.++... .+.++......+|+..++++.|.+.++.+...... . ++..++.. |.......
T Consensus 114 ~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD-~--~l~qLa~a-wv~l~~g~---- 180 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED-S--ILTQLAEA-WVNLATGG---- 180 (290)
T ss_dssp CCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC-H--HHHHHHHH-HHHHHHTT----
T ss_pred HcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-H--HHHHHHHH-HHHHHhCc----
Confidence 778888777776543 45677777777888888888888888777665433 2 23333333 22221100
Q ss_pred hHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 323 KLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 323 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
..+..|.-+|+......|.++..++++|.++..+|+|++|...+..++..+| .++.++.+++.+...+|+.
T Consensus 181 ----e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-----~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 181 ----EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-----NDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp ----TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-----CHHHHHHHHHHHHHHTT-T
T ss_pred ----hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhCCC
Confidence 3578888888887777777888888888888888888888888888887777 7788888888888888877
Q ss_pred -HHHHHHHHHHHhh
Q 004339 403 -ALAMKMYQNCLRK 415 (760)
Q Consensus 403 -~~A~~~~~~al~~ 415 (760)
+.+.+++.+....
T Consensus 252 ~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 252 TEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHCHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 4445555555543
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.27 E-value=7.2e-11 Score=106.08 Aligned_cols=110 Identities=22% Similarity=0.270 Sum_probs=101.0
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+++..+|.++.+.+.+|..++..|++.+|+..|++++..+|.++.++..+|.++...|++..|+.+|.+++..+|.++..
T Consensus 8 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 87 (135)
T TIGR02552 8 DLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRP 87 (135)
T ss_pred HHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 56778898888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
++.+|.++. .|++..|+..|+.++.+.|..
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 88 YFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 999999988 789999999999999998875
No 118
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=7.8e-11 Score=112.78 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+-.-|.-+...++|.+|+..|.+||.++| .++..|.+.|.+|.++|.|+.|++.++.++.. +|....+|..||
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P-----~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG 156 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDP-----TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCC-----CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHH
Confidence 44557778888999999999999999999 88999999999999999999999999999995 788899999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.+|+.+|++.+|+..|++||+++|++...+-+|..+-+++.
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888765554
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.25 E-value=7.3e-11 Score=103.74 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=72.5
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
++.....|.+|..++..|++++|...|+-+...+|.++..|++||.|+..+|+|.+|+..|.+++.++|+++.+++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHc-cCCHhHHHHHHHHHHHHH
Q 004339 91 LLI-SSDTGAALDAFKTARTLL 111 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~ 111 (760)
|+. .|+...|...|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 766 567777777777766655
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.24 E-value=6.7e-10 Score=124.38 Aligned_cols=159 Identities=7% Similarity=-0.043 Sum_probs=144.4
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.+....+...+-+++.+..... ..+.++.+||.+....|.+++|..++..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------------- 114 (694)
T PRK15179 62 HAAVHKPAAALPELLDYVRRYP--HTELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------------- 114 (694)
T ss_pred hhhhcchHhhHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-------------------------
Confidence 4456666666666666655542 2378999999999999999999999999998
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 253 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 253 (760)
..|++..++.+++.++.+.+++++|+..+++++...|++..+++.+|.++...|++++|+.+
T Consensus 115 ------------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 115 ------------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred ------------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 254 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 254 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
|++++..+|+++.++..+|.++...|+.++|...|.+++.....
T Consensus 177 y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 177 FERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999998654
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1e-10 Score=112.03 Aligned_cols=118 Identities=22% Similarity=0.272 Sum_probs=106.4
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI- 93 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 93 (760)
..+-.-|.-++..++|.+|+..|.+||.++|.++..|.+.|.+|.++|.+..|++.++.++.++|.+..+|..||.+|.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 3466778889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 137 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 137 (760)
+|++.+|+..|++++.++|.+ ...+.+|..+-..++...
T Consensus 162 ~gk~~~A~~aykKaLeldP~N-----e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDN-----ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCc-----HHHHHHHHHHHHHhcCCC
Confidence 889999999999999999997 666677766665555544
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.21 E-value=4.6e-10 Score=98.78 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=46.6
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
|+++.|..+|+-+..++|.+...|++||.|+..+|+|.+|+..|..++.+.| ++|..++++|.|++..|+.+.|.
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-----ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-----DAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555555555555555555555555555555555555555 45555555555555555555555
Q ss_pred HHHHHHHhhh
Q 004339 407 KMYQNCLRKF 416 (760)
Q Consensus 407 ~~~~~al~~~ 416 (760)
..|+.++..+
T Consensus 124 ~aF~~Ai~~~ 133 (157)
T PRK15363 124 KALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 123
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.16 E-value=1.8e-08 Score=99.16 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=139.8
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH---HH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY---LRLAAIAKARNNLQLSIELVNEALKVNGKYPN---AL 268 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~ 268 (760)
..+..++..|..+...|+|+.|+..|+.++..+|....+. +.+|.+++..+++..|+..+++++..+|+++. ++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3567788899999999999999999999999998776554 88899999999999999999999999887754 66
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 269 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
+.+|.++...+. ..+.....+... .... .....|+..|+..+...|++..
T Consensus 110 Y~~g~~~~~~~~-----~~~~~~~~~~~~-------------~rD~------------~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 110 YMRGLTNMALDD-----SALQGFFGVDRS-------------DRDP------------QHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred HHHHHhhhhcch-----hhhhhccCCCcc-------------ccCH------------HHHHHHHHHHHHHHHHCcCChh
Confidence 677766543321 111111111110 0111 4456777888888888887755
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLY 427 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~ 427 (760)
+ .+|...+..+.. ....--+.+|..|++.|.|..|+.-++.++..+|..+. .++++.
T Consensus 160 a--------------~~A~~rl~~l~~--------~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~ 217 (243)
T PRK10866 160 T--------------TDATKRLVFLKD--------RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPL 217 (243)
T ss_pred H--------------HHHHHHHHHHHH--------HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 2 222222222211 12333457788888888888888888888888766554 788888
Q ss_pred HHHHHHHhccHHHHHHHHHH
Q 004339 428 LARTHYEAEQWQDCKKSLLR 447 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~ 447 (760)
++.+|..+|..+.|..+...
T Consensus 218 l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 218 MENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCChHHHHHHHHH
Confidence 88888888888888776654
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=2.6e-08 Score=101.79 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=98.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHH
Q 004339 228 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 307 (760)
Q Consensus 228 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg 307 (760)
|....+++..+..++..|.++.|+..+..++...|+|+..+...+.+++..++..+|.+.+++++...|. .....+++|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHH
Confidence 5566666666767777777777777777766667776666666666666666666666666666666665 356666666
Q ss_pred HHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchH
Q 004339 308 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 387 (760)
Q Consensus 308 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 387 (760)
+. |+.. |++.+|+..++..+..+|+++..|..||..|..+|+.. .
T Consensus 382 ~a-ll~~------------g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~----------------------~ 426 (484)
T COG4783 382 QA-LLKG------------GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA----------------------E 426 (484)
T ss_pred HH-HHhc------------CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH----------------------H
Confidence 66 6666 66666666666666666666666666666666666433 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 388 VWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
+....|..|+..|++++|+..+..+.+.
T Consensus 427 a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 427 ALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3334455555566666666666666654
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=3.9e-09 Score=107.70 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=119.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHH
Q 004339 44 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEV 122 (760)
Q Consensus 44 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 122 (760)
.|....+++..+..++..|+++.|+..+..++...|+|+..+...+.++. .++..+|.+.+++++.+.|.. ..+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-----~~l 376 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-----PLL 376 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-----cHH
Confidence 36777788888888888888888888888888888888888888888877 678888888888888888875 677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHH
Q 004339 123 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 202 (760)
Q Consensus 123 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 202 (760)
+.++|.+|+..|++.+|+..+...+. .+|.++..|..
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~-------------------------------------------~~p~dp~~w~~ 413 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLF-------------------------------------------NDPEDPNGWDL 413 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh-------------------------------------------cCCCCchHHHH
Confidence 88888888888888888888887765 56778888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 203 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 261 (760)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 261 (760)
||..|..+|+..+| ....+..|...|++++|+..+..+.+..
T Consensus 414 LAqay~~~g~~~~a-----------------~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 414 LAQAYAELGNRAEA-----------------LLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHhCchHHH-----------------HHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 88888888875554 3445566667777777777777777665
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.10 E-value=1.7e-09 Score=113.26 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=104.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+...|..++..|+|..|+.+|.+++...| .++.+|+++|.+|..+|++++|+..+++++.+ .|.++.+++.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P-----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg 77 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDP-----NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence 44568888899999999999999999999 88999999999999999999999999999997 677899999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.+|+.+|+++.|+.+|++++.++|+++.+...++.|...+.
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888866553
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.10 E-value=1.9e-08 Score=96.62 Aligned_cols=188 Identities=20% Similarity=0.223 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH---HHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 269 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 269 (760)
.+..++..|..++..|+|.+|+..|+.++...|. ...+.+.+|.+++..|++..|+..++..+..+|+++. +++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 4566777777777777777777777777777664 3456777777777777777777777777777776543 555
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHH
Q 004339 270 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 349 (760)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 349 (760)
.+|.+++.... ..+ . . .... +....|+..|+..+...|++..+
T Consensus 84 ~~g~~~~~~~~-----~~~-------~------------~-~~D~------------~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 84 MLGLSYYKQIP-----GIL-------R------------S-DRDQ------------TSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp HHHHHHHHHHH-----HHH--------------------T-T---------------HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred HHHHHHHHhCc-----cch-------h------------c-ccCh------------HHHHHHHHHHHHHHHHCcCchHH
Confidence 55554433210 000 0 0 1111 67788999999999999987654
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 428 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 428 (760)
- +|...+..+... ...--+.+|..|+..|.|..|+..|+.++..+|+++. ..++..+
T Consensus 127 ~--------------~A~~~l~~l~~~--------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 127 E--------------EAKKRLAELRNR--------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp H--------------HHHHHHHHHHHH--------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHH--------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 2 233323222221 2344467899999999999999999999998766655 6888999
Q ss_pred HHHHHHhccHHHHH
Q 004339 429 ARTHYEAEQWQDCK 442 (760)
Q Consensus 429 a~~~~~~g~~~~A~ 442 (760)
+.+|.++|....|.
T Consensus 185 ~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 185 AEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHTT-HHHHH
T ss_pred HHHHHHhCChHHHH
Confidence 99999999988544
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.09 E-value=1.1e-08 Score=100.66 Aligned_cols=171 Identities=15% Similarity=0.129 Sum_probs=138.9
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET---LKALGHIYVQLGQIEKAQELLRKAAKIDPRD---AQAFI 86 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 86 (760)
.+..+|..|..++..|+|+.|+..|+.++...|..+.+ .+.+|.+|++.+++..|+..|++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 56678999999999999999999999999999998654 5899999999999999999999999999876 45678
Q ss_pred HHHHHHc-cC---------------C---HhHHHHHHHHHHHHHHhcCCCC------------CHHHHHHHHHHHHHcCC
Q 004339 87 DLGELLI-SS---------------D---TGAALDAFKTARTLLKKAGEEV------------PIEVLNNIGVIHFEKGE 135 (760)
Q Consensus 87 ~la~~~~-~~---------------~---~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~la~~~~~~g~ 135 (760)
.+|.++. .+ + ...|+..|+..+...|++.-.. ...--+.+|..|++.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 8887642 11 2 3468899999999988763110 11222456888999999
Q ss_pred HHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHH
Q 004339 136 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVA 215 (760)
Q Consensus 136 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 215 (760)
|..|+.-|+.++...| ..|....+++.++..|..+|..+.
T Consensus 191 y~AA~~r~~~v~~~Yp----------------------------------------~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 191 YVAVVNRVEQMLRDYP----------------------------------------DTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred hHHHHHHHHHHHHHCC----------------------------------------CCchHHHHHHHHHHHHHHcCChHH
Confidence 9999999999998554 455677899999999999999999
Q ss_pred HHHHHHHH
Q 004339 216 ASVLYRLI 223 (760)
Q Consensus 216 A~~~~~~~ 223 (760)
|..+...+
T Consensus 231 a~~~~~~l 238 (243)
T PRK10866 231 ADKVAKII 238 (243)
T ss_pred HHHHHHHH
Confidence 98876554
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.08 E-value=1.6e-09 Score=113.39 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=105.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
+...|..++..|+|..|+.+|.+++..+|.++.+++.+|.+|..+|++..|+..+.+++.++|.++.+++.+|.++. .|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999988 89
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 133 (760)
++..|+..|++++.+.|.+ ..+...++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~-----~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGD-----SRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHH
Confidence 9999999999999999987 77777777775555
No 130
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.06 E-value=3.2e-08 Score=95.11 Aligned_cols=173 Identities=21% Similarity=0.235 Sum_probs=115.4
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA---QAFI 86 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 86 (760)
.+..+|..|..++..|+|.+|+..|+.++...|.. +.+++.+|.+++..|++..|+..|++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46688999999999999999999999999998875 68899999999999999999999999999998864 4666
Q ss_pred HHHHHHc-cC-----------CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhh
Q 004339 87 DLGELLI-SS-----------DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 154 (760)
Q Consensus 87 ~la~~~~-~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 154 (760)
.+|.++. .. ....|+..|+..+...|++. -...|...+..+-
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~-------------------y~~~A~~~l~~l~------- 137 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE-------------------YAEEAKKRLAELR------- 137 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST-------------------THHHHHHHHHHHH-------
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch-------------------HHHHHHHHHHHHH-------
Confidence 6666643 10 12344444444444444431 1111111111111
Q ss_pred hhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH---
Q 004339 155 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV--- 231 (760)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--- 231 (760)
.....--+.+|..|.+.|.|..|+..|+.+++..|+..
T Consensus 138 ---------------------------------------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~ 178 (203)
T PF13525_consen 138 ---------------------------------------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAE 178 (203)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHH
Confidence 01223445678888888888888888888888888764
Q ss_pred HHHHHHHHHHHHcCCHHHH
Q 004339 232 DAYLRLAAIAKARNNLQLS 250 (760)
Q Consensus 232 ~~~~~la~~~~~~g~~~~A 250 (760)
.++..++.+|..+|....|
T Consensus 179 ~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 179 EALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHH
Confidence 4567777778888877643
No 131
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=6.9e-07 Score=95.85 Aligned_cols=221 Identities=17% Similarity=0.169 Sum_probs=138.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHH--------HHH---HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEK--------VLE---IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~--------al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+|-++|.++.+..+.+-|.-++-. +++ .+|+ +.-...|.+...+|.+++|..+|.+.-+.+
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D------ 830 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD------ 830 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH------
Confidence 577777777777766666555432 122 1333 233345666677788888888887765422
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
.|-.+|. .|.+++|++..+.--.+. .-..|++.|..+...++...|+.+|+++-.-.
T Consensus 831 --LlNKlyQs~g~w~eA~eiAE~~DRiH-------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha------------- 888 (1416)
T KOG3617|consen 831 --LLNKLYQSQGMWSEAFEIAETKDRIH-------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHA------------- 888 (1416)
T ss_pred --HHHHHHHhcccHHHHHHHHhhcccee-------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChH-------------
Confidence 2334454 566666665544321111 24678899999999999999999999874310
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCcc---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVE---LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 240 (760)
...++-+..+...++ ....+...|.+.|..+...|+.+.|+.+|..+-. |+.+..+
T Consensus 889 -------------fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI 947 (1416)
T KOG3617|consen 889 -------------FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRI 947 (1416)
T ss_pred -------------HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheee
Confidence 000011111000000 1123457888999999999999999999987643 5666666
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q 004339 241 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 292 (760)
Q Consensus 241 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (760)
..-+|+.++|-.+.++ ..+..+.+.+|..|...|++.+|+.+|.++-
T Consensus 948 ~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred EeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6777777777655433 3456677777777777777777777776553
No 132
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.8e-06 Score=92.74 Aligned_cols=333 Identities=18% Similarity=0.145 Sum_probs=188.8
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
-...|...+..|-.++|..+|.+.-+ +-.|-.+|...|.+++|.++.+.-=+++ -...|++.+.-+. .+
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhc
Confidence 45667788899999999999998754 3456678888999999988776533332 2345777777776 77
Q ss_pred CHhHHHHHHHHHH----------HHHHhcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccc
Q 004339 96 DTGAALDAFKTAR----------TLLKKAG-----EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 160 (760)
Q Consensus 96 ~~~~A~~~~~~al----------~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 160 (760)
+...|+++|+++- .-+|..- ......+|...|..+...|..+.|+.+|..+-.... ......
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs---~VrI~C 949 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFS---MVRIKC 949 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhh---heeeEe
Confidence 9999999998742 1122110 111357788889999999999999999998865211 000000
Q ss_pred hhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc------CCcHHHH
Q 004339 161 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY------QDYVDAY 234 (760)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~ 234 (760)
...-+.. ..+ +.....+..+.|.+|+.|...|++.+|+..|.++-... ..+ +..
T Consensus 950 ~qGk~~k------------Aa~-------iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~ 1009 (1416)
T KOG3617|consen 950 IQGKTDK------------AAR-------IAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMK 1009 (1416)
T ss_pred eccCchH------------HHH-------HHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHH
Confidence 0000000 000 11234566788999999999999999999888765322 100 011
Q ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHH----------hhhcCCCCChHH
Q 004339 235 LRLAAIAKARNN--LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA----------ASDATDGKDSYA 302 (760)
Q Consensus 235 ~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------al~~~~~~~~~~ 302 (760)
-.|+.+....+. .-.|..+|+..- .....-..+|.+.|.+.+|++..-. +-.+.+..++..
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEELG-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHcc-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 122222222222 222333333221 0111122334445555555543221 112455667777
Q ss_pred HHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC--
Q 004339 303 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-- 380 (760)
Q Consensus 303 ~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 380 (760)
+..-+.+ +... .+|++|..++-.+-... -|.-++...+..-..+.-+ . ..|..
T Consensus 1083 l~RcadF-F~~~------------~qyekAV~lL~~ar~~~---------~AlqlC~~~nv~vtee~aE-~--mTp~Kd~ 1137 (1416)
T KOG3617|consen 1083 LRRCADF-FENN------------QQYEKAVNLLCLAREFS---------GALQLCKNRNVRVTEEFAE-L--MTPTKDD 1137 (1416)
T ss_pred HHHHHHH-HHhH------------HHHHHHHHHHHHHHHHH---------HHHHHHhcCCCchhHHHHH-h--cCcCcCC
Confidence 7777777 7666 77888877765543221 1111122222211111111 1 12211
Q ss_pred CCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 381 VFV--QMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 381 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
.++ ....++..+|.++.++|.|..|-+-|.+|-.
T Consensus 1138 ~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred CccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 111 1245778889999999999988888877644
No 133
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.00 E-value=8.6e-08 Score=93.56 Aligned_cols=285 Identities=16% Similarity=0.114 Sum_probs=178.6
Q ss_pred HccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHH
Q 004339 92 LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 171 (760)
Q Consensus 92 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 171 (760)
|...++..|+..|.+.+....+.- .....+-.+..++..+|.|.+++.+--..+....
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~--~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~-------------------- 74 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLM--GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR-------------------- 74 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHH--HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH--------------------
Confidence 335577777777777776554420 0123444556667777877777665544333100
Q ss_pred HHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHcCC
Q 004339 172 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-----VDAYLRLAAIAKARNN 246 (760)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~ 246 (760)
.. +.......++.++++.+...-++.+++.+-...+.+.... ..+...++..+..++.
T Consensus 75 ----------~~-------~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~ 137 (518)
T KOG1941|consen 75 ----------EL-------EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV 137 (518)
T ss_pred ----------HH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH
Confidence 00 0111234577888888888888888888777777543221 2345556777777777
Q ss_pred HHHHHHHHHHHHHHcCCCh------HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhc
Q 004339 247 LQLSIELVNEALKVNGKYP------NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 320 (760)
Q Consensus 247 ~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~ 320 (760)
++++++.|+.++....++. .++..||.++....++++|+-+..++..+... +.++.| ...
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s------~~l~d~-~~k------- 203 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS------YGLKDW-SLK------- 203 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh------cCcCch-hHH-------
Confidence 7777777777776543322 25666677777777777776666666554322 111111 000
Q ss_pred CchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHHHc
Q 004339 321 APKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMPDVWINLAHVYFAQ 399 (760)
Q Consensus 321 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~la~~~~~~ 399 (760)
....+++.++..+..+|..-.|.++.+.+.++.-. ...+........+|.+|...
T Consensus 204 ------------------------yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~ 259 (518)
T KOG1941|consen 204 ------------------------YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSR 259 (518)
T ss_pred ------------------------HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Confidence 01235667888888899999999998888776431 11113456677899999999
Q ss_pred CCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHH-----HHHHHHHHHHhCC
Q 004339 400 GNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQD-----CKKSLLRAIHLAP 453 (760)
Q Consensus 400 g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p 453 (760)
|+.+.|..-|+.|......-+| ..++...++++....-..+ |+++-.+++++..
T Consensus 260 gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 260 GDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred ccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 9999999999999886543344 6677777888776655555 8888777777653
No 134
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.98 E-value=1.2e-08 Score=89.26 Aligned_cols=111 Identities=21% Similarity=0.281 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-cHHHH
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-DAQIL 425 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~ 425 (760)
+.+++.+|..+...|++++|+..|.+++...|++. ..+.+++.+|.++...|+++.|+.+|+.++..++... .+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST--YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 35678899999999999999999999999988321 2367899999999999999999999999999765533 37889
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 426 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 426 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
+.+|.++..+|++.+|+.+|.+++...|++..+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 9999999999999999999999999999986543
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.98 E-value=9.4e-06 Score=88.89 Aligned_cols=230 Identities=13% Similarity=0.087 Sum_probs=142.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHH
Q 004339 24 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALD 102 (760)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~ 102 (760)
.+..++|.+|+..+.++++.+|+...+...-|.++.++|+.++|..+++..-...+++...+-.+-.||. .+++++|+.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 4567889999999999999999999999999999999999999998887777777778888888888888 789999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhc-ccchhhhhh-----hhhH--HHHH
Q 004339 103 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD-SKTKTYVID-----ASAS--MLQF 174 (760)
Q Consensus 103 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~-----~~~~--~~~~ 174 (760)
+|++++..+|. ...++.+-.+|.+-+.|.+-.+.--++.+..|..++.. ......+.. .... .+.+
T Consensus 99 ~Ye~~~~~~P~------eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 99 LYERANQKYPS------EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHhhCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999887 47777777788887777654444444433333211110 000000000 0000 0000
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHcC-CcHHHHHHHHHHHHHcCCHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL-ILFKYQ-DYVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
.. ..+..+.... . .-....-....-.++..+|.+++|...+.. .....+ .+..........+...+++.+-.+
T Consensus 173 A~-~m~~~~l~~~---g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 173 AE-KMVQKLLEKK---G-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred HH-HHHHHHhccC---C-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 00 0011110000 0 001111223334566677889999888843 333333 333333445566667777777777
Q ss_pred HHHHHHHHcCCC
Q 004339 253 LVNEALKVNGKY 264 (760)
Q Consensus 253 ~~~~al~~~p~~ 264 (760)
+..+++...+++
T Consensus 248 l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 248 LSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHhCCcc
Confidence 777777776665
No 136
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.97 E-value=1.8e-09 Score=83.91 Aligned_cols=67 Identities=40% Similarity=0.686 Sum_probs=60.2
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDP 79 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 79 (760)
++..|+.+|.+++..|+|++|+.+|.+++..+|+++.+|+.+|.++..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56788899999999999999999999999999999999999999999998 79999999999998887
No 137
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.96 E-value=5.5e-05 Score=78.41 Aligned_cols=428 Identities=10% Similarity=0.052 Sum_probs=246.5
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+.|..+|.++.+|+.+..-+..+ -++++...|++.+...|..+.+|...+...+..++|+.-..+|.+++..-- +.+.
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDL 88 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDL 88 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhH
Confidence 56889999999999999987777 999999999999999999999999999999999999999999999986432 3555
Q ss_pred HHHHHH-HHc-cCCHhHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhcccc
Q 004339 85 FIDLGE-LLI-SSDTGAALDAFKTARTLLKK--AGEEVPIEVLNNIGVIHFE---------KGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 85 ~~~la~-~~~-~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p 151 (760)
|..+-. +-. .++...+....-+|..+.-. .-+.....+|...+.++.. ..+.+.-...|++++....
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 544332 222 34433333333333322211 1112234566665555432 3466677788888886532
Q ss_pred h-hhhhcccchhhh--hhh--hhHHH------HHHhHHhhhhhhccCCCc-----cCCcc-------hHHHHHHHHHHHH
Q 004339 152 W-LTLLDSKTKTYV--IDA--SASML------QFKDMQLFHRFENDGNHV-----ELPWN-------KVTVLFNLARLLE 208 (760)
Q Consensus 152 ~-~~~~~~~~~~~~--~~~--~~~~~------~~~~~~~~~~l~~~~~~~-----~~~p~-------~~~~~~~la~~~~ 208 (760)
. ...+......+. ++. +...+ -...-..++.+....+-+ ..+|. ....|.++...-.
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 1 111111111110 000 00000 001111111111111111 11111 1122322222211
Q ss_pred HcC------C--HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHc-CCCh
Q 004339 209 QIH------D--TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN--------------LQLSIELVNEALKVN-GKYP 265 (760)
Q Consensus 209 ~~g------~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~-p~~~ 265 (760)
..+ . -..-.-.|++++..-+.++.+|+..+..+...++ .+++..+|+.++..- ..+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 0 1123345667776667777777776666655555 566677777766532 2233
Q ss_pred HHHHHHHHHHhhcC---CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 266 NALSMLGDLELKND---DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 266 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
.+++.++..-...- .++....++.+++.+.......+++.+-+. ..+. .-+..|..+|.++-+.
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~-irR~------------eGlkaaR~iF~kaR~~ 395 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNF-IRRA------------EGLKAARKIFKKARED 395 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHH-HHHh------------hhHHHHHHHHHHHhhc
Confidence 34444444332222 366666777777776554445555555554 4444 5567777888777554
Q ss_pred CCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-
Q 004339 343 HTSNLYAANGAGVV-LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT- 420 (760)
Q Consensus 343 ~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~- 420 (760)
.-....++..-|.+ |.-.++..-|..+|+-.+...+ +.+..-......+...++-..|..+|++++.. ..+.
T Consensus 396 ~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~-----d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ 469 (656)
T KOG1914|consen 396 KRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFG-----DSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSAD 469 (656)
T ss_pred cCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChh
Confidence 32222233222222 3356788888888888888887 67777777778888888888888888888885 1222
Q ss_pred -cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 421 -DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 421 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
...+|-..-..-..-|+...+++.=++-....|
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 256666666666667887777777766666666
No 138
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.95 E-value=1e-07 Score=96.97 Aligned_cols=110 Identities=15% Similarity=0.256 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC--c---
Q 004339 349 AANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT--D--- 421 (760)
Q Consensus 349 ~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~--- 421 (760)
++..+|.+|... |+++.|+.+|.+++.+...... .....++..+|.++...|+|++|+.+|+++...+...+ .
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344578888888 9999999999999998642211 12356788999999999999999999999988642222 1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
...++..+.|++..|++..|...|.+....+|.....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 3456788889999999999999999999999976443
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.93 E-value=2.6e-08 Score=90.27 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=98.5
Q ss_pred hcHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 004339 327 THLEKAKELYTRVIVQHTSN---LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 403 (760)
++...+...+..++..+|+. ..+.+.+|.+++..|++++|+..|..++...|... -.+.+.+.||.+++..|+|+
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~--l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE--LKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH--HHHHHHHHHHHHHHHcCCHH
Confidence 78888888899999999988 44677899999999999999999999999775211 22568889999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI 449 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 449 (760)
+|+..+..+.. .+..+.++..+|.+|...|++++|+..|++|+
T Consensus 103 ~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999976322 34457888899999999999999999999875
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.92 E-value=3.2e-08 Score=86.48 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
.+++.+|..+...|++++|+..|..++...| .++..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------------------------------------~~~~~~~~~ 42 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP----------------------------------------KSTYAPNAH 42 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------------------------------------CccccHHHH
Confidence 4566677777777777777777777665322 112234566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 268 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 268 (760)
+.+|.++...|+++.|+.+|..++..+|++ +.+++.+|.++...|++.+|+.++.+++...|+++.+.
T Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 43 YWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 677777777777777777777777666653 45667777777777777777777777777777665543
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.4e-08 Score=96.87 Aligned_cols=117 Identities=22% Similarity=0.328 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-c-C--CHhHHHHHHH
Q 004339 30 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-S-S--DTGAALDAFK 105 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~-~--~~~~A~~~~~ 105 (760)
.+.-+.-++..+..+|++++.|..||.+|+.+|++..|...|.+++++.|+++..+..+|.++. + | ...++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566777888889999999999999999999999999999999999999999999999999866 3 3 5789999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 106 TARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 106 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
+++.++|.+ +.+++.||..++..|+|.+|+..++.++...|
T Consensus 218 ~al~~D~~~-----iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 218 QALALDPAN-----IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHhcCCcc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999997 89999999999999999999999999998765
No 142
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.91 E-value=3.6e-07 Score=89.37 Aligned_cols=243 Identities=17% Similarity=0.137 Sum_probs=142.9
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------cHHHH
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------DAQAF 85 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 85 (760)
......|.-++...++.+|+..+.+.+..-.+.. ..+-.+..+...+|.|.+++.+--..+..... ...++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888899999998888887544332 23344455667777777776654443332111 13455
Q ss_pred HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 86 IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 86 ~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
.+++..+. .-++.+++.+-...+.+-..............+|..+..++.|++++..|+.++....
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~------------- 153 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH------------- 153 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh-------------
Confidence 56666655 3366666666655555432222233445666677777777777777777777765311
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC----c------HHHH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD----Y------VDAY 234 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~------~~~~ 234 (760)
......-...++..||.+|....++++|+-+..++..+... + ..+.
T Consensus 154 ------------------------~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 154 ------------------------NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred ------------------------ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 00011122356677777777777777777777776654321 1 2234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc------CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 235 LRLAAIAKARNNLQLSIELVNEALKVN------GKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 235 ~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
+.++..+..+|..-.|.++.+++.++. +-.......+|.+|...|+.+.|..-|+.+...
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 555666666666666666666665542 122234455666666666666666666655543
No 143
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.2e-08 Score=95.20 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=114.7
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC---CHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---NFA 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g---~~~ 403 (760)
...+..+.-++..+..+|+++.-|..||.+|...|++..|...|.+++.+.| +++.++..+|.+++.+. ...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-----~n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-----DNPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCcccH
Confidence 3456667777888999999999999999999999999999999999999999 89999999999988766 577
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
++..+|++++.. +|.++.+++.||..++..|+|.+|+..|+..+...|.+..-.
T Consensus 211 ~a~~ll~~al~~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 211 KARALLRQALAL--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 899999999996 899999999999999999999999999999999998775433
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.89 E-value=6.1e-08 Score=90.78 Aligned_cols=119 Identities=19% Similarity=0.149 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
...+++.+|.++...|++++|+.+|.+++...| ..+....
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------------------------------~~~~~~~ 73 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEE----------------------------------------DPNDRSY 73 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh----------------------------------------ccchHHH
Confidence 467788889999999999999999998886432 1222456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
+++.+|.++...|+++.|+.+|.+++...|.+..++..+|.++...|+...+...+..++.
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~------------------- 134 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA------------------- 134 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH-------------------
Confidence 8888999999999999999999999998998888888889888888886655544444432
Q ss_pred CCHHHHHHHHHHhhhcCCC
Q 004339 279 DDWVKAKETFRAASDATDG 297 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~ 297 (760)
.+..|+.++.+++...|.
T Consensus 135 -~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 135 -LFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred -HHHHHHHHHHHHHhhCch
Confidence 255666666666666554
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.89 E-value=1e-08 Score=79.53 Aligned_cols=67 Identities=19% Similarity=0.496 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCC
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE-QWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 453 (760)
++.+|..+|.+++..|+|++|+..|.+++.. +|.++.+++.+|.+|..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5789999999999999999999999999997 7889999999999999999 89999999999999998
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.89 E-value=6.5e-08 Score=90.56 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=102.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 268 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 268 (760)
..+....+++.+|.++...|++++|+.+|.+++...|+. ..++..+|.++...|++++|+.++.+++...|.++.++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 455667789999999999999999999999999877653 56899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC
Q 004339 269 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 346 (760)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 346 (760)
..+|.++...|+...+...+..++ ..+..|+.++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~----------------------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAE----------------------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHH----------------------------------HHHHHHHHHHHHHHhhCchh
Confidence 999999999888777665444322 45677888888888888876
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.88 E-value=4.9e-09 Score=80.21 Aligned_cols=65 Identities=32% Similarity=0.567 Sum_probs=58.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
+.+|..++..|+|++|+.+|++++..+|.++.+++.+|.++..+|++++|+.+|++++..+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999875
No 148
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1.6e-06 Score=81.73 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHH
Q 004339 362 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 441 (760)
Q Consensus 362 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A 441 (760)
.+..|.-+|+..-+..| ..+......|.|++.+|+|++|...++.++.. .+++++++.++..+-...|...++
T Consensus 188 k~qdAfyifeE~s~k~~-----~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTP-----PTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hhhhHHHHHHHHhcccC-----CChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHH
Confidence 45555555555554433 34555555555555555555555555555553 445555555555555555554443
Q ss_pred H-HHHHHHHHhCCCChhH
Q 004339 442 K-KSLLRAIHLAPSNYTL 458 (760)
Q Consensus 442 ~-~~~~~al~~~p~~~~~ 458 (760)
. .++.+....+|+++.+
T Consensus 261 ~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 261 TERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHhcCCcchHH
Confidence 3 3334444445555433
No 149
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5e-06 Score=78.58 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 407 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 407 (760)
.+..|.-+|+..-...|..+..+++++.|+..+|+|++|..+++.++..++ .+|.++.|+..+-...|.-.++..
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-----KDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCChHHHH
Confidence 344444445544444444444555555555555555555555555554444 444555555444444444444433
Q ss_pred H
Q 004339 408 M 408 (760)
Q Consensus 408 ~ 408 (760)
-
T Consensus 263 r 263 (299)
T KOG3081|consen 263 R 263 (299)
T ss_pred H
Confidence 3
No 150
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.86 E-value=9.9e-07 Score=100.12 Aligned_cols=218 Identities=19% Similarity=0.182 Sum_probs=128.9
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 67 AQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 145 (760)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 145 (760)
...-|.+.+..+|+....|+.+-.... .++.+.|...+++|+....-........+|..+-.+...-|.-+.....|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 345556666666666666665544444 4566666666666665431111111234454444444445555566666666
Q ss_pred HhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 146 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 225 (760)
Q Consensus 146 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 225 (760)
|.+.| +...++..|..+|...+.+++|.++|+.+++
T Consensus 1523 Acqyc--------------------------------------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~K 1558 (1710)
T KOG1070|consen 1523 ACQYC--------------------------------------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLK 1558 (1710)
T ss_pred HHHhc--------------------------------------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 65532 2334566666667777777777777777776
Q ss_pred HcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHH
Q 004339 226 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 303 (760)
Q Consensus 226 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (760)
........|..++..++.+++-+.|..++.+|+..-|. +..+....+.+.++.|+.+.+..+|+-.+..+|. ....|
T Consensus 1559 KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW 1637 (1710)
T KOG1070|consen 1559 KFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLW 1637 (1710)
T ss_pred HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHH
Confidence 66666666777777776666666667777777766665 5556666666666666666666666666666665 45555
Q ss_pred HHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 304 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
..+... -... |....+..+|++++.+
T Consensus 1638 ~VYid~-eik~------------~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1638 SVYIDM-EIKH------------GDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHH-HHcc------------CCHHHHHHHHHHHHhc
Confidence 544444 3333 5666666666666554
No 151
>PRK11906 transcriptional regulator; Provisional
Probab=98.85 E-value=1.3e-07 Score=97.34 Aligned_cols=130 Identities=19% Similarity=0.165 Sum_probs=117.1
Q ss_pred hhhHHHHHHHcCC---HHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCc
Q 004339 17 YYGLGQVQLKLGD---FRSALTNFEKVL---EIYPDNCETLKALGHIYVQL---------GQIEKAQELLRKAAKIDPRD 81 (760)
Q Consensus 17 ~~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~ 81 (760)
++..|...+..+. ...|+.+|.+++ .++|..+.+|..++.|++.. ....+|+.+..+++.++|.+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 3778888877664 567999999999 99999999999999999865 34578899999999999999
Q ss_pred HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 82 AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 82 ~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
+.++..+|.++. .++++.|+..|++|+.++|+. +.+|+..|.+++..|+.+.|+..+++++.+.|
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-----A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI-----ASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 999999999887 778999999999999999997 99999999999999999999999999998554
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.85 E-value=1.8e-08 Score=83.71 Aligned_cols=97 Identities=36% Similarity=0.553 Sum_probs=83.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-c
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-S 94 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~ 94 (760)
+++.+|.+++..|++..|+..|.+++...|.+..++..+|.++...|+++.|+.+|..++...|.+..++..+|.++. .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 577888999999999999999999999888888888999999999999999999999999888888888888888777 6
Q ss_pred CCHhHHHHHHHHHHHHHH
Q 004339 95 SDTGAALDAFKTARTLLK 112 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~ 112 (760)
|++..|...+..++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 788888888888776654
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.85 E-value=1.1e-07 Score=86.12 Aligned_cols=126 Identities=21% Similarity=0.316 Sum_probs=106.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD---AQAFIDLG 89 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 89 (760)
..|..+...+..+++..+...++.++..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. +.+.+.++
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 45566666678999999999999999999998 5788889999999999999999999999987654 45788899
Q ss_pred HHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004339 90 ELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147 (760)
Q Consensus 90 ~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 147 (760)
.++. .|++++|+..+..+.. ....+.++..+|.+|...|++++|+..|+++|
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9988 8899999999966221 12236788999999999999999999999875
No 154
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.85 E-value=1.8e-05 Score=78.26 Aligned_cols=201 Identities=20% Similarity=0.233 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH-
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILF--KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD- 273 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~- 273 (760)
.......+..+...+.+..+...+...+. ..+.....+..++.++...+.+..++..+..++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45666777777777777777777777776 566677777777777777777777777777777766666555555555
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCC--CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC-CHHHH
Q 004339 274 LELKNDDWVKAKETFRAASDATD--GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAA 350 (760)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 350 (760)
++...|++..|...|.+++...+ ......+...+.. +... +++..|+..+.+++...+. ....+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~~ 205 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGAL-LEAL------------GRYEEALELLEKALKLNPDDDAEAL 205 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH-HHHh------------cCHHHHHHHHHHHHhhCcccchHHH
Confidence 67777777777777777765433 1233333333333 3344 6666677777776666666 46666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
..++.++...+.+..|+..+..++...| .....+..++..+...+.+..+...+..++..
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALELDP-----DNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhhCc-----ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666666666665 33445555555555555566666666666654
No 155
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=3.7e-07 Score=83.03 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=92.1
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
..+..++..|.+|-..|-+.-|.--|.+++.+.|..+.++..+|..+...|+++.|.+.|...++++|.+..+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 35677888899999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSY 301 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (760)
+.--|++.-|..-+.+-.+..|. +++
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~-DPf 168 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPN-DPF 168 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCC-ChH
Confidence 88889999998888888877776 554
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.84 E-value=4.2e-08 Score=81.50 Aligned_cols=99 Identities=20% Similarity=0.389 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 428 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l 428 (760)
+++.+|.++...|++.+|+.+|..++...| .++.+++.+|.++...|+++.|+..|..++.. .+.+..++..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 74 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-----DNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHH
Confidence 467899999999999999999999999988 67789999999999999999999999999996 56667899999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 429 ARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 429 a~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
|.++...|++..|..++..++...|.
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999999988874
No 157
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=3.7e-05 Score=78.48 Aligned_cols=416 Identities=14% Similarity=0.071 Sum_probs=256.0
Q ss_pred chhhhhHHHHHHHcC--CHHHHHHHHHHHHHHCCCC---HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcC---CCc---
Q 004339 14 IFPYYGLGQVQLKLG--DFRSALTNFEKVLEIYPDN---CETLKALGHIY-VQLGQIEKAQELLRKAAKID---PRD--- 81 (760)
Q Consensus 14 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~~--- 81 (760)
+.+++++|..+...| +...++.+++.++...|.+ +.....+|.++ ....+++.|...++++..+. |+.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 457888999999999 8999999999999887764 45677777754 45689999999999998664 433
Q ss_pred -HHHHHHHHHHHc-cC-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc-------
Q 004339 82 -AQAFIDLGELLI-SS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI------- 151 (760)
Q Consensus 82 -~~~~~~la~~~~-~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------- 151 (760)
..+...|+.+|. .. .+..|...+++++++....+ ......++.|+.++....++..|+..+.-......
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p-~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~yl 165 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP-YWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYL 165 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHH
Confidence 345667888877 33 78899999999999876652 22346678889999999999999887533221100
Q ss_pred -------------------------------hhhhhcc-----cchhhh--------hhhhhHHHHH-HhHHhhhhhhcc
Q 004339 152 -------------------------------WLTLLDS-----KTKTYV--------IDASASMLQF-KDMQLFHRFEND 186 (760)
Q Consensus 152 -------------------------------~~~~~~~-----~~~~~~--------~~~~~~~~~~-~~~~~~~~l~~~ 186 (760)
|...... ....++ +..+...... ...++-..+...
T Consensus 166 r~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqti 245 (629)
T KOG2300|consen 166 RMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTI 245 (629)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhcc
Confidence 0000000 000000 0000000000 000111111111
Q ss_pred CCC--------ccCCcch---------HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHc------CCcHHH--------
Q 004339 187 GNH--------VELPWNK---------VTVLFNLAR--LLEQIHDTVAASVLYRLILFKY------QDYVDA-------- 233 (760)
Q Consensus 187 ~~~--------~~~~p~~---------~~~~~~la~--~~~~~g~~~~A~~~~~~~l~~~------p~~~~~-------- 233 (760)
... +..++-. ..++..+.. --...|-+++|.++-.+++..- |....+
T Consensus 246 st~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~ 325 (629)
T KOG2300|consen 246 STSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMIL 325 (629)
T ss_pred CCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 111 0111100 111111111 1124577888888888777542 212222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---cCC-------ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHH
Q 004339 234 YLRLAAIAKARNNLQLSIELVNEALKV---NGK-------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 303 (760)
Q Consensus 234 ~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (760)
+-.++.+-.-.|++.+|+.-+..+... .|. .+.+.+.+|......+.++.|...|..+.+.....+..++
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence 234555667789999999888777654 343 3447778888888899999999999999987765454443
Q ss_pred --HHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHH
Q 004339 304 --LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN----------LYAANGAGVVLAEKGQFDVSKDLFT 371 (760)
Q Consensus 304 --~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~ 371 (760)
.+++.. |... ++.+.-.+.++ .+.|.+ ..+++..|...+.++++.+|...+.
T Consensus 406 ~nlnlAi~-YL~~------------~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~ 469 (629)
T KOG2300|consen 406 CNLNLAIS-YLRI------------GDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLR 469 (629)
T ss_pred HHHhHHHH-HHHh------------ccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 455666 7766 55443333333 334432 2356667888889999999999999
Q ss_pred HHHHHhcCCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHH----HHHHHHHHHHhcc--HHHHHHH
Q 004339 372 QVQEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI----LLYLARTHYEAEQ--WQDCKKS 444 (760)
Q Consensus 372 ~al~~~p~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~la~~~~~~g~--~~~A~~~ 444 (760)
+.++...... +.-..-.+..|++++...|+..++.....-++......+|..+ ...+-.+|...|+ .....+.
T Consensus 470 e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~ 549 (629)
T KOG2300|consen 470 ETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEA 549 (629)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 9988763111 1112445678899999999999999999988887655555222 2244556666676 4445444
Q ss_pred HH
Q 004339 445 LL 446 (760)
Q Consensus 445 ~~ 446 (760)
|.
T Consensus 550 ~~ 551 (629)
T KOG2300|consen 550 FR 551 (629)
T ss_pred HH
Confidence 44
No 158
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.84 E-value=0.00019 Score=74.59 Aligned_cols=411 Identities=13% Similarity=0.153 Sum_probs=222.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCC
Q 004339 38 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGE 116 (760)
Q Consensus 38 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~ 116 (760)
++-++.+|.+..+|+.|..-+..+ -+++....|++.+...|..+.+|........ ..+|.....+|.+++...-+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--- 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--- 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh---
Confidence 667889999999999999887776 9999999999999999999999998888766 67999999999998875443
Q ss_pred CCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhcc---------
Q 004339 117 EVPIEVLN-NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND--------- 186 (760)
Q Consensus 117 ~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------- 186 (760)
.++|. .|..+-...|....+....-++......-.- ++.....+...-..+.+.....
T Consensus 86 ---lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig---------~di~s~siW~eYi~FL~~vea~gk~ee~QRI 153 (656)
T KOG1914|consen 86 ---LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIG---------MDIKSYSIWDEYINFLEGVEAVGKYEENQRI 153 (656)
T ss_pred ---HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc---------cCcccchhHHHHHHHHHcccccccHHHHHHH
Confidence 34553 2334444455555544444444432100000 0000000000000011100000
Q ss_pred -------CCCccCCcchHHHHHHHHHHHHHcCCHHH--------------------HHHHHHHHHHH-------cCC---
Q 004339 187 -------GNHVELPWNKVTVLFNLARLLEQIHDTVA--------------------ASVLYRLILFK-------YQD--- 229 (760)
Q Consensus 187 -------~~~~~~~p~~~~~~~~la~~~~~~g~~~~--------------------A~~~~~~~l~~-------~p~--- 229 (760)
.+++..+-.+ +-.+...-..|+. |...++..... .|.
T Consensus 154 ~~vRriYqral~tPm~n------lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~ 227 (656)
T KOG1914|consen 154 TAVRRIYQRALVTPMHN------LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPP 227 (656)
T ss_pred HHHHHHHHHHhcCcccc------HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence 0111111111 1111111111111 11222221110 000
Q ss_pred --------cHHHHHHHHHHHHHcC------CH--HHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCC-------------
Q 004339 230 --------YVDAYLRLAAIAKARN------NL--QLSIELVNEALKVNGKYPNALSMLGDLELKNDD------------- 280 (760)
Q Consensus 230 --------~~~~~~~la~~~~~~g------~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------- 280 (760)
....|.++...-...+ .. ..-.-.|++++...+.++.+|+..+..+...++
T Consensus 228 ~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 228 KGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKS 307 (656)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchh
Confidence 0111222222211111 00 112234566666667777777766665555554
Q ss_pred -HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q 004339 281 -WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL-YAANGAGVVLA 358 (760)
Q Consensus 281 -~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 358 (760)
-.++..+|++++......+...++.++.. -.. +. .-..++.....+.+++.....++ .+|..+-..-.
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~--eE~-~~-------~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~ir 377 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADY--EES-RY-------DDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIR 377 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHH-hc-------ccchhhhhHHHHHHHHhhhccCCceehhHHHHHHH
Confidence 56667777777664332222222222221 100 00 00135556667777666533322 24455555555
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV-YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
+..-...|..+|.++.+..- ....++..-|.+ |...++..-|..+|+-.+..| ++.+..-+.....+...|+
T Consensus 378 R~eGlkaaR~iF~kaR~~~r-----~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNd 450 (656)
T KOG1914|consen 378 RAEGLKAARKIFKKAREDKR-----TRHHVFVAAALMEYYCSKDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLND 450 (656)
T ss_pred HhhhHHHHHHHHHHHhhccC-----CcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCc
Confidence 66667888888988887543 222444433333 556788999999999999875 4456666677777888899
Q ss_pred HHHHHHHHHHHHHh--CCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004339 438 WQDCKKSLLRAIHL--APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 505 (760)
Q Consensus 438 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~ 505 (760)
-..|...|++++.. .|+ ....++.++. +++.-++++..++++-.+....-
T Consensus 451 d~N~R~LFEr~l~s~l~~~------ks~~Iw~r~l------------~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 451 DNNARALFERVLTSVLSAD------KSKEIWDRML------------EYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred chhHHHHHHHHHhccCChh------hhHHHHHHHH------------HHHHhcccHHHHHHHHHHHHHhc
Confidence 99999999999876 322 2223344443 56667777777777666555444
No 159
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=1.5e-06 Score=98.74 Aligned_cols=235 Identities=13% Similarity=0.128 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cCC----ChHHHHHHHHHHhhcCCHHHHHHHH
Q 004339 214 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-NGK----YPNALSMLGDLELKNDDWVKAKETF 288 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~----~~~~~~~la~~~~~~g~~~~A~~~~ 288 (760)
.+...-|.+.+..+|+..-.|+.+...++..+..++|..+++++|.. ++. -..+|..+-++...-|.-+...+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34556788888889999999999999999999999999999999964 332 2347777777777778888888999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004339 289 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKD 368 (760)
Q Consensus 289 ~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 368 (760)
+++.+... ....+..|..+ |... +.++.|.++|+..++..-....+|..+|..++...+-+.|..
T Consensus 1521 eRAcqycd--~~~V~~~L~~i-y~k~------------ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1521 ERACQYCD--AYTVHLKLLGI-YEKS------------EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred HHHHHhcc--hHHHHHHHHHH-HHHh------------hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHH
Confidence 99988764 34567788888 8888 999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 369 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 369 ~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
++.+|+...|.. ....+....|.+-++.|+.+.+..+|+..+.. .|...++|.-+...-.+.|....++..|+++
T Consensus 1586 lL~rAL~~lPk~---eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQ---EHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHHHhhcchh---hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999943 46788889999999999999999999999995 6777889999999999999999999999999
Q ss_pred HHhC--CCChhHHhhHHHHHHH
Q 004339 449 IHLA--PSNYTLRFDAGVAMQK 468 (760)
Q Consensus 449 l~~~--p~~~~~~~~la~~~~~ 468 (760)
+.+. |......|..-+-|.+
T Consensus 1661 i~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HhcCCChhHhHHHHHHHHHHHH
Confidence 8764 5555556655555444
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.81 E-value=1.5e-07 Score=93.12 Aligned_cols=111 Identities=13% Similarity=0.146 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-cHH
Q 004339 346 NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-DAQ 423 (760)
Q Consensus 346 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~ 423 (760)
+...++..|..+ ...|+|++|+..|..++...|.+. ..+.+++.+|.+|+..|+++.|+..|..++..+|..+ .+.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~--~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST--YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 456667777766 567999999999999999999542 2378999999999999999999999999999876543 499
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
+++.+|.++..+|+++.|+.+|++++..+|+...+
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999999988654
No 161
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.81 E-value=9.3e-06 Score=80.32 Aligned_cols=224 Identities=21% Similarity=0.256 Sum_probs=192.1
Q ss_pred cCCHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 210 IHDTVAASVLYRLILFKYQD--YVDAYLRLAAIAKARNNLQLSIELVNEALK--VNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 210 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
.+.+..+...+..++...+. ........+..+...+.+..+...+...+. ..+.....+..++.++...+.+..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 57778888888888887776 478888999999999999999999999997 67888889999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHH-HHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcC
Q 004339 286 ETFRAASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT---SNLYAANGAGVVLAEKG 361 (760)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~lg~-~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g 361 (760)
..+..++...+.. .......+. + +... |.+..|...|.+++...| .....+..++..+...+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGA-LYEL------------GDYEEALELYEKALELDPELNELAEALLALGALLEALG 181 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc
Confidence 9999999877653 233333333 5 6676 999999999999988777 45666777777788999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHH
Q 004339 362 QFDVSKDLFTQVQEAASGSVFVQ-MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD 440 (760)
Q Consensus 362 ~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~ 440 (760)
++..|+..+..++...+ . ....+..++.++...+.+..|+..+..++.. .+.....+..++..+...|.+..
T Consensus 182 ~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 182 RYEEALELLEKALKLNP-----DDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred CHHHHHHHHHHHHhhCc-----ccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHH
Confidence 99999999999999998 5 5889999999999999999999999999996 34457778888888887788999
Q ss_pred HHHHHHHHHHhCCC
Q 004339 441 CKKSLLRAIHLAPS 454 (760)
Q Consensus 441 A~~~~~~al~~~p~ 454 (760)
+...+.+++...|.
T Consensus 255 ~~~~~~~~~~~~~~ 268 (291)
T COG0457 255 ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999999997
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.80 E-value=2.1e-08 Score=81.14 Aligned_cols=83 Identities=23% Similarity=0.418 Sum_probs=51.1
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHH
Q 004339 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ 439 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 439 (760)
.|+|+.|+.+|.+++...|.+ .+..+++.+|.||+..|+|.+|+.++++ +.. .+.++.+.+.+|.|++.+|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~---~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN---PNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT---HHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHHCCCC---hhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHH
Confidence 466667777777777766621 1355566667777777777777777766 332 3344566666677777777777
Q ss_pred HHHHHHHHH
Q 004339 440 DCKKSLLRA 448 (760)
Q Consensus 440 ~A~~~~~~a 448 (760)
+|+.+|+++
T Consensus 76 eAi~~l~~~ 84 (84)
T PF12895_consen 76 EAIKALEKA 84 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 777776654
No 163
>PRK15331 chaperone protein SicA; Provisional
Probab=98.80 E-value=4.5e-08 Score=86.60 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=92.4
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
.+++.....|..|.-++..|++++|..+|.-+...+|.++..|+.||.|+..+++|.+|+..|..+..++++++.+.+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 45566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHH
Q 004339 89 GELLI-SSDTGAALDAFKTART 109 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~ 109 (760)
|.|+. .|+...|+.+|..++.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 99988 7899999999999888
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.80 E-value=7.6e-08 Score=89.81 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHhccHHHH
Q 004339 363 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDC 441 (760)
Q Consensus 363 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A 441 (760)
|..+...+...+...+.. ....+|+.+|.++..+|++++|+..|.+++...+.+.+ +.++..+|.+|...|++++|
T Consensus 15 ~~~~~~~l~~~~~~~~~~---~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 15 FTIVADILLRILPTTSGE---KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred cccchhhhhHhccCCchh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 445555554444333311 34778899999999999999999999999987544433 56899999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004339 442 KKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNL 507 (760)
Q Consensus 442 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~~ 507 (760)
+.+|.+++.+.|.+...+.+++.++...++.. ..+.++..++..+..|..+|.......|.
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~-----~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQA-----IEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHH-----HHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999998776422 23457788888899999998888776654
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.79 E-value=2.3e-08 Score=80.97 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=71.3
Q ss_pred hcHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 004339 327 THLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 404 (760)
|+++.|+.+|++++...|. +..+++.+|.||+..|+|.+|+.++++ ....| .++.+++.+|.|++.+|+|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-----~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-----SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-----CHHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-----CCHHHHHHHHHHHHHhCCHHH
Confidence 8999999999999999995 466788899999999999999999999 77777 678899999999999999999
Q ss_pred HHHHHHHH
Q 004339 405 AMKMYQNC 412 (760)
Q Consensus 405 A~~~~~~a 412 (760)
|+..|+++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
No 166
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.79 E-value=6.6e-05 Score=82.52 Aligned_cols=124 Identities=18% Similarity=0.160 Sum_probs=95.2
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+-++..|+...+....|.++++.|.+++|..+++..-...+++...+-.+-.||..+|++++|..+|++++..+|+ ...
T Consensus 34 kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel 112 (932)
T KOG2053|consen 34 KLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL 112 (932)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence 4567889999999999999999999999998888887777888899999999999999999999999999999998 777
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 133 (760)
...+-.+|. .+.|.+-.+.--+..+..|+. +...|..+..+....
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~----~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYKNFPKR----AYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc----cchHHHHHHHHHHhc
Confidence 777777776 445554444434444455554 234444444444443
No 167
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=2.4e-06 Score=86.81 Aligned_cols=223 Identities=12% Similarity=0.036 Sum_probs=139.9
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHH---Hhc---CC--C
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD----N-CETLKALGHIYVQLGQIEKAQELLRKA---AKI---DP--R 80 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~-~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~---~p--~ 80 (760)
...+|..|.+++....|..|+......+..-.. . ....+..-.++....+-++|+.++.-. +.. .| +
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn 179 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN 179 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 456788999999999999999887776543211 1 122233334445555666666554322 211 11 0
Q ss_pred cHHH-------------------------HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 004339 81 DAQA-------------------------FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 134 (760)
Q Consensus 81 ~~~~-------------------------~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 134 (760)
+... .......|. ..+...+..-.+.++.+..+ .+.++...+..++..|
T Consensus 180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~-----s~~~l~LKsq~eY~~g 254 (696)
T KOG2471|consen 180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQD-----SSMALLLKSQLEYAHG 254 (696)
T ss_pred ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCC-----CcHHHHHHHHHHHHhc
Confidence 1000 000001111 11222222222333333222 4678888899999999
Q ss_pred CHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcch--HHHHHHHHHHHHHcCC
Q 004339 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK--VTVLFNLARLLEQIHD 212 (760)
Q Consensus 135 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~--~~~~~~la~~~~~~g~ 212 (760)
+|.+|.+.+...--.+ .......|.. ...|.++|.++++.|.
T Consensus 255 n~~kA~KlL~~sni~~------------------------------------~~g~~~T~q~~~cif~NNlGcIh~~~~~ 298 (696)
T KOG2471|consen 255 NHPKAMKLLLVSNIHK------------------------------------EAGGTITPQLSSCIFNNNLGCIHYQLGC 298 (696)
T ss_pred chHHHHHHHHhccccc------------------------------------ccCccccchhhhheeecCcceEeeehhh
Confidence 9999999886531100 0000122222 2356789999999999
Q ss_pred HHHHHHHHHHHHHH---------cC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 213 TVAASVLYRLILFK---------YQ---------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 213 ~~~A~~~~~~~l~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
|.-+..+|.++++. .| ....+.++.|..|...|++-.|.++|.+++..+..+|.+|..++.+
T Consensus 299 y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 299 YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999999951 11 2346788999999999999999999999999999999999999988
Q ss_pred Hhh
Q 004339 275 ELK 277 (760)
Q Consensus 275 ~~~ 277 (760)
.+.
T Consensus 379 Cim 381 (696)
T KOG2471|consen 379 CIM 381 (696)
T ss_pred HHH
Confidence 763
No 168
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=3.5e-06 Score=85.68 Aligned_cols=354 Identities=15% Similarity=0.100 Sum_probs=208.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHH-HHHhc---CCCCCHHHHHH
Q 004339 51 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTART-LLKKA---GEEVPIEVLNN 125 (760)
Q Consensus 51 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~-~~~~~---~~~~~~~~~~~ 125 (760)
.......|.++.+...+..-.+.++.+..+.+.+++..+..++ .|++.+|.+.+...-- -.|.. +.-....+|++
T Consensus 209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecC
Confidence 3334455566677777777777777777788888888888866 8999999988765311 11110 00112456799
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc-ccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALG-DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 204 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la 204 (760)
+|.++++.|.|.-+..+|.+++. .|..... . +.......-.......++|++|
T Consensus 289 lGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~--g------------------------~~~~~~~tls~nks~eilYNcG 342 (696)
T KOG2471|consen 289 LGCIHYQLGCYQASSVLFLKALRNSCSQLRN--G------------------------LKPAKTFTLSQNKSMEILYNCG 342 (696)
T ss_pred cceEeeehhhHHHHHHHHHHHHHHHHHHHhc--c------------------------CCCCcceehhcccchhhHHhhh
Confidence 99999999999999999999995 2210000 0 0000000001223567999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC---------------------------------------
Q 004339 205 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN--------------------------------------- 245 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------------------------------------- 245 (760)
..|...|++-.|.++|.+++..+-.++..|+++|.+++...
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~ 422 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVE 422 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceec
Confidence 99999999999999999999999999999999999875311
Q ss_pred ----------CHHHHHHHHHHHHHHcCC----------------------------------------------Ch----
Q 004339 246 ----------NLQLSIELVNEALKVNGK----------------------------------------------YP---- 265 (760)
Q Consensus 246 ----------~~~~A~~~~~~al~~~p~----------------------------------------------~~---- 265 (760)
..+-|.-++..++-+-|. .|
T Consensus 423 ~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e 502 (696)
T KOG2471|consen 423 LAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFE 502 (696)
T ss_pred cccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHH
Confidence 011133334333322110 00
Q ss_pred -------HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHH
Q 004339 266 -------NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 338 (760)
Q Consensus 266 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 338 (760)
.++...+.+-+..|+.-.|+..-.+.+.... -..++..||.+ |........ .+..+|...+.-
T Consensus 503 ~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~--lS~~~kfLGHi-YAaEAL~ll-------dr~seA~~HL~p 572 (696)
T KOG2471|consen 503 DLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD--LSKIYKFLGHI-YAAEALCLL-------DRPSEAGAHLSP 572 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh--hhhHHHHHHHH-HHHHHHHHc-------CChhhhhhccCh
Confidence 1344556666777888888888887777643 34555666666 543211100 333344333322
Q ss_pred HHhh--------CCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 339 VIVQ--------HTSNLYAANGAGVVLAEKGQFDVSKDL-FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 409 (760)
Q Consensus 339 al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (760)
-+-- +..+...|..-- ++++- -.+..+..|.+...-...++++||.++.-+|.+++|..++
T Consensus 573 ~~~~~~~f~~~~n~~Df~~~~~~~----------e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll 642 (696)
T KOG2471|consen 573 YLLGQDDFKLPYNQEDFDQWWKHT----------ETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLL 642 (696)
T ss_pred hhcCCcccccccchhhhhhhhccc----------cccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHH
Confidence 1100 000011111000 00000 0001111111111122456788888888888888888888
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 410 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 410 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
..+..+.+.-..+.+....-.+-.++|+...|...+++.-.
T Consensus 643 ~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 643 THAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred HHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 88888765334456655555566778888888888877543
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=98.77 E-value=1.1e-07 Score=84.18 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=98.3
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004339 340 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419 (760)
Q Consensus 340 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 419 (760)
..+.++.....+..|.-++..|++++|..+|+-..-.+| .++..|+.||.|+..+++|+.|+..|..+..+ .+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-----~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~ 102 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF-----YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LK 102 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc
Confidence 344555667888899999999999999999999999998 78999999999999999999999999999886 56
Q ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 420 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 420 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
.++...++.|.||+.+|+...|+.+|..++. .|.+..+
T Consensus 103 ~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 103 NDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred CCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 7888899999999999999999999999998 4654443
No 170
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.8e-07 Score=92.59 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=101.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CC---------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FV---------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 420 (760)
-..|..|++.|+|..|...|.+++...+... ++ .-..+++|++.||.+++.|..|+..+.++|.. .|+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~ 289 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPN 289 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCC
Confidence 3468889999999999999999887764211 10 01347899999999999999999999999996 899
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 421 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
++.++|..|.+|..+|+|+.|+..|++|+++.|+|..+...|..|-++..
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988865543
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.75 E-value=2.5e-07 Score=100.89 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=105.1
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHH--hcCCCCCCchHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG--------QFDVSKDLFTQVQEA--ASGSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~la~~~ 396 (760)
+.+..|+.+|++++.++|++..++..++.++.... ....+.....+++.+ .| ..+.++..+|.++
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~-----~~~~~~~ala~~~ 430 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN-----VLPRIYEILAVQA 430 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc-----CChHHHHHHHHHH
Confidence 56889999999999999999999999998886542 233455555555554 33 5678999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 397 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
...|++++|...|++++.+ +| +...|..+|.++...|++++|+..|.+|+.++|.++.
T Consensus 431 ~~~g~~~~A~~~l~rAl~L--~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 431 LVKGKTDEAYQAINKAIDL--EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HhcCCHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 9999999999999999997 44 5889999999999999999999999999999999885
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.75 E-value=1.9e-07 Score=87.20 Aligned_cols=113 Identities=16% Similarity=0.065 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
....+++.+|.++...|+++.|+..|.+++.+.|+ .+.++..+|.++...|++++|+.+|.+++.+.|.....+..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 35678899999999999999999999999988765 345899999999999999999999999999999999999998
Q ss_pred HHHHh-------hcCCHH-------HHHHHHHHhhhcCCCCChHHHHHHH
Q 004339 272 GDLEL-------KNDDWV-------KAKETFRAASDATDGKDSYATLSLG 307 (760)
Q Consensus 272 a~~~~-------~~g~~~-------~A~~~~~~al~~~~~~~~~~~~~lg 307 (760)
|.++. ..|++. +|+.+|.+++...|.....+...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 88888 777877 4455555566666654333333333
No 173
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=8e-07 Score=80.87 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q 004339 231 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 310 (760)
Q Consensus 231 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~ 310 (760)
...++..|.+|-..|-..-|.-.|.+++.+.|..+.++..+|..+...|+|+.|...|...+++.|. ..++..+.|..
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~- 142 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIA- 142 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhcccee-
Confidence 4456677888888888999999999999999999999999999999999999999999999999998 78888888888
Q ss_pred HHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHH
Q 004339 311 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI 390 (760)
Q Consensus 311 y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 390 (760)
++-. |++.-|..-+.+....+|+++.--..+-.. ...-++.+|..-+.+-..... .....|.
T Consensus 143 ~YY~------------gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d-----~e~WG~~ 204 (297)
T COG4785 143 LYYG------------GRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSD-----KEQWGWN 204 (297)
T ss_pred eeec------------CchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhcc-----HhhhhHH
Confidence 6666 999999999999999999998733222111 233466777655544333221 1222222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 391 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
.+-+-+|+... ...++++..-..++.. .+++++||..|...|+..+|...|+-|+..+
T Consensus 205 ---iV~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 205 ---IVEFYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ---HHHHHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 22233343322 1233333332111111 7789999999999999999999999888754
No 174
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.74 E-value=3.7e-06 Score=80.00 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=143.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH---HH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---AL 268 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~ 268 (760)
..+..++.-|...+..|+|.+|+..|+.+...+|.. ..+.+.++.++++.++++.|+..+++.+.++|.++. ++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 346788999999999999999999999999888754 467888888999999999999999999999887765 45
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 269 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
+..|.++ |.. +... .... .....|+..|+.++...|++.+
T Consensus 112 YlkgLs~------------~~~---i~~~-------------~rDq------------~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 112 YLKGLSY------------FFQ---IDDV-------------TRDQ------------SAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHHH------------hcc---CCcc-------------ccCH------------HHHHHHHHHHHHHHHHCCCCcc
Confidence 5555541 111 1100 0001 4456778888899999998876
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLY 427 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~ 427 (760)
+-.....+ ..+... ...--..+|..|.+.|.+-.|+..++.++..++.... .+.+..
T Consensus 152 a~dA~~~i-----------~~~~d~-----------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~ 209 (254)
T COG4105 152 APDAKARI-----------VKLNDA-----------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALAR 209 (254)
T ss_pred hhhHHHHH-----------HHHHHH-----------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHH
Confidence 43322221 111111 1333467899999999999999999999998655444 788999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCh
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 456 (760)
+..+|+.+|-.++|...-.-.-.-.|+++
T Consensus 210 l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 210 LEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99999999999998877654444455554
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.74 E-value=2.5e-07 Score=94.03 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=133.2
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
|.+|. .+++.+|..+|.++.......+... ....+...+.+|... ++..|+.+|.+++.+...
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~-------------- 106 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE-------------- 106 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh--------------
Confidence 44555 5677777777777766655432221 234556666666555 999999999999863110
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcC------CcHHHHHHHHH
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASVLYRLILFKYQ------DYVDAYLRLAA 239 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p------~~~~~~~~la~ 239 (760)
......-..++..+|.+|... |+++.|+.+|++++.... ....++..+|.
T Consensus 107 -----------------------~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 107 -----------------------AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp -----------------------CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -----------------------cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 001122356888999999999 999999999999997742 12456789999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCC----h---HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCC-hHHHHHHHHHHH
Q 004339 240 IAKARNNLQLSIELVNEALKVNGKY----P---NALSMLGDLELKNDDWVKAKETFRAASDATDGKD-SYATLSLGNWNY 311 (760)
Q Consensus 240 ~~~~~g~~~~A~~~~~~al~~~p~~----~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~lg~~~y 311 (760)
++...|+|.+|+..|+++....-.+ . ..++..+.+++..|++..|...|.+.....|.-. +.-...+..+
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l-- 241 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL-- 241 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH--
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH--
Confidence 9999999999999999998754221 1 2456778899999999999999999998876421 1111111111
Q ss_pred HHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 312 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
+..+... ....+..|+.-|..+.+++|
T Consensus 242 ~~A~~~~------D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 242 LEAYEEG------DVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHTT-------CCCHHHHCHHHTTSS---H
T ss_pred HHHHHhC------CHHHHHHHHHHHcccCccHH
Confidence 1111111 11567777777776655543
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.73 E-value=3.1e-07 Score=100.24 Aligned_cols=137 Identities=15% Similarity=0.045 Sum_probs=114.5
Q ss_pred CCCCCch--hhhhHHHHHHHcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 004339 9 KPHEFIF--PYYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKALGHIYVQLG--------QIEKAQELLRKAA 75 (760)
Q Consensus 9 ~~p~~~~--~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al 75 (760)
..|.++. .++..|..|+..+. +..|+.+|+++++.+|+++.++-.++.+|.... +...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4455544 45778888887765 889999999999999999999999888876542 3456666677766
Q ss_pred hc--CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 76 KI--DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 76 ~~--~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
.+ +|..+.++..+|.++. .|++++|...+++|+.++|. ..+|..+|.++...|++++|+..|.+++.++|
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 64 7778888988988877 88999999999999999984 68999999999999999999999999999766
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.71 E-value=3.5e-07 Score=87.82 Aligned_cols=109 Identities=16% Similarity=0.277 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 428 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 428 (760)
.+..|.-++..|+|..|...|...+...|++.+ .+.+++.||.+++.+|+|..|...|..+++.+|..+- ++.++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 677888889999999999999999999997754 4889999999999999999999999999998766544 8999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChhHHh
Q 004339 429 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 460 (760)
Q Consensus 429 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 460 (760)
|.|...+|+.++|..+|+++++.+|....+..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999999999999999999999999876653
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.71 E-value=6.3e-08 Score=74.01 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 265 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 265 (760)
+.+|..++..|++++|+..|+.++..+|.++.+++.+|.++...|++++|+.+|++++..+|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45788899999999999999999999999999999999999999999999999999999998875
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.67 E-value=2.6e-07 Score=91.43 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=87.7
Q ss_pred chhhhhHHHHH-HHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHH
Q 004339 14 IFPYYGLGQVQ-LKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---DAQAFI 86 (760)
Q Consensus 14 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 86 (760)
...+|..|..+ +..|+|++|+..|+.++..+|++ +.+++.+|.+|+..|+++.|+..|.+++..+|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45678888876 56799999999999999999987 589999999999999999999999999988776 467788
Q ss_pred HHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 87 DLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 87 ~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
.+|.++. .|++..|+..|++++...|+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 8888886 788888888888888888875
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.67 E-value=6.4e-07 Score=76.62 Aligned_cols=99 Identities=22% Similarity=0.191 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
.+++.+|.++-..|+.++|+.+|++++..++ ..+....++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL----------------------------------------~~~~~~~a~ 41 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGL----------------------------------------SGADRRRAL 41 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------------------------------CchHHHHHH
Confidence 4678888888888998999999988887432 233445688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
+.+|.++..+|++++|+.+++..+..+|+ +..+...++.++...|++++|+..+-.++.
T Consensus 42 i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 42 IQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888787 777777888888888888888888876664
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.66 E-value=8.7e-08 Score=74.07 Aligned_cols=68 Identities=35% Similarity=0.509 Sum_probs=62.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 24 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
++..|+|++|+.+|++++..+|++..+++.+|.+|+..|++++|...+.+++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999988888777653
No 182
>PRK11906 transcriptional regulator; Provisional
Probab=98.64 E-value=1.5e-06 Score=89.76 Aligned_cols=168 Identities=10% Similarity=0.048 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHH---hcCCCcHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004339 52 KALGHIYVQLGQ---IEKAQELLRKAA---KIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125 (760)
Q Consensus 52 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 125 (760)
+..|...+..+. ...|+.+|.+++ .++|....+|..++.|++.. ..
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~----------------------------~~ 310 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL----------------------------AL 310 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH----------------------------HH
Confidence 556666555543 466777888888 77888888877777775420 00
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~ 205 (760)
+|..- ......+|.....+++. .+|.++.+++.+|.
T Consensus 311 ~g~~~-~~~~~~~a~~~A~rAve-------------------------------------------ld~~Da~a~~~~g~ 346 (458)
T PRK11906 311 HGKSE-LELAAQKALELLDYVSD-------------------------------------------ITTVDGKILAIMGL 346 (458)
T ss_pred hcCCC-chHHHHHHHHHHHHHHh-------------------------------------------cCCCCHHHHHHHHH
Confidence 00000 12234455555555555 45566666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH-HhhcCCHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL-ELKNDDWVKA 284 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A 284 (760)
++...++++.|+..|++++.++|+.+.+|+..|.+....|+.++|+..+++++.++|.-..+-...-.+ .+-..-.+.|
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNN 426 (458)
T ss_pred HHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhh
Confidence 666666666677777777766777777777777766667777777777777776666655443333333 2333345666
Q ss_pred HHHHHHh
Q 004339 285 KETFRAA 291 (760)
Q Consensus 285 ~~~~~~a 291 (760)
+.+|-+-
T Consensus 427 ~~~~~~~ 433 (458)
T PRK11906 427 IKLYYKE 433 (458)
T ss_pred HHHHhhc
Confidence 6665443
No 183
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=8.4e-07 Score=89.27 Aligned_cols=129 Identities=15% Similarity=0.167 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCChHHHHHH
Q 004339 305 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS---------------NLYAANGAGVVLAEKGQFDVSKDL 369 (760)
Q Consensus 305 ~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~ 369 (760)
..|+. |++. |+|..|...|++++..-+. -..++++++.|+.+++.|..|+..
T Consensus 213 e~Gn~-~fK~------------gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~ 279 (397)
T KOG0543|consen 213 ERGNV-LFKE------------GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES 279 (397)
T ss_pred HhhhH-HHhh------------chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence 45677 8888 9999999999998875331 133789999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHH-HHHHHHH
Q 004339 370 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC-KKSLLRA 448 (760)
Q Consensus 370 ~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a 448 (760)
..+++...| .++.+++..|.++..+|+|+.|+..|+++++. .|.|..+...|..|-.+...+... .+.|..+
T Consensus 280 c~kvLe~~~-----~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 280 CNKVLELDP-----NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHhcCC-----CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 88999999999999999999999999999997 788888888998888887776654 7888888
Q ss_pred HHhCC
Q 004339 449 IHLAP 453 (760)
Q Consensus 449 l~~~p 453 (760)
+..-+
T Consensus 353 F~k~~ 357 (397)
T KOG0543|consen 353 FAKLA 357 (397)
T ss_pred hhccc
Confidence 87655
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.62 E-value=2.2e-05 Score=74.77 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=90.5
Q ss_pred CccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh
Q 004339 189 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD---AYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 265 (760)
Q Consensus 189 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 265 (760)
.....|-...+.+.++.++++.++++.|+..+.+.+.++|.++. +++..|.+++..
T Consensus 63 ~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~--------------------- 121 (254)
T COG4105 63 RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ--------------------- 121 (254)
T ss_pred cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc---------------------
Confidence 33455666789999999999999999999999999999987654 344444442211
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC
Q 004339 266 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 345 (760)
+-.......-...|+..|...+...|+ ..++--....+.++. .++.
T Consensus 122 -----i~~~~rDq~~~~~A~~~f~~~i~ryPn-S~Ya~dA~~~i~~~~-----------------d~LA----------- 167 (254)
T COG4105 122 -----IDDVTRDQSAARAAFAAFKELVQRYPN-SRYAPDAKARIVKLN-----------------DALA----------- 167 (254)
T ss_pred -----CCccccCHHHHHHHHHHHHHHHHHCCC-CcchhhHHHHHHHHH-----------------HHHH-----------
Confidence 000111111234455555666666655 222222111110111 0111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 409 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (760)
.-=..+|..|.+.|.+-.|+.-++.+++..|... ....++..+..+|..+|-.++|...-
T Consensus 168 --~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~--~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 168 --GHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS--AVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred --HHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc--chHHHHHHHHHHHHHhCChHHHHHHH
Confidence 1112356666666666666666666666655221 23456666666666677666665543
No 185
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=0.0012 Score=67.89 Aligned_cols=135 Identities=21% Similarity=0.264 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHc--cCCHhHHHHHHHHHHHHHHhcCCC--C
Q 004339 48 CETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRD---AQAFIDLGELLI--SSDTGAALDAFKTARTLLKKAGEE--V 118 (760)
Q Consensus 48 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~--~~~~~~A~~~~~~al~~~~~~~~~--~ 118 (760)
+.+++.+|..+...| ++..++.+++..+...|.+ +...+.+|.++. ..+++.|...++++..+....+.. .
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 467888999999999 9999999999999887764 456788888766 569999999999998876554321 2
Q ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchH
Q 004339 119 PIEVLNNIGVIHFEKG-EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 197 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ 197 (760)
...+...|+.+|.... .+..|...+.+++.+... ..--..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~---------------------------------------~p~wsc 127 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS---------------------------------------VPYWSC 127 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC---------------------------------------CchhhH
Confidence 3567788899998887 889999999999874321 111234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYR 221 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~ 221 (760)
...+.|+.++.-..++..|++.+.
T Consensus 128 kllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 128 KLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHHHHHHhhhccchhHHHHHh
Confidence 577889999999999999998844
No 186
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.60 E-value=0.001 Score=70.79 Aligned_cols=119 Identities=12% Similarity=0.163 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc--cCCHhHHHHHHHHH
Q 004339 30 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI--SSDTGAALDAFKTA 107 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~~~~~A~~~~~~a 107 (760)
...+...|...|...|-....|...|..-.+.|....++..|++++.--|.....|..+..... .|+...-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3566777888888899999999999999999999999999999999999999999988777665 46888888899999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q 004339 108 RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 150 (760)
Q Consensus 108 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 150 (760)
....... -.....|-........++++..-..+|++.+...
T Consensus 141 ~~~vG~d--F~S~~lWdkyie~en~qks~k~v~~iyeRileiP 181 (577)
T KOG1258|consen 141 KSYVGLD--FLSDPLWDKYIEFENGQKSWKRVANIYERILEIP 181 (577)
T ss_pred HHhcccc--hhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh
Confidence 8876543 1124567667777788899999999999998853
No 187
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.59 E-value=2.3e-08 Score=96.73 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=100.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHH
Q 004339 123 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 202 (760)
Q Consensus 123 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 202 (760)
+-..|.-|+.+|.|++|+.||.+++. ..|.++..+.+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia-------------------------------------------~~P~NpV~~~N 136 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIA-------------------------------------------VYPHNPVYHIN 136 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhc-------------------------------------------cCCCCccchhh
Confidence 45678999999999999999999987 67788899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 203 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.|.+|+++..|..|..-+..++.++..+..+|.+.+.+-..+|...+|...++.+|.+.|++.++.-.++.+
T Consensus 137 RA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 137 RALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999988776666555
No 188
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.57 E-value=0.00032 Score=69.99 Aligned_cols=297 Identities=14% Similarity=0.078 Sum_probs=211.9
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.|+-..|...-.++-++...+. .+-++..-+..-...|+++.|.+-|+.++.
T Consensus 97 AGda~lARkmt~~~~~llssDq---epLIhlLeAQaal~eG~~~~Ar~kfeAMl~------------------------- 148 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQ---EPLIHLLEAQAALLEGDYEDARKKFEAMLD------------------------- 148 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccc---hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-------------------------
Confidence 5788888888888876665542 245666667888888999999999998875
Q ss_pred HHhHHhhhhhhccCCCccCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNK-VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
+|.. ...+..|-.--...|..+.|+.+-..+....|....++...-...+..|+++.|+.
T Consensus 149 -------------------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 149 -------------------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred -------------------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence 2211 11122222333467999999999999999999999888888888899999999999
Q ss_pred HHHHHHHH---cCCChH-----HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchH
Q 004339 253 LVNEALKV---NGKYPN-----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 324 (760)
Q Consensus 253 ~~~~al~~---~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~ 324 (760)
+++..... .++-.+ ++...+... -.-+...|...-..++++.|. ....-..-+.. ++..
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pd-lvPaav~AAra-lf~d---------- 276 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPD-LVPAAVVAARA-LFRD---------- 276 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCc-cchHHHHHHHH-HHhc----------
Confidence 98876543 232222 222222222 233588899999999999887 45555555666 7877
Q ss_pred HhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 004339 325 EATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 325 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 404 (760)
|+..++-.+++.+-+..|+-. ++.+|....--+.++.-++++-.+.. ..|++....+..+...+.-|+|..
T Consensus 277 --~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ 347 (531)
T COG3898 277 --GNLRKGSKILETAWKAEPHPD-----IALLYVRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSA 347 (531)
T ss_pred --cchhhhhhHHHHHHhcCCChH-----HHHHHHHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHH
Confidence 999999999999999988532 34445544444455555655554432 112788999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCChhHHhhHHH
Q 004339 405 AMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQWQDCKKSLLRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 405 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~ 464 (760)
|..--+.+... .+...++..|+.+-... |+-.++..++-+++.- |.+| .|...+.
T Consensus 348 ARa~Aeaa~r~---~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A-PrdP-aW~adg~ 403 (531)
T COG3898 348 ARAKAEAAARE---APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA-PRDP-AWTADGV 403 (531)
T ss_pred HHHHHHHHhhh---CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC-CCCC-cccccCc
Confidence 99988888874 34567888888888776 9999999999999864 5444 3444444
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.57 E-value=3.2e-07 Score=72.03 Aligned_cols=71 Identities=32% Similarity=0.401 Sum_probs=65.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
+..+|+..++|+.|+.++++++..+|.++..|+.+|.++..+|++.+|+..|++++...|+++.+....+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999998887665543
No 190
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.54 E-value=5.2e-08 Score=94.30 Aligned_cols=236 Identities=11% Similarity=-0.041 Sum_probs=170.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
+-..|..|+.+|.|++|+.+|.+.+..+|.++..+.+.|.+|++...+..|...+..++.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHH--------
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN-------- 351 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-------- 351 (760)
...+|...++.++.+.|. ....--.++.+ ..+.++ .-+.+..|....+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~-~~ELkK~~a~i-----------------~Sl~E~----~I~~KsT~G~~~A~Q~~~Q~l~~ 237 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK-NIELKKSLARI-----------------NSLRER----KIATKSTPGFTPARQGMIQILPI 237 (536)
T ss_pred hHHHHHHhHHHHHhhCcc-cHHHHHHHHHh-----------------cchHhh----hHHhhcCCCCCccccchhhhccc
Confidence 999999999999999887 33333333332 111111 011111222222221
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 004339 352 -GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 430 (760)
Q Consensus 352 -~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 430 (760)
.-|..+...|.+..++.+|..-+.... .+.....+ +..|...-++..|+...-+++.. .+.-.......|.
T Consensus 238 K~~G~~Fsk~~~~~~~i~~~~~~~A~~~-----~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~--~~s~~~~~s~~~~ 309 (536)
T KOG4648|consen 238 KKPGYKFSKKAMRSVPVVDVVSPRATID-----DSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP--KPTPMPDTSGPPK 309 (536)
T ss_pred cCcchhhhhhhccccceeEeeccccccC-----ccccCccc-HHHHHHHhhcchhHHHHHHhcCC--CCCcCcccCCCch
Confidence 235566777888888888877665543 22222223 66777778888898888777764 3333333444444
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 431 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 431 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+---.|...++...++.++.+.|.+....-.+..+
T Consensus 310 A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~ 344 (536)
T KOG4648|consen 310 AETIAKTSKEVKPTKQTAVKVAPAVETPKETETRK 344 (536)
T ss_pred hHHHHhhhhhcCcchhheeeeccccccchhhhhhh
Confidence 55556777889999999999999886665554443
No 191
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.54 E-value=1.7e-06 Score=90.15 Aligned_cols=128 Identities=22% Similarity=0.271 Sum_probs=110.9
Q ss_pred CCCchhhhh--HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 11 HEFIFPYYG--LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 11 p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
|+....++. +...+...++++.|+.+|++....+|. +...++.++...++..+|+.++.+++...|.+...+...
T Consensus 164 ~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q 240 (395)
T PF09295_consen 164 PTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ 240 (395)
T ss_pred CCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 444444443 334455678999999999999988765 667799999999999999999999999999999999999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 146 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 146 (760)
+..+. .++++.|+.+.++++.+.|.. ...|+.|+.+|...|+++.|+..++.+
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~-----f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSE-----FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99888 779999999999999999997 899999999999999999999887754
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.50 E-value=3.5e-06 Score=87.79 Aligned_cols=125 Identities=13% Similarity=0.100 Sum_probs=111.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHH
Q 004339 123 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 202 (760)
Q Consensus 123 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 202 (760)
.-.|-.++...++++.|+..|+++.. .+ +.+...
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~-------------------------------------------~~---pev~~~ 205 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRE-------------------------------------------RD---PEVAVL 205 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHh-------------------------------------------cC---CcHHHH
Confidence 34445556667899999999999876 22 346777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHH
Q 004339 203 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 282 (760)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 282 (760)
+++++...++..+|+.++.+++...|.+...+...+..+...++++.|+.+.++++...|.....|+.|+.+|...|+++
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 004339 283 KAKETFRAASD 293 (760)
Q Consensus 283 ~A~~~~~~al~ 293 (760)
.|+..+..+--
T Consensus 286 ~ALlaLNs~Pm 296 (395)
T PF09295_consen 286 NALLALNSCPM 296 (395)
T ss_pred HHHHHHhcCcC
Confidence 99998885543
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.49 E-value=0.0015 Score=65.43 Aligned_cols=281 Identities=15% Similarity=0.021 Sum_probs=201.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHH
Q 004339 125 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 204 (760)
Q Consensus 125 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la 204 (760)
..|.+-...|+-..|...-.++-.+- .....+.++..-+
T Consensus 89 StGliAagAGda~lARkmt~~~~~ll-----------------------------------------ssDqepLIhlLeA 127 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLL-----------------------------------------SSDQEPLIHLLEA 127 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhh-----------------------------------------hccchHHHHHHHH
Confidence 34667777889999998888775420 1112455677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHH
Q 004339 205 RLLEQIHDTVAASVLYRLILFKYQDYVD-AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 283 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 283 (760)
..-...|+++.|.+-|+.++. +|..-. .+..|-.-....|..+.|+.+...+....|.-+-++...-...+..|+|+.
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHH
Confidence 888889999999999999886 443221 122222333578999999999999999999999988888888899999999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 004339 284 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 363 (760)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 363 (760)
|+++........--....+-...+.+.-....... ..+...|...-..++++.|+...+...-+..|+..|+.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-------dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~ 279 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-------DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNL 279 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-------cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch
Confidence 99999776553211111121122222011110000 15688899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-cCCCcHHHHHHHHHHHHHhccHHHHH
Q 004339 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-YYNTDAQILLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 364 ~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~la~~~~~~g~~~~A~ 442 (760)
.++-.+++.+.+..|+ |.+ +.+|....--+.++.-++++-.+- -.|++.+..+.++..-+..|++..|.
T Consensus 280 rKg~~ilE~aWK~ePH------P~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 280 RKGSKILETAWKAEPH------PDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred hhhhhHHHHHHhcCCC------hHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 9999999999999872 443 344444444455666666554432 26778999999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHhhHHHH
Q 004339 443 KSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 443 ~~~~~al~~~p~~~~~~~~la~~ 465 (760)
..-+.+....|... ++.-|+-|
T Consensus 350 a~Aeaa~r~~pres-~~lLlAdI 371 (531)
T COG3898 350 AKAEAAAREAPRES-AYLLLADI 371 (531)
T ss_pred HHHHHHhhhCchhh-HHHHHHHH
Confidence 99999999998653 33334443
No 194
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.48 E-value=0.00074 Score=68.67 Aligned_cols=429 Identities=10% Similarity=0.049 Sum_probs=245.0
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
..|+.+|+++..||.+.+.+-.+|.+++-.+.|++.....|--+.+|......-+..++|..-..+|-+++...- +.+.
T Consensus 33 erIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~ldL 111 (660)
T COG5107 33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NLDL 111 (660)
T ss_pred HHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cHhH
Confidence 457889999999999999999999999999999999998888888888777766667888888888888886543 3444
Q ss_pred HHHHHHHHc-cC-C-HhHHH----HHHHHHHH---HHHhcCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHH
Q 004339 85 FIDLGELLI-SS-D-TGAAL----DAFKTART---LLKKAGEEVPIEVLNNIGVIHFE---------KGEFESAHQSFKD 145 (760)
Q Consensus 85 ~~~la~~~~-~~-~-~~~A~----~~~~~al~---~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~ 145 (760)
|..+-.... .+ . ..++. +.|+-++. ..|.. ...|...+..+.. +.+.+.-...|.+
T Consensus 112 W~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s-----~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 112 WMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQS-----ENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred HHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccc-----cchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 443322211 11 0 11222 22332222 23333 4566666655433 3456667777888
Q ss_pred Hhcccch-hhhhcccchhhh--hhhh--------hHHHHHHhHHhhhhhhccCCCcc-CCcchH-----------HHHHH
Q 004339 146 ALGDGIW-LTLLDSKTKTYV--IDAS--------ASMLQFKDMQLFHRFENDGNHVE-LPWNKV-----------TVLFN 202 (760)
Q Consensus 146 al~~~p~-~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~l~~~~~~~~-~~p~~~-----------~~~~~ 202 (760)
++..... ..-+......+. ++.. .+.+-...-..++.+.....-+. .+|.+. .-|.+
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 8765321 000111000000 0000 00000111112222221111111 111111 11222
Q ss_pred HHHHHHH-----cCC-HH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 203 LARLLEQ-----IHD-TV-AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 203 la~~~~~-----~g~-~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
....-.. .|+ .. .---.|++++...|-.+..|+.....+...++-+.|+.....++...|. +...++.+|
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~y 343 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYY 343 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHH
Confidence 2221111 111 22 2223466777777888888998888888899999998888777665554 667777777
Q ss_pred hhcCCHHHHHHHHHHhhh-------cCC-----C--C----ChHHH------HHHHHHHHHHHHhhhhcCchHHhhcHHH
Q 004339 276 LKNDDWVKAKETFRAASD-------ATD-----G--K----DSYAT------LSLGNWNYFAALRNEKRAPKLEATHLEK 331 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al~-------~~~-----~--~----~~~~~------~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 331 (760)
...++-+....+|.+++. ... + + ....+ +.++.|++...++.. .-...
T Consensus 344 el~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~--------~Gl~a 415 (660)
T COG5107 344 ELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRK--------RGLEA 415 (660)
T ss_pred hhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHH--------hhHHH
Confidence 766665555555554433 100 0 0 11111 111111122221111 44677
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 332 AKELYTRVIVQHTSNLYAANGAGVV-LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 410 (760)
Q Consensus 332 A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (760)
|..+|-++-+..--...++..-|.+ +...|++.-|..+|.-.+...| +.+......-..++..++-..|..+|+
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~-----d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFP-----DSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCC-----CchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 7777777655431222223222322 3467889999999999888887 666666667777888899999999999
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 411 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 411 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
+++.......-..+|-.+-..-..-|+...+...=++...+.|..
T Consensus 491 tsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 491 TSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 888865333335556555555566788888887778888888765
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.47 E-value=6.8e-06 Score=71.34 Aligned_cols=111 Identities=12% Similarity=0.169 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHH
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 424 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 424 (760)
.+..++.-|...+..|+|..|+..|+.+....|.+. -...+.+.||.+|+..|+|+.|+..+++.+.+.|.+++ ..+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~--ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE--YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 455778888888999999999999999999988443 34678899999999999999999999999998766555 788
Q ss_pred HHHHHHHHHHhcc---------------HHHHHHHHHHHHHhCCCChhH
Q 004339 425 LLYLARTHYEAEQ---------------WQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 425 ~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 458 (760)
++..|.+++.+.. ...|...|++.+...|++..+
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8899999998876 788999999999999987543
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.47 E-value=3.8e-06 Score=71.85 Aligned_cols=96 Identities=20% Similarity=0.105 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---ChHHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK---YPNALSML 271 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 271 (760)
.++|.+|.++-..|+.++|+.+|++++..... ...+++.+|..+..+|++++|+.+++.++..+|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 57899999999999999999999999987543 3568999999999999999999999999999998 77888999
Q ss_pred HHHHhhcCCHHHHHHHHHHhhh
Q 004339 272 GDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~ 293 (760)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999877664
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.44 E-value=5.3e-06 Score=72.02 Aligned_cols=87 Identities=14% Similarity=0.006 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
++..++.-|...+..|+|..|+..|+.+....| ..+-...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP----------------------------------------~g~ya~q 48 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYP----------------------------------------FGEYAEQ 48 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC----------------------------------------CCcccHH
Confidence 455666666666666666666666666655433 3334455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHcC
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYV---DAYLRLAAIAKARN 245 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g 245 (760)
+.+.++.+|+..++++.|+..+++.++++|.++ .+++..|.+++...
T Consensus 49 AqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 49 AQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666443 34555555555443
No 198
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.44 E-value=5.4e-06 Score=79.74 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
.-.|..|.-++..|+|..|...|...++..| ..+..+.++
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP----------------------------------------~s~~~~nA~ 181 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYP----------------------------------------NSTYTPNAY 181 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------------------------------------CCcccchhH
Confidence 4478899999999999999999999998665 445567899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
|+||.+++.+|+|+.|...|..+++.+|. -+++++.||.+...+|+.++|..+|.++++.+|+...+....
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999988764 568899999999999999999999999999999987765543
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.44 E-value=7.4e-07 Score=68.79 Aligned_cols=66 Identities=23% Similarity=0.164 Sum_probs=52.4
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 208 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 208 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
...|++++|+.+|++++..+|++..+++.+|.++...|++++|..++.+++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456788888888888888888888888888888888888888888888888888887777766664
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.42 E-value=4e-05 Score=68.34 Aligned_cols=148 Identities=12% Similarity=0.128 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHH
Q 004339 281 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV-QHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 281 ~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~ 359 (760)
.+....-..+.+...| .....+.|++. .... |++.+|...|.+++. +..+++..+.+++...+.
T Consensus 72 P~R~~Rea~~~~~~Ap--Tvqnr~rLa~a-l~el------------Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa 136 (251)
T COG4700 72 PERHLREATEELAIAP--TVQNRYRLANA-LAEL------------GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA 136 (251)
T ss_pred hhHHHHHHHHHHhhch--hHHHHHHHHHH-HHHh------------hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh
Confidence 3333333444444444 23344566666 6666 888888888887765 456677788888888888
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHH
Q 004339 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ 439 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 439 (760)
.+++..|...++...+..|.. ..|+..+.+|.+|..+|.+.+|...|+.++..+ +.+......+..+.++|+..
T Consensus 137 ~~~~A~a~~tLe~l~e~~pa~---r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 137 IQEFAAAQQTLEDLMEYNPAF---RSPDGHLLFARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLR 210 (251)
T ss_pred hccHHHHHHHHHHHhhcCCcc---CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchh
Confidence 888888888888888887733 456777888888888888888888888888854 55667777788888888877
Q ss_pred HHHHHHHHHH
Q 004339 440 DCKKSLLRAI 449 (760)
Q Consensus 440 ~A~~~~~~al 449 (760)
+|..-+....
T Consensus 211 ea~aq~~~v~ 220 (251)
T COG4700 211 EANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHH
Confidence 7766555443
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.00033 Score=66.18 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCChHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q 004339 214 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAAS 292 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (760)
+..+..+++-+. .+.+.++.++.-.+.|.-++..+.++++.+ |..+.....+|.+.++.|+.+.|..+|+.+-
T Consensus 166 ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 166 ESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred hhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444445544332 345566666677777777777777777766 5566677777777777777777777777544
Q ss_pred hcCC-----CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004339 293 DATD-----GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 367 (760)
Q Consensus 293 ~~~~-----~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 367 (760)
+... .....+..+.+.+ |... +++..|...|.+++..+|.++.+.++.|.|+.-.|+...|+
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 3211 1133444555555 6666 88899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 004339 368 DLFTQVQEAASGS 380 (760)
Q Consensus 368 ~~~~~al~~~p~~ 380 (760)
+.+..++...|+.
T Consensus 307 K~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 307 KQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHhccCCcc
Confidence 9999999998854
No 202
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.41 E-value=9.4e-07 Score=70.37 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=56.5
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-c----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
....++.++|.+|..+|+|++|+.+|++++......+ + +.++.++|.+|..+|++++|+.+|++++.+.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5677889999999999999999999999998742211 1 6778899999999999999999999998763
No 203
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=2.7e-06 Score=76.47 Aligned_cols=114 Identities=12% Similarity=0.143 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+-.-|.-++..|+|.+|..-|..++.+.|..........|.+.|.++++++.+..|+..+.+++.+ .|....++...|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRA 175 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRA 175 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHH
Confidence 334577888999999999999999999984332234567889999999999999999999999997 778888999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
.+|.++..|+.|+..|.+.++++|....++-.++.+
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999999999999988777666554
No 204
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=4.8e-06 Score=74.93 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+..+-.-|.-++..|.|.+|..-|..+|..||... .......
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~--------------------------------------~e~rsIl 136 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS--------------------------------------TEERSIL 136 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc--------------------------------------HHHHHHH
Confidence 34455668889999999999999999999887321 1123457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
|.+.|.++..++.++.|+..+.+++.++|.+..++.+.|.+|.+...|+.|+..|.+++..+|....+.-.++.+
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 788999999999999999999999999999999999999999999999999999999999999887766655554
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.34 E-value=7.6e-05 Score=66.64 Aligned_cols=150 Identities=16% Similarity=0.130 Sum_probs=126.8
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
-+++..+.-..+.+.+.|. ..-.+.||..+...|++.+|...|.+++.-
T Consensus 70 ldP~R~~Rea~~~~~~ApT------vqnr~rLa~al~elGr~~EA~~hy~qalsG------------------------- 118 (251)
T COG4700 70 LDPERHLREATEELAIAPT------VQNRYRLANALAELGRYHEAVPHYQQALSG------------------------- 118 (251)
T ss_pred cChhHHHHHHHHHHhhchh------HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------------------------
Confidence 3666666666677777776 477889999999999999999999999862
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHcCCHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD--YVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
....++..+..+++..+..+++..|...++.+.+.+|. .++..+.+|..+...|.+.+|..
T Consensus 119 -----------------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 119 -----------------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAES 181 (251)
T ss_pred -----------------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHH
Confidence 45568889999999999999999999999999998873 56778899999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 004339 253 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 253 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (760)
.|+.++...|. +.+....+..+..+|+..+|...+..+.+
T Consensus 182 afe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 182 AFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999998875 67778888999999988888776655544
No 206
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.33 E-value=3e-05 Score=80.73 Aligned_cols=106 Identities=14% Similarity=0.111 Sum_probs=91.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 004339 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 433 (760)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 433 (760)
|..+...|+...|+.++..++...|. .......+||.+.+..|-...|-.++.+++.+ ....+-.++.+|++|+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~----~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--~~sepl~~~~~g~~~l 687 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPL----QQDVPLVNLANLLIHYGLHLDATKLLLQALAI--NSSEPLTFLSLGNAYL 687 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChh----hhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--cccCchHHHhcchhHH
Confidence 44444789999999999999999884 23345789999999999999999999999997 3566889999999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 434 EAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 434 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
.+.+.+.|++.|+.|+.+.|+++.+...|-.+
T Consensus 688 ~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 688 ALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999999999887766554
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.32 E-value=3.5e-06 Score=66.04 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=57.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 204 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
..+|...++++.|+.+++.++..+|.++..+..+|.++...|++.+|+..|++++...|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5677888888888888888888888888888888888888888888888888888888888776665543
No 208
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.29 E-value=0.015 Score=66.12 Aligned_cols=394 Identities=17% Similarity=0.131 Sum_probs=219.0
Q ss_pred chhhhhHHHHHH-HcCCHHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cH-
Q 004339 14 IFPYYGLGQVQL-KLGDFRSALTNFEKVLEIYPD--N----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---DA- 82 (760)
Q Consensus 14 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~- 82 (760)
+.+++.+|.+++ ...+++.|..++.+++.+... . ..+.+.++.++.+.+... |+..+.+++..... ..
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 456788888887 678888888888888776533 2 234556677777777666 88888888765433 11
Q ss_pred HHHHHHH--HHHcc-CCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcc
Q 004339 83 QAFIDLG--ELLIS-SDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 158 (760)
Q Consensus 83 ~~~~~la--~~~~~-~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 158 (760)
...+.+. .++.. +++..|+..++.........+++. ...+....+.++...+....++..+..+.....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~------- 210 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQAR------- 210 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh-------
Confidence 1122222 22222 588888888888877654322111 122334446666677777888888877754210
Q ss_pred cchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HHH---cC--
Q 004339 159 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR--LLEQIHDTVAASVLYRLI---LFK---YQ-- 228 (760)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~~---l~~---~p-- 228 (760)
.+ ...... .+....++..+-. ++...|++..+...+..+ +.. .|
T Consensus 211 -----------------------~~-q~~~~~--~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w 264 (608)
T PF10345_consen 211 -----------------------SL-QLDPSV--HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSW 264 (608)
T ss_pred -----------------------hc-ccCCCC--CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccC
Confidence 00 001111 2223334444333 445567766665544433 221 11
Q ss_pred -C---------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC----------C
Q 004339 229 -D---------------------------------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK----------Y 264 (760)
Q Consensus 229 -~---------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------~ 264 (760)
. ..-+|+.-|......+..+.|..++.+++..-.. .
T Consensus 265 ~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~ 344 (608)
T PF10345_consen 265 PSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSE 344 (608)
T ss_pred CCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 0 0112333344456667666888888777754211 0
Q ss_pred ----------------hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC---C-----CChHHHHHHHHHHHHHHHhhhhc
Q 004339 265 ----------------PNALSMLGDLELKNDDWVKAKETFRAASDATD---G-----KDSYATLSLGNWNYFAALRNEKR 320 (760)
Q Consensus 265 ----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~-----~~~~~~~~lg~~~y~~~~~~~~~ 320 (760)
..+....+.+.+..++|..|...+..+..... . ..+..++..|.. +...
T Consensus 345 sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~-~q~~------ 417 (608)
T PF10345_consen 345 SLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLY-YQST------ 417 (608)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH-HHHc------
Confidence 01344667777888999999999887776421 1 135666677776 6666
Q ss_pred CchHHhhcHHHHHHHHH--------HHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH-HhcCCC-C-CCch
Q 004339 321 APKLEATHLEKAKELYT--------RVIVQHTSN---LYAANGAGVVLAEKGQFDVSKDLFTQVQE-AASGSV-F-VQMP 386 (760)
Q Consensus 321 ~~~~~~~~~~~A~~~~~--------~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~-~-~~~~ 386 (760)
|+++.|...|. .+....+.+ ..+..++..++...+.-......+..++. +.|... . ..+.
T Consensus 418 ------g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~ 491 (608)
T PF10345_consen 418 ------GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYN 491 (608)
T ss_pred ------CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHH
Confidence 99999999998 444444443 23555667777655543332212233332 333110 0 0111
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHhhh-cCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 387 DVWINLAHVYFA---QGNFALAMKMYQNCLRKF-YYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 387 ~~~~~la~~~~~---~g~~~~A~~~~~~al~~~-~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
..+..+...-+. .-.+.++...+..+++.. ....+ ..++..++..++ .|+..+.......++.+.+..
T Consensus 492 ~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 492 RTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred HHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh
Confidence 222222111121 123458888888888875 22233 445667777777 788888777766677665443
No 209
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.29 E-value=0.00031 Score=78.28 Aligned_cols=271 Identities=18% Similarity=0.170 Sum_probs=187.6
Q ss_pred chHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQI-----HDTVAASVLYRLILFK-----YQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALK 259 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~ 259 (760)
.+..+.+.+|.+|..- .+.+.|+.+|..+... .-.++.+.+.+|.+|.... ++..|+.+|.++-.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 4667788888887764 6899999999999761 1125567889999998753 67789999998876
Q ss_pred HcCCChHHHHHHHHHHhhcC---CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHH
Q 004339 260 VNGKYPNALSMLGDLELKND---DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 336 (760)
Q Consensus 260 ~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 336 (760)
. .++.+.+.+|.++.... ++..|..+|..+.... ...+.+.++.+ |....... .+...|..+|
T Consensus 322 ~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~-y~~G~gv~--------r~~~~A~~~~ 387 (552)
T KOG1550|consen 322 L--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALC-YELGLGVE--------RNLELAFAYY 387 (552)
T ss_pred c--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHH-HHhCCCcC--------CCHHHHHHHH
Confidence 5 46778888999887765 5789999999998764 67788888888 65541111 5889999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 004339 337 TRVIVQHTSNLYAANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG----NFALAMKMYQN 411 (760)
Q Consensus 337 ~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 411 (760)
.++.... ++.+...++.++... +.+..+...+.......-... ..+...+........... +...+...+.+
T Consensus 388 k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~-q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (552)
T KOG1550|consen 388 KKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVA-QSNAAYLLDQSEEDLFSRGVISTLERAFSLYSR 464 (552)
T ss_pred HHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHH-hhHHHHHHHhccccccccccccchhHHHHHHHH
Confidence 9999987 566666666666533 888887777766665532000 011111111111111111 55666777766
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHH
Q 004339 412 CLRKFYYNTDAQILLYLARTHYEA----EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRST 487 (760)
Q Consensus 412 al~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a 487 (760)
+.. ..++.+...||.+|+.- .++..|...|.+|.... ....+++|.++.. |. ..
T Consensus 465 a~~----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~-g~--------------g~ 522 (552)
T KOG1550|consen 465 AAA----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEH-GE--------------GI 522 (552)
T ss_pred HHh----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhc-Cc--------------Cc
Confidence 655 36788999999999875 45899999999998887 8899999997643 21 11
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 004339 488 VAELENAVRVFSHLSAAS 505 (760)
Q Consensus 488 ~~~l~~A~~~~~~l~~~~ 505 (760)
.. +..|.+++...+..+
T Consensus 523 ~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 523 KV-LHLAKRYYDQASEED 539 (552)
T ss_pred ch-hHHHHHHHHHHHhcC
Confidence 22 566667777666654
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.28 E-value=2.9e-06 Score=87.58 Aligned_cols=71 Identities=23% Similarity=0.189 Sum_probs=64.2
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET---LKALGHIYVQLGQIEKAQELLRKAAKID 78 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 78 (760)
..+|+++.+++++|.+|+..|+|++|+.+|++++.++|++..+ |+++|.+|..+|++++|+.+|++++.+.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999999999998854 9999999999999999999999999873
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.27 E-value=1.1e-06 Score=69.99 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004339 344 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 344 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 416 (760)
|.-..++.++|.+|...|++++|+.+|++++.+.. +...+..+.++.++|.++..+|++++|+.+|+++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34467899999999999999999999999998732 22222447789999999999999999999999999864
No 212
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.26 E-value=0.011 Score=63.32 Aligned_cols=321 Identities=10% Similarity=0.084 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 004339 64 IEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI-HFEKGEFESAHQ 141 (760)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~ 141 (760)
...+...|...+...|.....|...|..-. .|....++..|++++.-.|-+ ..+|..+-.. -...|+...-..
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-----vdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-----VDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHhccCCCHHHHHH
Confidence 466777788888889999999999998866 789999999999999999975 6777655443 334577778778
Q ss_pred HHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 142 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 221 (760)
Q Consensus 142 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 221 (760)
.|++|..... .+-.....|-.+......++++..-..+|.
T Consensus 136 ~fe~A~~~vG----------------------------------------~dF~S~~lWdkyie~en~qks~k~v~~iye 175 (577)
T KOG1258|consen 136 LFERAKSYVG----------------------------------------LDFLSDPLWDKYIEFENGQKSWKRVANIYE 175 (577)
T ss_pred HHHHHHHhcc----------------------------------------cchhccHHHHHHHHHHhccccHHHHHHHHH
Confidence 8888876321 111122333333344455556666666666
Q ss_pred HHHHHcCCcHHHHHHHHHHHHH------cCCHHHHHHHHHHHHH-------------------H--cCC--ChHHH----
Q 004339 222 LILFKYQDYVDAYLRLAAIAKA------RNNLQLSIELVNEALK-------------------V--NGK--YPNAL---- 268 (760)
Q Consensus 222 ~~l~~~p~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~-------------------~--~p~--~~~~~---- 268 (760)
++++..-.....++..-.-+.. ....++++..-..... . .|. .....
T Consensus 176 RileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~ 255 (577)
T KOG1258|consen 176 RILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILK 255 (577)
T ss_pred HHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHH
Confidence 6665322111111111000000 1111111111111110 0 000 00011
Q ss_pred ---HHHHHHHhhcCCHHHHHHHHHHhhhcCC-CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 269 ---SMLGDLELKNDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 269 ---~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
...-.++.....+...+-.|+..+...- ...+.....+.++.++.-. ....|+++...-.|++++--..
T Consensus 256 ~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf-------~i~~g~~~~~~~l~ercli~cA 328 (577)
T KOG1258|consen 256 RIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDF-------EITLGDFSRVFILFERCLIPCA 328 (577)
T ss_pred HHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhh-------hhhcccHHHHHHHHHHHHhHHh
Confidence 0111122222334444444444443210 0011112222222111100 0011666667777776666666
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHH
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 424 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 424 (760)
.....|...+......|+..-|...+..+.++.- +..+.+.+.-+.+--..|++..|..+|+++...+ |+...+
T Consensus 329 ~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~----k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~ 402 (577)
T KOG1258|consen 329 LYDEFWIKYARWMESSGDVSLANNVLARACKIHV----KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEV 402 (577)
T ss_pred hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC----CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--Cchhhh
Confidence 6666666666666666666666666666655542 1445666666666666666666666666666653 444555
Q ss_pred HHHHHHHHHHhccHHHHH
Q 004339 425 LLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 425 ~~~la~~~~~~g~~~~A~ 442 (760)
-..........|+.+.+.
T Consensus 403 ~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 403 VLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHhHHHHhcchhhhh
Confidence 444455555555555555
No 213
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.25 E-value=0.019 Score=65.36 Aligned_cols=344 Identities=14% Similarity=0.070 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHHCCC----CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCC--CcHH----HHHHHHHHHccCCHh
Q 004339 30 FRSALTNFEKVLEIYPD----NCETLKALGHIYV-QLGQIEKAQELLRKAAKIDP--RDAQ----AFIDLGELLISSDTG 98 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p--~~~~----~~~~la~~~~~~~~~ 98 (760)
...|+.+++-+++..+- .+.+++.+|.+++ ...+++.|..++.+++.+.. +..+ +.+.++.++...+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35678888888853222 3568888999887 67899999999999987763 3332 344567777755555
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhH
Q 004339 99 AALDAFKTARTLLKKAGEEVPIEVLNNI-GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 177 (760)
Q Consensus 99 ~A~~~~~~al~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (760)
.|+..+.+.++.....+......++..+ ...+...+++..|+..++.+.....
T Consensus 117 ~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~-------------------------- 170 (608)
T PF10345_consen 117 AALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN-------------------------- 170 (608)
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh--------------------------
Confidence 5999999999887764322122222222 3333334799999999998876310
Q ss_pred HhhhhhhccCCCccCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----------CCcHHHHHHHHH--HHHHc
Q 004339 178 QLFHRFENDGNHVELPW-NKVTVLFNLARLLEQIHDTVAASVLYRLILFKY----------QDYVDAYLRLAA--IAKAR 244 (760)
Q Consensus 178 ~~~~~l~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----------p~~~~~~~~la~--~~~~~ 244 (760)
. ..+| ....+.+..+.++...+....++.....+.... +....+|..+-. ++...
T Consensus 171 -----------~-~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~ 238 (608)
T PF10345_consen 171 -----------Q-RGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQ 238 (608)
T ss_pred -----------h-cCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 0 0111 122344455677777788888888888775322 223445544443 34567
Q ss_pred CCHHHHHHHHHHH---HHHcCCC--------------------------h-------------HHHHHHHHHHhhcCCHH
Q 004339 245 NNLQLSIELVNEA---LKVNGKY--------------------------P-------------NALSMLGDLELKNDDWV 282 (760)
Q Consensus 245 g~~~~A~~~~~~a---l~~~p~~--------------------------~-------------~~~~~la~~~~~~g~~~ 282 (760)
|++..+...++.+ +....+. + -++..-|...+..+..+
T Consensus 239 ~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ 318 (608)
T PF10345_consen 239 GDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMD 318 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCch
Confidence 7776666555443 2221111 0 02223344444555555
Q ss_pred HHHHHHHHhhhcCCC-------CChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004339 283 KAKETFRAASDATDG-------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 355 (760)
Q Consensus 283 ~A~~~~~~al~~~~~-------~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 355 (760)
.|.+++.+++..... ...... .....-...+.. + .......++.
T Consensus 319 ks~k~~~k~l~~i~~~~~~~~~~~~~sl-----------------------~~~~~~~~~~~~-l-----~~~~~~y~~~ 369 (608)
T PF10345_consen 319 KSEKFLEKALKQIEKLKIKSPSAPSESL-----------------------SEASERIQWLRY-L-----QCYLLFYQIW 369 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcCH-----------------------HHHHHhHHHHHH-H-----HHHHHHHHHH
Confidence 666666666553211 000000 000000000100 0 1235566788
Q ss_pred HHHHcCChHHHHHHHHHHHHHhcCC----CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hhhcCCCc--H
Q 004339 356 VLAEKGQFDVSKDLFTQVQEAASGS----VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL-------RKFYYNTD--A 422 (760)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~~~~~~--~ 422 (760)
+.+-.|++..|...+..+....... .....+.+++..|..+...|+.+.|..+|.+.+ .......+ .
T Consensus 370 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~i 449 (608)
T PF10345_consen 370 CNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYI 449 (608)
T ss_pred HHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHH
Confidence 8889999999999998887764211 011247889999999999999999999998322 21111112 3
Q ss_pred HHHHHHHHHHHHhccHHH
Q 004339 423 QILLYLARTHYEAEQWQD 440 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~ 440 (760)
-+..++..++...+....
T Consensus 450 la~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 450 LAALNLAIILQYESSRDD 467 (608)
T ss_pred HHHHHHHHHhHhhcccch
Confidence 344456666666555433
No 214
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.24 E-value=5.9e-05 Score=63.04 Aligned_cols=101 Identities=19% Similarity=0.107 Sum_probs=87.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc--HHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLY 427 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~ 427 (760)
+-.-|..+...|+.+.|++.|.+++.+.| ..+.+|.+.+..+.-+|+.++|+..+.+++.+...... ..++..
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 34467888899999999999999999999 88999999999999999999999999999998533322 677888
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
.|.+|...|+-+.|...|+.|-++....
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999999999998886543
No 215
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00043 Score=64.36 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=81.0
Q ss_pred HHHHHHHHHH-cCChHHHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-----H
Q 004339 350 ANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----A 422 (760)
Q Consensus 350 ~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~ 422 (760)
+..+|.+|.. +.++++|+.+|+++-+...+.... .....++..|..-..+++|.+|+.+|+++....-+++- .
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 3457777764 488999999999998877532111 12345667777888899999999999998875322221 4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
..++.-|.|++-..+.-.+...+++...++|.....+
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 4566778888888999999999999999999875543
No 216
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.18 E-value=0.00086 Score=74.82 Aligned_cols=277 Identities=21% Similarity=0.211 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHccC----
Q 004339 30 FRSALTNFEKVLEIYPDNCETLKALGHIYVQL-----GQIEKAQELLRKAAKI-----DPRDAQAFIDLGELLISS---- 95 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~---- 95 (760)
...|..+|+.+... .+..+.+.+|.||..- .+.+.|+.+|..+... .-.++.+.+.+|.+|..|
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888887664 5788888999998875 5899999999998761 112566788899998854
Q ss_pred --CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhH
Q 004339 96 --DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG---EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 170 (760)
Q Consensus 96 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 170 (760)
++..|+.+|.++..+.. +.+.+.+|.+|.... ++..|..+|..|...
T Consensus 306 ~~d~~~A~~~~~~aA~~g~-------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--------------------- 357 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGN-------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--------------------- 357 (552)
T ss_pred cccHHHHHHHHHHHHhcCC-------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---------------------
Confidence 46778888888877643 578889999988766 678999999998653
Q ss_pred HHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc-C
Q 004339 171 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI----HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR-N 245 (760)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g 245 (760)
..+.+.+.+|.+|..- .+...|..+|.++...+ .+.+...++.++... +
T Consensus 358 ------------------------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 358 ------------------------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVG 411 (552)
T ss_pred ------------------------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccc
Confidence 4678888999888753 57889999999999877 445555555554332 7
Q ss_pred CHHHHHHHHHHHHHHcCCChH---HH-HHHHHHHhhc----CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhh
Q 004339 246 NLQLSIELVNEALKVNGKYPN---AL-SMLGDLELKN----DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 317 (760)
Q Consensus 246 ~~~~A~~~~~~al~~~p~~~~---~~-~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~ 317 (760)
.+..+...+.......-..+. ++ .......... .+...+...+.++.... +..+.+.+|.+ |+.. ..
T Consensus 412 ~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~-y~~g-~g 486 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDY-YYYG-LG 486 (552)
T ss_pred cccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcce-eeec-CC
Confidence 777776666555443222211 11 1111111111 14455555555554432 66777788888 5543 11
Q ss_pred hhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhc
Q 004339 318 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE----KGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 318 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 378 (760)
.. .++..|...|..+.... ..+.+++|.++.. .. +..|..+|.++.....
T Consensus 487 ~~-------~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 487 TG-------RDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDS 540 (552)
T ss_pred CC-------CChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCc
Confidence 11 56888999999888776 8888899998873 23 6888888888887653
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.17 E-value=0.0019 Score=70.39 Aligned_cols=192 Identities=16% Similarity=0.070 Sum_probs=131.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHH
Q 004339 253 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 332 (760)
Q Consensus 253 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 332 (760)
.|.-++.+-|. ....+..+.--.|+-+.++..+..+.....-..+.+ .+..+.|...+...-.... .......|
T Consensus 179 ~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la--~L~LL~y~~~~~~~~~~~~-~~~~~~~a 252 (468)
T PF10300_consen 179 LFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLA--ALVLLWYHLVVPSFLGIDG-EDVPLEEA 252 (468)
T ss_pred HHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHH--HHHHHHHHHHHHHHcCCcc-cCCCHHHH
Confidence 44455555443 233333334456899999999999877432222222 2222212222111111111 23788999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
..++.......|+....++..|.++...|+.+.|+..|++++..... ...-..-.++.+|+++.-+++|.+|..+|...
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998853320 00022457889999999999999999999999
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHhC
Q 004339 413 LRKFYYNTDAQILLYLARTHYEAEQW-------QDCKKSLLRAIHLA 452 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 452 (760)
++.. .-......|..|-|+...|+. ++|..+|.++-.+.
T Consensus 332 ~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 332 LKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred Hhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 9852 222366667888999999999 77777777765543
No 218
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.6e-05 Score=73.75 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=104.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
+-..|..|+....|..|+.+|.++|.++|..+..|.+.+.|+++..+++.+.....++++++|+.+.+++.+|.++. ..
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 44567888888999999999999999999999999999999999999999999999999999999999999999988 55
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 141 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 141 (760)
.|+.|+..+.++..+......+.-..++..|-.+-...-...++..
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 9999999999999887766544445666666555444444444443
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0006 Score=64.50 Aligned_cols=207 Identities=10% Similarity=0.067 Sum_probs=140.1
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-------------CCc------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-------------QDY------VDAYLRLAAIAKARNNLQLSIELVN 255 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------------p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 255 (760)
.....|...-.++..+..+++|..-+...-..+ |+. .......|.+....|+..+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 345566666677777777777776655543332 110 1223445666677788777765444
Q ss_pred HHHH-------H-----cCCC---------hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHH
Q 004339 256 EALK-------V-----NGKY---------PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314 (760)
Q Consensus 256 ~al~-------~-----~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~ 314 (760)
.... . .|.+ ..+.+.+..++...|.|.-....+.+++..+|..++.....||.+ -++.
T Consensus 147 ~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~-~MQ~ 225 (366)
T KOG2796|consen 147 KLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI-SMQI 225 (366)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH-HHhc
Confidence 3322 1 1111 125567788888889999999999999998877788888888888 7777
Q ss_pred HhhhhcCchHHhhcHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHH
Q 004339 315 LRNEKRAPKLEATHLEKAKELYTRVIVQ------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 388 (760)
Q Consensus 315 ~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 388 (760)
|+.+.|..+|+.+-+. -..+..+..+.+.++.-.+++..|...|.+++..+| .++.+
T Consensus 226 ------------GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-----~~~~a 288 (366)
T KOG2796|consen 226 ------------GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-----RNAVA 288 (366)
T ss_pred ------------ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-----Cchhh
Confidence 8888888888854332 123444566667777777777777777777777776 66777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004339 389 WINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419 (760)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 419 (760)
..+.|.|++..|+...|++.++.++...|.+
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 7777777777777777777777777764433
No 220
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.14 E-value=0.0028 Score=68.21 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=39.1
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004339 25 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 74 (760)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 74 (760)
+..|+|+.|...++. +...|+....|..++.+.+..|+.--|..+|..+
T Consensus 455 id~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred cccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 577899999877665 5678888888999999888888887777777543
No 221
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.11 E-value=0.0002 Score=60.01 Aligned_cols=99 Identities=21% Similarity=0.131 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh----HHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP----NALSMLGDL 274 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~ 274 (760)
.+-..|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-.|+.++|+..+++++++..... .++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 4455677888899999999999999999999999999999999999999999999999999865433 377888999
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCC
Q 004339 275 ELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
|...|+.+.|..-|..+..+..+
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCCH
Confidence 99999999999999988887643
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.10 E-value=1.3e-05 Score=82.88 Aligned_cols=69 Identities=17% Similarity=0.128 Sum_probs=64.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 342 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD---VWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 342 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
.+|+++.+++++|.+|...|+|++|+.+|+++++++| +++. +|+++|.+|..+|++++|+..|++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-----d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP-----NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999 6664 5999999999999999999999999996
No 223
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.10 E-value=0.00013 Score=73.78 Aligned_cols=139 Identities=10% Similarity=0.153 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhcC
Q 004339 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASG 379 (760)
Q Consensus 301 ~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~ 379 (760)
.+|+.+.++ ..+. +..+.|..+|.+++...+....+|...|.+... .++...|..+|+.+++..|
T Consensus 2 ~v~i~~m~~-~~r~------------~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~- 67 (280)
T PF05843_consen 2 LVWIQYMRF-MRRT------------EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP- 67 (280)
T ss_dssp HHHHHHHHH-HHHH------------HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHH-HHHh------------CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-
Confidence 456666666 5555 779999999999997666678899999999666 5666669999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 380 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 380 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
.++.+|......+...|+.+.|..+|++++...+... ...+|......-...|+.+....+..++.+..|.+..
T Consensus 68 ----~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 68 ----SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp ----T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred ----CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 8899999999999999999999999999999753333 3568888888888999999999999999999998544
No 224
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.014 Score=65.43 Aligned_cols=313 Identities=12% Similarity=0.102 Sum_probs=198.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHh
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTG 98 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~ 98 (760)
+|.+.+..+-|++|..+|.+. .-+..+...| .-..++.+.|.++.+++ +.+..|..+|.+.. .+...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~VL---ie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQVL---IENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHHHH---HHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 567778888888888888764 2233333322 23446777787777665 46788888888877 45888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHH
Q 004339 99 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 178 (760)
Q Consensus 99 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (760)
+|+..|-++-. +..|.....+..+.|+|++-+.++.-+.+.... ....+.++... ....
T Consensus 1122 dAieSyikadD----------ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-----~~id~eLi~Ay------Akt~ 1180 (1666)
T KOG0985|consen 1122 DAIESYIKADD----------PSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-----PYIDSELIFAY------AKTN 1180 (1666)
T ss_pred HHHHHHHhcCC----------cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-----ccchHHHHHHH------HHhc
Confidence 89888876522 567778888888889999988888777653210 01111110000 0000
Q ss_pred hhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 179 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258 (760)
Q Consensus 179 ~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 258 (760)
....+..+. ..|+. .-.-..|.-++..|.|+.|.-+|.. +..|..|+..+..+|.|..|....+++
T Consensus 1181 rl~elE~fi----~gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA- 1246 (1666)
T KOG0985|consen 1181 RLTELEEFI----AGPNV-ANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA- 1246 (1666)
T ss_pred hHHHHHHHh----cCCCc-hhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc-
Confidence 000111100 23333 3345677777888888888777753 445778888888999999888887766
Q ss_pred HHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHH
Q 004339 259 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 338 (760)
Q Consensus 259 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 338 (760)
++...|-..+..+...+.+.-|.-+=-.++- ...-+-.+... |... |.|++-+.+++.
T Consensus 1247 ----ns~ktWK~VcfaCvd~~EFrlAQiCGL~iiv-----hadeLeeli~~-Yq~r------------GyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1247 ----NSTKTWKEVCFACVDKEEFRLAQICGLNIIV-----HADELEELIEY-YQDR------------GYFEELISLLEA 1304 (1666)
T ss_pred ----cchhHHHHHHHHHhchhhhhHHHhcCceEEE-----ehHhHHHHHHH-HHhc------------CcHHHHHHHHHh
Confidence 4566788888777777777766554332222 22233344454 5555 999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH---------HHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 339 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ---------VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 339 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---------al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
++.+...+...+..||.+|.+-. +++-.+.++- ++... +....|..+..+|.+-..|+.|.-.
T Consensus 1305 ~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~------eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1305 GLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAA------EQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred hhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHH------HHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 98887777777888888887543 3333333322 22222 3466788888888888888777543
No 225
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.014 Score=65.32 Aligned_cols=223 Identities=17% Similarity=0.113 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
.+.+|..+|.+..+.|...+|+..|-++ +++..|.....+..+.|.|++-+.++.-+-+... .+.+-..|..+|
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAY 1176 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHH
Confidence 3455666666666666666666655443 3445555555556666666666655554443221 122222333334
Q ss_pred hhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004339 276 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 355 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 355 (760)
.+.++..+-..++ ..| +..-.-..|.- ++.. +.|+.|.-+|.. ..-|..|+.
T Consensus 1177 Akt~rl~elE~fi-----~gp--N~A~i~~vGdr-cf~~------------~~y~aAkl~y~~--------vSN~a~La~ 1228 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-----AGP--NVANIQQVGDR-CFEE------------KMYEAAKLLYSN--------VSNFAKLAS 1228 (1666)
T ss_pred HHhchHHHHHHHh-----cCC--CchhHHHHhHH-Hhhh------------hhhHHHHHHHHH--------hhhHHHHHH
Confidence 4444433322222 111 22222334444 4444 666666666643 334556677
Q ss_pred HHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHh
Q 004339 356 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 435 (760)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 435 (760)
.+..+|.|..|.+..+++ ++..+|-..+.++...+.|.-|.-+= +.. --+++-+-.|...|...
T Consensus 1229 TLV~LgeyQ~AVD~aRKA----------ns~ktWK~VcfaCvd~~EFrlAQiCG---L~i---ivhadeLeeli~~Yq~r 1292 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARKA----------NSTKTWKEVCFACVDKEEFRLAQICG---LNI---IVHADELEELIEYYQDR 1292 (1666)
T ss_pred HHHHHHHHHHHHHHhhhc----------cchhHHHHHHHHHhchhhhhHHHhcC---ceE---EEehHhHHHHHHHHHhc
Confidence 777777777777666655 23344444444444444443332110 000 01133344455555555
Q ss_pred ccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 436 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 436 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
|-+++-+..++.++-+...+...+..||.+|.+
T Consensus 1293 GyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 555555555555555555555555555555543
No 226
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00044 Score=64.25 Aligned_cols=189 Identities=14% Similarity=0.148 Sum_probs=117.9
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHccCCHhHH
Q 004339 27 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELLISSDTGAA 100 (760)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~A 100 (760)
.+.|++|..+|.++-. +|...+++..|-..|.++-... .+....|...+.||...++.+|
T Consensus 27 ~~k~eeAadl~~~Aan--------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eA 92 (288)
T KOG1586|consen 27 SNKYEEAAELYERAAN--------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEA 92 (288)
T ss_pred CcchHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHH
Confidence 3478888888877643 2222233333333343333221 2235567777888888899999
Q ss_pred HHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHH
Q 004339 101 LDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEK-GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 178 (760)
Q Consensus 101 ~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (760)
+.++.+++.+....+.-. .+..+..+|.+|..- .++++|+.+|+++-....
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk--------------------------- 145 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK--------------------------- 145 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc---------------------------
Confidence 999999999987754211 234456778887665 889999999998865210
Q ss_pred hhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH-------HHHHHHHHHHHcCCHHHHH
Q 004339 179 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD-------AYLRLAAIAKARNNLQLSI 251 (760)
Q Consensus 179 ~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g~~~~A~ 251 (760)
.-+........+...+..-..+++|.+|+.+|+++....-++.. .++.-|.|++-..+.-.+.
T Consensus 146 ----------~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~ 215 (288)
T KOG1586|consen 146 ----------GEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ 215 (288)
T ss_pred ----------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHH
Confidence 00011122345666777777888899999998888765544432 2344455556556666666
Q ss_pred HHHHHHHHHcCCChH
Q 004339 252 ELVNEALKVNGKYPN 266 (760)
Q Consensus 252 ~~~~~al~~~p~~~~ 266 (760)
..+++...++|....
T Consensus 216 ~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 216 RALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHhcCCcccc
Confidence 666666777775443
No 227
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.94 E-value=0.00014 Score=65.25 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 407 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 407 (760)
-|+.|.+.++.....+|.++.++++-|.++..+.++... ++. ..-+.+|+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g-------------------~es----------~~miedAis 56 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQG-------------------PES----------KKMIEDAIS 56 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-H-------------------HHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCc-------------------chH----------HHHHHHHHH
Confidence 355555666665666666666666555555544332110 000 012566777
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 408 MYQNCLRKFYYNTDAQILLYLARTHYEAEQ-----------WQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 408 ~~~~al~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
-|+.|+.+ +|+...+++++|.+|...+. |++|..+|++|+..+|++...+..|.++
T Consensus 57 K~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 57 KFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 77777776 77778899999999887654 7789999999999999997666555544
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0014 Score=61.56 Aligned_cols=202 Identities=14% Similarity=0.137 Sum_probs=132.6
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCc-H
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKID-----PRD-A 82 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~-~ 82 (760)
..|..-+.+|....+|++|..++.++++-..+| +.++-..|.+...+..+.++..+|+++..+. |+. .
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 345666777778889999999999998655443 3345556666677788899999999988763 332 2
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 83 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 83 ~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
.++-.-|.++..-+++.|+.+|++++.+....... .....+...+.++.+...|.+|-..|.+-..+..
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~---------- 181 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD---------- 181 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH----------
Confidence 33444555666778999999999999887664321 1345667778888888889888888776543210
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----CCcHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY----QDYVDAYLRL 237 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~l 237 (760)
. ....+.....+.....+|....+|..|..+|+...++. |....+.-+|
T Consensus 182 --------------------~-------~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 182 --------------------K-------CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred --------------------H-------HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 0 01223334456666667777778888888888866543 3344444444
Q ss_pred HHHHHHcCCHHHHHHHH
Q 004339 238 AAIAKARNNLQLSIELV 254 (760)
Q Consensus 238 a~~~~~~g~~~~A~~~~ 254 (760)
-.. +..|+.++...++
T Consensus 235 L~a-yd~gD~E~~~kvl 250 (308)
T KOG1585|consen 235 LTA-YDEGDIEEIKKVL 250 (308)
T ss_pred HHH-hccCCHHHHHHHH
Confidence 433 3566666655544
No 229
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=8.6e-05 Score=69.11 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=78.4
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
..|..|+.+|.++|.++|..+..|.+.+.|+++..+++.+.....+++++.| +.+..++.+|.++.....|+.||
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~-----N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP-----NLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh-----HHHHHHHHHHHHHHhhccccHHH
Confidence 8899999999999999999999999999999999999999999999999998 77899999999999999999999
Q ss_pred HHHHHHHhhh
Q 004339 407 KMYQNCLRKF 416 (760)
Q Consensus 407 ~~~~~al~~~ 416 (760)
..+.++..+.
T Consensus 99 ~~Lqra~sl~ 108 (284)
T KOG4642|consen 99 KVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHH
Confidence 9999997664
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.91 E-value=0.00091 Score=69.54 Aligned_cols=193 Identities=18% Similarity=0.200 Sum_probs=131.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHH
Q 004339 236 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 315 (760)
Q Consensus 236 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~ 315 (760)
.+..-..+..++..-++...+|++++|+.+.+|..|+.-. .....+|..+|+++++..... ++.. ....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~-------lg~s-~~~~- 241 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEAS-------LGKS-QFLQ- 241 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHh-------hchh-hhhh-
Confidence 4445556778888889999999999999999999888532 234788888998888754321 1111 0000
Q ss_pred hhhhcCchHHhhcHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 004339 316 RNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 393 (760)
Q Consensus 316 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la 393 (760)
..|.. +. .+...+. .+.+...+|.|..+.|+.++|++.|..+++..|.. ++..++.+|.
T Consensus 242 ---------~~g~~------~e-~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLi 302 (539)
T PF04184_consen 242 ---------HHGHF------WE-AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLI 302 (539)
T ss_pred ---------cccch------hh-hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHH
Confidence 00110 01 1111111 34566789999999999999999999999988843 4677999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH-hcc---------------HHHHHHHHHHHHHhCCCChh
Q 004339 394 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQ---------------WQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~ 457 (760)
.+++.++.|.++...+.+.-+. .-|..+.+.+.-+.+-.+ .|+ -..|.+.+.+|++.+|.-+.
T Consensus 303 e~LLelq~Yad~q~lL~kYdDi-~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 303 EALLELQAYADVQALLAKYDDI-SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHhcCCHHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 9999999999999988875332 235556666655544333 121 13478899999999998765
Q ss_pred HH
Q 004339 458 LR 459 (760)
Q Consensus 458 ~~ 459 (760)
..
T Consensus 382 YL 383 (539)
T PF04184_consen 382 YL 383 (539)
T ss_pred hh
Confidence 43
No 231
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.91 E-value=0.017 Score=62.37 Aligned_cols=115 Identities=24% Similarity=0.322 Sum_probs=60.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHH------HHH----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKV------LEI----YPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
-..|.++-+..++++|+.+|.+. +++ .|... ..--..|.-+...|+++.|+..|-.+--+ .
T Consensus 665 dkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~--------~ 736 (1636)
T KOG3616|consen 665 DKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL--------I 736 (1636)
T ss_pred HhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------H
Confidence 34455555666677777776542 222 12211 12223455556667777777776554211 0
Q ss_pred HHHHH-HccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 87 DLGEL-LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 146 (760)
Q Consensus 87 ~la~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 146 (760)
..... .....+.+|+..+......... ...|-.++..|...|+|+-|..+|.++
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~------s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTA------SGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccc------cccchHHHHHhccchhHHHHHHHHHhc
Confidence 11111 1123555555555443322211 344566777888888888888888665
No 232
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.90 E-value=2.6e-05 Score=53.74 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 56 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 56 (760)
+++.+|..|...|++++|+.+|+++++.+|+++.+|..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45556666666666666666666666666666666665553
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0021 Score=63.03 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=133.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhc-CCCCChHHHH--HHHHHHH
Q 004339 235 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATL--SLGNWNY 311 (760)
Q Consensus 235 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~--~lg~~~y 311 (760)
..-+.+....|++.+|.....+++.-+|.+..++..--.+++.+|+...-...+.+++.. ++....++|. .++.. +
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg-L 185 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG-L 185 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh-H
Confidence 334556678899999999999999999999999999999999999999999999999887 4443333332 22222 4
Q ss_pred HHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHH
Q 004339 312 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 391 (760)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 391 (760)
... |-+++|.+.-.++++++|.+.++...++.++...|++.++.+...+.-..-..+. .-...-|..
T Consensus 186 ~E~------------g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~-mlasHNyWH 252 (491)
T KOG2610|consen 186 EEC------------GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW-MLASHNYWH 252 (491)
T ss_pred HHh------------ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh-HHHhhhhHH
Confidence 444 9999999999999999999999999999999999999999998776543221000 011334667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcCCCc
Q 004339 392 LAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 421 (760)
.|.+++..+.|+.|+.+|..-+-......+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHhhccc
Confidence 788999999999999999886654333444
No 234
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.88 E-value=2.3e-05 Score=54.08 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 464 (760)
.+++.+|.+|..+|++++|+.+|+++++.+|+++.+|+.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567888888888888888888888888888888888888765
No 235
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.88 E-value=0.00026 Score=63.64 Aligned_cols=106 Identities=17% Similarity=0.066 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHH
Q 004339 213 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL----------QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 282 (760)
Q Consensus 213 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 282 (760)
|+.|.+.++.....+|.+++.+++-|.++..+.++ ++|+.-|+.++.++|+...+++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~-- 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF-- 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--
Confidence 56677777777777777777777777766554332 334444444455555555555555554443321
Q ss_pred HHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004339 283 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 355 (760)
Q Consensus 283 ~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 355 (760)
...+.......|++|..+|+++...+|++......|..
T Consensus 85 -----------------------------------l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 85 -----------------------------------LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp -----------------------------------H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred -----------------------------------hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 11111222367899999999999999998775554443
No 236
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.87 E-value=0.023 Score=60.12 Aligned_cols=127 Identities=20% Similarity=0.198 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hhcCC--
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-KFYYN-- 419 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~-- 419 (760)
.......|..++.+....|.+..|...+.++....+.... ..+.+.+..+.++...|+..+|+..++..+. .+...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 3345678999999999999999999999999887642211 2578889999999999999999999998888 22111
Q ss_pred ---------------------C-c-------HHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCChhHHhhHHH
Q 004339 420 ---------------------T-D-------AQILLYLARTHYEA------EQWQDCKKSLLRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 420 ---------------------~-~-------~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~ 464 (760)
. . ..+++.+|...... +..+.++..|..++.+.|+....|+.+|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0 1 55666777777777 88888999999999999999999999999
Q ss_pred HHHHHH
Q 004339 465 AMQKFS 470 (760)
Q Consensus 465 ~~~~~~ 470 (760)
.+...-
T Consensus 301 ~~~~~~ 306 (352)
T PF02259_consen 301 FNDKLL 306 (352)
T ss_pred HHHHHH
Confidence 876654
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.00072 Score=66.15 Aligned_cols=167 Identities=13% Similarity=0.030 Sum_probs=133.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh-CCCC--
Q 004339 270 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-HTSN-- 346 (760)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~-- 346 (760)
.-+.++...|++.+|...+.+++...|. +..++...-.+ ++.. |+...-...+++++.. +|+-
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a-~fy~------------G~~~~~k~ai~kIip~wn~dlp~ 173 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDA-HFYN------------GNQIGKKNAIEKIIPKWNADLPC 173 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCch-hhhhhhhhhhH-HHhc------------cchhhhhhHHHHhccccCCCCcH
Confidence 3445567789999999999999999998 66666655566 6767 8888889999999887 6554
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc---H
Q 004339 347 -LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---A 422 (760)
Q Consensus 347 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~ 422 (760)
.++...++..+...|-|++|.+...++++++| .+..+...+++++...|++.++.++..+.-.... ... .
T Consensus 174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~-----~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlas 247 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYDDAEKQADRALQINR-----FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLAS 247 (491)
T ss_pred HHHHHHHHHhhHHHhccchhHHHHHHhhccCCC-----cchHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHh
Confidence 66777788899999999999999999999998 8889999999999999999999999887655432 111 3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH--HhCCCCh
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAI--HLAPSNY 456 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~ 456 (760)
.-|...+.++...+.|+.|+.+|..-+ .+..++.
T Consensus 248 HNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 248 HNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 345678888999999999999997644 3344444
No 238
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.86 E-value=0.046 Score=56.13 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=127.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHH
Q 004339 252 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 331 (760)
Q Consensus 252 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 331 (760)
-.+++++...|-.+.+|+.....+...++-+.|+....+++...|+ ..+.++.+ |-... +.....|-|+.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps----L~~~lse~-yel~n-----d~e~v~~~fdk 358 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS----LTMFLSEY-YELVN-----DEEAVYGCFDK 358 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc----hheeHHHH-Hhhcc-----cHHHHhhhHHH
Confidence 3567777778888899999999999999999999999999988775 22223322 22220 00000122222
Q ss_pred HHHHHHHHHhh-----------CC------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHH
Q 004339 332 AKELYTRVIVQ-----------HT------------SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 388 (760)
Q Consensus 332 A~~~~~~al~~-----------~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 388 (760)
..+.+.+-... +| ....+|..+.....+..-...|..+|.++....- ..+.+
T Consensus 359 ~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-----~~h~v 433 (660)
T COG5107 359 CTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-----VGHHV 433 (660)
T ss_pred HHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-----CCcce
Confidence 22222211111 01 1112222233333344456777778877766431 22333
Q ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHH
Q 004339 389 WINLAH-VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 467 (760)
Q Consensus 389 ~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 467 (760)
+..-|. -|...|++.-|..+|+-.+..|+ +++..-...-..+...|+-..|...|++++..-.. ..+-.+|+
T Consensus 434 yi~~A~~E~~~~~d~~ta~~ifelGl~~f~--d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~-----~q~k~iy~ 506 (660)
T COG5107 434 YIYCAFIEYYATGDRATAYNIFELGLLKFP--DSTLYKEKYLLFLIRINDEENARALFETSVERLEK-----TQLKRIYD 506 (660)
T ss_pred eeeHHHHHHHhcCCcchHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH-----hhhhHHHH
Confidence 333332 35567888888888888888653 33333334444556788888888888887754321 13445566
Q ss_pred HHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 004339 468 KFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASN 506 (760)
Q Consensus 468 ~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~ 506 (760)
++. +++.-.+.+..+..+-++....-|
T Consensus 507 kmi------------~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 507 KMI------------EYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHH------------HHHHhhcchHHHHhHHHHHHHHcC
Confidence 555 667777777777777666665543
No 239
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00047 Score=69.84 Aligned_cols=138 Identities=13% Similarity=0.082 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-RNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 276 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 276 (760)
.+|..+.+...+.+..+.|..+|.++++..+....+|...|.+.+. .++...|..+|+.+++.+|.+..+|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3677788888888889999999999997666778899999999777 566666999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCC--hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 277 KNDDWVKAKETFRAASDATDGKD--SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~--~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
..|+...|..+|++++...+... ...|.....+ -... |+++....++.++....|....
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f-E~~~------------Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEF-ESKY------------GDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH-HHHH------------S-HHHHHHHHHHHHHHTTTS-H
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999998765422 2344444444 3344 9999999999999999887444
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0028 Score=59.55 Aligned_cols=204 Identities=14% Similarity=0.108 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ------AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPI 120 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~ 120 (760)
...|..-+.+|...++|++|..++.++++-..++.. ++-..+.+.. ...+.++..+|+++..+.-.++.+.++
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 455666778888899999999999999965544322 2333444444 458999999999999999988877776
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
..-...+--....-+++.|+++|++++.+-.. . .....-...+
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~----------------------------------~---dr~~ma~el~ 153 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEE----------------------------------D---DRDQMAFELY 153 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc----------------------------------c---chHHHHHHHH
Confidence 66666666677788999999999999863100 0 0111234566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----CCChHHHHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----GKYPNALSM 270 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 270 (760)
-..++++.+...+.+|-..+.+-... .|.....++....+|+...+|..|..+++...++. |.+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 77889999999999988877765422 24444556666777778889999999998876653 333445555
Q ss_pred HHHHHhhcCCHHHHHHHHH
Q 004339 271 LGDLELKNDDWVKAKETFR 289 (760)
Q Consensus 271 la~~~~~~g~~~~A~~~~~ 289 (760)
|-.. +..|+.++....+.
T Consensus 234 LL~a-yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 234 LLTA-YDEGDIEEIKKVLS 251 (308)
T ss_pred HHHH-hccCCHHHHHHHHc
Confidence 5444 45667766665553
No 241
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.74 E-value=0.034 Score=58.85 Aligned_cols=151 Identities=16% Similarity=0.102 Sum_probs=108.3
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cCC----
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ----DYVDAYLRLAAIAKARNNLQLSIELVNEALKV-NGK---- 263 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~---- 263 (760)
.......+..++.+....|.+..|...+.++....+ ..+.+.+..+.++...|+..+|+..+...+.. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 445667888899999999999999999988887542 24667778888899999999999888887771 110
Q ss_pred -----------------------------ChHHHHHHHHHHhhc------CCHHHHHHHHHHhhhcCCCCChHHHHHHHH
Q 004339 264 -----------------------------YPNALSMLGDLELKN------DDWVKAKETFRAASDATDGKDSYATLSLGN 308 (760)
Q Consensus 264 -----------------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~lg~ 308 (760)
...++..+|...... +....++..|..++...|. ...+|+.+|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~ 300 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWAL 300 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHH
Confidence 012566667766666 7889999999999999887 6668888888
Q ss_pred HHHHHHHhhhhcCch-----HHhhcHHHHHHHHHHHHhhCCC
Q 004339 309 WNYFAALRNEKRAPK-----LEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 309 ~~y~~~~~~~~~~~~-----~~~~~~~~A~~~~~~al~~~p~ 345 (760)
. +...+......+. ........|+..|-+++...+.
T Consensus 301 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 301 F-NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred H-HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8 6666544432221 2224445577777777776665
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.73 E-value=0.017 Score=63.09 Aligned_cols=139 Identities=11% Similarity=0.075 Sum_probs=102.0
Q ss_pred hcHHHHHHHHHHHHhhCC-CCHHH------HHHHHHHHH----HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHT-SNLYA------ANGAGVVLA----EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p-~~~~~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~ 395 (760)
|+-+.++.++..+.+... ..+.+ |+.....+. .......|..++.......| +.+..++..|.+
T Consensus 202 gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP-----~s~lfl~~~gR~ 276 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP-----NSALFLFFEGRL 276 (468)
T ss_pred CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHH
Confidence 889999999999877321 11221 111111111 23467889999999999998 778889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhh-HHHHHHHHH
Q 004339 396 YFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD-AGVAMQKFS 470 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~ 470 (760)
+...|+.+.|+..|+.++..-..- -..-+++.+|+++.-+++|++|..+|...++.+.....++.. .|.|+...+
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLG 354 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Confidence 999999999999999988531111 125667899999999999999999999999988776555444 455555555
No 243
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.72 E-value=0.0083 Score=61.84 Aligned_cols=191 Identities=16% Similarity=0.143 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCChHHHHHHHHHHhh---cCCHHHHHHHHHHhhhcCCCCChHHH
Q 004339 231 VDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYAT 303 (760)
Q Consensus 231 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (760)
+++...+-..|....+|+.-+.+++.+-.+ -++.+.+...+|.++.+ .|+.++|+..+..++......++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344555555666667776666666655544 34455666677777776 77777777777776655555577777
Q ss_pred HHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC
Q 004339 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 383 (760)
Q Consensus 304 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 383 (760)
..+|.+ |-......... ....+++|+..|.++...+| +.+.-.+++.++...|.-.....-+.++.
T Consensus 221 gL~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~--------- 286 (374)
T PF13281_consen 221 GLLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIG--------- 286 (374)
T ss_pred HHHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHH---------
Confidence 777777 65553221110 11458999999999999995 55666677777777775333322222211
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
..+...+...|. + ....+-..+..++.+..-.|++++|+.++++++.+.|..
T Consensus 287 ------~~l~~llg~kg~-----------~---~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 287 ------VKLSSLLGRKGS-----------L---EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ------HHHHHHHHhhcc-----------c---cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 111111222221 1 122334444455566666677777777777777665543
No 244
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.16 Score=63.01 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-cC-----
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-YY----- 418 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~----- 418 (760)
.-...|...|.+....|.++.|..++-.|.+..+ +.++...|..++..|+-..|+..++..+.++ ++
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~-------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~ 1740 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRL-------PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPY 1740 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc-------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCc
Confidence 3567899999999999999999999999988765 8899999999999999999999999999764 22
Q ss_pred ---CCc------HHHHHHHHHHHHHhccHH--HHHHHHHHHHHhCCCChhHHhhHHHHHHHHHH
Q 004339 419 ---NTD------AQILLYLARTHYEAEQWQ--DCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 471 (760)
Q Consensus 419 ---~~~------~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 471 (760)
|.. ..+.+.++......|++. .-+.+|..+..+.|....-+|.+|.-|.++-.
T Consensus 1741 ~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~ 1804 (2382)
T KOG0890|consen 1741 TDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLE 1804 (2382)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhh
Confidence 111 223444445555556543 35688999999999988899999976655543
No 245
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.68 E-value=0.15 Score=56.64 Aligned_cols=425 Identities=12% Similarity=-0.024 Sum_probs=224.9
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCcHH
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ---LGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
+..++.....+..|..++...|++++-...-..+..+.|.++..|.....-... .+....+...|++++.- -+++.
T Consensus 106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y~~v~ 184 (881)
T KOG0128|consen 106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-YNSVP 184 (881)
T ss_pred hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-cccch
Confidence 345666667778888888999998888887778888888888887776554433 36777888888888853 33555
Q ss_pred HHHHHHHHHc--------cCCHhHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchh
Q 004339 84 AFIDLGELLI--------SSDTGAALDAFKTARTLLKKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 153 (760)
Q Consensus 84 ~~~~la~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 153 (760)
.|...+..+. .+++..-...|.+++.......... ...++..+-..|...-..++-+.+|...+..+...
T Consensus 185 iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~ 264 (881)
T KOG0128|consen 185 IWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDE 264 (881)
T ss_pred HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchh
Confidence 5555444332 2467777778888776543321111 13344444555555555567777777776643111
Q ss_pred hhhcccchhhhhh--hhhHHHHH----HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 154 TLLDSKTKTYVID--ASASMLQF----KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 227 (760)
Q Consensus 154 ~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 227 (760)
....... +... ........ ....+...+..+...+...|.....|..+.......|.+..-...+++++...
T Consensus 265 ~~~~~~~--~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~ 342 (881)
T KOG0128|consen 265 DTRGWDL--SEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM 342 (881)
T ss_pred hhhHHHH--HHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc
Confidence 1000000 0000 00000000 00000011111112222334444455555666666677766667777777666
Q ss_pred CCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCC-HHHHHHHHHHhhhcCCCCChHHHHH
Q 004339 228 QDYVDAYLRLAAIA-KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD-WVKAKETFRAASDATDGKDSYATLS 305 (760)
Q Consensus 228 p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~ 305 (760)
+.....|+..+... ..++-...+...+.+++...|-...+|...-..+.+.+. ...-...+.+.+... ..+..
T Consensus 343 ~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~-----~~l~~ 417 (881)
T KOG0128|consen 343 VLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT-----VELHN 417 (881)
T ss_pred cccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH-----HHHHH
Confidence 66666676666544 223333444455555555555544444332222222222 112222222222210 00111
Q ss_pred HHHHHHHHHHhhhhcC----chHHhhcHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhcC
Q 004339 306 LGNWNYFAALRNEKRA----PKLEATHLEKAKELYTRVIVQ-HTSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASG 379 (760)
Q Consensus 306 lg~~~y~~~~~~~~~~----~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~ 379 (760)
...+ |+.. ..+.. .......|..|...|...... --.....+...|.++. .+++.+.|+.+....+....+
T Consensus 418 ~~~~-~rr~--~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~ 494 (881)
T KOG0128|consen 418 DYLA-YRRR--CTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG 494 (881)
T ss_pred HHHH-HHHh--hcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc
Confidence 1111 1111 11000 111235666777776665554 1223345556666665 567888898888877765431
Q ss_pred CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHhccHHHHHHHHH
Q 004339 380 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLL 446 (760)
Q Consensus 380 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~ 446 (760)
.....|+....+-...|+...|..++++|+.....+.+ -.++..+-+.-...|.++.......
T Consensus 495 ----~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 495 ----SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred ----hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHH
Confidence 33447888888888889999999999999886444443 4445455555555666665554443
No 246
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0042 Score=61.13 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhH
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 462 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 462 (760)
.+..+-.-|.-|++.++|..|+..|.+.|..-...++ +.+|.+.|-|.+..|+|..|+.-..+|+.++|.+..+++.=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 3455666788899999999999999999986323333 67788999999999999999999999999999999998888
Q ss_pred HHHHHHHH
Q 004339 463 GVAMQKFS 470 (760)
Q Consensus 463 a~~~~~~~ 470 (760)
|.|+..+.
T Consensus 160 Akc~~eLe 167 (390)
T KOG0551|consen 160 AKCLLELE 167 (390)
T ss_pred hHHHHHHH
Confidence 88865543
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.62 E-value=0.0024 Score=66.46 Aligned_cols=137 Identities=16% Similarity=0.129 Sum_probs=107.4
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC----------------CC----Cch
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV----------------FV----QMP 386 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~----~~~ 386 (760)
.+...-++.-.+|++++|+++.+|..||.- ......+|..+|+++++...... +. ..+
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~ 259 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLV 259 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhh
Confidence 677888888999999999999999887752 23446778888888776542100 00 014
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCChhHHhhHHHH
Q 004339 387 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL-APSNYTLRFDAGVA 465 (760)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~ 465 (760)
.+...+|.|..++|+..+|++.|+..++.++..++..++.+|..+++.++.|.++...+.+.=.+ -|....+.|.-|++
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 45678999999999999999999999998665556889999999999999999999999997544 46777777877776
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.60 E-value=0.1 Score=52.87 Aligned_cols=145 Identities=17% Similarity=0.032 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 120 IEVLNNIGVIHFEKG-EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 120 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
...+++.|......+ +++.|..++++++.+..... ...........-...
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~-----------------------------~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG-----------------------------KMDKLSPDGSELRLS 85 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh-----------------------------hccccCCcHHHHHHH
Confidence 567888999999999 99999999999987421000 000000001112346
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CChHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTV---AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG-KYPNALSMLGDL 274 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 274 (760)
++..++.+|...+.++ +|..++..+-...|+.+..+...-.++...++.+.+...+.+++...+ .....-..+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 7888999999888765 455666666677788888876666666668999999999999987654 222222222222
Q ss_pred -HhhcCCHHHHHHHHHHhhh
Q 004339 275 -ELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 275 -~~~~g~~~~A~~~~~~al~ 293 (760)
.+.......|...+..++.
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHH
Confidence 1122334566666665554
No 249
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.58 E-value=7.9e-05 Score=47.76 Aligned_cols=33 Identities=30% Similarity=0.644 Sum_probs=26.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004339 36 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 68 (760)
Q Consensus 36 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 68 (760)
+|+++|+++|+++.+|+.+|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367788888888888888888888888888775
No 250
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.58 E-value=7.1e-05 Score=47.96 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=19.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004339 336 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 367 (760)
Q Consensus 336 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 367 (760)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666554
No 251
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.57 E-value=0.0022 Score=58.44 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=87.2
Q ss_pred HHHHHHhhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 335 LYTRVIVQHTSNLY---AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 411 (760)
Q Consensus 335 ~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 411 (760)
...+....+|.+.+ +...+|..+...|++++|...++.++....... -.+.+-..||.+.+.+|.++.|+..+..
T Consensus 74 ~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~--lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 74 AAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDEN--LKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHH--HHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 33444445555555 345678888999999999999999886543111 1255678899999999999999999886
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 412 CLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 412 al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
.... .-.+.+....|.++...|+..+|+..|.+++...++.
T Consensus 152 ~~~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 152 IKEE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cccc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 6541 1225567789999999999999999999999997554
No 252
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.56 E-value=0.2 Score=56.35 Aligned_cols=240 Identities=15% Similarity=0.094 Sum_probs=152.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh-
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP- 265 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 265 (760)
.+......+.......++.+|..++.++...-|. ........|.+....|+++.|..+.+.++..-|.+.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4456666777888889999999888887755432 123344567778899999999999999998877653
Q ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHH-----HHHHHHHHHHHHhhhhcCchHHhhcH--HHHHH
Q 004339 266 ----NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT-----LSLGNWNYFAALRNEKRAPKLEATHL--EKAKE 334 (760)
Q Consensus 266 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~lg~~~y~~~~~~~~~~~~~~~~~~--~~A~~ 334 (760)
.++..+|.+..-.|++.+|..+...+.+.....+.+.+ +..+.+ +... |.. .....
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~ 560 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEK 560 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHH
Confidence 37778899999999999999999888876433233222 222223 3333 522 22222
Q ss_pred HHH----HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CCCc-hHHHHHHHHHHHHcCCHHHHHHH
Q 004339 335 LYT----RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQM-PDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 335 ~~~----~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~-~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
.|. .-+...|.........+.++...-+++.+..-....+....... .+.. .-+++.|+.+++..|+++.|...
T Consensus 561 ~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 561 AFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 222 22334455555544445444433336666666655555432110 1111 22335899999999999999999
Q ss_pred HHHHHhhhcCCC-c----HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 409 YQNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 409 ~~~al~~~~~~~-~----~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
+..+......+. . ..++......+...|+...|...+.+.
T Consensus 641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 999888764442 1 222222333445579999988888773
No 253
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.55 E-value=0.00019 Score=46.18 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
+.+++.+|.+|+.+|++++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578888888888888888888888888888875
No 254
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.55 E-value=0.00016 Score=46.56 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
+.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888864
No 255
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.16 Score=53.19 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=73.5
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCcHHH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ-IEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 84 (760)
++...+.++..|+.......+.+.+.+--.+|.+++..+|++++.|..-|...+.-+. ++.|..+|.++++.+|+++..
T Consensus 97 at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 97 ATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 4456677888888888888888889999999999999999999999999998887765 999999999999999999988
Q ss_pred HHHHHH
Q 004339 85 FIDLGE 90 (760)
Q Consensus 85 ~~~la~ 90 (760)
|...-.
T Consensus 177 w~eyfr 182 (568)
T KOG2396|consen 177 WKEYFR 182 (568)
T ss_pred HHHHHH
Confidence 765433
No 256
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.53 E-value=0.24 Score=55.09 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=87.4
Q ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH--Hc--cCCHhHHH
Q 004339 26 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL--LI--SSDTGAAL 101 (760)
Q Consensus 26 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~--~~~~~~A~ 101 (760)
..+.-+.=+..++.-+.+++.+...+..|..++...|++.+-...-..+..+.|..+..|.....- ++ .+....+.
T Consensus 91 ~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 91 NEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 344455566777777788888899999999999999999998888888888999999998887653 33 24778888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHhc
Q 004339 102 DAFKTARTLLKKAGEEVPIEVLNNIGVIH-------FEKGEFESAHQSFKDALG 148 (760)
Q Consensus 102 ~~~~~al~~~~~~~~~~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~ 148 (760)
..|++++.-... +.+|...+... ...+.++....+|.+++.
T Consensus 171 ~~~ekal~dy~~------v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 171 ELFEKALGDYNS------VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccc------chHHHHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 889988864332 34454444443 445678888888988886
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.52 E-value=0.1 Score=52.85 Aligned_cols=101 Identities=14% Similarity=0.067 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHc----C------C----cHHHHHHHHHHHHHcCCHH---HHHHHHHHH
Q 004339 196 KVTVLFNLARLLEQIH-DTVAASVLYRLILFKY----Q------D----YVDAYLRLAAIAKARNNLQ---LSIELVNEA 257 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~----p------~----~~~~~~~la~~~~~~g~~~---~A~~~~~~a 257 (760)
-...+|+.|......+ +++.|..++++++..- + + ...++..++.+|...+.++ +|..+++.+
T Consensus 34 La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l 113 (278)
T PF08631_consen 34 LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3468899999999999 9999999999998762 1 1 1345677888888877654 456666666
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q 004339 258 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 296 (760)
Q Consensus 258 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (760)
....|+.+.++...-.++...++.+.+...+.+++...+
T Consensus 114 ~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 114 ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 677898888887777777778899999999999988654
No 258
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.035 Score=53.00 Aligned_cols=201 Identities=12% Similarity=0.026 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH-H
Q 004339 62 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE-S 138 (760)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~ 138 (760)
..-..|+.+...++.++|.+..+|...-.++. .+ +..+-+.++..++.-+|++ ..+|...-.+....|++. .
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN-----YQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN-----YQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-----hhHHHHHHHHHHHhcCcccc
Confidence 34566777777888888988888888777776 44 7888888888888888887 788888888888888777 6
Q ss_pred HHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 004339 139 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 218 (760)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 218 (760)
-+.+...++. .+..+..+|...--+....+.++.-+.
T Consensus 132 ELef~~~~l~-------------------------------------------~DaKNYHaWshRqW~~r~F~~~~~EL~ 168 (318)
T KOG0530|consen 132 ELEFTKLMLD-------------------------------------------DDAKNYHAWSHRQWVLRFFKDYEDELA 168 (318)
T ss_pred hHHHHHHHHh-------------------------------------------ccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 6777777765 445566777777777778888999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh-cC--CHHHHHHHHH
Q 004339 219 LYRLILFKYQDYVDAYLRLAAIAKA-RN-----NLQLSIELVNEALKVNGKYPNALSMLGDLELK-ND--DWVKAKETFR 289 (760)
Q Consensus 219 ~~~~~l~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~ 289 (760)
+...++..+-.+-.+|...-.+... .| ..+.-+.+....+.+.|++..+|..|..++.. .| .+.....+..
T Consensus 169 y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~ 248 (318)
T KOG0530|consen 169 YADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVE 248 (318)
T ss_pred HHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHH
Confidence 9999988776666666543322211 22 23344667788888899999999988888775 44 2444445555
Q ss_pred HhhhcCCCCChHHHHHHHHHHH
Q 004339 290 AASDATDGKDSYATLSLGNWNY 311 (760)
Q Consensus 290 ~al~~~~~~~~~~~~~lg~~~y 311 (760)
..+...+...++.+-.+..+ |
T Consensus 249 ~l~~~~~~~sP~lla~l~d~-~ 269 (318)
T KOG0530|consen 249 NLYLQLPKRSPFLLAFLLDL-Y 269 (318)
T ss_pred HHhhccCCCChhHHHHHHHH-H
Confidence 44433344466766666666 5
No 259
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0035 Score=58.85 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFK--------YQD----------YVDAYLRLAAIAKARNNLQLSIELVNEA 257 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a 257 (760)
...++..-|+-++..|+|.+|...|..++.. .|. ....+.+++.|++..|+|-++++....+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3467888999999999999999999988732 243 3456889999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 258 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 258 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
+..+|.+..+++..|.++...-+..+|..-|..++.+.|.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 9999999999999999999999999999999999999886
No 260
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0009 Score=62.65 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=85.4
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHH--------CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDN----------CETLKALGHIYVQLGQIEKAQELLRKAA 75 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al 75 (760)
+.++...|+-++..|+|.+|...|..++.. .|.. ...+.+++.|++..|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456788999999999999999999988742 3443 4567888999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 76 KIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 76 ~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
..+|.+..+++..|.+.. .-+..+|..-|..++.+.|..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999998887 448889999999999988875
No 261
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.39 E-value=0.23 Score=51.49 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=75.4
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH--HHHHHHHHHhc-------CCCCCCchHHHHHH--HHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK--DLFTQVQEAAS-------GSVFVQMPDVWINL--AHV 395 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~p-------~~~~~~~~~~~~~l--a~~ 395 (760)
+.-++|+.+++.++...|.+....+..-. +-...|..|+ ..+.+.+.+.. .+....+..+-..| |..
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 34789999999999999988764433221 1122233333 22223222210 11111233444444 556
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004339 396 YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLR 447 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 447 (760)
++.+|+|.++.-+-.-.... . +.+.++..+|.|++...+|.+|..++..
T Consensus 472 Lysqgey~kc~~ys~WL~~i--a-PS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKI--A-PSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHhcccHHHHHHHHHHHHHh--C-CcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 78999999999887777774 3 4899999999999999999999999875
No 262
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.35 E-value=0.018 Score=59.36 Aligned_cols=168 Identities=13% Similarity=0.128 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHHcCCChHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFK----YQDYVDAYLRLAAIAKA---RNNLQLSIELVNEA-LKVNGKYPNA 267 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~ 267 (760)
.+.+..++-.+|....+|+.-+.+.+.+-.. .+..+.+...+|.++.+ .|+.++|+.++..+ ....+.++++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999998887765 45667778888999988 89999999999994 4556788999
Q ss_pred HHHHHHHHhhc---------CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHH----
Q 004339 268 LSMLGDLELKN---------DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE---- 334 (760)
Q Consensus 268 ~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~---- 334 (760)
+..+|.+|-.. ...++|+..|.++....+ +.+.-.+++.+ +... |.......
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~--~~Y~GIN~AtL-L~~~------------g~~~~~~~el~~ 284 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP--DYYSGINAATL-LMLA------------GHDFETSEELRK 284 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc--cccchHHHHHH-HHHc------------CCcccchHHHHH
Confidence 99999997532 347899999999999875 45555555555 4333 22111111
Q ss_pred ---HHHHHH-h----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 335 ---LYTRVI-V----QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 335 ---~~~~al-~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
.+...+ + -.-.+.+.+..++.+..-.|+++.|+..+.+++...|
T Consensus 285 i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 285 IGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 111111 1 1123455666677777778888888888888887765
No 263
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.33 E-value=0.00039 Score=44.74 Aligned_cols=31 Identities=42% Similarity=0.805 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 46 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 46 (760)
+++.+|.+++..|+|++|+.+|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 264
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.33 E-value=0.25 Score=55.65 Aligned_cols=212 Identities=17% Similarity=0.101 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--c-------HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCC
Q 004339 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--D-------AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGE 116 (760)
Q Consensus 47 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~ 116 (760)
+|......+.......++.+|..+..++...-|. . .......|.+.. .++++.|+...+.++...|....
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455556677777788999998888887654332 1 122223344444 67999999999999999888765
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcch
Q 004339 117 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 196 (760)
Q Consensus 117 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~ 196 (760)
.....++..+|.+..-.|++.+|+.+...+.+... ..+..+-.
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~-------------------------------------~~~~~~l~ 536 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR-------------------------------------QHDVYHLA 536 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH-------------------------------------HcccHHHH
Confidence 55677888889999999999999999888876311 00122234
Q ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHHHH----HHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCChH
Q 004339 197 VTVLFNLARLLEQIHDTV--AASVLYRLIL----FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPN 266 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~--~A~~~~~~~l----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~ 266 (760)
..+.+..+.++..+|+.. .....|...- ...|-+.......+.++...-+++.+..-....+.. .|....
T Consensus 537 ~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~ 616 (894)
T COG2909 537 LWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLL 616 (894)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhH
Confidence 456666788888888433 3333333332 223333333333333333322355544444444332 222221
Q ss_pred ---HHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q 004339 267 ---ALSMLGDLELKNDDWVKAKETFRAASDAT 295 (760)
Q Consensus 267 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (760)
+++.++.+++..|++++|...+.......
T Consensus 617 ~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 617 SRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 23477888888888888888877766644
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.031 Score=54.70 Aligned_cols=162 Identities=14% Similarity=0.083 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q 004339 231 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 310 (760)
Q Consensus 231 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~ 310 (760)
...-+.-+.-....|++.+|...|..++...|.+..+...++.+|...|+.+.|...+...-.......... ..+.+.
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~--l~a~i~ 211 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG--LQAQIE 211 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH--HHHHHH
Confidence 344555666677889999999999999999999999999999999999999999988876544332211111 111110
Q ss_pred -HHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHH
Q 004339 311 -YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 389 (760)
Q Consensus 311 -y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 389 (760)
+... ....+ ...+...+..+|++..+.+.+|..+...|+++.|++.+-..+..+-+. .+..+.
T Consensus 212 ll~qa------------a~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~---~d~~~R 275 (304)
T COG3118 212 LLEQA------------AATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF---EDGEAR 275 (304)
T ss_pred HHHHH------------hcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---cCcHHH
Confidence 1111 11111 133555677899999999999999999999999999888888876532 345555
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 004339 390 INLAHVYFAQGNFALAMKMYQ 410 (760)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~ 410 (760)
-.+-.++...|.-+.+...|+
T Consensus 276 k~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 276 KTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 555555555554333333333
No 266
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.31 E-value=0.00042 Score=44.57 Aligned_cols=31 Identities=42% Similarity=0.912 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 46 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 46 (760)
+|+.+|.+|+..|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3444455555555555555555555544443
No 267
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.23 E-value=0.00073 Score=69.95 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=85.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 004339 353 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 432 (760)
Q Consensus 353 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 432 (760)
-+...+.-+.|+.|+..|.++++++| +++..+.+.+..+++.++|..|+..+.++++. .|....+|+..|.++
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldp-----nca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDP-----NCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAV 82 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCC-----cceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHH
Confidence 34455566778888888888888887 67777888888888888888888888888885 577788888888888
Q ss_pred HHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 433 YEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 433 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
..++++.+|+..|++...+.|+++.+...+..|
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 888888888888888888888888887777666
No 268
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.16 E-value=0.00042 Score=71.65 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=96.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
+-..|..++..+.|+.|+..|.++|.++|+++..+-..+.++++.+++..|+.-+.++++++|....+|+..|.+.. .+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34567778899999999999999999999999999999999999999999999999999999999999999998888 66
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI 129 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 129 (760)
.+.+|+..|+....+.|+. +.+...+..+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd-----~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPND-----PDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcCcCc-----HHHHHHHHHH
Confidence 9999999999999999986 5655555444
No 269
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.16 E-value=0.018 Score=59.52 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=119.5
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCC------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGD------------FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 72 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 72 (760)
+.+..+|.++.+|+.++...-..-. .+.-+.+|++||+.+|.+...+..+-.++......+....-++
T Consensus 10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we 89 (321)
T PF08424_consen 10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWE 89 (321)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5678899999999998877654432 4677889999999999999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHc---cC-CHhHHHHHHHHHHHHHHhcCCC-------------CCHHHHHHHHHHHHHcCC
Q 004339 73 KAAKIDPRDAQAFIDLGELLI---SS-DTGAALDAFKTARTLLKKAGEE-------------VPIEVLNNIGVIHFEKGE 135 (760)
Q Consensus 73 ~al~~~p~~~~~~~~la~~~~---~~-~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~~la~~~~~~g~ 135 (760)
+++..+|+++..|..+-.... .+ .+......|.+++......... ....++..+..+....|.
T Consensus 90 ~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~ 169 (321)
T PF08424_consen 90 ELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGY 169 (321)
T ss_pred HHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCc
Confidence 999999999999988766544 12 6889999999998876554221 124556777888889999
Q ss_pred HHHHHHHHHHHhccc
Q 004339 136 FESAHQSFKDALGDG 150 (760)
Q Consensus 136 ~~~A~~~~~~al~~~ 150 (760)
.+.|+..++-.+..+
T Consensus 170 ~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 170 TERAVALWQALLEFN 184 (321)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999999864
No 270
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.017 Score=56.41 Aligned_cols=127 Identities=18% Similarity=0.154 Sum_probs=88.8
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH--HHHc
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG--ELLI 93 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~ 93 (760)
.-+..+.-.+..|++..|...|..++...|.+..+...++.||...|+.+.|..++...-...... ......+ .++.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~ 214 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLE 214 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHH
Confidence 346667778899999999999999999999999999999999999999999888876543222211 1111111 1111
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004339 94 -SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 149 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 149 (760)
...... ...+.+.+..+|.+ ..+-+.+|..|...|+++.|+..+-.++..
T Consensus 215 qaa~~~~-~~~l~~~~aadPdd-----~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 215 QAAATPE-IQDLQRRLAADPDD-----VEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHhcCCC-HHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111111 12344455556665 788899999999999999999988887764
No 271
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.004 Score=61.26 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+.-+..-|.-|+...+|..|+.+|...|...- ....-+...
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc---------------------------------------~D~dlnavL 121 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKC---------------------------------------ADPDLNAVL 121 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC---------------------------------------CCccHHHHH
Confidence 55667779999999999999999999987310 022235678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 262 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 262 (760)
|.+.|-+....|+|..|+.-+..++..+|.+..++++-|.+++.+.++..|+.+++..+.++.
T Consensus 122 Y~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 122 YTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 889999999999999999999999999999999999999999999999999999998876543
No 272
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.21 Score=47.94 Aligned_cols=206 Identities=12% Similarity=0.021 Sum_probs=146.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHH-HH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR-NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV-KA 284 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A 284 (760)
+.....-..|+.+...++.++|.+..+|...-.++..+ .+..+-+.++..++..+|.+..+|...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 34445667899999999999999888887776666554 45777889999999999999999999998888889887 77
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cC--
Q 004339 285 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KG-- 361 (760)
Q Consensus 285 ~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-- 361 (760)
+.+...++....+ +-.+|...-.+ .... +.++.-+.+....+..+-.|-.+|+..-.+... .|
T Consensus 133 Lef~~~~l~~DaK-NYHaWshRqW~-~r~F------------~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~ 198 (318)
T KOG0530|consen 133 LEFTKLMLDDDAK-NYHAWSHRQWV-LRFF------------KDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVI 198 (318)
T ss_pred HHHHHHHHhcccc-chhhhHHHHHH-HHHH------------hhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCc
Confidence 8888888886555 55556555544 4444 778999999999998877776676654333332 22
Q ss_pred ---ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH-cC--CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 004339 362 ---QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA-QG--NFALAMKMYQNCLRKFYYNTDAQILLYLARTH 432 (760)
Q Consensus 362 ---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 432 (760)
..+.-+.+....+.+.| .+..+|..|.-++.. .| .+..-..+....+.. .....|..+..|..+|
T Consensus 199 ~~~~le~El~yt~~~I~~vP-----~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~-~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 199 SKAELERELNYTKDKILLVP-----NNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQ-LPKRSPFLLAFLLDLY 269 (318)
T ss_pred cHHHHHHHHHHHHHHHHhCC-----CCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhc-cCCCChhHHHHHHHHH
Confidence 23344567778888888 778889888888875 44 244444444444421 2333466666666666
No 273
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.69 Score=48.72 Aligned_cols=89 Identities=4% Similarity=0.065 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC-CHhHHHHHHHHHHH
Q 004339 32 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS-DTGAALDAFKTART 109 (760)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~-~~~~A~~~~~~al~ 109 (760)
.-...|+.++...+.++..|........+.+.+.+--.+|.+++..+|++++.|+.-|.-.. -+ +.+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 44677889999999999999999999888888999999999999999999999999888655 44 79999999999999
Q ss_pred HHHhcCCCCCHHHHHH
Q 004339 110 LLKKAGEEVPIEVLNN 125 (760)
Q Consensus 110 ~~~~~~~~~~~~~~~~ 125 (760)
.+|++ +.+|..
T Consensus 169 ~npds-----p~Lw~e 179 (568)
T KOG2396|consen 169 FNPDS-----PKLWKE 179 (568)
T ss_pred cCCCC-----hHHHHH
Confidence 99997 566543
No 274
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.91 E-value=0.056 Score=48.80 Aligned_cols=114 Identities=18% Similarity=-0.003 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHH
Q 004339 124 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 203 (760)
Q Consensus 124 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~l 203 (760)
...|......|+...++..+.+++.+.....+..... ...+...... .......++..+
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-~~W~~~~r~~--------------------l~~~~~~~~~~l 68 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-EEWVEPERER--------------------LRELYLDALERL 68 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-STTHHHHHHH--------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-cHHHHHHHHH--------------------HHHHHHHHHHHH
Confidence 3345556677888999999999987532110000000 0000000000 001123445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 204 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258 (760)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 258 (760)
+..+...|+++.|+.++.+++..+|.+-.++..+..+|...|++..|+..|.++.
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666554
No 275
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.88 E-value=0.29 Score=50.17 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=69.4
Q ss_pred cHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc
Q 004339 328 HLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKG-------QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 399 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~ 399 (760)
++.+|..+|.++....... ..+.+.+|.+|..-. +...|+..|.++.... ++.+.+.+|.+|..-
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-------~~~a~~~lg~~y~~G 200 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-------NPDAQLLLGRMYEKG 200 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-------CHHHHHHHHHHHHcC
Confidence 4555555555555543222 223445555554321 2246777777777654 477888888777552
Q ss_pred ----CCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc---------------cHHHHHHHHHHHHHhCCC
Q 004339 400 ----GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE---------------QWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 400 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~ 454 (760)
.++.+|+.+|.++... .+....+.++ +++..| +...|..++..+....+.
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~----g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQ----GDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHC----CCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 3788888888888875 2277777777 666665 555566666665555443
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.88 E-value=0.0018 Score=41.58 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777788888888888888888888877774
No 277
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.87 E-value=0.3 Score=50.08 Aligned_cols=166 Identities=21% Similarity=0.213 Sum_probs=106.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccC----
Q 004339 24 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS---- 95 (760)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---- 95 (760)
....+++..|+..+..+-.. ..+.+...++.+|... .+...|+.+|..+. ...++.+.+.||.+|..|
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcc
Confidence 34566777777777777552 2346777777777664 45777888888444 445677788888887743
Q ss_pred -CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 96 -DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG-------EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 96 -~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
++.+|..+|.++........ ..+.+.+|.+|..-. ....|+..|.++...
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a----~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~------------------ 184 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEA----ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL------------------ 184 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhH----HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh------------------
Confidence 67888888888877632210 233677777776642 222566666665431
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
.++.+.+.+|.+|.. ..++.+|..+|.++..... ..+.+.++ ++..
T Consensus 185 ---------------------------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~ 234 (292)
T COG0790 185 ---------------------------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL 234 (292)
T ss_pred ---------------------------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh
Confidence 255677777766654 3477788888888877655 66677777 5555
Q ss_pred cC
Q 004339 244 RN 245 (760)
Q Consensus 244 ~g 245 (760)
.|
T Consensus 235 ~g 236 (292)
T COG0790 235 NG 236 (292)
T ss_pred cC
Confidence 54
No 278
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.81 E-value=0.085 Score=54.62 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=97.9
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH---cCCHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA---QGNFA 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~---~g~~~ 403 (760)
.-.+.-+.+|++|++.+|++...+..+-.+.......+....-+++++..+| .++.+|..+-..... .-.+.
T Consensus 45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-----~~~~LW~~yL~~~q~~~~~f~v~ 119 (321)
T PF08424_consen 45 ALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-----GSPELWREYLDFRQSNFASFTVS 119 (321)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHhccCcHH
Confidence 4456778899999999999999999998888888899999999999999998 678887766554443 33678
Q ss_pred HHHHHHHHHHhhhcCC---C--------c-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 404 LAMKMYQNCLRKFYYN---T--------D-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~---~--------~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
.....|.+++...... . . ..++..+...+.+.|..+.|+..++-.++++-
T Consensus 120 ~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 120 DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 8888888888764211 0 1 55667788888899999999999999999863
No 279
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.76 E-value=0.037 Score=49.99 Aligned_cols=95 Identities=21% Similarity=0.201 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQD----------------------YVDAYLRLAAIAKARNNLQLSIELVNE 256 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 256 (760)
.+...|......++...++..+.+++.+... ...+...++..+...|+++.|+.++..
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3444566667778889999999998866421 134456677888899999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 004339 257 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 257 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (760)
++..+|.+..++..+..+|...|++..|+..|.+...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987755
No 280
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.75 E-value=0.9 Score=47.28 Aligned_cols=443 Identities=12% Similarity=0.087 Sum_probs=219.6
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
.+...|.++..++++.+|..+|.++.....+.+ +++.++..-.+-+++.+.-...+-..-+..|..+...+..|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 456678999999999999999999987655543 333333333344466666666666666677877776666666
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCCCC---------C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-----chhh
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGEEV---------P-IEVLNNIGVIHFEKGEFESAHQSFKDALGDG-----IWLT 154 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~---------~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~ 154 (760)
+.. .+.|..|+..+............+. + ...-...|.++...|.|.++...+++.+..- .|..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 544 7899999998877655432221110 1 1122445788999999999999999987531 1111
Q ss_pred hhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcch-HHHHHHHHHHHHHcC----CHHHHHHHHHHHH---HH
Q 004339 155 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-VTVLFNLARLLEQIH----DTVAASVLYRLIL---FK 226 (760)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~-~~~~~~la~~~~~~g----~~~~A~~~~~~~l---~~ 226 (760)
.. ....+-.-...++-.+... ......|+. -.+.+.+-.++..-. .+--+..++..+. -.
T Consensus 168 d~-----------yd~~vlmlsrSYfLEl~e~-~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 168 DM-----------YDRAVLMLSRSYFLELKES-MSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HH-----------HHHHHHHHhHHHHHHHHHh-cccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 11 1110000001111111110 011122221 122222222222111 1111111111111 11
Q ss_pred ---------------------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cC---CChHHHHHHHHHHhhcCC
Q 004339 227 ---------------------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--NG---KYPNALSMLGDLELKNDD 280 (760)
Q Consensus 227 ---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p---~~~~~~~~la~~~~~~g~ 280 (760)
+|++.-+.-.+-.-.. .+.+++..+++.+... .+ .-...+..+-....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~--~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFM--SDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHh--cChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222211211111 1333333333322221 11 111122233333456677
Q ss_pred HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC---HHHHHHHHHHH
Q 004339 281 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN---LYAANGAGVVL 357 (760)
Q Consensus 281 ~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 357 (760)
...|..++.-.....|.....--+.+..-.+...+..+ ...-.+...=+.++..+-..+-+. +..+..-|.-+
T Consensus 314 T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~D----D~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 314 TEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCED----DESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHL 389 (549)
T ss_pred HHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 88888887776666665221111100000000000000 000012222333444433333332 22344456667
Q ss_pred HHcCC-hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhhhcCC----CcHHH
Q 004339 358 AEKGQ-FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM--------YQNCLRKFYYN----TDAQI 424 (760)
Q Consensus 358 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~--------~~~al~~~~~~----~~~~~ 424 (760)
.+.|. -++|+.+++.++...| .+... .+....+ -...|.+|+.. +...+....-+ .+.++
T Consensus 390 W~~g~~dekalnLLk~il~ft~-----yD~ec-~n~v~~f-vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTN-----YDIEC-ENIVFLF-VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhcc-----ccHHH-HHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 77776 7889999999999887 33322 1111111 11224444321 12222221111 22455
Q ss_pred HHHHHH--HHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHh
Q 004339 425 LLYLAR--THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLS 502 (760)
Q Consensus 425 ~~~la~--~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~ 502 (760)
-..|+. .++..|+|.+|.-+-.=..+++| .+.++.-+|+|+-... .|.+|..+|..|.
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k-------------------~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK-------------------RYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh-------------------hHHHHHHHHHhCC
Confidence 555544 56779999999999888899999 8888988999865543 6788888887764
Q ss_pred h
Q 004339 503 A 503 (760)
Q Consensus 503 ~ 503 (760)
.
T Consensus 523 ~ 523 (549)
T PF07079_consen 523 P 523 (549)
T ss_pred C
Confidence 3
No 281
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.33 Score=47.11 Aligned_cols=207 Identities=13% Similarity=0.140 Sum_probs=125.3
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH---Hhc--CCCcHHH
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKVLEIYP--------DNCETLKALGHIYVQLGQIEKAQELLRKA---AKI--DPRDAQA 84 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~--~p~~~~~ 84 (760)
+.+|......+++++|+..|.+++.... ....+...++.+|...|++..-....... ..- .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 6788889999999999999999986521 12457888999999999876544433332 221 1223333
Q ss_pred HHHHHHHHc--cCCHhHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 85 FIDLGELLI--SSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 85 ~~~la~~~~--~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
...+...+. ...++.-+..+...++........ .....-..++.+|+..|.|..|+.....++..-
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~El----------- 155 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHEL----------- 155 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-----------
Confidence 333333332 235666666666665543332100 012344567888899999999998887776410
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCCcHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-----YQDYVDAYLR 236 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~ 236 (760)
+.....|....++..-..+|....+..++...+..+-.. .|....+.+.
T Consensus 156 --------------------------Kk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 156 --------------------------KKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred --------------------------HhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 011134455667777777888777777777666655432 2333333222
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 237 --LAAIAKARNNLQLSIELVNEALKVN 261 (760)
Q Consensus 237 --la~~~~~~g~~~~A~~~~~~al~~~ 261 (760)
-|.+.+.-.+|.-|..+|-.+++-+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhcc
Confidence 2344456667777888887777654
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.065 Score=49.12 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.+...++..+...|+++.|+..++.++....+ -..+-.+|+.+....|.++.|+..+...... .-.+......|.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDi 168 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhH
Confidence 35567889999999999999999999864322 2345678999999999999999988765321 1123356688999
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCC
Q 004339 275 ELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
+...|+-.+|+..|.+++...+.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCC
Confidence 99999999999999999998644
No 283
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.62 E-value=0.005 Score=39.07 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
+++.+|.++...|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777777777777777777777777777753
No 284
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.58 E-value=0.0034 Score=40.26 Aligned_cols=30 Identities=50% Similarity=0.943 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYP 45 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 45 (760)
+|+.+|.+|...|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345555555555555555555555555544
No 285
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.57 E-value=0.1 Score=54.60 Aligned_cols=143 Identities=11% Similarity=0.040 Sum_probs=94.4
Q ss_pred HHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------c------------------CCCh---HHHHHHHHH
Q 004339 224 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--------N------------------GKYP---NALSMLGDL 274 (760)
Q Consensus 224 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~------------------p~~~---~~~~~la~~ 274 (760)
+..+|.++++++.++.++..+|++..|..++++++-. + +.|- .+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 3456666666666666666666666666666655421 0 1111 145556677
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC-----CHHH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-----NLYA 349 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~ 349 (760)
+.+.|.+..|+++++-++.+.|..++.....+......+. +.++--+.+++........ -+..
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs------------~~y~~Li~~~~~~~~~~~~~~~~~lPn~ 180 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS------------RQYQWLIDFSESPLAKCYRNWLSLLPNF 180 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc------------CCHHHHHHHHHhHhhhhhhhhhhhCccH
Confidence 7888999999999999999998866665554444413334 6776667766665442111 2346
Q ss_pred HHHHHHHHHHcCCh---------------HHHHHHHHHHHHHhc
Q 004339 350 ANGAGVVLAEKGQF---------------DVSKDLFTQVQEAAS 378 (760)
Q Consensus 350 ~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p 378 (760)
.+.++.++...++- +.|...+.+|+...|
T Consensus 181 a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 181 AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 67778888888887 899999999999876
No 286
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.57 E-value=0.0017 Score=64.13 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=81.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCH
Q 004339 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDT 97 (760)
Q Consensus 19 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~ 97 (760)
..+.-.+..|.++.|+..|..++.++|.....+...+.+++.+++...|+.-|..++.++|+....|-..+.... +|++
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 445666788899999999999999999999999999999999999999999999999999988888888888777 7889
Q ss_pred hHHHHHHHHHHHHHHh
Q 004339 98 GAALDAFKTARTLLKK 113 (760)
Q Consensus 98 ~~A~~~~~~al~~~~~ 113 (760)
.+|...+..+.++.-.
T Consensus 199 e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999888888877543
No 287
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.53 E-value=0.042 Score=57.53 Aligned_cols=150 Identities=17% Similarity=0.104 Sum_probs=113.6
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHH--------------CC------------CC---HHHHHHH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------------YP------------DN---CETLKAL 54 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~l 54 (760)
+.-+...|-++.+++.++.++..+|++..|..+++++|-. ++ .| ..+++..
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 4456789999999999999999999999999999988631 11 12 2466777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHc--cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004339 55 GHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELLI--SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 131 (760)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 131 (760)
...+.+.|-+..|+++++-++.++|. ++-....+...|. .++|+--+..+...........-...+...+.++.+++
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 78888999999999999999999999 8776666666555 45787777777765542111100012467788888899
Q ss_pred HcCCH---------------HHHHHHHHHHhcccchh
Q 004339 132 EKGEF---------------ESAHQSFKDALGDGIWL 153 (760)
Q Consensus 132 ~~g~~---------------~~A~~~~~~al~~~p~~ 153 (760)
..++- +.|...+.+|+...|+.
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 89888 89999999999877643
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.52 E-value=1.7 Score=47.57 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
...++.++|..+..+..++.|.++|...-.... ..-.+-.+..|..+.... ..-|.+..
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~------------------~~ecly~le~f~~LE~la---~~Lpe~s~ 853 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGDTEN------------------QIECLYRLELFGELEVLA---RTLPEDSE 853 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHh------------------HHHHHHHHHhhhhHHHHH---HhcCcccc
Confidence 357888999999999999999999876533110 000001111122121111 13355556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
.+-.+|.++...|.-++|...|-+.- .|.- -...+..++++.+|.++.++.. -|.-..+....+.-++..
T Consensus 854 llp~~a~mf~svGMC~qAV~a~Lr~s--~pka------Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~ 923 (1189)
T KOG2041|consen 854 LLPVMADMFTSVGMCDQAVEAYLRRS--LPKA------AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLAD 923 (1189)
T ss_pred hHHHHHHHHHhhchHHHHHHHHHhcc--CcHH------HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhh
Confidence 66677777777777777777665432 1211 1122334455555555443321 122122222233334455
Q ss_pred CCHHHHHHHHHHh
Q 004339 279 DDWVKAKETFRAA 291 (760)
Q Consensus 279 g~~~~A~~~~~~a 291 (760)
++..+|++..+++
T Consensus 924 ~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 924 ANHMEAIEKDRKA 936 (1189)
T ss_pred cchHHHHHHhhhc
Confidence 5666666655554
No 289
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.36 E-value=0.0055 Score=38.85 Aligned_cols=31 Identities=35% Similarity=0.790 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 46 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 46 (760)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666665
No 290
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.36 E-value=0.0029 Score=62.54 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=82.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 004339 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 433 (760)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 433 (760)
+.-....|.++.|++.|..++.++| ....++...+.+++.++....|+..|..++.+ ++....-|-..|.+..
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp-----~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNP-----PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCC-----chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHH
Confidence 3334567889999999999999999 77899999999999999999999999999996 6666788888999999
Q ss_pred HhccHHHHHHHHHHHHHhCC
Q 004339 434 EAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 434 ~~g~~~~A~~~~~~al~~~p 453 (760)
.+|++.+|...|..+++++-
T Consensus 194 llg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred HhhchHHHHHHHHHHHhccc
Confidence 99999999999999998873
No 291
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.34 E-value=0.068 Score=56.70 Aligned_cols=160 Identities=14% Similarity=0.057 Sum_probs=113.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 334 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 334 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
.+.-.+++.+|.+...+..-+..+...|+..+|+.++..++-..|.. ....+++.+|.++.+.|...+|--++..|+
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h---~kdi~lLSlaTiL~RaG~sadA~iILhAA~ 276 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH---NKDIALLSLATVLHRAGFSADAAVILHAAL 276 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc---cccchhhhHHHHHHHcccccchhheeehhc
Confidence 34455677788777666655555568899999999999999987731 234578899999999999999999998888
Q ss_pred hhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH--HhHHhhhhcCHHHHHHHHHHH
Q 004339 414 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS--ASTLQKTRRTADEVRSTVAEL 491 (760)
Q Consensus 414 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~l~~~~~~l~~~~~a~~~l 491 (760)
.. .+.-..-++.+|.++..+|.+......|..+.+..|......-..+.+...+. ...+.+.++.+..+...+.+|
T Consensus 277 ~d--A~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~~nE~keF 354 (886)
T KOG4507|consen 277 DD--ADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRTLNELKEF 354 (886)
T ss_pred cC--CccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 23334448999999999999999999999999999976544333333222111 133555666666655555555
Q ss_pred HHHHHHH
Q 004339 492 ENAVRVF 498 (760)
Q Consensus 492 ~~A~~~~ 498 (760)
.+-...+
T Consensus 355 qk~~~h~ 361 (886)
T KOG4507|consen 355 QKQHDHY 361 (886)
T ss_pred HHHHHHH
Confidence 5544433
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.31 E-value=0.0065 Score=39.52 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 389 WINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
|.+||.+|..+|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555554444
No 293
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.19 E-value=0.032 Score=39.72 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+.++.+|..++++|+|..|..+...++++.|+|..+..-...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4688999999999999999999999999999998766544443
No 294
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.18 E-value=5.8 Score=50.15 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=58.8
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
....+|+..|.+....|+++.|...+-.|... .-+.++...|..++..|+...|+..++..+..+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKES----RLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 56889999999999999999999999888874 358899999999999999999999999999664
No 295
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=1.7 Score=43.62 Aligned_cols=279 Identities=13% Similarity=0.106 Sum_probs=155.9
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHH--CCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCc--
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEI--YPDN--------CETLKALGHIYVQLGQIEKAQELLRKAAK---IDPRD-- 81 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~-- 81 (760)
.+..++......++.+++..|..++.. .|.+ ......+|.+|...|++.+-.......-. .-+..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 367777888888899999999999874 2222 35678899999999998776555544322 22211
Q ss_pred HHHHHHHHHHHc--cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcc
Q 004339 82 AQAFIDLGELLI--SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 158 (760)
Q Consensus 82 ~~~~~~la~~~~--~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 158 (760)
......+...+. .+.+..-+..+..+++-........ ...+-..+..+|+..++|.+|+.....++..-
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rEl-------- 158 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLREL-------- 158 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------
Confidence 112222222222 2345555666666655443321000 12334567888999999999998887776520
Q ss_pred cchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-----CCcHHH
Q 004339 159 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-----QDYVDA 233 (760)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~ 233 (760)
+.+...+....++..-..+|+...+..+|...+..+-... |....+
T Consensus 159 -----------------------------KKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 159 -----------------------------KKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred -----------------------------HhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 0111233345566666777777788888877776664321 222222
Q ss_pred H--HHHHHHHHHcCCHHHHHHHHHHHHHHcC---CChHHHH---HHHHHHhhcCCHHHH--HHHHHHhhhcCCCCChHHH
Q 004339 234 Y--LRLAAIAKARNNLQLSIELVNEALKVNG---KYPNALS---MLGDLELKNDDWVKA--KETFRAASDATDGKDSYAT 303 (760)
Q Consensus 234 ~--~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~---~la~~~~~~g~~~~A--~~~~~~al~~~~~~~~~~~ 303 (760)
- +.-|.++..-.+|.-|..+|-.+++-+. .+..+.. .+-.+-...+..++. +-.-+.++. ..+.+..++
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~-y~g~~i~Am 288 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK-YAGRDIDAM 288 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh-ccCcchHHH
Confidence 1 2224445555778888888888776542 1222222 222222233333333 333344444 333355666
Q ss_pred HHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 304 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
..++.. +... ...+|..|+.-|..-+..+|
T Consensus 289 kavAeA-~~nR----------SLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 289 KAVAEA-FGNR----------SLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHH-hcCC----------cHHHHHHHHHHhHHHHhcCh
Confidence 555555 3221 12677777777777666655
No 296
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=2.4 Score=45.42 Aligned_cols=238 Identities=13% Similarity=-0.013 Sum_probs=132.3
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY--QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 269 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 269 (760)
..|..+...+..+.++...|+.+.|+.++...+... .-..-+++.+|.++.-..+|..|...+..+.....-..-.|.
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~ 341 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYT 341 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHH
Confidence 456677777778888888888778888887777511 112345667788888888888888888887776655444444
Q ss_pred HHH-HHHhh--------cCCHHHHHHHHHHhh---hcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHH
Q 004339 270 MLG-DLELK--------NDDWVKAKETFRAAS---DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 337 (760)
Q Consensus 270 ~la-~~~~~--------~g~~~~A~~~~~~al---~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 337 (760)
.++ -+++. .|+-+.|..+++... ...|.+.+.-- .-..+|..+-.
T Consensus 342 Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~-----------------------f~~RKverf~~ 398 (546)
T KOG3783|consen 342 YFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK-----------------------FIVRKVERFVK 398 (546)
T ss_pred HHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH-----------------------HHHHHHHHHhc
Confidence 444 33322 123333333332221 11121111110 11111211111
Q ss_pred HHHhhCCCCHHH--HHHHHHHHHH--cCChHHHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 338 RVIVQHTSNLYA--ANGAGVVLAE--KGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 338 ~al~~~p~~~~~--~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
+. ..++..+.+ ++.++.++-. .....+.. -+...+ ..|....+ +..-.++.+|.++..+|+-..|..+|..+
T Consensus 399 ~~-~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~-~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~ 475 (546)
T KOG3783|consen 399 RG-PLNASILLASPYYELAYFWNGFSRMSKNELE-KMRAEL-ENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQ 475 (546)
T ss_pred cc-cccccccccchHHHHHHHHhhcccCChhhHH-HHHHHH-hccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 011111111 2333333321 11222222 111111 23322111 22335677899999999999999999998
Q ss_pred Hhhhc-CCCc----HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCC
Q 004339 413 LRKFY-YNTD----AQILLYLARTHYEAEQ-WQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 413 l~~~~-~~~~----~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 455 (760)
+.... ...+ |.++|.+|..|+.+|. ..+|..++.+|-....++
T Consensus 476 ~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 476 VEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 85421 1122 8899999999999999 999999999999877443
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.33 Score=43.52 Aligned_cols=140 Identities=12% Similarity=0.074 Sum_probs=96.7
Q ss_pred hcHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 004339 327 THLEKAKELYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 404 (760)
+..++|+..|..+-+-.-.. ..+....|.+....|+...|+..|..+-.-.|.... ..-.+.+.-|.++...|-|++
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~-~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI-GRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch-hhHHHHHHHHHHHhccccHHH
Confidence 67777777777655543322 335677788889999999999999988776642100 112345666788899999988
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 405 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 405 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
-....+..-.- .+|-...+.-.||.+-++.|++..|..+|.+... +...|....+.+.++..+
T Consensus 151 V~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 151 VSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 77666544332 2333466777899999999999999999998876 545556666666665443
No 298
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.99 E-value=3.1 Score=49.06 Aligned_cols=61 Identities=20% Similarity=0.038 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhc-CCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHH
Q 004339 267 ALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 340 (760)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al 340 (760)
.......+|+-..++.+|-..+...-.. .......+++..|.+ +... ++-+-|...|..+.
T Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~~~~ 867 (932)
T PRK13184 806 LLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCY-LALT------------EDREAAKAHFSGCR 867 (932)
T ss_pred hhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHH-HHhc------------CchhHHHHHHhhcc
Confidence 4445556667777888887777433221 112244556666666 5555 66666666666655
No 299
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.98 E-value=0.87 Score=49.70 Aligned_cols=244 Identities=10% Similarity=0.057 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
++.+|..+|......-.++.|...|-+.-.... ..+...+.. ...
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~G-------------------------ik~vkrl~~----------i~s 735 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAG-------------------------IKLVKRLRT----------IHS 735 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhccccc-------------------------hhHHHHhhh----------hhh
Confidence 479999999988887788888887766543110 000000000 000
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCChHHHHHHHHHHh
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLGDLEL 276 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~ 276 (760)
--...|.+-.--|.|++|.+.|-.+-..+ .-..++...|++-...++++..-.-. .....++..+|..+.
T Consensus 736 ~~~q~aei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa 807 (1189)
T KOG2041|consen 736 KEQQRAEISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFA 807 (1189)
T ss_pred HHHHhHhHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHH
Confidence 11233445555689999998886553221 12334556677766665554321111 112348889999999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004339 277 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 356 (760)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 356 (760)
....|..|.++|...-... ++..+ |+.. ..|..- +.+...-|.+...+-.+|.+
T Consensus 808 ~~~~We~A~~yY~~~~~~e---------~~~ec-ly~l------------e~f~~L----E~la~~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 808 EMMEWEEAAKYYSYCGDTE---------NQIEC-LYRL------------ELFGEL----EVLARTLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHhccchH---------hHHHH-HHHH------------HhhhhH----HHHHHhcCcccchHHHHHHH
Confidence 9999999999998654321 12333 4443 334332 33334457888888899999
Q ss_pred HHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc
Q 004339 357 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 436 (760)
Q Consensus 357 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 436 (760)
+...|.-++|.+.|-+.- .|.+ .......++++.+|.++-++. .-|.-..+....+.-+...+
T Consensus 862 f~svGMC~qAV~a~Lr~s----------~pka---Av~tCv~LnQW~~avelaq~~----~l~qv~tliak~aaqll~~~ 924 (1189)
T KOG2041|consen 862 FTSVGMCDQAVEAYLRRS----------LPKA---AVHTCVELNQWGEAVELAQRF----QLPQVQTLIAKQAAQLLADA 924 (1189)
T ss_pred HHhhchHHHHHHHHHhcc----------CcHH---HHHHHHHHHHHHHHHHHHHhc----cchhHHHHHHHHHHHHHhhc
Confidence 999999999998886542 1221 223456667788887765432 12222223333444455667
Q ss_pred cHHHHHHHHHHH
Q 004339 437 QWQDCKKSLLRA 448 (760)
Q Consensus 437 ~~~~A~~~~~~a 448 (760)
+.-+|++.++++
T Consensus 925 ~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 925 NHMEAIEKDRKA 936 (1189)
T ss_pred chHHHHHHhhhc
Confidence 777777777665
No 300
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.94 E-value=0.079 Score=45.25 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhh
Q 004339 385 MPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 461 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 461 (760)
.....+++|+++.... +..+.+.+++..+..-+....-+.+++|+..+++.|+|+.++.+....++..|+|..+.--
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3667788999998776 4667889999988732223338889999999999999999999999999999999876543
Q ss_pred HHHH
Q 004339 462 AGVA 465 (760)
Q Consensus 462 la~~ 465 (760)
--.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 3333
No 301
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.90 E-value=0.15 Score=49.06 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHHcCCHHH-------HHHHHHHHHhhhcCCC----cHHHHHH
Q 004339 361 GQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFAL-------AMKMYQNCLRKFYYNT----DAQILLY 427 (760)
Q Consensus 361 g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~la~~~~~~g~~~~-------A~~~~~~al~~~~~~~----~~~~~~~ 427 (760)
..++.|+..|.-|+-... +..+...+.+++.+|++|..+|+... |+..|.+++.....|. ...+++.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 345566665555554321 00111235677788888888887444 4444444444322221 2677888
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
+|.++.+.|++++|+.+|.+++...-
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 88888889999999988888886543
No 302
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=2 Score=41.92 Aligned_cols=205 Identities=14% Similarity=0.076 Sum_probs=122.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHHcC--CChHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLSIELVN---EALKVNG--KYPNA 267 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~---~al~~~p--~~~~~ 267 (760)
..+|+-....+++++|+..|.+++.... ....+...++.+|...|++..--.... .+...+. ....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5677778888999999999999996532 223467889999999998765443332 2222221 11112
Q ss_pred HHHHH-HHHhhcCCHHHHHHHHHHhhhcCCCCC-----hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh
Q 004339 268 LSMLG-DLELKNDDWVKAKETFRAASDATDGKD-----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 341 (760)
Q Consensus 268 ~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 341 (760)
...+. .+-.....++.-+..+...++...... ...-..+..+ ++.. |.|..|+....-++.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l-~y~~------------~~YsdalalIn~ll~ 153 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYL-LYKT------------GKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc------------ccHHHHHHHHHHHHH
Confidence 21111 112223345555555555554322110 0111233444 5666 899999988776654
Q ss_pred h------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 342 Q------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--PDVWINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 342 ~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
- .|+-..++..-..+|....+..++...+..|.........|.. +..-..-|...+.-.+|.-|..+|-.++
T Consensus 154 ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~ 233 (421)
T COG5159 154 ELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEAL 233 (421)
T ss_pred HHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHH
Confidence 2 2444556667778888888888888888777665421111111 1222333666777789999999999999
Q ss_pred hhhcC
Q 004339 414 RKFYY 418 (760)
Q Consensus 414 ~~~~~ 418 (760)
.-|..
T Consensus 234 Egft~ 238 (421)
T COG5159 234 EGFTL 238 (421)
T ss_pred hcccc
Confidence 87644
No 303
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.83 E-value=0.037 Score=39.38 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=22.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 54 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 54 (760)
+|.+|..+++.|+|..|..+++.+|+..|+|..+....
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 45566666666666666666666666666665554443
No 304
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.82 E-value=0.071 Score=44.16 Aligned_cols=103 Identities=18% Similarity=0.179 Sum_probs=63.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccCC
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCE---TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 96 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 96 (760)
+|..++..|++-+|+.+.+.++..++++.. .+..-|.++..+ +......+....+.+|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl~------- 62 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLLG------- 62 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHHH-------
Confidence 467789999999999999999998887653 444445555433 2222222222222222
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004339 97 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 149 (760)
Q Consensus 97 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 149 (760)
++++|.++..+.|.. +..++.+|.-+-...-|.+++...++++.+
T Consensus 63 ---sve~~s~a~~Lsp~~-----A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 ---SVECFSRAVELSPDS-----AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---hHHHHHHHhccChhH-----HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 455666666666664 566666666666666666666666666544
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.81 E-value=0.16 Score=47.37 Aligned_cols=105 Identities=10% Similarity=0.170 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----H
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----A 422 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~ 422 (760)
..++..+|..|...|+++.|+..|.++.....+.. ...++++++..+.+..+++.....++.++-.......+ .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 34788999999999999999999999988753211 34678899999999999999999999999887655554 3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
.+...-|..+...++|..|...|-.++.-..
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 3455677788889999999999987765543
No 306
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.81 E-value=0.3 Score=40.71 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=70.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhcC----CCCC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC----CCc-
Q 004339 354 GVVLAEKGQFDVSKDLFTQVQEAASG----SVFV---QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----NTD- 421 (760)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~- 421 (760)
|.-...-|-|.+|...+.++++.... ..|. -+..++-.|+..+..+|+|++++..-..++..|.. ..+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 34445678999999999999987631 1111 12456778899999999999999999988887632 112
Q ss_pred ----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 422 ----AQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 422 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
+.+.+..|.++...|+.++|+..|+.+.++
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 556678889999999999999999998765
No 307
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.77 E-value=0.016 Score=37.73 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
++..||.+|..+|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.76 E-value=0.84 Score=44.01 Aligned_cols=101 Identities=12% Similarity=0.193 Sum_probs=61.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC-------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHH
Q 004339 352 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 424 (760)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 424 (760)
.||.+|+..|.|..-..++.+.-.......-. ....+|..-..+|..+++-..-..+|++++..-..-++|.+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 47777777777777666666665544311100 12344555566777777777777777777775434444333
Q ss_pred H----HHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 425 L----LYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 425 ~----~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
. -+=|..+...|+|++|...|-.|++-.
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 3 234556777788888877777777654
No 309
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.75 E-value=0.027 Score=54.75 Aligned_cols=73 Identities=25% Similarity=0.343 Sum_probs=57.4
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
+..|.-....|+.++|..+|+.++.+.|.++.++..+|......++.-+|-.+|-+++.++|.+..++.+.+.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4455556777888888888888888888888888888888887788888888888888888888877766554
No 310
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=2.7 Score=45.29 Aligned_cols=156 Identities=16% Similarity=0.111 Sum_probs=107.7
Q ss_pred cCCHHHHHHHHHHHHHH------------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCC---------
Q 004339 210 IHDTVAASVLYRLILFK------------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGK--------- 263 (760)
Q Consensus 210 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~--------- 263 (760)
...|.+|...|.-+... +|.+++.++.++.++..+|+.+-|..++.+++=. .|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34567777777776644 4677899999999999999999888877776632 221
Q ss_pred -------ChH---HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHH
Q 004339 264 -------YPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 333 (760)
Q Consensus 264 -------~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 333 (760)
+-. +++.....+...|.|..|.++++-++.+.|..++.....+..+..++. .+|.=-+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALra------------reYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRA------------REYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHH------------HhHHHHH
Confidence 111 223334445678999999999999999999878888777776623333 6666666
Q ss_pred HHHHHH-----HhhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhc
Q 004339 334 ELYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 378 (760)
Q Consensus 334 ~~~~~a-----l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p 378 (760)
.+++.. +..-|+..+ -..+|..|..... -..|...+.+|+...|
T Consensus 399 ~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 666654 334455443 2345666665544 5678889999998876
No 311
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.36 Score=53.11 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004339 519 THVEYCKHLLDAAKIHREA 537 (760)
Q Consensus 519 ~~~~~~~~~l~~~~~~~~~ 537 (760)
.+++..+.+|.+.+...++
T Consensus 214 Kgv~~~qe~La~~qe~eE~ 232 (1064)
T KOG1144|consen 214 KGVRAMQEALAKRQEEEER 232 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 312
>PRK10941 hypothetical protein; Provisional
Probab=95.57 E-value=0.099 Score=51.96 Aligned_cols=75 Identities=20% Similarity=0.176 Sum_probs=61.5
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
+..+-.+|...+++..|+.+.+.++...|+++.-+...|.+|.++|.+..|+.-++..+...|+++.+-.....+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 345666778888999999999999999999888888899999999999999998888888888888776554443
No 313
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.56 E-value=0.13 Score=46.02 Aligned_cols=85 Identities=24% Similarity=0.164 Sum_probs=75.8
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
.-+..++.+..+-...++.+.+..++..+--+.|..+..-..-|.+++..|++.+|+.+|+.+....|..+.+--.++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34556778888889999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred Hc-cCC
Q 004339 92 LI-SSD 96 (760)
Q Consensus 92 ~~-~~~ 96 (760)
+. .++
T Consensus 88 L~~~~D 93 (160)
T PF09613_consen 88 LYALGD 93 (160)
T ss_pred HHHcCC
Confidence 77 554
No 314
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.51 E-value=0.39 Score=46.20 Aligned_cols=114 Identities=13% Similarity=0.110 Sum_probs=71.4
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 96 DTGAALDAFKTARTLLKKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.++.|+..|.-|+-...-..... .+.++..+|++|...|+.+....++.+|+..-
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y----------------------- 148 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFY----------------------- 148 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH-----------------------
Confidence 56677777776664433221111 36778899999999999777777777776521
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH-HHHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-DAYLRLAA 239 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~ 239 (760)
..++.... .....-+...+++.+|.++.+.|++++|..+|.+++....... ..+..+|.
T Consensus 149 ------~~a~~~e~-~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 149 ------EEAYENED-FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred ------HHHHHhCc-CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 11111111 1112224567899999999999999999999999997543222 34444443
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.46 E-value=0.27 Score=44.00 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.-...+..+..+-...++.+.+..++..+--+.|..+..-+.-|.++...|++.+|+.+|+.+....|..+.+-..++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34567777888888889999999999999899999999999999999999999999999999988889999999999999
Q ss_pred HhhcCCHH
Q 004339 275 ELKNDDWV 282 (760)
Q Consensus 275 ~~~~g~~~ 282 (760)
+...|+..
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 98888743
No 316
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=3.3 Score=41.61 Aligned_cols=271 Identities=12% Similarity=0.068 Sum_probs=157.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--cCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHcCCChH-
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFK--YQDY--------VDAYLRLAAIAKARNNLQLSIELVNEAL---KVNGKYPN- 266 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~- 266 (760)
+..+......+++.+++..|..++.. .|.. -.....++.++...|+..+-..++...- ...+....
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 55666666777788899999888864 2221 2356788999999998877655544332 22222111
Q ss_pred -HHHHHHH-HHhhcCCHHHHHHHHHHhhhcCCCCCh-----HHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHH
Q 004339 267 -ALSMLGD-LELKNDDWVKAKETFRAASDATDGKDS-----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 339 (760)
Q Consensus 267 -~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 339 (760)
+...+.. +....+....-+..+...++....... ..-..+..+ |+.. ++|.+|+.+....
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~L-y~d~------------~~YteAlaL~~~L 154 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRL-YNDT------------KRYTEALALINDL 154 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHhh------------HHHHHHHHHHHHH
Confidence 1111211 122223344445555544443221110 111234555 7777 9999999887766
Q ss_pred Hhh----C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC-CC-chHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 340 IVQ----H--TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQ-MPDVWINLAHVYFAQGNFALAMKMYQN 411 (760)
Q Consensus 340 l~~----~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 411 (760)
+.- + +.-+.++..=..+|....+..+|...+..|......-.. |. .+.+-..-|.++..-.+|.-|..+|-.
T Consensus 155 ~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyE 234 (411)
T KOG1463|consen 155 LRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYE 234 (411)
T ss_pred HHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHH
Confidence 542 2 223345556677788888999999888888765421111 11 122233447777777899999999999
Q ss_pred HHhhhcCCCc-HHH---HHHHHHHHHHhccHHHHHHH--HHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHH
Q 004339 412 CLRKFYYNTD-AQI---LLYLARTHYEAEQWQDCKKS--LLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVR 485 (760)
Q Consensus 412 al~~~~~~~~-~~~---~~~la~~~~~~g~~~~A~~~--~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~ 485 (760)
++.-|..-.+ +.+ +-++-.|-..++..++-... -+.+++....+..+.-.+|.++ ..|.+.++.
T Consensus 235 AfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~----------~nRSLkdF~ 304 (411)
T KOG1463|consen 235 AFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAF----------GNRSLKDFE 304 (411)
T ss_pred HHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHh----------cCCcHHHHH
Confidence 9998754444 333 33344444455666654443 3556665555555555555543 357778888
Q ss_pred HHHHHHHHH
Q 004339 486 STVAELENA 494 (760)
Q Consensus 486 ~a~~~l~~A 494 (760)
.|+..|..-
T Consensus 305 ~AL~~yk~e 313 (411)
T KOG1463|consen 305 KALADYKKE 313 (411)
T ss_pred HHHHHhHHH
Confidence 888777643
No 317
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.42 E-value=7.8 Score=45.82 Aligned_cols=360 Identities=9% Similarity=-0.026 Sum_probs=186.6
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhc----C---CHHHHHHHHHHHHhcCCCcHHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQL----G---QIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
..+....+++....|+.|+..|+++....|.. .++.+.+|..+..+ | .+.+|+.-|++.- -.|.-|--|
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 555 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEY 555 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHH
Confidence 34566677888899999999999999999874 67888888877654 2 4778888887653 456677778
Q ss_pred HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchh
Q 004339 86 IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162 (760)
Q Consensus 86 ~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 162 (760)
+..|.+|. .|+|.+-+++|.-|++..|..+.-.. ..+.+.|-.+.+ .+-..|....--++...|......
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----- 628 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLY--KHRREALVFMLLALWIAPEKISSR----- 628 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCcccccch-----
Confidence 88888888 78999999999999999988732110 111222222221 122344444444444433111000
Q ss_pred hhhhhhhHHHHHHhHHhhhhhhccCCC-----ccCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHH
Q 004339 163 YVIDASASMLQFKDMQLFHRFENDGNH-----VELPWNKVT-VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 236 (760)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 236 (760)
....++..+..-... +...|.... ..+.+-.. +-.|..---..+|+++....|- .+...
T Consensus 629 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 693 (932)
T PRK13184 629 ------------EEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLS-FWSGFTPFLPELFQRAWDLRDY--RALAD 693 (932)
T ss_pred ------------HHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHH-HHhcCchhhHHHHHHHhhcccH--HHHHH
Confidence 001112211111111 111111111 11111111 1224444445566666655443 56666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-----cCCChH--------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHH
Q 004339 237 LAAIAKARNNLQLSIELVNEALKV-----NGKYPN--------ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 303 (760)
Q Consensus 237 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (760)
.-.+...+|.++-+.......-.. .|.+.. .+..-..+......++++...+.. +.+. ...
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~ 767 (932)
T PRK13184 694 IFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---TDPT---LIL 767 (932)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---CCHH---HHH
Confidence 666777888887665554433321 122111 111112223333456666553332 1111 111
Q ss_pred HHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC
Q 004339 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 383 (760)
Q Consensus 304 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 383 (760)
+ +-. ++......... ..-+-.+++.+.+...-.............+|....++.+|-.++...-... ...
T Consensus 768 ~-~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 837 (932)
T PRK13184 768 Y-AFD--LFAIQALLDEE----GESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDL---LLD 837 (932)
T ss_pred H-HHH--HHHHHHHHhcc----chHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhh---hcc
Confidence 1 111 11110000000 0122223333222221111223345556677778888888888774322111 111
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
+...++...|..+...++-.-|...|..+..
T Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 838 EYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred ccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 4567788888888888888888888888874
No 318
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.42 E-value=0.22 Score=41.35 Aligned_cols=50 Identities=8% Similarity=-0.014 Sum_probs=35.9
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 376 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 376 (760)
..+-.++++|.++..+.|..+..++.+|.-+-....|.++..-.++++.+
T Consensus 58 ~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 58 RYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 44556778888888888888777777777666666677777666666654
No 319
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=4.8 Score=43.22 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 65 EKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSF 143 (760)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 143 (760)
....+.+.......|.++...+..+.++. .|+.+.|+..+...+...-. ....-.++.+|.++..+.+|..|...+
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k---Q~~~l~~fE~aw~~v~~~~~~~aad~~ 326 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMK---QVKSLMVFERAWLSVGQHQYSRAADSF 326 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444555555667877777777777666 67788888888877762111 112456677888888888888888888
Q ss_pred HHHhccc
Q 004339 144 KDALGDG 150 (760)
Q Consensus 144 ~~al~~~ 150 (760)
..+.+..
T Consensus 327 ~~L~des 333 (546)
T KOG3783|consen 327 DLLRDES 333 (546)
T ss_pred HHHHhhh
Confidence 8887643
No 320
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.35 E-value=0.22 Score=40.34 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHH
Q 004339 33 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD--AQAFIDLGELL 92 (760)
Q Consensus 33 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~ 92 (760)
.+..+++.+..+|++..+.+.+|..+...|+++.|+..+-.++..++++ ..+...+-.++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999988765 33433333333
No 321
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.29 E-value=3 Score=40.33 Aligned_cols=213 Identities=14% Similarity=0.109 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-----CCChH-HHHHHHHHHhhcCC
Q 004339 211 HDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVN-----GKYPN-ALSMLGDLELKNDD 280 (760)
Q Consensus 211 g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~-~~~~la~~~~~~g~ 280 (760)
..+++|+..|++++.+.|.- ..++-.+..+++.++++.+-+..|.+++..- .+..+ ....+-..-....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 48899999999999988753 3466778888999999999998888877532 22222 11222222223334
Q ss_pred HHHHHHHHHHhhhc---CCCC--ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC----------
Q 004339 281 WVKAKETFRAASDA---TDGK--DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS---------- 345 (760)
Q Consensus 281 ~~~A~~~~~~al~~---~~~~--~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------- 345 (760)
..--..+|+..+.. .... .......||.+ |+.. +.|.+-...+.+.-.....
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl-~fd~------------~e~~kl~KIlkqLh~SCq~edGedD~kKG 187 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKL-YFDR------------GEYTKLQKILKQLHQSCQTEDGEDDQKKG 187 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhh-heeH------------HHHHHHHHHHHHHHHHhccccCchhhhcc
Confidence 44444444443331 1110 11123467888 8877 7777666666655433211
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-
Q 004339 346 --NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD- 421 (760)
Q Consensus 346 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 421 (760)
-..+|..-..+|..+.+-..-..+|.+++.+...-.+|-. ..+.-.=|..+++.|+|.+|-..|-.|.+.+....+
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp 267 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP 267 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc
Confidence 1234444566777888888888899999988652222211 111222356678889999999988888887644333
Q ss_pred --HH--HHHHHHHHHHHhc
Q 004339 422 --AQ--ILLYLARTHYEAE 436 (760)
Q Consensus 422 --~~--~~~~la~~~~~~g 436 (760)
.. -|+-||..+.+.|
T Consensus 268 RRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 268 RRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred chhHHHHHHHHHHHHHHcC
Confidence 22 3445566666554
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.21 E-value=0.034 Score=34.46 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
.+++.+|.++..+|+++.|+.+|.+++.+.|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666777777777777777777777766664
No 323
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.13 E-value=5.1 Score=44.36 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=15.7
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 427 YLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 427 ~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
..++.|+...++..-+..+.++..+-.
T Consensus 821 ~~~Rg~L~rkr~~~ri~~~~K~~~l~k 847 (1259)
T KOG0163|consen 821 RIARGYLARKRHRPRIAGIRKINALLK 847 (1259)
T ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 455556666666666666666655543
No 324
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=1.8 Score=46.52 Aligned_cols=177 Identities=17% Similarity=0.020 Sum_probs=115.2
Q ss_pred CHhHHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--chhhhhcccchhhhhh
Q 004339 96 DTGAALDAFKTARTLLKKAG-------EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG--IWLTLLDSKTKTYVID 166 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~ 166 (760)
-|.+|...|.-++...+.+. .+.+...+..++.+...+|+.+.|...+.++|=.- .+.+.... .
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~-------~ 325 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIP-------F 325 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccc-------c
Confidence 58889888888887766543 35578899999999999999999998888876310 00000000 0
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-cHHHHHHHHHHH-
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKV---TVLFNLARLLEQIHDTVAASVLYRLILFKYQD-YVDAYLRLAAIA- 241 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~- 241 (760)
.+ .....-..|.+- .+++.....+.+.|-+..|.+++.-++.++|. ++.+...+..+|
T Consensus 326 sg-----------------~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 326 SG-----------------NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cc-----------------cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 00 000001233333 34455566677889999999999999999997 777777766666
Q ss_pred HHcCCHHHHHHHHHHH-----HHHcCCChHHHHHHHHHHhhcCC---HHHHHHHHHHhhhcCCC
Q 004339 242 KARNNLQLSIELVNEA-----LKVNGKYPNALSMLGDLELKNDD---WVKAKETFRAASDATDG 297 (760)
Q Consensus 242 ~~~g~~~~A~~~~~~a-----l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 297 (760)
++..+|.=-+.+++.. +...|+.+ .-..++.+|..... -..|...+.+|+...|.
T Consensus 389 LrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 389 LRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 4555666566655544 23334433 23355666666555 57888889999988774
No 325
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.70 E-value=0.049 Score=33.65 Aligned_cols=30 Identities=50% Similarity=0.864 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYP 45 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 45 (760)
+++.+|.+++..|++..|+.+|.+++...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345555555555555555555555555444
No 326
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.70 E-value=3.2 Score=37.52 Aligned_cols=128 Identities=17% Similarity=0.099 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCC-c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC--h--HHHHHHHHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQD-Y-VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY--P--NALSMLGDL 274 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~--~~~~~la~~ 274 (760)
|.-+.-+...+..++|+..|..+-+..-. + ..+.++.+.+....|+...|+..|..+-...|-. . .+...-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 34444555667778888887776654422 2 3456677777778888888888887766544321 1 134455566
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 341 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 341 (760)
+...|.|+......+.+-.-..+....+.-.||.. -++. |++..|...|..+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglA-a~ka------------gd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLA-AYKA------------GDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHH-HHhc------------cchHHHHHHHHHHHc
Confidence 66777776665555443322211123333344444 4444 555555555555443
No 327
>PRK10941 hypothetical protein; Provisional
Probab=94.69 E-value=0.37 Score=48.00 Aligned_cols=76 Identities=9% Similarity=-0.067 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.+.++-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.++|.+..|..-++..+...|+++.+-.....+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4455666777777888888888888777787777777777778888888888777777777777777765544443
No 328
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.67 E-value=0.36 Score=39.09 Aligned_cols=75 Identities=11% Similarity=0.110 Sum_probs=48.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 410 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (760)
+..+++.+..+|++..+.+.+|..+...|+++.|++.+-.++..+++. .+..+.-.+-.++..+|.-+.-..-|+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~---~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY---EDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC---CCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---cccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 455677788888888888888888888888888888888888877632 334555555555555555443333333
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.55 E-value=7.3 Score=41.01 Aligned_cols=103 Identities=8% Similarity=0.161 Sum_probs=55.1
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCCCCchHHHH---HHHHHHHHc----CCHHHHHHHHHHHHhhh-cCCCcHHHHHHHHH
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI---NLAHVYFAQ----GNFALAMKMYQNCLRKF-YYNTDAQILLYLAR 430 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~---~la~~~~~~----g~~~~A~~~~~~al~~~-~~~~~~~~~~~la~ 430 (760)
..|+.++|+..+-..-.+.| +...... .+..++-.. |..-...+.+.-+-++. .+..+..++-+.+.
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (831)
T PRK15180 710 TEGRLDEALSVLISLKRIEP-----DVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAAL 784 (831)
T ss_pred ccccHHHHHHHHHhhhccCc-----cHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHh
Confidence 35778888888777766666 3332221 122222111 11111111111111111 24555666666666
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 431 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 431 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
-...+.+|.+|+.+|++.-+.+.....+...+..|.
T Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (831)
T PRK15180 785 NAMHLRDYTQALQYWQRLEKVNGPTEPVTRQISTCI 820 (831)
T ss_pred hHhHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHH
Confidence 677889999999999998887644433444455543
No 330
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=6.6 Score=40.53 Aligned_cols=132 Identities=13% Similarity=0.105 Sum_probs=93.0
Q ss_pred hcHHHHHHHHHHHHhhC----CC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc-CCCCCCchHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQH----TS-----NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~----p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~la~~~ 396 (760)
+.+.+|..+-...+... -. ....|+.+..+|...|+...-...+...+.... .......+...+.|-..|
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y 219 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNY 219 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH
Confidence 67777777666554321 11 234677788888888987777777776665543 111223455667778899
Q ss_pred HHcCCHHHHHHHHHHHHhhhcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 397 FAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
+..+.|+.|-....++.---...++ +..++++|++..-+++|..|.++|-+|+...|++..+
T Consensus 220 L~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~al 283 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAAL 283 (493)
T ss_pred hhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhh
Confidence 9999999998887766421111122 7788999999999999999999999999999986444
No 331
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.50 E-value=0.081 Score=51.75 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=62.6
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA-LGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
++....|+++..|...+......|-|.+--..|.+++..+|.|++.|.. -+.-+...+++..+...|.++++.+|.+|.
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3445567777777777777777777777788888888888888877776 445566667888888888888888888777
Q ss_pred HHHHHHH
Q 004339 84 AFIDLGE 90 (760)
Q Consensus 84 ~~~~la~ 90 (760)
.|+..-.
T Consensus 178 iw~eyfr 184 (435)
T COG5191 178 IWIEYFR 184 (435)
T ss_pred HHHHHHH
Confidence 7765443
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.49 E-value=0.2 Score=52.00 Aligned_cols=125 Identities=10% Similarity=0.090 Sum_probs=103.3
Q ss_pred hhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH
Q 004339 326 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405 (760)
Q Consensus 326 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 405 (760)
.|++-.|-.-...++...|..+......+.+...+|.|+.|...+.-+-.+.. ....+...+-.....+|+++.|
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~-----s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIG-----TTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhc-----CCchHHHHHHHhhhchhhHHHH
Confidence 48899999999999999999999999999999999999999998877766554 3345556666778889999999
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 406 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 406 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
...-.-.+.. .-.++++....+.....+|-+++|..+|++.+.++|....
T Consensus 377 ~s~a~~~l~~--eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 377 LSTAEMMLSN--EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHhcc--ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 9988777763 4556778777777778899999999999999999886533
No 333
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.41 E-value=0.6 Score=43.46 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-ChhHHhhH
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS-NYTLRFDA 462 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 462 (760)
.-.++..+|..|...|+++.|++.|.++...+..+.. ..+++.+.++.+..|++.....++.++-.+-.. ......+.
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3567889999999999999999999999997655444 888999999999999999999999998776432 11222222
Q ss_pred HHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004339 463 GVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 505 (760)
Q Consensus 463 a~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~ 505 (760)
-.||..+ ..-+.+.|..|-.+|-......
T Consensus 115 lk~~~gL--------------~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYEGL--------------ANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHH--------------HHHHhchHHHHHHHHHccCcCC
Confidence 2333222 2234567788888876665433
No 334
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.37 E-value=4.3 Score=40.48 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=107.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHH
Q 004339 235 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314 (760)
Q Consensus 235 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~ 314 (760)
+.+.....+..+...-++....++.++|....++..++.-.. --..+|...|+++++.... . |...
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~-----~-------yr~s 253 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGET-----I-------YRQS 253 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHH-----H-------HhhH
Confidence 344445556666777777778888888888888887775322 2366777888877765322 0 1111
Q ss_pred HhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 004339 315 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL--YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 392 (760)
Q Consensus 315 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~l 392 (760)
.....--..++...+.+ .++ ++-..|+.|..++|+..+|++.|+...+-.|-. ....++-+|
T Consensus 254 ------------qq~qh~~~~~da~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~---t~lniheNL 317 (556)
T KOG3807|consen 254 ------------QQCQHQSPQHEAQLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL---TMLNIHENL 317 (556)
T ss_pred ------------HHHhhhccchhhhhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH---HHHHHHHHH
Confidence 00000000111111222 222 334467888888899999998888887766621 234455666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH-------------HHhcc---HHHHHHHHHHHHHhCCCCh
Q 004339 393 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH-------------YEAEQ---WQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~-------------~~~g~---~~~A~~~~~~al~~~p~~~ 456 (760)
...+....-|......+-+.-++ ..|..+.+.+.-+.+- .+.|- -..|++.+.+|++.+|.-|
T Consensus 318 iEalLE~QAYADvqavLakYDdi-slPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 318 LEALLELQAYADVQAVLAKYDDI-SLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVP 396 (556)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc-cCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCc
Confidence 66666655554443333332222 2233333322221111 11111 1248899999999999887
Q ss_pred hHHhhH
Q 004339 457 TLRFDA 462 (760)
Q Consensus 457 ~~~~~l 462 (760)
.....+
T Consensus 397 kYLLE~ 402 (556)
T KOG3807|consen 397 KYLLEM 402 (556)
T ss_pred HHHHHH
Confidence 655544
No 335
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.34 E-value=0.15 Score=49.90 Aligned_cols=76 Identities=12% Similarity=0.041 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.-...|.-....|+.++|..+|..++.+.|.++.++..+|.+....+++-+|-.+|-+++.+.|.+..++.+.+..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 4445566667889999999999999999999999999999999999999999999999999999999888766543
No 336
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.19 E-value=0.52 Score=55.52 Aligned_cols=179 Identities=19% Similarity=0.146 Sum_probs=128.4
Q ss_pred CchhhhhHHHHHHHcCCHHHHHH------HHHHH-HHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALT------NFEKV-LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-------- 77 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 77 (760)
...-.+..|+..+..|.+.+|.. ++... -.+.|..+..+..++.++...|+++.|+..-.++.-+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 34456778888888899988887 56533 3457888999999999999999999999998887644
Q ss_pred CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchh
Q 004339 78 DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAG---EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 153 (760)
Q Consensus 78 ~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 153 (760)
.|+....+.+++.... ..+...|+..+.++..+..-.. .+....+..+++.++...+.++.|+.+++.|+......
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 2555667777776655 5688889988888877653321 22235666889999999999999999999998632100
Q ss_pred hhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004339 154 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 226 (760)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 226 (760)
.....-.....+..+++++...+++..|+........+
T Consensus 1091 -----------------------------------~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1091 -----------------------------------LGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred -----------------------------------cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 00011224456667788888888888777766655543
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.08 E-value=1.2 Score=39.31 Aligned_cols=111 Identities=14% Similarity=0.032 Sum_probs=86.4
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
-+..+.......+..+++..+..++..+--+.|+.+..-..-|.++...|++.+|+.+|+.+..-.+..+.+.-.++.|+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 34456666677778999999999999998999999999999999999999999999999999988888787777788877
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 147 (760)
. .|+ ..|...+......+...+|+...+...
T Consensus 89 ~al~D------------------------p~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 89 NAKGD------------------------AEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HhcCC------------------------hHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 6 543 234444555555566666666655554
No 338
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.04 E-value=2.1 Score=35.88 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=40.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPD------------NCETLKALGHIYVQLGQIEKAQELLRKAAK 76 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 76 (760)
-|...+..|-|.+|...+.+++..... +.-++-.|+.++..+|+|++++.....++.
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345567788999999999999876422 245677788888888888888777766653
No 339
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.92 E-value=0.69 Score=54.58 Aligned_cols=174 Identities=13% Similarity=0.063 Sum_probs=127.1
Q ss_pred hcHHHHHH------HHH-HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHHH
Q 004339 327 THLEKAKE------LYT-RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 327 ~~~~~A~~------~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~~ 396 (760)
+.+..|.. ++. ....++|.....+..++.++...|++++|+.+-.++.-+.. +...+.....+.+++...
T Consensus 946 ~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~ 1025 (1236)
T KOG1839|consen 946 DGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYE 1025 (1236)
T ss_pred cchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHH
Confidence 45554444 665 33446888899999999999999999999998888765543 333446678899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhh-----c-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh-HHhhHHHHHHHH
Q 004339 397 FAQGNFALAMKMYQNCLRKF-----Y-YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT-LRFDAGVAMQKF 469 (760)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~-----~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~ 469 (760)
+..++...|+..+.+++.+. + .|+-..+..+++.++...+.++.|+.+++.|+...-.-.. -....+.++..+
T Consensus 1026 f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~ 1105 (1236)
T KOG1839|consen 1026 FAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHAL 1105 (1236)
T ss_pred HhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHH
Confidence 99999999999999988763 2 2333666678999999999999999999999985422111 112233333333
Q ss_pred HHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004339 470 SASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 505 (760)
Q Consensus 470 ~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~ 505 (760)
+.....+.++..++.....+..+|.......
T Consensus 1106 -----a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~ 1136 (1236)
T KOG1839|consen 1106 -----ARLFESMKDFRNALEHEKVTYGIYKEQLGPD 1136 (1236)
T ss_pred -----HHHHhhhHHHHHHHHHHhhHHHHHHHhhCCC
Confidence 3556677788999999999888887665433
No 340
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.87 E-value=7.5 Score=42.50 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=30.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004339 21 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 75 (760)
Q Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 75 (760)
-..|+..|.+++|...---.+ -..-|..||.-.+..=+++-|...|.++-
T Consensus 563 m~q~Ieag~f~ea~~iaclgV-----v~~DW~~LA~~ALeAL~f~~ARkAY~rVR 612 (1081)
T KOG1538|consen 563 MYQYIERGLFKEAYQIACLGV-----TDTDWRELAMEALEALDFETARKAYIRVR 612 (1081)
T ss_pred chhhhhccchhhhhcccccce-----ecchHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 345677788777754321111 11236677776666667788887777664
No 341
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.74 E-value=0.13 Score=53.98 Aligned_cols=104 Identities=16% Similarity=0.126 Sum_probs=82.0
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
|.++..++.-|.-.+..+.+..|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...++.++|....+|+.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 344555555666666667788899999999999999888888888888775 56667888888888999988889999
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
|+.++. .+.+.+|+.+...+....|.+
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 998877 678888888888777777743
No 342
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.70 E-value=0.79 Score=37.53 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=40.2
Q ss_pred HHcCChHHHHHHHHHHHHHhcCCCCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc
Q 004339 358 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~p~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 421 (760)
...|+|..|++.+.+.+........+. ...++.++|.++...|++++|+..++.++.......|
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 356777777777777776654221111 2345666777777777777777777777776544444
No 343
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.63 E-value=8.5 Score=38.42 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHHhhh---------------cCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhh
Q 004339 263 KYPNALSMLGDLELKNDDWVKAKETFRAASD---------------ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327 (760)
Q Consensus 263 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 327 (760)
.++..+..+|..|...|++..|..+|-..-. ...+.....+...+.+.|... +
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l------------~ 155 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCL------------G 155 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHT------------T
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh------------c
Confidence 4566777777777777777777766632211 112224455555555545555 8
Q ss_pred cHHHHHHHHHHHHhh
Q 004339 328 HLEKAKELYTRVIVQ 342 (760)
Q Consensus 328 ~~~~A~~~~~~al~~ 342 (760)
+...|...+...++.
T Consensus 156 n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 156 NLRDANELFDTFTSK 170 (260)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888877766655
No 344
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=93.62 E-value=5.5 Score=36.33 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=24.5
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----cC--ChHHHHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-----KG--QFDVSKDLFTQVQEA 376 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g--~~~~A~~~~~~al~~ 376 (760)
+++..|+..|..+-. .+.+.+...+|.++.. .+ +..+|..++.++-.+
T Consensus 87 ~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred cCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 455556666655544 2344555555555442 12 245566666666554
No 345
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.57 E-value=1 Score=39.66 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 276 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 276 (760)
...+..+...-...+++.++..++..+--+.|.....-..-|.++...|++.+|+.+|..+....+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34555556666668888888888888888889888888888889999999999999998888877777888888888888
Q ss_pred hcCCH
Q 004339 277 KNDDW 281 (760)
Q Consensus 277 ~~g~~ 281 (760)
..|+.
T Consensus 90 al~Dp 94 (153)
T TIGR02561 90 AKGDA 94 (153)
T ss_pred hcCCh
Confidence 77764
No 346
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.47 E-value=0.12 Score=48.42 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=56.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 22 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
......++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|.+.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4567789999999999999999999999999999999999999999999999999999764
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.42 E-value=13 Score=39.78 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=29.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 205 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
.-|....++++|+.++..+++.+..+..+.-.+...+..
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 456667889999999999998888777776666555443
No 348
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.32 E-value=9.5 Score=38.05 Aligned_cols=140 Identities=14% Similarity=0.032 Sum_probs=66.7
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR--LAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
.-.++..+..+|..|...|++..|..+|-.. ++...... +...... .-.|.....+..
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~---------------~~~~~e~dlfi~ 145 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWST---------------KGYPSEADLFIA 145 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHH---------------HTSS--HHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHH---------------hcCCcchhHHHH
Confidence 3467899999999999999998888777533 22222111 1111111 223444444444
Q ss_pred HHH-HHhhcCCHHHHHHHHHHhhhc----CCC--------CChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHH
Q 004339 271 LGD-LELKNDDWVKAKETFRAASDA----TDG--------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 337 (760)
Q Consensus 271 la~-~~~~~g~~~~A~~~~~~al~~----~~~--------~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 337 (760)
.+. .|+..++...|...+...+.. .|. .....+++...+ +...+.... ...|..-...|.
T Consensus 146 RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t~e~~~------~~~F~~L~~~Y~ 218 (260)
T PF04190_consen 146 RAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLTCERDN------LPLFKKLCEKYK 218 (260)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHHHHHT-------HHHHHHHHHHTH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHHHhcCc------HHHHHHHHHHhC
Confidence 433 366678888887766555443 221 012223333333 222211111 033444445555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHH
Q 004339 338 RVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 338 ~al~~~p~~~~~~~~la~~~~~ 359 (760)
..|..+|.....+..+|.+|+.
T Consensus 219 ~~L~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 219 PSLKRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp H---HHHHTHHHHHHHHHHHH-
T ss_pred ccccccHHHHHHHHHHHHHHCC
Confidence 5555666666666667776664
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.16 E-value=2.7 Score=45.42 Aligned_cols=126 Identities=16% Similarity=0.103 Sum_probs=62.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDY-VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 284 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 284 (760)
.....++++.+..+.... .+-|.- ..-...++..+...|.++.|+.+. .++...+.|+ +..|+.+.|
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHH
Confidence 334567777776666411 111211 333556666777777777776553 2344444443 566777776
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH
Q 004339 285 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 364 (760)
Q Consensus 285 ~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 364 (760)
....... .++..|..||.. .+.. |+++-|..+|.++- -+..|..+|.-.|+.+
T Consensus 338 ~~~a~~~------~~~~~W~~Lg~~-AL~~------------g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 338 LEIAKEL------DDPEKWKQLGDE-ALRQ------------GNIELAEECYQKAK--------DFSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHCCCC------STHHHHHHHHHH-HHHT------------TBHHHHHHHHHHCT---------HHHHHHHHHHCT-HH
T ss_pred HHHHHhc------CcHHHHHHHHHH-HHHc------------CCHHHHHHHHHhhc--------CccccHHHHHHhCCHH
Confidence 6654321 145566777777 6666 77777777776632 1234555555666654
Q ss_pred HHHHHH
Q 004339 365 VSKDLF 370 (760)
Q Consensus 365 ~A~~~~ 370 (760)
.-..+.
T Consensus 391 ~L~kl~ 396 (443)
T PF04053_consen 391 KLSKLA 396 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 350
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.80 E-value=0.23 Score=48.68 Aligned_cols=85 Identities=14% Similarity=0.055 Sum_probs=73.4
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHcCCChHHH
Q 004339 190 VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR-LAAIAKARNNLQLSIELVNEALKVNGKYPNAL 268 (760)
Q Consensus 190 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 268 (760)
....|+++..|...+......|.|..--..|..++..+|.+++.|.. -+.-+...+++..+...|.+++..+|.+|.+|
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 34667888999999988889999999999999999999999999987 55567788999999999999999999999988
Q ss_pred HHHHHH
Q 004339 269 SMLGDL 274 (760)
Q Consensus 269 ~~la~~ 274 (760)
+..-.+
T Consensus 180 ~eyfr~ 185 (435)
T COG5191 180 IEYFRM 185 (435)
T ss_pred HHHHHH
Confidence 765443
No 351
>PRK12798 chemotaxis protein; Reviewed
Probab=92.61 E-value=15 Score=38.50 Aligned_cols=190 Identities=14% Similarity=0.018 Sum_probs=113.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhC
Q 004339 264 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 343 (760)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 343 (760)
+.+....-|.+-+-.|+-.++...+..+....-+.....++.|.....+.. .+...|+.+|..+--..
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~Al~~lD~aRLla 178 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATALKLLDQARLLA 178 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHHHHHHHHHHHhC
Confidence 334444555555666777777777765544332223333333333322223 67778888888877777
Q ss_pred CCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC
Q 004339 344 TSNLY---AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420 (760)
Q Consensus 344 p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 420 (760)
|.... ++-.-..+....|+.+++..+-.+.+....++.+..+ .+..++..+...++-. -...+...+..+..+.
T Consensus 179 PGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~--F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~ 255 (421)
T PRK12798 179 PGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQ--FAQRFVDLVVRLDDEI-RDARLVEILSFMDPER 255 (421)
T ss_pred CchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHH--HHHHHHHHHHhccccc-cHHHHHHHHHhcCchh
Confidence 76543 3333333446788888888888888887775544332 2333333333333221 2233666666554444
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 421 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
...+|+.+++.-.-.|+.+-|.-.-.+|+.+... ...-...+.+|...
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aa 303 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYRGA 303 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHH
Confidence 5888999999999999999999999999988733 44444455555443
No 352
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.53 E-value=0.93 Score=38.98 Aligned_cols=79 Identities=19% Similarity=0.146 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-HcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 196 KVTVLFNLARLLEQIHD---TVAASVLYRLILF-KYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~-~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
.....+++|.++....+ ..+.+.+++.+++ .+| ..-.+.+.|+..+++.++|+.++.+++.++...|++..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45678888888887654 5578889999996 455 345678889999999999999999999999999998887655
Q ss_pred HHHH
Q 004339 271 LGDL 274 (760)
Q Consensus 271 la~~ 274 (760)
.-.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 4443
No 353
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=92.48 E-value=8.3 Score=35.20 Aligned_cols=112 Identities=10% Similarity=0.156 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-----HcCChHHHHHHHHHH
Q 004339 299 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA-----EKGQFDVSKDLFTQV 373 (760)
Q Consensus 299 ~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~a 373 (760)
.+.+...||.. +..++ .+|+.|..+|..--.-+ ..+...+.+|..++ ..+++..|+..|..+
T Consensus 33 ~Pe~C~lLgdY--lEgi~----------knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~a 99 (248)
T KOG4014|consen 33 RPESCQLLGDY--LEGIQ----------KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIA 99 (248)
T ss_pred CchHHHHHHHH--HHHHH----------HHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHH
Confidence 66777777775 22211 78999999888754433 24455566666554 345889999999998
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 004339 374 QEAASGSVFVQMPDVWINLAHVYFAQG-------NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434 (760)
Q Consensus 374 l~~~p~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 434 (760)
-.. +.+.+..++|.+++.-. +...|..++.++-.+ .+..+.++|...|..
T Consensus 100 C~~-------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----~~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 100 CDA-------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----EDGEACFLLSTMYMG 156 (248)
T ss_pred hcc-------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----CCchHHHHHHHHHhc
Confidence 875 45888888888876533 478899999998875 556666666655543
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.41 E-value=1.2 Score=34.37 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 389 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
...-|.-++...+..+|+..+.+++...+++.+ ..++-+|..+|...|+|.+++.+--.-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667888899999999999998666555 667778888999999999988876554443
No 355
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.09 E-value=14 Score=36.99 Aligned_cols=122 Identities=14% Similarity=0.057 Sum_probs=78.6
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH-HH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE-LL 92 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~ 92 (760)
...-+.+-+...+..+...-+.....++.++|..+.++..|+.--. --..+|..+|+++++...... .... +.
T Consensus 184 ~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~y----r~sqq~q 257 (556)
T KOG3807|consen 184 LRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIY----RQSQQCQ 257 (556)
T ss_pred cChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHH----hhHHHHh
Confidence 3344566677777888888888888999999999988888876433 346788888888886532211 1111 11
Q ss_pred ccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 93 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 93 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
..|...+|.. +.+.+ ....+-..|+.|..++|+..+|++.|+.+.+..|
T Consensus 258 h~~~~~da~~------rRDtn----vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 258 HQSPQHEAQL------RRDTN----VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhccchhhhh------hcccc----hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1222222211 11111 1244557789999999999999999999887554
No 356
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.03 E-value=5.4 Score=41.43 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
.++.-|.+.|..|+-++|.++|+.+..
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344556677777777777777766654
No 357
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.98 E-value=0.36 Score=32.18 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAA 377 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 377 (760)
+++++|.+|...|++.+|+.++.+++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 44555555555555555555555555443
No 358
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=91.97 E-value=24 Score=39.44 Aligned_cols=21 Identities=29% Similarity=0.736 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 390 INLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
+.+-.+++.-|.|.+ |.+.++
T Consensus 750 FGlTKVFFr~GKFaE----FDqiMk 770 (1259)
T KOG0163|consen 750 FGLTKVFFRPGKFAE----FDQIMK 770 (1259)
T ss_pred ccceeEeecCcchHH----HHHHHh
Confidence 444556666666654 555555
No 359
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.96 E-value=0.34 Score=32.35 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
.++.+||.+|...|++.+|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35566677777777777777777666654
No 360
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.53 E-value=7.8 Score=36.33 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
+++...+.||..|. ..+..+|+.+|.+++++.+.... -+++++..|+.+|..+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~-~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN-FNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHhcchhhhh
Confidence 45666666666665 55677777777777777653311 35788888888888888887775
No 361
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.47 E-value=1.3 Score=36.33 Aligned_cols=61 Identities=26% Similarity=0.263 Sum_probs=45.5
Q ss_pred HHHHccCCHhHHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004339 89 GELLISSDTGAALDAFKTARTLLKKAGEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGD 149 (760)
Q Consensus 89 a~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 149 (760)
...+..++|..|++.+.+.+.......... ...++.++|.++...|++++|+..++.++.+
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334446778888777777776655543222 2456788999999999999999999999975
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.28 E-value=8.3 Score=41.75 Aligned_cols=76 Identities=26% Similarity=0.288 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
...++..+...|.++.|+.+. .++...+.|| .+.|+++.|...... .+++..|..||...+..|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcC
Confidence 334445555555555554432 2233333332 355555555444321 224445555555555555
Q ss_pred CHHHHHHHHHHh
Q 004339 280 DWVKAKETFRAA 291 (760)
Q Consensus 280 ~~~~A~~~~~~a 291 (760)
+++-|..+|.++
T Consensus 362 ~~~lAe~c~~k~ 373 (443)
T PF04053_consen 362 NIELAEECYQKA 373 (443)
T ss_dssp BHHHHHHHHHHC
T ss_pred CHHHHHHHHHhh
Confidence 555555555544
No 363
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.25 E-value=32 Score=39.38 Aligned_cols=116 Identities=9% Similarity=0.005 Sum_probs=78.0
Q ss_pred hcHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 327 THLEKAKELYTRVIVQHTSNL----YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
.+.+.|...+.+.....+-+. .++..+|.-....+....|..++..+.... .+...+-....+.+..+++
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~------~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS------QSTSLLERRVRMALGTGDR 328 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc------CCcHHHHHHHHHHHHccCH
Confidence 677888888887655443332 234444544444433677888877665332 2334444445566688999
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 403 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 403 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
..+...+...-.. ........|++|+++...|+..+|..+|.++..
T Consensus 329 ~~~~~~i~~L~~~--~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 329 RGLNTWLARLPME--AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHhcCHh--hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8887777764332 234588999999999999999999999999854
No 364
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=28 Score=38.41 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
.++.+-|.-+++..+|..++++|...+...|.+ ......++.||..+.+.+.|.+++..+-+.+|.++-.....
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345666777888899999999999999877643 44567788999999999999999999999999999888888
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcC
Q 004339 272 GDLELKNDDWVKAKETFRAASDAT 295 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~ 295 (760)
..+....+.-.+|+.+........
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 888888899999999888776654
No 365
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=12 Score=40.66 Aligned_cols=127 Identities=15% Similarity=-0.014 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCChHHHHH--HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhh
Q 004339 250 SIELVNEALKVNGKYPNALSM--LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327 (760)
Q Consensus 250 A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 327 (760)
++..+...+.++|.++.++.. +...+...+....+...+...+...|. ...+..+|+.. .... |
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~L~~a-le~~------------~ 115 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPE-NCPAVQNLAAA-LELD------------G 115 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcc-cchHHHHHHHH-HHHh------------h
Confidence 344444444455555554322 344455555555555555556655555 44555555554 2222 3
Q ss_pred cHHHHH-HHHHHHHhhCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 004339 328 HLEKAK-ELYTRVIVQHTSNLYAANGA------GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 328 ~~~~A~-~~~~~al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~ 395 (760)
....+. .....+....|.+..+...+ +..+..+|+..++.....++..+.| .++.+...+...
T Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p-----~~~~~~~~~~~~ 185 (620)
T COG3914 116 LQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLP-----KYPRVLGALMTA 185 (620)
T ss_pred hHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh-----hhhhhHhHHHHH
Confidence 333333 33333555566655544443 6666677777777777777777777 555554444444
No 366
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=6.2 Score=42.85 Aligned_cols=131 Identities=16% Similarity=-0.045 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANG--AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 405 (760)
....++..+...+.++|.++..+.. +...+...+....+.-.+..++..+| .++.+..+||......|..-.+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNP-----ENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCc-----ccchHHHHHHHHHHHhhhHHHH
Confidence 3334566666666778888776433 46677788999899999999999998 8899999999998888877777
Q ss_pred HHHHHH-HHhhhcCCCcHHHHHHH------HHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 406 MKMYQN-CLRKFYYNTDAQILLYL------ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 406 ~~~~~~-al~~~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+..+.. +.. ..+.+..+...+ ++....+|+..++...+.+++.+.|.++.+...+...
T Consensus 121 ~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 121 LADISEIAEW--LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHh--cCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 666665 555 356665555555 8888888999999999999999999997766665554
No 367
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.55 E-value=2.5 Score=39.56 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004339 63 QIEKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 140 (760)
Q Consensus 63 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 140 (760)
.-..|...|-++-... -+.+...+.||..|...+..+|+..+-+++.+.+.. ....++++..|+.+|..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~-~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPD-DNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3466777776554321 247888999999999889999999999999998765 2456899999999999999999885
No 368
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.35 E-value=0.98 Score=47.79 Aligned_cols=90 Identities=12% Similarity=0.073 Sum_probs=70.5
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc
Q 004339 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 436 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 436 (760)
.+....|+..|.+++...| .....+.+.|.++++.+ +.-.|+.....++.+ +|....+++.|++++..++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~-----~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--n~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVP-----DAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--NPSIQKAHFRLARALNELT 459 (758)
T ss_pred hHHHHHHHHHHHHHhhhcc-----chhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--ChHHHHHHHHHHHHHHHHh
Confidence 3456778888999998888 77888888888888876 344555555566663 5666889999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCh
Q 004339 437 QWQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 437 ~~~~A~~~~~~al~~~p~~~ 456 (760)
++.+|+.+...+....|.+.
T Consensus 460 r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred hHHHhhhhHHHHhhcCchhh
Confidence 99999999888888888653
No 369
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.27 E-value=18 Score=37.70 Aligned_cols=135 Identities=10% Similarity=0.041 Sum_probs=98.0
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC----
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---- 400 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g---- 400 (760)
.-++.-+.+...++..+|+...+|+...+++.+.+ ++..=+.+..++++.+| .+..+|...=.+.....
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~-----RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDP-----RNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCc-----ccccchHHHHHHHHHHhcccc
Confidence 45677788888999999999999999999999776 46788899999999998 55555555444443332
Q ss_pred CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH------hcc------HHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 401 NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE------AEQ------WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 401 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
...+=+.+..+++.. +..+..+|.+...++-. .|+ ...-+..-..|+-.+|+|..+|+..-.++..
T Consensus 164 ~~~~El~ftt~~I~~--nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 164 LEKEELEFTTKLIND--NFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred cchhHHHHHHHHHhc--cchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 256667888888884 66667777777666552 232 2234556677888899999999886555443
No 370
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.11 E-value=18 Score=35.89 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhcc
Q 004339 363 FDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQ 437 (760)
Q Consensus 363 ~~~A~~~~~~al~~~p~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~ 437 (760)
....+.++.+++....... ......+...+|..|+..|+|+.|+.+|+.+...+....- ..++..+..|+..+|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 3345566666665543110 0123456778999999999999999999999877643333 6677788999999999
Q ss_pred HHHHHHHHHHHH
Q 004339 438 WQDCKKSLLRAI 449 (760)
Q Consensus 438 ~~~A~~~~~~al 449 (760)
.+..+.+.-+.+
T Consensus 234 ~~~~l~~~leLl 245 (247)
T PF11817_consen 234 VEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHh
Confidence 988877655443
No 371
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.80 E-value=0.44 Score=44.85 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=50.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH
Q 004339 205 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 266 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 266 (760)
......++.+.|.+.|.+++.+.|.....|+++|....+.|+++.|...|.+.++++|.+..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34456678888888888888888888888888888888888888888888888888886543
No 372
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.50 E-value=1.9 Score=44.37 Aligned_cols=99 Identities=12% Similarity=0.020 Sum_probs=74.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcc-----hHHHHH
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN-----KVTVLF 201 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-----~~~~~~ 201 (760)
|..++++++|..|.--|..++.+|.....+ .+.....+. ...+..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~------------------------------~k~~~~~~~di~~vaSfIet 232 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAAL------------------------------SKPFKASAEDISSVASFIET 232 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhc------------------------------cCCCCCChhhHHHHHHHHHH
Confidence 667889999999999999998865321111 111111111 223456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 202 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 255 (760)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 255 (760)
.|..||..+++.+.|+....+.+-.+|.+...++..|.++..+.+|.+|...+-
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998876543
No 373
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.33 E-value=1.6 Score=42.89 Aligned_cols=62 Identities=29% Similarity=0.336 Sum_probs=34.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 23 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
.+...++++.|..+..+.+..+|.++.-+.-.|.+|.++|.+.-|+..+...+...|+.+.+
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34455555555555555555555555555555555555555555555555555555555444
No 374
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.27 E-value=1.3 Score=28.59 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHH--HHHHHHhCCC
Q 004339 423 QILLYLARTHYEAEQWQDCKKS--LLRAIHLAPS 454 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 454 (760)
+.++.+|-.++.+|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455566666666666666666 3355555543
No 375
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=89.17 E-value=15 Score=35.96 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQ 228 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p 228 (760)
..+|.+....|+|++.+.++.+++..+|
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 3444455555555555555555554443
No 376
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.94 E-value=9.9 Score=39.48 Aligned_cols=62 Identities=6% Similarity=-0.062 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 416 (760)
-..|..||..+++.+.|+....+.+.++| ..+.-++..|.|+..+.+|.+|.+.+--+.-++
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP-----~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNP-----SYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44588999999999999999999999998 778888999999999999999988877766654
No 377
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=88.36 E-value=14 Score=40.48 Aligned_cols=89 Identities=9% Similarity=0.140 Sum_probs=55.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc
Q 004339 342 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 342 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 421 (760)
++-.....+..++..+.....+.-|.++|.++-... .+..++...+++++|..+-++.-+. -
T Consensus 742 ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~k-------------siVqlHve~~~W~eAFalAe~hPe~-----~ 803 (1081)
T KOG1538|consen 742 LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLK-------------SLVQLHVETQRWDEAFALAEKHPEF-----K 803 (1081)
T ss_pred cchhhhhHHHHHHHHHhhccccchHHHHHHHhccHH-------------HHhhheeecccchHhHhhhhhCccc-----c
Confidence 344455566666666667777777777776654332 3345566777888887765543221 1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
+.+|+-.|+.+....++.+|.+.|.+|
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 556677777777777777776666554
No 378
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.45 E-value=0.88 Score=26.83 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=9.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 004339 389 WINLAHVYFAQGNFALAMKMY 409 (760)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~ 409 (760)
.+.+|.++..+|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344444444444444444433
No 379
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.06 E-value=2.2 Score=42.45 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHH
Q 004339 30 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTAR 108 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al 108 (760)
|..=+....++++. ....++..++..+...|+++.++..++..+..+|.+-..|..+-..|. .|+...|+..|.++-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 55555556665543 346788889999999999999999999999999999988888888877 789999999999888
Q ss_pred HHHH
Q 004339 109 TLLK 112 (760)
Q Consensus 109 ~~~~ 112 (760)
+...
T Consensus 215 ~~~~ 218 (280)
T COG3629 215 KTLA 218 (280)
T ss_pred HHhh
Confidence 7543
No 380
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.82 E-value=2 Score=27.74 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=8.8
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 004339 51 LKALGHIYVQLGQIEKAQEL 70 (760)
Q Consensus 51 ~~~la~~~~~~g~~~~A~~~ 70 (760)
++.+|..+..+|++++|+.+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44444444444444444444
No 381
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.78 E-value=49 Score=35.60 Aligned_cols=228 Identities=12% Similarity=0.016 Sum_probs=129.4
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 194 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
|-+...+..+-.++.....+.-...++.+++... .+-.+++.++.+|... ..++-..+.++.++.+-++...-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3444555566666666666667777888888754 5667889999999888 5566778888888888888888888888
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC-CHH-HHH
Q 004339 274 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLY-AAN 351 (760)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~-~~~ 351 (760)
.|.. ++-..+..+|.+++...-+....+ .+-.+ +..... ..-.+.+.-+....++-..... ... ++.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~--~i~ev-WeKL~~-------~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~q 209 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNA--AIKEV-WEKLPE-------LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQ 209 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhh--hHHHH-HHHHHH-------hccccHHHHHHHHHHHHHhhccchHHHHHH
Confidence 8776 788899999998886432101000 00111 111100 0002333333333332221111 111 111
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 004339 352 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 431 (760)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 431 (760)
.+-.-|....++.+|+.++..+++.+. .+..+.-++...+ ...+....+.+-|.....+
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d~-----k~~~ar~~~i~~l----------------Rd~y~~~~~~e~yl~~s~i 268 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHDE-----KDVWARKEIIENL----------------RDKYRGHSQLEEYLKISNI 268 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhcc-----hhhhHHHHHHHHH----------------HHHhccchhHHHHHHhcch
Confidence 122233455677777777777776654 3333332222211 1222233334445555555
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCC
Q 004339 432 HYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 432 ~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
-..-.++..|+.-|++.+.++..+
T Consensus 269 ~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 269 SQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hhccccHHHHHHHHHHHheeccCc
Confidence 555567888999999999888776
No 382
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.76 E-value=65 Score=36.96 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGD 149 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 149 (760)
..++...|..++..|++++|...|-+.+..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 577788899999999999999999998863
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.61 E-value=4.1 Score=31.56 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=37.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHH
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG---HIYVQLGQIEKAQELLRKAA 75 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~al 75 (760)
....|.-++...+..+|+..+.+++...++.+..+..+| .+|...|+|.+++.+.-.-+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777777666655444443 45556677766666554433
No 384
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.53 E-value=40 Score=34.23 Aligned_cols=188 Identities=14% Similarity=0.094 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHh
Q 004339 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 326 (760)
Q Consensus 247 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~ 326 (760)
..+|+.+-.-+..+.|..|+++..++.+++...+... .......+..+...-.- ....
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G~~vlL~dQDr~-lW~r------------ 269 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADGEPVLLEDQDRS-LWDR------------ 269 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCCCeeeccccchh-hhhH------------
Confidence 4677777777788889889888888777654322110 11111011000000000 1111
Q ss_pred hcHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHH-----cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC
Q 004339 327 THLEKAKELYTRVIVQHTSNL-YAANGAGVVLAE-----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 400 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g 400 (760)
+-++++...+.+++....--+ ...-.++-++.. .-+|..-..+|.-...+.| +|.+-+|.+......-
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap------SPvV~LNRAVAla~~~ 343 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP------SPVVTLNRAVALAMRE 343 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC------CCeEeehHHHHHHHhh
Confidence 566777778888776643222 233334444442 3367777778887777776 4777788888887777
Q ss_pred CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhH
Q 004339 401 NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 462 (760)
Q Consensus 401 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 462 (760)
-...++.+.+.....-.-......+...|..+.++|+..+|...|.+++.+.++...-.+-.
T Consensus 344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 78888888887766411122345566788999999999999999999999998876655443
No 385
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.14 E-value=0.96 Score=26.67 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFE 38 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~ 38 (760)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
No 386
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.06 E-value=1.6 Score=28.61 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 388 VWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
++..||.+-+..++|++|+..|.+++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666666666666654
No 387
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.65 E-value=5.4 Score=39.25 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=42.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHH
Q 004339 237 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 302 (760)
Q Consensus 237 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (760)
+=..+...++++.|..+..+.+.++|.++.-+.-.|.+|.+.|.+.-|+..+...+...|. ++.+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~-~~~a 251 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD-DPIA 251 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC-chHH
Confidence 3344556666666776666777766776666666666777777777777666666666665 4443
No 388
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.50 E-value=4.7 Score=40.15 Aligned_cols=63 Identities=19% Similarity=0.064 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
..++..++..+...|+++.++..+++.+..+|.+-.+|..+...|...|+...|+..|.++-.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345555555555666666666666666666666666666666666666666666655555443
No 389
>PF13041 PPR_2: PPR repeat family
Probab=85.25 E-value=3.8 Score=28.64 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 004339 386 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 431 (760)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 431 (760)
...|..+-..|.+.|++++|.++|+..... .-.++...+..+-..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Confidence 455666666677777777777777776664 344455555444433
No 390
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=84.79 E-value=1.7 Score=28.45 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
.++..||.+-...++|.+|+.-|.+++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999863
No 391
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.88 E-value=86 Score=35.85 Aligned_cols=87 Identities=13% Similarity=-0.069 Sum_probs=35.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH------HHHHHHHHHh
Q 004339 203 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLEL 276 (760)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~ 276 (760)
+..++.-.|+|+.|+.++-. .+.+..--..+|.++...|-+.-.-..-...+...+.++. ....+.. .+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~-~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR-SF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHH-TT
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHH-HH
Confidence 34567778999999999877 2222222233444444444333332222555555554432 2222222 34
Q ss_pred hcCCHHHHHHHHHHhhhc
Q 004339 277 KNDDWVKAKETFRAASDA 294 (760)
Q Consensus 277 ~~g~~~~A~~~~~~al~~ 294 (760)
...+...|+.+|--+-..
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 566888999888765544
No 392
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.55 E-value=26 Score=34.69 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------DYVDAYLRLAAIAKARNNLQLSIELVNEA 257 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 257 (760)
..+...+|..|+..|+++.|+.+|+.+..... -...+...+..|+...|+.+..+.+.-++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556788888888888888888888764432 12344556666777777777666554443
No 393
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.27 E-value=48 Score=35.78 Aligned_cols=114 Identities=16% Similarity=0.036 Sum_probs=66.3
Q ss_pred hcHHHHHHHHHHHH----hhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hcCCCCCCchHHHHHHHHHHHHcC
Q 004339 327 THLEKAKELYTRVI----VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA--ASGSVFVQMPDVWINLAHVYFAQG 400 (760)
Q Consensus 327 ~~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~la~~~~~~g 400 (760)
..++.|...|.++- ...+....+....+.++...|.+.+|...+-++... .........+.++-.+|.||
T Consensus 276 ~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~---- 351 (414)
T PF12739_consen 276 PYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY---- 351 (414)
T ss_pred HHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh----
Confidence 34566666676631 122233446666777777888888888777666655 21100000344555556666
Q ss_pred CHHHHHHHHHHHHhh-hcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 401 NFALAMKMYQNCLRK-FYYNT------DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 401 ~~~~A~~~~~~al~~-~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
..+.. .+.+. .+..+..-|.-|.+.|+...|..+|..|+.+...
T Consensus 352 ----------~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 352 ----------ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred ----------cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 00111 01011 1334445678899999999999999999988653
No 394
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.18 E-value=45 Score=36.01 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=23.7
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY 44 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 44 (760)
.-.+|..++..|+|+-|...|+.+.+-.
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3459999999999999999999987644
No 395
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.70 E-value=1.3 Score=49.84 Aligned_cols=10 Identities=20% Similarity=0.574 Sum_probs=4.8
Q ss_pred HHHHHHHHHh
Q 004339 493 NAVRVFSHLS 502 (760)
Q Consensus 493 ~A~~~~~~l~ 502 (760)
+|+..|.++.
T Consensus 1258 ~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1258 EAIHRFDQFT 1267 (1516)
T ss_pred HHHhhhhhhe
Confidence 4445555444
No 396
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=82.65 E-value=31 Score=38.89 Aligned_cols=13 Identities=8% Similarity=0.005 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 004339 528 LDAAKIHREAAER 540 (760)
Q Consensus 528 l~~~~~~~~~~~~ 540 (760)
++..+..|.+.++
T Consensus 216 v~~~qe~La~~qe 228 (1064)
T KOG1144|consen 216 VRAMQEALAKRQE 228 (1064)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555544443
No 397
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.34 E-value=1e+02 Score=35.47 Aligned_cols=210 Identities=9% Similarity=-0.010 Sum_probs=124.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 204 ARLLEQIHDTVAASVLYRLILFKYQDYV----DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
+..-....+.+.|...+.......+-.. .++..+|.-....+...+|..++..+.... .+...+-....+.+..+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHcc
Confidence 3334456677889988887655544332 233444444444433567777777655332 23333444444556888
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
+|..+...+..+...... .....+-+|.. +... |+.+.|..+|.++.. +.+.+ ..|+.- +
T Consensus 327 dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa-~~~~------------g~~~~A~~~~~~~a~--~~~fY--G~LAa~--~ 386 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKE-KDEWRYWQADL-LLEQ------------GRKAEAEEILRQLMQ--QRGFY--PMVAAQ--R 386 (644)
T ss_pred CHHHHHHHHHhcCHhhcc-CHhhHHHHHHH-HHHc------------CCHHHHHHHHHHHhc--CCCcH--HHHHHH--H
Confidence 998888888775443222 45556666666 5556 999999999999744 33322 222221 2
Q ss_pred cCCh-H--HH-HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHh
Q 004339 360 KGQF-D--VS-KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 435 (760)
Q Consensus 360 ~g~~-~--~A-~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 435 (760)
+|.. . .. ...-...+. .. .....+..++..|....|...+..++.. .+..-...++.+....
T Consensus 387 Lg~~~~~~~~~~~~~~~~~~--------~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~----~~~~~~~~la~~A~~~ 452 (644)
T PRK11619 387 LGEEYPLKIDKAPKPDSALT--------QG--PEMARVRELMYWNMDNTARSEWANLVAS----RSKTEQAQLARYAFNQ 452 (644)
T ss_pred cCCCCCCCCCCCCchhhhhc--------cC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHC
Confidence 2321 0 00 000000000 11 2356788889999999999999888874 3455667788888899
Q ss_pred ccHHHHHHHHHHH
Q 004339 436 EQWQDCKKSLLRA 448 (760)
Q Consensus 436 g~~~~A~~~~~~a 448 (760)
|.+..|+....++
T Consensus 453 g~~~~ai~~~~~~ 465 (644)
T PRK11619 453 QWWDLSVQATIAG 465 (644)
T ss_pred CCHHHHHHHHhhc
Confidence 9999888776544
No 398
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.11 E-value=70 Score=33.55 Aligned_cols=135 Identities=12% Similarity=0.110 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH------------cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAE------------KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~ 395 (760)
....++.+-.+.+..+|....+|+..-.++.. ..-++.-+.+...++..+| ....+|..+.++
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~np-----ksY~aW~hR~w~ 118 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNP-----KSYGAWHHRKWV 118 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCc-----hhHHHHHHHHHH
Confidence 33567777777888899888887765444432 2245666778888999998 889999999999
Q ss_pred HHHcC--CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 396 YFAQG--NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE----QWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 396 ~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
+.+.+ ++..=+.++.++++. ++.+...|.+.=.++.... ...+=+.+..+++.-++.|..+|.+...++..+
T Consensus 119 L~~~p~~~~~~EL~lcek~L~~--D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 119 LQKNPHSDWNTELQLCEKALKQ--DPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHhCCCchHHHHHHHHHHHHhc--CcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 99887 468889999999995 6777666655544444322 245667888999999999999999999887643
No 399
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.08 E-value=59 Score=32.65 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 004339 332 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 398 (760)
Q Consensus 332 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~ 398 (760)
|..+|.+|+.+.|.+...++.+|.++...|+.-.|+-+|-+++-... ..+.+..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~-----Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRI-----PFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999985543 347788899888887
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=81.95 E-value=17 Score=38.52 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
-++..|.+++.-+|+|..|++.+..+- ++. ..-.....+-...++
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~id-l~~----------------------------------~~l~~~V~~~~is~~ 167 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENID-LNK----------------------------------KGLYTKVPACHISTY 167 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccC-ccc----------------------------------chhhccCcchheehH
Confidence 345667788999999999999986541 110 000112455677889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILF 225 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~ 225 (760)
|.+|-+|..+++|.+|+..|..++-
T Consensus 168 YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 168 YYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988773
No 401
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=81.33 E-value=38 Score=29.90 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=24.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc
Q 004339 22 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 61 (760)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 61 (760)
..+...+.+...+.+++.++..++.++..+..+..+|...
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3344456666666666666666665666666666666543
No 402
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=80.75 E-value=5.6 Score=40.24 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 33 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 33 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
|..+|.+|+.+.|.+...+..+|.++...|+.-.|+-+|-+++-.....+.+..+|..++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 6678888888888888888888888888888888888888877654445666666655543
No 403
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.85 E-value=5.3 Score=24.45 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004339 28 GDFRSALTNFEKVLEIYPDNCETLKALGH 56 (760)
Q Consensus 28 g~~~~A~~~~~~al~~~p~~~~~~~~la~ 56 (760)
|+++.|..+|++++...|.++..|..++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34555666666666666666655555543
No 404
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.79 E-value=5.5 Score=39.25 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHH
Q 004339 49 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTL 110 (760)
Q Consensus 49 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~ 110 (760)
..+...+..|...|.+.+|+.+.++++.++|-+...+..+-.++. .|+--.|+..|.+.-..
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 345566778888888888888888888888888888888877777 78877777777776544
No 405
>PF12854 PPR_1: PPR repeat
Probab=79.50 E-value=4.2 Score=25.79 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=16.9
Q ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004339 420 TDAQILLYLARTHYEAEQWQDCKKSLLR 447 (760)
Q Consensus 420 ~~~~~~~~la~~~~~~g~~~~A~~~~~~ 447 (760)
+|..+|..|...|.+.|+.++|...|.+
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4455566666666666666666666554
No 406
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.06 E-value=3.1 Score=43.81 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhc----CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAAS----GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 416 (760)
+..+|..+++-+|+|..|++.+..+-- +. ..+.+-...+++.+|.+|+-+++|.+|++.|..++-..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl-~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi 194 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDL-NKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCc-ccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999998765421 11 11122456788999999999999999999999988743
No 407
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=78.65 E-value=78 Score=31.95 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=46.0
Q ss_pred HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC--cH-HHHHHHHHHHccCCHhHHHHHHHHHHHHHHhc
Q 004339 43 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPR--DA-QAFIDLGELLISSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 43 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~--~~-~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~ 114 (760)
..|+..++++.+|...+..|+|..|-.++-....+ +|+ +. ..|-.+|.-....+++.|++-+.+.-......
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~ 200 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSK 200 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence 34666788888999999999998887765544333 332 22 22333443333568888888888776665443
No 408
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=78.61 E-value=70 Score=31.37 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 004339 234 YLRLAAIAKARNNLQLSIELVNEALKVNGK 263 (760)
Q Consensus 234 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 263 (760)
+..+|.+....|+|++.+.++.+++..+|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 567888999999999999999999988765
No 409
>PF12854 PPR_1: PPR repeat
Probab=78.55 E-value=4.2 Score=25.78 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQ 372 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 372 (760)
+...|+.+...|++.|+.++|..+|.+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445555566666666666666665543
No 410
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.11 E-value=2.8e+02 Score=37.98 Aligned_cols=114 Identities=13% Similarity=0.173 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHH---HHHHHHcC-CHHHHHHHHHHHHh-hhcCCCcH
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL---AHVYFAQG-NFALAMKMYQNCLR-KFYYNTDA 422 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~l---a~~~~~~g-~~~~A~~~~~~al~-~~~~~~~~ 422 (760)
++.+..|.+....|-++.++..+.++..+-.. ...++...+ +.||+... .+..+++..+..-- .|.....+
T Consensus 2737 ~~in~fakvArkh~l~~vcl~~L~~iytlp~v----eiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~a 2812 (3550)
T KOG0889|consen 2737 WAINRFAKVARKHGLPDVCLNQLAKIYTLPNV----EIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKA 2812 (3550)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCcc----hHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHH
Confidence 34455566666777777777777666654321 112222222 34444443 34444444433211 12222337
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+.+...|..+.++|+.++|-..|..|++++-.-+.+|..-|.-
T Consensus 2813 eff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y 2855 (3550)
T KOG0889|consen 2813 EFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKY 2855 (3550)
T ss_pred HHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 7788889999999999999999999999887777777777664
No 411
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=77.98 E-value=2.2 Score=47.36 Aligned_cols=11 Identities=9% Similarity=0.168 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 004339 441 CKKSLLRAIHL 451 (760)
Q Consensus 441 A~~~~~~al~~ 451 (760)
|...+++.+..
T Consensus 606 arp~l~~lv~~ 616 (988)
T KOG2038|consen 606 ARPTLRKLVVN 616 (988)
T ss_pred hcchHHHHhhC
Confidence 33333333333
No 412
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.92 E-value=3.2 Score=28.23 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=13.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 390 INLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
+.||.+|+.+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455555555555555555555553
No 413
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.69 E-value=37 Score=35.44 Aligned_cols=99 Identities=21% Similarity=0.269 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHH---HhcCCCCCHH
Q 004339 49 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---DAQAFIDLGELLI-SSDTGAALDAFKTARTLL---KKAGEEVPIE 121 (760)
Q Consensus 49 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~---~~~~~~~~~~ 121 (760)
.++..+|.-|...|+++.|++.|-++-..... ....+.++-.+-. .++|.....+..+|.... .+.....++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 57888999999999999999999996544332 3445555555544 788888877777776652 1111222345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004339 122 VLNNIGVIHFEKGEFESAHQSFKDAL 147 (760)
Q Consensus 122 ~~~~la~~~~~~g~~~~A~~~~~~al 147 (760)
+...-|.+.+.+++|..|..+|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56666777777889999999987664
No 414
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=77.43 E-value=98 Score=32.43 Aligned_cols=126 Identities=12% Similarity=0.041 Sum_probs=73.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHcC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC------CChHHHHHH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQ---------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG------KYPNALSML 271 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l 271 (760)
+....++.+|..+-...+.... -...+|+.+..+|...|+...-...+...+.... ....+...+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 3445888888877766553211 1234567777777777776666655555544321 112345566
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCC---CChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC
Q 004339 272 GDLELKNDDWVKAKETFRAASDATDG---KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 345 (760)
-..|+..+.|+.|-....+..--... ..+..++.+|.+ .... .+|..|..+|-.++...|.
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrI-kaiq------------ldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRI-KAIQ------------LDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhH-HHhh------------cchhHHHHHHHHHHHhCcc
Confidence 66777777788887776665421111 012233445555 4444 6777777777777777775
No 415
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.21 E-value=4.6 Score=27.48 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 425 LLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 425 ~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
-+.||.+|..+|+++.|...++.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36799999999999999999999995
No 416
>PF13041 PPR_2: PPR repeat family
Probab=77.20 E-value=8.6 Score=26.81 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHH
Q 004339 266 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 306 (760)
Q Consensus 266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~l 306 (760)
..|..+-..|.+.|++++|..+|+++....-.++..++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555555666666666666666666655433344444433
No 417
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.48 E-value=1.5e+02 Score=34.18 Aligned_cols=103 Identities=8% Similarity=0.102 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CC---hh-HHhhHHH-
Q 004339 391 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP-SN---YT-LRFDAGV- 464 (760)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~---~~-~~~~la~- 464 (760)
.+-.++....+++.++.+.+..- +.++..|..+-.++...+..+...+...+++..-- .. |. +.--||.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g-----~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn 784 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLG-----KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKN 784 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhC-----ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcC
Confidence 34556677778888777766543 34678888877788888877777777666664311 11 00 1111111
Q ss_pred ------HHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHH
Q 004339 465 ------AMQKFSASTLQKTRRTADEVRSTVAELENAVRVF 498 (760)
Q Consensus 465 ------~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~ 498 (760)
+....-..|+.+....+.+-..+++.+.+.++-.
T Consensus 785 ~~ltls~IkD~ii~~l~~~~~~I~qd~~~Ie~yk~~i~e~ 824 (933)
T KOG2114|consen 785 GTLTLSVIKDYIIKWLNKYSTIIEQDEDAIEVYKKDIEEK 824 (933)
T ss_pred CceEEehhHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHH
Confidence 1223333455555555555566666655555443
No 418
>PTZ00121 MAEBL; Provisional
Probab=76.20 E-value=56 Score=39.80 Aligned_cols=9 Identities=22% Similarity=0.253 Sum_probs=3.8
Q ss_pred CCCCCchhh
Q 004339 9 KPHEFIFPY 17 (760)
Q Consensus 9 ~~p~~~~~~ 17 (760)
.+|.+|.-.
T Consensus 322 CPPR~PLn~ 330 (2084)
T PTZ00121 322 CPPRFPLND 330 (2084)
T ss_pred CCCCCccCC
Confidence 344444433
No 419
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=75.44 E-value=37 Score=35.95 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHccCCHhHHH-HHH
Q 004339 27 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-DPRDAQAFIDLGELLISSDTGAAL-DAF 104 (760)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~A~-~~~ 104 (760)
....-.|+.+++.++..+|.|+.....+..+|..+|-...|...|...--. --.+.-.++.+..+...|.+..+. ..+
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~ 275 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLL 275 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHH
Confidence 345678999999999999999999999999999999999999999654110 011223344444443344444444 555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 105 KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSF 143 (760)
Q Consensus 105 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 143 (760)
..++.....+ ..-.......-+..|.|.+.....
T Consensus 276 ~~~~~fy~~~-----~~~~~e~i~~af~~gsysKi~ef~ 309 (365)
T PF09797_consen 276 ENALKFYDNS-----EKETPEFIIKAFENGSYSKIEEFI 309 (365)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHhCCCchhHHHHH
Confidence 5555554433 111112233344556665555443
No 420
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=75.16 E-value=58 Score=28.67 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=57.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccCCHhHHHHHHHH---------HHHHHHhcCCCCCHHHHHHH
Q 004339 56 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT---------ARTLLKKAGEEVPIEVLNNI 126 (760)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~---------al~~~~~~~~~~~~~~~~~l 126 (760)
..+...+.+...+.+++.++..++.++..+..+..+|..-+....+..+.. ++.+... ...|...
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~~~~~c~~------~~l~~~~ 88 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCEK------AKLYEEA 88 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHHhccccCCHHHHHHHHHH------cCcHHHH
Confidence 344556789999999999999888888888888888875566666666662 2233222 1334555
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 004339 127 GVIHFEKGEFESAHQSFKDA 146 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~a 146 (760)
..+|.+.|.+..|+..+-.-
T Consensus 89 ~~l~~k~~~~~~Al~~~l~~ 108 (140)
T smart00299 89 VELYKKDGNFKDAIVTLIEH 108 (140)
T ss_pred HHHHHhhcCHHHHHHHHHHc
Confidence 66677777777777776543
No 421
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=74.59 E-value=8.1 Score=23.54 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 004339 212 DTVAASVLYRLILFKYQDYVDAYLRLAA 239 (760)
Q Consensus 212 ~~~~A~~~~~~~l~~~p~~~~~~~~la~ 239 (760)
+++.|..+|++++...|..+..|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4455555555555555555555554443
No 422
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.48 E-value=23 Score=39.64 Aligned_cols=121 Identities=11% Similarity=-0.013 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcccchhhhh
Q 004339 82 AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFE---KGEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 82 ~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
++...++-..|. ..+|+.-+.+.+..-.+ |+. .......+.+..+.++.+ -|+-++|+...-.+++.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~------- 272 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK------- 272 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh-------
Confidence 445555555565 45777776666654443 321 100011222223333332 36677777776666552
Q ss_pred cccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHc
Q 004339 157 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ---------IHDTVAASVLYRLILFKY 227 (760)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~~ 227 (760)
..|..+..+...|++|.. .+..+.|+.+|+++++..
T Consensus 273 -----------------------------------eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve 317 (1226)
T KOG4279|consen 273 -----------------------------------EGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE 317 (1226)
T ss_pred -----------------------------------cCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC
Confidence 334455666777777653 356778999999999988
Q ss_pred CCcHHHHHHHHHHHHHcCC
Q 004339 228 QDYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 228 p~~~~~~~~la~~~~~~g~ 246 (760)
|... +-++++.++...|.
T Consensus 318 P~~~-sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 318 PLEY-SGINLATLLRAAGE 335 (1226)
T ss_pred chhh-ccccHHHHHHHhhh
Confidence 8533 23455555555553
No 423
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.10 E-value=16 Score=36.25 Aligned_cols=61 Identities=13% Similarity=0.017 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 004339 233 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 233 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (760)
.+...+..|...|.+.+|+.+.++++.++|-+...+..+..++...|+--.++..|.+.-.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445566777788888888888888888888888888888888888877777766665443
No 424
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=72.33 E-value=1.2e+02 Score=31.00 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc
Q 004339 30 FRSALTNFEKVLEIYPDNCETLKALGHIYVQL 61 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 61 (760)
-++|+.+-.-++.+.|..++++-.++.++++.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~ 243 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQE 243 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46788888888889999999988888877654
No 425
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.45 E-value=52 Score=37.05 Aligned_cols=126 Identities=16% Similarity=0.073 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh------HHHHHHHHHHh---hcCCHHHHHHHHHHhhhcCCCCCh
Q 004339 230 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLEL---KNDDWVKAKETFRAASDATDGKDS 300 (760)
Q Consensus 230 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~ 300 (760)
.+++..++-..|....+|+.-+.+.+.+-. -|+.. .+.+.++.++- .-|+-.+|+...-.+++......+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 455666777777778888777766655433 33211 12222232222 346788888888888877665566
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004339 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 361 (760)
Q Consensus 301 ~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 361 (760)
..+...|.+ |-...-.. .....+..+.|+.+|+++++..|. .++-++++.++...|
T Consensus 279 Dm~Cl~GRI-YKDmF~~S---~ytDa~s~~~a~~WyrkaFeveP~-~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 DMYCLCGRI-YKDMFIAS---NYTDAESLNHAIEWYRKAFEVEPL-EYSGINLATLLRAAG 334 (1226)
T ss_pred ceeeeechh-hhhhhhcc---CCcchhhHHHHHHHHHHHhccCch-hhccccHHHHHHHhh
Confidence 666667777 54431110 011226778899999999999885 344455666666555
No 426
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.62 E-value=1.3e+02 Score=32.01 Aligned_cols=62 Identities=21% Similarity=0.122 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD--AYLRL--AAIAKARNNLQLSIELVNEALKV 260 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 260 (760)
.....+..++..++|..|..+|..+...-|.... .+..+ |..+...-++.+|...++.++..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456777888999999999999999986343333 34444 44457888999999999988765
No 427
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.31 E-value=26 Score=33.26 Aligned_cols=62 Identities=21% Similarity=0.201 Sum_probs=46.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 21 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
...++..+...+|+...+.-++..|.+......+-.+|.-.|++.+|..-++-+-.+.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34566777777888887777777787777777777777777888888877777777777643
No 428
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.25 E-value=71 Score=33.96 Aligned_cols=62 Identities=23% Similarity=0.148 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH--HHHHH--HHHHHhcCCHHHHHHHHHHHHhc
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE--TLKAL--GHIYVQLGQIEKAQELLRKAAKI 77 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 77 (760)
.....+..++..++|..|...|..++..-|.... .+..+ |..+...-++.+|...++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456788889999999999999999986344333 44444 44456678999999999998765
No 429
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=69.59 E-value=55 Score=33.88 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004339 484 VRSTVAELENAVRVFSHLS 502 (760)
Q Consensus 484 ~~~a~~~l~~A~~~~~~l~ 502 (760)
+.....-+..++.+.+.+.
T Consensus 230 ~~~~~~l~~~v~~l~D~~~ 248 (321)
T PF07946_consen 230 MEALEPLLKLVFYLIDKLA 248 (321)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3344445555556666655
No 430
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.20 E-value=2.4e+02 Score=33.33 Aligned_cols=171 Identities=12% Similarity=0.007 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----HcCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHcCCChH------
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILF----KYQDYVDAYLRLAAIAKARNNL--QLSIELVNEALKVNGKYPN------ 266 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~------ 266 (760)
-+..|+.+|...|++++|++++..... .++.....+-.+...+...+.. +-..++..-.+..+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 467899999999999999999999987 3334444555555556566655 5566666666665554321
Q ss_pred -------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHh-hhhcCchHHhhcHHHHHHH--H
Q 004339 267 -------ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR-NEKRAPKLEATHLEKAKEL--Y 336 (760)
Q Consensus 267 -------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~-~~~~~~~~~~~~~~~A~~~--~ 336 (760)
.-.....-|+......-++.+++.++..........+..+... |...+. ..... ++-+++.+. .
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~l-y~e~v~~~~~~~-----~kg~e~~E~~~r 659 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKL-YLEKVLEQASTD-----GKGEEAPETTVR 659 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHH-HHHHHhhccCch-----hccccchhhhHH
Confidence 0011122245667788899999999988776566777777777 766644 21111 111222222 1
Q ss_pred HHHH-------hhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004339 337 TRVI-------VQHTS-------NLYAANGAGVVLAEKGQFDVSKDLFTQVQE 375 (760)
Q Consensus 337 ~~al-------~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 375 (760)
++.. ..+|. ....|...+.++.++|+.++|+.+|-..+.
T Consensus 660 ekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 660 EKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1111 12222 133556667777777787887777766653
No 431
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.12 E-value=3 Score=46.99 Aligned_cols=8 Identities=38% Similarity=0.862 Sum_probs=3.2
Q ss_pred cCCHHHHH
Q 004339 27 LGDFRSAL 34 (760)
Q Consensus 27 ~g~~~~A~ 34 (760)
.|.|.+-+
T Consensus 336 lgey~e~l 343 (1516)
T KOG1832|consen 336 LGEYVEVL 343 (1516)
T ss_pred HHhHHHHH
Confidence 34444333
No 432
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=68.92 E-value=48 Score=31.00 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhhhcCchhh
Q 004339 589 EEHFQRVKEQWRSSTPASK 607 (760)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~ 607 (760)
++++++..+.|-++.....
T Consensus 112 EEKRrqkie~we~~q~Gks 130 (190)
T PF06936_consen 112 EEKRRQKIEMWESMQEGKS 130 (190)
T ss_dssp HHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444555678877765543
No 433
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.14 E-value=2.6e+02 Score=33.17 Aligned_cols=168 Identities=11% Similarity=0.041 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCChHHHHHHHHHHhhcCCH--HHHHHHHHHhhhcCCCCChHHHHH--
Q 004339 234 YLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELKNDDW--VKAKETFRAASDATDGKDSYATLS-- 305 (760)
Q Consensus 234 ~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~-- 305 (760)
+..|+.+|...|.+++|++++.....- ++.....+-.+-..+...+.. .-..++-...+...|.....++..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 677899999999999999999998873 233333333444444444443 555555555555444321111100
Q ss_pred --------HHH-HHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHc--------CChHHHH
Q 004339 306 --------LGN-WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAANGAGVVLAEK--------GQFDVSK 367 (760)
Q Consensus 306 --------lg~-~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~--------g~~~~A~ 367 (760)
-.. +.|+.. ....-++.+++.++..... ....+..++..|... ++-+++.
T Consensus 587 ~~~~~sis~~~Vl~~l~~------------~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~ 654 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKS------------KEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAP 654 (877)
T ss_pred hhhhccCCHHHHHHHhhh------------hCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccch
Confidence 011 113333 6778888899988876554 444555555555521 1222333
Q ss_pred HH--HHHHHHHh-------cCC---CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 368 DL--FTQVQEAA-------SGS---VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 368 ~~--~~~al~~~-------p~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
+. .++....- |+. .+ .....|...+.++.++|+-++|+.+|-..+.
T Consensus 655 E~~~rekl~~~l~~s~~Y~p~~~L~~~-~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 655 ETTVREKLLDFLESSDLYDPQLLLERL-NGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhHHHHHHHHhhhhcccCcchhhhhc-cchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 33 22222221 111 01 1245667778888888888888888877665
No 434
>PLN03237 DNA topoisomerase 2; Provisional
Probab=67.88 E-value=61 Score=40.28 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=5.3
Q ss_pred HHhhhcCCCCCChh
Q 004339 712 RRRRALSESDDDEP 725 (760)
Q Consensus 712 ~~~~~~~~~~~~~~ 725 (760)
++++..|.+.+.+|
T Consensus 1300 ~~~~~~~~~~~~~~ 1313 (1465)
T PLN03237 1300 RKKPLASVSVISDS 1313 (1465)
T ss_pred ccccCCCccccCcc
Confidence 33333343333333
No 435
>PLN02967 kinase
Probab=67.44 E-value=6.1 Score=44.04 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=4.9
Q ss_pred HHHHHhhhhc
Q 004339 593 QRVKEQWRSS 602 (760)
Q Consensus 593 ~~~~~~~~~~ 602 (760)
-+++..|.-.
T Consensus 36 ~~~~~~~~~~ 45 (581)
T PLN02967 36 WRLQNKFLLA 45 (581)
T ss_pred hhhhhHHHhh
Confidence 4455555443
No 436
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=67.42 E-value=1.3e+02 Score=29.56 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=42.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHH-CC--CCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEI-YP--DNCETLKALGHIYVQL-GQIEKAQELLRK 73 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~-~p--~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 73 (760)
+..+|.+.-+.++|++.+.+..+++.. +| -+.+-...+..+|-.. |....+...+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 456888889999999999999999887 44 3556666676666543 666666666655
No 437
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.20 E-value=45 Score=31.74 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=37.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 241 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 241 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
+++.+.+.+|+.....-++..|.+......+-.+|+-.|+|.+|...++-+-.+.|.
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 445566666666666666666766666666666667777777777666666666554
No 438
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=66.86 E-value=14 Score=32.78 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
.+.....+...+..|++.-|..+...++..+|++..+....+.+|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~ 115 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALE 115 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555555555554443
No 439
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=66.84 E-value=7 Score=39.74 Aligned_cols=130 Identities=16% Similarity=0.046 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHH
Q 004339 123 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 202 (760)
Q Consensus 123 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 202 (760)
....+...+..+++..|..-|.+++......+ . ....+... +..........+..+
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s--~-------------------~~~~e~~~---~~~~~~~~r~~~~~n 280 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQS--R-------------------DREKEQEN---RIPPLRELRFSIRRN 280 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccc--c-------------------cccccccc---ccccccccccccccc
Confidence 34456678889999999999998876311000 0 00000000 011123334456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 004339 203 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 276 (760)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 276 (760)
++.+-...+.+..|+.....++...+....+++..+..+....++++|+..+..+....|++..+...+..+-.
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 88888899999999888888888888888999999999999999999999999999999998876665554433
No 440
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.55 E-value=87 Score=27.17 Aligned_cols=86 Identities=8% Similarity=-0.009 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHH
Q 004339 361 GQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ 439 (760)
Q Consensus 361 g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 439 (760)
+.-..-..++.+++...... .+.+++. ++.+=..|... ...+..+|..+....-....+..|...|..+...|++.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~R-ylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~ 116 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDER-YLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFK 116 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HH-HHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHH-HHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHH
Confidence 45666677888888877532 2222222 22222223322 23899999988887545566999999999999999999
Q ss_pred HHHHHHHHHH
Q 004339 440 DCKKSLLRAI 449 (760)
Q Consensus 440 ~A~~~~~~al 449 (760)
+|..+|..++
T Consensus 117 ~A~~I~~~Gi 126 (126)
T PF08311_consen 117 KADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999998875
No 441
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.82 E-value=71 Score=32.35 Aligned_cols=102 Identities=18% Similarity=0.090 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH--
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-- 266 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 266 (760)
.-..++.+.|..|++.|+-+.|.+.+.+.....- +-..+.+++|.+|....-..+.++..+.+++...+ ++
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD-WeRr 180 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD-WERR 180 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC-hhhh
Confidence 3457899999999999999999999988875432 33455677888887776666666666666665433 22
Q ss_pred --HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 267 --ALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 267 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
.-...|...+...++.+|-..|-.++....+
T Consensus 181 NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 181 NRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 3445566777788999999999888876654
No 442
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=65.40 E-value=18 Score=42.86 Aligned_cols=8 Identities=13% Similarity=0.302 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 004339 487 TVAELENA 494 (760)
Q Consensus 487 a~~~l~~A 494 (760)
....|...
T Consensus 210 ~~e~LD~~ 217 (840)
T PF04147_consen 210 LTEKLDED 217 (840)
T ss_pred HHHHHHHh
Confidence 33334433
No 443
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.32 E-value=2.3e+02 Score=31.69 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=75.0
Q ss_pred hcHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC
Q 004339 327 THLEKAKELYTRVIVQHTSNLY------AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 400 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g 400 (760)
.+|..++++|...+...|.+.. ....++.||..+.+.+.|.+++..|-+.+| .++.....+-.+....|
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~-----~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR-----QSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-----ccHHHHHHHHHHHHHhc
Confidence 8999999999999998886543 566789999999999999999999999998 77888888888889999
Q ss_pred CHHHHHHHHHHHHhhh
Q 004339 401 NFALAMKMYQNCLRKF 416 (760)
Q Consensus 401 ~~~~A~~~~~~al~~~ 416 (760)
+-.+|+.........+
T Consensus 443 ~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 443 KSEEALTCLQKIKSSE 458 (872)
T ss_pred chHHHHHHHHHHHhhh
Confidence 9999999998888765
No 444
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.25 E-value=3.1e+02 Score=33.13 Aligned_cols=32 Identities=22% Similarity=0.050 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 79 (760)
+...+.+|.+|...|...+|+.+|.+|..-..
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~g 951 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFG 951 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccc
Confidence 56778899999999999999999999886543
No 445
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=64.80 E-value=1.6e+02 Score=29.56 Aligned_cols=39 Identities=21% Similarity=0.420 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 004339 561 ARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWR 600 (760)
Q Consensus 561 ~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 600 (760)
......+.+.+-..++.+..|++...+.+.. .++.+.|.
T Consensus 184 ~e~l~~qe~~l~~~rr~r~~ElR~l~~kka~-~q~~e~w~ 222 (340)
T KOG3756|consen 184 REQLEKQERELLEERRARQTELRLLEQKKAL-AQLFEEWN 222 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3333444455556666777777766665544 55888894
No 446
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.04 E-value=1.2e+02 Score=30.59 Aligned_cols=101 Identities=9% Similarity=0.082 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC---CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF---VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 425 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 425 (760)
....||.+|...++|..|...+.-+- .+.|... ......+..+|.+|...++..+|..+..++--......+..+.
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~-~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIP-LDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccC-cccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 45678999999999999887764332 1111000 0123467788999999999999998888775543344554443
Q ss_pred H----HHHHHHHHhccHHHHHHHHHHHHH
Q 004339 426 L----YLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 426 ~----~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
. ..|+++-..++|-+|...|-+...
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 556666667888787777665544
No 447
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=63.80 E-value=1.1e+02 Score=33.92 Aligned_cols=7 Identities=14% Similarity=0.116 Sum_probs=3.5
Q ss_pred CChhhhh
Q 004339 722 DDEPFER 728 (760)
Q Consensus 722 ~~~~~~~ 728 (760)
..|||++
T Consensus 520 EVdSDeE 526 (811)
T KOG4364|consen 520 EVDSDEE 526 (811)
T ss_pred cccCccc
Confidence 4455555
No 448
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.75 E-value=2e+02 Score=30.46 Aligned_cols=67 Identities=15% Similarity=0.032 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 386 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFY---YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
+..+..++.++.+.|.+++|.++|.-.+.... ..+...++..+-..-...+....|+.+++-|+..+
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 66778889999999999999999988876421 12223444455555666778888888888775543
No 449
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=62.00 E-value=1.7e+02 Score=28.86 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=10.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 004339 203 LARLLEQIHDTVAASVLYRLILF 225 (760)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~~l~ 225 (760)
+|.+..+.++|++.+.+...++.
T Consensus 7 ~Aklaeq~eRyddm~~~mk~~~~ 29 (244)
T smart00101 7 MAKLAEQAERYEEMVEFMEKVAK 29 (244)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHh
Confidence 44444444444444444444444
No 450
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.91 E-value=2.9e+02 Score=31.60 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=27.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhh
Q 004339 352 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG-----NFALAMKMYQNCLRK 415 (760)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~ 415 (760)
.||.++.-.|. .+|+.+++.+.. +|.+. -...++..+|.+.+++. ++..-.+.|.+.+..
T Consensus 612 ALGIaCAGtG~-~eAi~lLepl~~-D~~~f--VRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 612 ALGIACAGTGL-KEAINLLEPLTS-DPVDF--VRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND 676 (929)
T ss_pred HHhhhhcCCCc-HHHHHHHhhhhc-ChHHH--HHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh
Confidence 34444444443 345555554443 33110 01234455555555443 455555555555554
No 451
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=60.72 E-value=11 Score=40.29 Aligned_cols=10 Identities=20% Similarity=0.617 Sum_probs=4.8
Q ss_pred CCchHHHHhhh
Q 004339 706 PSITAARRRRA 716 (760)
Q Consensus 706 ~~~~~~~~~~~ 716 (760)
|... .+++++
T Consensus 360 p~~~-~k~~~~ 369 (555)
T KOG2393|consen 360 PTDD-EKKKKA 369 (555)
T ss_pred CCcc-hhhccc
Confidence 4444 445555
No 452
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.23 E-value=2.4e+02 Score=29.77 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC------c
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT------D 421 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~ 421 (760)
.++..+|.-|...|+++.|+..|.++........ .....|.++..+-+..|+|..-..+-.++........ .
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k--hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK--HVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH--HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 3677899999999999999999999877663111 3467888999999999999988888888776410001 1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH--------hCCCChhHHhhHH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIH--------LAPSNYTLRFDAG 463 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la 463 (760)
+.+...-|.+.+.+++|..|..+|-.+.. +.|.+..++..|.
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLc 278 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLC 278 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhH
Confidence 44556677777888899999998876643 2455555554443
No 453
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=58.61 E-value=2.5e+02 Score=29.72 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG-NFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+..|.+|..+|+|.+|+..|..++-.-. ..-..+...+.+|-..+ +.+.--.++.-++..+|..-|..++..++
T Consensus 276 Y~VGFayLmmrryadai~~F~niLlyIq-----rtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~ 350 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLYIQ-----RTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLA 350 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHH
Confidence 4566677777777777777766654321 11111122222222222 34444444555555555444455555555
Q ss_pred HH
Q 004339 430 RT 431 (760)
Q Consensus 430 ~~ 431 (760)
.+
T Consensus 351 Ek 352 (525)
T KOG3677|consen 351 EK 352 (525)
T ss_pred HH
Confidence 54
No 454
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.48 E-value=1.5e+02 Score=28.50 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=3.0
Q ss_pred HHHHhhhh
Q 004339 594 RVKEQWRS 601 (760)
Q Consensus 594 ~~~~~~~~ 601 (760)
+..+...+
T Consensus 171 keheEylk 178 (299)
T KOG3054|consen 171 KEHEEYLK 178 (299)
T ss_pred HHHHHHHH
Confidence 33333333
No 455
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.25 E-value=2.1e+02 Score=28.69 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 98 GAALDAFKTARTLL-KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 98 ~~A~~~~~~al~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
++-+.-+...++-. ..++.....+++.++|..|.+.++.+.+.+++.+.+.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34445554444332 3333444578999999999999999999988888775
No 456
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=57.78 E-value=16 Score=21.93 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQE 375 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~ 375 (760)
|+.+-..|.+.|++++|..+|.+..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555566666666666666665543
No 457
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.39 E-value=4.3e+02 Score=32.10 Aligned_cols=142 Identities=15% Similarity=0.050 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc-hhhhhcccchhhhhhhhhHHHHHHhHHhhhhh-hccCCCccCCcch-
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGI-WLTLLDSKTKTYVIDASASMLQFKDMQLFHRF-ENDGNHVELPWNK- 196 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~p~~- 196 (760)
+...+.+|.+|...|...+|+.+|.++..--. +. .+ ..+.+...- ... ...++.. ..+..
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL-------------~~lv~~~~p--~~~sv~dG~t~-s~e~t~ 982 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-AL-------------RKLVYFLLP--KRFSVADGKTP-SEELTA 982 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HH-------------HHHHHHhcC--CCCchhcCCCC-CchHHH
Confidence 56678899999999999999999999986311 00 00 000000000 000 0001100 11111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH---HHH
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 269 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 269 (760)
...|....+++...+-.+.++++-..+++.-|+. +..+..+-..+..+|.+.+|... +-.+|+... .+.
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcLR 1058 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHHH
Confidence 3345556778888899999999999998765432 33444455556677888777643 334565332 455
Q ss_pred HHHHHHhhcCCHH
Q 004339 270 MLGDLELKNDDWV 282 (760)
Q Consensus 270 ~la~~~~~~g~~~ 282 (760)
.+..+++..|.++
T Consensus 1059 qlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1059 QLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHhccchH
Confidence 5666666666643
No 458
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=56.15 E-value=24 Score=27.27 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=14.1
Q ss_pred HcCCHHHHHHHHHHHHhhh
Q 004339 398 AQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~ 416 (760)
..|+|++|+.+|..++..|
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 3477888888888887765
No 459
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=56.09 E-value=18 Score=21.70 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 122 VLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 122 ~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
+|+.+-..|.+.|++++|...|.+..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788888999999999999988765
No 460
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.95 E-value=1.9e+02 Score=29.31 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC--c----HHHHHHHHHHHHHhccHHHHHHHHHHHH--HhCCCChh
Q 004339 386 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT--D----AQILLYLARTHYEAEQWQDCKKSLLRAI--HLAPSNYT 457 (760)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~ 457 (760)
..+...||.+|.+.++|..|...+.-.-.. ..+. + ...+..+|++|...++..+|..+..++- ..+..|+.
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~-tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLD-TGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcc-cchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 456788999999999999998887643221 1111 1 5667789999999999999999887763 34557777
Q ss_pred HHhhHHHHHHHH
Q 004339 458 LRFDAGVAMQKF 469 (760)
Q Consensus 458 ~~~~la~~~~~~ 469 (760)
+...+-.||-..
T Consensus 182 Lqie~kvc~ARv 193 (399)
T KOG1497|consen 182 LQIEYKVCYARV 193 (399)
T ss_pred HHHHHHHHHHHH
Confidence 777776665443
No 461
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=54.97 E-value=2.4e+02 Score=28.52 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004339 558 AEEARRKAEEQKKYLLEKRKLEDEQKRLRQ 587 (760)
Q Consensus 558 ~~e~~~~~~e~~~~~~~~~~~~~e~~~~~~ 587 (760)
++-++.++.+.++.++..++..+...+..+
T Consensus 174 ~e~qrlE~~e~r~~eEkerR~~q~~~~~~~ 203 (291)
T PF06098_consen 174 AEVQRLEEAEKRRREEKERRIKQQKERLEK 203 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443333333333
No 462
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=54.61 E-value=10 Score=40.42 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=15.0
Q ss_pred CccccchhhhhcccCCCCCCcchhhc
Q 004339 640 RSHYETEYAEADMMDYREEPEDEDAS 665 (760)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (760)
.+|-+++|.|-.--+.+|..|++...
T Consensus 682 d~emde~eiw~alv~srp~~e~d~dd 707 (821)
T COG5593 682 DDEMDENEIWSALVKSRPDVEDDSDD 707 (821)
T ss_pred cccccHHHHHHHHhccCCccccCccc
Confidence 33335566676666667666655443
No 463
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.49 E-value=76 Score=34.98 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=44.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
..+.+++|.+.++... .-.+..+.|+++.|.++..++ ++..-|-.||.+.+..+++..|.++|.++
T Consensus 627 ~g~~e~AL~~s~D~d~----rFelal~lgrl~iA~~la~e~----------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 627 QGMKEQALELSTDPDQ----RFELALKLGRLDIAFDLAVEA----------NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred ccchHhhhhcCCChhh----hhhhhhhcCcHHHHHHHHHhh----------cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3344555555543222 123345667777776665443 44667888888888888888888888887
Q ss_pred Hhh
Q 004339 413 LRK 415 (760)
Q Consensus 413 l~~ 415 (760)
...
T Consensus 693 ~d~ 695 (794)
T KOG0276|consen 693 RDL 695 (794)
T ss_pred cch
Confidence 653
No 464
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=54.04 E-value=88 Score=26.76 Aligned_cols=68 Identities=19% Similarity=0.020 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC---Cc----------HHHHHHHHHHHHHhccHHHHHHHHHHH----HHh
Q 004339 389 WINLAHVYFAQGNFALAMKMYQNCLRKFYYN---TD----------AQILLYLARTHYEAEQWQDCKKSLLRA----IHL 451 (760)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a----l~~ 451 (760)
+..+|...++.+++-.++-.|++|+.....- .. +....+||..|..+|+.+-.++|++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 3456666777777777777777776653221 10 334568999999999999999998654 556
Q ss_pred CCCCh
Q 004339 452 APSNY 456 (760)
Q Consensus 452 ~p~~~ 456 (760)
-|.-+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 66543
No 465
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=53.47 E-value=50 Score=37.57 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=69.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 004339 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG--NFALAMKMYQNCLRKFYYNTDAQILLYLART 431 (760)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 431 (760)
+..++..+++..|.--|..++.+.|.+ ++.......+.+.+|+..| +|..++.-..-++.. .|.-..+++..+.+
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~-~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~--~p~i~~~Ll~r~~~ 136 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKD-HHVVATLRSNQASCYMQLGLGEYPKAIPECELALES--QPRISKALLKRARK 136 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheecccc-chhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc--cchHHHHHhhhhhH
Confidence 555666677777766677777777732 2244566667777776654 677777776666663 55556777777788
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 432 HYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 432 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
|...+.++-|++.+.-.....|.++.+.
T Consensus 137 y~al~k~d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 137 YEALNKLDLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 8888887777777777777777774443
No 466
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=53.35 E-value=25 Score=21.52 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQE 375 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~ 375 (760)
|+.+-..|.+.|++++|..+|..+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555666666666666655543
No 467
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.32 E-value=2.5e+02 Score=28.14 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh---
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP--- 265 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--- 265 (760)
....++.++|..|.+.++.+.+.+++.+.+...- +-..+..++|.+|..+.-..+.++....+++...+-.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3567999999999999999999999998876432 2334566778888777777777777777776543321
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHH
Q 004339 266 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 304 (760)
Q Consensus 266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 304 (760)
..-...|...+...++.+|-..+...+....+.....|.
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~ 231 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYS 231 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHH
Confidence 133355666777788999999998888766554433333
No 468
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=53.01 E-value=2.7e+02 Score=28.47 Aligned_cols=154 Identities=22% Similarity=0.207 Sum_probs=89.6
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCcHHHHHHHHHHHc-cCC-H-
Q 004339 25 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA----KIDPRDAQAFIDLGELLI-SSD-T- 97 (760)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~-~~~-~- 97 (760)
+..+++.+.+..+++.+..+|-..+.++..+.++.++|. ..+.......+ ..-|.-. .+.+ .|- |
T Consensus 110 ~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~-------~L~F~DGtPFa 181 (301)
T TIGR03362 110 LAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLL-------ELKFSDGTPFA 181 (301)
T ss_pred HhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChh-------hcccCCCCCCC
Confidence 366788899999999999988888999999999999994 55544444332 2233211 1111 121 0
Q ss_pred -hHHHHHHHHHHHHH------H--hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhh
Q 004339 98 -GAALDAFKTARTLL------K--KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168 (760)
Q Consensus 98 -~~A~~~~~~al~~~------~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 168 (760)
+.....+....... + .............-+..+...+.++.|+..++..+...+
T Consensus 182 d~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~----------------- 244 (301)
T TIGR03362 182 DDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAR----------------- 244 (301)
T ss_pred CHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCC-----------------
Confidence 11122221111000 0 000000112223336667778888888888887543210
Q ss_pred hHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004339 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 226 (760)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 226 (760)
.........+.+++++...|.++-|..+|..+...
T Consensus 245 -----------------------s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 245 -----------------------EPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred -----------------------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12234456677888899999999999888887754
No 469
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.00 E-value=25 Score=34.50 Aligned_cols=11 Identities=36% Similarity=0.335 Sum_probs=4.2
Q ss_pred HHHHhhHHHHH
Q 004339 573 LEKRKLEDEQK 583 (760)
Q Consensus 573 ~~~~~~~~e~~ 583 (760)
++++++++|+.
T Consensus 74 eEL~Rke~ELd 84 (313)
T KOG3088|consen 74 EELRRKEQELD 84 (313)
T ss_pred HHHHHHHHHHh
Confidence 33333334443
No 470
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=52.69 E-value=2.7e+02 Score=28.36 Aligned_cols=183 Identities=13% Similarity=0.101 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CC--ChHH-HHHHHHHHhhcCCHHHHHHHHHHhh
Q 004339 218 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--GK--YPNA-LSMLGDLELKNDDWVKAKETFRAAS 292 (760)
Q Consensus 218 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~--~~~~-~~~la~~~~~~g~~~~A~~~~~~al 292 (760)
.++.+-....|+...+.+.+|...+..|+|..|..++-....+. |+ +..+ |..+| .-.-..+|+.|++-+.+.-
T Consensus 116 ~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlA-SEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 116 QHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLA-SEILTQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHHHhhHHHHHHHHHHHH
Confidence 33344344457788888999999999999998887765544432 22 2222 22232 2334567999988887766
Q ss_pred hcCCCC---C-hHHHHHHHHH---HHHHHHhhhhcCchHHhhcHHHHHHHH------HHHHhhCCCCHHHHHHHHHHHHH
Q 004339 293 DATDGK---D-SYATLSLGNW---NYFAALRNEKRAPKLEATHLEKAKELY------TRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 293 ~~~~~~---~-~~~~~~lg~~---~y~~~~~~~~~~~~~~~~~~~~A~~~~------~~al~~~p~~~~~~~~la~~~~~ 359 (760)
...... . ...+.....+ ..+-...+. +--+.-+.+| -.++ ....|..+..|+.+...
T Consensus 195 e~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhp--------kgrd~iid~fly~p~YLNaI--Qt~cPhllRYLatAvvt 264 (432)
T KOG2758|consen 195 EYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHP--------KGRDTIIDMFLYQPPYLNAI--QTSCPHLLRYLATAVVT 264 (432)
T ss_pred HHHcccccccHHHHHHHHHHHHHHHHHhhccCC--------ChhhHHHHHHccCHHHHHHH--HhhCHHHHHHHHHHhhc
Confidence 543221 1 1111111111 011110001 1111222221 1122 12345566666666554
Q ss_pred c-CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 360 K-GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 360 ~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
. .....++.-+-++++...-+ + .+| ....-.|++-.=+|+.|...++.|-..
T Consensus 265 nk~~rr~~lkdlvkVIqqE~ys-Y-kDP--iteFl~clyvn~DFdgAq~kl~eCeeV 317 (432)
T KOG2758|consen 265 NKRRRRNRLKDLVKVIQQESYS-Y-KDP--ITEFLECLYVNYDFDGAQKKLRECEEV 317 (432)
T ss_pred chHhhHHHHHHHHHHHHHhccc-c-CCc--HHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 4 56677777777777765311 0 122 234445666667888998888887665
No 471
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=52.63 E-value=35 Score=20.85 Aligned_cols=27 Identities=15% Similarity=0.344 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 389 WINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
|..+-..|.+.|++++|..+|......
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 455666667777777777777666553
No 472
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=52.09 E-value=1.1e+02 Score=23.71 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=8.4
Q ss_pred HHHHHHHHhCCCChhH
Q 004339 443 KSLLRAIHLAPSNYTL 458 (760)
Q Consensus 443 ~~~~~al~~~p~~~~~ 458 (760)
+.+.+++...|+++..
T Consensus 34 e~L~q~~~~~pD~~~k 49 (75)
T cd02682 34 EVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHHhCCChHHH
Confidence 3344555556666543
No 473
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=52.00 E-value=60 Score=28.78 Aligned_cols=51 Identities=20% Similarity=0.145 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHH
Q 004339 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 471 (760)
Q Consensus 421 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 471 (760)
........+...+..|++.-|..+...++..+|++..++.-.+.+|..++.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 355566666677778888888888888888888888888888887777764
No 474
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=51.67 E-value=1.7e+02 Score=25.67 Aligned_cols=114 Identities=12% Similarity=0.204 Sum_probs=62.3
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHH------------------HHHHHHH--HcCChHHHHHHHHHHHHHhcCCCCCCch
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAAN------------------GAGVVLA--EKGQFDVSKDLFTQVQEAASGSVFVQMP 386 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~------------------~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~ 386 (760)
|..++..+...+.+...|-...-|+ .+|.++- ..|+...-+.+|-..-. .
T Consensus 16 G~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~----------~ 85 (161)
T PF09205_consen 16 GDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK----------L 85 (161)
T ss_dssp T-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT------------
T ss_pred chHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc----------h
Confidence 8888888888888776553222221 1111111 23344444444433211 1
Q ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 387 DVWINLAH-VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 387 ~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
.-|..+|. ++..+|+-++--+++..... ....+|.+++.+|.+|.+.|+..+|-+.+.+|.+..
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 12333333 44566666666666666554 245669999999999999999999999999998754
No 475
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.96 E-value=83 Score=29.66 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 405 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 405 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
.+...++.+. ..+++.++..++.++...|+.++|.....++..+.|
T Consensus 130 ~~~~a~~~l~---~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLR---RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344444444 457899999999999999999999999999999999
No 476
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.57 E-value=3.4e+02 Score=28.93 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhhhcC
Q 004339 588 QEEHFQRVKEQWRSST 603 (760)
Q Consensus 588 ~~~~~~~~~~~~~~~~ 603 (760)
..++..-|+||.+..+
T Consensus 433 ~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 433 KDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHhHh
Confidence 3445566666665443
No 477
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=49.40 E-value=2.6e+02 Score=27.28 Aligned_cols=6 Identities=33% Similarity=0.523 Sum_probs=2.1
Q ss_pred HHHHHH
Q 004339 580 DEQKRL 585 (760)
Q Consensus 580 ~e~~~~ 585 (760)
+++.++
T Consensus 365 ee~~ra 370 (445)
T KOG2891|consen 365 EELERA 370 (445)
T ss_pred HHHHHH
Confidence 333333
No 478
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=49.18 E-value=13 Score=37.84 Aligned_cols=74 Identities=23% Similarity=0.157 Sum_probs=58.9
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
..+..++.+-+..+.+..|+.....++..++....+++..+..+....++++|+..+..+....|.+......+
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 34555777788888888888888888887788888888888888888888888888888888888877554433
No 479
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=48.94 E-value=2.4e+02 Score=26.71 Aligned_cols=52 Identities=10% Similarity=0.157 Sum_probs=37.6
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhc
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p 378 (760)
|+++.|-.+|--++...+-+.....++|.--. ..+.-....++|+......|
T Consensus 55 ~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 55 GDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred ccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 99999999999999988888887777776544 44444444466666655544
No 480
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=48.91 E-value=5.8e+02 Score=31.14 Aligned_cols=72 Identities=8% Similarity=-0.087 Sum_probs=31.3
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 004339 209 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 288 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 288 (760)
.+++|+.|+..+..+- +.+.+-.. .+-.+.|.|..|+.+|.--.+. ...++...|.-+.....+++|.-.|
T Consensus 892 ~L~ry~~AL~hLs~~~---~~~~~e~~---n~I~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 892 YLKRYEDALSHLSECG---ETYFPECK---NYIKKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHHHcC---ccccHHHH---HHHHhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHH
Confidence 3456666666555442 22211111 1223455555555544322111 1124444555555555555555444
Q ss_pred H
Q 004339 289 R 289 (760)
Q Consensus 289 ~ 289 (760)
.
T Consensus 963 e 963 (1265)
T KOG1920|consen 963 E 963 (1265)
T ss_pred H
Confidence 4
No 481
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=48.83 E-value=1.8e+02 Score=25.23 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC------------CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGS------------VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 416 (760)
.+..+-.++...|+......++.....++... .+| +..++..++.+|...|++..|+++.......+
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~P-t~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYP-TSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 45556667778888888888887776655311 122 35667777777777777777777777777776
Q ss_pred cCCCcHHHHHHH
Q 004339 417 YYNTDAQILLYL 428 (760)
Q Consensus 417 ~~~~~~~~~~~l 428 (760)
+-+-...+|..|
T Consensus 83 ~I~i~~~~W~~L 94 (126)
T PF12921_consen 83 PIPIPKEFWRRL 94 (126)
T ss_pred CCCCCHHHHHHH
Confidence 544444444443
No 482
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=48.62 E-value=4.7e+02 Score=29.98 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLIL 224 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l 224 (760)
.+....|.-....|++..|+.+|.-+-
T Consensus 415 ~i~~~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 415 EIIEQAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 455666777777788877777776553
No 483
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=48.43 E-value=75 Score=27.18 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=38.4
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPD---------------NCETLKALGHIYVQLGQIEKAQELLRKA 74 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 74 (760)
+..+|...++.+++-.++-.|++++...-+ .+....+||..+..+|+.+-.+.+++-|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 567788888888888888888888764211 1234455666666666666666666544
No 484
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.99 E-value=2.1e+02 Score=31.88 Aligned_cols=97 Identities=12% Similarity=0.195 Sum_probs=60.7
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
|+++.|..+..+ .++..-|-.||.+....|++..|.++|.++.... .|-.++...|+-+--.
T Consensus 651 grl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~-------------~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 651 GRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDLG-------------SLLLLYTSSGNAEGLA 712 (794)
T ss_pred CcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcchh-------------hhhhhhhhcCChhHHH
Confidence 777877776555 3567789999999999999999999999886543 2223344445433222
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
.+-..+-.. ...+. -=.+|+..|++++|++.+...
T Consensus 713 ~la~~~~~~--g~~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQ--GKNNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhh--cccch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 221111111 11111 113567889999988887654
No 485
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=47.09 E-value=1.4e+02 Score=29.04 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=56.4
Q ss_pred HHcCChHHHHHHHHHHHHHh---cCCCCCCc----hHHHHHHHHHHHHcCCHH-HH-HHHHHHHHhhhcCCCc--HHHHH
Q 004339 358 AEKGQFDVSKDLFTQVQEAA---SGSVFVQM----PDVWINLAHVYFAQGNFA-LA-MKMYQNCLRKFYYNTD--AQILL 426 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~---p~~~~~~~----~~~~~~la~~~~~~g~~~-~A-~~~~~~al~~~~~~~~--~~~~~ 426 (760)
+..|+|+.|+.+...++... |.....+. ++-....+......|..- -+ ...+..+.....-|.. ...|-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 46788888888888888764 21111111 122333444455555421 11 2222333222212222 66677
Q ss_pred HHHHHHH---------HhccHHHHHHHHHHHHHhCCCC
Q 004339 427 YLARTHY---------EAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 427 ~la~~~~---------~~g~~~~A~~~~~~al~~~p~~ 455 (760)
.+|..++ ..++...|+.+|++|+.++|.-
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 7888774 4568889999999999999864
No 486
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=46.68 E-value=1.9e+02 Score=31.86 Aligned_cols=85 Identities=12% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---hcCCC
Q 004339 347 LYAANGAGVVLAEKG---QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK---FYYNT 420 (760)
Q Consensus 347 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~ 420 (760)
......|-++++..| .|..|+-.+-.+.++.| . ..-..++.+|.+++.. +....
T Consensus 257 ~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~p-----t---------------~~r~~~~~l~~~AI~sa~~~Y~n~ 316 (618)
T PF05053_consen 257 AQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDP-----T---------------PGRPTPLELFNEAISSARTYYNNH 316 (618)
T ss_dssp HHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS----------------------TTS--HHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhcc-----C---------------CCCCCHHHHHHHHHHHHHHHhcCC
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 421 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
+..-|.++|-.|++.++|.+|+.+|-.|-..
T Consensus 317 HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 317 HVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp -SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccceehhhHHHHHHHHHHHHHHHHHHHHH
No 487
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.37 E-value=2e+02 Score=24.97 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCC---CcHHHHHHHHHHHcc-----CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 004339 64 IEKAQELLRKAAKIDP---RDAQAFIDLGELLIS-----SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 135 (760)
Q Consensus 64 ~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~ 135 (760)
...-...|+..+.... +-...|.....-... +....-..++++++........-....-+..+-..|...-.
T Consensus 1 ~~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~ 80 (126)
T PF08311_consen 1 LEQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS 80 (126)
T ss_dssp -HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS
T ss_pred CHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc
Q ss_pred HHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHH
Q 004339 136 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVA 215 (760)
Q Consensus 136 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 215 (760)
.+..+|..+...+ +....+..|...|..+...|++.+
T Consensus 81 --~~~~if~~l~~~~-----------------------------------------IG~~~A~fY~~wA~~le~~~~~~~ 117 (126)
T PF08311_consen 81 --DPREIFKFLYSKG-----------------------------------------IGTKLALFYEEWAEFLEKRGNFKK 117 (126)
T ss_dssp --HHHHHHHHHHHHT-----------------------------------------TSTTBHHHHHHHHHHHHHTT-HHH
T ss_pred --CHHHHHHHHHHcC-----------------------------------------ccHHHHHHHHHHHHHHHHcCCHHH
Q ss_pred HHHHHHHHH
Q 004339 216 ASVLYRLIL 224 (760)
Q Consensus 216 A~~~~~~~l 224 (760)
|..+|...+
T Consensus 118 A~~I~~~Gi 126 (126)
T PF08311_consen 118 ADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
No 488
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=46.15 E-value=12 Score=43.87 Aligned_cols=133 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred ccCccccccccccCccccchhhhhcccCCCCCCcchhhccCCCCCC-CCCCCCCchhhhhhhhHHHhcCCCCCCCCCCCC
Q 004339 627 RKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPI-GQMNDQDDDVEENANDRLAAAGLEDSDVDDEMA 705 (760)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (760)
+..+||.++..+-++....--+--+.+.++.-+.+........-.. ++...+.+-|--+.++++.--.--|...|.++.
T Consensus 1644 kPd~krvrrtsrrdsDqengSdnreSmedeRnagdRase~qesl~iR~ddeaqd~iptprrrrllsgnttndtnaDnEEr 1723 (3015)
T KOG0943|consen 1644 KPDPKRVRRTSRRDSDQENGSDNRESMEDERNAGDRASEIQESLPIRGDDEAQDDIPTPRRRRLLSGNTTNDTNADNEER 1723 (3015)
T ss_pred CCCcchhccccccccccccCcccchhhhhhcChhhhhhhhhhcccccCCccccccCCCchhhhhccCCccCccccchhhh
Q ss_pred CCchHHHHhhhcCCCCCC-hhhhhhcCCCchhhccCcchhhccCCCCCCCCCCCCC
Q 004339 706 PSITAARRRRALSESDDD-EPFERQLRDNTDELQDSDGELRENDHKSNGGAALDDD 760 (760)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (760)
.... ..-...-+..+++ |++++++.++..+.+|.|+++.|-|-+...-+.+|+|
T Consensus 1724 egq~-~ef~GEed~~Dddnddddddd~EaEdddDddDdDdeD~d~~aea~aEdEe~ 1778 (3015)
T KOG0943|consen 1724 EGQE-GEFAGEEDHHDDDNDDDDDDDAEAEDDDDDDDDDDEDMDLDAEAAAEDEED 1778 (3015)
T ss_pred cCCc-ccccCcccccccccccccccchhhccccccccccccccccchhhhhccccc
No 489
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.01 E-value=3.5e+02 Score=27.73 Aligned_cols=154 Identities=10% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhc-CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHH
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQIL 425 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~ 425 (760)
.++...|..|++.|+-+.|.+.+.+.....- -....+.......+|.+|....-..+-++-....+....+-.. -..-
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCC------hhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHH
Q 004339 426 LYLARTHYEAEQWQDCKKSLLRAIHLAPSN------YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFS 499 (760)
Q Consensus 426 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~ 499 (760)
.+-|.......++.+|...|-.++....+. ..+.|..-.-+-.+.+..+...--..+++...+..+.....+..
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dlktKVi~~~Evl~vl~~l~~~~q~l~ 264 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDLKTKVIKCPEVLEVLHKLPSVSQLLN 264 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccchHHhhhcCcHHHHHHhhcCchHHHHHH
Q ss_pred HH
Q 004339 500 HL 501 (760)
Q Consensus 500 ~l 501 (760)
.|
T Consensus 265 SL 266 (393)
T KOG0687|consen 265 SL 266 (393)
T ss_pred HH
No 490
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=45.80 E-value=50 Score=20.17 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAA 377 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 377 (760)
.|..+..++.+.|+++.|..+|....+..
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
No 491
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.70 E-value=3e+02 Score=26.89 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004339 515 KKINTHVEYCKHLLDAAKIHREAAER-----------------------EEQQNRQRQEAARQAALAEEARRKAEEQKKY 571 (760)
Q Consensus 515 ~~~~~~~~~~~~~l~~~~~~~~~~~~-----------------------~e~~~~~k~e~~~~~~~~~e~~~~~~e~~~~ 571 (760)
+++..+.+.-..-|++....+.-.+. .+-+...+++..+...++......++++++.
T Consensus 277 kraeerrqieterlrqeeeelnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqeleqmaeeekkr~eeaeerqra 356 (445)
T KOG2891|consen 277 KRAEERRQIETERLRQEEEELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAEERQRA 356 (445)
T ss_pred HHHHHHhhhhHHHHhhhHhhhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 004339 572 LLEKRKLEDEQKRLRQQEEHFQRVK 596 (760)
Q Consensus 572 ~~~~~~~~~e~~~~~~~~~~~~~~~ 596 (760)
++.+++..+++.+++..++-.+-++
T Consensus 357 eekeq~eaee~~ra~kr~egvkllk 381 (445)
T KOG2891|consen 357 EEKEQKEAEELERARKREEGVKLLK 381 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
No 492
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.69 E-value=2.5e+02 Score=25.95 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 004339 523 YCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSS 602 (760)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 602 (760)
.+.-.-.+-...+..+-..-+.....+..+|..+++ +.+++.++..+++...+++....+.++.+.+...+.+.-+.+
T Consensus 97 ~ie~~~e~eaaE~~el~a~N~a~N~~~~~~R~~Rla--~~~~E~~~~i~ee~~~~~e~~~a~k~qae~eVl~~iersknf 174 (227)
T KOG4691|consen 97 LIERKAEKEAAEHRELMAWNQAENRRLHELRIARLA--QEEREQEQRIAEEQARKAEEVQAWKQQAEREVLQLIERSKNF 174 (227)
T ss_pred HHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred C
Q 004339 603 T 603 (760)
Q Consensus 603 ~ 603 (760)
+
T Consensus 175 I 175 (227)
T KOG4691|consen 175 I 175 (227)
T ss_pred h
No 493
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=45.54 E-value=46 Score=20.88 Aligned_cols=29 Identities=10% Similarity=0.456 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 62 GQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
..++.|..+|++.+...| ++..|+..|..
T Consensus 1 kE~dRAR~IyeR~v~~hp-~~k~WikyAkF 29 (32)
T PF02184_consen 1 KEFDRARSIYERFVLVHP-EVKNWIKYAKF 29 (32)
T ss_pred ChHHHHHHHHHHHHHhCC-CchHHHHHHHh
No 494
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=45.17 E-value=3.8e+02 Score=28.45 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 004339 521 VEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWR 600 (760)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 600 (760)
......+-.+-...-....+...+.+.+.++.++.+..++++.+..++.+++.+..+++.+..+...+.++........+
T Consensus 61 ~~q~~~~q~q~~~~~~~e~~r~~~~~~~aeel~~~~~~eq~rlk~le~er~~~~~~~k~ae~~~k~a~~~~kqa~e~a~k 140 (387)
T PRK09510 61 VEQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAK 140 (387)
T ss_pred HHHHHHHHHhHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=43.59 E-value=54 Score=20.03 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHC
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 44 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 44 (760)
+..|..+..++.+.|+++.|..+|..+.+..
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
No 496
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.08 E-value=59 Score=25.20 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 401 NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 401 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
+.+.|+.++.+|+.. -..|+|++|+.+|..+++.
T Consensus 2 ~l~kai~Lv~~A~~e-----------------D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDE-----------------DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHh-----------------hHhhhHHHHHHHHHHHHHH
No 497
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=42.01 E-value=4.6e+02 Score=28.00 Aligned_cols=220 Identities=14% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC
Q 004339 267 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 346 (760)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 346 (760)
+...+|......|-...+...+.. .+..|...+.+...+..- ........... +.+-.|.......--.+|
T Consensus 202 al~s~a~~~a~qg~~ql~~v~L~h-Kqrfp~~~~~a~~wml~d-~~~v~~~~~~~-----~~~h~al~~~~g~d~~~s-- 272 (482)
T KOG4322|consen 202 ALGSIAVSRSSQGIEQLTQVQLEH-KQRFPCALPLAMKWMLHD-LLEVEENNLNT-----SYYHKALNSWFGGDYQQS-- 272 (482)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHH-HHhcCCCcHHHHHHHHHH-hHHHHHhhhhh-----hHHHHHHHHhhcchHHhh--
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc-CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---- 421 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 421 (760)
+...+..+.++....++..|..++.++.-... ......-..+...++.++..-+.-..+.-+.-.++.....-..
T Consensus 273 vE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~ 352 (482)
T KOG4322|consen 273 VENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLE 352 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhh
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------hhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN------YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAV 495 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~ 495 (760)
..+-..++..+..+|..+.|...+..++..---+ ..+.+-.+.|+.-..... .-..+...+..+..|.
T Consensus 353 a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~------~~e~ld~~~~~L~~A~ 426 (482)
T KOG4322|consen 353 ANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC------ANESLDGFPRYLDLAQ 426 (482)
T ss_pred hhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh------hhhhHHhhHHHHHHHH
Q ss_pred HHHHHH
Q 004339 496 RVFSHL 501 (760)
Q Consensus 496 ~~~~~l 501 (760)
.+|..+
T Consensus 427 ~~f~kL 432 (482)
T KOG4322|consen 427 SIFYKL 432 (482)
T ss_pred HHHHHc
No 498
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=41.83 E-value=3.2e+02 Score=28.96 Aligned_cols=69 Identities=22% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 004339 528 LDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQ 598 (760)
Q Consensus 528 l~~~~~~~~~~~~~e~~~~~k~e~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 598 (760)
+.+....+++.+..+++.-.+++..|...+ +.+++++++++..++++++++|..+............+.
T Consensus 85 ~~~~aeel~~~~~~eq~rlk~le~er~~~~--~~~k~ae~~~k~a~~~~kqa~e~a~ka~e~a~~~aea~~ 153 (387)
T PRK09510 85 EQQQAEELQQKQAAEQERLKQLEKERLAAQ--EQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEA 153 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=41.43 E-value=3.9e+02 Score=27.02 Aligned_cols=197 Identities=16% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHc-
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-----PRDAQAFIDLGELLI- 93 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~- 93 (760)
....++..|+.++|+.+.-.- -++..|.+....+..+.=.+...+.++.. | .......|..+|.
T Consensus 1 ~I~~~Ll~G~~~~Av~~al~~---------~~wa~ALlLAs~~g~e~~~~v~~~y~~~~~~~~~~-~~~~~~~L~~l~~v 70 (284)
T PF12931_consen 1 KIQQLLLVGNREEAVELALDN---------GLWAHALLLASSLGPELWKKVVQEYFRREFSAGSP-SSKITHLLRTLYQV 70 (284)
T ss_dssp HHHHHHHTT-HHHHHHHHHHT---------T-HHHHHHHHHTS-HHHHHHHHHHHHH---------THHHHHHHHHHHHH
T ss_pred CHHHHHhCCCHHHHHHHHHHC---------CChHHHHHHHHhcCHHHHHHHHHHHHHHhccCCCC-cchhhHHHHHHHHH
Q ss_pred -cCCHhHH------------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcccchh
Q 004339 94 -SSDTGAA------------------LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA-LGDGIWL 153 (760)
Q Consensus 94 -~~~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~ 153 (760)
.|+...+ +..|+..+.+.-.+..+.....+..||..+...|+...|.-+|--+ ....+..
T Consensus 71 ~~g~~~~~v~~l~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~~~~~l~~LGd~L~~~g~~~aA~iCYllag~~~~~~~ 150 (284)
T PF12931_consen 71 FSGNSPEAVDELVPNSAAPPLEGEWDLDNWRETLAIILSNRTPEDSQALCALGDRLWQRGRVEAAHICYLLAGNPLSPIP 150 (284)
T ss_dssp TTT-HHHHHHHHHH-----HHHHHHHHHSHHHHHHHHHHTS---SS-TT--HHHHHHHTT-HHHHHHHHHHTT---SSSB
T ss_pred HcCCcHHHHHHhccccccccccccchhcCHHHHHHHHHhCCCcccHHHHHHHHHHHHhCCCcchhHHHHhHcCCccCCcc
Q ss_pred hhhcccchhhhhh--hhhHHHHHHhHHhhhhhhcc--CCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004339 154 TLLDSKTKTYVID--ASASMLQFKDMQLFHRFEND--GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 226 (760)
Q Consensus 154 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~--~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 226 (760)
...........+. ............+++-.... ....-..|......+..|.++...|....|.++++.+...
T Consensus 151 ~~~~~~~~~~llg~~~~~~~~~~~~tEiyEya~~l~~~~~~~~~~~l~~~Kl~yA~~Lae~G~~~~A~kY~d~i~~~ 227 (284)
T PF12931_consen 151 WLDDSNSRFSLLGASSFASPEAIILTEIYEYALSLSSNNPQFGLPHLQPYKLQYASLLAEQGLLSEALKYCDAIASS 227 (284)
T ss_dssp SSTTS--B--SSS---TTSHHHHHHHHHHHHHHHT---STT---CCCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccchhhhhccCCccccHHHHHHHHHHHHHHHhhccCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
No 500
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.39 E-value=6.1e+02 Score=29.22 Aligned_cols=409 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc---CCHHHHHHHHH-----------HHHhcCCCcH
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQELLR-----------KAAKIDPRDA 82 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~-----------~al~~~p~~~ 82 (760)
|+.+++||+...+...+..++++.++ .++.-.-+.+|.-+... +=...-+..+. +.+.+-....
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~--e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii~ILSGe~ 290 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK--EDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKIISILSGEE 290 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh--cchhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHHHHhcCch
Q ss_pred HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc----------------------------
Q 004339 83 QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK---------------------------- 133 (760)
Q Consensus 83 ~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~---------------------------- 133 (760)
..-+.+..++. ..---.-++.....++..--+ ....+.=|.+++..
T Consensus 291 tik~~l~FL~~~N~tD~~iL~~iK~s~r~sv~H-----~A~~iAN~fMh~GTT~D~FlR~NL~WlskAtNWaKFtAtAsL 365 (929)
T KOG2062|consen 291 TIKLYLQFLLRHNNTDLLILEEIKESVRNSVCH-----TATLIANAFMHAGTTSDTFLRNNLDWLSKATNWAKFTATASL 365 (929)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhh-----HHHHHHHHHHhcCCcchHHHHhchhHHhhcchHhhhhhhhhc
Q ss_pred -----CCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHH
Q 004339 134 -----GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 208 (760)
Q Consensus 134 -----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~ 208 (760)
|+...|..++.-.+- ........-....+++.+|.++.
T Consensus 366 GvIH~G~~~~~~~ll~pYLP-------------------------------------~~~~~~s~y~EGGalyAlGLIhA 408 (929)
T KOG2062|consen 366 GVIHRGHENQAMKLLAPYLP-------------------------------------KEAGEGSGYKEGGALYALGLIHA 408 (929)
T ss_pred ceeeccccchHHHHhhhhCC-------------------------------------ccCCCCCCccccchhhhhhcccc
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH-----HHHHHHHHHhhcCCHHH
Q 004339 209 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-----ALSMLGDLELKNDDWVK 283 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~ 283 (760)
..|.- ...++...++ ..++....+....-+--.|--..-...|+++-..--.+.. +-+.+|.+.....+.+.
T Consensus 409 ~hG~~--~~~yL~~~Lk-~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~ea 485 (929)
T KOG2062|consen 409 NHGRG--ITDYLLQQLK-TAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEA 485 (929)
T ss_pred CcCcc--HHHHHHHHHH-hccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHH
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHcC
Q 004339 284 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY--AANGAGVVLAEKG 361 (760)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~g 361 (760)
-...+.-+-+.... ...--+.+|.. +... |..+.|-.+.++++.-...-.. ..+.+|..|.-.|
T Consensus 486 iedm~~Ya~ETQHe-ki~RGl~vGia-L~~y------------grqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg 551 (929)
T KOG2062|consen 486 IEDMLTYAQETQHE-KIIRGLAVGIA-LVVY------------GRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG 551 (929)
T ss_pred HHHHHHHhhhhhHH-HHHHHHHHhHH-HHHh------------hhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHH
Q 004339 362 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 441 (760)
Q Consensus 362 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A 441 (760)
+...-..++.-++.-.. ++..-.--+|.-+.-..+++.-.....-..+.+...-..-+-..||.++.-.|.. +|
T Consensus 552 nnkair~lLh~aVsD~n-----DDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-eA 625 (929)
T KOG2062|consen 552 NNKAIRRLLHVAVSDVN-----DDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-EA 625 (929)
T ss_pred chhhHHHhhcccccccc-----hHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-HH
Q ss_pred HHHHHHHHHhCCCC---hhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHH
Q 004339 442 KKSLLRAIHLAPSN---YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELEN 493 (760)
Q Consensus 442 ~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~ 493 (760)
+..++-... +|.+ ..+...+|+++-++......+.......+.+-+.+-.+
T Consensus 626 i~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 626 INLLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred HHHHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhh
Done!