Query 004339
Match_columns 760
No_of_seqs 1435 out of 3044
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 22:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-42 3.9E-47 374.2 47.4 384 17-469 2-386 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-39 4.4E-44 350.4 44.2 364 5-437 24-388 (388)
3 2xpi_A Anaphase-promoting comp 100.0 4.6E-37 1.6E-41 350.3 46.1 434 12-470 82-564 (597)
4 2gw1_A Mitochondrial precursor 100.0 8.3E-37 2.8E-41 341.2 41.8 399 13-465 5-492 (514)
5 2xpi_A Anaphase-promoting comp 100.0 6.8E-37 2.3E-41 348.9 41.3 421 15-467 118-595 (597)
6 3fp2_A TPR repeat-containing p 100.0 1.9E-35 6.6E-40 332.1 45.1 423 13-461 24-501 (537)
7 3fp2_A TPR repeat-containing p 100.0 5.1E-34 1.7E-38 320.6 42.8 398 47-470 24-476 (537)
8 2gw1_A Mitochondrial precursor 100.0 4.2E-34 1.4E-38 319.2 41.2 398 47-470 5-463 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 4.2E-34 1.4E-38 313.7 38.4 326 4-395 16-372 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 1.2E-33 4.2E-38 310.0 42.0 370 29-455 7-414 (450)
11 3ieg_A DNAJ homolog subfamily 100.0 1.5E-31 5.1E-36 283.3 47.7 345 13-470 2-354 (359)
12 3ieg_A DNAJ homolog subfamily 100.0 5.2E-32 1.8E-36 286.8 43.9 321 5-437 28-355 (359)
13 4g1t_A Interferon-induced prot 100.0 7.6E-32 2.6E-36 297.8 37.4 372 13-463 50-471 (472)
14 4g1t_A Interferon-induced prot 100.0 4.2E-30 1.4E-34 283.8 39.7 401 28-499 25-461 (472)
15 3hym_B Cell division cycle pro 100.0 1.3E-29 4.3E-34 265.3 33.2 289 7-357 15-314 (330)
16 3hym_B Cell division cycle pro 100.0 3.5E-29 1.2E-33 261.8 32.9 289 120-467 22-315 (330)
17 2xm6_A Protein corresponding t 100.0 6.5E-27 2.2E-31 259.3 49.1 374 10-467 35-451 (490)
18 2ooe_A Cleavage stimulation fa 100.0 3.3E-27 1.1E-31 264.4 45.8 428 5-455 4-496 (530)
19 1fch_A Peroxisomal targeting s 100.0 2.9E-29 1E-33 267.1 25.0 237 196-451 97-359 (368)
20 1fch_A Peroxisomal targeting s 100.0 2.2E-28 7.4E-33 260.4 28.7 297 129-499 34-361 (368)
21 2xm6_A Protein corresponding t 100.0 3.3E-25 1.1E-29 245.6 49.3 350 32-468 25-411 (490)
22 2ooe_A Cleavage stimulation fa 100.0 9.1E-26 3.1E-30 252.7 41.8 419 36-499 1-494 (530)
23 4eqf_A PEX5-related protein; a 100.0 1.2E-27 4.1E-32 254.6 24.8 269 120-449 65-354 (365)
24 2h6f_A Protein farnesyltransfe 100.0 5.5E-27 1.9E-31 247.9 28.9 259 189-469 89-366 (382)
25 4eqf_A PEX5-related protein; a 100.0 5.3E-27 1.8E-31 249.6 28.4 273 12-340 63-354 (365)
26 2h6f_A Protein farnesyltransfe 100.0 6.2E-27 2.1E-31 247.5 24.2 260 4-314 87-366 (382)
27 3cv0_A Peroxisome targeting si 99.9 2.8E-26 9.5E-31 239.5 26.7 274 120-455 21-319 (327)
28 3cv0_A Peroxisome targeting si 99.9 5.7E-26 2E-30 237.1 28.4 273 195-500 19-318 (327)
29 3uq3_A Heat shock protein STI1 99.9 1.7E-24 5.8E-29 217.4 28.7 241 195-465 3-256 (258)
30 3u4t_A TPR repeat-containing p 99.9 4E-25 1.4E-29 224.3 24.0 253 196-468 2-267 (272)
31 3e4b_A ALGK; tetratricopeptide 99.9 3.1E-25 1.1E-29 242.1 24.2 361 17-465 6-399 (452)
32 3sf4_A G-protein-signaling mod 99.9 1E-24 3.6E-29 235.0 23.5 282 11-342 6-336 (406)
33 2pl2_A Hypothetical conserved 99.9 1.4E-24 4.9E-29 212.1 21.8 209 11-291 2-211 (217)
34 3mkr_A Coatomer subunit epsilo 99.9 4.6E-23 1.6E-27 210.8 32.6 260 128-459 7-272 (291)
35 3sf4_A G-protein-signaling mod 99.9 3.8E-24 1.3E-28 230.6 25.7 308 45-402 6-363 (406)
36 3uq3_A Heat shock protein STI1 99.9 1E-23 3.5E-28 211.8 26.0 227 12-295 3-237 (258)
37 3u4t_A TPR repeat-containing p 99.9 1.6E-23 5.5E-28 212.5 27.6 257 120-436 3-269 (272)
38 3mkr_A Coatomer subunit epsilo 99.9 5E-23 1.7E-27 210.5 31.2 281 86-445 4-288 (291)
39 2pl2_A Hypothetical conserved 99.9 8.2E-24 2.8E-28 206.7 22.9 199 194-412 2-211 (217)
40 3e4b_A ALGK; tetratricopeptide 99.9 2.5E-23 8.4E-28 227.0 25.3 357 11-452 32-422 (452)
41 4a1s_A PINS, partner of inscut 99.9 3.6E-23 1.2E-27 223.7 24.0 285 11-345 45-375 (411)
42 4a1s_A PINS, partner of inscut 99.9 3.8E-23 1.3E-27 223.4 23.1 282 120-454 48-375 (411)
43 3ro2_A PINS homolog, G-protein 99.9 8.5E-23 2.9E-27 213.4 23.9 284 120-455 5-336 (338)
44 3ro2_A PINS homolog, G-protein 99.9 8.7E-23 3E-27 213.3 23.1 282 14-345 5-335 (338)
45 2q7f_A YRRB protein; TPR, prot 99.9 2.5E-22 8.6E-27 199.7 21.8 219 13-279 22-241 (243)
46 1ouv_A Conserved hypothetical 99.9 5.4E-21 1.9E-25 194.1 30.1 234 193-459 2-259 (273)
47 2vq2_A PILW, putative fimbrial 99.9 5.3E-21 1.8E-25 187.4 26.9 217 9-271 3-222 (225)
48 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.9E-21 1.3E-25 195.0 25.6 259 126-445 11-269 (275)
49 2q7f_A YRRB protein; TPR, prot 99.9 2.7E-21 9.3E-26 192.2 23.6 220 119-400 22-241 (243)
50 2ho1_A Type 4 fimbrial biogene 99.9 4E-21 1.4E-25 192.4 24.9 213 9-269 31-247 (252)
51 1xnf_A Lipoprotein NLPI; TPR, 99.9 4.9E-22 1.7E-26 201.6 16.8 255 15-336 6-269 (275)
52 1ouv_A Conserved hypothetical 99.9 5.1E-20 1.7E-24 186.9 30.5 228 10-297 2-254 (273)
53 2ho1_A Type 4 fimbrial biogene 99.9 1.5E-20 5E-25 188.2 26.1 216 192-460 31-247 (252)
54 3vtx_A MAMA; tetratricopeptide 99.9 5.6E-21 1.9E-25 181.3 21.6 170 195-378 3-172 (184)
55 3vtx_A MAMA; tetratricopeptide 99.9 6.9E-21 2.3E-25 180.7 21.7 171 12-230 3-174 (184)
56 2vq2_A PILW, putative fimbrial 99.9 6.2E-20 2.1E-24 179.8 28.4 214 43-303 3-219 (225)
57 2ond_A Cleavage stimulation fa 99.9 1.2E-19 4.2E-24 187.6 31.7 226 214-458 33-277 (308)
58 4i17_A Hypothetical protein; T 99.9 9.7E-20 3.3E-24 179.3 27.8 213 10-277 3-226 (228)
59 2ond_A Cleavage stimulation fa 99.9 1.8E-20 6.3E-25 193.7 23.4 251 31-355 33-305 (308)
60 4abn_A Tetratricopeptide repea 99.9 7.2E-21 2.4E-25 208.9 20.5 214 29-291 83-318 (474)
61 4e6h_A MRNA 3'-END-processing 99.9 1.6E-17 5.4E-22 186.8 47.4 433 5-458 57-577 (679)
62 3ulq_A Response regulator aspa 99.9 4.7E-20 1.6E-24 197.2 25.9 250 121-453 104-370 (383)
63 3ulq_A Response regulator aspa 99.9 1.8E-20 6E-25 200.5 22.4 231 198-471 104-354 (383)
64 1xi4_A Clathrin heavy chain; a 99.9 1.5E-18 5E-23 200.0 38.8 227 195-471 1103-1329(1630)
65 1xi4_A Clathrin heavy chain; a 99.8 3.9E-18 1.3E-22 196.5 40.3 108 20-149 1055-1163(1630)
66 4abn_A Tetratricopeptide repea 99.8 7.7E-20 2.6E-24 200.6 25.4 203 246-470 83-306 (474)
67 4i17_A Hypothetical protein; T 99.8 5.9E-19 2E-23 173.7 26.9 216 195-465 5-223 (228)
68 3nf1_A KLC 1, kinesin light ch 99.8 2.6E-20 8.9E-25 192.4 16.3 254 9-297 22-310 (311)
69 3nf1_A KLC 1, kinesin light ch 99.8 4.9E-20 1.7E-24 190.4 16.4 249 191-454 21-310 (311)
70 3q15_A PSP28, response regulat 99.8 1.3E-18 4.6E-23 185.5 26.4 239 198-452 102-366 (378)
71 4gyw_A UDP-N-acetylglucosamine 99.8 1.1E-19 3.8E-24 206.9 19.0 174 8-229 3-177 (723)
72 1b89_A Protein (clathrin heavy 99.8 4.8E-20 1.6E-24 192.1 13.6 333 23-453 12-359 (449)
73 4gyw_A UDP-N-acetylglucosamine 99.8 5.9E-19 2E-23 200.9 23.4 173 192-378 4-176 (723)
74 3qky_A Outer membrane assembly 99.8 4.9E-19 1.7E-23 178.3 19.8 215 8-283 9-250 (261)
75 3qky_A Outer membrane assembly 99.8 3E-18 1E-22 172.5 24.0 106 192-297 10-129 (261)
76 3q15_A PSP28, response regulat 99.8 3.3E-18 1.1E-22 182.4 25.1 238 121-415 102-365 (378)
77 3dra_A Protein farnesyltransfe 99.8 8.8E-18 3E-22 170.2 25.8 248 199-465 34-302 (306)
78 1hz4_A MALT regulatory protein 99.8 1.3E-17 4.4E-22 177.5 28.3 316 48-455 14-353 (373)
79 1hz4_A MALT regulatory protein 99.8 2.1E-16 7.1E-21 168.1 36.0 311 13-415 13-349 (373)
80 4e6h_A MRNA 3'-END-processing 99.8 4.4E-16 1.5E-20 175.1 37.9 435 30-507 48-573 (679)
81 3dra_A Protein farnesyltransfe 99.8 4.2E-17 1.4E-21 165.2 25.0 241 18-307 36-300 (306)
82 1qqe_A Vesicular transport pro 99.8 1.1E-17 3.8E-22 171.2 21.1 259 32-357 3-284 (292)
83 3urz_A Uncharacterized protein 99.8 1.1E-17 3.7E-22 161.9 18.1 169 13-230 3-190 (208)
84 2pzi_A Probable serine/threoni 99.8 4.1E-18 1.4E-22 195.3 17.1 130 10-148 390-528 (681)
85 1qqe_A Vesicular transport pro 99.8 1.8E-17 6E-22 169.8 19.9 253 66-396 3-284 (292)
86 2pzi_A Probable serine/threoni 99.8 1.3E-17 4.3E-22 191.3 20.6 201 191-414 388-597 (681)
87 3as5_A MAMA; tetratricopeptide 99.7 1E-16 3.5E-21 151.3 21.4 173 265-458 8-180 (186)
88 3urz_A Uncharacterized protein 99.7 1.8E-16 6E-21 153.4 22.3 177 120-355 4-198 (208)
89 4ga2_A E3 SUMO-protein ligase 99.7 4.5E-18 1.5E-22 155.0 9.9 136 327-469 11-147 (150)
90 3as5_A MAMA; tetratricopeptide 99.7 1.5E-16 5E-21 150.2 20.6 170 195-378 6-175 (186)
91 3edt_B KLC 2, kinesin light ch 99.7 2.1E-17 7.2E-22 167.7 15.6 235 25-294 12-281 (283)
92 1b89_A Protein (clathrin heavy 99.7 6.2E-18 2.1E-22 176.2 11.6 336 13-450 31-384 (449)
93 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.4E-16 8.2E-21 154.5 21.2 210 196-457 3-219 (225)
94 4ga2_A E3 SUMO-protein ligase 99.7 2.4E-17 8.1E-22 150.2 13.0 145 88-280 3-149 (150)
95 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.7E-16 5.8E-21 155.6 19.1 118 13-151 3-127 (225)
96 3edt_B KLC 2, kinesin light ch 99.7 7.2E-17 2.5E-21 163.8 16.2 230 209-452 13-282 (283)
97 4gco_A Protein STI-1; structur 99.7 1.3E-16 4.3E-21 140.4 14.3 122 338-466 4-125 (126)
98 3dss_A Geranylgeranyl transfer 99.7 5.4E-15 1.8E-19 150.4 27.9 238 206-464 38-317 (331)
99 3q7a_A Farnesyltransferase alp 99.7 7.7E-15 2.6E-19 149.7 28.2 253 192-463 49-344 (349)
100 4gco_A Protein STI-1; structur 99.7 2.3E-16 7.9E-21 138.7 13.8 121 5-130 4-125 (126)
101 2r5s_A Uncharacterized protein 99.7 1.9E-16 6.4E-21 148.7 13.8 167 10-225 2-172 (176)
102 2r5s_A Uncharacterized protein 99.7 3.2E-16 1.1E-20 147.1 15.2 171 228-415 3-173 (176)
103 3dss_A Geranylgeranyl transfer 99.7 9E-15 3.1E-19 148.7 26.7 236 23-307 38-316 (331)
104 3q7a_A Farnesyltransferase alp 99.7 4.9E-15 1.7E-19 151.2 21.3 243 7-297 47-334 (349)
105 3qou_A Protein YBBN; thioredox 99.7 7.6E-15 2.6E-19 149.5 22.1 170 227-415 113-284 (287)
106 2ifu_A Gamma-SNAP; membrane fu 99.6 1.8E-15 6.1E-20 156.0 16.8 209 26-297 3-226 (307)
107 2ifu_A Gamma-SNAP; membrane fu 99.6 2.6E-15 8.9E-20 154.8 17.7 211 210-458 4-230 (307)
108 3qou_A Protein YBBN; thioredox 99.6 3.1E-15 1.1E-19 152.4 16.7 168 44-259 113-283 (287)
109 3gyz_A Chaperone protein IPGC; 99.6 6.8E-16 2.3E-20 139.7 10.0 123 327-456 16-138 (151)
110 4f3v_A ESX-1 secretion system 99.6 1.4E-15 4.9E-20 150.0 12.7 210 15-274 8-250 (282)
111 3gyz_A Chaperone protein IPGC; 99.6 2.5E-15 8.6E-20 136.0 12.0 110 5-114 27-137 (151)
112 2vsy_A XCC0866; transferase, g 99.6 1.2E-14 4.1E-19 163.7 19.5 164 27-238 2-169 (568)
113 3rjv_A Putative SEL1 repeat pr 99.6 1.2E-13 4.1E-18 133.7 23.8 186 31-273 3-208 (212)
114 3rjv_A Putative SEL1 repeat pr 99.6 5.4E-14 1.9E-18 136.1 20.6 188 215-429 4-207 (212)
115 2vsy_A XCC0866; transferase, g 99.6 2.1E-14 7.1E-19 161.8 20.4 165 278-463 2-169 (568)
116 2vgx_A Chaperone SYCD; alterna 99.6 5.9E-15 2E-19 133.8 12.7 126 333-465 7-132 (148)
117 4f3v_A ESX-1 secretion system 99.6 9.6E-15 3.3E-19 144.1 13.2 230 198-462 8-247 (282)
118 2c2l_A CHIP, carboxy terminus 99.6 4.2E-14 1.4E-18 143.5 17.6 196 11-259 1-198 (281)
119 1p5q_A FKBP52, FK506-binding p 99.6 7.2E-16 2.5E-20 160.8 4.6 166 95-293 127-293 (336)
120 1p5q_A FKBP52, FK506-binding p 99.6 1.5E-15 5E-20 158.5 6.8 154 277-451 125-294 (336)
121 2xcb_A PCRH, regulatory protei 99.6 2.7E-14 9.1E-19 128.6 12.5 126 334-466 5-130 (142)
122 2fo7_A Synthetic consensus TPR 99.5 3.4E-13 1.2E-17 119.2 19.0 135 301-455 2-136 (136)
123 2xcb_A PCRH, regulatory protei 99.5 5.1E-14 1.7E-18 126.7 13.2 110 5-114 9-119 (142)
124 3mv2_B Coatomer subunit epsilo 99.5 2.6E-13 8.8E-18 135.7 19.0 227 198-460 46-291 (310)
125 2vgx_A Chaperone SYCD; alterna 99.5 7.9E-14 2.7E-18 126.3 13.7 110 5-114 12-122 (148)
126 2fo7_A Synthetic consensus TPR 99.5 3.8E-13 1.3E-17 118.9 17.4 132 15-151 2-134 (136)
127 3upv_A Heat shock protein STI1 99.5 2.4E-13 8.3E-18 119.4 15.4 122 11-132 1-124 (126)
128 2uy1_A Cleavage stimulation fa 99.5 6.1E-11 2.1E-15 129.7 37.6 375 12-450 12-412 (493)
129 3upv_A Heat shock protein STI1 99.5 2.2E-13 7.4E-18 119.7 14.7 118 344-468 1-124 (126)
130 2c2l_A CHIP, carboxy terminus 99.5 5.7E-14 2E-18 142.5 12.5 197 194-414 1-198 (281)
131 2e2e_A Formate-dependent nitri 99.5 3.3E-13 1.1E-17 126.4 15.5 127 327-460 24-153 (177)
132 2uy1_A Cleavage stimulation fa 99.5 3.9E-11 1.3E-15 131.2 34.0 353 26-448 6-380 (493)
133 1hh8_A P67PHOX, NCF-2, neutrop 99.5 8.8E-13 3E-17 127.6 18.4 138 300-458 6-157 (213)
134 2qfc_A PLCR protein; TPR, HTH, 99.5 6E-12 2E-16 128.6 25.3 181 227-420 71-271 (293)
135 2qfc_A PLCR protein; TPR, HTH, 99.5 1.8E-12 6E-17 132.5 21.1 180 11-227 72-267 (293)
136 3mv2_B Coatomer subunit epsilo 99.5 4.3E-12 1.5E-16 126.8 23.0 189 195-416 98-306 (310)
137 3sz7_A HSC70 cochaperone (SGT) 99.5 1.1E-12 3.6E-17 121.3 16.6 116 343-465 7-122 (164)
138 2lni_A Stress-induced-phosphop 99.5 7.2E-13 2.5E-17 117.1 14.3 123 8-135 10-133 (133)
139 3q49_B STIP1 homology and U bo 99.5 1.2E-12 4.3E-17 116.5 15.9 126 8-133 3-129 (137)
140 1a17_A Serine/threonine protei 99.5 6.7E-12 2.3E-16 115.7 21.1 138 347-503 13-152 (166)
141 2vyi_A SGTA protein; chaperone 99.5 6.4E-13 2.2E-17 116.9 13.5 125 7-136 5-130 (131)
142 3sz7_A HSC70 cochaperone (SGT) 99.5 6.3E-13 2.1E-17 122.8 13.9 117 8-129 5-122 (164)
143 1a17_A Serine/threonine protei 99.5 3E-12 1E-16 118.1 18.3 133 300-452 13-147 (166)
144 4gcn_A Protein STI-1; structur 99.4 2E-12 6.7E-17 113.6 15.7 104 346-454 7-115 (127)
145 3u3w_A Transcriptional activat 99.4 3.7E-12 1.3E-16 130.1 19.6 167 237-416 81-267 (293)
146 2fbn_A 70 kDa peptidylprolyl i 99.4 2.8E-13 9.7E-18 129.6 10.3 152 270-442 9-176 (198)
147 2fbn_A 70 kDa peptidylprolyl i 99.4 5.3E-13 1.8E-17 127.7 12.0 166 94-291 17-183 (198)
148 4gcn_A Protein STI-1; structur 99.4 7.5E-13 2.6E-17 116.3 11.8 102 12-113 6-115 (127)
149 2lni_A Stress-induced-phosphop 99.4 1.7E-12 5.8E-17 114.7 14.2 120 343-469 12-131 (133)
150 3u3w_A Transcriptional activat 99.4 4.2E-12 1.4E-16 129.7 19.2 175 16-227 77-267 (293)
151 4b4t_Q 26S proteasome regulato 99.4 2.1E-11 7.1E-16 132.1 25.4 211 14-261 4-246 (434)
152 2vyi_A SGTA protein; chaperone 99.4 2.8E-12 9.4E-17 112.7 14.8 121 343-470 8-128 (131)
153 2e2e_A Formate-dependent nitri 99.4 8E-13 2.7E-17 123.8 11.9 129 18-151 14-146 (177)
154 1dce_A Protein (RAB geranylger 99.4 1.3E-11 4.4E-16 137.1 23.6 137 327-470 87-240 (567)
155 1na0_A Designed protein CTPR3; 99.4 7.3E-12 2.5E-16 108.9 17.0 120 343-469 4-124 (125)
156 1hh8_A P67PHOX, NCF-2, neutrop 99.4 5.9E-12 2E-16 121.7 17.9 135 196-346 5-154 (213)
157 1dce_A Protein (RAB geranylger 99.4 6E-12 2.1E-16 139.8 19.9 180 206-404 37-244 (567)
158 3rkv_A Putative peptidylprolyl 99.4 4.6E-12 1.6E-16 116.7 16.0 117 347-470 11-146 (162)
159 3q49_B STIP1 homology and U bo 99.4 5.6E-12 1.9E-16 112.2 15.9 120 341-467 3-127 (137)
160 2hr2_A Hypothetical protein; a 99.4 2.2E-12 7.7E-17 114.9 12.8 122 347-468 11-148 (159)
161 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 5.6E-13 1.9E-17 145.1 10.5 137 327-470 248-399 (457)
162 2hr2_A Hypothetical protein; a 99.4 3.1E-12 1.1E-16 114.0 13.1 102 14-115 11-136 (159)
163 1na0_A Designed protein CTPR3; 99.4 9.1E-12 3.1E-16 108.3 15.9 120 10-134 4-125 (125)
164 1hxi_A PEX5, peroxisome target 99.4 1.9E-12 6.6E-17 112.5 11.5 101 14-114 17-118 (121)
165 1elw_A TPR1-domain of HOP; HOP 99.4 1.4E-11 4.7E-16 106.0 16.2 114 346-466 3-116 (118)
166 1hxi_A PEX5, peroxisome target 99.4 6.2E-12 2.1E-16 109.3 13.6 102 349-457 19-120 (121)
167 3gw4_A Uncharacterized protein 99.4 8.5E-12 2.9E-16 119.4 15.5 165 276-454 3-179 (203)
168 3gw4_A Uncharacterized protein 99.4 1.1E-11 3.7E-16 118.7 16.1 166 24-227 2-177 (203)
169 3rkv_A Putative peptidylprolyl 99.3 4.4E-12 1.5E-16 116.8 11.8 117 13-134 10-146 (162)
170 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 2.1E-12 7.2E-17 140.5 10.5 166 95-293 248-414 (457)
171 4b4t_Q 26S proteasome regulato 99.3 8.5E-11 2.9E-15 127.3 23.0 208 197-417 4-247 (434)
172 1elw_A TPR1-domain of HOP; HOP 99.3 1.7E-11 5.9E-16 105.3 14.0 113 13-130 3-116 (118)
173 2dba_A Smooth muscle cell asso 99.3 3.1E-11 1.1E-15 108.7 16.1 118 342-466 23-143 (148)
174 2kck_A TPR repeat; tetratricop 99.3 1.4E-11 4.8E-16 104.9 12.9 106 9-114 1-110 (112)
175 2dba_A Smooth muscle cell asso 99.3 1.3E-11 4.3E-16 111.4 13.2 122 6-132 20-145 (148)
176 2xev_A YBGF; tetratricopeptide 99.3 3.5E-11 1.2E-15 105.7 15.2 115 14-133 2-123 (129)
177 1elr_A TPR2A-domain of HOP; HO 99.3 3.6E-11 1.2E-15 105.5 14.3 119 346-470 3-126 (131)
178 2xev_A YBGF; tetratricopeptide 99.3 5.4E-11 1.8E-15 104.5 14.9 110 349-465 4-119 (129)
179 1wao_1 Serine/threonine protei 99.3 4.5E-12 1.5E-16 138.4 9.1 130 11-145 3-135 (477)
180 3ro3_A PINS homolog, G-protein 99.3 6.9E-11 2.4E-15 108.0 14.2 142 300-454 9-161 (164)
181 1wao_1 Serine/threonine protei 99.3 2.8E-12 9.6E-17 140.1 5.5 129 327-462 20-161 (477)
182 1elr_A TPR2A-domain of HOP; HO 99.2 3.1E-11 1.1E-15 106.0 11.1 117 12-134 2-126 (131)
183 2kck_A TPR repeat; tetratricop 99.2 6.3E-11 2.2E-15 100.7 12.7 105 193-297 2-109 (112)
184 1zu2_A Mitochondrial import re 99.2 4.3E-11 1.5E-15 106.3 10.6 109 327-465 16-134 (158)
185 1zu2_A Mitochondrial import re 99.2 5.7E-11 2E-15 105.5 10.8 121 358-504 13-147 (158)
186 2if4_A ATFKBP42; FKBP-like, al 99.2 1.5E-11 5.1E-16 128.1 7.7 138 300-457 179-334 (338)
187 2if4_A ATFKBP42; FKBP-like, al 99.2 3.3E-11 1.1E-15 125.4 9.7 143 193-348 175-334 (338)
188 1ihg_A Cyclophilin 40; ppiase 99.2 3.4E-10 1.2E-14 119.1 17.3 117 347-470 223-355 (370)
189 3ro3_A PINS homolog, G-protein 99.2 1.2E-10 4.2E-15 106.3 12.0 138 12-149 7-158 (164)
190 1ihg_A Cyclophilin 40; ppiase 99.2 1.1E-10 3.8E-15 122.8 12.8 124 14-142 223-363 (370)
191 3k9i_A BH0479 protein; putativ 99.2 8.3E-11 2.9E-15 101.4 9.6 93 360-459 3-98 (117)
192 3k9i_A BH0479 protein; putativ 99.1 1.7E-10 5.8E-15 99.5 10.4 99 132-270 2-100 (117)
193 2kat_A Uncharacterized protein 99.1 1.3E-09 4.3E-14 93.5 13.2 101 331-436 3-103 (115)
194 1na3_A Designed protein CTPR2; 99.0 2.1E-09 7.3E-14 87.4 10.6 84 10-93 5-88 (91)
195 2kat_A Uncharacterized protein 99.0 4.5E-09 1.5E-13 90.1 12.8 83 32-114 3-86 (115)
196 2l6j_A TPR repeat-containing p 99.0 5.8E-10 2E-14 94.7 6.4 88 13-100 3-97 (111)
197 3ma5_A Tetratricopeptide repea 98.9 5E-09 1.7E-13 87.2 10.7 89 343-436 3-91 (100)
198 1na3_A Designed protein CTPR2; 98.9 1.2E-08 4.2E-13 82.8 12.5 87 193-279 5-91 (91)
199 2l6j_A TPR repeat-containing p 98.9 1.4E-09 4.8E-14 92.3 6.4 96 196-291 3-104 (111)
200 1klx_A Cysteine rich protein B 98.9 3E-08 1E-12 88.0 14.8 120 327-463 9-136 (138)
201 3ma5_A Tetratricopeptide repea 98.9 5.8E-09 2E-13 86.8 9.1 72 9-80 2-73 (100)
202 2kc7_A BFR218_protein; tetratr 98.9 6.5E-09 2.2E-13 86.2 9.1 91 17-114 3-94 (99)
203 3n71_A Histone lysine methyltr 98.8 4E-08 1.4E-12 106.3 12.9 126 327-452 323-465 (490)
204 3u64_A Protein TP_0956; tetrat 98.7 3E-06 1E-10 82.3 23.1 106 192-297 147-272 (301)
205 1klx_A Cysteine rich protein B 98.7 1.6E-07 5.3E-12 83.3 13.3 119 280-429 10-136 (138)
206 2kc7_A BFR218_protein; tetratr 98.7 3.4E-08 1.2E-12 81.7 7.9 91 351-456 4-95 (99)
207 3n71_A Histone lysine methyltr 98.6 3.2E-07 1.1E-11 99.2 15.6 135 125-294 314-464 (490)
208 3bee_A Putative YFRE protein; 98.6 1.6E-07 5.5E-12 76.2 9.8 73 10-82 2-77 (93)
209 3ly7_A Transcriptional activat 98.6 4E-07 1.4E-11 92.5 14.8 139 8-152 188-342 (372)
210 3ly7_A Transcriptional activat 98.6 6.2E-07 2.1E-11 91.1 16.0 123 327-457 213-345 (372)
211 3u64_A Protein TP_0956; tetrat 98.6 8.9E-06 3E-10 79.1 23.1 190 214-418 49-272 (301)
212 2v5f_A Prolyl 4-hydroxylase su 98.6 6.2E-07 2.1E-11 74.8 12.6 81 385-465 4-89 (104)
213 4g26_A Pentatricopeptide repea 98.5 1.6E-05 5.4E-10 86.7 23.0 177 267-452 28-205 (501)
214 4g26_A Pentatricopeptide repea 98.4 4.1E-05 1.4E-09 83.4 25.6 137 279-433 84-221 (501)
215 1pc2_A Mitochondria fission pr 98.4 2.7E-06 9.1E-11 74.6 12.0 97 364-466 15-115 (152)
216 2v5f_A Prolyl 4-hydroxylase su 98.4 2.7E-06 9.2E-11 70.9 10.5 77 13-89 4-87 (104)
217 3bee_A Putative YFRE protein; 98.3 4.2E-06 1.4E-10 67.8 9.9 70 194-263 3-75 (93)
218 1pc2_A Mitochondria fission pr 98.3 2.5E-06 8.4E-11 74.8 8.4 75 10-84 28-107 (152)
219 3qww_A SET and MYND domain-con 98.2 4.9E-06 1.7E-10 88.4 12.2 100 359-458 310-423 (433)
220 3qww_A SET and MYND domain-con 98.2 6.5E-06 2.2E-10 87.5 11.6 90 327-416 312-412 (433)
221 3qwp_A SET and MYND domain-con 98.2 7.9E-06 2.7E-10 87.0 12.1 104 356-459 296-413 (429)
222 3qwp_A SET and MYND domain-con 98.1 7.4E-06 2.5E-10 87.2 10.3 109 327-435 301-426 (429)
223 1nzn_A CGI-135 protein, fissio 97.9 0.00011 3.6E-09 61.9 11.0 96 363-465 17-117 (126)
224 4h7y_A Dual specificity protei 97.7 0.00033 1.1E-08 60.0 11.2 105 192-297 8-126 (161)
225 4h7y_A Dual specificity protei 97.6 0.0012 4E-08 56.7 13.0 105 260-378 8-125 (161)
226 3ffl_A Anaphase-promoting comp 97.5 0.00025 8.5E-09 62.4 8.2 51 327-377 34-93 (167)
227 1nzn_A CGI-135 protein, fissio 97.5 0.00072 2.5E-08 56.8 10.6 81 194-274 32-117 (126)
228 3ffl_A Anaphase-promoting comp 97.4 0.0014 4.6E-08 57.8 11.1 118 348-466 21-165 (167)
229 3o48_A Mitochondria fission 1 97.2 0.0034 1.1E-07 52.9 11.3 80 384-465 38-121 (134)
230 3txn_A 26S proteasome regulato 97.2 0.05 1.7E-06 56.2 22.5 259 197-470 19-303 (394)
231 1y8m_A FIS1; mitochondria, unk 97.2 0.0094 3.2E-07 50.9 13.4 80 384-465 37-120 (144)
232 1y8m_A FIS1; mitochondria, unk 96.9 0.0086 3E-07 51.1 11.0 77 11-87 36-116 (144)
233 3o48_A Mitochondria fission 1 96.9 0.0065 2.2E-07 51.1 9.8 76 13-88 39-118 (134)
234 3txn_A 26S proteasome regulato 96.7 0.11 3.6E-06 53.7 19.9 103 351-453 103-212 (394)
235 3kae_A CDC27, possible protein 96.3 0.35 1.2E-05 42.2 16.9 40 293-345 201-240 (242)
236 4ady_A RPN2, 26S proteasome re 96.2 0.61 2.1E-05 53.4 23.4 243 197-471 413-676 (963)
237 3kae_A CDC27, possible protein 95.8 0.13 4.4E-06 44.8 11.9 117 327-456 16-148 (242)
238 4b4t_R RPN7, 26S proteasome re 95.6 0.097 3.3E-06 55.4 12.9 108 346-455 130-241 (429)
239 3spa_A Mtrpol, DNA-directed RN 95.5 0.18 6.1E-06 57.9 15.0 104 347-452 127-231 (1134)
240 4gns_B Protein CSD3, chitin bi 95.5 0.076 2.6E-06 59.6 12.0 130 11-146 243-397 (754)
241 4gns_B Protein CSD3, chitin bi 95.3 0.088 3E-06 59.1 12.0 59 349-412 339-397 (754)
242 4b4t_P 26S proteasome regulato 95.3 1.8 6E-05 45.8 21.6 104 348-451 138-247 (445)
243 1qsa_A Protein (soluble lytic 95.1 4.9 0.00017 44.2 29.8 116 327-450 228-347 (618)
244 4b4t_S RPN3, 26S proteasome re 95.0 0.058 2E-06 57.1 8.6 129 327-457 150-305 (523)
245 4b4t_P 26S proteasome regulato 94.9 4.6 0.00016 42.6 24.7 99 196-294 136-247 (445)
246 4ady_A RPN2, 26S proteasome re 94.3 5.1 0.00018 45.9 22.9 184 241-449 384-587 (963)
247 3mkq_A Coatomer beta'-subunit; 94.3 2.4 8.1E-05 48.8 21.4 100 205-339 607-707 (814)
248 3spa_A Mtrpol, DNA-directed RN 93.8 0.94 3.2E-05 52.1 15.4 109 300-426 127-240 (1134)
249 1zbp_A Hypothetical protein VP 93.6 0.29 1E-05 46.8 9.3 119 326-456 10-134 (273)
250 3mkq_B Coatomer subunit alpha; 93.5 0.82 2.8E-05 40.9 11.6 97 327-448 19-115 (177)
251 1qsa_A Protein (soluble lytic 93.2 12 0.00042 41.1 31.3 358 36-446 57-437 (618)
252 1zbp_A Hypothetical protein VP 93.0 3.6 0.00012 39.4 15.7 57 58-114 7-64 (273)
253 1ya0_A SMG-7 transcript varian 92.8 0.44 1.5E-05 50.9 10.5 77 50-131 154-231 (497)
254 3mkq_A Coatomer beta'-subunit; 92.7 1.2 4.2E-05 51.3 15.1 29 46-74 679-707 (814)
255 3mkq_B Coatomer subunit alpha; 92.6 5 0.00017 35.8 15.3 43 209-256 17-59 (177)
256 4fhn_B Nucleoporin NUP120; pro 92.4 1.5 5E-05 52.8 15.6 124 19-146 817-964 (1139)
257 2ff4_A Probable regulatory pro 92.2 3.3 0.00011 42.8 16.2 60 199-258 173-232 (388)
258 2ff4_A Probable regulatory pro 91.7 2.2 7.5E-05 44.2 14.1 92 202-293 120-233 (388)
259 4b4t_R RPN7, 26S proteasome re 91.4 0.98 3.4E-05 47.6 11.2 102 196-297 130-240 (429)
260 1ya0_A SMG-7 transcript varian 90.4 1.1 3.9E-05 47.7 10.4 78 199-276 154-231 (497)
261 4b4t_S RPN3, 26S proteasome re 90.2 2 6.8E-05 45.5 11.8 141 94-264 149-303 (523)
262 4fhn_B Nucleoporin NUP120; pro 89.0 5.6 0.00019 47.7 16.2 170 236-439 817-988 (1139)
263 3lpz_A GET4 (YOR164C homolog); 88.5 21 0.00072 35.5 25.3 143 193-360 132-295 (336)
264 3lpz_A GET4 (YOR164C homolog); 85.2 32 0.0011 34.2 26.7 28 262-289 133-160 (336)
265 3lvg_A Clathrin heavy chain 1; 83.0 0.00016 5.6E-09 74.5 -22.9 372 11-444 51-476 (624)
266 3lvg_A Clathrin heavy chain 1; 82.9 6.4E-05 2.2E-09 77.5 -25.9 264 47-408 53-326 (624)
267 2wpv_A GET4, UPF0363 protein Y 81.8 42 0.0014 33.0 22.1 15 327-341 202-216 (312)
268 4gq2_M Nucleoporin NUP120; bet 77.8 6.9 0.00024 45.8 10.0 54 18-75 814-867 (950)
269 3esl_A Checkpoint serine/threo 76.4 45 0.0015 30.3 14.0 68 345-416 78-145 (202)
270 1wy6_A Hypothetical protein ST 65.8 59 0.002 27.5 9.9 57 394-452 99-155 (172)
271 2wpv_A GET4, UPF0363 protein Y 59.8 1.4E+02 0.0046 29.4 22.3 126 19-144 18-158 (312)
272 2wvi_A Mitotic checkpoint seri 59.6 25 0.00085 30.8 7.1 47 366-415 79-125 (164)
273 4gq2_M Nucleoporin NUP120; bet 59.5 40 0.0014 39.3 11.2 36 422-457 897-933 (950)
274 3ax2_A Mitochondrial import re 57.3 24 0.00081 26.1 5.5 29 19-47 22-50 (73)
275 3t5v_B Nuclear mRNA export pro 55.6 12 0.00043 39.1 5.4 65 391-455 181-254 (455)
276 3re2_A Predicted protein; meni 54.5 1.4E+02 0.0048 29.6 11.8 81 351-451 239-325 (472)
277 2qx5_A Nucleoporin NIC96; mRNA 52.8 1.7E+02 0.006 32.1 14.1 33 422-455 536-570 (661)
278 3u84_A Menin; MLL, JUND, ledgf 51.7 1.5E+02 0.0052 30.0 11.8 81 351-451 261-347 (550)
279 4aez_C MAD3, mitotic spindle c 50.6 33 0.0011 31.7 6.7 53 364-419 131-183 (223)
280 3t5x_A PCI domain-containing p 50.1 16 0.00056 33.5 4.7 31 387-417 15-45 (203)
281 1wy6_A Hypothetical protein ST 49.5 1.2E+02 0.0041 25.7 9.9 54 206-259 100-153 (172)
282 1o9d_A 14-3-3-like protein C; 49.0 1.8E+02 0.0061 27.6 17.2 44 198-241 9-55 (260)
283 2npm_A 14-3-3 domain containin 48.1 1.9E+02 0.0063 27.5 18.9 44 198-241 29-76 (260)
284 2ijq_A Hypothetical protein; s 46.8 68 0.0023 27.9 7.7 60 17-76 35-103 (161)
285 3uzd_A 14-3-3 protein gamma; s 46.4 1.9E+02 0.0065 27.1 14.8 29 200-228 7-35 (248)
286 2wvi_A Mitotic checkpoint seri 46.4 1.5E+02 0.0051 25.9 9.9 61 386-452 66-126 (164)
287 3ubw_A 14-3-3E, 14-3-3 protein 44.7 2.1E+02 0.0071 27.1 16.7 31 198-228 32-62 (261)
288 2v6y_A AAA family ATPase, P60 43.8 37 0.0013 25.8 5.0 18 397-414 22-39 (83)
289 2br9_A 14-3-3E, 14-3-3 protein 43.5 2.1E+02 0.007 26.7 14.0 45 49-93 6-51 (234)
290 4b4t_O 26S proteasome regulato 42.1 2.9E+02 0.01 28.0 13.5 98 354-451 83-198 (393)
291 1om2_A Protein (mitochondrial 40.4 33 0.0011 26.8 4.2 29 18-46 24-52 (95)
292 3t5x_A PCI domain-containing p 39.5 44 0.0015 30.5 5.8 77 14-97 14-95 (203)
293 3mzk_B Protein transport prote 39.2 3.4E+02 0.012 28.0 20.9 27 120-146 278-304 (441)
294 4aez_C MAD3, mitotic spindle c 38.5 2.1E+02 0.0071 26.4 10.0 80 367-452 97-180 (223)
295 3ax2_A Mitochondrial import re 38.1 78 0.0027 23.3 5.7 32 52-83 21-52 (73)
296 3t5v_B Nuclear mRNA export pro 38.0 84 0.0029 32.8 8.3 99 97-230 142-254 (455)
297 3esl_A Checkpoint serine/threo 37.8 2.3E+02 0.0079 25.6 14.6 84 368-452 58-145 (202)
298 2vkj_A TM1634; membrane protei 37.8 91 0.0031 23.7 5.9 30 386-415 53-82 (106)
299 2w2u_A Hypothetical P60 katani 37.7 53 0.0018 24.9 5.0 17 433-449 30-46 (83)
300 2v6y_A AAA family ATPase, P60 36.7 55 0.0019 24.8 5.0 18 433-450 22-39 (83)
301 3re2_A Predicted protein; meni 36.1 99 0.0034 30.6 7.6 68 81-148 254-324 (472)
302 2ijq_A Hypothetical protein; s 35.1 1.6E+02 0.0056 25.5 8.3 64 388-451 34-104 (161)
303 1ko6_B Nuclear pore complex pr 34.8 16 0.00054 26.0 1.4 17 693-709 3-19 (64)
304 2br9_A 14-3-3E, 14-3-3 protein 34.2 2.9E+02 0.0099 25.7 15.3 43 199-241 7-50 (234)
305 3ubw_A 14-3-3E, 14-3-3 protein 33.9 3.1E+02 0.011 25.9 14.7 47 47-93 30-77 (261)
306 4a1g_A Mitotic checkpoint seri 33.1 2.3E+02 0.008 24.3 11.3 48 365-415 83-130 (152)
307 3iqu_A 14-3-3 protein sigma; s 31.7 3.2E+02 0.011 25.4 12.9 30 199-228 10-39 (236)
308 2rpa_A Katanin P60 ATPase-cont 31.0 46 0.0016 24.9 3.5 27 389-415 15-41 (78)
309 2crb_A Nuclear receptor bindin 30.3 80 0.0027 24.3 4.7 29 386-414 15-43 (97)
310 2cwy_A Hypothetical protein TT 30.2 1.2E+02 0.0042 23.5 6.1 57 18-76 5-67 (94)
311 1om2_A Protein (mitochondrial 29.9 49 0.0017 25.8 3.6 30 390-419 24-53 (95)
312 2crb_A Nuclear receptor bindin 29.0 84 0.0029 24.2 4.6 29 422-450 15-43 (97)
313 1f5n_A Interferon-induced guan 28.1 6E+02 0.02 27.4 21.2 30 384-414 311-340 (592)
314 2rpa_A Katanin P60 ATPase-cont 28.0 51 0.0018 24.6 3.4 29 423-451 13-41 (78)
315 4gq4_A Menin; tumor suppressor 27.9 1.6E+02 0.0053 30.0 7.6 68 81-148 261-331 (489)
316 1o9d_A 14-3-3-like protein C; 26.5 4.1E+02 0.014 25.1 17.0 31 231-261 8-38 (260)
317 2cpt_A SKD1 protein, vacuolar 26.2 97 0.0033 25.3 5.1 19 433-451 29-47 (117)
318 3u84_A Menin; MLL, JUND, ledgf 26.0 1.8E+02 0.0061 29.5 7.6 68 81-148 276-346 (550)
319 2o8p_A 14-3-3 domain containin 25.0 4.1E+02 0.014 24.5 20.9 171 19-225 11-196 (227)
320 2cpt_A SKD1 protein, vacuolar 24.7 2.8E+02 0.0096 22.5 8.5 23 483-505 33-55 (117)
321 2cfu_A SDSA1; SDS-hydrolase, l 22.3 99 0.0034 34.2 5.9 45 17-61 452-496 (658)
322 4gq4_A Menin; tumor suppressor 22.0 6.4E+02 0.022 25.7 13.8 97 352-468 247-355 (489)
323 4a5x_A MITD1, MIT domain-conta 21.9 1.3E+02 0.0046 22.8 4.8 20 395-414 25-44 (86)
324 3iqu_A 14-3-3 protein sigma; s 21.8 4.8E+02 0.017 24.2 14.1 45 48-92 8-53 (236)
325 3lxu_X Tripeptidyl-peptidase 2 21.7 5.2E+02 0.018 31.0 11.8 50 386-438 1284-1333(1354)
326 3bu8_A Telomeric repeat-bindin 21.3 2.7E+02 0.0094 25.4 7.3 37 430-466 122-158 (235)
327 3mv2_A Coatomer subunit alpha; 21.0 5.9E+02 0.02 24.9 13.2 28 17-44 117-144 (325)
328 3uzd_A 14-3-3 protein gamma; s 20.7 5.2E+02 0.018 24.1 16.4 44 49-92 5-49 (248)
329 3r9m_A BRO1 domain-containing 20.6 3.3E+02 0.011 27.4 9.0 48 457-504 115-162 (376)
330 2cwy_A Hypothetical protein TT 20.5 1.5E+02 0.0052 22.9 5.0 58 391-450 6-67 (94)
331 2vkj_A TM1634; membrane protei 20.3 2.3E+02 0.0079 21.5 5.5 31 422-452 53-83 (106)
332 2npm_A 14-3-3 domain containin 20.2 5.5E+02 0.019 24.2 17.0 30 232-261 29-58 (260)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-42 Score=374.22 Aligned_cols=384 Identities=20% Similarity=0.253 Sum_probs=370.9
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
.+.+|..++..|++++|+..|.+++..+|+++.++..+|.++...|++++|+.++..++..+|.++.+|..+|.++. .|
T Consensus 2 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHH
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 175 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 175 (760)
++++|+..|++++.+.|.. +.++..+|.++...|++++|+..|.+++.
T Consensus 82 ~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------- 129 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDF-----IDGYINLAAALVAAGDMEGAVQAYVSALQ--------------------------- 129 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHSCSSHHHHHHHHHHH---------------------------
T ss_pred CHHHHHHHHHHHHHcCcch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------
Confidence 9999999999999999986 89999999999999999999999999987
Q ss_pred hHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 176 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 255 (760)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 255 (760)
..|+...++..+|.++...|++++|+.+|.+++..+|.+..+|..+|.++...|++++|+.+|+
T Consensus 130 ----------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 130 ----------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp ----------------HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ----------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHH
Q 004339 256 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 335 (760)
Q Consensus 256 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 335 (760)
+++..+|+++.++..+|.++...|++++|+..|.+++...|. ++.++..+|.+ |... |+++.|+.+
T Consensus 194 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~------------g~~~~A~~~ 259 (388)
T 1w3b_A 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV-YYEQ------------GLIDLAIDT 259 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHH-HHHc------------CCHHHHHHH
Confidence 999999999999999999999999999999999999999987 88999999999 9998 999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 336 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 336 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
|++++..+|.++.++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+..|++++..
T Consensus 260 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998 88999999999999999999999999999996
Q ss_pred hcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 416 FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 416 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
.|.++.+++.+|.+|...|++++|+.+|++++.++|+++.+++++|.++..+
T Consensus 335 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 335 --FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 6778999999999999999999999999999999999999999999987654
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.3e-39 Score=350.41 Aligned_cols=364 Identities=18% Similarity=0.195 Sum_probs=350.7
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+.+..+|+++.+++.+|.+++..|++++|+.+++.++..+|.++.+|..+|.++...|++++|+.+|++++.++|+++.+
T Consensus 24 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 103 (388)
T 1w3b_A 24 QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
+..+|.++. .|+++.|+..|.+++.+.|.. ..++..+|.++...|++++|+.+|.+++.
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------- 163 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDL-----YCVRSDLGNLLKALGRLEEAKACYLKAIE--------------- 163 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC-----THHHHHHHHHHHTTSCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHH---------------
Confidence 999999998 899999999999999999986 78999999999999999999999999987
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
..|..+.++..+|.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus 164 ----------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 164 ----------------------------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215 (388)
T ss_dssp ----------------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred ----------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCch
Q 004339 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 323 (760)
Q Consensus 244 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~ 323 (760)
.|++++|+..|.+++..+|+++.++..+|.++...|++++|+..|.+++...|. .+.++..+|.+ |...
T Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~--------- 284 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANA-LKEK--------- 284 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHH-HHHH---------
T ss_pred cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHc---------
Confidence 999999999999999999999999999999999999999999999999999887 88899999999 9999
Q ss_pred HHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 004339 324 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 403 (760)
Q Consensus 324 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 403 (760)
|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|.+++...| .++.++.++|.+|...|+++
T Consensus 285 ---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 285 ---GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-----EFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp ---SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-----TCHHHHHHHHHHHHTTTCCH
T ss_pred ---CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999999999999999988 88999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
+|+..|++++.. .|..+.+++.+|.++..+|+
T Consensus 357 ~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 357 EALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 999999999996 77889999999999988774
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-37 Score=350.32 Aligned_cols=434 Identities=14% Similarity=0.049 Sum_probs=373.7
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
.++..|..++..+...|++++|+.+|.+++...|+. ..++.+|.+|...|++.+|+.+|.+++.. |.++.++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 456678899999999999999999999999999854 77889999999999999999999998765 6688999999999
Q ss_pred Hc-cCCHhHHHHHHHHHHHHHHhc--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhh
Q 004339 92 LI-SSDTGAALDAFKTARTLLKKA--------------GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 92 ~~-~~~~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
|. .|++++|+..|.+. .|.. +.+..+.+|+.+|.+|...|++++|+.+|.+++..+|.....
T Consensus 160 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHTTCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhhHHHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 98 88999999999863 2221 001137899999999999999999999999999987743222
Q ss_pred cccchhhhh---------------h----hhh----------HHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHH
Q 004339 157 DSKTKTYVI---------------D----ASA----------SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 207 (760)
Q Consensus 157 ~~~~~~~~~---------------~----~~~----------~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~ 207 (760)
........+ . ... .......+.+..++..+...+.. |.++.+++.+|.+|
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHH
Confidence 111100000 0 000 00001223333444444444444 67889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHH
Q 004339 208 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 287 (760)
Q Consensus 208 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 287 (760)
...|++++|+.+|.+++...|.+..++..++.++...|++++|+.++.+++...|.++.++..+|.+|...|++++|+.+
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004339 288 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 367 (760)
Q Consensus 288 ~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 367 (760)
|.+++...|. +..++..++.+ |... |++++|+.+|++++...|.+..+++.+|.+|...|++++|+
T Consensus 396 ~~~~~~~~~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 396 FSKSSTMDPQ-FGPAWIGFAHS-FAIE------------GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999998887 88899999999 9999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc----CCCc-HHHHHHHHHHHHHhccHHHHH
Q 004339 368 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY----YNTD-AQILLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 368 ~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~-~~~~~~la~~~~~~g~~~~A~ 442 (760)
.+|.+++...| .++.+|..+|.+|...|++++|+.+|++++...+ .|.+ ..++..+|.+|...|++++|+
T Consensus 462 ~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 462 EYLQSSYALFQ-----YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHCC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCC-----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999998 7899999999999999999999999999999753 3333 889999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 443 KSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 443 ~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.+|++++.+.|+++.+++.++.+|...|
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999988776
No 4
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-37 Score=341.15 Aligned_cols=399 Identities=14% Similarity=0.126 Sum_probs=361.1
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
.+.+++.+|..++..|+|++|+.+|++++..+| ++.+++.+|.++...|++++|+..|.+++.++|.++.+++.+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCC-------------------------------------------------------
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGE------------------------------------------------------- 116 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~------------------------------------------------------- 116 (760)
. .|++.+|+..|.+++...|....
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 8 88999999999999887762100
Q ss_pred -------------------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhc-----c--cchhhhhcccchhhhhhh
Q 004339 117 -------------------EVPIEVLNNIGVIHFE---KGEFESAHQSFKDALG-----D--GIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 117 -------------------~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~p~~~~~~~~~~~~~~~~ 167 (760)
+....+++.+|.+++. .|+++.|+.+|.+++. . .|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------------- 229 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED-------------- 229 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC--------------
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc--------------
Confidence 1126777888888886 8999999999999987 2 1100
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 247 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 247 (760)
....|..+.+++.+|.++...|++++|+.+|.+++...|. ..++..+|.++...|++
T Consensus 230 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 230 ----------------------EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDS 286 (514)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCC
T ss_pred ----------------------cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCH
Confidence 0013667889999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhh
Q 004339 248 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327 (760)
Q Consensus 248 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 327 (760)
++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++...|. +..++..+|.+ |... |
T Consensus 287 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~ 352 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACL-AYRE------------N 352 (514)
T ss_dssp TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHH-TTTT------------T
T ss_pred HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHH-HHHc------------C
Confidence 99999999999999999999999999999999999999999999999888 78899999999 8888 9
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHH---cCCHH
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFA---QGNFA 403 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~la~~~~~---~g~~~ 403 (760)
+++.|+.+|.+++...|.++.++..+|.++...|++++|+.+|.+++...|.... .....+++.+|.++.. .|+++
T Consensus 353 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 9999999999999999999999999999999999999999999999999983210 0114499999999999 99999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+|+..|++++.. .|.++.++..+|.+|...|++++|+.+|++++.++|+++.++..+..+
T Consensus 433 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 433 EATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 999999999996 677899999999999999999999999999999999999988877654
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-37 Score=348.92 Aligned_cols=421 Identities=14% Similarity=0.073 Sum_probs=315.4
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----------------
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID---------------- 78 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 78 (760)
..++.+|.+|...|++++|+.+|.+++.. |.++.++..+|.+|...|++++|+.+|.+.....
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI 196 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc
Confidence 44555666666666666666666655433 4455556666666666666666665555422111
Q ss_pred CCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH-------------------------------
Q 004339 79 PRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI------------------------------- 126 (760)
Q Consensus 79 p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l------------------------------- 126 (760)
|.++.+|..+|.+|. .|++++|+..|++++...|.. ..++..+
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC-----YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh-----hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 112555555565555 556666666666665555443 2222211
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 127 -------GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 127 -------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+.+|...|++++|+.+|.+++...+. ..... .........+.+..++..+...+...|.+..+
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~---------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 341 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS-SDLLL---------CKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGC-HHHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTT
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcCCch-HHHHH---------HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHH
Confidence 33444445555555555444432110 00000 00000011111112222222222255678889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
+..++.++...|++++|+.+|.+++...|.++.++..+|.+|...|++++|+.+|.+++...|.+..+|..++.+|...|
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
++++|+.+|.+++...|. +..++..+|.+ |... |++++|+.+|++++...|.++.++..+|.+|..
T Consensus 422 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQG-THLPYLFLGMQ-HMQL------------GNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487 (597)
T ss_dssp CHHHHHHHHHHHHHTTTT-CSHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-chHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999887 88999999999 9999 999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHhcC-CCCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 360 KGQFDVSKDLFTQVQEAASG-SVFVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p~-~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
.|++++|+.+|.+++...|. ...|.. +.+|..+|.+|...|++++|+..|++++.. .|.++.++..+|.+|...|+
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCC
Confidence 99999999999999999642 111243 789999999999999999999999999997 67789999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHhhHHHHHH
Q 004339 438 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 467 (760)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 467 (760)
+++|+.+|+++++++|+++.++..++.+|.
T Consensus 566 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 566 PGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999998763
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.9e-35 Score=332.15 Aligned_cols=423 Identities=14% Similarity=0.142 Sum_probs=334.3
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
.+..++.+|..++..|+|++|+.+|++++..+|+++.+++.+|.+|..+|++++|+..|++++.++|+++.+++.+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhh-----------------
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT----------------- 154 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------- 154 (760)
. .|++.+|+..|+ ++.+.|... ..+ ...+...+....|+..+..++...|...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~-----~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFD-----GAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCC-----hHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 8 899999999995 777766642 111 1122222333444444444443211000
Q ss_pred -----------hhcccch-------hhhh-hhhhHHHHHHhHHhhhhhhccCCCccCCcch-------HHHHHHHHHHHH
Q 004339 155 -----------LLDSKTK-------TYVI-DASASMLQFKDMQLFHRFENDGNHVELPWNK-------VTVLFNLARLLE 208 (760)
Q Consensus 155 -----------~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~-------~~~~~~la~~~~ 208 (760)
....... ...+ .............+..++..+...+...|.+ ..+++.+|.++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 0000000 0000 0000000001112222222222233345554 346888999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 004339 209 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 288 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 288 (760)
..|++++|+.+|.+++..+|. ..++..+|.++...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004339 289 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKD 368 (760)
Q Consensus 289 ~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 368 (760)
.+++...|. ...++..+|.+ |... |+++.|+.+|.+++..+|.++.++..+|.++...|++++|+.
T Consensus 334 ~~a~~~~~~-~~~~~~~la~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 334 QKAQSLNPE-NVYPYIQLACL-LYKQ------------GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HHHHHHCTT-CSHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999888 78899999999 9988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCC-CchHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 369 LFTQVQEAASGSVFV-QMPDVWINLAHVYFAQ----------GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 369 ~~~~al~~~p~~~~~-~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
+|.+++...|..... .....++.+|.++... |++++|+.+|++++.. .|.++.+++.+|.+|...|+
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcc
Confidence 999999999833211 2345578889999999 9999999999999997 67889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHhh
Q 004339 438 WQDCKKSLLRAIHLAPSNYTLRFD 461 (760)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~ 461 (760)
+++|+.+|++++.+.|.++.....
T Consensus 478 ~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 478 IDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999998776543
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=5.1e-34 Score=320.59 Aligned_cols=398 Identities=16% Similarity=0.152 Sum_probs=327.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004339 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125 (760)
Q Consensus 47 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 125 (760)
.+..++.+|.+++..|++++|+.+|++++..+|+++.++..+|.++. .|++..|+..|.+++.+.|.+ +.+++.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~ 98 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH-----SKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-----HHHHHH
Confidence 46889999999999999999999999999999999999999999998 899999999999999999987 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh--hhhhhhHHH-----------------------HHHhHHhh
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY--VIDASASML-----------------------QFKDMQLF 180 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--~~~~~~~~~-----------------------~~~~~~~~ 180 (760)
+|.+|...|++++|+..|. ++...|............ ........+ .+......
T Consensus 99 la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999999996 777665432221110000 000000000 00000111
Q ss_pred hhhhccCCCccCCcchHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHHcCCcHH-------HHHHHHHHHHHcC
Q 004339 181 HRFENDGNHVELPWNKVTVLFNLARLL--------EQIHDTVAASVLYRLILFKYQDYVD-------AYLRLAAIAKARN 245 (760)
Q Consensus 181 ~~l~~~~~~~~~~p~~~~~~~~la~~~--------~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g 245 (760)
..+..+.......+........++.++ ...|++.+|+.+|.+++..+|.+.. ++..+|.++...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 122233333444444444444444443 3346899999999999999999865 5778888999999
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHH
Q 004339 246 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 325 (760)
Q Consensus 246 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~ 325 (760)
++++|+.+|.+++..+|. +.++..+|.++...|++..|+.+|.+++...|. .+.++..+|.+ |...
T Consensus 258 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~----------- 323 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQM-YFIL----------- 323 (537)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT-----------
T ss_pred cHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHH-HHhc-----------
Confidence 999999999999999999 999999999999999999999999999999987 88999999999 9988
Q ss_pred hhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH
Q 004339 326 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405 (760)
Q Consensus 326 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 405 (760)
|+++.|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|
T Consensus 324 -~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 324 -QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-----TLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp -TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCTHHHHHHHHHHHHTTCHHHH
T ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998 7899999999999999999999
Q ss_pred HHHHHHHHhhhcCCCc----HHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 406 MKMYQNCLRKFYYNTD----AQILLYLARTHYEA----------EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 406 ~~~~~~al~~~~~~~~----~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+..|++++...+.... ...++.+|.+|... |++++|+.+|++++.++|+++.+++++|.++...|
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 9999999998644333 44577889999999 99999999999999999999999999999988776
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-34 Score=319.18 Aligned_cols=398 Identities=13% Similarity=0.059 Sum_probs=339.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004339 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125 (760)
Q Consensus 47 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 125 (760)
.+.+++.+|.+++..|++.+|+.+|++++..+| ++.++..+|.++. .|++..|+..|.+++.+.|.+ +.+++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~ 78 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY-----SKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC-----HHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH-----HHHHHH
Confidence 367899999999999999999999999999999 6999999999999 899999999999999999886 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHh-----------------------------
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD----------------------------- 176 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 176 (760)
+|.+|...|++++|+..|.+++..+|.........................
T Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 79 RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 999999999999999999999998763221111000000000000000000
Q ss_pred ---HHhhhhhhccCCC----ccCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----H--c-------CCcHH
Q 004339 177 ---MQLFHRFENDGNH----VELPWNKVTVLFNLARLLEQ---IHDTVAASVLYRLILF-----K--Y-------QDYVD 232 (760)
Q Consensus 177 ---~~~~~~l~~~~~~----~~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~-----~--~-------p~~~~ 232 (760)
......+..+... .-..|.++.+++.+|.++.. .|++++|+.+|.+++. . . |..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 0000000000000 01236678899999999887 8999999999999998 5 3 55678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHH
Q 004339 233 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 312 (760)
Q Consensus 233 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~ 312 (760)
+++.+|.++...|++++|+.+|.+++...|. +.++..+|.++...|++.+|+.+|.+++...|. ...++..+|.+ |.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQM-NF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHH-HH
Confidence 8999999999999999999999999999999 999999999999999999999999999999887 78899999999 99
Q ss_pred HHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 004339 313 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 392 (760)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~l 392 (760)
.. |+++.|+.+|.+++...|.++.++..+|.++...|++++|+.+|.+++...| .++.++..+
T Consensus 316 ~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l 378 (514)
T 2gw1_A 316 IL------------QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-----EAPEVPNFF 378 (514)
T ss_dssp HT------------TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-----TCSHHHHHH
T ss_pred Hh------------CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-----cCHHHHHHH
Confidence 88 9999999999999999999999999999999999999999999999999998 789999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 393 AHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYE---AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
|.++...|++++|+.+|++++...+.... ..+++.+|.++.. .|++++|+.+|++++.+.|+++.+++.+|.+
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 99999999999999999999998655443 5599999999999 9999999999999999999999999999999
Q ss_pred HHHHH
Q 004339 466 MQKFS 470 (760)
Q Consensus 466 ~~~~~ 470 (760)
+...+
T Consensus 459 ~~~~g 463 (514)
T 2gw1_A 459 KLQQE 463 (514)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 87776
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.2e-34 Score=313.72 Aligned_cols=326 Identities=14% Similarity=0.154 Sum_probs=236.1
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
.+.+..+|.++..++.+|..++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|.+++..+|.++.
T Consensus 16 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 95 (450)
T 2y4t_A 16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95 (450)
T ss_dssp -------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHh
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPI---EVLNNI------------GVIHFEKGEFESAHQSFKDAL 147 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al 147 (760)
++..+|.+|. .|++++|+.+|.+++.+.|.. . .++..+ |.++...|++++|+.+|.+++
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE-----NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988 789999999999999887764 4 454444 555777777777777777776
Q ss_pred cccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 148 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 227 (760)
Q Consensus 148 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 227 (760)
. ..|.++.+++.+|.+|...|++++|+.+|.+++..+
T Consensus 171 ~-------------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 171 E-------------------------------------------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp H-------------------------------------------HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred H-------------------------------------------hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5 345566777777777777777777777777777777
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH------------HHHHhhcCCHHHHHHHHHHhhhcC
Q 004339 228 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML------------GDLELKNDDWVKAKETFRAASDAT 295 (760)
Q Consensus 228 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~ 295 (760)
|.++.++..+|.++...|++++|+.+|.+++...|+++.++..+ |.++...|++.+|+.+|.+++...
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777777766555 556666666666666666666655
Q ss_pred CCCC---hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004339 296 DGKD---SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 372 (760)
Q Consensus 296 ~~~~---~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 372 (760)
|... ...+..+|.+ +... |++++|+.+|++++..+|+++.++..+|.++...|++++|+.+|++
T Consensus 288 p~~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHC-FSKD------------EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp CSSHHHHHHHHHHHHHH-HHTT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5411 2244555555 5555 6666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCCCCCchHHHHHHHHH
Q 004339 373 VQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 373 al~~~p~~~~~~~~~~~~~la~~ 395 (760)
++++.| .++.++..++.+
T Consensus 355 al~~~p-----~~~~~~~~l~~~ 372 (450)
T 2y4t_A 355 AQEHNE-----NDQQIREGLEKA 372 (450)
T ss_dssp HHTTSS-----SCHHHHHHHHHH
T ss_pred HHHhCc-----chHHHHHHHHHH
Confidence 666655 555555555543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.2e-33 Score=310.01 Aligned_cols=370 Identities=15% Similarity=0.092 Sum_probs=309.2
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHH
Q 004339 29 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTA 107 (760)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~a 107 (760)
....+...|..++..+|.++.+++.+|.++...|++.+|+.+|.+++..+|.++.+++.+|.++. .|++..|+..|.++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999999999999999999999999998 88999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhh---hhcccchhhhhhhhhHHHHHHhHHhhhhhh
Q 004339 108 RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT---LLDSKTKTYVIDASASMLQFKDMQLFHRFE 184 (760)
Q Consensus 108 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 184 (760)
+.+.|.. +.+++.+|.+|...|++++|+.+|.+++...|... .......
T Consensus 87 l~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~----------------------- 138 (450)
T 2y4t_A 87 IQLKMDF-----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI----------------------- 138 (450)
T ss_dssp HHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH-----------------------
T ss_pred HhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH-----------------------
Confidence 9999886 89999999999999999999999999998554221 0000000
Q ss_pred ccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 004339 185 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 264 (760)
Q Consensus 185 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 264 (760)
.......++.+|.++...|++++|+.+|.+++...|.++.++..+|.++...|++++|+.+|.+++..+|.+
T Consensus 139 --------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 210 (450)
T 2y4t_A 139 --------KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210 (450)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC
T ss_pred --------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 001122355668889999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHH------------HHHHHHHHHhhhhcCchHHhhcHHHH
Q 004339 265 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL------------GNWNYFAALRNEKRAPKLEATHLEKA 332 (760)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~l------------g~~~y~~~~~~~~~~~~~~~~~~~~A 332 (760)
+.++..+|.+|...|++++|+.+|.+++...|. ....+..+ |.+ +... |++++|
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------g~~~~A 276 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEE-LIRD------------GRYTDA 276 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH-HHHH------------TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHH-HHHc------------CCHHHH
Confidence 999999999999999999999999999999887 66665554 777 7777 999999
Q ss_pred HHHHHHHHhhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLY----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
+.+|.+++...|.++. ++..+|.++...|++++|+.+|.+++...| .++.+|..+|.++...|++++|+..
T Consensus 277 ~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 277 TSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-----DNVNALKDRAEAYLIEEMYDEAIQD 351 (450)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999854 788899999999999999999999999998 7899999999999999999999999
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHH------------hc-----cHHHHHHHHHH-HHHhCCCC
Q 004339 409 YQNCLRKFYYNTDAQILLYLARTHYE------------AE-----QWQDCKKSLLR-AIHLAPSN 455 (760)
Q Consensus 409 ~~~al~~~~~~~~~~~~~~la~~~~~------------~g-----~~~~A~~~~~~-al~~~p~~ 455 (760)
|++++.. .|.++.++..++.+... +| ...++...|++ ++...|++
T Consensus 352 ~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 352 YETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 9999996 67788899999866444 33 44556777775 67777765
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.5e-31 Score=283.27 Aligned_cols=345 Identities=15% Similarity=0.092 Sum_probs=277.6
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
++..++.+|.+++..|+|++|+.+|++++..+|.++.+++.+|.++...|++++|+..|.+++.++|.++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888888888888888888888888777777777776
Q ss_pred c-cCCHhHHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhh
Q 004339 93 I-SSDTGAALDAFKTARTLLK---KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 168 (760)
. .|+++.|+..|.+++.+.| .. ..++..++.++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~------------------------------------- 119 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEE-----KEAESQLVKADE------------------------------------- 119 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHH-----HHHHHHHHHHHH-------------------------------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccCh-----HHHHHHHHHHHH-------------------------------------
Confidence 6 6677777777777776666 44 455544444321
Q ss_pred hHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHH
Q 004339 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 248 (760)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 248 (760)
...++.+|.++...|++++|+.+|.+++...|.++.++..+|.++...|+++
T Consensus 120 ----------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3ieg_A 120 ----------------------------MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171 (359)
T ss_dssp ----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHH
Confidence 1234556778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 249 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 249 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
+|+.++.+++...|.++.++..+|.++...|++++|+..|.+++...|. ...++..+..+ .
T Consensus 172 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~-----------------~- 232 (359)
T 3ieg_A 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV-----------------K- 232 (359)
T ss_dssp HHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-----------------H-
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH-----------------H-
Confidence 8888888888888888888888888888888888888888888887776 44443333222 1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCch----HHHHHHHHHHHHcCCHHH
Q 004339 329 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP----DVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 329 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----~~~~~la~~~~~~g~~~~ 404 (760)
.......+|.++...|++++|+.+|.+++...| .++ .++..+|.++...|++++
T Consensus 233 -----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 233 -----------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP-----SVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp -----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----SSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CchHHHHHHHHHHHHHHHHccCHHH
Confidence 123445678999999999999999999999998 544 457789999999999999
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 405 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 405 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
|+.+|++++.. .|.++.+++.+|.+|...|++++|+.+|++++.++|+++.++..++.++..+.
T Consensus 291 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 291 AIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999996 67789999999999999999999999999999999999999999998866554
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=5.2e-32 Score=286.84 Aligned_cols=321 Identities=15% Similarity=0.172 Sum_probs=278.7
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---Cc
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP---RD 81 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~ 81 (760)
+++..+|.++.+++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|++++..+| .+
T Consensus 28 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 107 (359)
T 3ieg_A 28 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH
T ss_pred HHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 82 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 82 ~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
+.++..++.++. ...+..+|.++...|++++|+.+|.+++.
T Consensus 108 ~~~~~~l~~~~~--------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------- 148 (359)
T 3ieg_A 108 KEAESQLVKADE--------------------------MQRLRSQALDAFDGADYTAAITFLDKILE------------- 148 (359)
T ss_dssp HHHHHHHHHHHH--------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHH--------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH-------------
Confidence 888888876642 35567789999999999999999999987
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 241 (760)
..|.++.++..+|.++...|++++|+..|.+++...|.++.++..+|.++
T Consensus 149 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 149 ------------------------------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp ------------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred ------------------------------hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcC
Q 004339 242 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA 321 (760)
Q Consensus 242 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~ 321 (760)
...|++++|+.+|.+++...|.++.++..+..+. .......+|.+ +...
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~a~~-~~~~------- 247 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-----------------------KLNKLIESAEE-LIRD------- 247 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------------------HHHHHHHHHHH-HHHT-------
T ss_pred HHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH-----------------------HHHHHHHHHHH-HHHc-------
Confidence 9999999999999999999999998766554432 12233445666 6666
Q ss_pred chHHhhcHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 004339 322 PKLEATHLEKAKELYTRVIVQHTSNLY----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 397 (760)
Q Consensus 322 ~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~ 397 (760)
|++++|+.+|.+++...|.++. ++..+|.++...|++++|+.+|.+++...| .++.+++.+|.++.
T Consensus 248 -----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 248 -----GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-----DNVNALKDRAEAYL 317 (359)
T ss_dssp -----TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHH
Confidence 8888888888888888888764 455688888888888888888888888887 77888888888888
Q ss_pred HcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 398 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
..|++++|+..|++++.. .|.++.++..++.++..+++
T Consensus 318 ~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHH
Confidence 888888888888888886 67778888888877766554
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.6e-32 Score=297.77 Aligned_cols=372 Identities=15% Similarity=0.060 Sum_probs=244.3
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEI---------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID----- 78 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 78 (760)
.+..|..+|.++...|++++|+.+|++++.+ +|....+|.++|.+|..+|++++|+.+|++++.+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3555677888888888888888888888775 56667788888888888888888888888887652
Q ss_pred ---CCcHHHHHHHHHHHc---cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcc
Q 004339 79 ---PRDAQAFIDLGELLI---SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE---KGEFESAHQSFKDALGD 149 (760)
Q Consensus 79 ---p~~~~~~~~la~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 149 (760)
+..+.++..+|.++. .++|++|+.+|++++.+.|++ +.++..+|.+++. .+++.+|+..|++++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-----~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~- 203 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-----PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR- 203 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-
Confidence 345667777776554 346888888888888888876 7777777777544 4666778888888876
Q ss_pred cchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 004339 150 GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILF 225 (760)
Q Consensus 150 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~ 225 (760)
.+|.++.++..+|..+.. .+++++|+.+|++++.
T Consensus 204 ------------------------------------------l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~ 241 (472)
T 4g1t_A 204 ------------------------------------------LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE 241 (472)
T ss_dssp ------------------------------------------HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred ------------------------------------------cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 456667777777765554 3567788888888888
Q ss_pred HcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc-------------------CCHHHHHH
Q 004339 226 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN-------------------DDWVKAKE 286 (760)
Q Consensus 226 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~ 286 (760)
.+|....++..+|.+|...|++++|+..|.+++..+|+++.++..+|.+|... +.+..|+.
T Consensus 242 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 321 (472)
T 4g1t_A 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA 321 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHH
T ss_pred hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 88888888888888888888888888888888888888888888888777543 23456666
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH---HHHHHHHHH-HHcCC
Q 004339 287 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY---AANGAGVVL-AEKGQ 362 (760)
Q Consensus 287 ~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~-~~~g~ 362 (760)
+|.+++...|. ...++..+|.+ |... |++++|+.+|++++...|.+.. ++..+|.++ ...|+
T Consensus 322 ~~~~a~~~~~~-~~~~~~~lg~~-~~~~------------~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (472)
T 4g1t_A 322 HLKKADEANDN-LFRVCSILASL-HALA------------DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC 387 (472)
T ss_dssp HHHHHHHHCTT-TCCCHHHHHHH-HHHT------------TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhcCCc-hhhhhhhHHHH-HHHh------------ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC
Confidence 66666666655 55556666666 6666 6666666666666666665433 234444433 35566
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHH
Q 004339 363 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 363 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 442 (760)
+++|+..|.+++.+.| ....... ....+..++.+++.. +|.++.++..||.+|...|++++|+
T Consensus 388 ~~~Ai~~y~kal~i~~-----~~~~~~~----------~~~~l~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 388 EDKAIHHFIEGVKINQ-----KSREKEK----------MKDKLQKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HHHHHHHHHHHHHSCC-----CCHHHHH----------HHHHHHHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhcCc-----ccHHHHH----------HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665 3322111 122334455555554 6777889999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHhhHH
Q 004339 443 KSLLRAIHLAPSNYTLRFDAG 463 (760)
Q Consensus 443 ~~~~~al~~~p~~~~~~~~la 463 (760)
.+|++|+++.|.+|.+...+|
T Consensus 451 ~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 451 EDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp ---------------------
T ss_pred HHHHHHHhcCCCCCcHhhcCC
Confidence 999999999998888877665
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.2e-30 Score=283.79 Aligned_cols=401 Identities=13% Similarity=0.042 Sum_probs=314.0
Q ss_pred CCHHHHHHHHHHHHHH----CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHH
Q 004339 28 GDFRSALTNFEKVLEI----YP--DNCETLKALGHIYVQLGQIEKAQELLRKAAKI---------DPRDAQAFIDLGELL 92 (760)
Q Consensus 28 g~~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~ 92 (760)
+.++.++..++..+.. .+ ..+.++..||.++..+|++++|+.+|++++.+ +|....+|.++|.+|
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 4455556666555532 22 23567889999999999999999999999876 577788999999999
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEE---VPIEVLNNIGVIHFEK--GEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
. .|++.+|+.+|++++.+.+..... ..+.++..+|.++... ++|++|+.+|++++.
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~------------------ 166 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE------------------ 166 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH------------------
T ss_pred HHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH------------------
Confidence 8 899999999999999998876432 3578888888877665 579999999999998
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ---IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
.+|+++.++..++.++.. .+++.+|+..|.+++.++|.+..++..+|..+..
T Consensus 167 -------------------------~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 167 -------------------------KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221 (472)
T ss_dssp -------------------------HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred -------------------------hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 567888888888888654 5778899999999999999999999988877654
Q ss_pred ----cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 004339 244 ----RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 319 (760)
Q Consensus 244 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~ 319 (760)
.+++++|+.+|++++..+|.++.++..+|.+|...|++.+|+..|.+++...|. .+.++..+|.+ |........
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~-y~~~~~~~~ 299 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCC-YRAKVFQVM 299 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH-HHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHH-HHHHHHHhh
Confidence 467889999999999999999999999999999999999999999999999998 89999999998 765433221
Q ss_pred cC-------chHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 004339 320 RA-------PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 392 (760)
Q Consensus 320 ~~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~l 392 (760)
.. .....+.++.|+..|.+++..+|.+..++..+|.++...|++++|+.+|++++.+.|... ....+++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~--~~~~~~~~~ 377 (472)
T 4g1t_A 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV--AKQLLHLRY 377 (472)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh--HHHHHHHHH
Confidence 11 112336688999999999999999999999999999999999999999999999887210 112356677
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHH
Q 004339 393 AHV-YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 471 (760)
Q Consensus 393 a~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 471 (760)
|.+ +...|++++|+..|.+++.. .|.... ..+....+..++.+++..+|.++.+++++|.+|...|
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~----------~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g- 444 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGVKI--NQKSRE----------KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE- 444 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHS--CCCCHH----------HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CcccHH----------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Confidence 765 45789999999999999997 444432 2233445677889999999999999999999998887
Q ss_pred hHHhhhhcCHHHHHHHHHHHHHHHHHHH
Q 004339 472 STLQKTRRTADEVRSTVAELENAVRVFS 499 (760)
Q Consensus 472 ~~l~~~~~~l~~~~~a~~~l~~A~~~~~ 499 (760)
++..|+..|+.|+++-.
T Consensus 445 -----------~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 445 -----------KMQQADEDSERGLESGS 461 (472)
T ss_dssp -----------HCC--------------
T ss_pred -----------CHHHHHHHHHHHHhcCC
Confidence 66777777777776433
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=265.26 Aligned_cols=289 Identities=14% Similarity=0.098 Sum_probs=194.6
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
+...|.++..++.+|..++..|+|++|+.+|++++..+|.+..++..++.++...|++++|+.+|.+++..+|.++.+++
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 94 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF 94 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence 44556677778888888888888888888888888888888888888888888888888888888888888887777777
Q ss_pred HHHHHHc-cC-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 87 DLGELLI-SS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 87 ~la~~~~-~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
.+|.++. .| +++.|+.+|.+++.+.|.. +.++..+|.++...|++++|+.+|.+++.
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---------------- 153 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTY-----GPAWIAYGHSFAVESEHDQAMAAYFTAAQ---------------- 153 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-----THHHHHHHHHHHHHTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------
Confidence 7777766 66 6777777777777766664 56677777777777777777777777665
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 244 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 244 (760)
..|....+++.+|.++...|++++|+.+|.+++...|.++.++..+|.++...
T Consensus 154 ---------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 206 (330)
T 3hym_B 154 ---------------------------LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206 (330)
T ss_dssp ---------------------------HTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred ---------------------------hccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 33445556666777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHHc---------CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHH
Q 004339 245 NNLQLSIELVNEALKVN---------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 315 (760)
Q Consensus 245 g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~ 315 (760)
|++++|+.++.+++... |..+.++..+|.++...|++++|+.+|.+++...|. ...++..+|.+ |...
T Consensus 207 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~-~~~~- 283 (330)
T 3hym_B 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYI-HSLM- 283 (330)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHH-HHHH-
T ss_pred ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHH-HHHh-
Confidence 77777777777766665 444455555555555555555555555555555554 45555555555 5555
Q ss_pred hhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 316 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 316 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
|++++|+.+|++++.++|+++.++..+|.++
T Consensus 284 -----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 284 -----------GNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp -----------TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 5555555555555555555555555555555
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.5e-29 Score=261.83 Aligned_cols=289 Identities=12% Similarity=0.123 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+.++..+|..++..|++++|+.+|.+++. ..|.++.+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-------------------------------------------~~p~~~~~ 58 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVME-------------------------------------------KDPFHASC 58 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCTTCTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------------------cCCCChhh
Confidence 57788999999999999999999999987 45677788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
+..++.++...|++++|+.+|.+++..+|.++.+++.+|.++...| ++++|+.+|.+++..+|.++.++..+|.++...
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE 138 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence 8889999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004339 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (760)
|++++|+.+|.+++...|. ...++..+|.+ |... |+++.|+.+|++++..+|.++.++..+|.++.
T Consensus 139 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 139 SEHDQAMAAYFTAAQLMKG-CHLPMLYIGLE-YGLT------------NNSKLAERFFSQALSIAPEDPFVMHEVGVVAF 204 (330)
T ss_dssp TCHHHHHHHHHHHHHHTTT-CSHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccc-cHHHHHHHHHH-HHHH------------hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999887 77888889999 8888 99999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHhcCCC----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSV----FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 434 (760)
..|++++|+.+|.+++...|... .+..+.++..+|.++...|++++|+.+|++++.. .|.++.++..+|.+|..
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSL 282 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHH
Confidence 99999999999999999975221 1356789999999999999999999999999997 67789999999999999
Q ss_pred hccHHHHHHHHHHHHHhCCCChhHHhhHHHHHH
Q 004339 435 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 467 (760)
Q Consensus 435 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 467 (760)
+|++++|+.+|++++.++|+++.++..++.++.
T Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999874
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=6.5e-27 Score=259.28 Aligned_cols=374 Identities=16% Similarity=0.110 Sum_probs=330.9
Q ss_pred CCCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCc
Q 004339 10 PHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRD 81 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 81 (760)
.+.++.+++.+|.+|+. .+++.+|+.+|++++.. .++.+++.||.+|.. .+++.+|+.+|++++.. .+
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~ 110 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GL 110 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC
Confidence 45678899999999999 99999999999999875 689999999999999 99999999999999875 58
Q ss_pred HHHHHHHHHHHcc-----CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccch
Q 004339 82 AQAFIDLGELLIS-----SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIW 152 (760)
Q Consensus 82 ~~~~~~la~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 152 (760)
+.+++.||.+|.. +++..|+.+|+++.... .+.+++.+|.+|.. .+++++|+.+|++++..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--- 180 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--- 180 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---
Confidence 8999999999874 48999999999997752 37899999999998 89999999999999762
Q ss_pred hhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcC
Q 004339 153 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQ 228 (760)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p 228 (760)
.++.+++.+|.+|.. .+++++|+.+|.+++..
T Consensus 181 ------------------------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 216 (490)
T 2xm6_A 181 ------------------------------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-- 216 (490)
T ss_dssp ------------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred ------------------------------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--
Confidence 367899999999998 89999999999999874
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh----cCCHHHHHHHHHHhhhcCCCCCh
Q 004339 229 DYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDDWVKAKETFRAASDATDGKDS 300 (760)
Q Consensus 229 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 300 (760)
.++.+++.+|.+|.. .+++++|+.+|.+++.. .++.+++.+|.+|.. .+++.+|+.+|++++... ++
T Consensus 217 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~ 291 (490)
T 2xm6_A 217 GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NS 291 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CH
Confidence 578899999999997 89999999999999875 678899999999998 899999999999998763 67
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHh
Q 004339 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG---QFDVSKDLFTQVQEAA 377 (760)
Q Consensus 301 ~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 377 (760)
.+++.+|.+ |...... ..+++++|+.+|.+++.. .++.+++.+|.+|...| ++++|+.+|+++++.
T Consensus 292 ~a~~~Lg~~-y~~~~~g-------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 292 DGQYYLAHL-YDKGAEG-------VAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK- 360 (490)
T ss_dssp HHHHHHHHH-HHHCBTT-------BCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHH-HHcCCCC-------CcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-
Confidence 888999988 6642110 016899999999999986 56889999999999877 899999999999986
Q ss_pred cCCCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHH
Q 004339 378 SGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAI 449 (760)
Q Consensus 378 p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 449 (760)
.++.+++++|.+|.. .+++++|+.+|++++.. .++.+++.||.+|.. .+++.+|+.+|++|+
T Consensus 361 ------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 361 ------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp ------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 358999999999999 89999999999999984 468999999999999 899999999999999
Q ss_pred HhCCC---ChhHHhhHHHHHH
Q 004339 450 HLAPS---NYTLRFDAGVAMQ 467 (760)
Q Consensus 450 ~~~p~---~~~~~~~la~~~~ 467 (760)
...|+ ++.+.++++.++.
T Consensus 431 ~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 431 TNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHCCHHHHHHHHHHHTTSCH
T ss_pred HCCCCCcCCHHHHHHHHhcCH
Confidence 99954 8888888877643
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=3.3e-27 Score=264.41 Aligned_cols=428 Identities=8% Similarity=0.038 Sum_probs=333.4
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
++|..+|.++.+|+.++.. ...|+++.|..+|++++..+|.++.+|..+|.++...|+++.|+.+|++++...| ++..
T Consensus 4 ~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~l 81 (530)
T 2ooe_A 4 KKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDL 81 (530)
T ss_dssp HHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHH
T ss_pred hHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHH
Confidence 5678899999999999984 7899999999999999999999999999999999999999999999999999999 6788
Q ss_pred HHHHHHHHc--cCCHhHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhcc
Q 004339 85 FIDLGELLI--SSDTGAALD----AFKTARTLLKKAGEEVPIEVLNNIGVIHFE---------KGEFESAHQSFKDALGD 149 (760)
Q Consensus 85 ~~~la~~~~--~~~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~ 149 (760)
|..++.... .|++..|.. .|++++...+.+ +....+|..++.+... .|+++.|+.+|.+++..
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGME--IMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTS--TTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCC--cccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 998886443 567777665 777777654322 1237888888887765 78999999999999984
Q ss_pred cchhhhhcccchhhhhhh------hhHHHHHHhHHhhhhh----------hccCCCcc-CCcch-------HHHHHHHHH
Q 004339 150 GIWLTLLDSKTKTYVIDA------SASMLQFKDMQLFHRF----------ENDGNHVE-LPWNK-------VTVLFNLAR 205 (760)
Q Consensus 150 ~p~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l----------~~~~~~~~-~~p~~-------~~~~~~la~ 205 (760)
|.............+.. ....+......+..+. ..+...+. ..|.. ..+|.....
T Consensus 160 -P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 160 -PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp -CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 43211100000000000 0000000001111111 12222221 23321 234444433
Q ss_pred HHHHc----CCH----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HcC
Q 004339 206 LLEQI----HDT----VAASVLYRLILFKYQDYVDAYLRLAAIAKA-------RNNLQ-------LSIELVNEALK-VNG 262 (760)
Q Consensus 206 ~~~~~----g~~----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p 262 (760)
..... ++. ..++..|++++..+|.++.+|+.+|.++.. .|+++ +|+.+|++++. ..|
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 32221 232 478899999999999999999999999986 79977 99999999997 799
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 263 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 263 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
++..+|..++.++...|+++.|..+|.+++...|.....+|..++.+ +... |+++.|+.+|.+++..
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKARED 385 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998876224689999998 8888 9999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-
Q 004339 343 HTSNLYAANGAGVV-LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT- 420 (760)
Q Consensus 343 ~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~- 420 (760)
.|.+...+...+.+ +...|+++.|+.+|+++++..| +++.+|..++.++...|+++.|..+|++++...+.++
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-----~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 99888877777766 3468999999999999999999 8899999999999999999999999999999744332
Q ss_pred -cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 421 -DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 421 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
...+|...+......|+.+.+..++.++++..|++
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 25588888888889999999999999999999954
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=2.9e-29 Score=267.11 Aligned_cols=237 Identities=17% Similarity=0.141 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHH------
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS------ 269 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------ 269 (760)
++.+++.+|.++...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++...|.+..++.
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 176 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444444444444444444444444444444443333222
Q ss_pred ----------HHHHHHhhcCCHHHHHHHHHHhhhcCCCC-ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHH
Q 004339 270 ----------MLGDLELKNDDWVKAKETFRAASDATDGK-DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 338 (760)
Q Consensus 270 ----------~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 338 (760)
.++.++ ..|++.+|+.+|.+++...|.. .+.++..+|.+ |... |+++.|+.+|++
T Consensus 177 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~ 242 (368)
T 1fch_A 177 GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL-FNLS------------GEYDKAVDCFTA 242 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH-HHHT------------TCHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH-HHHc------------CCHHHHHHHHHH
Confidence 233333 5555555555555555555442 34555555555 5555 555555555555
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004339 339 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 339 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 418 (760)
++..+|.++.+++.+|.++...|++++|+.+|.+++.+.| .++.+++.+|.+|..+|++++|+.+|++++...+.
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-----GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 5555555555555555555555555555555555555555 45555555555555555555555555555555443
Q ss_pred CC---------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 419 NT---------DAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 419 ~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
.. .+.++..+|.+|..+|++++|..++.+++..
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 31 1455556666666666666665555555443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=2.2e-28 Score=260.41 Aligned_cols=297 Identities=14% Similarity=0.108 Sum_probs=253.7
Q ss_pred HHHHcCCHHHHHH-HHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCc-chHHHHHHHHHH
Q 004339 129 IHFEKGEFESAHQ-SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW-NKVTVLFNLARL 206 (760)
Q Consensus 129 ~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~~~~~~~~la~~ 206 (760)
++...|+|++|+. .|.+++...| .+| .....++.+|.+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~----------------------------------------~~~~~~~~~~~~~~~~ 73 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEE----------------------------------------ENPLRDHPQPFEEGLR 73 (368)
T ss_dssp ------------CHHHHCCCCCCS----------------------------------------SCTTTTCSSHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCC----------------------------------------CCcccchHHHHHHHHH
Confidence 5666789999999 9988876432 122 235678999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 286 (760)
+...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++..+|.++.++..+|.++...|++.+|+.
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE 153 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHH----------------HHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC--CHH
Q 004339 287 TFRAASDATDGKDSYATL----------------SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLY 348 (760)
Q Consensus 287 ~~~~al~~~~~~~~~~~~----------------~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~ 348 (760)
+|.+++...|. ....+. .++.+ + .. |+++.|+.+|.+++..+|. ++.
T Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~------------~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 154 ILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL-L-SD------------SLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HHHHHHHTSTT-TGGGCC---------------CTTHHH-H-HH------------HHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH-h-hc------------ccHHHHHHHHHHHHHhCcCcccHH
Confidence 99999998876 333332 35555 4 66 9999999999999999999 899
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 428 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l 428 (760)
++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+..|++++.. .|.++.+++.+
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l 291 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNL 291 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 999999999999999999999999999998 78999999999999999999999999999997 67889999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCC-----------hhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHH
Q 004339 429 ARTHYEAEQWQDCKKSLLRAIHLAPSN-----------YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRV 497 (760)
Q Consensus 429 a~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~ 497 (760)
|.+|...|++++|+.+|++++.+.|++ ..+|.+++.++..+| +...+...+..++..
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG------------QSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT------------CGGGHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC------------ChHhHHHhHHHHHHH
Confidence 999999999999999999999999988 899999999998887 334444444555555
Q ss_pred HH
Q 004339 498 FS 499 (760)
Q Consensus 498 ~~ 499 (760)
|.
T Consensus 360 ~~ 361 (368)
T 1fch_A 360 LL 361 (368)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=3.3e-25 Score=245.55 Aligned_cols=350 Identities=17% Similarity=0.148 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcc-----CCHhHHHH
Q 004339 32 SALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-----SDTGAALD 102 (760)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~A~~ 102 (760)
.++..+.++.. +.++.+++.+|.+|.. .+++.+|+.+|++++.. .++.+++.||.+|.. +++..|+.
T Consensus 25 ~~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34666666654 6789999999999999 89999999999999986 678999999999874 58999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHH
Q 004339 103 AFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 178 (760)
Q Consensus 103 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (760)
+|.++.... .+.+++.||.+|.. .+++++|+.+|+++...
T Consensus 101 ~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------------------------- 144 (490)
T 2xm6_A 101 WYKKAALKG-------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------------------------- 144 (490)
T ss_dssp HHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------------------------
Confidence 999998752 37899999999999 89999999999999752
Q ss_pred hhhhhhccCCCccCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----cCCHHHH
Q 004339 179 LFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLS 250 (760)
Q Consensus 179 ~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A 250 (760)
.++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.+|.. .+++++|
T Consensus 145 ----------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 145 ----------------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp ----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ----------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 467899999999998 89999999999999875 589999999999998 8999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhh----cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHh
Q 004339 251 IELVNEALKVNGKYPNALSMLGDLELK----NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 326 (760)
Q Consensus 251 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~ 326 (760)
+.+|.+++.. .++.+++.+|.+|.. .+++.+|+.+|.+++... ++.+++.+|.+ |..... ..
T Consensus 207 ~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~-y~~g~~--------~~ 272 (490)
T 2xm6_A 207 AQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI-LEQGLA--------GA 272 (490)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH-HHHTTT--------SS
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH-HHCCCC--------CC
Confidence 9999999875 578899999999997 889999999999998763 67889999999 876100 01
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC-
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK-----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG- 400 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g- 400 (760)
+++.+|+.+|++++.. .++.+++.+|.+|... +++++|+.+|.++++.. ++.+++++|.+|...|
T Consensus 273 ~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 273 KEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-------DATAQANLGAIYFRLGS 343 (490)
T ss_dssp CCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCC
Confidence 8999999999999876 6789999999999988 99999999999999864 4889999999999977
Q ss_pred --CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 401 --NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 401 --~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
++++|+.+|++++.. .++.+++.||.+|.. .+++++|+.+|++++... ++.++++||.+|..
T Consensus 344 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Confidence 899999999999985 679999999999999 899999999999999864 68899999999865
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=9.1e-26 Score=252.68 Aligned_cols=419 Identities=12% Similarity=0.086 Sum_probs=307.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 36 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 36 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
+|++++..+|.+..+|..++.. ...|++..|..+|++++..+|.++.+|..++.++. .|+++.|...|++++...|+
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~- 78 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH- 78 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-
T ss_pred ChhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Confidence 3788999999999999999985 78899999999999999999999999999999988 88999999999999999884
Q ss_pred CCCCCHHHHHHHHHH-HHHcCCHHHHHH----HHHHHhcccchhhhhcccchhhhhhhhhHHHH-------HHhHHhhhh
Q 004339 115 GEEVPIEVLNNIGVI-HFEKGEFESAHQ----SFKDALGDGIWLTLLDSKTKTYVIDASASMLQ-------FKDMQLFHR 182 (760)
Q Consensus 115 ~~~~~~~~~~~la~~-~~~~g~~~~A~~----~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 182 (760)
..+|..++.. ....|+++.|.. .|++++...+.... .............. .....+..+
T Consensus 79 -----~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 79 -----IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM----SYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp -----HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT----CHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc----cHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 6788888854 456788887766 77777653211000 00000000000000 002233333
Q ss_pred hhccCCCccCCcchH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHHH-----cCCc------
Q 004339 183 FENDGNHVELPWNKV--TVLFNLARLL-------------EQIHDTVAASVLYRL------ILFK-----YQDY------ 230 (760)
Q Consensus 183 l~~~~~~~~~~p~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------~l~~-----~p~~------ 230 (760)
...+...+. .|... ..+...+... ...+++..|...|.. .+.. .|..
T Consensus 150 ~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 150 RRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 344444444 34332 2332222211 134567777777665 3321 2221
Q ss_pred -HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHHcCCChHHHHHHHHHHhh-------cCCHH-------HHHHH
Q 004339 231 -VDAYLRLAAIAKAR----NNL----QLSIELVNEALKVNGKYPNALSMLGDLELK-------NDDWV-------KAKET 287 (760)
Q Consensus 231 -~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~ 287 (760)
...|.......... ++. ..++..|++++..+|.++.+|+.+|.++.. .|+++ .|+.+
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 23444444333221 222 478899999999999999999999999986 79987 99999
Q ss_pred HHHhhh-cCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCChHH
Q 004339 288 FRAASD-ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL-YAANGAGVVLAEKGQFDV 365 (760)
Q Consensus 288 ~~~al~-~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~ 365 (760)
|.+++. ..|. ....|+.++.+ +... |+++.|..+|++++...|.++ .+|..+|.++...|+++.
T Consensus 309 ~~~Al~~~~p~-~~~l~~~~~~~-~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 309 YERAISTLLKK-NMLLYFAYADY-EESR------------MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp HHHHTTTTCSS-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHH-HHhc------------CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH
Confidence 999997 6776 89999999999 8888 999999999999999999986 699999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 004339 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHV-YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKS 444 (760)
Q Consensus 366 A~~~~~~al~~~p~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 444 (760)
|+.+|.+++...| ....++...+.+ +...|+++.|..+|++++..+ |.++.++..++.++...|+++.|+.+
T Consensus 375 A~~~~~~Al~~~~-----~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 375 GRMIFKKAREDAR-----TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHTCTT-----CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHhccC-----CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 9999999999877 556777776665 446999999999999999974 67799999999999999999999999
Q ss_pred HHHHHHhCCCChh----HHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHH
Q 004339 445 LLRAIHLAPSNYT----LRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFS 499 (760)
Q Consensus 445 ~~~al~~~p~~~~----~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~ 499 (760)
|++++...|.++. +|..........| +...+..-+..+.+.|+
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G------------~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIG------------DLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSS------------CHHHHHHHHHHHHHHTH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCc
Confidence 9999999887665 5555444443333 34444455555555554
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=1.2e-27 Score=254.57 Aligned_cols=269 Identities=14% Similarity=0.106 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
...++.+|.+++..|++++|+.+|++++. ..|.++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~-------------------------------------------~~p~~~~~ 101 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAIL-------------------------------------------QDPGDAEA 101 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHH-------------------------------------------HCTTCHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------hCcCCHHH
Confidence 34577888888888888888888888876 45667778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH---------
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM--------- 270 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--------- 270 (760)
++.+|.++...|++++|+.+|.+++..+|.+..++..+|.++...|++++|+.+|.+++...|.++.++..
T Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 181 (365)
T 4eqf_A 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888887765554444
Q ss_pred -HHHHHhhcCCHHHHHHHHHHhhhcCCCC-ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 271 -LGDLELKNDDWVKAKETFRAASDATDGK-DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 271 -la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
+|.++...|++++|+.+|.+++...|.. ++.++..+|.+ |... |++++|+.+|++++..+|.++.
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al~~~p~~~~ 248 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL-FHLS------------GEFNRAIDAFNAALTVRPEDYS 248 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHH
Confidence 3778888888888888888888877653 56777888888 7777 8888888888888888888888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-------
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD------- 421 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------- 421 (760)
+++.+|.+|...|++++|+.+|.+++...| .++.+++++|.+|..+|++++|+.+|++++...+....
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 323 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQP-----GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHP 323 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchh
Confidence 888888888888888888888888888887 67888888888888888888888888888887544222
Q ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004339 422 ---AQILLYLARTHYEAEQWQDCKKSLLRAI 449 (760)
Q Consensus 422 ---~~~~~~la~~~~~~g~~~~A~~~~~~al 449 (760)
..++..++.++..+|+.+.|..++.+.+
T Consensus 324 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 324 AISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp ---CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 5677788888888888877777665543
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=5.5e-27 Score=247.93 Aligned_cols=259 Identities=9% Similarity=-0.020 Sum_probs=243.4
Q ss_pred CccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHcCCChHH
Q 004339 189 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNA 267 (760)
Q Consensus 189 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 267 (760)
.+..+|.+..+++.+|.++...|++++|+..|.+++.++|.+..+|+.+|.++...|+ +++|+.+|.+++.++|+++.+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4568899999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH
Q 004339 268 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 347 (760)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 347 (760)
|+.+|.++...|++.+|+.+|.+++.+.|. +..+|+.+|.+ +... |++++|+.+|++++.++|.+.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~-~~~~------------g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999998 99999999999 9999 999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCChHHH-----HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhhcCC
Q 004339 348 YAANGAGVVLAE-KGQFDVS-----KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG--NFALAMKMYQNCLRKFYYN 419 (760)
Q Consensus 348 ~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~ 419 (760)
.+|+++|.++.. .|.+++| +.+|.+++.++| .++.+|+++|.++...| ++.+|+..+..+ . ..|
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-----~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p 306 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSH 306 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTC
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCC
Confidence 999999999999 6665888 599999999999 88999999999999988 699999999887 4 378
Q ss_pred CcHHHHHHHHHHHHHhc--------c-HHHHHHHHHHH-HHhCCCChhHHhhHHHHHHHH
Q 004339 420 TDAQILLYLARTHYEAE--------Q-WQDCKKSLLRA-IHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 420 ~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~ 469 (760)
.++.++..+|.+|..+| + +++|+.+|+++ ++++|.....|..++.++...
T Consensus 307 ~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 307 SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 88999999999999985 3 59999999999 999999999999998886543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=5.3e-27 Score=249.56 Aligned_cols=273 Identities=15% Similarity=0.084 Sum_probs=239.3
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
..+..++.+|..++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|++++.++|.++.++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hc-cCCHhHHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhh
Q 004339 92 LI-SSDTGAALDAFKTARTLLKKAGEEV-----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 165 (760)
Q Consensus 92 ~~-~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 165 (760)
|. .|++.+|+.+|.+++.+.|...... ...++..+|.++...|++++|+.+|.+++.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------- 205 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH----------------- 205 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH-----------------
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----------------
Confidence 98 8899999999999999999863221 123445569999999999999999999998
Q ss_pred hhhhHHHHHHhHHhhhhhhccCCCccCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 166 DASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
..|. ++.+++.+|.++...|++++|+.+|.+++..+|.++.++..+|.++..
T Consensus 206 --------------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 206 --------------------------QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259 (365)
T ss_dssp --------------------------HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred --------------------------hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3455 778999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC-----------ChHHHHHHHHHHHH
Q 004339 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK-----------DSYATLSLGNWNYF 312 (760)
Q Consensus 244 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~lg~~~y~ 312 (760)
.|++++|+.+|++++..+|+++.++..+|.+|...|++.+|+.+|.+++.+.|.. ...+|..++.+ +.
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 338 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA-LS 338 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHH-HH
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHH-HH
Confidence 9999999999999999999999999999999999999999999999999987642 25678889988 88
Q ss_pred HHHhhhhcCchHHhhcHHHHHHHHHHHH
Q 004339 313 AALRNEKRAPKLEATHLEKAKELYTRVI 340 (760)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~A~~~~~~al 340 (760)
.. |+.+.+..+..+.+
T Consensus 339 ~~------------g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 339 LM------------DQPELFQAANLGDL 354 (365)
T ss_dssp HH------------TCHHHHHHHHTTCC
T ss_pred Hc------------CcHHHHHHHHHhhH
Confidence 88 88888887766543
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=6.2e-27 Score=247.51 Aligned_cols=260 Identities=12% Similarity=0.021 Sum_probs=241.4
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCcH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ-IEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~ 82 (760)
+.+|..+|.++.+|+.+|.++...|++++|+.+|++++.++|.++.+|+.+|.++..+|+ +++|+.+|++++.++|+++
T Consensus 87 ~~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 87 VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp SSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred chhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 457788999999999999999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 83 QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 83 ~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
.+|+.+|.++. .|++.+|+..|++++.++|.+ ..+|+++|.++..+|++++|+.+|++++.
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-----~~a~~~lg~~~~~~g~~~eAl~~~~~al~------------- 228 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-----YHAWQHRQWVIQEFKLWDNELQYVDQLLK------------- 228 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCCTTHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHH-------------
Confidence 99999999998 899999999999999999997 89999999999999999999999999998
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHcCCcHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ-IHDTVAA-----SVLYRLILFKYQDYVDAYL 235 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~~l~~~p~~~~~~~ 235 (760)
.+|.+..+|+++|.++.. .|.+++| +.+|.+++.++|++..+|+
T Consensus 229 ------------------------------l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~ 278 (382)
T 2h6f_A 229 ------------------------------EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN 278 (382)
T ss_dssp ------------------------------HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred ------------------------------hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 678899999999999999 5655777 5999999999999999999
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC--------C-HHHHHHHHHHh-hhcCCCCChHHH
Q 004339 236 RLAAIAKARN--NLQLSIELVNEALKVNGKYPNALSMLGDLELKND--------D-WVKAKETFRAA-SDATDGKDSYAT 303 (760)
Q Consensus 236 ~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~~~~ 303 (760)
.++.++...| ++.+|+..+.++ ..+|+++.++..+|.+|...| + +++|+.+|.++ +.+.|. ....|
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w 356 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYW 356 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHH
Confidence 9999999988 689999999998 889999999999999999874 3 59999999999 888887 77778
Q ss_pred HHHHHHHHHHH
Q 004339 304 LSLGNWNYFAA 314 (760)
Q Consensus 304 ~~lg~~~y~~~ 314 (760)
..++.. +...
T Consensus 357 ~~~~~~-l~~~ 366 (382)
T 2h6f_A 357 RYIGRS-LQSK 366 (382)
T ss_dssp HHHHHH-HHHH
T ss_pred HHHHHH-HHHH
Confidence 777777 5444
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=2.8e-26 Score=239.45 Aligned_cols=274 Identities=13% Similarity=0.081 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
...++.+|.++...|++++|+.+|.+++. ..|.++.+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~ 57 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQ-------------------------------------------AAPEREEA 57 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCTTCHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH-------------------------------------------hCCCCHHH
Confidence 45678888999999999999999998887 45667888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH--------
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML-------- 271 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------- 271 (760)
++.+|.++...|++++|+.+|.+++..+|.+..++..+|.++...|++++|+.+|.+++...|.+..++..+
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDID 137 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999888888777766
Q ss_pred ------HH-HHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 272 ------GD-LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 272 ------a~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
+. ++...|++.+|+.+|.+++...|. ...++..+|.+ |... |+++.|+.+|.+++..+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~-~~~~------------~~~~~A~~~~~~~~~~~~ 203 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL-YNLS------------NNYDSAAANLRRAVELRP 203 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHh------------ccHHHHHHHHHHHHHhCC
Confidence 66 678888889999999988888877 78888888888 8887 889999999999998888
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC----
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT---- 420 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---- 420 (760)
.++.++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+..|++++...+...
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINP-----GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 8888888999999999999999999999988887 7788888999999999999999999998888743310
Q ss_pred ------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 421 ------DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 421 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
++.++..+|.++..+|++++|..++++++...|.+
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 57788888999999999999988888877766543
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=5.7e-26 Score=237.05 Aligned_cols=273 Identities=12% Similarity=0.094 Sum_probs=245.8
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
..+..++.+|.++...|++++|+.+|.+++..+|.+..++..+|.++...|++++|+.+|.+++..+|.++.++..+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHH--------------HH-HHHHHHHhhhhcCchHHhhcHHHHHHHHHHH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSL--------------GN-WNYFAALRNEKRAPKLEATHLEKAKELYTRV 339 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~l--------------g~-~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 339 (760)
+...|++.+|+.+|.+++...|. ....+..+ +. + +... |+++.|+.+|.++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFF-FAAP------------NEYRECRTLLHAA 164 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CC-TTSH------------HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHH-HHHc------------ccHHHHHHHHHHH
Confidence 99999999999999999998876 44444444 33 3 4444 9999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004339 340 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419 (760)
Q Consensus 340 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 419 (760)
+...|.++.++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+..|++++.. .|
T Consensus 165 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~ 237 (327)
T 3cv0_A 165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-----DDAQLWNKLGATLANGNRPQEALDAYNRALDI--NP 237 (327)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 999999999999999999999999999999999999998 78999999999999999999999999999996 67
Q ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------------ChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHH
Q 004339 420 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS------------NYTLRFDAGVAMQKFSASTLQKTRRTADEVRST 487 (760)
Q Consensus 420 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a 487 (760)
.++.++..+|.+|...|++++|+.+|++++.+.|. ++.+++.++.++...+ +...|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A 305 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN------------RPDLV 305 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT------------CHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC------------CHHHH
Confidence 78999999999999999999999999999999999 7899999999988877 55666
Q ss_pred HHHHHHHHHHHHH
Q 004339 488 VAELENAVRVFSH 500 (760)
Q Consensus 488 ~~~l~~A~~~~~~ 500 (760)
...+..++..+..
T Consensus 306 ~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 306 ELTYAQNVEPFAK 318 (327)
T ss_dssp HHHTTCCSHHHHH
T ss_pred HHHHHHHHHhcch
Confidence 6666666665554
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.7e-24 Score=217.44 Aligned_cols=241 Identities=12% Similarity=0.027 Sum_probs=226.9
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC-------hHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNA 267 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 267 (760)
..+.+++.+|.++...|++++|+.+|.+++... .++.++..+|.++...|++++|+.++.+++...|.+ +.+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 457889999999999999999999999999999 899999999999999999999999999999999877 789
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH
Q 004339 268 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 347 (760)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 347 (760)
+..+|.++...|++++|+.+|.+++...|. +.+ +... |+++.|+..|.+++..+|.++
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~ 139 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADI-LTKL------------RNAEKELKKAEAEAYVNPEKA 139 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHH-HHHH------------HHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHH-HHHH------------hHHHHHHHHHHHHHHcCcchH
Confidence 999999999999999999999999998775 345 6666 999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHH
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLY 427 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 427 (760)
.++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+.+|++++.. .|.++.+++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~ 212 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIR 212 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHH
Confidence 9999999999999999999999999999998 78999999999999999999999999999996 6778999999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhC------CCChhHHhhHHHH
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVA 465 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 465 (760)
+|.+|...|++++|+.+|++++.+. |.+..++..++.|
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999999999 8888888777665
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=4e-25 Score=224.31 Aligned_cols=253 Identities=14% Similarity=0.092 Sum_probs=227.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh----HHHHHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP----NALSML 271 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l 271 (760)
++.+++.+|.++...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++. .|.++ .++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999999999999 44443 358999
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHH
Q 004339 272 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 351 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 351 (760)
|.++...|++++|+.+|.+++...|. .+.++..+|.+ |... |+++.|+.+|++++..+|.++.++.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~ 146 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSY-FYNK------------GNFPLAIQYMEKQIRPTTTDPKVFY 146 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH-HHHT------------TCHHHHHHHHGGGCCSSCCCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHH-HHHc------------cCHHHHHHHHHHHhhcCCCcHHHHH
Confidence 99999999999999999999999988 88999999999 9998 9999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhcCCCc------H
Q 004339 352 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNTD------A 422 (760)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~------~ 422 (760)
.+|......+++++|+.+|.+++...| .++.+++.+|.++...|+ +++|+..|++++......++ .
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 221 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence 999555556699999999999999999 789999999999999999 99999999999998632222 4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
.++..+|.+|...|++++|+.+|++++.++|+++.++-.++.+...
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 7899999999999999999999999999999999999888776543
No 31
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.93 E-value=3.1e-25 Score=242.11 Aligned_cols=361 Identities=13% Similarity=0.037 Sum_probs=274.7
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI---EKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
...+|..++..|++++|+.+|+++... .++.+++.||.+|...|++ .+|+.+|++++.. ++.+++.+|.++.
T Consensus 6 ~~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 6 DQRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLA 80 (452)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHH
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence 367899999999999999999999875 5788899999999999998 9999999999966 7788999999544
Q ss_pred -cC-----CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 94 -SS-----DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 94 -~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
.+ ++.+|+.+|++++... + +.+++.||.+|...+....+...+......
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g--~-----~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a------------------ 135 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG--E-----GNTLIPLAMLYLQYPHSFPNVNAQQQISQW------------------ 135 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT--C-----SSCHHHHHHHHHHCGGGCTTCCHHHHHHHH------------------
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC--C-----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH------------------
Confidence 44 6889999999998842 2 468999999999887665554443333221
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV----LYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~----~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
..+.++.+++.+|.+|...+.++.+.. ++..+...+| .+++.||.+|..
T Consensus 136 ------------------------~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~ 188 (452)
T 3e4b_A 136 ------------------------QAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQK 188 (452)
T ss_dssp ------------------------HHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHH
T ss_pred ------------------------HHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHH
Confidence 123457899999999999986555444 4554444444 499999999999
Q ss_pred cC---CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc----CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHh
Q 004339 244 RN---NLQLSIELVNEALKVNGKYPNALSMLGDLELKN----DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 316 (760)
Q Consensus 244 ~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~ 316 (760)
.| ++.+|+.+|.++....|.....++.+|.+|... +++.+|+.+|.++. |. ++.+++.+|.+ |+...
T Consensus 189 ~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g-~~~a~~~Lg~~-~~~~~- 262 (452)
T 3e4b_A 189 KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG-YPASWVSLAQL-LYDFP- 262 (452)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG-STHHHHHHHHH-HHHSG-
T ss_pred cCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC-CHHHHHHHHHH-HHhCC-
Confidence 99 999999999999999999999999999999766 79999999999998 44 88999999998 65321
Q ss_pred hhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHhcCCCCCCchHHHHH
Q 004339 317 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG-----QFDVSKDLFTQVQEAASGSVFVQMPDVWIN 391 (760)
Q Consensus 317 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 391 (760)
..+++.+|+.+|+++... .++.+++.||.+|. .| ++.+|+.+|.++. | .++.++++
T Consensus 263 --------~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~-----g~~~A~~~ 323 (452)
T 3e4b_A 263 --------ELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G-----REVAADYY 323 (452)
T ss_dssp --------GGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T-----TCHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C-----CCHHHHHH
Confidence 128999999999999865 58999999999998 56 9999999999999 5 77999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChhHHhhHH
Q 004339 392 LAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLRFDAG 463 (760)
Q Consensus 392 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 463 (760)
||.+|.. ..++.+|+.+|+++... .++.+.+.||.+|.. ..++.+|..+|.+|....+ +.+...++
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~ 397 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARN----GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLAT 397 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTT----TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHH
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhh----ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 9999987 44999999999999884 567889999999985 4689999999999998764 44555565
Q ss_pred HH
Q 004339 464 VA 465 (760)
Q Consensus 464 ~~ 465 (760)
.+
T Consensus 398 ~l 399 (452)
T 3e4b_A 398 QL 399 (452)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 32
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=234.96 Aligned_cols=282 Identities=18% Similarity=0.172 Sum_probs=229.0
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKI------DPR 80 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 80 (760)
+..+.+++.+|.+++..|++++|+.+|++++...|.++ .++..+|.++...|++++|+.+|.+++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44567889999999999999999999999999999984 68999999999999999999999999877 345
Q ss_pred cHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC--------------------HHH
Q 004339 81 DAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE--------------------FES 138 (760)
Q Consensus 81 ~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~--------------------~~~ 138 (760)
.+.++..+|.++. .|+++.|+.+|.+++.+.|...... ...++..+|.+|...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 5778999999988 8999999999999999988753221 25689999999999999 999
Q ss_pred HHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 004339 139 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 218 (760)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 218 (760)
|+.+|.+++...+. ....|....++..+|.++...|++++|+.
T Consensus 166 A~~~~~~al~~~~~-------------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 166 AVDFYEENLSLVTA-------------------------------------LGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHH-------------------------------------TTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHHHh-------------------------------------ccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 99999988763210 01234566789999999999999999999
Q ss_pred HHHHHHHHcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC------hHHHHHHHHHHhhcCCHHHHHH
Q 004339 219 LYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 219 ~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~ 286 (760)
+|.+++...|.. ..++..+|.++...|++++|+.+|.+++.+.|.. ..++..+|.++...|++++|+.
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 999999876543 3388999999999999999999999999887765 6688899999999999999999
Q ss_pred HHHHhhhcCCCCC-----hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 287 TFRAASDATDGKD-----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 287 ~~~~al~~~~~~~-----~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
+|.+++...+... ..++..+|.+ |... |++++|+.+|++++.+
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNA-YTAL------------GNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHH
Confidence 9999887644311 3344444554 4444 5555555555555444
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=1.4e-24 Score=212.12 Aligned_cols=209 Identities=20% Similarity=0.131 Sum_probs=131.3
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
|.++.+++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhh
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 169 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 169 (760)
++. .+. .. +..+...|++++|+..|.+++.
T Consensus 82 ~~~~~~~----------------~~------------~~~~~~~g~~~~A~~~~~~al~--------------------- 112 (217)
T 2pl2_A 82 AYVALYR----------------QA------------EDRERGKGYLEQALSVLKDAER--------------------- 112 (217)
T ss_dssp HHHHHHH----------------TC------------SSHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHhhh----------------hh------------hhhcccccCHHHHHHHHHHHHH---------------------
Confidence 776 400 00 0011122555555555555554
Q ss_pred HHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Q 004339 170 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 249 (760)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 249 (760)
.+|.++.+++.+|.++...|++++|+..|++++.++ .++.+++.+|.++...|++++
T Consensus 113 ----------------------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 113 ----------------------VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDE 169 (217)
T ss_dssp ----------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred ----------------------hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH
Confidence 344455555555555555555555555555555555 555555555555555555555
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 004339 250 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291 (760)
Q Consensus 250 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (760)
|+..|++++..+|+++.++..+|.++...|++++|+..|.++
T Consensus 170 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 170 ALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555544
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=4.6e-23 Score=210.82 Aligned_cols=260 Identities=11% Similarity=0.031 Sum_probs=230.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcch-HHHHHHHHHH
Q 004339 128 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-VTVLFNLARL 206 (760)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~-~~~~~~la~~ 206 (760)
...+..|+|..|+..++++.. .+|.+ ....+.++++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~-------------------------------------------~~p~~~~e~~~~l~r~ 43 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP-------------------------------------------SSPERDVERDVFLYRA 43 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC-------------------------------------------CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc-------------------------------------------CCchhhHHHHHHHHHH
Confidence 456779999999999988755 44555 4577889999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cCCChHHHHHHHHHHhhcCCHHHH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--NGKYPNALSMLGDLELKNDDWVKA 284 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A 284 (760)
|...|+++.|+..++. ..|....++..++.++...+++++|+..+++++.. +|+++.+++.+|.++...|++++|
T Consensus 44 yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 44 YLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp HHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999998866 26667788899999999999999999999999876 699999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHcCC
Q 004339 285 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG--VVLAEKGQ 362 (760)
Q Consensus 285 ~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~ 362 (760)
+.+|.+ |. +..++..+|.+ |... |+++.|+..|++++..+|++.......+ .++...|+
T Consensus 121 l~~l~~-----~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 121 LRTLHQ-----GD-SLECMAMTVQI-LLKL------------DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HHHHTT-----CC-SHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHhC-----CC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH
Confidence 999987 44 78899999999 9998 9999999999999999999876555444 33445689
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHH-H
Q 004339 363 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD-C 441 (760)
Q Consensus 363 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~-A 441 (760)
+++|+.+|++++...| .++.+++++|.++..+|++++|+..|++++.. .|.++.+++++|.++...|++.+ +
T Consensus 182 ~~eA~~~~~~~l~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCS-----PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999998 88999999999999999999999999999997 78899999999999999999976 5
Q ss_pred HHHHHHHHHhCCCChhHH
Q 004339 442 KKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 442 ~~~~~~al~~~p~~~~~~ 459 (760)
..++++++.++|+++.+.
T Consensus 255 ~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 255 NRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCChHHH
Confidence 789999999999998765
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=3.8e-24 Score=230.59 Aligned_cols=308 Identities=18% Similarity=0.156 Sum_probs=227.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCC-C
Q 004339 45 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA----QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEE-V 118 (760)
Q Consensus 45 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~-~ 118 (760)
+....+++.+|.++...|++++|+.+|++++.+.|.++ .++..+|.++. .|++..|+.+|.+++.+.+..... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34577899999999999999999999999999999884 57889999988 889999999999999986543211 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
...++..+|.+|...|++++|+.+|.+++...+... ..+..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------~~~~~~~ 128 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-------------------------------------DKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-------------------------------------cccchHH
Confidence 367899999999999999999999999987533110 1223466
Q ss_pred HHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCCHHHHHH
Q 004339 199 VLFNLARLLEQIHD--------------------TVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 199 ~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
++..+|.+|...|+ ++.|+.+|.+++.. .|....++..+|.++...|++++|+.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 89999999999999 99999999999876 34456678899999999999999999
Q ss_pred HHHHHHHHcCCChH------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCC-----hHHHHHHHHHHHHHHHhhhhcC
Q 004339 253 LVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDGKD-----SYATLSLGNWNYFAALRNEKRA 321 (760)
Q Consensus 253 ~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~lg~~~y~~~~~~~~~~ 321 (760)
++.+++.+.|.... ++..+|.++...|++++|+.+|.+++...+... ..++..+|.+ |...
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~------- 280 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT-YTLL------- 280 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHT-------
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH-HHHh-------
Confidence 99999987665433 777888888888888888888888877654311 3455556666 5555
Q ss_pred chHHhhcHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC-CCCCchHHHHHHHH
Q 004339 322 PKLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAH 394 (760)
Q Consensus 322 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~la~ 394 (760)
|++++|+.+|.+++...+.. ..++..+|.+|...|++++|+.+|.+++.+.+.. ..+....++..+|.
T Consensus 281 -----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 355 (406)
T 3sf4_A 281 -----QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSD 355 (406)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 66666666666666553332 4455666666666666666666666666654311 00122445555566
Q ss_pred HHHHcCCH
Q 004339 395 VYFAQGNF 402 (760)
Q Consensus 395 ~~~~~g~~ 402 (760)
++...|+.
T Consensus 356 ~~~~~g~~ 363 (406)
T 3sf4_A 356 LQMVLGLS 363 (406)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhHh
Confidence 65555544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-23 Score=211.76 Aligned_cols=227 Identities=15% Similarity=0.105 Sum_probs=214.3
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------HHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-------AQA 84 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 84 (760)
..+..++.+|.+++..|+|++|+.+|++++..+ .++.+++.+|.++...|++++|+.+|.+++.+.|.+ +.+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 456789999999999999999999999999999 899999999999999999999999999999998876 789
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
+..+|.++. .|+++.|+.+|.+++.+.|. +.++...|++++|+..+.+++.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~~--------------- 133 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------------ADILTKLRNAEKELKKAEAEAY--------------- 133 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch-------------hHHHHHHhHHHHHHHHHHHHHH---------------
Confidence 999999998 88999999999999998765 3457777889999999999987
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
..|..+.+++.+|.++...|++++|+.+|.+++..+|.++.++..+|.++..
T Consensus 134 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 185 (258)
T 3uq3_A 134 ----------------------------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK 185 (258)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ----------------------------cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q 004339 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 295 (760)
Q Consensus 244 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (760)
.|++++|+.+|.+++..+|.++.++..+|.++...|++.+|+.+|.+++...
T Consensus 186 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 186 LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999987
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=1.6e-23 Score=212.47 Aligned_cols=257 Identities=12% Similarity=0.065 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+.+++.+|.+++..|++++|+.+|.+++. ..|.++.+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-------------------------------------------~~p~~~~~ 39 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEA-------------------------------------------KKYNSPYI 39 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHH-------------------------------------------TTCCCSTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------------------------------hCCCcHHH
Confidence 56789999999999999999999999997 56677889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
++.+|.++...|++++|+.+|.+++. .|.+ ..++..+|.++...|++++|+.+|.+++..+|.++.++..+|.+|
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 99999999999999999999999998 4433 456999999999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004339 276 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 355 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 355 (760)
...|++++|+.+|.+++...|. .+.+++.+|.. .+.. ++++.|+.+|.+++..+|.++.++..+|.
T Consensus 119 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 184 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQA-YYYN------------KEYVKADSSFVKVLELKPNIYIGYLWRAR 184 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 9999999999999999999887 89999999944 4444 79999999999999999999999999999
Q ss_pred HHHHcCC---hHHHHHHHHHHHHHh---cCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 356 VLAEKGQ---FDVSKDLFTQVQEAA---SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 356 ~~~~~g~---~~~A~~~~~~al~~~---p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
++...|+ +++|+..|.+++... |.........++..+|.+|...|++++|+.+|++++.. .|.++.++-.++
T Consensus 185 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~ 262 (272)
T 3u4t_A 185 ANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHC
T ss_pred HHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHHHHhh
Confidence 9999999 999999999999987 31000012478999999999999999999999999997 788888888887
Q ss_pred HHHHHhc
Q 004339 430 RTHYEAE 436 (760)
Q Consensus 430 ~~~~~~g 436 (760)
.+....+
T Consensus 263 ~~~~~~~ 269 (272)
T 3u4t_A 263 MKLEHHH 269 (272)
T ss_dssp -------
T ss_pred hhhcccc
Confidence 7765543
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.92 E-value=5e-23 Score=210.49 Aligned_cols=281 Identities=11% Similarity=0.098 Sum_probs=215.5
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhh
Q 004339 86 IDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 165 (760)
Q Consensus 86 ~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 165 (760)
+.+-..+..|+|..|+..++++....|.. .......++.+|..+|+++.|+..++.
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~~~p~~----~~e~~~~l~r~yi~~g~~~~al~~~~~-------------------- 59 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKPSSPER----DVERDVFLYRAYLAQRKYGVVLDEIKP-------------------- 59 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCSHHH----HHHHHHHHHHHHHHTTCHHHHHHHSCT--------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCchh----hHHHHHHHHHHHHHCCCHHHHHHHhcc--------------------
Confidence 34444556777777777777766666654 145667778888888888888875532
Q ss_pred hhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHH
Q 004339 166 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~ 243 (760)
..|....++..++..+...++++.|+..|++++.. +|+++.+++.+|.++..
T Consensus 60 --------------------------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 60 --------------------------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp --------------------------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred --------------------------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 12345677778888888888888888888888865 58888888888888888
Q ss_pred cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHH-HHHHHhhhhcCc
Q 004339 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN-YFAALRNEKRAP 322 (760)
Q Consensus 244 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~-y~~~~~~~~~~~ 322 (760)
.|++++|+.+|.+ |.++.++..+|.++...|++++|+..|++++...|. .....+..+.+. +...
T Consensus 114 ~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~l~~a~~~l~~~~-------- 179 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED-ATLTQLATAWVSLAAGG-------- 179 (291)
T ss_dssp TTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCT--------
T ss_pred CCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhCc--------
Confidence 8888888888877 788888888888888888888888888888888765 433332222220 2222
Q ss_pred hHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 323 KLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 323 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
|++++|+.+|++++..+|.++.+++++|.++...|++++|+.+|.+++...| +++.++.++|.++...|++
T Consensus 180 ----~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-----~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 180 ----EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-----GHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp ----THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCC
T ss_pred ----hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999999999999999999999999999998 8899999999999999998
Q ss_pred HH-HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 004339 403 AL-AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 445 (760)
Q Consensus 403 ~~-A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 445 (760)
.+ +..++++++.. .|.++.+.- +..+.+.|++|..-|
T Consensus 251 ~eaa~~~~~~~~~~--~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 251 PEVTNRYLSQLKDA--HRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHH----HHHHHHHHHHHHHHc
Confidence 76 56788888886 666666543 446666676666554
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=8.2e-24 Score=206.73 Aligned_cols=199 Identities=14% Similarity=0.069 Sum_probs=146.2
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 194 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
|.++.+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++.++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc-----------CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 274 LELKN-----------DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 274 ~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
++... |++++|+..|.+++...|. ++.+++.+|.+ |... |++++|+..|++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~-~~~~------------g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLV-YALL------------GERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhc
Confidence 99988 6666666666666666665 56666666666 6665 6666666666666666
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
+ .++.+++.+|.+|...|++++|+..|++++...| .++.+++++|.++...|++++|+..|+++
T Consensus 148 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 148 E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-----KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTC--------------
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6 6666666666666666666666666666666666 55666666666666666666666666554
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.91 E-value=2.5e-23 Score=227.02 Aligned_cols=357 Identities=12% Similarity=0.084 Sum_probs=267.6
Q ss_pred CCCchhhhhHHHHHHHcCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCcH
Q 004339 11 HEFIFPYYGLGQVQLKLGDF---RSALTNFEKVLEIYPDNCETLKALGHIYVQLG-----QIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~ 82 (760)
+.++.+++.+|.+|+..|++ .+|+.+|++++.. ++.+++.+|.++...+ ++.+|+.+|++++.. .++
T Consensus 32 ~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~ 106 (452)
T 3e4b_A 32 LGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEG 106 (452)
T ss_dssp HTCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCS
T ss_pred CCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCH
Confidence 46788999999999999999 9999999999966 7889999999777766 889999999999985 455
Q ss_pred HHHHHHHHHHccC-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 83 QAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 83 ~~~~~la~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
.+++.||.+|..+ .+..+...+.......+.. .+.+++.+|.+|...+.++.++.........
T Consensus 107 ~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~------------ 170 (452)
T 3e4b_A 107 NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTYDQHLDDVERICKA------------ 170 (452)
T ss_dssp SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcccCHHHHHHHHHH------------
Confidence 5899999999843 4444444444444444333 2689999999999999776666654333221
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH---DTVAASVLYRLILFKYQDYVDAYLRLA 238 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la 238 (760)
....++.+++.+|.+|...| ++.+|+.+|.++....|.....++.+|
T Consensus 171 ------------------------------a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg 220 (452)
T 3e4b_A 171 ------------------------------ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVA 220 (452)
T ss_dssp ------------------------------HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred ------------------------------HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11124459999999999999 999999999999999999999889999
Q ss_pred HHHHHc----CCHHHHHHHHHHHHHHcCCChHHHHHHHHH-H--hhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHH
Q 004339 239 AIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDL-E--LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNY 311 (760)
Q Consensus 239 ~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y 311 (760)
.+|... +++.+|+.+|+++. |.++.+++.+|.+ + ...+++.+|+.+|.++.... ++.+++.||.+ |
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~-y 293 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKL-Y 293 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHH-H
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH-H
Confidence 999766 79999999999998 8999999999998 5 57899999999999999754 78899999999 7
Q ss_pred HHHHhhhhcCchHHhh-----cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhcCCCC
Q 004339 312 FAALRNEKRAPKLEAT-----HLEKAKELYTRVIVQHTSNLYAANGAGVVLAE----KGQFDVSKDLFTQVQEAASGSVF 382 (760)
Q Consensus 312 ~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 382 (760)
. . | ++.+|+.+|+++. |.++.++++||.+|.. ..++.+|+.+|.++.+.
T Consensus 294 ~-~------------G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------ 351 (452)
T 3e4b_A 294 Y-E------------GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN------ 351 (452)
T ss_dssp H-H------------CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT------
T ss_pred H-c------------CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh------
Confidence 7 4 5 9999999999998 8999999999999986 44999999999999874
Q ss_pred CCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhC
Q 004339 383 VQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE--AEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 383 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~ 452 (760)
.++.+.++||.+|.. ..++.+|+.+|.++... .++.+...++.+... .++..+|...+++.....
T Consensus 352 -g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~----g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 352 -GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ----DTPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp -TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 458899999999985 45999999999999985 445666666666433 446666777776665543
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=3.6e-23 Score=223.67 Aligned_cols=285 Identities=18% Similarity=0.110 Sum_probs=244.1
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKI------DPR 80 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 80 (760)
|..+..++.+|..++..|++++|+.+|++++...|.++ .+++.+|.+|...|++++|+.+|++++.+ .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34556788999999999999999999999999999986 58999999999999999999999999988 577
Q ss_pred cHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 004339 81 DAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGE-EVPIEVLNNIGVIHFEKGE-----------------FESAHQ 141 (760)
Q Consensus 81 ~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~-----------------~~~A~~ 141 (760)
...++..+|.+|. .|++..|+.+|.+++.+.+.... +....++..+|.+|...|+ ++.|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 7889999999998 89999999999999999544321 1126789999999999999 899999
Q ss_pred HHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 142 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 221 (760)
Q Consensus 142 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 221 (760)
+|.+++.+.+.. ...+....++..+|.++...|++++|+.+|.
T Consensus 205 ~~~~al~~~~~~-------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 205 FYQENLKLMRDL-------------------------------------GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHH-------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHc-------------------------------------CCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 888887632100 1234566799999999999999999999999
Q ss_pred HHHHHcCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC------hHHHHHHHHHHhhcCCHHHHHHHHH
Q 004339 222 LILFKYQDYV------DAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFR 289 (760)
Q Consensus 222 ~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 289 (760)
+++...|... .++..+|.++...|++++|+.+|.+++...+.. ..++..+|.++...|++++|+.+|.
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9998876433 388999999999999999999999999987754 5688999999999999999999999
Q ss_pred HhhhcCCCC-----ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC
Q 004339 290 AASDATDGK-----DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 290 ~al~~~~~~-----~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 345 (760)
+++...+.. ...++..+|.+ |... |++++|+.+|++++.+.+.
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNA-HSAI------------GGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHH-HHHh------------ccHHHHHHHHHHHHHHHhh
Confidence 999875431 24577888998 8888 9999999999999998764
No 42
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=3.8e-23 Score=223.42 Aligned_cols=282 Identities=16% Similarity=0.073 Sum_probs=241.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCc-chHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW-NKVT 198 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~~~~ 198 (760)
...++.+|..++..|++++|+.+|++++...| .++ ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----------------------------------------~~~~~~~~ 87 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGT----------------------------------------EDLRTLSA 87 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----------------------------------------SCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc----------------------------------------cChhHHHH
Confidence 56778899999999999999999999998432 111 1236
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------cCCChH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV------NGKYPN 266 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 266 (760)
+++.+|.+|...|++++|+.+|.+++.. .|....++..+|.++...|++++|+.+|.+++.. .|....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 8999999999999999999999999987 5777889999999999999999999999999988 455667
Q ss_pred HHHHHHHHHhhcCC-----------------HHHHHHHHHHhhhcCC-----CCChHHHHHHHHHHHHHHHhhhhcCchH
Q 004339 267 ALSMLGDLELKNDD-----------------WVKAKETFRAASDATD-----GKDSYATLSLGNWNYFAALRNEKRAPKL 324 (760)
Q Consensus 267 ~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~~-----~~~~~~~~~lg~~~y~~~~~~~~~~~~~ 324 (760)
++..+|.+|...|+ ++.|+.+|.+++.+.+ .....++..+|.+ |...
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~---------- 236 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNT-YYLL---------- 236 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHT----------
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHc----------
Confidence 99999999999999 9999999999887542 1134578889999 8888
Q ss_pred HhhcHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHH
Q 004339 325 EATHLEKAKELYTRVIVQHTSNL------YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYF 397 (760)
Q Consensus 325 ~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~la~~~~ 397 (760)
|+++.|+.+|.+++.+.|... .++..+|.+|...|++++|+.+|.+++...|... ......++..+|.+|.
T Consensus 237 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 237 --GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999876432 3889999999999999999999999999987211 1122678999999999
Q ss_pred HcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 398 AQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
..|++++|+.+|++++...+...+ ..++..+|.+|..+|++++|+.+|++++.+.+.
T Consensus 315 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999999999999997644333 678999999999999999999999999999864
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=8.5e-23 Score=213.39 Aligned_cols=284 Identities=13% Similarity=0.051 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
...++..|..++..|++++|+.+|++++...|. ..+....+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------~~~~~~~~ 45 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---------------------------------------DLKTLSAI 45 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc---------------------------------------cHHHHHHH
Confidence 456788999999999999999999999984321 01112568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC------hHH
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNA 267 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 267 (760)
+..+|.++...|+++.|+.+|.+++.. .|....++..+|.++...|++++|+.++.+++...|.. ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 899999999999999999999999877 45567789999999999999999999999999886644 338
Q ss_pred HHHHHHHHhhcCC--------------------HHHHHHHHHHhhhcCCC-----CChHHHHHHHHHHHHHHHhhhhcCc
Q 004339 268 LSMLGDLELKNDD--------------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAP 322 (760)
Q Consensus 268 ~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~~~-----~~~~~~~~lg~~~y~~~~~~~~~~~ 322 (760)
+..+|.++...|+ +..|+.++.+++...+. ....++..+|.+ |...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~~~~-------- 196 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT-HYLL-------- 196 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHH--------
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHh--------
Confidence 8899999999999 99999999998875321 134577888998 8888
Q ss_pred hHHhhcHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHH
Q 004339 323 KLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHV 395 (760)
Q Consensus 323 ~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~la~~ 395 (760)
|+++.|+.+|.+++...|.. ..++..+|.++...|++++|+.+|.+++.+.|... .+..+.++..+|.+
T Consensus 197 ----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 197 ----GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 99999999999999875532 33899999999999999999999999999877211 11226789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 396 YFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
+...|++++|+.+|++++...+...+ ..++..+|.+|...|++++|+.+|++++.+.+..
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987644333 6688899999999999999999999999988753
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=8.7e-23 Score=213.28 Aligned_cols=282 Identities=18% Similarity=0.178 Sum_probs=239.3
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCcHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQ 83 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 83 (760)
...++..|..++..|++++|+.+|++++...|.+ ..++..+|.++...|++++|+.+|.+++.+ .|..+.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 4568899999999999999999999999999998 478889999999999999999999999887 455677
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC--------------------HHHHHH
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE--------------------FESAHQ 141 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~--------------------~~~A~~ 141 (760)
++..+|.++. .|++..|+..|.+++.+.+..+... ...++..+|.+|...|+ ++.|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 8999999988 8899999999999999988753211 24588999999999999 899999
Q ss_pred HHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 142 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 221 (760)
Q Consensus 142 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 221 (760)
+|.+++...+. ....+....++..+|.++...|++++|+.+|.
T Consensus 165 ~~~~a~~~~~~-------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 207 (338)
T 3ro2_A 165 LYEENLSLVTA-------------------------------------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207 (338)
T ss_dssp HHHHHHHHHHH-------------------------------------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-------------------------------------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99888763210 01234456789999999999999999999999
Q ss_pred HHHHHcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC------hHHHHHHHHHHhhcCCHHHHHHHHH
Q 004339 222 LILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFR 289 (760)
Q Consensus 222 ~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 289 (760)
+++...+.. ..++..+|.++...|++++|+.++.+++...+.. ..++..+|.++...|++++|+.+|.
T Consensus 208 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (338)
T 3ro2_A 208 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 287 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999876432 3489999999999999999999999999887655 6688999999999999999999999
Q ss_pred HhhhcCCCC-----ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC
Q 004339 290 AASDATDGK-----DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 290 ~al~~~~~~-----~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 345 (760)
+++...+.. ...++..+|.+ |... |++++|+.+|++++.+.+.
T Consensus 288 ~a~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 288 KHLAIAQELKDRIGEGRACWSLGNA-YTAL------------GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHHHHh
Confidence 999865431 24577889999 9888 9999999999999988764
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=2.5e-22 Score=199.68 Aligned_cols=219 Identities=16% Similarity=0.157 Sum_probs=181.4
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
.+..++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|.+++..+|.++.++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHH
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 171 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 171 (760)
. .|+++.|+..|.+++...|.. ..++..+|.++...|++++|+.+|.+++.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------------------- 153 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMEN-----GDLFYMLGTVLVKLEQPKLALPYLQRAVE----------------------- 153 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCS-----HHHHHHHHHHHHHTSCHHHHHHHHHHHHH-----------------------
T ss_pred HHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHH-----------------------
Confidence 8 889999999999999998876 78999999999999999999999999987
Q ss_pred HHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHH
Q 004339 172 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 251 (760)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 251 (760)
..|.++.+++.+|.++...|++++|+.+|.+++...|.+..++..+|.++...|++++|+
T Consensus 154 --------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 154 --------------------LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred --------------------hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 456677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 252 ELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 252 ~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
.+|.+++..+|+++.++..++.+....+
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999999998887765544
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=5.4e-21 Score=194.06 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=214.8
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCChHHH
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYPNAL 268 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 268 (760)
.|.++.+++.+|.++...|++++|+.+|.+++. |.++.+++.+|.++.. .+++++|+.+|.+++... ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 467889999999999999999999999999998 7889999999999999 999999999999999875 89999
Q ss_pred HHHHHHHhh----cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHH----HHhhhhcCchHHhhcHHHHHHHHHHHH
Q 004339 269 SMLGDLELK----NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA----ALRNEKRAPKLEATHLEKAKELYTRVI 340 (760)
Q Consensus 269 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~----~~~~~~~~~~~~~~~~~~A~~~~~~al 340 (760)
+.+|.+|.. .+++.+|+.+|.+++... ++.+++.+|.+ |.. . +++++|+.+|++++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~-~~~~~~~~------------~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGI-YHDGKVVT------------RDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH-HHHCSSSC------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHH-HHcCCCcc------------cCHHHHHHHHHHHH
Confidence 999999999 999999999999999873 78899999999 887 7 99999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004339 341 VQHTSNLYAANGAGVVLAE----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNC 412 (760)
Q Consensus 341 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 412 (760)
... ++.+++.+|.+|.. .+++++|+.+|+++++.. ++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 142 ~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 142 DLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-------DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred hcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 976 68899999999998 999999999999999874 48899999999999 99999999999999
Q ss_pred HhhhcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChhHH
Q 004339 413 LRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
+.. .++.+++.+|.+|.. .+++++|+.+|++++.+.|.+...+
T Consensus 213 ~~~----~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 213 CEL----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHT----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HhC----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 996 338899999999999 9999999999999999998764443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=5.3e-21 Score=187.44 Aligned_cols=217 Identities=22% Similarity=0.151 Sum_probs=169.6
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
.+|.++.+++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|.+++..+|.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46778888899999999999999999999999999999899999999999999999999999999998888888888888
Q ss_pred HHHHc-c-CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 89 GELLI-S-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 89 a~~~~-~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
|.++. . |++..|+.+|.+++. .|.. +....+++.+|.++...|++++|+.+|.+++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------ 141 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPTY--PTPYIANLNKGICSAKQGQFGLAEAYLKRSLA------------------ 141 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STTC--SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 88777 7 778888888887777 2211 11256777777777777777777777777766
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHcC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARN 245 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g 245 (760)
..|.++.+++.+|.++...|++++|+.+|.+++...| .+..++..++.++...|
T Consensus 142 -------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 142 -------------------------AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp -------------------------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred -------------------------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 3455667777777777777777777777777777777 77777777777777777
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 246 NLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 246 ~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
+++.|..++..++..+|+++.+...+
T Consensus 197 ~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 197 NAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 77777777777777777777665544
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.88 E-value=3.9e-21 Score=194.97 Aligned_cols=259 Identities=12% Similarity=0.061 Sum_probs=212.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~ 205 (760)
++..+...|++++|+..|.+++...+ ..+|..+.+++.+|.
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~l~~ 51 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRA---------------------------------------LTDDERAQLLYERGV 51 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSC---------------------------------------CCHHHHHHHHHHHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhccc---------------------------------------ccCchhHHHHHHHHH
Confidence 34445556889999999999987321 124567889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
++...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+
T Consensus 52 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 131 (275)
T 1xnf_A 52 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 004339 286 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365 (760)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 365 (760)
.+|.+++...|. .......++ + +... |+++.|+.+|.+++...|.+...+. ++.++...+++.+
T Consensus 132 ~~~~~a~~~~~~-~~~~~~~~~-~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 132 DDLLAFYQDDPN-DPFRSLWLY-L-AEQK------------LDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQT 195 (275)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHH-H-HHHH------------HCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHH-H-HHHh------------cCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHH
Confidence 999999999887 554443333 3 4455 8999999999999999998876654 7777788888899
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 004339 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 445 (760)
Q Consensus 366 A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 445 (760)
|+..+.+++...|.. .+.++.+++.+|.+|...|++++|+.+|++++.. .|.+ +...+.++..+|++.+|+..|
T Consensus 196 a~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSL-AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT---CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccc-cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh---HHHHHHHHHHHHHHHhhHHHH
Confidence 999999988776510 0123688999999999999999999999999986 3444 233477888999999998887
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=2.7e-21 Score=192.16 Aligned_cols=220 Identities=16% Similarity=0.137 Sum_probs=169.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
.+..++.+|.++...|+++.|+.+|.+++. ..|.++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-------------------------------------------~~~~~~~ 58 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE-------------------------------------------ENKEDAI 58 (243)
T ss_dssp --------------------CCTTHHHHHT-------------------------------------------TCTTCHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-------------------------------------------hCcccHH
Confidence 367788888899999999999999988887 5566788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
+++.+|.++...|++++|+.+|.+++...|.+..++..+|.++...|++++|+.+|.+++...|.++.++..+|.++...
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 88889999999999999999999999888888888899999999999999999999999998888888888899998889
Q ss_pred CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004339 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (760)
|++++|+.+|.+++...|. ...++..+|.+ |... |+++.|+.+|.+++...|.++.++..+|.++.
T Consensus 139 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 204 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELNEN-DTEARFQFGMC-LANE------------GMLDEALSQFAAVTEQDPGHADAFYNAGVTYA 204 (243)
T ss_dssp SCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCc-cHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 9999999999888888776 77888888888 8888 88888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 400 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g 400 (760)
..|++++|+.+|.+++...| +++.++..++.+....+
T Consensus 205 ~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 205 YKENREKALEMLDKAIDIQP-----DHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HTTCTTHHHHHHHHHHHHCT-----TCHHHHHHHTC------
T ss_pred HccCHHHHHHHHHHHHccCc-----chHHHHHHHHHHHhhcc
Confidence 88888888888888888888 77888887776665443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=4e-21 Score=192.35 Aligned_cols=213 Identities=22% Similarity=0.225 Sum_probs=134.3
Q ss_pred CCCCC-chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 9 KPHEF-IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 9 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
.+|.. +.+++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|.+++..+|.++.++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34444 56667777777777777777777777777777777777777777777777777777777777776666666666
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHH--HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 88 LGELLI-SSDTGAALDAFKTART--LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
+|.++. .|++++|+.+|.+++. ..|.. ..++..+|.++...|++++|+.+|.+++.
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~---------------- 169 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPER-----SRVFENLGLVSLQMKKPAQAKEYFEKSLR---------------- 169 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------
Confidence 666655 5566666666666655 33332 45566666666666666666666666654
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 244 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 244 (760)
..|.++.+++.+|.++...|++++|+.+|.+++...|.+..++..++.++...
T Consensus 170 ---------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (252)
T 2ho1_A 170 ---------------------------LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVF 222 (252)
T ss_dssp ---------------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred ---------------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence 23444555666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHHcCCChHHHH
Q 004339 245 NNLQLSIELVNEALKVNGKYPNALS 269 (760)
Q Consensus 245 g~~~~A~~~~~~al~~~p~~~~~~~ 269 (760)
|++++|..++.+++..+|+++.+..
T Consensus 223 g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 223 EDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 6666666666666666666555443
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.88 E-value=4.9e-22 Score=201.65 Aligned_cols=255 Identities=18% Similarity=0.076 Sum_probs=214.6
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
...+.++..+...|++++|+..|++++... |.++.+++.+|.++...|++++|+.+|++++.++|.++.++..+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 85 (275)
T 1xnf_A 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI 85 (275)
T ss_dssp -CGGGSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred ccCcceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 345556666677799999999999999874 4568899999999999999999999999999999999999999999
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhh
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 169 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 169 (760)
++. .|+++.|+.+|.+++.+.|.. +.+++.+|.+|...|++++|+.+|.+++..
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------------------- 140 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLELDPTY-----NYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------------------- 140 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHccCHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------------------
Confidence 998 889999999999999999886 799999999999999999999999999883
Q ss_pred HHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Q 004339 170 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 249 (760)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 249 (760)
.|.+......++. +...|++++|+..|.+++...|.....+. ++.++...++..+
T Consensus 141 -----------------------~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 141 -----------------------DPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQT 195 (275)
T ss_dssp -----------------------CTTCHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHH
T ss_pred -----------------------CCCChHHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHH
Confidence 4455544544443 36669999999999999999988766554 7778888999999
Q ss_pred HHHHHHHHHHHcCC----ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHH
Q 004339 250 SIELVNEALKVNGK----YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 325 (760)
Q Consensus 250 A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~ 325 (760)
|+..+.+++...|. ++.++..+|.++...|++++|+.+|.+++...|.. .. ..+.+ +...
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~---~~~~~-~~~l----------- 259 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-FV---EHRYA-LLEL----------- 259 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-CH---HHHHH-HHHH-----------
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-HH---HHHHH-HHHH-----------
Confidence 99999999877664 36799999999999999999999999999998863 22 23445 6666
Q ss_pred hhcHHHHHHHH
Q 004339 326 ATHLEKAKELY 336 (760)
Q Consensus 326 ~~~~~~A~~~~ 336 (760)
|++.+|+..|
T Consensus 260 -~~~~~a~~~~ 269 (275)
T 1xnf_A 260 -SLLGQDQDDL 269 (275)
T ss_dssp -HHHHHC----
T ss_pred -HHHHhhHHHH
Confidence 8999998887
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.87 E-value=5.1e-20 Score=186.85 Aligned_cols=228 Identities=21% Similarity=0.198 Sum_probs=208.7
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHH
Q 004339 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
+|.++.+++.+|.+++..|++++|+.+|++++. |.++.+++.+|.+|.. .+++++|+.+|++++..+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 578899999999999999999999999999998 8889999999999999 999999999999999885 89999
Q ss_pred HHHHHHHc-----cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccchhhhh
Q 004339 86 IDLGELLI-----SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 86 ~~la~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
+.+|.+|. .+++.+|+.+|++++... .+.+++.+|.+|.. .+++++|+.+|++++..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~------- 143 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK-------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL------- 143 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------
Confidence 99999987 469999999999999873 27999999999999 99999999999999863
Q ss_pred cccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHH
Q 004339 157 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVD 232 (760)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~ 232 (760)
.++.+++.+|.+|.. .+++++|+.+|++++.. .++.
T Consensus 144 --------------------------------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 183 (273)
T 1ouv_A 144 --------------------------------------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSP 183 (273)
T ss_dssp --------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred --------------------------------------CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 256789999999999 99999999999999986 4688
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh----cCCHHHHHHHHHHhhhcCCC
Q 004339 233 AYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 233 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~ 297 (760)
+++.+|.+|.. .+++++|+.+|++++...| +.+++.+|.+|.. .+++++|+.+|.+++...|.
T Consensus 184 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 184 GCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 99999999999 9999999999999999865 8899999999999 99999999999999998765
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=1.5e-20 Score=188.18 Aligned_cols=216 Identities=17% Similarity=0.135 Sum_probs=144.3
Q ss_pred CCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 192 LPWNK-VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 192 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
.+|.. +.+++.+|.++...|++++|+.+|.+++...|.+..++..+|.++...|++++|+.+|.+++...|.++.++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34444 56677777777777777777777777777777777777777777777777777777777777766666666666
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHH
Q 004339 271 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 350 (760)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 350 (760)
+|.++...|++++|+.+|.+++. .+ ..|.+..++
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~-~~---------------------------------------------~~~~~~~~~ 144 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQ-DT---------------------------------------------LYPERSRVF 144 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT-CT---------------------------------------------TCTTHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh-Cc---------------------------------------------cCcccHHHH
Confidence 66666666666666666655555 00 334455556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 430 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 430 (760)
..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+.+|++++.. .|.+..++..++.
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 217 (252)
T 2ho1_A 145 ENLGLVSLQMKKPAQAKEYFEKSLRLNR-----NQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLGIR 217 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 6666666666777777777777766666 55666777777777777777777777777664 4455666777777
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCChhHHh
Q 004339 431 THYEAEQWQDCKKSLLRAIHLAPSNYTLRF 460 (760)
Q Consensus 431 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 460 (760)
++...|++++|..++++++.+.|+++.++.
T Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 218 LAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 777777777777777777777777665543
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=5.6e-21 Score=181.27 Aligned_cols=170 Identities=19% Similarity=0.179 Sum_probs=156.3
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
..+.+|+++|.+|...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 354 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 354 (760)
+...+++..|...+.+++...|. +..++..+|.+ |... |++++|+.+|++++..+|.++.+++.+|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~-~~~~------------g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLV-YDSM------------GEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH-HHHh------------CCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 99999999999999999998887 88888999999 8888 9999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhc
Q 004339 355 VVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
.+|...|++++|+.+|+++++++|
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCc
Confidence 999999999999999999999887
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=6.9e-21 Score=180.68 Aligned_cols=171 Identities=25% Similarity=0.333 Sum_probs=130.7
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
+++.+|+.+|.+|...|+|++|+.+|+++++.+|+++.++..+|.+|...|++++|+..+.+++...|.++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 35667888888888888888888888888888888888888888888888888888888888888888888777777777
Q ss_pred Hc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhH
Q 004339 92 LI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 170 (760)
Q Consensus 92 ~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 170 (760)
+. .+++..|+..+.+++.+.|.+ ..++..+|.+|...|++++|+.+|++++.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~~l~---------------------- 135 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVY-----ADAYYKLGLVYDSMGEHDKAIEAYEKTIS---------------------- 135 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHhCCchhHHHHHHHHHH----------------------
Confidence 66 567777777777777777665 66777777777777777777777777765
Q ss_pred HHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc
Q 004339 171 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 230 (760)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 230 (760)
.+|.++.+++++|.+|..+|++++|+.+|+++++.+|.+
T Consensus 136 ---------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 136 ---------------------IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp ---------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred ---------------------hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 445666677777777777777777777777777766654
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.87 E-value=6.2e-20 Score=179.76 Aligned_cols=214 Identities=14% Similarity=0.028 Sum_probs=199.7
Q ss_pred HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHH
Q 004339 43 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIE 121 (760)
Q Consensus 43 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~ 121 (760)
..|.++.+++.+|.++...|++++|+.+|.+++..+|.++.++..+|.++. .|++..|+.+|.+++.+.|.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~ 77 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-----AE 77 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----hH
Confidence 467789999999999999999999999999999999999999999999998 889999999999999999886 89
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 122 VLNNIGVIHFEK-GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 122 ~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
++..+|.++... |++++|+.+|.+++. .| ..|....++
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~----------------------------------------~~~~~~~~~ 116 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALA-DP----------------------------------------TYPTPYIAN 116 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST----------------------------------------TCSCHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc----------------------------------------CCcchHHHH
Confidence 999999999999 999999999999986 21 456778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CChHHHHHHHHHHhhcC
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG-KYPNALSMLGDLELKND 279 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 279 (760)
+.+|.++...|++++|+.+|.+++...|.++.++..+|.++...|++++|+.++.+++...| .++.++..++.++...|
T Consensus 117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYAT 303 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~ 303 (760)
+++.|..++..++...|. ++.+.
T Consensus 197 ~~~~a~~~~~~~~~~~p~-~~~~~ 219 (225)
T 2vq2_A 197 NAQAAYEYEAQLQANFPY-SEELQ 219 (225)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHH
Confidence 999999999999988887 54443
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.2e-19 Score=187.56 Aligned_cols=226 Identities=9% Similarity=0.040 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HcCCChHHHHHHHHHHhhc
Q 004339 214 VAASVLYRLILFKYQDYVDAYLRLAAIAKA-------RNNL-------QLSIELVNEALK-VNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 278 (760)
.+|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+.+|++++. +.|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5885 899999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCChH-HHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 279 DDWVKAKETFRAASDATDGKDSY-ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~-~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
|+++.|+.+|++++...|. ++. +|..+|.+ +... |+++.|+.+|.+++...|.+..++...+.+.
T Consensus 113 ~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccc-CccHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999887 554 89999999 8888 9999999999999999999988888777765
Q ss_pred HH-cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc-CC-CcHHHHHHHHHHHHH
Q 004339 358 AE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY-YN-TDAQILLYLARTHYE 434 (760)
Q Consensus 358 ~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~-~~~~~~~~la~~~~~ 434 (760)
.. .|+++.|+.+|++++...| .++.+|..+|.++..+|++++|+.+|++++..+. .| ....+|..++.++..
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 43 7999999999999999999 8899999999999999999999999999999632 33 358899999999999
Q ss_pred hccHHHHHHHHHHHHHhCCCChhH
Q 004339 435 AEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 435 ~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
.|+++.|..++.++++..|++...
T Consensus 254 ~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 254 IGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred cCCHHHHHHHHHHHHHHccccccc
Confidence 999999999999999999987644
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=9.7e-20 Score=179.33 Aligned_cols=213 Identities=14% Similarity=0.140 Sum_probs=187.9
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP-DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
.|.++..++.+|.+++..|+|++|+.+|++++..+| .+..+++.+|.++...|++++|+.+|.+++..+|.++.++..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 355678999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccc
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGEEVPI-------EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 160 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 160 (760)
|.++. .|++.+|+..|++++.+.|.+ + .++..+|.++...|++++|+.+|.+++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------ 145 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGN-----ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD------------ 145 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------------
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh------------
Confidence 99999 889999999999999999986 5 6699999999999999999999999987
Q ss_pred hhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 004339 161 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 238 (760)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 238 (760)
.+|. ++.+++++|.+|...| ...+.++..+.+.....+ .+
T Consensus 146 -------------------------------~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~ 187 (228)
T 4i17_A 146 -------------------------------VTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--AS 187 (228)
T ss_dssp -------------------------------SSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HH
T ss_pred -------------------------------cCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HH
Confidence 6778 8899999999997655 345666777766665444 34
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh
Q 004339 239 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277 (760)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 277 (760)
......+.+++|+.+|+++++++|+++.+...++.+...
T Consensus 188 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 188 EKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 445567789999999999999999999999888877543
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.8e-20 Score=193.74 Aligned_cols=251 Identities=12% Similarity=0.046 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHh-cCCCcHHHHHHHHHHHc-c
Q 004339 31 RSALTNFEKVLEIYPDNCETLKALGHIYVQ-------LGQI-------EKAQELLRKAAK-IDPRDAQAFIDLGELLI-S 94 (760)
Q Consensus 31 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~-~ 94 (760)
..|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+.+|++++. ++|++..+|..+|.++. .
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 999999999999 79999999999999988 8
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIE-VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
|+++.|+..|++++.+.|.+ +. +|..+|.++...|++++|+.+|.+++.
T Consensus 113 ~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------------- 162 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFARRAEGIKSGRMIFKKARE------------------------- 162 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSC-----THHHHHHHHHHHHHHHCHHHHHHHHHHHHT-------------------------
T ss_pred CCHHHHHHHHHHHHhccccC-----ccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------------------------
Confidence 89999999999999988875 44 899999999999999999999999997
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ-IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
..|....++...+.+... .|+++.|+.+|++++..+|.++.+|..++.++...|++++|+.
T Consensus 163 ------------------~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 224 (308)
T 2ond_A 163 ------------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp ------------------STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ------------------cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 344556667666666443 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---cC-CChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 253 LVNEALKV---NG-KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 253 ~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
+|++++.. .| ....+|..++.++...|+++.|..++.+++...|....... ++.+ . ..
T Consensus 225 ~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~--~~~~--~--------------~r 286 (308)
T 2ond_A 225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE--TALL--V--------------DR 286 (308)
T ss_dssp HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH--HHHH--H--------------TT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch--HHHH--H--------------HH
Confidence 99999996 44 47789999999999999999999999999999886321111 1111 1 11
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004339 329 LEKAKELYTRVIVQHTSNLYAANGAGV 355 (760)
Q Consensus 329 ~~~A~~~~~~al~~~p~~~~~~~~la~ 355 (760)
.+++.++|.++.+++.||.
T Consensus 287 --------~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 287 --------YKFMDLYPCSASELKALGY 305 (308)
T ss_dssp --------TCBTTBCSSCHHHHHTTTC
T ss_pred --------HHhcccCCCCHHHHHhcCC
Confidence 1456789999999988875
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.86 E-value=7.2e-21 Score=208.87 Aligned_cols=214 Identities=18% Similarity=0.137 Sum_probs=203.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHH
Q 004339 29 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI-EKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKT 106 (760)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~ 106 (760)
.++.|+..+..+....|.++.+++.+|.++...|++ ++|+.+|++++.++|.++.+|+.+|.+|. .|++.+|+.+|.+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477888888888888999999999999999999999 99999999999999999999999999999 8999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhH
Q 004339 107 ARTLLKKAGEEVPIEVLNNIGVIHFEK---------GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 177 (760)
Q Consensus 107 al~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (760)
++.+.|. ..++..+|.+|... |++++|+.+|++++.
T Consensus 163 al~~~p~------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----------------------------- 207 (474)
T 4abn_A 163 ALTHCKN------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ----------------------------- 207 (474)
T ss_dssp HHTTCCC------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHhhCCC------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-----------------------------
Confidence 9999876 58999999999999 999999999999998
Q ss_pred HhhhhhhccCCCccCCcchHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHcCC
Q 004339 178 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQI--------HDTVAASVLYRLILFKYQ---DYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 178 ~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~ 246 (760)
..|.++.+++.+|.+|... |++++|+.+|++++.++| .++.+|+.+|.+|...|+
T Consensus 208 --------------~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 208 --------------MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp --------------HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred --------------hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence 5678899999999999999 999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 004339 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291 (760)
Q Consensus 247 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (760)
+++|+.+|.+++.++|+++.++..++.++...|++++|+..+.++
T Consensus 274 ~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999877554
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.86 E-value=1.6e-17 Score=186.83 Aligned_cols=433 Identities=9% Similarity=0.036 Sum_probs=318.4
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC--
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ---IEKAQELLRKAAKIDP-- 79 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p-- 79 (760)
+.|..+|.+...|..++......+.+..|..+|++++...|.....|...+......|+ +..+..+|++++...|
T Consensus 57 ~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~ 136 (679)
T 4e6h_A 57 DMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGN 136 (679)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCC
T ss_pred HHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCC
Confidence 56778999999999999999999999999999999999999999999999999999999 9999999999999984
Q ss_pred CcHHHHHHHHHHHc-cCCH--------hHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHH---------HcCCHHHHH
Q 004339 80 RDAQAFIDLGELLI-SSDT--------GAALDAFKTARTLLKK-AGEEVPIEVLNNIGVIHF---------EKGEFESAH 140 (760)
Q Consensus 80 ~~~~~~~~la~~~~-~~~~--------~~A~~~~~~al~~~~~-~~~~~~~~~~~~la~~~~---------~~g~~~~A~ 140 (760)
.++..|..+..... .++. ......|++|+...+. + .....+|.....+.. ..++++.+.
T Consensus 137 ~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d--~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R 214 (679)
T 4e6h_A 137 NDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFE--PKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIR 214 (679)
T ss_dssp CCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTC--SSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCccc--ccchHHHHHHHHHHHhccccCcHHHHhHHHHHH
Confidence 57788888776544 3332 3344788888876443 2 123567776666543 345678899
Q ss_pred HHHHHHhcccchhhhhccc--chhhh--hhh--hhHHH-----HHH-hHHhhhhhh----ccCCCccC---------Cc-
Q 004339 141 QSFKDALGDGIWLTLLDSK--TKTYV--IDA--SASML-----QFK-DMQLFHRFE----NDGNHVEL---------PW- 194 (760)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~--~~~~~--~~~--~~~~~-----~~~-~~~~~~~l~----~~~~~~~~---------~p- 194 (760)
.+|.+++.. |........ ...+. ++. ....+ .+. ....+..+. .+...+.. .|
T Consensus 215 ~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~ 293 (679)
T 4e6h_A 215 KLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPK 293 (679)
T ss_dssp HHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCC
T ss_pred HHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCC
Confidence 999999975 311100000 00000 000 00000 000 000111111 11110000 01
Q ss_pred ------chHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHH
Q 004339 195 ------NKVTVLFNLARLLEQIH-------DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-ELVNEALKV 260 (760)
Q Consensus 195 ------~~~~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~ 260 (760)
.....|..+.......+ .......+|++++...|.++.+|+..+..+...|+...|. .+|.+++..
T Consensus 294 ~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~ 373 (679)
T 4e6h_A 294 PNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373 (679)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 11234444443332222 1345678999999999999999999999999999999997 999999999
Q ss_pred cCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC-----------CCC----------ChHHHHHHHHHHHHHHHhhhh
Q 004339 261 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-----------DGK----------DSYATLSLGNWNYFAALRNEK 319 (760)
Q Consensus 261 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------~~~----------~~~~~~~lg~~~y~~~~~~~~ 319 (760)
.|.+..+|..++.+....|+++.|..+|.+++... |.. ...+|+.++.+ ..+.
T Consensus 374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~-erR~----- 447 (679)
T 4e6h_A 374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT-MKRI----- 447 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH-HHHH-----
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH-HHHc-----
Confidence 99999999999999999999999999999999752 321 23356666665 5555
Q ss_pred cCchHHhhcHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 004339 320 RAPKLEATHLEKAKELYTRVIVQ-HTSNLYAANGAGVVLAEKG-QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 397 (760)
Q Consensus 320 ~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~ 397 (760)
|..+.|..+|.+++.. .+....+|...|.+....+ +++.|..+|..+++..| .++..|..++....
T Consensus 448 -------~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 448 -------QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-----TDGEYINKYLDFLI 515 (679)
T ss_dssp -------HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CchHHHHHHHHHHH
Confidence 8899999999999988 4455667777777777665 49999999999999998 78999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 398 AQGNFALAMKMYQNCLRKFYYN-TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
..|+.+.|..+|++++...+.+ ....+|..+...-...|+.+.+..++.++++..|+++.+
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 9999999999999999975432 236788888888889999999999999999999998644
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.86 E-value=4.7e-20 Score=197.18 Aligned_cols=250 Identities=14% Similarity=0.086 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
..++.+|.+++..|++++|+.+|.+++.... .....+..+.++
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-------------------------------------~~~~~~~~a~~~ 146 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLI-------------------------------------FVKDRIEKAEFF 146 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGG-------------------------------------GCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh-------------------------------------hCCCHHHHHHHH
Confidence 3556689999999999999999999987421 011233466889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh------HH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQD-------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NA 267 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~ 267 (760)
+.+|.+|...|+++.|+.+|.+++...+. ...++..+|.++...|++++|+.+|.+++.+.+... .+
T Consensus 147 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 226 (383)
T 3ulq_A 147 FKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRT 226 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999999999999999999999987443 345778888888888888888888888887654322 25
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhC-CCC
Q 004339 268 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TSN 346 (760)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~ 346 (760)
+..+|.+|...|++++|+.+|.+++.+.+.. .+ |..
T Consensus 227 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-------------------------------------------~~~~~~ 263 (383)
T 3ulq_A 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEES-------------------------------------------NILPSL 263 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------------------------------------TCGGGH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------------------------------------ccchhH
Confidence 5556666666666666666666555521000 23 445
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhcCCCcHH
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNTDAQ 423 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~ 423 (760)
+.++..+|.++...|++++|+.+|.+++.+.+....+.....+..+|.+|...|+ +.+|+.++++.-. .+....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~---~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML---YADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC---HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC---HHHHHH
Confidence 5566666666666666666666666666664321111223335566777777776 5566666555411 122355
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
++..+|.+|...|++++|+.+|++++.+..
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 666777777777777777777777776543
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.86 E-value=1.8e-20 Score=200.54 Aligned_cols=231 Identities=10% Similarity=0.070 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC-------
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------- 264 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------- 264 (760)
..++.+|.++...|++++|+.+|.+++.. .+....++..+|.++...|+++.|+.++.+++.+.+..
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 35667999999999999999999999986 22356789999999999999999999999999986544
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 265 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
..++..+|.+|...|++++|+.+|.+++.+.+.... . +
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~----------------------------------~ 221 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--------P----------------------------------Q 221 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------H----------------------------------H
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC--------h----------------------------------H
Confidence 348889999999999999999999999876443110 0 1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc--
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-- 421 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 421 (760)
....++.++|.+|...|++++|+.+|.+++.+.+.... |..+.++.++|.+|..+|++++|+.+|++++...+...+
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 12345677899999999999999999999996442222 478999999999999999999999999999998654343
Q ss_pred -HHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHH
Q 004339 422 -AQILLYLARTHYEAEQ---WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 471 (760)
Q Consensus 422 -~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 471 (760)
...+..+|.+|...|+ +.+|+.+++++ ...|....++..+|.+|...+.
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~ 354 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKN 354 (383)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCC
Confidence 3446789999999999 88888888876 4445556788899999887764
No 64
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=1.5e-18 Score=200.00 Aligned_cols=227 Identities=17% Similarity=0.149 Sum_probs=195.6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
+.+.+|+.+|.++...|++.+|+..|.++ +++..|..+|.++...|++++|+.+|..+.+..+. +.+...+|.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHH
Confidence 45789999999999999999999999775 78899999999999999999999999999988743 3334459999
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 354 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 354 (760)
|.+.+++.. +..|- ... +...+..+|.. ++.. |+++.|+.+|.++ ..|..+|
T Consensus 1177 YAKl~rlee-le~fI-----~~~-n~ad~~~iGd~-le~e------------g~YeeA~~~Y~kA--------~ny~rLA 1228 (1630)
T 1xi4_A 1177 LAKTNRLAE-LEEFI-----NGP-NNAHIQQVGDR-CYDE------------KMYDAAKLLYNNV--------SNFGRLA 1228 (1630)
T ss_pred HHhhcCHHH-HHHHH-----hCC-CHHHHHHHHHH-HHhc------------CCHHHHHHHHHhh--------hHHHHHH
Confidence 999999885 44442 122 45667789999 8888 9999999999996 4788999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 004339 355 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434 (760)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 434 (760)
.+|...|+++.|++++.++ .++.+|...+.++...|+|..|..+... +. .+++.+..++..|..
T Consensus 1229 ~tLvkLge~q~AIEaarKA----------~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii-----v~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKA----------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-----VHADELEELINYYQD 1292 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHh----------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh-----cCHHHHHHHHHHHHH
Confidence 9999999999999999988 3478999999999999999999998774 33 447778899999999
Q ss_pred hccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHH
Q 004339 435 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 471 (760)
Q Consensus 435 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 471 (760)
.|.|++|+.+|++++.++|.+...+..++.+|.+...
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999876554
No 65
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=3.9e-18 Score=196.49 Aligned_cols=108 Identities=15% Similarity=0.228 Sum_probs=87.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHh
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTG 98 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~ 98 (760)
+|.++...|.|++|..+|+++- .+.. .+..++...|++++|++++.++ +.+.+|+.+|.++. .|++.
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 4999999999999999999972 1111 2233344788999999998865 56899999999988 78999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004339 99 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 149 (760)
Q Consensus 99 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 149 (760)
+|+.+|.++ + .+..|..+|.++...|+|++|+.+|..+...
T Consensus 1123 EAIdsYiKA-----d-----D~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1123 EAIDSYIKA-----D-----DPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHHHHHHhc-----C-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999876 2 2788999999999999999999999998864
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=7.7e-20 Score=200.63 Aligned_cols=203 Identities=14% Similarity=0.132 Sum_probs=185.2
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCH-HHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchH
Q 004339 246 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW-VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 324 (760)
Q Consensus 246 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~ 324 (760)
.++.++..+..+....|.++.+++.+|.++...|++ ++|+.+|.+++...|. ...+++.+|.+ |...
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~-~~~~---------- 150 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEV-YWKK---------- 150 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH----------
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHc----------
Confidence 356777777777778888888888999999889998 9999999999888887 78888999998 8888
Q ss_pred HhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 004339 325 EATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK---------GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 325 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~ 395 (760)
|++++|+.+|++++.++|+ ..++..+|.+|... |++++|+.+|.+++.+.| .++.+|+++|.+
T Consensus 151 --g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~ 222 (474)
T 4abn_A 151 --GDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-----LDGRSWYILGNA 222 (474)
T ss_dssp --TCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-----CCHHHHHHHHHH
Confidence 9999999999999999998 78999999999999 999999999999999999 889999999999
Q ss_pred HHHc--------CCHHHHHHHHHHHHhhhcCC---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHH
Q 004339 396 YFAQ--------GNFALAMKMYQNCLRKFYYN---TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 396 ~~~~--------g~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 464 (760)
|..+ |++++|+..|++++.. .| .++.+++.+|.+|..+|++++|+.+|++++.++|+++.++++++.
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999 9999999999999997 56 779999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 004339 465 AMQKFS 470 (760)
Q Consensus 465 ~~~~~~ 470 (760)
++..++
T Consensus 301 ~~~~lg 306 (474)
T 4abn_A 301 LLEFLS 306 (474)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987766
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=5.9e-19 Score=173.68 Aligned_cols=216 Identities=12% Similarity=0.092 Sum_probs=153.6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
.++..++.+|.++...|++++|+..|.+++...| .+..+++.+|.++...|++++|+.+|.+++..+|.++.++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3456666667766666777777777776666666 666666666666666666666666666666666666666666666
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004339 274 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 353 (760)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 353 (760)
+|...|++++|+.+|.+++...|. ++..+..++ .++..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~----------------------------------------~~~~~~ 123 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYA----------------------------------------IYYLKE 123 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHH----------------------------------------HHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHH----------------------------------------HHHHHH
Confidence 666666666666666666665554 322222222 357778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhcCCCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 004339 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 431 (760)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 431 (760)
|.++...|++++|+.+|.+++.+.| . ++.+++++|.+|...|+ ..+.++.... +.++. ...+..
T Consensus 124 g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~--~~~~~--~~~~~~ 189 (228)
T 4i17_A 124 GQKFQQAGNIEKAEENYKHATDVTS-----KKWKTDALYSLGVLFYNNGA-----DVLRKATPLA--SSNKE--KYASEK 189 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSSC-----HHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGT--TTCHH--HHHHHH
T ss_pred hHHHHHhccHHHHHHHHHHHHhcCC-----CcccHHHHHHHHHHHHHHHH-----HHHHHHHhcc--cCCHH--HHHHHH
Confidence 9999999999999999999999998 8 88999999999977653 4456666652 23332 334555
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 432 HYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 432 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
....+.+++|+.+|+++++++|+++.+...++.+
T Consensus 190 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 190 AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 6778999999999999999999999888877765
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=192.45 Aligned_cols=254 Identities=19% Similarity=0.117 Sum_probs=198.5
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--- 77 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 77 (760)
.+|..+.+++.+|.+++..|++++|+.+|++++.. .|..+.++..+|.+|...|++++|+.+|.+++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46777889999999999999999999999999985 5667889999999999999999999999999987
Q ss_pred -----CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc--C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 78 -----DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKA--G-EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 78 -----~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~--~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
.|....++..+|.++. .|++..|+.+|.+++.+.... . .+....++..+|.++...|++++|+.+|.+++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4667788999999998 789999999999999986221 0 011268899999999999999999999999987
Q ss_pred ccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 149 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 228 (760)
Q Consensus 149 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 228 (760)
.... ......|....+++.+|.++...|++++|+.+|.+++...|
T Consensus 182 ~~~~-----------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 182 IYQT-----------------------------------KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp HHHH-----------------------------------TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHH-----------------------------------HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3100 00013566778999999999999999999999999997643
Q ss_pred C---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 004339 229 D---------------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 229 ~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (760)
. ....+..++..+...+.+.+|+..+..++...|..+.++..+|.+|...|++++|+.+|.+++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 1233344445555667777788889999988899999999999999999999999999999998
Q ss_pred cCCC
Q 004339 294 ATDG 297 (760)
Q Consensus 294 ~~~~ 297 (760)
+.|.
T Consensus 307 l~~~ 310 (311)
T 3nf1_A 307 SRKQ 310 (311)
T ss_dssp HHC-
T ss_pred Hhhc
Confidence 7653
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=190.36 Aligned_cols=249 Identities=15% Similarity=0.090 Sum_probs=198.2
Q ss_pred cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-
Q 004339 191 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN- 261 (760)
Q Consensus 191 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 261 (760)
..+|..+.+++.+|.++...|++++|+.+|.+++.. .|....++..+|.++...|++++|+.+|.+++...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 367888899999999999999999999999999985 56778899999999999999999999999999874
Q ss_pred -------CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC-----C--CCChHHHHHHHHHHHHHHHhhhhcCchHHhh
Q 004339 262 -------GKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-----D--GKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327 (760)
Q Consensus 262 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~--~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 327 (760)
|....++..+|.++...|++.+|+.+|.+++... + .....++..+|.+ |... |
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------~ 167 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL-CQNQ------------G 167 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTT------------T
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHc------------C
Confidence 4456689999999999999999999999999864 1 1245678889998 8888 9
Q ss_pred cHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC----CCCCCc------hHHH
Q 004339 328 HLEKAKELYTRVIVQ--------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG----SVFVQM------PDVW 389 (760)
Q Consensus 328 ~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~------~~~~ 389 (760)
+++.|+.+|.+++.. .|....++..+|.+|...|++++|+.+|.+++...|. ...+.. ...+
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 999999999999998 6777789999999999999999999999999987541 111122 2334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 390 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
..++..+...+.+.+|+..+..++.. .+..+.++..+|.+|...|++++|+.+|++++.+.|.
T Consensus 248 ~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 248 EECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 44455556666777788888888873 5566899999999999999999999999999999875
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.82 E-value=1.3e-18 Score=185.48 Aligned_cols=239 Identities=12% Similarity=0.027 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC-------
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKY------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------- 264 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------- 264 (760)
..++.+|..+...|++++|+.+|.+++... |....++..+|.++...|++..|+.++.+++.+.+..
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 367889999999999999999999999764 2356789999999999999999999999999886532
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC-----CChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHH
Q 004339 265 PNALSMLGDLELKNDDWVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 339 (760)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 339 (760)
..++..+|.+|...|++++|+.+|.+++.+.+. ....++..+|.+ |... |+++.|+.+|.++
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~-y~~~------------~~~~~A~~~~~~a 248 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANS-YDRS------------GDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHH------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHC------------CCHHHHHHHHHHH
Confidence 347889999999999999999999999986432 124578899999 9999 9999999999999
Q ss_pred Hh-----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCC---HHHHHHHHHH
Q 004339 340 IV-----QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQN 411 (760)
Q Consensus 340 l~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~ 411 (760)
+. .+|..+.++..+|.++...|++++|+.+|++++.+.+....+.....+..++.++...++ +.+|+.++++
T Consensus 249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99 788888999999999999999999999999999997644334556677888999999998 8888888776
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 412 CLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 412 al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
.-. .+....++..+|.+|...|++++|+.+|++++.+.
T Consensus 329 ~~~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 329 KNL---HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp TTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCC---hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 321 22336788899999999999999999999998764
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.82 E-value=1.1e-19 Score=206.87 Aligned_cols=174 Identities=21% Similarity=0.300 Sum_probs=157.5
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
...|+++.+|+.+|.+|...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.+|++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
+|.+|. .|++++|+.+|++++++.|.+ +.+++++|.+|..+|++++|+.+|++++.
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~-----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~------------------ 139 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAF-----ADAHSNLASIHKDSGNIPEAIASYRTALK------------------ 139 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 999988 789999999999999999886 88999999999999999999999999987
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 229 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 229 (760)
.+|+++.+++++|.++..+|++++|+..|.+++.+.|+
T Consensus 140 -------------------------l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 140 -------------------------LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp -------------------------HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred -------------------------hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 56788889999999999999999999999998877553
No 72
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=4.8e-20 Score=192.06 Aligned_cols=333 Identities=12% Similarity=0.083 Sum_probs=174.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHH
Q 004339 23 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAAL 101 (760)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~ 101 (760)
.....|++++|..+++++ +++.+|..+|.++...|++.+|+..|.++ .++..+..++..+. .|++++|+
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 345778899999999998 34569999999999999999999999764 46668888888877 78999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhh
Q 004339 102 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 181 (760)
Q Consensus 102 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (760)
.++..+.+..+. +.+...++.+|.++|++.++..++.
T Consensus 82 ~yl~~ark~~~~------~~i~~~Li~~Y~Klg~l~e~e~f~~------------------------------------- 118 (449)
T 1b89_A 82 KYLQMARKKARE------SYVETELIFALAKTNRLAELEEFIN------------------------------------- 118 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------------------------------------
T ss_pred HHHHHHHHhCcc------chhHHHHHHHHHHhCCHHHHHHHHc-------------------------------------
Confidence 999999886443 5778889999999999998876662
Q ss_pred hhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 182 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 261 (760)
Q Consensus 182 ~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 261 (760)
.| +..++..+|..+...|.|++|..+|..+ ..|..+|.++..+|++++|+..+.++
T Consensus 119 -----------~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA---- 174 (449)
T 1b89_A 119 -----------GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA---- 174 (449)
T ss_dssp -----------CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH----
T ss_pred -----------CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc----
Confidence 12 3359999999999999999999999977 46899999999999999999999999
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh
Q 004339 262 GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 341 (760)
Q Consensus 262 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 341 (760)
+++.+|...+.++...|+|..|..+...++ . .+.-...+..+ |... |.+++|+.++++++.
T Consensus 175 -~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~----~ad~l~~lv~~-Yek~------------G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 175 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V----HADELEELINY-YQDR------------GYFEELITMLEAALG 235 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T----CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHTT
T ss_pred -CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-h----CHhhHHHHHHH-HHHC------------CCHHHHHHHHHHHhC
Confidence 478999999999999999999988776533 3 33445567777 8887 999999999999999
Q ss_pred hCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 004339 342 QHTSNLYAANGAGVVLA--EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK---- 415 (760)
Q Consensus 342 ~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 415 (760)
+++.+..++..+|.+|. +.++..++++.|...+.+.|--.....+..|..+..+|...++|+.|+..+-.....
T Consensus 236 le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~ 315 (449)
T 1b89_A 236 LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 315 (449)
T ss_dssp STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhh
Confidence 99999999999999998 456788888888665554430000034778999999999999999998865443211
Q ss_pred ------hcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH--HhCC
Q 004339 416 ------FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI--HLAP 453 (760)
Q Consensus 416 ------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p 453 (760)
...+.+.++++.....|. +....++..+..++ .++|
T Consensus 316 ~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~ 359 (449)
T 1b89_A 316 GQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH 359 (449)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH
T ss_pred HHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc
Confidence 113566888888887777 66777888888888 5555
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.82 E-value=5.9e-19 Score=200.94 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=157.1
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
..|+++.++++||.+|..+|++++|+.+|+++++++|++..+++++|.+|...|++++|+..|+++++++|+++.+++.+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHH
Q 004339 272 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 351 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 351 (760)
|.+|...|++++|+.+|++++.+.|. ...+++++|.+ |... |++++|+.+|+++++++|+++.++.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~-~~~~------------g~~~eAi~~~~~Al~l~P~~~~a~~ 149 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASI-HKDS------------GNIPEAIASYRTALKLKPDFPDAYC 149 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCChHHHh
Confidence 99999999999999999999998887 88888899988 8888 8999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 352 GAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
++|.+|...|++++|+..|.+++++.|
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 999999999999999999988888775
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=4.9e-19 Score=178.26 Aligned_cols=215 Identities=17% Similarity=0.131 Sum_probs=147.6
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
..+|.++..++.+|..++..|+|++|+..|++++..+|.+ +.+++.+|.+|+..|++.+|+..|++++..+|+++.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~- 87 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR- 87 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch-
Confidence 3455556666666666666666666666666666666665 566666666666666666666666666666554321
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHhcccchhhhh
Q 004339 85 FIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE--------KGEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 85 ~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
.+.+++.+|.+++. .|++++|+..|.+++...|.....
T Consensus 88 ----------------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 133 (261)
T 3qky_A 88 ----------------------------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV 133 (261)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred ----------------------------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH
Confidence 15677888888888 899999999999999866633211
Q ss_pred cccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHH
Q 004339 157 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---YVDA 233 (760)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~ 233 (760)
...... +. ...+.....++.+|.+|...|++++|+..|++++..+|+ ...+
T Consensus 134 ~~a~~~---------~~-----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a 187 (261)
T 3qky_A 134 DDATQK---------IR-----------------ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDA 187 (261)
T ss_dssp HHHHHH---------HH-----------------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred HHHHHH---------HH-----------------HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHH
Confidence 100000 00 011123344689999999999999999999999999887 5678
Q ss_pred HHHHHHHHHHc----------CCHHHHHHHHHHHHHHcCCChH---HHHHHHHHHhhcCCHHH
Q 004339 234 YLRLAAIAKAR----------NNLQLSIELVNEALKVNGKYPN---ALSMLGDLELKNDDWVK 283 (760)
Q Consensus 234 ~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~ 283 (760)
++.+|.+|... |++++|+.+|.+++..+|+++. +...++.++...++++.
T Consensus 188 ~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 188 LVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999877 8899999999999999999864 55566666666555543
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=3e-18 Score=172.46 Aligned_cols=106 Identities=17% Similarity=0.042 Sum_probs=82.8
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC---h
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY---P 265 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 265 (760)
..|..+..++.+|..+...|++++|+..|.+++..+|.+ ..+++.+|.++...|++++|+..|.+++..+|++ +
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 567778888888888888888888888888888888887 7888888888888888888888888888887754 4
Q ss_pred HHHHHHHHHHhh--------cCCHHHHHHHHHHhhhcCCC
Q 004339 266 NALSMLGDLELK--------NDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 266 ~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~ 297 (760)
.+++.+|.++.. .|++.+|+..|.+++...|.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 577777887777 55666666666666555554
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.81 E-value=3.3e-18 Score=182.42 Aligned_cols=238 Identities=16% Similarity=0.085 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
..++.+|..++..|++++|+.+|.+++...+ .+...+..+.++
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-------------------------------------~~~~~~~~a~~~ 144 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELP-------------------------------------FVSDDIEKAEFH 144 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGG-------------------------------------GCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHh-------------------------------------hCCChHHHHHHH
Confidence 4567889999999999999999999987421 111234567789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------ChHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQD-------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK------YPNA 267 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~ 267 (760)
+.+|.+|...|++..|+.++.+++...+. ...++..+|.++...|++++|+.+|.+++.+.+. ...+
T Consensus 145 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 224 (378)
T 3q15_A 145 FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAIS 224 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999977542 3557889999999999999999999999987532 2347
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhh-----cCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 268 LSMLGDLELKNDDWVKAKETFRAASD-----ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
+..+|.+|...|++++|+.+|.+++. ..|. ...++..+|.+ |... |+++.|+.+|++++.+
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWT-LCKA------------GQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHH
Confidence 88999999999999999999999998 5555 47888999999 9888 9999999999999987
Q ss_pred C-----CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 343 H-----TSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 343 ~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
. |.....+..++.++...|+ +.+|+.++.+... .| ....++..+|.+|...|++++|+.+|++++.
T Consensus 291 ~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-~~-----~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 291 ITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HA-----YIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-HH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-hh-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 4445567778888888888 7888888776321 22 4567888999999999999999999999988
Q ss_pred h
Q 004339 415 K 415 (760)
Q Consensus 415 ~ 415 (760)
.
T Consensus 365 ~ 365 (378)
T 3q15_A 365 A 365 (378)
T ss_dssp H
T ss_pred H
Confidence 5
No 77
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.80 E-value=8.8e-18 Score=170.17 Aligned_cols=248 Identities=13% Similarity=-0.032 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDT-VAASVLYRLILFKYQDYVDAYLRLAAIAKARN--NLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 199 ~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
..+...+.....|.+ ++|+.++..+|.++|.+..+|+..+.++..+| .+++++.++..++..+|.+..+|...+.++
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 334444444555555 69999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ----hhc---CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHH--HHHHHHHHHHhhCCCC
Q 004339 276 ----LKN---DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE--KAKELYTRVIVQHTSN 346 (760)
Q Consensus 276 ----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~ 346 (760)
... +++.+++.++.+++...|. +..+|...+.+ +... +.++ .++.++.+++..+|.|
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~v-l~~l------------~~~~~~~EL~~~~~~i~~d~~N 179 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWL-VDTF------------DLHNDAKELSFVDKVIDTDLKN 179 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCTTCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHh------------cccChHHHHHHHHHHHHhCCCC
Confidence 666 7899999999999999998 89999999988 7777 8887 9999999999999999
Q ss_pred HHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhh-cC
Q 004339 347 LYAANGAGVVLAEKGQ------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL-AMKMYQNCLRKF-YY 418 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~-~~ 418 (760)
..+|...+.++...|. +++++.++.+++..+| .+..+|+.++.++...|+... ...++.+++..- ..
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-----~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-----QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-----SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-----CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 9999999999999887 9999999999999999 899999999999999998655 445666666541 13
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCChhHHhhHHHH
Q 004339 419 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIH-LAPSNYTLRFDAGVA 465 (760)
Q Consensus 419 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~ 465 (760)
+.++.++..++.+|.+.|+.++|+.+|..+.. ++|-....|...+..
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 66799999999999999999999999999997 899988888766543
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.80 E-value=1.3e-17 Score=177.50 Aligned_cols=316 Identities=12% Similarity=0.025 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG 127 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 127 (760)
..++..+|.++...|+++.|+.++++++...|...... ...++..+|
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------------~~~~~~~l~ 60 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS---------------------------------RIVATSVLG 60 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH---------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhH---------------------------------HHHHHHHHH
Confidence 35566777777778888888888888777766432110 022344445
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHH
Q 004339 128 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 207 (760)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~ 207 (760)
.++...|+++.|+..+.+++...+... .......++.++|.++
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHD-------------------------------------VWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcC-------------------------------------cHHHHHHHHHHHHHHH
Confidence 555555555555555555544221000 0001123344555555
Q ss_pred HHcCCHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-----ChHHHHHHHHH
Q 004339 208 EQIHDTVAASVLYRLILFKY--------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK-----YPNALSMLGDL 274 (760)
Q Consensus 208 ~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~ 274 (760)
...|++++|+.+|.+++... |....++..+|.++...|++++|..++.+++...+. ...++..+|.+
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 55555555555555555443 223344455555556666666666666666555443 22456667777
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCC-ChHHHH-----HHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC--
Q 004339 275 ELKNDDWVKAKETFRAASDATDGK-DSYATL-----SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN-- 346 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~-----~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 346 (760)
+...|++++|..++.+++...+.. ....+. .++.+ +... |+++.|..++.+++...|..
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY-WQMT------------GDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH-HHHC------------CCHHHHHHHHHhCCCCCCCcch
Confidence 777777777777777766553221 111111 23333 4455 99999999999998876643
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHH
Q 004339 347 --LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 423 (760)
Q Consensus 347 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 423 (760)
..++..+|.++...|++++|+..+.+++...+....+ ....++..+|.++...|++++|...|.+++.......
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g--- 327 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG--- 327 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc---
Confidence 3356788999999999999999999998876521111 1235788889999999999999999999988642211
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
....+...| ......+...+...|.+
T Consensus 328 ----~~~~~~~~g--~~~~~ll~~~~~~~~~~ 353 (373)
T 1hz4_A 328 ----FISHFVIEG--EAMAQQLRQLIQLNTLP 353 (373)
T ss_dssp ----CCHHHHTTH--HHHHHHHHHHHHTTCSC
T ss_pred ----HHHHHHHcc--HHHHHHHHHHHhCCCCc
Confidence 112233344 56677788888887763
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.79 E-value=2.1e-16 Score=168.08 Aligned_cols=311 Identities=13% Similarity=0.028 Sum_probs=236.3
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
...+++.+|.+++..|+++.|+.++++++...|... .++..+|.++...|+++.|+..|.+++.+.|.....+.
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 91 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY- 91 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH-
Confidence 356778899999999999999999999999887652 25677788888888888888888887776543221110
Q ss_pred HHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 88 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 88 la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
...++..+|.++...|++++|+.+|.+++...+...
T Consensus 92 -------------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~------------- 127 (373)
T 1hz4_A 92 -------------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH------------- 127 (373)
T ss_dssp -------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------
T ss_pred -------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-------------
Confidence 145678899999999999999999999987432000
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-----cHHHHHHHHHHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-----YVDAYLRLAAIAK 242 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~ 242 (760)
....|....++.++|.++...|++++|..++.+++...+. ...++..+|.++.
T Consensus 128 ----------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 128 ----------------------LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp ----------------------CTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred ----------------------cccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 0012456678889999999999999999999999988764 3567889999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCC--ChHHHH-----HHHHHHhhcCCHHHHHHHHHHhhhcCCCCC---hHHHHHHHHHHHH
Q 004339 243 ARNNLQLSIELVNEALKVNGK--YPNALS-----MLGDLELKNDDWVKAKETFRAASDATDGKD---SYATLSLGNWNYF 312 (760)
Q Consensus 243 ~~g~~~~A~~~~~~al~~~p~--~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~lg~~~y~ 312 (760)
..|++++|+.++.+++.+.+. .+..+. .++.++...|++..|..++..++...+... ...+..++.+ +.
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~-~~ 264 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA-QI 264 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH-HH
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH-HH
Confidence 999999999999999987433 222221 345568899999999999999998765421 2356778888 88
Q ss_pred HHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCch
Q 004339 313 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 386 (760)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 386 (760)
.. |++++|...+.+++...+. ...++..+|.++...|++++|...|.+++.+.+ .
T Consensus 265 ~~------------g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~-----~-- 325 (373)
T 1hz4_A 265 LL------------GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN-----R-- 325 (373)
T ss_dssp HT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----H--
T ss_pred Hc------------CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-----c--
Confidence 87 9999999999999876442 224788899999999999999999999998875 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 387 DVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
......+...| .....++..++..
T Consensus 326 ---~g~~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 326 ---TGFISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp ---HCCCHHHHTTH--HHHHHHHHHHHHT
T ss_pred ---ccHHHHHHHcc--HHHHHHHHHHHhC
Confidence 11112233333 5666777777764
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.78 E-value=4.4e-16 Score=175.11 Aligned_cols=435 Identities=11% Similarity=0.010 Sum_probs=294.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCC---HhHHHHHHH
Q 004339 30 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSD---TGAALDAFK 105 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~---~~~A~~~~~ 105 (760)
...-+..|++.+..+|.+...|..++..+...+.+..+..+|++++...|.....|..++.... .++ +..+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 4456778999999999999999999999999999999999999999999999999999988866 567 999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH----HH----HHHHHHHHhcccch-hhhhcccchhhhhhhhhH---HHH
Q 004339 106 TARTLLKKAGEEVPIEVLNNIGVIHFEKGEF----ES----AHQSFKDALGDGIW-LTLLDSKTKTYVIDASAS---MLQ 173 (760)
Q Consensus 106 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~---~~~ 173 (760)
+++...|.. ..+.+|..........++. .. ....|+.++..... ...... .....+..... ...
T Consensus 128 Ral~~~~~~---~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~-iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 128 RCLSKELGN---NDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQ-FWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHTCSSSCC---CCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHH-HHHHHHHHHHTCCCCSH
T ss_pred HHHHhcCCC---CCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchH-HHHHHHHHHHhccccCc
Confidence 999988311 1277888887776666554 33 44778887753221 110000 00000000000 000
Q ss_pred H-HhHHhhhhhhccCCCccCCcchH-HHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHH-------cCCc-
Q 004339 174 F-KDMQLFHRFENDGNHVELPWNKV-TVLFNLARL-------------LEQIHDTVAASVLYRLILFK-------YQDY- 230 (760)
Q Consensus 174 ~-~~~~~~~~l~~~~~~~~~~p~~~-~~~~~la~~-------------~~~~g~~~~A~~~~~~~l~~-------~p~~- 230 (760)
+ ....+...-..+...+..+.... .+|...... -.....|..|...|...-.. .|..
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 0 00011111111222332222211 222111111 11122344555555442211 1111
Q ss_pred ------------------HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 231 ------------------VDAYLRLAAIAKARN-------NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 231 ------------------~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
...|..........+ .......+|++++...|.++.+|+..+.++...|+...|+
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 234444444333222 1234568899999999999999999999999999999997
Q ss_pred -HHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh-----------CCC--------
Q 004339 286 -ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-----------HTS-------- 345 (760)
Q Consensus 286 -~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~p~-------- 345 (760)
.+|.+++...|. ....|+.++.+ .... |+++.|..+|++++.. .|.
T Consensus 364 r~il~rAi~~~P~-s~~Lwl~~a~~-ee~~------------~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~ 429 (679)
T 4e6h_A 364 TKYLKLGQQCIPN-SAVLAFSLSEQ-YELN------------TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQL 429 (679)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHH-HHHh------------CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhh
Confidence 999999998887 77778888887 7776 9999999999999875 253
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhcCCCc
Q 004339 346 ---NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN-FALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 346 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 421 (760)
...+|..++.+..+.|..+.|..+|.+|+...|. ....+|...|.+....++ ++.|..+|+.+++.+ |.+
T Consensus 430 ~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~----~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~ 503 (679)
T 4e6h_A 430 KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL----VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG----SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTC
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCc
Confidence 3457888888888999999999999999987331 346788888888777764 999999999999986 456
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---ChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS---NYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVF 498 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~ 498 (760)
+.++..++......|+.+.|..+|++|+...|+ ...+|..+. .++...+.++.+.+++
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~-------------------~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI-------------------FFESKVGSLNSVRTLE 564 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH-------------------HHHHHTCCSHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------------HHHHHcCCHHHHHHHH
Confidence 788888899999999999999999999999884 222222221 3444445566666777
Q ss_pred HHHhhcCCC
Q 004339 499 SHLSAASNL 507 (760)
Q Consensus 499 ~~l~~~~~~ 507 (760)
.++....|.
T Consensus 565 ~R~~~~~P~ 573 (679)
T 4e6h_A 565 KRFFEKFPE 573 (679)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHhCCC
Confidence 666665544
No 81
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.77 E-value=4.2e-17 Score=165.21 Aligned_cols=241 Identities=10% Similarity=-0.035 Sum_probs=213.9
Q ss_pred hhHHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH--
Q 004339 18 YGLGQVQLKLGDF-RSALTNFEKVLEIYPDNCETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRDAQAFIDLGELL-- 92 (760)
Q Consensus 18 ~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~-- 92 (760)
+......+..|.+ ++|+.++.++|.++|++..+|+..+.++..+| .+.+++.++..++..+|.+..+|...+.++
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 3344444566666 68999999999999999999999999999999 999999999999999999999999999988
Q ss_pred --c-c---CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHhcccchhhhhcccchhhh
Q 004339 93 --I-S---SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE--SAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 93 --~-~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
. . +++.+++.++.+++..+|++ ..+|+..+.++...|.++ +++.++.+++.
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkn-----y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---------------- 174 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKN-----HHVWSYRKWLVDTFDLHNDAKELSFVDKVID---------------- 174 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH----------------
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcccChHHHHHHHHHHHH----------------
Confidence 5 4 68999999999999999997 899999999999999998 99999999997
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHcCCcHHHHHHHH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD------TVAASVLYRLILFKYQDYVDAYLRLA 238 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~la 238 (760)
.+|.+..+|...+.++...+. +++++.++.+++..+|.+..+|..++
T Consensus 175 ---------------------------~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~ 227 (306)
T 3dra_A 175 ---------------------------TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL 227 (306)
T ss_dssp ---------------------------HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred ---------------------------hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 677899999999999999987 99999999999999999999999999
Q ss_pred HHHHHcCCHHH-HHHHHHHHHHHc---CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh-cCCCCChHHHHHHH
Q 004339 239 AIAKARNNLQL-SIELVNEALKVN---GKYPNALSMLGDLELKNDDWVKAKETFRAASD-ATDGKDSYATLSLG 307 (760)
Q Consensus 239 ~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~lg 307 (760)
.++...|+... ...++.+++.+. |.++.++..++.+|...|+.++|+.+|..+.. ..|- ....|...+
T Consensus 228 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi-r~~yW~~~~ 300 (306)
T 3dra_A 228 GIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI-RSNFWDYQI 300 (306)
T ss_dssp HHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG-GHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH-HHHHHHHHH
Confidence 99999998655 455777777766 88999999999999999999999999999987 4554 545544433
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.77 E-value=1.1e-17 Score=171.21 Aligned_cols=259 Identities=15% Similarity=0.069 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHH
Q 004339 32 SALTNFEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTA 107 (760)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~a 107 (760)
+|..++.++-+.-+.....+ .++.. +++++|+.+|.++ |.+|. .|++++|+.+|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46677777777766543222 11232 2588999998887 44555 78999999999999
Q ss_pred HHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhcc
Q 004339 108 RTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 186 (760)
Q Consensus 108 l~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (760)
+.+.+..+.+. .+.++.++|.+|..+|++++|+.+|.+++.+.+..
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--------------------------------- 110 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--------------------------------- 110 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---------------------------------
Confidence 99977653221 25789999999999999999999999999753210
Q ss_pred CCCccCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 187 GNHVELPWNKVTVLFNLARLLEQI-HDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 187 ~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
...+....++.++|.+|... |++++|+.+|++++.+.|.. ..++..+|.++...|++++|+.+|++++.
T Consensus 111 ----g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 111 ----GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 01112356889999999996 99999999999999988743 56789999999999999999999999999
Q ss_pred HcCCChH-------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChH----HHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 260 VNGKYPN-------ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY----ATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 260 ~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
+.|.+.. ++..+|.++...|++..|+.+|.+++.+.|..... .+..++.. |... ..+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~-~~~~----------~~~~ 255 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA-VNEG----------DSEQ 255 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHH-HHTT----------CTTT
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH-HHcC----------CHHH
Confidence 9987653 67889999999999999999999999988763211 12223333 2110 1177
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 329 LEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 329 ~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
+..|+..|.+++.++|.+..++..+-..+
T Consensus 256 ~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 99999999999998887766665554443
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.76 E-value=1.1e-17 Score=161.92 Aligned_cols=169 Identities=11% Similarity=0.096 Sum_probs=144.7
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA----------------LGHIYVQLGQIEKAQELLRKAAK 76 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 76 (760)
++..++..|..++..|+|++|+.+|++++..+|+++.+++. +|.+|...|++++|+..|++++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHhcccchh
Q 004339 77 IDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF--ESAHQSFKDALGDGIWL 153 (760)
Q Consensus 77 ~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~ 153 (760)
++|+++.+++.+|.++. .|+++.|+.+|++++.+.|.+ +.+++.+|.+|+..|.. ..+...|..++.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~----- 152 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-----LAANIFLGNYYYLTAEQEKKKLETDYKKLSS----- 152 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-----
Confidence 99999999999999988 889999999999999999987 89999999998877643 445555555543
Q ss_pred hhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc
Q 004339 154 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 230 (760)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 230 (760)
.. ....+++.+|.++...|++++|+.+|++++.++|+.
T Consensus 153 --------------------------------------~~-~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 153 --------------------------------------PT-KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp --------------------------------------CC-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred --------------------------------------CC-chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 11 233467888999999999999999999999999864
No 84
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.76 E-value=4.1e-18 Score=195.34 Aligned_cols=130 Identities=11% Similarity=0.027 Sum_probs=62.5
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 004339 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL--------EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 81 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (760)
+|.++.+++..| +..|++++|+..|++++ ..+|++..+++.+|.++...|++++|+..|++++.++|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 344444444433 44455555555555555 4445555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 82 AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 82 ~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
+.+|+.+|.++. .|++++|+..|++++.+.|.+ +.+++++|.+|...|++++ +..|++++.
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----~~~~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-----LAPKLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-----SHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 444444444444 444444444444444444443 3444444444444444444 444444443
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.76 E-value=1.8e-17 Score=169.77 Aligned_cols=253 Identities=13% Similarity=0.053 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHcc--C-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 66 KAQELLRKAAKIDPRDAQAFIDLGELLIS--S-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 142 (760)
Q Consensus 66 ~A~~~~~~al~~~p~~~~~~~~la~~~~~--~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 142 (760)
+|..++.++-+.-+.....+ .++.. . +++.|+.+|.++ |.+|...|++++|+.+
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~----~~~~~~~~~~~~~A~~~~~~a-------------------~~~~~~~g~~~~A~~~ 59 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM----KLFSGSDSYKFEEAADLCVQA-------------------ATIYRLRKELNLAGDS 59 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH----HHHSCCSHHHHHHHHHHHHHH-------------------HHHHHHTTCTHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc----hhcCCCCCccHHHHHHHHHHH-------------------HHHHHHcCCHHHHHHH
Confidence 46677777776666432222 11222 2 478888777765 5567889999999999
Q ss_pred HHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 143 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 222 (760)
Q Consensus 143 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (760)
|.+++.+.+.. ...+..+.++.++|.+|..+|++++|+.+|.+
T Consensus 60 ~~~al~~~~~~-------------------------------------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 102 (292)
T 1qqe_A 60 FLKAADYQKKA-------------------------------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102 (292)
T ss_dssp HHHHHHHHHHT-------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-------------------------------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99998743210 01223467899999999999999999999999
Q ss_pred HHHHcCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcCCC------hHHHHHHHHHHhhcCCHHHHHHHHH
Q 004339 223 ILFKYQDY------VDAYLRLAAIAKAR-NNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFR 289 (760)
Q Consensus 223 ~l~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 289 (760)
++.+.|.. ..++..+|.+|... |++++|+.+|++++.+.|.. ..++..+|.++...|++++|+.+|.
T Consensus 103 Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 182 (292)
T 1qqe_A 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99987643 56899999999996 99999999999999998754 4578899999999999999999999
Q ss_pred HhhhcCCCCCh------HHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHH
Q 004339 290 AASDATDGKDS------YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA-----ANGAGVVLA 358 (760)
Q Consensus 290 ~al~~~~~~~~------~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~ 358 (760)
+++...|.... .+++.+|.+ |... |++..|+.+|++++.++|....+ +..++..+.
T Consensus 183 ~al~~~~~~~~~~~~~~~~~~~lg~~-~~~~------------g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 183 KLIKSSMGNRLSQWSLKDYFLKKGLC-QLAA------------TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HHHHTTSSCTTTGGGHHHHHHHHHHH-HHHT------------TCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 99998876432 267888998 8888 99999999999999999986653 445556554
Q ss_pred --HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 004339 359 --EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 359 --~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~ 396 (760)
..+++.+|+..|.+++.++| ....++..+-..+
T Consensus 250 ~~~~~~~~~A~~~~~~~~~l~~-----~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDNFMRLDK-----WKITILNKIKESI 284 (292)
T ss_dssp TTCTTTHHHHHHHHTTSSCCCH-----HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhccCCccHH-----HHHHHHHHHHHHh
Confidence 45789999999999888777 5555555544433
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.76 E-value=1.3e-17 Score=191.32 Aligned_cols=201 Identities=13% Similarity=0.076 Sum_probs=178.9
Q ss_pred cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 191 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL--------FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 262 (760)
Q Consensus 191 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 262 (760)
..+|.++.+++..+ ...|++++|+..|.+++ ..+|.+..+++.+|.++...|++++|+..|.+++..+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 46778888887777 78899999999999999 88999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 263 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 263 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
+++.+++.+|.++...|++++|+..|++++.+.|. +..+++.+|.+ |... |++++ +.+|++++.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~-~~~~------------g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAAT-AELA------------GNTDE-HKFYQTVWST 529 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHH-HHHH------------TCCCT-TCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH-HHHc------------CChHH-HHHHHHHHHh
Confidence 99999999999999999999999999999999998 88999999999 9999 99999 9999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA-MKMYQNCLR 414 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~ 414 (760)
+|++..+++++|.++...|++++|+..|++++.++| .++.+++++|.+++..+...++ ...+..++.
T Consensus 530 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 597 (681)
T 2pzi_A 530 NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSR-----HFTTARLTSAVTLLSGRSTSEVTEEQIRDAAR 597 (681)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST-----THHHHHHHHHHHTC-------CCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc-----ccHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998 8899999999999887764443 344444443
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.75 E-value=1e-16 Score=151.26 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 265 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
..++..+|.++...|++.+|+..|.+++...|. ...++..+|.+ +... |+++.|+.+|.+++...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~~~~~~~ 73 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIA-YVKT------------GAVDRGTELLERSLADAP 73 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCC
Confidence 346677788888888888888888888877766 67777888888 7777 888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHH
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 424 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 424 (760)
.++.++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+.+|++++.. .|.++.+
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 146 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-----INFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKV 146 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHH
Confidence 8888888888888888888888888888888887 67888888888888888888888888888886 5666888
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 425 LLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 425 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
+..+|.++...|++++|+.+|.+++.+.|++...
T Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 147 HRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 8888888888888888888888888888876543
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.74 E-value=1.8e-16 Score=153.36 Aligned_cols=177 Identities=19% Similarity=0.213 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+..++..|..++..|++++|+.+|.+++...| .++.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------------------------------------------~~~~~ 40 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-------------------------------------------DRTEM 40 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------------------------------CChHH
Confidence 67788999999999999999999999998544 44444
Q ss_pred HHH----------------HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 004339 200 LFN----------------LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 263 (760)
Q Consensus 200 ~~~----------------la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 263 (760)
++. +|.+|...|++++|+..|.+++..+|.++.+++.+|.++...|++++|+.+|++++.++|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 41 YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 444 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhcCC--HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh
Q 004339 264 YPNALSMLGDLELKNDD--WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 341 (760)
Q Consensus 264 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 341 (760)
++.+++.+|.+|...|. ...+...|..++.. .....+++.+|.+ +... |++++|+.+|++++.
T Consensus 121 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~-~~~~------------~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKMQYARYRDGLS-KLFT------------TRYEKARNSLQKVIL 185 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHHHHHHHHHHHH-HHHH------------HTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--CchhHHHHHHHHH-HHHc------------cCHHHHHHHHHHHHH
Confidence 99999999999987764 45667777776543 2244567788888 7778 999999999999999
Q ss_pred hCCCCHHHHHHHHH
Q 004339 342 QHTSNLYAANGAGV 355 (760)
Q Consensus 342 ~~p~~~~~~~~la~ 355 (760)
++|+. .+...+..
T Consensus 186 l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 186 RFPST-EAQKTLDK 198 (208)
T ss_dssp TSCCH-HHHHHHHH
T ss_pred hCCCH-HHHHHHHH
Confidence 99974 33334444
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.74 E-value=4.5e-18 Score=155.00 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=128.4
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
|++++|+..|++++..+|.++.+++.+|.+|...|++++|+.+|.+++.++| .++.+|+++|.+|..+|++++|+
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-----RDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHH-HHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKS-LLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
..|++++.. +|.++.+++.+|.+|...|++.+|... +++|++++|+++.++..++.++...
T Consensus 86 ~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 86 ECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 999999997 788899999999999999999887765 5999999999999998888876544
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.74 E-value=1.5e-16 Score=150.17 Aligned_cols=170 Identities=11% Similarity=0.041 Sum_probs=128.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
....+++.+|.++...|++++|+.+|.+++...|.+..++..+|.++...|++++|+.++.+++...|.++.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34567777888888888888888888888888888888888888888888888888888888888888777777777777
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 354 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 354 (760)
+...|++++|+.+|.+++...|. ...++..+|.+ +... |+++.|+.+|.+++...|.++.++..+|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVA-LDNL------------GRFDEAIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHH-HHHc------------CcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 77777777777777777777665 56666667766 6666 7777777777777777777777777777
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhc
Q 004339 355 VVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
.++...|++++|+.+|.+++...|
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 777777777777777777777666
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.73 E-value=2.1e-17 Score=167.74 Aligned_cols=235 Identities=20% Similarity=0.118 Sum_probs=181.9
Q ss_pred HHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHH
Q 004339 25 LKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAFIDL 88 (760)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 88 (760)
...|++++|+.+|++++.. .|..+.++..+|.+|...|++++|+.+|.+++.+ .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777888888887763 2556889999999999999999999999999987 46677889999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGE---EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
|.++. .|+++.|+.+|.+++.+...... +....++..+|.+|...|++++|+.+|.+++.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------ 159 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT------------ 159 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------
Confidence 99998 88999999999999998522110 112788999999999999999999999999873100
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------cCCcHHHHH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK---------YQDYVDAYL 235 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~ 235 (760)
......|....++..+|.++...|++++|+.+|.+++.. .+....++.
T Consensus 160 -----------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 216 (283)
T 3edt_B 160 -----------------------RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWM 216 (283)
T ss_dssp -----------------------HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHH
T ss_pred -----------------------hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 000135667889999999999999999999999999987 345556677
Q ss_pred HHHHHHHHcCCHHH------HHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 236 RLAAIAKARNNLQL------SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 236 ~la~~~~~~g~~~~------A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
.++.++...+.... +..++..+....|..+.++..+|.+|...|++++|+.+|.+++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 217 HAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777765554333 333333333334555678999999999999999999999999875
No 92
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=6.2e-18 Score=176.22 Aligned_cols=336 Identities=12% Similarity=0.053 Sum_probs=187.3
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
.+.+|..+|.++...|++.+|+..|.++ .++.++..++.++...|++++|+.+++.+++..+ ++.+...++.+|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y 104 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHH
Confidence 3468999999999999999999999764 5677999999999999999999999999988644 467778888888
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHH
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 171 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 171 (760)
. .|++..+...+.. |+ ..+|..+|..++..|.|++|+.+|.++
T Consensus 105 ~Klg~l~e~e~f~~~-----pn------~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------------------- 148 (449)
T 1b89_A 105 AKTNRLAELEEFING-----PN------NAHIQQVGDRCYDEKMYDAAKLLYNNV------------------------- 148 (449)
T ss_dssp ----CHHHHTTTTTC-----C----------------------CTTTHHHHHHHT-------------------------
T ss_pred HHhCCHHHHHHHHcC-----Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHh-------------------------
Confidence 8 7899998877752 32 469999999999999999999999764
Q ss_pred HHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHH
Q 004339 172 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 251 (760)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 251 (760)
..+..+|.++..+|+++.|+..|.++ .++.+|..++.++...|++..|.
T Consensus 149 --------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 149 --------------------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp --------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHH
Confidence 35788999999999999999999998 47899999999999999999997
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHH
Q 004339 252 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 331 (760)
Q Consensus 252 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 331 (760)
.+...++ . ++.-...++.+|...|.+++|+.+|+.++.+.+. ....+..+|.+ |..- ..+++.+
T Consensus 198 ~~~l~L~-~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a-h~~~ftel~il-~~ky----------~p~k~~e 261 (449)
T 1b89_A 198 MCGLHIV-V---HADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAIL-YSKF----------KPQKMRE 261 (449)
T ss_dssp HTTTTTT-T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-CHHHHHHHHHH-HHTT----------CHHHHHH
T ss_pred HHHHHHH-h---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH-HHHHHHHHHHH-HHhc----------CHHHHHH
Confidence 7766522 3 4444557889999999999999999999999866 78888888877 6543 1178888
Q ss_pred HHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------------hcCCCCCCchHHHHHHHH
Q 004339 332 AKELYTRVIVQHT-----SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA------------ASGSVFVQMPDVWINLAH 394 (760)
Q Consensus 332 A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~~~~~~la~ 394 (760)
.++.|...+.+.| .+...|..+..+|...++|+.|+......... .+ .+.++++....
T Consensus 262 hl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv-----~n~elyYkai~ 336 (449)
T 1b89_A 262 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV-----ANVELYYRAIQ 336 (449)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHC-----SSTHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhch-----hHHHHHHHHHH
Confidence 8888888888777 78889999999999999999998765443211 22 67888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 395 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
.|+ +....++..+..++.. .-+.. .....+.+.|...-...++..+..
T Consensus 337 fyl--~~~p~~l~~ll~~l~~--~ld~~----r~v~~~~~~~~l~l~~~yl~~v~~ 384 (449)
T 1b89_A 337 FYL--EFKPLLLNDLLMVLSP--RLDHT----RAVNYFSKVKQLPLVKPYLRSVQN 384 (449)
T ss_dssp HHH--HHCGGGHHHHHHHHGG--GCCHH----HHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred HHH--hcCHHHHHHHHHHHHh--ccCcH----HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 887 5556677777777752 11222 222334666777777777755543
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.73 E-value=2.4e-16 Score=154.53 Aligned_cols=210 Identities=11% Similarity=0.098 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH---HHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 269 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 269 (760)
.+..++.+|..+...|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|.+++..+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45788999999999999999999999999998875 478999999999999999999999999999998875 788
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHH
Q 004339 270 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 349 (760)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 349 (760)
.+|.++...+.. .+ ..+..++.. +... |++++|+..|++++..+|++..+
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~-~~~~------------~~~~~A~~~~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRS-DRDP------------QQARAAFSDFSKLVRGYPNSQYT 132 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CC------------HHHHHHHHHHHHHHTTCTTCTTH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchh-hcCc------------HHHHHHHHHHHHHHHHCcCChhH
Confidence 899888765532 11 112234444 4444 89999999999999999998876
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 428 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 428 (760)
+..+..+.. +.+ ......+.+|.+|+..|++.+|+..|++++..+|..+. +.+++.+
T Consensus 133 ~~a~~~l~~-----------------~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 190 (225)
T 2yhc_A 133 TDATKRLVF-----------------LKD-----RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM 190 (225)
T ss_dssp HHHHHHHHH-----------------HHH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------HHH-----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHH
Confidence 543222111 111 22345578899999999999999999999998654332 5789999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 429 ARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 429 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
|.+|..+|++++|+..++.+....|++..
T Consensus 191 ~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 191 ENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999999999999999999998887754
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=2.4e-17 Score=150.17 Aligned_cols=145 Identities=14% Similarity=0.072 Sum_probs=112.4
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
||.++. .|+++.|+..+.+++...|.. +..++.+|.+|+..|+|++|+.+|.+++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~-----~~~~~~la~~y~~~~~~~~A~~~~~~al~------------------ 59 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQK-----SIKGFYFAKLYYEAKEYDLAKKYICTYIN------------------ 59 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHH-----HTTHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 566666 567777777777777777775 67777888888888888888888888877
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 246 (760)
.+|.++.+++.+|.+|...|++++|+..|++++.++|+++.+++.+|.++...|+
T Consensus 60 -------------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 60 -------------------------VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp -------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS
T ss_pred -------------------------hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 5667788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHH-HHHHHHHcCCChHHHHHHHHHHhhcCC
Q 004339 247 LQLSIEL-VNEALKVNGKYPNALSMLGDLELKNDD 280 (760)
Q Consensus 247 ~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 280 (760)
+.+|... ++++++++|+++.++..++.++...|+
T Consensus 115 ~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 115 TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8776654 578888888888888888888777764
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.72 E-value=1.7e-16 Score=155.61 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=91.8
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ---AFI 86 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 86 (760)
.+..++.+|..++..|+|++|+..|++++...|.+ ..+++.+|.+|...|++++|+..|++++..+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 35679999999999999999999999999999986 479999999999999999999999999999998764 788
Q ss_pred HHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 87 DLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 87 ~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
.+|.++. .+.. . ...+..++..+...|++++|+..|.+++...|
T Consensus 83 ~~g~~~~~~~~~----------------~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------A-----LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp HHHHHHHHHHC-----------------------------------CCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhhhhh----------------h-----hhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 8888875 2211 1 23455667777888999999999999998655
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.71 E-value=7.2e-17 Score=163.76 Aligned_cols=230 Identities=14% Similarity=0.079 Sum_probs=182.1
Q ss_pred HcCCHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------CCChHHHHHHH
Q 004339 209 QIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--------GKYPNALSMLG 272 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la 272 (760)
..|+++.|+.+|.+++.. +|..+.++..+|.++...|++++|+.+|.+++... |....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456777777777777763 25678889999999999999999999999999884 45566899999
Q ss_pred HHHhhcCCHHHHHHHHHHhhhcC-----C--CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh---
Q 004339 273 DLELKNDDWVKAKETFRAASDAT-----D--GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ--- 342 (760)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~-----~--~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 342 (760)
.++...|++++|+.+|.+++... + .....++..+|.+ |... |++++|+.+|.+++..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALL-CQNQ------------GKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTT------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999873 1 1256788899999 8888 9999999999999998
Q ss_pred -----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC----CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 343 -----HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG----SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 343 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
.|....++..+|.++...|++++|+.+|.+++...|. ...+....++..++.++...+.+..+..+ ..+.
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYG 238 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHH
Confidence 6777889999999999999999999999999998541 22335567788888877766654433332 2222
Q ss_pred hhh-----cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 414 RKF-----YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 414 ~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
..+ ..+..+.++..+|.+|...|++++|+.+|++++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 239 SWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 211 123347889999999999999999999999999763
No 97
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.71 E-value=1.3e-16 Score=140.38 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=114.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004339 338 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 417 (760)
Q Consensus 338 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 417 (760)
++..++|..+.++..+|.+|+..|+|++|+.+|.+++.++| .++.+|+++|.+|..+|++++|+..|++++..
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 76 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDDCDTCIRL-- 76 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence 34567899999999999999999999999999999999999 88999999999999999999999999999997
Q ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 418 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 418 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
+|.++.+++.+|.+|..+|++++|+..|+++++++|++..++.+|+.|+
T Consensus 77 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 7888999999999999999999999999999999999999999998874
No 98
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.70 E-value=5.4e-15 Score=150.35 Aligned_cols=238 Identities=11% Similarity=-0.008 Sum_probs=204.9
Q ss_pred HHHHcCCHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 206 LLEQIHDTV-AASVLYRLILFKYQDYVDAYLRLAAIAKARNN----------LQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 206 ~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.....|.+. +|+.++..++..+|.+..+|...+.++...+. +.+++.++..++..+|.+..+|...+.+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334566665 89999999999999999999999999988776 6899999999999999999999999999
Q ss_pred HhhcCC--HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc-HHHHHHHHHHHHhhCCCCHHHHH
Q 004339 275 ELKNDD--WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH-LEKAKELYTRVIVQHTSNLYAAN 351 (760)
Q Consensus 275 ~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~ 351 (760)
+...+. +..++.++.+++...|. +..+|...+.+ +... |. ++.++.++.+++..+|.|..+|+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~v-l~~l------------~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFV-AAQA------------AVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHh------------CcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999994 89999999999999998 89999999988 7666 77 69999999999999999999999
Q ss_pred HHHHHHHHc--------------CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc-----------CCHHHHH
Q 004339 352 GAGVVLAEK--------------GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-----------GNFALAM 406 (760)
Q Consensus 352 ~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~ 406 (760)
.++.++... +.+++++.++.+++..+| .+..+|+.+..++... +.+++++
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-----~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-----NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 999999877 568999999999999999 8899998777776665 4689999
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHH---HhccHHHHHHHHHHHHHhCCCChhHHhhHHH
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLARTHY---EAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 464 (760)
..+..++.. .|.+..++..++.+.. ..|...++..++.+.++++|-...-|..+..
T Consensus 259 ~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 259 ESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 999999997 5666555544443332 2578889999999999999988776666544
No 99
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.70 E-value=7.7e-15 Score=149.74 Aligned_cols=253 Identities=11% Similarity=-0.071 Sum_probs=211.9
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
..|....++..+..+....+..++|+.++.+++.++|.+..+|...+.++...| .+++++.++..++..+|++..+|..
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h 128 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH 128 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 445555666667777777777789999999999999999999999999999999 5999999999999999999999999
Q ss_pred HHHHHhhc-C-CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHH--------HHHHHHHHHH
Q 004339 271 LGDLELKN-D-DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE--------KAKELYTRVI 340 (760)
Q Consensus 271 la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al 340 (760)
.+.++... + ++.+++.++.+++...|. +..+|...+.+ +... +.++ +++.++.+++
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wv-l~~l------------~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWL-YSHF------------STLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHH-HHHH------------HHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHh------------ccccccchhhHHHHHHHHHHHH
Confidence 99999988 7 899999999999999988 88999998888 6666 5555 9999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH---------
Q 004339 341 VQHTSNLYAANGAGVVLAEKGQ-------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL--------- 404 (760)
Q Consensus 341 ~~~p~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~--------- 404 (760)
..+|.|..+|+..+.++...+. +++++.++.+++..+| .+..+|+.+..++...|....
T Consensus 195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-----~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-----HNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 9999999999999999999887 7999999999999999 889999999999998886400
Q ss_pred -------H-HHHHHHHHhhhcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCChhHHhhHH
Q 004339 405 -------A-MKMYQNCLRKFYY-------NTDAQILLYLARTHYEAEQWQDCKKSLLRAI-HLAPSNYTLRFDAG 463 (760)
Q Consensus 405 -------A-~~~~~~al~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la 463 (760)
. -....-++..... ...+.++..|+.+|...|+..+|..+|.... +.+|-....|...+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 1 1122223332222 3568999999999999999999999999987 67886655554443
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.69 E-value=2.3e-16 Score=138.67 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=113.7
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+....+|+.+.++..+|..|+..|+|++|+.+|++++..+|.++.+|+.+|.+|..+|++++|+..|++++.++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 130 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 130 (760)
|+.+|.++. .|++++|+..|+++++++|.+ ..++..++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-----~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSN-----EEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC-----HHHHHHHHHhc
Confidence 999999999 899999999999999999997 88988888764
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.69 E-value=1.9e-16 Score=148.71 Aligned_cols=167 Identities=16% Similarity=0.085 Sum_probs=135.1
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 004339 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 89 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (760)
+|.....++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4666778999999999999999999999999999999999999999999999999999999999999999 887766666
Q ss_pred HHHc--cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 90 ELLI--SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 90 ~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
.+.. .+....|+..|++++.+.|.+ +.+++.+|.++...|++++|+..|.+++..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------------------ 137 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDN-----FELACELAVQYNQVGRDEEALELLWNILKV------------------ 137 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------------------
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHh------------------
Confidence 5533 224445788888888888876 788888888888888888888888888763
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILF 225 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 225 (760)
+|. .+.++..+|.++...|++++|+..|++++.
T Consensus 138 -------------------------~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 -------------------------NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp -------------------------CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred -------------------------CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 333 345777888888888888888888877764
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.69 E-value=3.2e-16 Score=147.11 Aligned_cols=171 Identities=11% Similarity=0.057 Sum_probs=127.6
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHH
Q 004339 228 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 307 (760)
Q Consensus 228 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg 307 (760)
|.....++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++...| ++..+..++
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHH
Confidence 333445677777777777888888888777777787777888888888888888888888887777766 344443344
Q ss_pred HHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchH
Q 004339 308 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 387 (760)
Q Consensus 308 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 387 (760)
.+.+... +....|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++...|.. .++.
T Consensus 81 ~~~~~~~------------~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~ 145 (176)
T 2r5s_A 81 KLELHQQ------------AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QDGE 145 (176)
T ss_dssp HHHHHHH------------HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TTTH
T ss_pred HHHHHhh------------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ChHH
Confidence 3311111 233347888999999999999999999999999999999999999999888721 2366
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 388 VWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
++.++|.++..+|++++|+..|++++..
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 8889999999999999999999888764
No 103
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.68 E-value=9e-15 Score=148.72 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=201.6
Q ss_pred HHHHcCCHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 23 VQLKLGDFR-SALTNFEKVLEIYPDNCETLKALGHIYVQLGQ----------IEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 23 ~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
.....|.+. +|+.++..++..+|.+..+|+..+.++...+. +.+++.++..++..+|.+..+|...+.+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 335677776 79999999999999999999999999988776 6899999999999999999999999999
Q ss_pred Hc-cC--CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 92 LI-SS--DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE-FESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 92 ~~-~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
+. .+ .+..++.++.+++.++|.+ ..+|...+.+....|. +++++.++.+++.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprN-----y~AW~~R~~vl~~l~~~~~eel~~~~~~I~------------------- 173 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERN-----FHCWDYRRFVAAQAAVAPAEELAFTDSLIT------------------- 173 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-------------------
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-------------------
Confidence 87 56 4899999999999999998 8999999999999998 5999999999997
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHcCCcHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI--------------HDTVAASVLYRLILFKYQDYVDA 233 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~~l~~~p~~~~~ 233 (760)
.+|.+..+|..++.++... +.+++++.++..++..+|++..+
T Consensus 174 ------------------------~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~Sa 229 (331)
T 3dss_A 174 ------------------------RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA 229 (331)
T ss_dssp ------------------------HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred ------------------------HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 6778999999999998887 56899999999999999999999
Q ss_pred HHHHHHHHHHc-----------CCHHHHHHHHHHHHHHcCCChHHHHHHHHHH---hhcCCHHHHHHHHHHhhhcCCCCC
Q 004339 234 YLRLAAIAKAR-----------NNLQLSIELVNEALKVNGKYPNALSMLGDLE---LKNDDWVKAKETFRAASDATDGKD 299 (760)
Q Consensus 234 ~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~ 299 (760)
|+.+..++... +.+++++..+.+++...|++.-++..++.+. ...+...+...++.+++.+.|- .
T Consensus 230 W~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r 308 (331)
T 3dss_A 230 WFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-R 308 (331)
T ss_dssp HHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-G
T ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-h
Confidence 98776666555 4588999999999999999965444443332 2357788999999999999886 4
Q ss_pred hHHHHHHH
Q 004339 300 SYATLSLG 307 (760)
Q Consensus 300 ~~~~~~lg 307 (760)
...|..++
T Consensus 309 ~~~y~d~~ 316 (331)
T 3dss_A 309 AAYLDDLR 316 (331)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 44444443
No 104
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.66 E-value=4.9e-15 Score=151.17 Aligned_cols=243 Identities=13% Similarity=-0.004 Sum_probs=204.7
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHH
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
|...|++..++-.+..+....+..++|+.++.++|.++|++..+|...+.++...| .+.+++.++..++..+|.+..+|
T Consensus 47 i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW 126 (349)
T 3q7a_A 47 IMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW 126 (349)
T ss_dssp BCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence 34455555555556666666667789999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHHHc-c-C-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHhcccchhh
Q 004339 86 IDLGELLI-S-S-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE--------SAHQSFKDALGDGIWLT 154 (760)
Q Consensus 86 ~~la~~~~-~-~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~ 154 (760)
...+.++. . + ++..++.++.+++..+|++ ..+|...+.++...|.++ +++.++.+++.
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-----y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~------ 195 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-----YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR------ 195 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-----HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH------
Confidence 99999887 4 6 8999999999999999997 899999999999998888 99999999987
Q ss_pred hhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHc
Q 004339 155 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD-------TVAASVLYRLILFKY 227 (760)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~-------~~~A~~~~~~~l~~~ 227 (760)
.+|.+..+|...+.++...+. +++++.++.+++..+
T Consensus 196 -------------------------------------~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 196 -------------------------------------VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp -------------------------------------HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC
T ss_pred -------------------------------------hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC
Confidence 677899999999999999987 799999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHc------CCChHHHHHHHHHHhhcCCH
Q 004339 228 QDYVDAYLRLAAIAKARNNL--------------------QLSIELVNEALKVN------GKYPNALSMLGDLELKNDDW 281 (760)
Q Consensus 228 p~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~ 281 (760)
|.+..+|..+..++...|.. ......+..++... +.++.++..++.+|...|+.
T Consensus 239 P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~ 318 (349)
T 3q7a_A 239 PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRV 318 (349)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCH
Confidence 99999999999998887764 22222222222222 46788999999999999999
Q ss_pred HHHHHHHHHhhhcCCC
Q 004339 282 VKAKETFRAASDATDG 297 (760)
Q Consensus 282 ~~A~~~~~~al~~~~~ 297 (760)
.+|+.+|..+.....+
T Consensus 319 ~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 319 DDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp HHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHhhhCh
Confidence 9999999998755433
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.65 E-value=7.6e-15 Score=149.51 Aligned_cols=170 Identities=9% Similarity=0.043 Sum_probs=156.3
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHH
Q 004339 227 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 306 (760)
Q Consensus 227 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~l 306 (760)
.|.....++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++...|. ........
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999884 55555555
Q ss_pred HHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc-
Q 004339 307 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM- 385 (760)
Q Consensus 307 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~- 385 (760)
+.. +... +....|+..|++++..+|+++.+++.+|.+|...|++++|+..|.+++..+| .+
T Consensus 192 ~~~-l~~~------------~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p-----~~~ 253 (287)
T 3qou_A 192 QIE-LLXQ------------AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL-----TAA 253 (287)
T ss_dssp HHH-HHHH------------HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TGG
T ss_pred HHH-HHhh------------cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----ccc
Confidence 555 6666 8888999999999999999999999999999999999999999999999998 55
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 386 -PDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 386 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
+.++.+++.++...|+.++|+..|++++..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 889999999999999999999999998874
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.65 E-value=1.8e-15 Score=155.98 Aligned_cols=209 Identities=12% Similarity=0.102 Sum_probs=171.5
Q ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHH
Q 004339 26 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ-LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDA 103 (760)
Q Consensus 26 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~ 103 (760)
..|++.+|..+++++.+..+.. ++. .++++.|+.+|.++ |.+|. .|++..|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4678999999999999877752 122 58999999999886 45566 7899999999
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhh
Q 004339 104 FKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 182 (760)
Q Consensus 104 ~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (760)
|.+++.+.+..+... ...++.++|.+|..+|++++|+.+|++++.+.+.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~------------------------------ 108 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE------------------------------ 108 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------
Confidence 999999988754321 2568899999999999999999999999874210
Q ss_pred hhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 183 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNE 256 (760)
Q Consensus 183 l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 256 (760)
.........++.++|.+|.. |++++|+.+|++++.+.|.. ..++..+|.++...|++++|+.+|++
T Consensus 109 -------~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 109 -------NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp -------TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00112245788999999999 99999999999999887643 57889999999999999999999999
Q ss_pred HHHHcCCCh------HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 257 ALKVNGKYP------NALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 257 al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
++.+.|.+. .++..+|.++...|++.+|+.+|++++ ..|.
T Consensus 181 al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 999876542 377888999999999999999999999 8775
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.64 E-value=2.6e-15 Score=154.76 Aligned_cols=211 Identities=10% Similarity=0.028 Sum_probs=170.3
Q ss_pred cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004339 210 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 289 (760)
Q Consensus 210 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 289 (760)
.|++.+|..++.++.+..+.. ++...++++.|+.+|.++ |.+|...|++.+|+.+|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHH
Confidence 577889999999998876642 011157888888888775 567788899999999999
Q ss_pred HhhhcCCCC-----ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHH
Q 004339 290 AASDATDGK-----DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAANGAGVVLA 358 (760)
Q Consensus 290 ~al~~~~~~-----~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~ 358 (760)
+++.+.+.. ...++..+|.+ |... |++++|+.+|++++.+.+. ...++.++|.+|.
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~-~~~~------------g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMM-LKDL------------QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-HHHT------------TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-HHhC------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 998875421 24567788888 8887 9999999999999987542 2457889999999
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHH
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHY 433 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~ 433 (760)
. |++++|+.+|++++.+.|.... .....++.++|.+|..+|+|++|+.+|++++..++.... ..+++.+|.++.
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 9 9999999999999999873211 112578999999999999999999999999998654433 457889999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCChhH
Q 004339 434 EAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 434 ~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
.+|++.+|+.+|++++ ++|.....
T Consensus 207 ~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 9999999999999999 99987654
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.63 E-value=3.1e-15 Score=152.43 Aligned_cols=168 Identities=14% Similarity=-0.005 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHH
Q 004339 44 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEV 122 (760)
Q Consensus 44 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 122 (760)
.|.+...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++. .|++++|+..|++++...|.. ...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~ 187 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-----RYQ 187 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-----HHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-----HHH
Confidence 36666777777777777777777777777777777777777777777766 667777777777777666643 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHH
Q 004339 123 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 202 (760)
Q Consensus 123 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 202 (760)
+...+..+...+....|+..|++++. ..|+++.+++.
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~-------------------------------------------~~P~~~~~~~~ 224 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVA-------------------------------------------ENPEDAALATQ 224 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHH-------------------------------------------HCTTCHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHh-------------------------------------------cCCccHHHHHH
Confidence 55556666677777777777777766 55667777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 203 LARLLEQIHDTVAASVLYRLILFKYQDY--VDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
+|.++...|++++|+..|.+++..+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 225 la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 225 LALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 7777777777777777777777777776 67777777777777777777777777664
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.63 E-value=6.8e-16 Score=139.75 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=115.2
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
+++-.+-..|++++.++|+++.+++.+|.++...|++++|+.+|++++.++| .++.+|+++|.+|..+|+|++|+
T Consensus 16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----YNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHccHHHHH
Confidence 4455555678888999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 456 (760)
..|++++.. .|.++.+++++|.+|..+|++++|+.+|++++.+.|+.+
T Consensus 91 ~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 91 DLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999997 778899999999999999999999999999999999875
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.63 E-value=1.4e-15 Score=150.00 Aligned_cols=210 Identities=10% Similarity=-0.031 Sum_probs=157.0
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH--
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL-------GHIYVQLGQIEKAQELLRKAAKIDPRDAQAF-- 85 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-- 85 (760)
..+|..|.-+ ..+++..|..+|.+++..+|..+++|..+ +.++...+++..++..+.+.+.+.|....++
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 3466777776 68999999999999999999999999999 8999999999999999999999887654433
Q ss_pred -------------------HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 86 -------------------IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 145 (760)
Q Consensus 86 -------------------~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 145 (760)
+.++.++. .|+|++|...|..++...|.. . +++.+|.+++..++|++|+.+|..
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~-----~-~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH-----L-VAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH-----H-HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch-----H-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33566666 677888888777777666654 4 777777788888888888887765
Q ss_pred HhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 146 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-VTVLFNLARLLEQIHDTVAASVLYRLIL 224 (760)
Q Consensus 146 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l 224 (760)
++.. .+|.. ..+++++|.++..+|++++|+.+|.+++
T Consensus 161 a~~~------------------------------------------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 161 AGKW------------------------------------------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp GGGC------------------------------------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcc------------------------------------------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 5431 11111 3477777888888888888888888777
Q ss_pred HHc--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 225 FKY--QD-YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 225 ~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
... |. .+.+++.+|.++..+|+.++|...|++++..+|. ..++..|...
T Consensus 199 ~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 199 DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 433 44 5567777888888888888888888888888777 6666665443
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.61 E-value=2.5e-15 Score=135.99 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=88.9
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+++..+|+++.+++.+|.+++..|+|++|+.+|++++..+|.++.+|+.+|.+|..+|++++|+.+|++++.++|+++.+
T Consensus 27 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 45667788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
|+.+|.+|. .|++++|+.+|++++.+.|+.
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 888888877 778888888888888877653
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.61 E-value=1.2e-14 Score=163.74 Aligned_cols=164 Identities=13% Similarity=0.125 Sum_probs=131.0
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHH
Q 004339 27 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFK 105 (760)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~ 105 (760)
.|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|++++.++|+++.++..+|.++. .|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999988 789999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhc
Q 004339 106 TARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 185 (760)
Q Consensus 106 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (760)
+++.+.|.+ ..+++.+|.+|...|++++|+.+|++++.
T Consensus 82 ~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~------------------------------------- 119 (568)
T 2vsy_A 82 QASDAAPEH-----PGIALWLGHALEDAGQAEAAAAAYTRAHQ------------------------------------- 119 (568)
T ss_dssp HHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------------
Confidence 999998886 78999999999999999999999999887
Q ss_pred cCCCccCCcchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 004339 186 DGNHVELPWNKVTVLFNLARLLEQI---HDTVAASVLYRLILFKYQDYVDAYLRLA 238 (760)
Q Consensus 186 ~~~~~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la 238 (760)
..|.++.+++.+|.++... |++++|+..|.+++..+|.....+..++
T Consensus 120 ------~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 120 ------LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp ------HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ------hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 5567788899999999999 9999999999999999998877776665
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.61 E-value=1.2e-13 Score=133.72 Aligned_cols=186 Identities=17% Similarity=0.097 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccC----CHhHHHHHHHH
Q 004339 31 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS----DTGAALDAFKT 106 (760)
Q Consensus 31 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~A~~~~~~ 106 (760)
.+|+.+|+++... .++.+++.+|.+|...+++.+|+.+|++++.. .++.+++.||.+|..+ ++.+|+.+|++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3578889998874 78999999999999999999999999999875 5889999999998866 89999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhh
Q 004339 107 ARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 182 (760)
Q Consensus 107 al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (760)
+... .+ +.++++||.+|.. .+++.+|+.+|.+++..
T Consensus 79 A~~~--g~-----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------------------------------- 118 (212)
T 3rjv_A 79 AVEA--GS-----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------------------------------- 118 (212)
T ss_dssp HHHT--TC-----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---------------------------------
T ss_pred HHHC--CC-----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---------------------------------
Confidence 9653 33 7899999999988 88999999999999873
Q ss_pred hhccCCCccCCc--chHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc-C-----CHHHH
Q 004339 183 FENDGNHVELPW--NKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR-N-----NLQLS 250 (760)
Q Consensus 183 l~~~~~~~~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g-----~~~~A 250 (760)
.| ..+.++++||.+|.. .+++.+|+.+|++++.. |.++.+++.||.+|... | ++.+|
T Consensus 119 ----------~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A 187 (212)
T 3rjv_A 119 ----------SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKA 187 (212)
T ss_dssp ----------TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHH
T ss_pred ----------CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 33 347899999999998 88999999999999987 66777899999998764 3 89999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHH
Q 004339 251 IELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 251 ~~~~~~al~~~p~~~~~~~~la~ 273 (760)
+.+|+++.... ++.+...++.
T Consensus 188 ~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 188 LHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp HHHHHHHHHHT--CHHHHHHHHH
T ss_pred HHHHHHHHHcC--CHHHHHHHHH
Confidence 99999988764 4444444443
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.60 E-value=5.4e-14 Score=136.14 Aligned_cols=188 Identities=14% Similarity=0.059 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC----CHHHHHHHHHH
Q 004339 215 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND----DWVKAKETFRA 290 (760)
Q Consensus 215 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 290 (760)
+|+.+|.++... .++.+++.+|.+|...+++++|+.+|++++.. .++.+++.+|.+|.. + ++.+|+.+|.+
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 567778887764 67888888888888888888888888888764 678888888888887 6 78888888888
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCChH
Q 004339 291 ASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYAANGAGVVLAE----KGQFD 364 (760)
Q Consensus 291 al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~ 364 (760)
+... . ++.+++.||.+ |..... ..+++.+|+.+|++++...| .++.+++.||.+|.. .+++.
T Consensus 79 A~~~--g-~~~a~~~Lg~~-y~~g~g--------~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 79 AVEA--G-SKSGEIVLARV-LVNRQA--------GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHT--T-CHHHHHHHHHH-HTCGGG--------SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHC--C-CHHHHHHHHHH-HHcCCC--------CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 8654 2 67778888877 654100 00678888888888888776 347788888888887 77788
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 365 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-G-----NFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 365 ~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+|+.+|++++.. | .++.++++||.+|... | ++++|+.+|++++.. .+..+...++
T Consensus 147 ~A~~~~~~A~~~-~-----~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~----g~~~A~~~l~ 207 (212)
T 3rjv_A 147 KASEYFKGSSSL-S-----RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE----GFDTGCEEFD 207 (212)
T ss_dssp HHHHHHHHHHHT-S-----CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH----TCHHHHHHHH
T ss_pred HHHHHHHHHHHc-C-----CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHH
Confidence 888888888776 3 4566778888887764 2 788888888888775 3344444443
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.60 E-value=2.1e-14 Score=161.77 Aligned_cols=165 Identities=16% Similarity=0.062 Sum_probs=121.8
Q ss_pred cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 278 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
.|++++|+..|++++...|. +..++..+|.+ |... |++++|+.+|++++..+|++..++..+|.+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~-~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADA-ELGM------------GDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67 (568)
T ss_dssp -------------------C-CHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 36777788888888877776 67778888888 7777 8888888888888888888888888888888
Q ss_pred HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHh--
Q 004339 358 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-- 435 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-- 435 (760)
...|++++|+.+|++++...| .++.+++++|.+|..+|++++|+..|++++.. .|.++.++..+|.++..+
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAP-----EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhc
Confidence 888888888888888888887 77888888888888888888888888888886 567788888888888888
Q ss_pred -ccHHHHHHHHHHHHHhCCCChhHHhhHH
Q 004339 436 -EQWQDCKKSLLRAIHLAPSNYTLRFDAG 463 (760)
Q Consensus 436 -g~~~~A~~~~~~al~~~p~~~~~~~~la 463 (760)
|++++|+..|++++..+|.+...++.++
T Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred cccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 8888888888888888888877766655
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.60 E-value=5.9e-15 Score=133.77 Aligned_cols=126 Identities=10% Similarity=0.067 Sum_probs=116.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
-..|++++.++|.++.+++.+|.++...|++++|+.+|.+++...| .++.+|+++|.++..+|++++|+..|+++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-----YDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3568889999999999999999999999999999999999999999 88999999999999999999999999999
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 413 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+.. .|.++.+++.+|.+|..+|++++|+.+|++++.+.|+++........+
T Consensus 82 l~l--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 82 AVM--DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp HHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred Hhc--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 997 678899999999999999999999999999999999988765444333
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.58 E-value=9.6e-15 Score=144.07 Aligned_cols=230 Identities=13% Similarity=-0.003 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRL-------AAIAKARNNLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
..++..|..+ ..+++..|...|.+++..+|...++|+.+ +.++...+++.+++..+.+.+.+.|....+++.
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 3445555554 45666666666666666666666666666 455555555555555555555555544433333
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHH
Q 004339 271 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 350 (760)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 350 (760)
++-+|- + +...-.......+.++.+ +... |++++|...|..++...|.+. ++
T Consensus 87 ~~g~y~---~-----------~~~~v~~r~dl~LayA~~-L~~~------------g~y~eA~~~l~~~~~~~p~~~-~~ 138 (282)
T 4f3v_A 87 IGGLYG---D-----------ITYPVTSPLAITMGFAAC-EAAQ------------GNYADAMEALEAAPVAGSEHL-VA 138 (282)
T ss_dssp CCTTTC---C-----------CEEECSSHHHHHHHHHHH-HHHH------------TCHHHHHHHHTSSCCTTCHHH-HH
T ss_pred cCCccc---c-----------cccccCCHhHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhcCCchH-HH
Confidence 111110 0 000001123445566677 7777 999999999999999999888 99
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CC-cHHHHHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ-MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-NT-DAQILLY 427 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~-~~~~~~~ 427 (760)
+.+|.++...++|++|+.+|..+....+ +. ...+++++|.++..+|++++|+..|++++.. +. |. .+.+++.
T Consensus 139 ~~~a~l~~~~~r~~dA~~~l~~a~~~~d----~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~ 213 (282)
T 4f3v_A 139 WMKAVVYGAAERWTDVIDQVKSAGKWPD----KFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWY 213 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTGGGCSC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhccCC----cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHH
Confidence 9999999999999999999987655321 01 1458999999999999999999999999863 22 44 5789999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhH
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 462 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 462 (760)
+|.++..+|+.++|...|++++..+|. ..++..|
T Consensus 214 ~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 214 LAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 999999999999999999999999998 6665554
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.57 E-value=4.2e-14 Score=143.46 Aligned_cols=196 Identities=13% Similarity=0.048 Sum_probs=148.8
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
|.++..++.+|..++..|+|++|+.+|.+++..+|.++.+++.+|.+|..+|++++|+..|.+++.++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhh
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 169 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 169 (760)
++. .|++++|+..|.+++.+.|.+.......++..+.. ..+.........
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--------------------- 131 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI--------AKKKRWNSIEER--------------------- 131 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH--------HHHHHHHHHHHT---------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH--------HHHHHHHHHHHH---------------------
Confidence 988 88999999999999999998643322222222211 111111111111
Q ss_pred HHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc-CCHH
Q 004339 170 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR-NNLQ 248 (760)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~ 248 (760)
..|....+...++.++ .|++++|+..|..++...|.+......++.++... +.++
T Consensus 132 ----------------------~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 187 (281)
T 2c2l_A 132 ----------------------RIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMA 187 (281)
T ss_dssp ----------------------CCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHH
T ss_pred ----------------------HHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 2233444555555544 57888888888888888887777777776666555 5567
Q ss_pred HHHHHHHHHHH
Q 004339 249 LSIELVNEALK 259 (760)
Q Consensus 249 ~A~~~~~~al~ 259 (760)
+|..+|.++..
T Consensus 188 ~a~~~f~~a~~ 198 (281)
T 2c2l_A 188 DMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHSSC
T ss_pred HHHHHHHhhhc
Confidence 77777776654
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.57 E-value=7.2e-16 Score=160.84 Aligned_cols=166 Identities=12% Similarity=0.087 Sum_probs=140.5
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
+++..|+..|..++...|.. +.+++.+|.+|+..|++++|+.+|.+++...|........
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~-----a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~--------------- 186 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQ-----STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE--------------- 186 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHH-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH---------------
T ss_pred eecccccchhcCCHHHHHHH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChH---------------
Confidence 46778888888888888886 8899999999999999999999999999865532110000
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 254 (760)
......|....+++++|.+|..+|++++|+.+|.+++.++|.++.+++.+|.++...|++++|+.+|
T Consensus 187 -------------~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 253 (336)
T 1p5q_A 187 -------------EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF 253 (336)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0000223346899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhcCCHHHH-HHHHHHhhh
Q 004339 255 NEALKVNGKYPNALSMLGDLELKNDDWVKA-KETFRAASD 293 (760)
Q Consensus 255 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~ 293 (760)
.+++.++|++..++..++.++...|++.+| ...|.+++.
T Consensus 254 ~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 254 QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 456666654
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.57 E-value=1.5e-15 Score=158.52 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=126.6
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC----------
Q 004339 277 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN---------- 346 (760)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------- 346 (760)
.++++.+|+..|..++...|. ...++..+|.+ |+.. |+++.|+.+|.+++.+.|.+
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~-~a~~~~~~g~~-~~~~------------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~ 190 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLE-QSTIVKERGTV-YFKE------------GKYKQALLQYKKIVSWLEYESSFSNEEAQK 190 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHH-HHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHTTTCCCCCSHHHHH
T ss_pred EEeecccccchhcCCHHHHHH-HHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 445666676666666665554 56777778888 7777 88888888888888888877
Q ss_pred -----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc
Q 004339 347 -----LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 347 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 421 (760)
..+++++|.+|...|++++|+.+|.+++.+.| .++.+++++|.+|..+|++++|+..|++++.. .|.+
T Consensus 191 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~ 263 (336)
T 1p5q_A 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS-----NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNN 263 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC
Confidence 68899999999999999999999999999998 78899999999999999999999999999996 6777
Q ss_pred HHHHHHHHHHHHHhccHHHH-HHHHHHHHHh
Q 004339 422 AQILLYLARTHYEAEQWQDC-KKSLLRAIHL 451 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 451 (760)
..++..+|.++..+|++.+| ...|.+++..
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999888 4566666543
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.55 E-value=2.7e-14 Score=128.60 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=114.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 334 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 334 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
..|.+++..+|.+..+++.+|.++...|++++|+.+|.+++...| .++.+|+.+|.+|...|++++|+..|++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----YDARYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467788889999999999999999999999999999999999999 889999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 414 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 414 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
.. .|.++.+++.+|.+|..+|++++|+.+|++++.+.|.++........+.
T Consensus 80 ~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 80 LM--DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred hc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 97 7888999999999999999999999999999999999987765555543
No 122
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.54 E-value=3.4e-13 Score=119.24 Aligned_cols=135 Identities=21% Similarity=0.414 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Q 004339 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS 380 (760)
Q Consensus 301 ~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 380 (760)
.+++.+|.+ +... |+++.|+.+|.+++...|.+..++..+|.++...|++++|+.+|.+++...|
T Consensus 2 ~~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-- 66 (136)
T 2fo7_A 2 EAWYNLGNA-YYKQ------------GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-- 66 (136)
T ss_dssp HHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--
T ss_pred cHHHHHHHH-HHHc------------CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--
Confidence 357788888 8888 9999999999999999999999999999999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 381 VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 381 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
..+.+++.+|.++...|++++|+.+|.+++.. .|.++.++..+|.++...|++++|+.+|.+++..+|.+
T Consensus 67 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 67 ---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp ---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred ---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 77999999999999999999999999999996 56778999999999999999999999999999999863
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.54 E-value=5.1e-14 Score=126.72 Aligned_cols=110 Identities=20% Similarity=0.201 Sum_probs=105.9
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+++..+|.++.+++.+|.+++..|+|++|+.+|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|+++.+
T Consensus 9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 88 (142)
T 2xcb_A 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
++.+|.++. .|++++|+.+|++++.+.|.+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999998 899999999999999999975
No 124
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.53 E-value=2.6e-13 Score=135.67 Aligned_cols=227 Identities=13% Similarity=0.078 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 277 (760)
...+.+.++|..+|++.... ..+....+...++..+ . +. |+..|++.+...+....++..+|.++..
T Consensus 46 ~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~-~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 46 TLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFL-D-TK---NIEELENLLKDKQNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHH-T-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHh-c-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 46677778888888876421 1222233434444433 2 22 7888888887766667777899999999
Q ss_pred cCCHHHHHHHHHHhhhcCC-CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC------CHHHH
Q 004339 278 NDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAA 350 (760)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~-~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~ 350 (760)
.|++++|+.++.+++...| .....++..++.+ +... |+++.|...++++...+|+ .+.+.
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi-~L~~------------~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV-ALLN------------NNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 9999999999999888765 2266777777888 8888 9999999999999888882 33344
Q ss_pred HHHHHHHHHcC--ChHHHHHHHHHHHHHhcCCCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc--------C
Q 004339 351 NGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY--------Y 418 (760)
Q Consensus 351 ~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~ 418 (760)
..-|++....| ++..|..+|+.+....| + .+..+++ +++.+|++++|...++.++...| +
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p-----~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFP-----TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-----SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCC-----CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 44466666666 99999999999887766 4 2344444 89999999999999998877643 3
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHh
Q 004339 419 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 460 (760)
Q Consensus 419 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 460 (760)
|.++.++.+++.+.+.+|+ .|..++.++...+|+++.+.-
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 7889999999999999998 899999999999999987653
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.53 E-value=7.9e-14 Score=126.28 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=104.3
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+++..+|.++.+++.+|.+++..|+|++|+.+|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|+++.+
T Consensus 12 ~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 91 (148)
T 2vgx_A 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91 (148)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred HHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
++.+|.+|. .|++++|+.+|.+++.+.|.+
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 999999998 889999999999999999875
No 126
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.52 E-value=3.8e-13 Score=118.93 Aligned_cols=132 Identities=29% Similarity=0.526 Sum_probs=125.2
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI- 93 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 93 (760)
.+++.+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|.+++...|.++.++..+|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
.|++..|+..+.+++...|.. ..++..+|.++...|++++|+.+|.+++...|
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRS-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 789999999999999998875 78999999999999999999999999987554
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.4e-13 Score=119.37 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=108.5
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
|..+..++.+|..++..|+|++|+.+|.+++..+|.++.+|+.+|.++...|++++|+..|.+++.++|.++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHH
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGE-EVPIEVLNNIGVIHFE 132 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~ 132 (760)
++. .|++.+|+..|.+++.+.|.... +....++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 998 88999999999999999943211 1126777777776543
No 128
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.51 E-value=6.1e-11 Score=129.67 Aligned_cols=375 Identities=8% Similarity=-0.014 Sum_probs=242.5
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhc---CCCcHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ-IEKAQELLRKAAKI---DPRDAQAFID 87 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~ 87 (760)
+.+...|..+...+-.|+++.+..+|++++...| +...|..+.......+. .+.....|+.++.. +|.+...|..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 4455666677777777888888888888888777 77788877777766653 34566677777753 6777888888
Q ss_pred HHHHHcc-----CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchh
Q 004339 88 LGELLIS-----SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162 (760)
Q Consensus 88 la~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 162 (760)
+...+.. ++.+.+..+|++++.+ |... ...+|.....+-.. .+...+...+......
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~---~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~~~------------- 152 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGS---LSELWKDFENFELE-LNKITGKKIVGDTLPI------------- 152 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTT---HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhh---HHHHHHHHHHHHHH-hccccHHHHHHHHhHH-------------
Confidence 8877652 3577788888888874 4321 12333333222222 1222222222221100
Q ss_pred hhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHc--C-----CHHHHHHHHHHHHHHcCCcHHHHH
Q 004339 163 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI--H-----DTVAASVLYRLILFKYQDYVDAYL 235 (760)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~--g-----~~~~A~~~~~~~l~~~p~~~~~~~ 235 (760)
+..... .+..+... ........|..+...-... + .......+|++++...|..+..|+
T Consensus 153 --y~~ar~--------~y~~~~~~-----~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~ 217 (493)
T 2uy1_A 153 --FQSSFQ--------RYQQIQPL-----IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYF 217 (493)
T ss_dssp --HHHHHH--------HHHHHHHH-----HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred --HHHHHH--------HHHHHHHH-----HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 000000 00000000 0001223444433332221 1 145677899999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC---------CCChHHHHHH
Q 004339 236 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD---------GKDSYATLSL 306 (760)
Q Consensus 236 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------~~~~~~~~~l 306 (760)
..+..+...|+++.|..+|.+++.. |.+..++...+... ..++ ....+........ ......|...
T Consensus 218 ~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 218 FYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTH---HHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 9999999999999999999999999 99988887666552 1221 1111111111110 1012344555
Q ss_pred HHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhcCCCCCCc
Q 004339 307 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG-QFDVSKDLFTQVQEAASGSVFVQM 385 (760)
Q Consensus 307 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~ 385 (760)
+.. .... +.++.|..+|.++ ...+....+|...|.+....+ +++.|..+|..++...| +.
T Consensus 293 ~~~-~~r~------------~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-----~~ 353 (493)
T 2uy1_A 293 LNY-VLKK------------RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-----DS 353 (493)
T ss_dssp HHH-HHHH------------HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-----TC
T ss_pred HHH-HHHc------------CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-----CC
Confidence 554 4444 7899999999999 433345667777777666655 69999999999999988 77
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 386 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
+..|...+......|+.+.|..+|+++. ....++......-...|+.+.+...+++++.
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888999999999999999999872 3577788887777888999999999999885
No 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.2e-13 Score=119.68 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHH
Q 004339 344 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 423 (760)
Q Consensus 344 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 423 (760)
|..+..+..+|.++...|++++|+.+|.+++...| .++.+|+++|.++..+|++++|+..|++++.. .|.++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 73 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVR 73 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHH
Confidence 34567889999999999999999999999999999 88999999999999999999999999999997 778899
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCChhHHhhHHHHHHH
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVAMQK 468 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 468 (760)
+++.+|.+|..+|++++|+.+|++++.++ |.+..++..++.+...
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 9999988888887543
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.51 E-value=5.7e-14 Score=142.46 Aligned_cols=197 Identities=10% Similarity=-0.020 Sum_probs=149.0
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 194 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
|..+..++.+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|.+++.++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004339 274 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 353 (760)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 353 (760)
+|...|++++|+..|.+++.+.|.. ...+...... . -....+...........|.+..+...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~i~~~l 143 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQ-RLNFGDDIPS-A---------------LRIAKKKRWNSIEERRIHQESELHSYL 143 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT-TCCCCSHHHH-H---------------HHHHHHHHHHHHHHTCCCCCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc-hhhHHHHHHH-H---------------HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999887642 1111111111 1 111122222333334566666766666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 004339 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-GNFALAMKMYQNCLR 414 (760)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 414 (760)
+.++ .|++++|+..|.+++...| .+......++.++... +.+++|...|.++..
T Consensus 144 ~~l~--~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 144 TRLI--AAERERELEECQRNHEGHE-----DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHH--HHHHHHHHTTTSGGGTTTS-----CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHH--HHHHHHHHHHHHhhhcccc-----chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6654 6788888888888888877 6666666666666665 567777777777665
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.49 E-value=3.3e-13 Score=126.44 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=118.1
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH-HHHcCCH--H
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV-YFAQGNF--A 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~-~~~~g~~--~ 403 (760)
|+++.|+..|.+++..+|.++.++..+|.+|...|++++|+.+|.+++...| .++.+++.+|.+ +...|++ +
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-----ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhcCCcchH
Confidence 8999999999999999999999999999999999999999999999999999 789999999999 8899999 9
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHh
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 460 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 460 (760)
+|+.+|.+++.. .|.++.+++.+|.+|...|++++|+.+|.+++.++|.++....
T Consensus 99 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 99 QTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 999999999997 6788999999999999999999999999999999999866543
No 132
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.49 E-value=3.9e-11 Score=131.20 Aligned_cols=353 Identities=13% Similarity=0.066 Sum_probs=229.1
Q ss_pred HcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC-CHhHHHH
Q 004339 26 KLG-DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS-DTGAALD 102 (760)
Q Consensus 26 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~-~~~~A~~ 102 (760)
..| ++..|..+|++++...|. |+++.+..+|++++...| +...|..+..... .+ ..+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 488899999999998887 889999999999999888 7888888877665 44 3456677
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHH
Q 004339 103 AFKTARTLLKKAGEEVPIEVLNNIGVIHF----EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 178 (760)
Q Consensus 103 ~~~~al~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (760)
.|+.++.....+ .....+|...+.++. ..|+.+.+..+|++++.. |..... .....+ ..+.
T Consensus 70 ~fe~al~~vg~d--~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~-~lw~~Y--------~~fE--- 134 (493)
T 2uy1_A 70 VYEFTLGQFENY--WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLS-ELWKDF--------ENFE--- 134 (493)
T ss_dssp HHHHHHHHSTTC--TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHH-HHHHHH--------HHHH---
T ss_pred HHHHHHHHcCCC--cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHH-HHHHHH--------HHHH---
Confidence 888888763211 113688888887765 356788999999999984 311100 000000 0000
Q ss_pred hhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHcC--C-----HHHH
Q 004339 179 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-YVDAYLRLAAIAKARN--N-----LQLS 250 (760)
Q Consensus 179 ~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g--~-----~~~A 250 (760)
.. .+ ...+ ...+-...+.+..|...|..+....+. ....|..+...-...+ - ....
T Consensus 135 --~~---------~~--~~~~---~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv 198 (493)
T 2uy1_A 135 --LE---------LN--KITG---KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRM 198 (493)
T ss_dssp --HH---------HC--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHH
T ss_pred --HH---------hc--cccH---HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHH
Confidence 00 00 0000 011111223455666666666654433 4456655554433221 1 3456
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHH
Q 004339 251 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 330 (760)
Q Consensus 251 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~ 330 (760)
..+|++++...|..+.+|+..+..+...|+.+.|..+|.+++.. |. ....++..+.. . .. . .-+.
T Consensus 199 ~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~~y~~~-~-e~---~--------~~~~ 263 (493)
T 2uy1_A 199 HFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSLYYGLV-M-DE---E--------AVYG 263 (493)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHHHHHHH-T-TC---T--------HHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHHHHHhh-c-ch---h--------HHHH
Confidence 78999999999999999999999999999999999999999999 76 44444433322 0 00 0 0011
Q ss_pred HHHHHHHHH------HhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC-CHH
Q 004339 331 KAKELYTRV------IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG-NFA 403 (760)
Q Consensus 331 ~A~~~~~~a------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g-~~~ 403 (760)
.....+... ....+....+|...+..+.+.+..+.|..+|.++ ..|. ....+|...|.+.+..+ +++
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~----~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL--GNEG----VGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--TTSC----CCHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh--hCCC----CChHHHHHHHHHHHHHCCChH
Confidence 111110000 0001112356788888887888899999999999 3442 34678887787777767 599
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
.|..+|+.++..+ |..+..+..++......|+.+.|..+|+++
T Consensus 338 ~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 338 TPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999975 455777777888888999999999999997
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.49 E-value=8.8e-13 Score=127.60 Aligned_cols=138 Identities=13% Similarity=0.198 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Q 004339 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 379 (760)
Q Consensus 300 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 379 (760)
...++.+|.+ ++.. |+++.|+.+|.+++ .| ++.+++.+|.++...|++++|+.+|.+++...|
T Consensus 6 ~~~~~~~g~~-~~~~------------~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~- 68 (213)
T 1hh8_A 6 AISLWNEGVL-AADK------------KDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK- 68 (213)
T ss_dssp HHHHHHHHHH-HHHT------------TCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHH-HHHh------------CCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-
Confidence 3456778888 8888 99999999999985 33 789999999999999999999999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC--------------cHHHHHHHHHHHHHhccHHHHHHHH
Q 004339 380 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT--------------DAQILLYLARTHYEAEQWQDCKKSL 445 (760)
Q Consensus 380 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~ 445 (760)
.++.+++++|.+|...|++++|+..|++++...+... .+.+++.+|.+|...|++++|+.+|
T Consensus 69 ----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 69 ----HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 8899999999999999999999999999999754332 3599999999999999999999999
Q ss_pred HHHHHhCCCChhH
Q 004339 446 LRAIHLAPSNYTL 458 (760)
Q Consensus 446 ~~al~~~p~~~~~ 458 (760)
++++.+.|++...
T Consensus 145 ~~al~~~p~~~~~ 157 (213)
T 1hh8_A 145 ALATSMKSEPRHS 157 (213)
T ss_dssp HHHHTTCCSGGGG
T ss_pred HHHHHcCcccccc
Confidence 9999999987543
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.49 E-value=6e-12 Score=128.57 Aligned_cols=181 Identities=10% Similarity=0.052 Sum_probs=146.8
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC--
Q 004339 227 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDGK-- 298 (760)
Q Consensus 227 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 298 (760)
.|.....+...+..+...|++++|+..+.+++...+.... .++.+|.++...|++++|+.+|.+++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 3455566777888889999999999999999988776543 45678889999999999999999999765432
Q ss_pred ---ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCChHHHHH
Q 004339 299 ---DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI---VQHTSNL----YAANGAGVVLAEKGQFDVSKD 368 (760)
Q Consensus 299 ---~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~ 368 (760)
...++..+|.+ |... |+++.|+.+|.+++ ...|.+. .+++++|.+|...|++++|+.
T Consensus 151 ~~~~~~~~~~lg~~-y~~~------------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 151 VYQNLYIENAIANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp TTHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 14578899999 9988 99999999999999 5566643 589999999999999999999
Q ss_pred HHHHHHHHhcC-CCCCCchHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhhcCCC
Q 004339 369 LFTQVQEAASG-SVFVQMPDVWINLAHVYFAQGNFALA-MKMYQNCLRKFYYNT 420 (760)
Q Consensus 369 ~~~~al~~~p~-~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~ 420 (760)
+|.+++.+.+. ......+.+++++|.+|..+|++++| ..+|++++..+...+
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 99999988752 11223478899999999999999999 788999988753333
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.48 E-value=1.8e-12 Score=132.55 Aligned_cols=180 Identities=9% Similarity=0.005 Sum_probs=146.6
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC------ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD--- 81 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 81 (760)
|.....+...+..++..|+|++|+..+.+++...|... ..++.+|.++...|++++|+.+|.+++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34445667889999999999999999999999887754 446778999999999999999999999875443
Q ss_pred ---HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhh
Q 004339 82 ---AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 155 (760)
Q Consensus 82 ---~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 155 (760)
..++..+|.+|. .|+++.|+.+|.+++.+....+... ...+++++|.+|..+|+|++|+.+|++++...+.
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--- 228 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--- 228 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh---
Confidence 568899999998 8899999999999997765543211 1368999999999999999999999999874210
Q ss_pred hcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHc
Q 004339 156 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA-SVLYRLILFKY 227 (760)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~~~ 227 (760)
.........+++++|.+|...|++++| ..+|.+++.+.
T Consensus 229 ----------------------------------~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 229 ----------------------------------INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp ----------------------------------TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ----------------------------------cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 012233567899999999999999999 78899988643
No 136
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.48 E-value=4.3e-12 Score=126.85 Aligned_cols=189 Identities=10% Similarity=-0.027 Sum_probs=151.0
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------ChH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ--DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK------YPN 266 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 266 (760)
....+++.+|.++...|++++|+.++.+.+..+| .+..++..++.++..+|+++.|...++++...+|+ ...
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l 177 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMI 177 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHH
Confidence 3456678999999999999999999999998886 89999999999999999999999999999999883 333
Q ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh--
Q 004339 267 ALSMLGDLELKND--DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-- 342 (760)
Q Consensus 267 ~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 342 (760)
+...-+++.+..| ++..|..+|+.+....|. .......++ + +... |++++|...++.++..
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln-~-~~~~------------g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLN-L-HLQQ------------RNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHH-H-HHHH------------TCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHH-H-HHHc------------CCHHHHHHHHHHHHHhcc
Confidence 4444465666666 999999999999877663 112222222 6 8888 9999999999988876
Q ss_pred --------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 343 --------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 343 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
+|+++.++.+++.+....|+ +|..++.++....| ++|.+.- +.+.-..|.++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P-----~hp~i~d-----------~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH-----EHAFIKH-----------HQEIDAKFDELVR 304 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC-----CCHHHHH-----------HHHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC-----CChHHHH-----------HHHHHHHHHHHHH
Confidence 48899999999999888997 88999999999999 6666543 3444555555555
Q ss_pred hh
Q 004339 415 KF 416 (760)
Q Consensus 415 ~~ 416 (760)
.+
T Consensus 305 ky 306 (310)
T 3mv2_B 305 KY 306 (310)
T ss_dssp TC
T ss_pred Hh
Confidence 43
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.47 E-value=1.1e-12 Score=121.29 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=109.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcH
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 422 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 422 (760)
.+.++.+++.+|.++...|++++|+.+|.+++.+.| .++.+|+++|.+|..+|++++|+..|++++.. .|.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 79 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-----ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYS 79 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCH
Confidence 345677899999999999999999999999999999 88999999999999999999999999999997 77889
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
.+++.+|.+|..+|++++|+.+|++++.++|++..++++.+++
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999988777765
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.46 E-value=7.2e-13 Score=117.10 Aligned_cols=123 Identities=13% Similarity=0.202 Sum_probs=116.6
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
...|..+.+++.+|.+++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|++++..+|.++.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 135 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~ 135 (760)
+|.++. .|++..|+.+|.+++.+.|.. ..++..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSC-----KEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGG-----THHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhcC
Confidence 999998 889999999999999999987 7899999999988764
No 139
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.46 E-value=1.2e-12 Score=116.51 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=112.1
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
..+|.++..++.+|.+++..|+|++|+.+|.+++..+|.++.+++.+|.++...|+++.|+..|.+++.++|.++.+++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 133 (760)
+|.++. .|++..|+..|.+++.+.|.........++..+..+....
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999998 8899999999999999999954444466766666665443
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.46 E-value=6.7e-12 Score=115.69 Aligned_cols=138 Identities=9% Similarity=0.078 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHH
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 426 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 426 (760)
+..+..+|.++...|+++.|+.+|.+++...| .++.+++++|.++...|++++|+.+|.+++.. .|.++.+++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~ 85 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 46788899999999999999999999999998 78999999999999999999999999999997 677899999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH--HHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhh
Q 004339 427 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA--MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA 503 (760)
Q Consensus 427 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~ 503 (760)
.+|.++..+|++++|+.+|.+++.++|.+..++..++.+ +...+ .+..|+..+..+..++..+..
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~ 152 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK------------AFERAIAGDEHKRSVVDSLDI 152 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH------------HHHHHHHcccchHHHhcccch
Confidence 999999999999999999999999999999888666665 33333 677777777777777766543
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.46 E-value=6.4e-13 Score=116.88 Aligned_cols=125 Identities=21% Similarity=0.220 Sum_probs=117.5
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
...+|..+..++.+|..++..|+++.|+.+|++++...|.++.++..+|.++...|++++|+.+|.+++..+|.++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 004339 87 DLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 136 (760)
Q Consensus 87 ~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 136 (760)
.+|.++. .|++..|+.+|.+++.+.|.. ..++..+|.++...|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPDN-----ETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCccc-----hHHHHHHHHHHHHHhcC
Confidence 9999998 889999999999999999886 89999999999998875
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.45 E-value=6.3e-13 Score=122.83 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=107.7
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
..++..+..++.+|.+++..|+|++|+.+|++++..+|.++.+|+.+|.+|...|++++|+.+|++++.++|.++.+|+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI 129 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 129 (760)
+|.++. .|++..|+.+|.+++.+.|.+ ..+++..+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~l~ 122 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNG-----GSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSS-----CCHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHH
Confidence 999998 889999999999999999987 4555554443
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.45 E-value=3e-12 Score=118.13 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Q 004339 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 379 (760)
Q Consensus 300 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 379 (760)
+..+..+|.+ ++.. |+++.|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++...|
T Consensus 13 ~~~~~~~a~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~- 78 (166)
T 1a17_A 13 AEELKTQAND-YFKA------------KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK- 78 (166)
T ss_dssp HHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHH-HHHc------------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-
Confidence 4567788888 8888 9999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHH--HHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 380 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL--LYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 380 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
.++.+++.+|.++..+|++++|+.+|.+++.. .|.+..++ +.++..+...|++++|+..+.++..+.
T Consensus 79 ----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 79 ----KYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 78999999999999999999999999999997 55666666 455555889999999999999887653
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.45 E-value=2e-12 Score=113.62 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---- 421 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 421 (760)
...++..+|.+++..|+|++|+.+|.++++++| .++.+|.++|.+|..+|+|++|+..|++++...+....
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-----~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-----SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 355788899999999999999999999999999 88999999999999999999999999999997544322
Q ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 422 -AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 422 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
..+++.+|.++..+|++++|+.+|++++...|+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 568999999999999999999999999999885
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.44 E-value=3.7e-12 Score=130.13 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=117.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChH------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC-C----hHHHHH
Q 004339 237 LAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDGK-D----SYATLS 305 (760)
Q Consensus 237 la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~----~~~~~~ 305 (760)
.+..+...|++++|+.++.+++...+..+. .+..+|.++...+++++|+.+|.+++...+.. + ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355566666777777777666665555444 23347777777778888888888888754321 2 235778
Q ss_pred HHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 306 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 306 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
+|.+ |... |+++.|+.+|++++.. .+....+++++|.+|...|++++|+.+|.+++.+.+
T Consensus 161 lg~~-y~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 161 IANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8888 8887 8888888888888842 122344778888888888888888888888888775
Q ss_pred CC-CCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhh
Q 004339 379 GS-VFVQMPDVWINLAHVYFAQGN-FALAMKMYQNCLRKF 416 (760)
Q Consensus 379 ~~-~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 416 (760)
.. .....+.+++++|.+|..+|+ +++|+.+|++++..+
T Consensus 228 ~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 21 122336788888888888884 688888888888765
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.43 E-value=2.8e-13 Score=129.58 Aligned_cols=152 Identities=8% Similarity=-0.019 Sum_probs=100.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH--
Q 004339 270 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL-- 347 (760)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-- 347 (760)
..+......|.++.+...+.......+. ....+..+|.. ++.. |++..|+.+|.+++...|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~ 74 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQ-SAFDIKEEGNE-FFKK------------NEINEAIVKYKEALDFFIHTEEW 74 (198)
T ss_dssp -------------CCCSGGGCCHHHHHH-HHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHTTTTCTTC
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHH-HHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHhccccc
Confidence 3444444555555555555443332222 34556666776 6666 777777777777777776665
Q ss_pred --------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 348 --------------YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 348 --------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
.++.++|.++...|++++|+.+|.+++.+.| .++.+++.+|.+|..+|++++|+..|++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-----NNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6778888888888888888888888888877 678888888888888888888888888888
Q ss_pred hhhcCCCcHHHHHHHHHHHHHhccHHHHH
Q 004339 414 RKFYYNTDAQILLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 414 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 442 (760)
.. .|.++.++..++.++..+|+..++.
T Consensus 150 ~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 SL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 76 5667778888888888777777665
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.43 E-value=5.3e-13 Score=127.67 Aligned_cols=166 Identities=17% Similarity=0.053 Sum_probs=123.3
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.+.++.|...|.......+.. +..+..+|.+++..|+|++|+.+|.+++...|........ .+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~----- 82 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQS-----AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ----ILLDK----- 82 (198)
T ss_dssp -----CCCSGGGCCHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH----HHHHH-----
T ss_pred hhhccccCchhhCCHHHHHHH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh----hHHHH-----
Confidence 456666666666665555554 7788899999999999999999999998855421100000 00000
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 253 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 253 (760)
.......+++++|.++...|++++|+.+|.+++..+|.+..+++.+|.++...|++++|+.+
T Consensus 83 ------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 83 ------------------KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 00012478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH-HHHHHh
Q 004339 254 VNEALKVNGKYPNALSMLGDLELKNDDWVKAK-ETFRAA 291 (760)
Q Consensus 254 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~a 291 (760)
|.+++.++|.++.++..++.++...++..++. ..|..+
T Consensus 145 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 145 LYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888877766 334433
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.43 E-value=7.5e-13 Score=116.29 Aligned_cols=102 Identities=18% Similarity=0.305 Sum_probs=78.9
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-------HH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-------QA 84 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~ 84 (760)
+.+.++..+|..++..|+|++|+.+|++++.++|+++.+|..+|.+|..+|++++|+..|.+++.++|.+. .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888888888888877653 35
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKK 113 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~ 113 (760)
+..+|.++. .|++..|+.+|.+++...|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 566666666 56666666666666665543
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.43 E-value=1.7e-12 Score=114.66 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=113.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcH
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 422 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 422 (760)
.|.++.+++.+|.++...|++++|+.+|.+++...| .++.+++.+|.++...|++++|+.+|++++.. .|.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~ 84 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-----KDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFI 84 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCch
Confidence 466788999999999999999999999999999998 78999999999999999999999999999996 67789
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
.+++.+|.++...|++++|+.+|.+++.++|.+..+++.++.++...
T Consensus 85 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 85 KGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987654
No 150
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.43 E-value=4.2e-12 Score=129.68 Aligned_cols=175 Identities=10% Similarity=0.039 Sum_probs=141.6
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQ 83 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 83 (760)
.+...+..++..|+|++|+.+|++++...|..+. .+..+|.++...|++++|+.+|.+++.+.+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3445688899999999999999999998777654 33458999999999999999999999865432 34
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccc
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGE--EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 160 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 160 (760)
++..+|.+|. .|+++.|+.+|.+++......+. .....+++++|.+|..+|+|++|+.++.+++.+.+..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~------- 229 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI------- 229 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc-------
Confidence 7899999998 88999999999999987655421 1135689999999999999999999999999753211
Q ss_pred hhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHc
Q 004339 161 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKY 227 (760)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~ 227 (760)
...+..+.+++++|.+|..+| .+++|+.+|++++.+.
T Consensus 230 ------------------------------~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 230 ------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp ------------------------------TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ------------------------------CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 123345789999999999999 4799999999998653
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.1e-11 Score=132.11 Aligned_cols=211 Identities=9% Similarity=0.088 Sum_probs=173.8
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-----------------ETLKALGHIYVQLGQIEKAQELLRKAAK 76 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 76 (760)
|.+.+..|..+...|+|.+|+..|.+++...|... .++..+|.+|...|++++|+.+|.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999887642 4689999999999999999999999988
Q ss_pred cCCCcH------HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 77 IDPRDA------QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 77 ~~p~~~------~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
..+... .+...++.++. .|+++.|+.++..++...+...... ...++..+|.+|...|+|.+|+.++..++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 755432 23455677776 6799999999999999988765433 467899999999999999999999999876
Q ss_pred ccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 149 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 228 (760)
Q Consensus 149 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 228 (760)
... .....+....++..+|.+|...|++.+|..+|.+++...+
T Consensus 164 ~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 164 EFK-------------------------------------KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHT-------------------------------------TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHH-------------------------------------hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 321 1124556778999999999999999999999999987643
Q ss_pred ---Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 229 ---DY----VDAYLRLAAIAKARNNLQLSIELVNEALKVN 261 (760)
Q Consensus 229 ---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 261 (760)
.. ...+..+|.++...+++.+|..+|..++...
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 207 SIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 22 3456778888889999999999999988753
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.42 E-value=2.8e-12 Score=112.73 Aligned_cols=121 Identities=14% Similarity=0.136 Sum_probs=113.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcH
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 422 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 422 (760)
+|.++.++..+|.++...|+++.|+.+|.+++...| .++.++..+|.++...|++++|+.+|.+++.. .|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 80 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-----ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYS 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCH
Confidence 455678899999999999999999999999999998 78999999999999999999999999999996 67779
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.+++.+|.++...|++++|+.+|.+++.+.|.++.+++.++.++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 81 KAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999987654
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.42 E-value=8e-13 Score=123.81 Aligned_cols=129 Identities=14% Similarity=0.169 Sum_probs=115.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-Hc-cC
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL-LI-SS 95 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~-~~ 95 (760)
+..+..+...|++++|+..|++++..+|.++.+++.+|.+|...|++++|+.+|.+++.++|.++.++..+|.+ +. .|
T Consensus 14 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 14 RDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS 93 (177)
T ss_dssp STTTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 33344467889999999999999999999999999999999999999999999999999999999999999999 75 78
Q ss_pred CH--hHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 96 DT--GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 96 ~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
++ ..|+.+|.+++.+.|.+ +.+++.+|.+|...|++++|+.+|.+++...|
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNE-----ITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred CcchHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 88 99999999999999986 89999999999999999999999999998654
No 154
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=1.3e-11 Score=137.08 Aligned_cols=137 Identities=8% Similarity=0.011 Sum_probs=128.8
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC-CHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG-NFA 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g-~~~ 403 (760)
..+++++.++.+++..+|.+..+|+..++++...| ++++|+.++.++++.+| .+..+|...+.++...| .++
T Consensus 87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-----~N~~aW~~R~~~l~~l~~~~~ 161 (567)
T 1dce_A 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-----RNFHCWDYRRFVAAQAAVAPA 161 (567)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTCCCHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-----ccccHHHHHHHHHHHcCCChH
Confidence 34899999999999999999999999999999999 66999999999999999 89999999999999999 999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEA--------------EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
+++.++.+++.. +|.+..+|.+++.++..+ +.+++|++++.+|+.++|++..+|+.++.++...
T Consensus 162 ~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 162 EELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp HHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHH--CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence 999999999995 888999999999999986 7789999999999999999999999999998654
Q ss_pred H
Q 004339 470 S 470 (760)
Q Consensus 470 ~ 470 (760)
+
T Consensus 240 ~ 240 (567)
T 1dce_A 240 E 240 (567)
T ss_dssp C
T ss_pred C
Confidence 3
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.41 E-value=7.3e-12 Score=108.94 Aligned_cols=120 Identities=23% Similarity=0.403 Sum_probs=109.8
Q ss_pred CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc
Q 004339 343 HTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 343 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 421 (760)
+|.. ..+++.+|.++...|+++.|+.+|.+++...| .++.+++.+|.++...|++++|+.+|++++.. .|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~ 76 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNN 76 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCcc
Confidence 4555 77899999999999999999999999999998 78999999999999999999999999999996 6777
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
+.+++.+|.+|...|++++|+.+|.+++.+.|.++.++.+++.++...
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999987543
No 156
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.41 E-value=5.9e-12 Score=121.71 Aligned_cols=135 Identities=12% Similarity=0.089 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
....++.+|.++...|++++|+..|.+++ .| ++.+++.+|.++...|++++|+.+|.+++..+|.++.+++.+|.+|
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 45578899999999999999999999996 33 7889999999999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHhhhcCCCCC---------------hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHH
Q 004339 276 LKNDDWVKAKETFRAASDATDGKD---------------SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 340 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al 340 (760)
...|++++|+.+|.+++...|... ..+++.+|.+ |... |+++.|+.+|.+++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al 148 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM-YAKK------------EEWKKAEEQLALAT 148 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH-HHHc------------cCHHHHHHHHHHHH
Confidence 999999999999999999877622 2677777777 7777 88888888888888
Q ss_pred hhCCCC
Q 004339 341 VQHTSN 346 (760)
Q Consensus 341 ~~~p~~ 346 (760)
...|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 887765
No 157
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=6e-12 Score=139.79 Aligned_cols=180 Identities=11% Similarity=0.026 Sum_probs=164.8
Q ss_pred HHHHcCCH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 206 LLEQIHDT-VAASVLYRLILFKYQDYVDAYLRLAAIAKARNN----------LQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 206 ~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.....|.+ ++|+..+.+++..+|.+..+|...+.++...|+ +++++.++.+++..+|++..+|+..+.+
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33445544 678999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HhhcC--CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhh-cHHHHHHHHHHHHhhCCCCHHHHH
Q 004339 275 ELKND--DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT-HLEKAKELYTRVIVQHTSNLYAAN 351 (760)
Q Consensus 275 ~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~ 351 (760)
+...+ +|.+++.++.+++...|. +..+|...+.+ +... | .+++++.++.+++..+|.+..+|+
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~-l~~l------------~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFV-AAQA------------AVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------CCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHH-HHHc------------CCChHHHHHHHHHHHHHCCCCccHHH
Confidence 99999 779999999999999988 89999999988 7776 7 899999999999999999999999
Q ss_pred HHHHHHHHc--------------CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 004339 352 GAGVVLAEK--------------GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 352 ~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 404 (760)
.++.++... +.+++|+.++.+++.++| .+..+|+.++.++...+.+.+
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-----~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-----NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-----SCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-----CCccHHHHHHHHHhcCCCccc
Confidence 999999875 567999999999999999 889999999999999888655
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.41 E-value=4.6e-12 Score=116.68 Aligned_cols=117 Identities=13% Similarity=0.206 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH------------------hcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEA------------------ASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
+..+..+|..++..|+|.+|+..|.+++.+ .| ..+.+|+++|.+|..+|+|++|+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR-----KNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHH-----THHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH-----HHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 457888999999999999999999999999 55 6788999999999999999999999
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-hHHhhHHHHHHHHH
Q 004339 409 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY-TLRFDAGVAMQKFS 470 (760)
Q Consensus 409 ~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~ 470 (760)
|.+++.. +|.++.+++.+|.+|..+|++++|+..|.+++.++|+++ .+...++.+.....
T Consensus 86 ~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 86 SSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999997 788899999999999999999999999999999999998 77777877765544
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.40 E-value=5.6e-12 Score=112.22 Aligned_cols=120 Identities=13% Similarity=0.144 Sum_probs=108.4
Q ss_pred hhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC
Q 004339 341 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420 (760)
Q Consensus 341 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 420 (760)
..+|.++..+..+|.++...|++++|+.+|.+++...| .++.+++++|.++..+|+++.|+..|++++.. .|.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~ 75 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQ 75 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Cch
Confidence 34678899999999999999999999999999999999 88999999999999999999999999999997 677
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----ChhHHhhHHHHHH
Q 004339 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS-----NYTLRFDAGVAMQ 467 (760)
Q Consensus 421 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~ 467 (760)
++.+++.+|.+|...|++++|+.+|.+++.+.|+ +..++..+..+..
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998 5666666666543
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.40 E-value=2.2e-12 Score=114.88 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC-------CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc--
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-------SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY-- 417 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-- 417 (760)
...+..+|..+...|+|++|+..|.+++.+.|. ...|.++.+|.++|.++..+|+|++|+..|.+++.+|.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456788999999999999999999999999994 11111344999999999999999999999999999621
Q ss_pred ---CCCcHHHH----HHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 418 ---YNTDAQIL----LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 418 ---~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
+|.++.+| +++|.++..+|++++|+..|++++++.|++..+.-.+..+...
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56778999 9999999999999999999999999999999888888776544
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.39 E-value=5.6e-13 Score=145.06 Aligned_cols=137 Identities=15% Similarity=0.212 Sum_probs=125.3
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc---------------hHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM---------------PDVWIN 391 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---------------~~~~~~ 391 (760)
+++++|+..|..++...|....++..+|.++...|+|..|+..|.+++.+.| .+ ..+|++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p-----~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE-----MEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-----TCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-----ccccCChHHHHHHHHHHHHHHHH
Confidence 6778888888888888999999999999999999999999999999999998 55 689999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 392 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+|.||..+|+|++|+..|.+++.. .|.++.+++.+|.+|..+|++++|+.+|++++.++|++..++.+++.++..++
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 77889999999999999999999999999999999999999999999987776
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.39 E-value=3.1e-12 Score=113.98 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=95.0
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-------NCE-----TLKALGHIYVQLGQIEKAQELLRKAAKI---- 77 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 77 (760)
+..++.+|..++..|+|++|+..|+++|.++|+ +.. +|.++|.++..+|+|++|+..|.++|.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456899999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---CCCcHHHH----HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcC
Q 004339 78 ---DPRDAQAF----IDLGELLI-SSDTGAALDAFKTARTLLKKAG 115 (760)
Q Consensus 78 ---~p~~~~~~----~~la~~~~-~~~~~~A~~~~~~al~~~~~~~ 115 (760)
+|+++.+| +++|.++. .|++++|+..|++++.+.|.+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 99999999 99999988 8899999999999999999874
No 163
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.39 E-value=9.1e-12 Score=108.33 Aligned_cols=120 Identities=29% Similarity=0.500 Sum_probs=110.9
Q ss_pred CCCC-chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 10 PHEF-IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 10 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
+|.. +.+++.+|.++...|+++.|+.+|.+++...|.++.+++.+|.++...|++++|+.+|.+++...|.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4544 778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 134 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 134 (760)
|.++. .|++..|+.+|.+++.+.|.. +.++..+|.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNN-----AEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHhcc
Confidence 99988 789999999999999999886 889999999987764
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.39 E-value=1.9e-12 Score=112.51 Aligned_cols=101 Identities=22% Similarity=0.179 Sum_probs=92.2
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
...++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.++.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cCCHhHHHHHHHHHHHHHHhc
Q 004339 94 -SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~ 114 (760)
.|++.+|+..|++++.+.|..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 789999999999999998875
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.38 E-value=1.4e-11 Score=106.00 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHH
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 425 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 425 (760)
.+.+++.+|.++...|++++|+.+|.+++...| .++.+++.+|.++...|++++|+..|++++.. .|.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 75 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHH
Confidence 356788999999999999999999999999998 78999999999999999999999999999997 67789999
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 426 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 426 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
+.+|.++...|++++|+.+|.+++.+.|+++.++..++.+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999888764
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.37 E-value=6.2e-12 Score=109.29 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 428 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l 428 (760)
.++.+|.++...|++++|+..|.+++..+| .++.+|+.+|.++...|++++|+..|++++.. .|.++.+++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~l 91 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-----EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAAL 91 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 467899999999999999999999999999 88999999999999999999999999999997 78889999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 429 ARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 429 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
|.+|...|++++|+.+|++++.++|.+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999999999998653
No 167
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.36 E-value=8.5e-12 Score=119.42 Aligned_cols=165 Identities=19% Similarity=0.191 Sum_probs=117.5
Q ss_pred hhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh------hCCCCHHH
Q 004339 276 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV------QHTSNLYA 349 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~ 349 (760)
+..|++.+|...+..+.. .|.....++..+|.+ |... |+++.|+.+|.+++. ..|....+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYV-YAFM------------DRFDEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHH-HHHh------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 345566666663333322 232345566666666 6666 666666666666666 33345667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 423 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 423 (760)
+..+|.++...|++++|+.+|.+++.+..... .+ ....++.++|.++...|++++|+.+|++++.......+ ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 88899999999999999999999998843110 01 23567899999999999999999999999987544444 45
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
++..+|.++...|++++|+.+|.+++.+...
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999987643
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.36 E-value=1.1e-11 Score=118.69 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=130.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHc-cC
Q 004339 24 QLKLGDFRSALTNFEKVLEIYP-DNCETLKALGHIYVQLGQIEKAQELLRKAAK------IDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~-~~ 95 (760)
++..|+|.+|...++.+.. +| ..+.++..+|.++...|++++|+.+|.+++. ..|....++..+|.++. .|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4678999999996665544 45 5688999999999999999999999999998 44556778999999988 88
Q ss_pred CHhHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 96 DTGAALDAFKTARTLLKKAGEE--VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
+++.|+.+|.+++.+....+.. ....++.++|.++...|++++|+.+|.+++...+..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------------- 140 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-------------------- 140 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--------------------
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--------------------
Confidence 9999999999999996654321 236778999999999999999999999998632100
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 227 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 227 (760)
........++..+|.++...|++++|+.+|.+++.+.
T Consensus 141 -----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 141 -----------------DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------------cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 0111234567889999999999999999999988764
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.35 E-value=4.4e-12 Score=116.83 Aligned_cols=117 Identities=14% Similarity=0.182 Sum_probs=106.7
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEI------------------YPDNCETLKALGHIYVQLGQIEKAQELLRKA 74 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 74 (760)
.+..+..+|..++..|+|.+|+.+|.+++.. +|.++.+|+.+|.+|..+|++.+|+..|.++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567899999999999999999999999998 7777899999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcC
Q 004339 75 AKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKG 134 (760)
Q Consensus 75 l~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~la~~~~~~g 134 (760)
+.++|.++.+|+.+|.++. .|+++.|+..|.+++.+.|.+ . .+...++.+....+
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~-----~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA-----ASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHH
Confidence 9999999999999999999 899999999999999999997 5 66777777665543
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.34 E-value=2.1e-12 Score=140.50 Aligned_cols=166 Identities=11% Similarity=0.037 Sum_probs=133.5
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
+++..|+..|..++...|.. +..++.+|.+|+..|+|..|+..|.+++.+.|........ ..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~-----a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~----------~~--- 309 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQ-----AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK----------ES--- 309 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH----------HH---
T ss_pred hhcccCcchhhcCHHHHHHH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChH----------HH---
Confidence 46778888888888888886 8899999999999999999999999999865532110000 00
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 254 (760)
....+....+++++|.+|..+|++++|+.+|.+++.++|.++.+++++|.+|..+|++++|+..|
T Consensus 310 ---------------~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~ 374 (457)
T 1kt0_A 310 ---------------KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374 (457)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 00223346899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHH-HHHhhh
Q 004339 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKET-FRAASD 293 (760)
Q Consensus 255 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~ 293 (760)
.+++.++|++..++..++.++...+++.+|... |.+++.
T Consensus 375 ~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 375 EKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999887754 444443
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=8.5e-11 Score=127.26 Aligned_cols=208 Identities=11% Similarity=0.073 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----------------DAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
|.+.+..|..+...|+|.+|+..|..++...|... .++..+|.+|...|++++|+.++..++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677789999999999999999999998877532 4688999999999999999999999998
Q ss_pred HcCCChH------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC-----CChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 260 VNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 260 ~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
..+.... +...++.++...|+++.|+.++..++...+. ....++..+|.+ |... |+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~ 150 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATL-HYQK------------KQ 150 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH-HHHH------------TC
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-HHHc------------cC
Confidence 8665433 5667889999999999999999998875321 135677889999 9998 99
Q ss_pred HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHcC
Q 004339 329 LEKAKELYTRVIVQ------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV--QMPDVWINLAHVYFAQG 400 (760)
Q Consensus 329 ~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~la~~~~~~g 400 (760)
+.+|+.++..++.. .|....++..+|.+|...|++.+|..+|++++.+.+....+ ....++..+|.++...|
T Consensus 151 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (434)
T 4b4t_Q 151 YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDK 230 (434)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSS
T ss_pred hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 23346689999999999999999999999999887632211 12457788899999999
Q ss_pred CHHHHHHHHHHHHhhhc
Q 004339 401 NFALAMKMYQNCLRKFY 417 (760)
Q Consensus 401 ~~~~A~~~~~~al~~~~ 417 (760)
+|..|..+|..++..+.
T Consensus 231 ~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 231 DYKTAFSYFFESFESYH 247 (434)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 99999999999988653
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.33 E-value=1.7e-11 Score=105.34 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=106.2
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
.+..++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|.+++..+|.++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 130 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 130 (760)
. .|++..|+..|.+++.+.|.+ +.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANN-----PQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTC-----HHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCC-----HHHHHHHHHhh
Confidence 8 889999999999999999886 78888887765
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=3.1e-11 Score=108.72 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=110.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004339 342 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM---PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 342 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 418 (760)
..|.+...++.+|.++...|++..|+.+|.+++...| .+ +.+++++|.+|...|++++|+..|.+++.. .
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~ 95 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-----TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--D 95 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--T
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-----cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--C
Confidence 4578899999999999999999999999999999988 65 899999999999999999999999999997 6
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 419 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 419 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
|.++.+++.+|.+|..+|++++|+.+|.+++.++|++..++..++.+.
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 777999999999999999999999999999999999999988877763
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.32 E-value=1.4e-11 Score=104.89 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=99.2
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--DAQAFI 86 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 86 (760)
.+|+++.+++.+|.+++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|++++..+|. ++.++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHc-c-CCHhHHHHHHHHHHHHHHhc
Q 004339 87 DLGELLI-S-SDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 87 ~la~~~~-~-~~~~~A~~~~~~al~~~~~~ 114 (760)
.+|.++. . |++.+|+.++.+++...|..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999988 8 89999999999988877754
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-11 Score=111.36 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=112.1
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
.+..+|..+..++.+|..++..|+|..|+.+|++++..+|++ ..+++.+|.+|...|++++|+.+|.+++.++|.++
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 20 PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp CCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH
T ss_pred CCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH
Confidence 345667889999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004339 83 QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 132 (760)
Q Consensus 83 ~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 132 (760)
.+++.+|.++. .|++..|+.+|.+++.+.|.+ ..++..++.+...
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~ 145 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN-----KVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC-----HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHhh
Confidence 99999999998 899999999999999999886 7888877776543
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.31 E-value=3.5e-11 Score=105.72 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=102.4
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD---AQAFID 87 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 87 (760)
+.+++.+|.+++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+.+|.+++..+|++ +.+++.
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 35689999999999999999999999999999988 899999999999999999999999999999999 889999
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 133 (760)
+|.++. .|+++.|+..|++++...|.+ +.+...+..+....
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGS-----DAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTS-----HHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC-----hHHHHHHHHHHHHH
Confidence 999998 889999999999999999886 55555555444333
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.29 E-value=3.6e-11 Score=105.49 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CCc---
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-NTD--- 421 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~--- 421 (760)
.+.+++.+|.++...|+++.|+.+|.+++...| .++.+++.+|.++...|++++|+.+|.+++...+. +.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 456789999999999999999999999999998 78999999999999999999999999999998543 222
Q ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 422 -AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 422 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+.+++.+|.+|...|++++|+.+|.+++.+.| ++.++..++.++..+.
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999 6888888888866554
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.29 E-value=5.4e-11 Score=104.47 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc---H
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP---DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---A 422 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~ 422 (760)
+++.+|.++...|++++|+..|.+++...| .++ .+++.+|.++...|++++|+..|++++.. .|.+ +
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~ 76 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-----NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAA 76 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-----CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccH
Confidence 467899999999999999999999999998 445 89999999999999999999999999997 4555 8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
.+++.+|.+|..+|++++|+.+|++++...|+++.+...+..+
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 8999999999999999999999999999999998776655544
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.28 E-value=4.5e-12 Score=138.43 Aligned_cols=130 Identities=13% Similarity=0.096 Sum_probs=117.0
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
+..+.+++.+|.+++..|+|++|+.+|++++..+|.++.++..+|.+|..+|++++|+.+|++++.++|.++.+++.+|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI--HFEKGEFESAHQSFKD 145 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~ 145 (760)
+|. .|++++|+..|++++.+.|.. ..++..++.+ +...|++++|+..+.+
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTC-----TTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 998 899999999999999999986 5788888888 8899999999999984
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.25 E-value=6.9e-11 Score=107.99 Aligned_cols=142 Identities=11% Similarity=0.050 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004339 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQV 373 (760)
Q Consensus 300 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 373 (760)
..++..+|.+ |+.. |+++.|+.+|.+++...+.. ..++..+|.++...|++++|+.+|.++
T Consensus 9 ~~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 9 GRAFGNLGNT-HYLL------------GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567788888 8888 99999999999999876532 248899999999999999999999999
Q ss_pred HHHhcCCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 374 QEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 374 l~~~p~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
+...+... .+....++.++|.++...|++++|+.+|++++.......+ +.++..+|.+|...|++++|+.++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99876221 1123668999999999999999999999999987543333 678889999999999999999999999
Q ss_pred HHhCCC
Q 004339 449 IHLAPS 454 (760)
Q Consensus 449 l~~~p~ 454 (760)
+.+...
T Consensus 156 ~~~~~~ 161 (164)
T 3ro3_A 156 LEISRE 161 (164)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 987654
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.25 E-value=2.8e-12 Score=140.07 Aligned_cols=129 Identities=12% Similarity=0.134 Sum_probs=113.7
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
|++++|+.+|++++..+|.+..++.++|.+|...|++++|+.+|.+++++.| .++.+++++|.+|..+|++++|+
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----KYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 88999999999999999999999
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHH--HHHhccHHHHHHHHH-----------HHHHhCCCChhHHhhH
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLART--HYEAEQWQDCKKSLL-----------RAIHLAPSNYTLRFDA 462 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~~~~~l 462 (760)
..|++++.. .|.+..++..++.+ +...|++++|+..++ +++.+.|.....++..
T Consensus 95 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 161 (477)
T 1wao_1 95 RDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLED 161 (477)
T ss_dssp HHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGG
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccccc
Confidence 999999997 56666777888887 899999999999999 8888888775554443
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.25 E-value=3.1e-11 Score=105.98 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=104.4
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------HHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-------AQA 84 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 84 (760)
..+..++.+|.+++..|+++.|+.+|.+++..+|.++.+++.+|.++...|++++|+.+|.+++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999998876 889
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 134 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 134 (760)
++.+|.++. .|++..|+.+|.+++.+.|+ +.++..++.++...+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT------PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHH
Confidence 999999988 78999999999999998773 677777777765543
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.25 E-value=6.3e-11 Score=100.72 Aligned_cols=105 Identities=9% Similarity=-0.072 Sum_probs=101.3
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC--ChHHHHH
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSM 270 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 270 (760)
+|.++.+++.+|.++...|++++|+.+|.+++...|.+..+++.+|.++...|++++|+.+|.+++...|. ++.++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhhc-CCHHHHHHHHHHhhhcCCC
Q 004339 271 LGDLELKN-DDWVKAKETFRAASDATDG 297 (760)
Q Consensus 271 la~~~~~~-g~~~~A~~~~~~al~~~~~ 297 (760)
+|.++... |++++|+.+|..++...|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999999 9999999999999998876
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.22 E-value=4.3e-11 Score=106.33 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=92.0
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF----------DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~ 396 (760)
+.|++|+..|++++.++|+++.+|+++|.++...+++ ++|+..|++++.++| +.+.+|+++|.+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-----~~~~A~~~LG~ay 90 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-----KKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHH
Confidence 8999999999999999999999999999999998875 599999999999999 8899999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 397 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
..+|.+ .|..+.. .|++++|+.+|++|+.++|++...+..+..+
T Consensus 91 ~~lg~l---------------~P~~~~a----------~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 91 TSFAFL---------------TPDETEA----------KHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHH---------------CCCHHHH----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhccc---------------Ccchhhh----------hccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 988754 2333222 4888899999999999999887655554443
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.21 E-value=5.7e-11 Score=105.53 Aligned_cols=121 Identities=9% Similarity=0.049 Sum_probs=90.1
Q ss_pred HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhhcCCCcHHHHHH
Q 004339 358 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF----------ALAMKMYQNCLRKFYYNTDAQILLY 427 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~ 427 (760)
.+.+.|++|+..|.++++++| .++.+|+++|.++..++++ ++|+..|++++.+ +|....+|++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-----~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-----LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHH
Confidence 356779999999999999999 8999999999999999875 4888888888886 7778888888
Q ss_pred HHHHHHHhcc----HHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhh
Q 004339 428 LARTHYEAEQ----WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA 503 (760)
Q Consensus 428 la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~ 503 (760)
+|.+|..+|. +..|...|.+|+. .|..|+- ....-..+..++.....|.+++-.+..
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~--------~~~kAl~-----------l~P~~~~y~~al~~~~ka~el~~~~~~ 146 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQ--------FFQQAVD-----------EQPDNTHYLKSLEMTAKAPQLHAEAYK 146 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHH--------HHHHHHH-----------HCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHH--------HHHHHHH-----------hCCCCHHHHHHHHHHHhCHhccCcccc
Confidence 8888888874 3445555555544 1111111 122235777888888888888777765
Q ss_pred c
Q 004339 504 A 504 (760)
Q Consensus 504 ~ 504 (760)
.
T Consensus 147 ~ 147 (158)
T 1zu2_A 147 Q 147 (158)
T ss_dssp S
T ss_pred c
Confidence 4
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.20 E-value=1.5e-11 Score=128.08 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCC
Q 004339 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL-----------------YAANGAGVVLAEKGQ 362 (760)
Q Consensus 300 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~ 362 (760)
...+..+|.. ++.. |++..|+.+|.+++.+.|.+. .+++++|.+|...|+
T Consensus 179 a~~~~~~g~~-~~~~------------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 179 ADRRKMDGNS-LFKE------------EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHHH-TCSS------------SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHH-HHhc------------CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556777877 7777 999999999999999999877 388899999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH-HHhccHHHH
Q 004339 363 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH-YEAEQWQDC 441 (760)
Q Consensus 363 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~-~~~g~~~~A 441 (760)
|++|+.+|.+++.++| .++.+|+++|.+|..+|++++|+..|++++.+ .|.+..++..|+.+. ...+....+
T Consensus 246 ~~~A~~~~~~al~~~p-----~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEE-----KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp CHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 78899999999999999999999999999886 567788888888884 456677888
Q ss_pred HHHHHHHHHhCCCChh
Q 004339 442 KKSLLRAIHLAPSNYT 457 (760)
Q Consensus 442 ~~~~~~al~~~p~~~~ 457 (760)
...|.+++...|.++.
T Consensus 319 ~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 319 KEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------
T ss_pred HHHHHHhhCCCCCCCC
Confidence 8899999998887653
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.19 E-value=3.3e-11 Score=125.45 Aligned_cols=143 Identities=17% Similarity=0.088 Sum_probs=96.0
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----------------DAYLRLAAIAKARNNLQLSIELVN 255 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~ 255 (760)
.+..+..++.+|.+++..|+|.+|+..|.+++...|.+. .+++++|.++...|++++|+.+|.
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345677899999999999999999999999999999876 489999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHH
Q 004339 256 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 335 (760)
Q Consensus 256 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 335 (760)
+++.++|+++.+++.+|.+|...|++++|+.+|.+++.+.|. +..++..++.+..... +....+...
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~------------~~~~~a~~~ 321 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEK------------ALYQKQKEM 321 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 999999999999999999999999999999999999999887 6777777777622233 677888899
Q ss_pred HHHHHhhCCCCHH
Q 004339 336 YTRVIVQHTSNLY 348 (760)
Q Consensus 336 ~~~al~~~p~~~~ 348 (760)
|.+++...|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999998887653
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.19 E-value=3.4e-10 Score=119.09 Aligned_cols=117 Identities=12% Similarity=0.148 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------HhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQE----------------AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 410 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (760)
...+..+|.++...|++++|+..|.+++. ..| ..+.+|+++|.+|..+|+|++|+.+|+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-----VALSCVLNIGACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-----HHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34678899999999999999999999999 555 678999999999999999999999999
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 411 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 411 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+++.. .|.++.+++.+|.+|..+|++++|+.+|++|+.++|++..++..++.++..++
T Consensus 298 ~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 298 EALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99996 67889999999999999999999999999999999999999999999987766
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.18 E-value=1.2e-10 Score=106.33 Aligned_cols=138 Identities=22% Similarity=0.229 Sum_probs=118.3
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD---- 81 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 81 (760)
..+.+++.+|.+++..|++++|+.+|.+++...|.. ..++..+|.++...|++++|+.+|.+++.+.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 345678999999999999999999999999876542 2589999999999999999999999999875442
Q ss_pred --HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004339 82 --AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 149 (760)
Q Consensus 82 --~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 149 (760)
..++..+|.++. .|+++.|+.++.+++.+.+..+.. ....++..+|.+|...|++++|+.++.+++..
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 567889999988 889999999999999987664321 12567899999999999999999999999874
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.17 E-value=1.1e-10 Score=122.75 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=115.8
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHH----------------HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLE----------------IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 77 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 77 (760)
+..++.+|..++..|+|++|+.+|++++. .+|.++.+|..+|.+|..+|++++|+.+|.+++.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34588999999999999999999999998 77788899999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 78 DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 142 (760)
Q Consensus 78 ~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 142 (760)
+|.++.+++.+|.+|. .+++++|+..|++++.+.|.+ ..++..++.++...+++.++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-----~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-----KAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 889999999999999999986 89999999999999988877654
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.17 E-value=8.3e-11 Score=101.44 Aligned_cols=93 Identities=12% Similarity=0.288 Sum_probs=61.4
Q ss_pred cCChHHHHHHHHHHHHH---hcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc
Q 004339 360 KGQFDVSKDLFTQVQEA---ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 436 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 436 (760)
.|++++|+.+|.+++.. +| .++.+++++|.+|..+|++++|+..|++++.. .|.++.+++.+|.+|..+|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGK-----DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCCCc-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcC
Confidence 46666677777777766 45 56667777777777777777777777777765 4555677777777777777
Q ss_pred cHHHHHHHHHHHHHhCCCChhHH
Q 004339 437 QWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 437 ~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
++++|+.+|.+++...|+++.+.
T Consensus 76 ~~~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHH
Confidence 77777777777777777666544
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.14 E-value=1.7e-10 Score=99.48 Aligned_cols=99 Identities=10% Similarity=0.075 Sum_probs=85.0
Q ss_pred HcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcC
Q 004339 132 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 211 (760)
Q Consensus 132 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g 211 (760)
.+|++++|+.+|.+++..++ .+|.++.+++.+|.+|...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~----------------------------------------~~p~~~~~~~~lg~~~~~~~ 41 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL----------------------------------------QGKDLAECYLGLGSTFRTLG 41 (117)
T ss_dssp -----CCCHHHHHHHHSSCC----------------------------------------CHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHcCC----------------------------------------CCccHHHHHHHHHHHHHHcC
Confidence 36889999999999987321 15778899999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 212 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 212 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
++++|+.+|.+++..+|+++.+++.+|.++...|++++|+.+|.+++...|+++.+...
T Consensus 42 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 42 EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876543
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.08 E-value=1.3e-09 Score=93.53 Aligned_cols=101 Identities=20% Similarity=0.167 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 331 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 410 (760)
Q Consensus 331 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (760)
.|+..|.+++..+|.++.+++.+|.+|...|++++|+.+|.+++...| .++.+|+.+|.+|...|++++|+..|+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777 667777777777777777777777777
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHhc
Q 004339 411 NCLRKFYYNTDAQILLYLARTHYEAE 436 (760)
Q Consensus 411 ~al~~~~~~~~~~~~~~la~~~~~~g 436 (760)
+++...+...+......+...+..+|
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHhc
Confidence 77776544444444444444444333
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.00 E-value=2.1e-09 Score=87.41 Aligned_cols=84 Identities=33% Similarity=0.569 Sum_probs=76.5
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 004339 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 89 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (760)
+|.++.+++.+|.+++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|.+++.++|.++.++..+|
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHc
Q 004339 90 ELLI 93 (760)
Q Consensus 90 ~~~~ 93 (760)
.++.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.99 E-value=4.5e-09 Score=90.06 Aligned_cols=83 Identities=25% Similarity=0.280 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHH
Q 004339 32 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTL 110 (760)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~ 110 (760)
.|+..|++++..+|.++.+++.+|.+|...|++++|+.+|++++.++|.++.+|+.+|.++. .|++..|+..|.+++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999988 78999999999999999
Q ss_pred HHhc
Q 004339 111 LKKA 114 (760)
Q Consensus 111 ~~~~ 114 (760)
.|..
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8875
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.97 E-value=5.8e-10 Score=94.73 Aligned_cols=88 Identities=13% Similarity=0.149 Sum_probs=75.2
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFI 86 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 86 (760)
.+.+++.+|.+++..|+|++|+.+|++++..+|.++.+++.+|.++..+|++++|+..|.+++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999988 55566
Q ss_pred HHHHHHc-cCCHhHH
Q 004339 87 DLGELLI-SSDTGAA 100 (760)
Q Consensus 87 ~la~~~~-~~~~~~A 100 (760)
.+|.++. .|++..|
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 6665554 3444333
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.94 E-value=5e-09 Score=87.18 Aligned_cols=89 Identities=12% Similarity=0.124 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcH
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 422 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 422 (760)
+|+++.+++.+|.+|...|++++|+.+|.+++.++| .++.+|+.+|.+|..+|++++|+..|++++...+...+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 577777777777777777777777777777777777 667777777777777777777777777777765444555
Q ss_pred HHHHHHHHHHHHhc
Q 004339 423 QILLYLARTHYEAE 436 (760)
Q Consensus 423 ~~~~~la~~~~~~g 436 (760)
.....+..++...+
T Consensus 78 ~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 78 KDLSELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcc
Confidence 55555554444433
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.92 E-value=1.2e-08 Score=82.78 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=80.5
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHH
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 272 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 272 (760)
.|..+.+++.+|.++...|++++|+.+|.+++...|.+..+++.+|.++...|++++|+.+|.+++..+|.++.++..+|
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC
Q 004339 273 DLELKND 279 (760)
Q Consensus 273 ~~~~~~g 279 (760)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9987654
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.91 E-value=1.4e-09 Score=92.30 Aligned_cols=96 Identities=8% Similarity=-0.080 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC------hHHHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALS 269 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 269 (760)
.+.+++.+|.++...|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|.+++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHh
Q 004339 270 MLGDLELKNDDWVKAKETFRAA 291 (760)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~a 291 (760)
.+|.++...|++..|+..|.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999988887777666544
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.89 E-value=3e-08 Score=87.97 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=105.3
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 402 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~----~g~~ 402 (760)
+++.+|+.+|+++....+.... +|.+|...+.+++|+.+|+++.+. .++.++++||.+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCCCCCccH
Confidence 7899999999999998754443 999999999999999999999986 459999999999999 8999
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChhHHhhHH
Q 004339 403 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLRFDAG 463 (760)
Q Consensus 403 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 463 (760)
.+|+.+|+++... .++.+++.||.+|.. .+++.+|+.+|++|.... ++.+.++|+
T Consensus 78 ~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 78 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 9999999999985 679999999999999 899999999999999884 445555544
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.88 E-value=5.8e-09 Score=86.77 Aligned_cols=72 Identities=28% Similarity=0.398 Sum_probs=56.9
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 80 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 80 (760)
.+|+++.+++.+|.+|+..|+|++|+.+|++++..+|.++.+|+.+|.+|...|++++|+..|++++.+.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 467788888888888888888888888888888888888888888888888888888888888888877654
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.87 E-value=6.5e-09 Score=86.22 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=82.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 95 (760)
.+.+|.+++..|++++|+..|++++..+|.++. +++.+|.+|...|++++|+.+|++++.++|+++.++.. +
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------~ 75 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------K 75 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------H
Confidence 578999999999999999999999999999999 99999999999999999999999999999999988744 4
Q ss_pred CHhHHHHHHHHHHHHHHhc
Q 004339 96 DTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~ 114 (760)
.+..++..|.+++...|..
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 5667788888888888865
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.75 E-value=4e-08 Score=106.27 Aligned_cols=126 Identities=10% Similarity=0.042 Sum_probs=107.7
Q ss_pred hcHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQ-----HTSN---LYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHV 395 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~ 395 (760)
|++++|+.+|++++.+ .|++ ..++++||.+|..+|+|++|+.++.+++.+.. +..+|.....+.+||.+
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 402 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLT 402 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999975 3444 45789999999999999999999999998854 44555677889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhh---cCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 396 YFAQGNFALAMKMYQNCLRKF---YYNTD---AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~---~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
|..+|+|++|+.+|++|+... ..+.+ ..+...++.++..+|.+.+|...|.++.+..
T Consensus 403 ~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 403 NWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 23333 6667799999999999999999999987654
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.72 E-value=3e-06 Score=82.34 Aligned_cols=106 Identities=9% Similarity=-0.002 Sum_probs=93.3
Q ss_pred CCcchHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHc-----CCHHHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQ---I--H------DTVAASVLYRLILFKYQD--YVDAYLRLAAIAKAR-----NNLQLSIEL 253 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~ 253 (760)
..|.++.++++.|.+... . | ....|...++++++++|. +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 567889999998887754 1 2 357899999999999999 456999999999995 999999999
Q ss_pred HHHHHHHcCCC-hHHHHHHHHHHhhc-CCHHHHHHHHHHhhhcCCC
Q 004339 254 VNEALKVNGKY-PNALSMLGDLELKN-DDWVKAKETFRAASDATDG 297 (760)
Q Consensus 254 ~~~al~~~p~~-~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 297 (760)
|++++.++|+. ..+++.+|..++.. |++..|..++++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999975 99999999999885 9999999999999998765
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.72 E-value=1.6e-07 Score=83.26 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
++.+|+.+|.++...... .+. +|.+ |... +.++.|+.+|+++... .++.+++.||.+|..
T Consensus 10 d~~~A~~~~~~aa~~g~~---~a~--lg~~-y~~g------------~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM---FGC--LSLV-SNSQ------------INKQKLFQYLSKACEL--NSGNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT---THH--HHHH-TCTT------------SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH---hhh--HHHH-HHcC------------CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHc
Confidence 566777777777665432 222 6666 6555 5666677777777765 567777777777776
Q ss_pred ----cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 360 ----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 360 ----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
.+++.+|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++... .++.+...|+
T Consensus 70 G~g~~~d~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~A~~~l~ 136 (138)
T 1klx_A 70 GKYVKKDLRKAAQYYSKACGL-------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL----GSEDACGILN 136 (138)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHC-
T ss_pred CCCCCccHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHh
Confidence 67788888888887765 347778888888887 77888888888888774 4455554444
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.69 E-value=3.4e-08 Score=81.73 Aligned_cols=91 Identities=10% Similarity=0.098 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD-VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+.+|.++...|++++|+..|.+++...| .++. +++++|.+|..+|++++|+..|++++.. .|.++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~-- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP-----VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR-- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-----STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--
Confidence 3456666666777777777777766666 5566 6666777777777777777777766665 3444444322
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCh
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 456 (760)
+.+.+|+..|.+++..+|+++
T Consensus 75 ------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 ------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp ------HHHHHHHHHHCCTTHHHHCCS
T ss_pred ------HHHHHHHHHHHHHhccCcccc
Confidence 455566666666666665543
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.64 E-value=3.2e-07 Score=99.19 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=110.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHH
Q 004339 125 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 204 (760)
Q Consensus 125 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la 204 (760)
..+..+..+|+|++|+..|++++.+.. ...-..+|....++.+||
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~-----------------------------------~~lg~~Hp~~a~~~~nLa 358 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQE-----------------------------------PVFADTNLYVLRLLSIAS 358 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHT-----------------------------------TTBCTTSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHH-----------------------------------HhcCCCCHHHHHHHHHHH
Confidence 344557789999999999999987310 111125667778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCCChH---HH
Q 004339 205 RLLEQIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPN---AL 268 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~ 268 (760)
.+|..+|+|++|+.++++++.+ +|.....+.+||.+|..+|++++|+.+|.+++.+ .|++|. +.
T Consensus 359 ~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 438 (490)
T 3n71_A 359 EVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE 438 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999965 3455667999999999999999999999999976 466665 56
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 269 SMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
..++.++..++.+.+|...|.++.+.
T Consensus 439 ~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 439 AMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999888653
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.63 E-value=1.6e-07 Score=76.23 Aligned_cols=73 Identities=10% Similarity=-0.041 Sum_probs=67.0
Q ss_pred CCCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 10 PHEFIFPYYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
+|+++..++.+|.+++..++ ..+|..+|++++..+|+++.+++.+|.+++..|+|.+|+.+|++++..+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68899999999999987766 79999999999999999999999999999999999999999999999998744
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.63 E-value=4e-07 Score=92.51 Aligned_cols=139 Identities=11% Similarity=-0.057 Sum_probs=109.5
Q ss_pred cCCCCCchh--hhhHHHHHHHcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC-------HHHHH-HHHHH-
Q 004339 8 NKPHEFIFP--YYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ-------IEKAQ-ELLRK- 73 (760)
Q Consensus 8 ~~~p~~~~~--~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~~A~-~~~~~- 73 (760)
...|.++.+ +|..|..++..+. +.+|+.+|+++++++|+++.++..++.+|..... ...++ ..+..
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 345665554 5678888887665 5889999999999999999999999888863211 11111 12222
Q ss_pred -HHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 74 -AAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 74 -al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
++..+|.++.++..++.++. .|+++.|+..+++++.++|. ...|..+|.++...|++++|+..|.+++.++|
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 23567899999999998777 89999999999999999864 67889999999999999999999999999776
Q ss_pred h
Q 004339 152 W 152 (760)
Q Consensus 152 ~ 152 (760)
.
T Consensus 342 ~ 342 (372)
T 3ly7_A 342 G 342 (372)
T ss_dssp S
T ss_pred C
Confidence 3
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.62 E-value=6.2e-07 Score=91.11 Aligned_cols=123 Identities=12% Similarity=0.087 Sum_probs=100.2
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---C-ChHHHHHHHHHHH------HHhcCCCCCCchHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK---G-QFDVSKDLFTQVQ------EAASGSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g-~~~~A~~~~~~al------~~~p~~~~~~~~~~~~~la~~~ 396 (760)
..+.+|+.+|+++++++|+++.++..++.+|... + ........+..++ ...| ..+.++..+|.++
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~-----~~a~~~~alal~~ 287 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN-----NLSIIYQIKAVSA 287 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT-----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC-----cCHHHHHHHHHHH
Confidence 6779999999999999999999999998888632 1 1111222222222 2334 7899999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 397 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
...|+++.|+..+++++.+ + ++...+..+|.++...|++++|+..|.+|+.++|..+.
T Consensus 288 l~~gd~d~A~~~l~rAl~L--n-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 288 LVKGKTDESYQAINTGIDL--E-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHTCHHHHHHHHHHHHHH--C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HhCCCHHHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 9999999999999999998 3 45778899999999999999999999999999998864
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.62 E-value=8.9e-06 Score=79.06 Aligned_cols=190 Identities=13% Similarity=0.039 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHcCCChHHHHHHH
Q 004339 214 VAASVLYRLILFKYQDYVDAYLRLAAIAKAR---------------------NNLQLSIELVNEALKVNGKYPNALSMLG 272 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------------------g~~~~A~~~~~~al~~~p~~~~~~~~la 272 (760)
.-.+.+++-++..+|.+.......+..|..- ..+..|..+|.++... ...+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH
Confidence 3456778888889999987766655554321 1233455555554431 1111
Q ss_pred HHHhhcCCHHHHHH-----HHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC--
Q 004339 273 DLELKNDDWVKAKE-----TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-- 345 (760)
Q Consensus 273 ~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 345 (760)
+......+.+++. -+..++......++..++..|.+ +...+...+.. ....+....|...++++++++|+
T Consensus 121 -L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~-~ss~a~~~~gg-~~Al~~l~~A~a~lerAleLDP~~~ 197 (301)
T 3u64_A 121 -LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTG-YVAAFALTPLG-SALPDTVHAAVMMLERACDLWPSYQ 197 (301)
T ss_dssp -HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHH-HHHHHTTSCTT-SCCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred -HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHH-HHHHHhcCCCC-hHHHHhHHHHHHHHHHHHHhCCCcc
Confidence 1111222332222 23444544444477777777766 54433322111 11226678899999999999999
Q ss_pred CHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhcC
Q 004339 346 NLYAANGAGVVLAEK-----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-GNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 346 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 418 (760)
+..+|..+|.+|... |+.++|..+|++++.++|+ .+..+++.+|..++.. |+++.|..++++++..-+.
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~----~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA----HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT----TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 566999999999884 8999999999999999982 2488889999988884 8899999999999986433
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.59 E-value=6.2e-07 Score=74.82 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=72.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-----NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
++.-.+.+|..++..|+|..|+.+|+.|+..... ...+.++..||.+|+++|+++.|+.++++++.+.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4677889999999999999999999999997632 24589999999999999999999999999999999999999
Q ss_pred hhHHHH
Q 004339 460 FDAGVA 465 (760)
Q Consensus 460 ~~la~~ 465 (760)
.|++.+
T Consensus 84 ~n~~~~ 89 (104)
T 2v5f_A 84 GNLKYF 89 (104)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 998854
No 213
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.46 E-value=1.6e-05 Score=86.69 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=136.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhC-CC
Q 004339 267 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TS 345 (760)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~ 345 (760)
++..+-..+.+.|++.+|+.+|..+....-..+..+|..+-.+ +.... ........+.++.|..+|....... +.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~-c~~~~---~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV-CSLAE---AATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH-HTTCC---CCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHhCC---chhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 3455566777888888888888888776544466666666554 33210 0000011266899999999987653 34
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHH
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 425 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 425 (760)
+..+|+.+...|...|++++|..+|..+....- . -+..+|..+...|...|++++|..+|...... .-.++..+|
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~---~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty 178 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI---Q-PRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPEL 178 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC---C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---C-CccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHH
Confidence 788999999999999999999999999987531 1 35788999999999999999999999999886 466788999
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 426 LYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 426 ~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
..|-.+|.+.|+.++|..+|++.....
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999987653
No 214
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.44 E-value=4.1e-05 Score=83.41 Aligned_cols=137 Identities=11% Similarity=-0.006 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Q 004339 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TSNLYAANGAGVVL 357 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 357 (760)
+....|..+|..+....-.++..+|..+... |... |+++.|..+|..+.... +.+..+|+.+...|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~-~~~~------------g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~ 150 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARL-AVAK------------DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGF 150 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhc------------CCHHHHHHHHHHHHHcCCCCccceehHHHHHH
Confidence 3467888889888876655588899999988 9998 99999999999988753 34788999999999
Q ss_pred HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 004339 358 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 433 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 433 (760)
...|++++|..+|..+....- . -+...|..+..+|...|++++|..+|++..... ..++..++..+-..+.
T Consensus 151 ~~~g~~~~A~~l~~~M~~~G~---~-Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 151 CRKGDADKAYEVDAHMVESEV---V-PEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHTTC---C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCC---C-CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHh
Confidence 999999999999999987542 1 357889999999999999999999999998864 3445555555544443
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=2.7e-06 Score=74.59 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHhccHH
Q 004339 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYN-TDAQILLYLARTHYEAEQWQ 439 (760)
Q Consensus 364 ~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~ 439 (760)
..+...|...+...| .+..+.+++|+++...+ ++.+++.+|+.++... .| ...+++|+||..|+++|+|.
T Consensus 15 ~~~~~~y~~e~~~~~-----~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHTTC-----CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHccCC-----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 445566666666555 56888888888888877 6668888888888851 13 34888999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 440 DCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 440 ~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
+|+.++++++++.|++..+..-...+-
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999998887766555543
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.35 E-value=2.7e-06 Score=70.91 Aligned_cols=77 Identities=25% Similarity=0.277 Sum_probs=69.0
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
++.-++.+|..++..|+|..|+.+|+.++... +..+.++..+|.+++++|+++.|+.++++++.+.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35568999999999999999999999999863 34578999999999999999999999999999999999887
Q ss_pred HHHH
Q 004339 86 IDLG 89 (760)
Q Consensus 86 ~~la 89 (760)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7765
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.28 E-value=4.2e-06 Score=67.75 Aligned_cols=70 Identities=21% Similarity=-0.007 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 004339 194 WNKVTVLFNLARLLEQIHD---TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 263 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 263 (760)
|.++.++..+|.+++..++ .++|..+|.+++..+|+++.+++.+|.+++..|+|.+|+.++++++..+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4445555555555544433 455555555555555555555555555555555555555555555555554
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.26 E-value=2.5e-06 Score=74.79 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=36.3
Q ss_pred CCCCchhhhhHHHHHHHcC---CHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 10 PHEFIFPYYGLGQVQLKLG---DFRSALTNFEKVLEIY-P-DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+|.+..+.|.+|.++.+.+ ++.+++.+|+.+++.+ | .+.++++.+|..++++|+|.+|+.+++.++++.|++..+
T Consensus 28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3444444555555555444 3344555555555444 3 234445555555555555555555555555555544443
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.24 E-value=4.9e-06 Score=88.38 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=70.4
Q ss_pred HcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh---cCCCc---HHHHHHHH
Q 004339 359 EKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF---YYNTD---AQILLYLA 429 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~---~~~~~~la 429 (760)
..|+|++|+.+|++++.+.. +..+|....++.+||.+|..+|+|++|+.+|++++..+ ..+.+ ...+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35678888888888887654 22333445667788888888888888888888887753 12222 56677888
Q ss_pred HHHHHhccHHHHHHHHHHHHHh-----CCCChhH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHL-----APSNYTL 458 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 458 (760)
.+|..+|++++|+.+|++|+.+ .|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 8888888888888888888765 4555543
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.19 E-value=6.5e-06 Score=87.47 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=78.7
Q ss_pred hcHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQ-----HTSNL---YAANGAGVVLAEKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHV 395 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~ 395 (760)
|++++|+.+|++++.+ .|+++ .++++||.+|..+|+|++|+.++++++.+.- +..+|.....+++||.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 8899999999999984 45554 4788999999999999999999999998753 44555677889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhh
Q 004339 396 YFAQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~ 416 (760)
|..+|+|++|+.+|++|+..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHH
Confidence 999999999999999999874
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.18 E-value=7.9e-06 Score=87.03 Aligned_cols=104 Identities=8% Similarity=0.095 Sum_probs=83.2
Q ss_pred HHHHcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh---cCCCc---HHHHH
Q 004339 356 VLAEKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF---YYNTD---AQILL 426 (760)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~---~~~~~ 426 (760)
-+...|+|++|+..|++++.+.. +..+|....++.++|.+|..+|+|++|+.++++++..+ ..+.+ ...++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 35578999999999999998754 22333456788999999999999999999999999864 22333 66788
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-----CCCChhHH
Q 004339 427 YLARTHYEAEQWQDCKKSLLRAIHL-----APSNYTLR 459 (760)
Q Consensus 427 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 459 (760)
+||.+|..+|++++|+.+|++|+.+ .|+++.+.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 9999999999999999999999875 56666443
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.12 E-value=7.4e-06 Score=87.24 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=87.6
Q ss_pred hcHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQ-----HTSNL---YAANGAGVVLAEKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHV 395 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~ 395 (760)
|++++|+.+|++++.+ .|+++ .++.++|.+|..+|+|++|+.++.+++.+.. +..+|.....+++||.+
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence 8999999999999975 34554 4789999999999999999999999998753 44455667789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhh---cCCCc---HHHHHHHHHHHHHh
Q 004339 396 YFAQGNFALAMKMYQNCLRKF---YYNTD---AQILLYLARTHYEA 435 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~---~~~~~---~~~~~~la~~~~~~ 435 (760)
|..+|++++|+.+|++|+..+ ..+++ ..++..|+.+...+
T Consensus 381 ~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 381 QLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 23444 44445566665443
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.89 E-value=0.00011 Score=61.92 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhhcC-C-CcHHHHHHHHHHHHHhcc
Q 004339 363 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL---AMKMYQNCLRKFYY-N-TDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 363 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~-~-~~~~~~~~la~~~~~~g~ 437 (760)
...+...|...+...+ ....+.+++|+++....+... +|.+++..+.. . | ...+.+++||..++++|+
T Consensus 17 l~~~~~~y~~e~~~~~-----~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCC-----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 3445556666666555 568888899999888887666 88888888774 3 2 348899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 438 WQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
|.+|+.++..+|++.|+|..+..-...+
T Consensus 90 Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999998776544444
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.71 E-value=0.00033 Score=60.04 Aligned_cols=105 Identities=15% Similarity=0.081 Sum_probs=92.6
Q ss_pred CCcchHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHcCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDT------VAASVLYRLILFKYQD--------YVDAYLRLAAIAKARNNLQLSIELVNEA 257 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 257 (760)
..|.+++.|..+.......|+. +.-+..|++++..-|. ++..|+..|.. ...++.+.|..+|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 6789999999999999999999 8999999999987763 45667777755 5669999999999999
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 258 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 258 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
+.++...+.+|...|....++|+...|..++.+++.+.|.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 9988888899999999999999999999999999999887
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.60 E-value=0.0012 Score=56.69 Aligned_cols=105 Identities=13% Similarity=0.064 Sum_probs=58.3
Q ss_pred HcCCChHHHHHHHHHHhhcCCH------HHHHHHHHHhhhcCCCCCh-------HHHHHHHHHHHHHHHhhhhcCchHHh
Q 004339 260 VNGKYPNALSMLGDLELKNDDW------VKAKETFRAASDATDGKDS-------YATLSLGNWNYFAALRNEKRAPKLEA 326 (760)
Q Consensus 260 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~-------~~~~~lg~~~y~~~~~~~~~~~~~~~ 326 (760)
+.|++++.|..+.......|+. +.-+..|++++...|+... +.|+..+. +...
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~--~~ei------------ 73 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE--LKAI------------ 73 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH--HHHH------------
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH--HHHh------------
Confidence 4677888887777777777777 7777888888876665211 11111111 1122
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
++.++|...|+.++..+...+.+|...|..-.++|+...|..++.+++...|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 4555555555555555444555555555555555555555555555555544
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.52 E-value=0.00025 Score=62.40 Aligned_cols=51 Identities=8% Similarity=0.008 Sum_probs=41.9
Q ss_pred hcHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 004339 327 THLEKAKELYTRVIVQHTSN---------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 377 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 377 (760)
+.|+.|+-....++....++ ..++..+|.+++..|+|..|...|++++...
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 89999999988877654322 2378889999999999999999999998765
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.52 E-value=0.00072 Score=56.85 Aligned_cols=81 Identities=16% Similarity=0.060 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHc-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHH
Q 004339 194 WNKVTVLFNLARLLEQIHDTVA---ASVLYRLILFKY-Q-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 268 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 268 (760)
+....+.|++|.++....+... ++.+++.++..+ | ..-++++.||..+++.|+|..|+.+++.++...|.+..+.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 3567788888888888877766 888888888776 4 5667888888888999999999999999999989888877
Q ss_pred HHHHHH
Q 004339 269 SMLGDL 274 (760)
Q Consensus 269 ~~la~~ 274 (760)
.....+
T Consensus 112 ~Lk~~i 117 (126)
T 1nzn_A 112 ELERLI 117 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.39 E-value=0.0014 Score=57.76 Aligned_cols=118 Identities=12% Similarity=0.001 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC---C-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-----
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF---V-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----- 418 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----- 418 (760)
++++.-...+...|.|+.|+-....++.+...+.. | ....+++.+|.+++..|+|..|...|++++.....
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45556667778899999999999998877541110 0 12347899999999999999999999999876421
Q ss_pred ------------------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 419 ------------------NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 419 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
+.+.++.+.++.||.++|++.+|+..++..-. .-..+.+...||.+|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 11247889999999999999999999775311 112344555555544
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.24 E-value=0.0034 Score=52.88 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=67.5
Q ss_pred CchHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 384 QMPDVWINLAHVYFAQGNF---ALAMKMYQNCLRKFYYN-TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
-.+.+.+++|++++...+. ..++.+++..+.. .| ...+.++.||..++++|+|..|+.+...++++.|+|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 3588999999999998854 5799999998874 44 3489999999999999999999999999999999998776
Q ss_pred hhHHHH
Q 004339 460 FDAGVA 465 (760)
Q Consensus 460 ~~la~~ 465 (760)
.-...+
T Consensus 116 ~Lk~~I 121 (134)
T 3o48_A 116 ALKSMV 121 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 230
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.22 E-value=0.05 Score=56.17 Aligned_cols=259 Identities=11% Similarity=0.043 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCChH----
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA-----YLRLAAIAKA-RNNLQLSIELVNEALKVNGKYPN---- 266 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~---- 266 (760)
-.+.+.||.+|...|++++-..++.......+..+.+ ...+...+.. -+..+.-+.++..+++-..+.-.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999988888776544433322 2233333322 34455556666666654322212
Q ss_pred --HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC-C----hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHH
Q 004339 267 --ALSMLGDLELKNDDWVKAKETFRAASDATDGK-D----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 339 (760)
Q Consensus 267 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~----~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 339 (760)
+-..+|.+|+..|+|.+|...+.+++...... + ...+..-..+ |... +++.++...|.++
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~-~~~~------------~n~~k~k~~l~~a 165 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKT-YHAL------------SNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH-HHHh------------ccHHHHHHHHHHH
Confidence 23378999999999999999998888743221 1 2233334444 6666 8999999999888
Q ss_pred HhhC---CCCHH----HHHHHHHHHH-HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH-
Q 004339 340 IVQH---TSNLY----AANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ- 410 (760)
Q Consensus 340 l~~~---p~~~~----~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~- 410 (760)
.... +.++. ....-|.++. ..++|..|..+|-.++........|....+...++.|-+..++..+--..+.
T Consensus 166 ~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~ 245 (394)
T 3txn_A 166 RTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSG 245 (394)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHS
T ss_pred HhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcc
Confidence 6542 22332 3445678888 8999999999999998766422111223345556666666665322222221
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 411 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 411 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.....+ ..+....+..+..+ +..+++......+...-..-..++.+.-++..++....
T Consensus 246 ~~~~~~-~~pei~~l~~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir 303 (394)
T 3txn_A 246 KLAITY-SGRDIDAMKSVAEA-SHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML 303 (394)
T ss_dssp HHHHTT-CSHHHHHHHHHHHH-HHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH
T ss_pred cccccc-CCccHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 212222 22334445555554 45566655555544432223345555444555444433
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.16 E-value=0.0094 Score=50.88 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=67.3
Q ss_pred CchHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 384 QMPDVWINLAHVYFAQGNF---ALAMKMYQNCLRKFYYN-TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
..+.+.+++|+++....+. ..++.+++..+.. .| ...+.++.||..++++|+|..|+.+...+|++.|+|..+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 4588999999999998854 5789999998884 44 4589999999999999999999999999999999998766
Q ss_pred hhHHHH
Q 004339 460 FDAGVA 465 (760)
Q Consensus 460 ~~la~~ 465 (760)
.-...+
T Consensus 115 ~Lk~~I 120 (144)
T 1y8m_A 115 ALKSMV 120 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.92 E-value=0.0086 Score=51.10 Aligned_cols=77 Identities=14% Similarity=0.059 Sum_probs=62.3
Q ss_pred CCCchhhhhHHHHHHHcCCH---HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDF---RSALTNFEKVLEIYPD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
+..+.+.|.+|.+++...+. .+++.+++.++...|. .-+.++.||..++++|+|..|+.+.+.+++..|.+..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44677888888888887754 4688888888888884 5678888999999999999999999999999998876654
Q ss_pred H
Q 004339 87 D 87 (760)
Q Consensus 87 ~ 87 (760)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 4
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.88 E-value=0.0065 Score=51.15 Aligned_cols=76 Identities=14% Similarity=0.051 Sum_probs=64.1
Q ss_pred CchhhhhHHHHHHHcCCH---HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDF---RSALTNFEKVLEIYPD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
.+.+.|.+|.++++..+. ..++.+++.+++..|. .-+.++.||..++++|+|..|+.+...++.+.|.+..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 567888999998888754 5789999999998884 478999999999999999999999999999999988765443
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.74 E-value=0.11 Score=53.75 Aligned_cols=103 Identities=10% Similarity=-0.021 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC-Cc----HHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD----AQI 424 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~----~~~ 424 (760)
..+|.+|...|+|.+|..++.+++....... .....+++..-..+|..++++..+...|.++....... .+ +.+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 3689999999999999999999998764211 11235678888999999999999999999998764221 22 556
Q ss_pred HHHHHHHHH-HhccHHHHHHHHHHHHHhCC
Q 004339 425 LLYLARTHY-EAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 425 ~~~la~~~~-~~g~~~~A~~~~~~al~~~p 453 (760)
...-|.++. ..++|..|..+|-.++.-..
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 667888888 89999999999999986544
No 235
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.34 E-value=0.35 Score=42.17 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=28.5
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC
Q 004339 293 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 293 ~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 345 (760)
...|+-..+.....+.+ |+.. |..++...+|..+-..+|.
T Consensus 201 n~iPGiGSY~va~aa~~-yf~l------------g~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 201 EHVPGIGSYFISNAARR-YFNL------------GMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp TSTTTHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSTT
T ss_pred HhCCCchhHHHHHHHHH-HHhc------------ccchhHHHHHHHHHhcCCC
Confidence 34454344444556666 7777 9999999999988888885
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.22 E-value=0.61 Score=53.36 Aligned_cols=243 Identities=15% Similarity=0.072 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC---C---cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh-
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQ---D---YV----DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP- 265 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 265 (760)
..+++.+|.++...+ ..++.++...+.... . .. .+.+.||.++.-.++ +++...+..++..+....
T Consensus 413 ~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~ 489 (963)
T 4ady_A 413 GGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG 489 (963)
T ss_dssp HHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence 345666666666555 357777777765432 0 11 244566666655554 345666666665332111
Q ss_pred -HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChH--HHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 266 -NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY--ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 266 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
.+-+.+|.++...|+-+.....+..+...... ... +-..||.+ .. |+.+.+-.+.+.+...
T Consensus 490 ~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGll---~~------------g~~e~~~~li~~L~~~ 553 (963)
T 4ady_A 490 EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLALI---NY------------GRQELADDLITKMLAS 553 (963)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHH---TT------------TCGGGGHHHHHHHHHC
T ss_pred HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhh---hC------------CChHHHHHHHHHHHhC
Confidence 24456777777777765555555555442211 111 12223322 22 5555555554444332
Q ss_pred CCCCHHH----HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004339 343 HTSNLYA----ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 343 ~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 418 (760)
.++.. ...+|..|...|+...-..++..+.. ++. ++..-.--+|..++..|+.+.+...+... ..
T Consensus 554 --~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-d~~----d~VRraAViaLGlI~~g~~e~v~rlv~~L----~~ 622 (963)
T 4ady_A 554 --DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-DSN----DDVRRAAVIALGFVLLRDYTTVPRIVQLL----SK 622 (963)
T ss_dssp --SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-CSC----HHHHHHHHHHHHHHTSSSCSSHHHHTTTG----GG
T ss_pred --CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-CCc----HHHHHHHHHHHHhhccCCHHHHHHHHHHH----Hh
Confidence 23332 33466667778875444445555553 221 22333333344444456554333333322 23
Q ss_pred CCcHHHHHHHHHHHHHh--cc-HHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHH
Q 004339 419 NTDAQILLYLARTHYEA--EQ-WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 471 (760)
Q Consensus 419 ~~~~~~~~~la~~~~~~--g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 471 (760)
..++.+.+..+.++-.. |. ..+|+..+....+ ++ +..+..+-...+...+.
T Consensus 623 ~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~-d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DP-VDFVRQAAMIALSMILI 676 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CS-SHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CC-CHHHHHHHHHHHHHHhc
Confidence 34555555444444332 22 2567777777653 33 44455555555555554
No 237
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.83 E-value=0.13 Score=44.81 Aligned_cols=117 Identities=12% Similarity=-0.007 Sum_probs=85.6
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
.+++.++-+-.-. .|..+..-..++.++.-.|.|..++-++... +.....+.-+.||...++|..|+
T Consensus 16 ~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l----------NT~Ts~YYk~LCy~klKdYkkA~ 82 (242)
T 3kae_A 16 RDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHKL----------NTCTSKYYESLCYKKKKDYKKAI 82 (242)
T ss_dssp TCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHTC----------CBHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHhc----------chHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544332222 3444456667888999999999988766432 55777888899999999999999
Q ss_pred HHHHHHHh---------------hhcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Q 004339 407 KMYQNCLR---------------KFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 407 ~~~~~al~---------------~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 456 (760)
..++..+. .+-+|.+ .-.+..+|.++.+.|+.++|+.+|.......|-.+
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 99999993 1234455 44566789999999999999999999999887543
No 238
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.097 Score=55.41 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---- 421 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 421 (760)
-..++..+|..|...|++..|..+|.++.....+.. ....+++.+..+++..+++..+..++.++.......++
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 344788899999999999999999999998876432 45789999999999999999999999999887655555
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
..+..+.|.++...++|..|...|-.++......
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~ 241 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI 241 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccCCcc
Confidence 3455577888888999999999999888765444
No 239
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.50 E-value=0.18 Score=57.88 Aligned_cols=104 Identities=9% Similarity=-0.056 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHH
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 426 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 426 (760)
...++.+...|++.|+.++|..+|..+......... -+...|..|...|++.|++++|..+|...... .-.+|..+|.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~-PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-LTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC-CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHH
Confidence 346778888889999999999998775532100000 35788888889999999999999999988876 4567788888
Q ss_pred HHHHHHHHhcc-HHHHHHHHHHHHHhC
Q 004339 427 YLARTHYEAEQ-WQDCKKSLLRAIHLA 452 (760)
Q Consensus 427 ~la~~~~~~g~-~~~A~~~~~~al~~~ 452 (760)
.+-.++.+.|+ .+.|..+|+.+....
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88888888887 467888888887754
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.076 Score=59.63 Aligned_cols=130 Identities=17% Similarity=0.167 Sum_probs=89.1
Q ss_pred CCCchhhhhHHHHHHH--cCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHhc-CCHHHHHHHHHHHHh--------
Q 004339 11 HEFIFPYYGLGQVQLK--LGD-FRSALTNFEKVLEIYPDNCETLKALGHI--YVQL-GQIEKAQELLRKAAK-------- 76 (760)
Q Consensus 11 p~~~~~~~~la~~~~~--~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~-g~~~~A~~~~~~al~-------- 76 (760)
|+.+..|+.-|.+-+- .|. ++.|+.+|++....+|.....+. .+.+ .... .+--+|+.++.++++
T Consensus 243 ~t~v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 243 ATIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp CCSSSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 5555555554443332 344 68899999999999997653332 2222 2222 344567777777663
Q ss_pred cCCCcH----------HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 77 IDPRDA----------QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 145 (760)
Q Consensus 77 ~~p~~~----------~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 145 (760)
+.+.+. ..+..-+..+. .++|+-|+.+.++|+...|.. ...|+.|+.+|..+|+|+.|+-.++.
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse-----F~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDS-----FESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh-----hHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 222222 23333444455 689999999999999999997 89999999999999999999987765
Q ss_pred H
Q 004339 146 A 146 (760)
Q Consensus 146 a 146 (760)
+
T Consensus 397 c 397 (754)
T 4gns_B 397 M 397 (754)
T ss_dssp S
T ss_pred C
Confidence 4
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.088 Score=59.13 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
.+..-+..+...|+|+-|+.+.++++...| .....|+.|+.||+.+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-----seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELAL-----DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCc-----hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455557777789999999999999999999 88999999999999999999999876655
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.31 E-value=1.8 Score=45.85 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-hcCCCc----
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK-FYYNTD---- 421 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~---- 421 (760)
.....|+.+|...|++.+|..++..+..-.-+.. ...-..++.....+|...++|..|..++.++... +..+..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 3456789999999999999999999875432211 0122567888899999999999999999998643 223333
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
..++...|.++...++|.+|..+|..++..
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 567778999999999999999999998865
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.14 E-value=4.9 Score=44.20 Aligned_cols=116 Identities=9% Similarity=-0.022 Sum_probs=78.1
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAAN----GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
.+.+.|...|.......+-+..... .+|.-+...+...++...+..+....+ +.. ....++...+..|++
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-----STS-LIERRVRMALGTGDR 301 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-----CHH-HHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-----ChH-HHHHHHHHHHHCCCH
Confidence 6888999999887654433333222 233333344446677888887654332 222 333344445677999
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 403 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 403 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
..|..+|..+-.. ........|++|+++..+|+..+|..+|.++..
T Consensus 302 ~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999765442 223588899999999999999999999999985
No 244
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.058 Score=57.09 Aligned_cols=129 Identities=13% Similarity=0.091 Sum_probs=65.0
Q ss_pred hcHHHHHHHHHHHH-----------hhCCCCHHHHHHHHHHHHHcCChHHHH----------HHHHHHHHHhc-CCCCCC
Q 004339 327 THLEKAKELYTRVI-----------VQHTSNLYAANGAGVVLAEKGQFDVSK----------DLFTQVQEAAS-GSVFVQ 384 (760)
Q Consensus 327 ~~~~~A~~~~~~al-----------~~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~~p-~~~~~~ 384 (760)
+++++|..+-..++ .+++-...+|+.++.++...|...... ..+..++...- ......
T Consensus 150 k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~ 229 (523)
T 4b4t_S 150 KELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNET 229 (523)
T ss_dssp -----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcch
Confidence 67777777665544 123445667888888888888766532 23333333321 111224
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC--Cc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TD---AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
...++..+-..|+..+.|++|..+..++. ||.+ .+ ...++++|+++.-.++|.+|..+|..|+...|.+..
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 46788889999999999999999999884 3432 22 677889999999999999999999999999987653
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.88 E-value=4.6 Score=42.57 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HcCCChH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------DYVDAYLRLAAIAKARNNLQLSIELVNEALK---VNGKYPN 266 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~ 266 (760)
...+...|+.+|...|++.+|..++..+....- .-...++....+|...+++..|..++.++.. ..+..+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 456778899999999999999999998864321 1256788888999999999999999988743 2333443
Q ss_pred ----HHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 267 ----ALSMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 267 ----~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
.+...|.++...++|.+|-.+|..++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5667888899999999999999888764
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.35 E-value=5.1 Score=45.92 Aligned_cols=184 Identities=16% Similarity=0.126 Sum_probs=101.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHc-CCCh----HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC---C------CChHHHHHH
Q 004339 241 AKARNNLQLSIELVNEALKVN-GKYP----NALSMLGDLELKNDDWVKAKETFRAASDATD---G------KDSYATLSL 306 (760)
Q Consensus 241 ~~~~g~~~~A~~~~~~al~~~-p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~------~~~~~~~~l 306 (760)
....|+.++++..+...+... ..++ .+.+.+|.++...++ .++.++...+.... . ....+.+.|
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345677778888887766422 2222 366777777776664 67887777765432 0 011234455
Q ss_pred HHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCC
Q 004339 307 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ 384 (760)
Q Consensus 307 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 384 (760)
|.+ |... ++ +++...+..++..+... ..+.+.+|.++.-.|+-+....++..+.+... +
T Consensus 462 Gla-~~GS------------~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~-----e 522 (963)
T 4ady_A 462 GLA-AMGS------------AN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQH-----G 522 (963)
T ss_dssp HHH-STTC------------CC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSC-----H
T ss_pred HHH-hcCC------------CC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCc-----H
Confidence 555 4432 22 45666666666543321 13556677777777876666666665554221 2
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHH----HHHHHHHHHHHhccHHHHHHHHHHHH
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ----ILLYLARTHYEAEQWQDCKKSLLRAI 449 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al 449 (760)
...-...+|..++..|+.+.+-.+.+..... .++. +.+.+|.+|...|+...-...+..+.
T Consensus 523 ~vrR~aalgLGll~~g~~e~~~~li~~L~~~----~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 523 NITRGLAVGLALINYGRQELADDLITKMLAS----DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 2222334444555667776666555554432 2332 33456667777788644333555544
No 247
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.30 E-value=2.4 Score=48.81 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=66.4
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHH
Q 004339 205 RLLEQIHDTVAASV-LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 283 (760)
Q Consensus 205 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 283 (760)
......++++.|.. ++.. -|+ ......++..+...|.++.|+...+ ++... ..+.+..|+++.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456788888876 4411 110 1223666777788888888876552 23222 234467788999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHH
Q 004339 284 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 339 (760)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 339 (760)
|.++.+.. .+...|..+|.. +... ++++.|..+|.++
T Consensus 671 A~~~~~~~------~~~~~W~~la~~-al~~------------~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDA-SLQR------------FNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHH-HHHT------------TCHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHH-HHHc------------CCHHHHHHHHHHc
Confidence 88876432 267788889988 8888 9999999998875
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.81 E-value=0.94 Score=52.11 Aligned_cols=109 Identities=13% Similarity=-0.020 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004339 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ----HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 375 (760)
Q Consensus 300 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 375 (760)
..++..+-+. |... |++++|..+|...... ...+...|+.|...|++.|++++|..+|..+..
T Consensus 127 ~~TynaLIdg-lcK~------------G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 127 QQRLLAFFKC-CLLT------------DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhC------------CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4566777777 8888 9999999999775432 345788999999999999999999999999987
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhhcCCCcHHHHH
Q 004339 376 AASGSVFVQMPDVWINLAHVYFAQGNF-ALAMKMYQNCLRKFYYNTDAQILL 426 (760)
Q Consensus 376 ~~p~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~ 426 (760)
..- . -+...|..+..++.+.|+. +.|..+|+.....- -.+|..++.
T Consensus 194 ~G~---~-PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG-~~PD~vtY~ 240 (1134)
T 3spa_A 194 AGL---T-PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG-LKLQALFTA 240 (1134)
T ss_dssp TTC---C-CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT-CCSHHHHHH
T ss_pred cCC---C-CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CCCChhhcc
Confidence 542 1 3588899999999999985 78899999999873 444544444
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.59 E-value=0.29 Score=46.83 Aligned_cols=119 Identities=12% Similarity=0.053 Sum_probs=83.4
Q ss_pred hhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH
Q 004339 326 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405 (760)
Q Consensus 326 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 405 (760)
.|.+..|+......++.+|.+......+..+++-.|+++.|..-++.+.+++| .....-. .|.. .-.|
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p-----~~~~~a~----~yr~---lI~a 77 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-----EYLPGAS----QLRH---LVKA 77 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-----GGHHHHH----HHHH---HHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-----hhhHHHH----HHHH---HHHH
Confidence 39999999999999999999999999999999999999999999999999998 3322211 1110 0111
Q ss_pred HHHHHHHHhh------hcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Q 004339 406 MKMYQNCLRK------FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 406 ~~~~~~al~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 456 (760)
...=..++.- +..|........-+......|+.+.|...-.+|++..|..+
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 1111112211 11122233344455566678999999999999999988654
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.82 Score=40.91 Aligned_cols=97 Identities=9% Similarity=0.112 Sum_probs=69.4
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
|+++.|.++.+.+ ++...|..||......|++.-|..+|.++-... .+..+|...|+.+.-.
T Consensus 19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-------------~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFD-------------KLSFLYLVTGDVNKLS 80 (177)
T ss_dssp TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-------------HHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-------------HHHHHHHHhCCHHHHH
Confidence 9999999887764 678899999999999999999999998874332 4455566677776655
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
.+-+.+... ++. .....+++.+|++++++..|.+.
T Consensus 81 kla~iA~~~----g~~---n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTR----EDF---GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHT----TCH---HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHC----ccH---HHHHHHHHHcCCHHHHHHHHHHC
Confidence 555555442 222 22334567789999999888654
No 251
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.16 E-value=12 Score=41.09 Aligned_cols=358 Identities=9% Similarity=-0.025 Sum_probs=174.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHH-
Q 004339 36 NFEKVLEIYPDNCETLKALGHIY---VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTL- 110 (760)
Q Consensus 36 ~~~~al~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~- 110 (760)
-+...+..+|+.+..-....... .+.+++..-+.+|.. .|.+....+.++.... .|+...|......+...
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 45555677888876655444433 334566655554432 3667776666666655 67766665544443321
Q ss_pred -------------HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhH
Q 004339 111 -------------LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 177 (760)
Q Consensus 111 -------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (760)
.... .......+.......+..|+...|......+ . +... ..... ...+. ...
T Consensus 133 ~~~p~~c~~l~~~~~~~-g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l-~--~~~~--------~~a~~-~~al~-~~p 198 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRAS-GKQDPLAYLERIRLAMKAGNTGLVTVLAGQM-P--ADYQ--------TIASA-IISLA-NNP 198 (618)
T ss_dssp SCCCTHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC-C--GGGH--------HHHHH-HHHHH-HCG
T ss_pred CCCcHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC-C--HHHH--------HHHHH-HHHHH-hCh
Confidence 1111 1112333333445555566666665544322 0 0000 00000 00000 000
Q ss_pred HhhhhhhccCCCccCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHH----HHHHHHHHHcCCHHHHHH
Q 004339 178 QLFHRFENDGNHVELPWNK-VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY----LRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 178 ~~~~~l~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----~~la~~~~~~g~~~~A~~ 252 (760)
.....+.. . ..+.. ....+.++.......+.+.|...|.......+...... ..++.-+...+...++..
T Consensus 199 ~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~ 273 (618)
T 1qsa_A 199 NTVLTFAR---T--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAK 273 (618)
T ss_dssp GGHHHHHH---H--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHH
T ss_pred HhHHHHHh---c--cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 00000000 0 01111 11233344444455688899999888765443333222 223333333443556777
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHH
Q 004339 253 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 332 (760)
Q Consensus 253 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 332 (760)
.+.......+ +....-.++...+..|++..|..+|..+...... .....+-+|.+ +... |+..+|
T Consensus 274 ~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra-~~~~------------g~~~~a 338 (618)
T 1qsa_A 274 WRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADL-LLER------------GREAEA 338 (618)
T ss_dssp HHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHH-HHHT------------TCHHHH
T ss_pred HHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHH-HHHc------------CCHHHH
Confidence 7777654333 3333333444456779999999999876653222 55666667777 6666 999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
..+|..+.. +.+.+. .++. ..+|..-. ... ....+.....-.....+..+..++..|....|...+..+
T Consensus 339 ~~~~~~~a~--~~~fYg--~lAa--~~Lg~~~~-~~~----~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~ 407 (618)
T 1qsa_A 339 KEILHQLMQ--QRGFYP--MVAA--QRIGEEYE-LKI----DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (618)
T ss_dssp HHHHHHHHT--SCSHHH--HHHH--HHTTCCCC-CCC----CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCChHH--HHHH--HHcCCCCC-CCC----CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHH
Confidence 999999875 333322 1211 12232100 000 000000000000012245566777788888888777777
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHH
Q 004339 413 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 446 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 446 (760)
+... .+. -...++.+....|.+..++....
T Consensus 408 ~~~~-~~~---~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 408 VKSK-SKT---EQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HTTC-CHH---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcC-CHH---HHHHHHHHHHHCCChHHHHHHHH
Confidence 7653 432 23355666667777776665443
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.97 E-value=3.6 Score=39.38 Aligned_cols=57 Identities=30% Similarity=0.321 Sum_probs=33.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 58 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
+++.|.++.|+..+...++.+|.+......+..++. .|+++.|...++.+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 344556666666666666666666666555555555 556666666666666665553
No 253
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.80 E-value=0.44 Score=50.89 Aligned_cols=77 Identities=19% Similarity=0.149 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004339 50 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 128 (760)
Q Consensus 50 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 128 (760)
.+..||.+......+..|..+|.+|+.+.|.+..++..||.+.. .|+.-.|+-+|.+++...... +.+..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf-----~~a~~nL~~ 228 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF-----PAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC-----HHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCC-----hhHHHHHHH
Confidence 45555555555555555666666666666665555655655555 455555555555555433222 445555554
Q ss_pred HHH
Q 004339 129 IHF 131 (760)
Q Consensus 129 ~~~ 131 (760)
++.
T Consensus 229 ~f~ 231 (497)
T 1ya0_A 229 ALS 231 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 254
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.67 E-value=1.2 Score=51.30 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004339 46 DNCETLKALGHIYVQLGQIEKAQELLRKA 74 (760)
Q Consensus 46 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 74 (760)
++...|..+|..+...|+++.|..+|.++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34555555555555555555555555554
No 255
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.58 E-value=5 Score=35.83 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=20.6
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 209 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 256 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 256 (760)
..|+++.|..+...+ ++...|..||......|++.-|..+|.+
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 445555555444332 3344455555555555555555444443
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.45 E-value=1.5 Score=52.82 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=88.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------------
Q 004339 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------------------- 77 (760)
Q Consensus 19 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------------- 77 (760)
.+...++..+.++-|.. .+...|.++...+.+|.+++..|++++|..+|.++..-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 45566777787766654 44567888888899999999999999999999887321
Q ss_pred --CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 78 --DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 146 (760)
Q Consensus 78 --~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 146 (760)
....+..|..+..++. .+.++.++.....|+...+..........|..+-..+...|+|++|...+...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 0112345566666666 67888889888888876543321112346778888888899999988777543
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.25 E-value=3.3 Score=42.81 Aligned_cols=60 Identities=7% Similarity=-0.105 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 258 (760)
+...++..+...|++..|+..+..++..+|.+-.++..+..++...|+..+|+..|..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555566666666666666666666666666666666666666666666666665543
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.72 E-value=2.2 Score=44.18 Aligned_cols=92 Identities=13% Similarity=-0.048 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCC--------c--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 202 NLARLLEQIHDTVAASVLYRLILFKYQD--------Y--------------VDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~~l~~~p~--------~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
..|......|+...|...+..++.+... . ..+...++..+...|++.+|+..+..++.
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344445678999999999999876421 1 12344566778899999999999999999
Q ss_pred HcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 004339 260 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 260 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (760)
.+|-+..++..+..+|...|+..+|+..|..+..
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987654
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.45 E-value=0.98 Score=47.61 Aligned_cols=102 Identities=16% Similarity=0.047 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC--CChH----
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ---DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG--KYPN---- 266 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~---- 266 (760)
...++..+|..|...|+++.|.+.|.++..... .-.+.++.+..++...+++..+..++.++..... .++.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 345788999999999999999999999887543 4567889999999999999999999999876632 2333
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 267 ALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
.....|.+++..++|..|..+|-.++.....
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 4456688889999999999999888776544
No 260
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.39 E-value=1.1 Score=47.74 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 276 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 276 (760)
.+..||.+......+..|..+|.+++.+.|.+...+..||.+....|+.-.|+-+|-+++......+.+..++..++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 556678888888888888888888888888888888888888888888888888888888766666777777766654
No 261
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.21 E-value=2 Score=45.53 Aligned_cols=141 Identities=11% Similarity=0.017 Sum_probs=57.4
Q ss_pred cCCHhHHHHHHHHHH--HHHH----hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 94 SSDTGAALDAFKTAR--TLLK----KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 94 ~~~~~~A~~~~~~al--~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
.+++++|..+-...+ .... ..-+...+.+|+.++.+|...|+.............+.|.
T Consensus 149 ~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~--------------- 213 (523)
T 4b4t_S 149 SKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRST--------------- 213 (523)
T ss_dssp ------------------------------------------------------CHHHHHHHHTH---------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHH---------------
Confidence 458888887776554 1211 1112334667777777777777766543332222211000
Q ss_pred hhHHHHHHhHHhhhhhhccCCCcc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-------HHHHHHHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVE-LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-------VDAYLRLAA 239 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~ 239 (760)
+..++.. ..+. .......++..+-+.|...+.|+.|..+..++. .|.. ...++.+|.
T Consensus 214 -----------Ll~~~rt--a~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GR 278 (523)
T 4b4t_S 214 -----------MMKFLKI--ASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSK 278 (523)
T ss_dssp -----------HHHHHHH--CCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHH--HhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHH
Confidence 0000000 0011 222456677888999999999999999999885 4422 345667888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCC
Q 004339 240 IAKARNNLQLSIELVNEALKVNGKY 264 (760)
Q Consensus 240 ~~~~~g~~~~A~~~~~~al~~~p~~ 264 (760)
++.-.++|.+|..++..++...|.+
T Consensus 279 I~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 279 INAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHhccHHHHHHHHHHHHHhCCcc
Confidence 8889999999999988888877654
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.99 E-value=5.6 Score=47.74 Aligned_cols=170 Identities=11% Similarity=-0.034 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChH--HHHHHHHHHHHH
Q 004339 236 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY--ATLSLGNWNYFA 313 (760)
Q Consensus 236 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~lg~~~y~~ 313 (760)
.+...+...+.++-+.. .+...|.++...+.+|.+++..|++++|..+|.++.......... ....+..+
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~---- 888 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI---- 888 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHH----
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccc----
Confidence 34455666677665543 445678888888999999999999999999998875432111100 00000000
Q ss_pred HHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 004339 314 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 393 (760)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la 393 (760)
..........+..|..+..++...|.++.++.....|++..+..........|.++-
T Consensus 889 -----------------------~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iF 945 (1139)
T 4fhn_B 889 -----------------------AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETL 945 (1139)
T ss_dssp -----------------------HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred -----------------------cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 000011112334556666777788888888888888887764211000123677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHH
Q 004339 394 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ 439 (760)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 439 (760)
..+...|+|++|...+-..-. .......+..|-..++..|...
T Consensus 946 k~~L~l~~ye~Ay~aL~~~pd---~~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 946 KTACAAGKFDAAHVALMVLST---TPLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHCCSGGGGHHHHHHHH---SSSCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHhhCCHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhCCChh
Confidence 888888888888776643322 1222455555555555554443
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.50 E-value=21 Score=35.49 Aligned_cols=143 Identities=12% Similarity=0.021 Sum_probs=75.4
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHH
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 272 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 272 (760)
.-.++..+..+|..|...+++.+|..+|- +. ..+.+..+..+-.-+...+ .|.....+...+
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg-~~~s~~~~a~mL~ew~~~~---------------~~~e~dlfiaRa 193 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLV--LG-TKESPEVLARMEYEWYKQD---------------ESHTAPLYCARA 193 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS-CTTHHHHHHHHHHHHHHTS---------------CGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHH--hc-CCchHHHHHHHHHHHHHhc---------------CCccHHHHHHHH
Confidence 34678899999999999999999988873 21 1112233322222222222 123333333333
Q ss_pred -HHHhhcCCHHHHHHHHHHhhh----cCCCC---------------ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHH
Q 004339 273 -DLELKNDDWVKAKETFRAASD----ATDGK---------------DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 332 (760)
Q Consensus 273 -~~~~~~g~~~~A~~~~~~al~----~~~~~---------------~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 332 (760)
..|+..++...|...+...+. ..|.- ....+++...+ ++..+. +... ..|..-
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~l-Lllt~q--~~~~----~lF~~L 266 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISM-LLLSVQ--KGSP----DLFRQL 266 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHH-HHHHHH--SCCH----HHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHH-HHHHHh--cCCH----HHHHHH
Confidence 335677788877775544332 11210 01222233332 222211 1110 245556
Q ss_pred HHHHHHHHhhCC-CCHHHHHHHHHHHHHc
Q 004339 333 KELYTRVIVQHT-SNLYAANGAGVVLAEK 360 (760)
Q Consensus 333 ~~~~~~al~~~p-~~~~~~~~la~~~~~~ 360 (760)
...|...+..+| .....+..+|.+|+..
T Consensus 267 ~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 267 KSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 666777777777 6777778888888744
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.24 E-value=32 Score=34.22 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=24.8
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004339 262 GKYPNALSMLGDLELKNDDWVKAKETFR 289 (760)
Q Consensus 262 p~~~~~~~~la~~~~~~g~~~~A~~~~~ 289 (760)
-.++.++..+|..|...+++.+|..+|-
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3678899999999999999999999983
No 265
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=83.03 E-value=0.00016 Score=74.55 Aligned_cols=372 Identities=12% Similarity=0.070 Sum_probs=206.8
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
-+.+.+|..+|.+++..+...+|+..|-++ +++..+.....+..+.|.++.=+.++..+-+.-. .+..-..|..
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~ 124 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIF 124 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHH
Confidence 345778999999999999999999888654 4444566667777788999988888877765421 2222222333
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhh
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 169 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 169 (760)
+|. .++..+-.+.+ . .|+ ..-....|.-++..|.|+.|.-+|..+-.... +.......
T Consensus 125 ayAk~~rL~elEefl----~-~~N------~A~iq~VGDrcf~e~lYeAAKilys~isN~ak---LAstLV~L------- 183 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI----N-GPN------NAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR---LASTLVHL------- 183 (624)
T ss_dssp HHHTSCSSSTTTSTT----S-CCS------SSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT---TSSSSSSC-------
T ss_pred HHHhhCcHHHHHHHH----c-CCC------cccHHHHHHHHHHccCHHHHHHHHHhCccHHH---HHHHHHHH-------
Confidence 333 22211100000 0 011 12235678888888888888777755433110 00000000
Q ss_pred HHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Q 004339 170 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 249 (760)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 249 (760)
..+..++... ...+++.+|-....++...+.+.-|..+--.++- +|+.. -.+...|...|.+++
T Consensus 184 -------~~yq~AVdaA-----rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL---~elv~~YE~~G~f~E 247 (624)
T 3lvg_A 184 -------GEYQAAVDGA-----RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADEL---EELINYYQDRGYFEE 247 (624)
T ss_dssp -------SGGGSSTTTT-----TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCC---SGGGSSSSTTCCCTT
T ss_pred -------HHHHHHHHHH-----HhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHH---HHHHHHHHhCCCHHH
Confidence 0111111111 2234566788888888888988888766655553 44432 345566788999999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC--CCC-----ChHHHHHHHHHHHHHHHhhhhcCc
Q 004339 250 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT--DGK-----DSYATLSLGNWNYFAALRNEKRAP 322 (760)
Q Consensus 250 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-----~~~~~~~lg~~~y~~~~~~~~~~~ 322 (760)
-+.+++.++.+..-+...+..||.+|.+- .+++-.++++...... |.. ....|..+..+ |..-
T Consensus 248 LIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfL-Y~~y-------- 317 (624)
T 3lvg_A 248 LITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL-YDKY-------- 317 (624)
T ss_dssp STTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHH-HHHH--------
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHH-Hhcc--------
Confidence 99999999988888899999999888765 4666666665433321 110 22334455555 5544
Q ss_pred hHHhhcHHHHHHHH-------------HHHHhhCCCCHHHHH---------------HHHHHHHHcCChHHHHHHHHHHH
Q 004339 323 KLEATHLEKAKELY-------------TRVIVQHTSNLYAAN---------------GAGVVLAEKGQFDVSKDLFTQVQ 374 (760)
Q Consensus 323 ~~~~~~~~~A~~~~-------------~~al~~~p~~~~~~~---------------~la~~~~~~g~~~~A~~~~~~al 374 (760)
..++.|.... ..++..- .|..+++ .|-.++.-.=+....+.+|.+.-
T Consensus 318 ----dE~DnA~ltMi~h~~~Aw~h~~Fkdii~KV-aN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~ 392 (624)
T 3lvg_A 318 ----EEYDNAIITMMNHPTDAWKEGQFKDIITKV-ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 392 (624)
T ss_dssp ----TCHHHHHHTTTSCHHHHCCGGGGTTTGGGC-SCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTT
T ss_pred ----hhHHHHHHHHHhCChhhccHHHHHHHHHHc-chHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcC
Confidence 5555443211 1111111 1222222 22222333334455555555432
Q ss_pred HHh---c---CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC------------CCcHHHHHHHHHHHHHhc
Q 004339 375 EAA---S---GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY------------NTDAQILLYLARTHYEAE 436 (760)
Q Consensus 375 ~~~---p---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~la~~~~~~g 436 (760)
.+. | .....++..+.-.+-.+|+...+|+. ++..+..+.+ ..-.+....-+.+|.+.+
T Consensus 393 ~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~----LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~ 468 (624)
T 3lvg_A 393 QLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA----LRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNN 468 (624)
T ss_dssp CGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH----HHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTC
T ss_pred CchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH----HHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcc
Confidence 211 1 00112456667777788888888753 3334433211 122445555677777788
Q ss_pred cHHHHHHH
Q 004339 437 QWQDCKKS 444 (760)
Q Consensus 437 ~~~~A~~~ 444 (760)
+|.+|+..
T Consensus 469 rw~qsi~l 476 (624)
T 3lvg_A 469 RWKQSVEL 476 (624)
T ss_dssp HHHHHSSC
T ss_pred cHHHHHHH
Confidence 88887765
No 266
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=82.92 E-value=6.4e-05 Score=77.48 Aligned_cols=264 Identities=13% Similarity=0.109 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004339 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125 (760)
Q Consensus 47 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 125 (760)
.+.+|..+|.+++..+...+|+..|-++ -+|. .+.....+.. .|.|+.-+.++.-+-+.... +.+=..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke------~~IDte 121 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKKARE------SYVETE 121 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS------TTTTHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc------cccHHH
Confidence 4667788888888888777777776543 2333 2333333333 45666666555544433211 223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~ 205 (760)
|..+|.+.++..+-.. .+ ..|+. .-....|.
T Consensus 122 Li~ayAk~~rL~elEe-----------------------------------------------fl-~~~N~-A~iq~VGD 152 (624)
T 3lvg_A 122 LIFALAKTNRLAELEE-----------------------------------------------FI-NGPNN-AHIQQVGD 152 (624)
T ss_dssp HHHHHHTSCSSSTTTS-----------------------------------------------TT-SCCSS-SCTHHHHH
T ss_pred HHHHHHhhCcHHHHHH-----------------------------------------------HH-cCCCc-ccHHHHHH
Confidence 4455555554322111 11 12222 22345677
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
-++..|.|+.|.-+|..+ .-|..|+.++..+|+|..|+...+++ +++.+|-.....+...+++.-|.
T Consensus 153 rcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp HHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHH
Confidence 888888888887666532 22557788888888888887765543 56677888888888888888777
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 004339 286 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365 (760)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 365 (760)
.+--.++-.... - -.+... |-.. |.|++-+.+++.++.+...+...+..||.+|.+- +.++
T Consensus 220 icGLniIvhade-L----~elv~~-YE~~------------G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 220 MCGLHIVVHADE-L----EELINY-YQDR------------GYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHHHHHHCCSSC-C----SGGGSS-SSTT------------CCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTH
T ss_pred HhcchhcccHHH-H----HHHHHH-HHhC------------CCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHH
Confidence 766555543221 1 012222 4444 8889999999999988888888888899888754 3444
Q ss_pred HHHHHHH---------HHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 366 SKDLFTQ---------VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 366 A~~~~~~---------al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
-.+.++. ++... .....|-.+..+|..-.+|+.|+..
T Consensus 281 lmEHlklf~sriNipKvirac------E~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAA------EQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHH------TTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHH------HHHhhHHHHHHHHhcchhHHHHHHH
Confidence 4444432 22222 3456788888899999999877643
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.78 E-value=42 Score=33.04 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=11.0
Q ss_pred hcHHHHHHHHHHHHh
Q 004339 327 THLEKAKELYTRVIV 341 (760)
Q Consensus 327 ~~~~~A~~~~~~al~ 341 (760)
++...|..+|.....
T Consensus 202 ~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 202 SNISFAHESKDIFLE 216 (312)
T ss_dssp TBHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 888888888776543
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.84 E-value=6.9 Score=45.82 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=44.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 75 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 75 (760)
..+...+...|.++-|. ..+...|.++..-+.+|.+|+..|++++|..+|++|-
T Consensus 814 ~~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34667778888887554 3557778888888999999999999999999999875
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.39 E-value=45 Score=30.27 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 416 (760)
....+|..++..+ ..+....+..+|.-+....-|. ..+..|...|..+...|++.+|..+|+..+...
T Consensus 78 RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~---~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 78 RFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGT---KLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSST---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444566555544 2344668888888877765443 567888888888888999999999999888864
No 270
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=65.80 E-value=59 Score=27.45 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=41.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 394 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
.++..+|.-++--+.+...+. ..+.++.+++.+|.+|.+.|+..+|.+.+.+|.+..
T Consensus 99 d~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 345667777766666665444 355668888888888888888888888888887654
No 271
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=59.81 E-value=1.4e+02 Score=29.38 Aligned_cols=126 Identities=16% Similarity=0.102 Sum_probs=83.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC---C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCcHHHHHH
Q 004339 19 GLGQVQLKLGDFRSALTNFEKVLEIY---P---DNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAFID 87 (760)
Q Consensus 19 ~la~~~~~~g~~~~A~~~~~~al~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 87 (760)
..-...+..|+|=+|.+.++.+.... . ...+.++.-+..+.+.|++..|..+..-.+.. .|-+......
T Consensus 18 ~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 18 QRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34445577788888888887765432 1 12456677777888888888887765554433 2334555566
Q ss_pred HHHHHcc-C-CHhHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 88 LGELLIS-S-DTGAALDAFKTARTLLKKAGE--EVPIEVLNNIGVIHFEKGEFESAHQSFK 144 (760)
Q Consensus 88 la~~~~~-~-~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~ 144 (760)
+..++.. . .-..=.....+++.-....+. ...+.++..+|..|+..|++.+|..+|-
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 6666652 2 222234566666666554432 2368999999999999999999999885
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.65 E-value=25 Score=30.83 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 366 A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
+..+|.-+....-+. ..+..|...|.++...|++.+|..+|...+..
T Consensus 79 p~~if~~L~~~~IG~---~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGV---SLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHTTSST---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcch---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555565555443222 45666666677777777777777777777664
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.52 E-value=40 Score=39.31 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCChh
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLA-PSNYT 457 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 457 (760)
...|.++..++...+-++-++...+.|+... ++++.
T Consensus 897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 4567778888888888888888888888654 44444
No 274
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=57.29 E-value=24 Score=26.08 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=15.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 004339 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDN 47 (760)
Q Consensus 19 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 47 (760)
.+|..++..|++++|+.+|-+|+...|.-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 34555555555555555555555555443
No 275
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=55.61 E-value=12 Score=39.09 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCC
Q 004339 391 NLAHVYFAQGNFALAMKMYQNCLRKFY--------YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL-APSN 455 (760)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 455 (760)
++-.+|++.++..-+..++...-.... ...-+..+|++|+++...++|.+|...+..|+.. .|.+
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 445667777777766666654433211 1111667778888888888888888888888877 6654
No 276
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=54.45 E-value=1.4e+02 Score=29.61 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=52.8
Q ss_pred HHHHHHHHHcC---ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---hcCCCcHHH
Q 004339 351 NGAGVVLAEKG---QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK---FYYNTDAQI 424 (760)
Q Consensus 351 ~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~ 424 (760)
..|-++++..| +|..|+-.+-..-++.|....|. ++.+|.+++.. +..+....-
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~--------------------~l~L~~~AI~sa~~yY~n~HvYP 298 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPP--------------------AEELFKEAITVAKREYSDHHIYP 298 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCC--------------------HHHHHHHHHHHHHHHSTTCCSHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCC--------------------HHHHHHHHHHHHHHHhccCCccc
Confidence 44566666555 56677777777777776432221 44444444432 234556777
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 425 LLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 425 ~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
|.++|-++++.+++.+|+..|-.|-..
T Consensus 299 YtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 299 YTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 888888999999999999998877654
No 277
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=52.83 E-value=1.7e+02 Score=32.10 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=24.1
Q ss_pred HHHHHHHHHHH--HHhccHHHHHHHHHHHHHhCCCC
Q 004339 422 AQILLYLARTH--YEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 422 ~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
...+..+..++ +..|++..|+..+++ +.+-|-+
T Consensus 536 ~~lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 536 CMLLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 34455566555 889999999999988 6677865
No 278
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=51.73 E-value=1.5e+02 Score=29.97 Aligned_cols=81 Identities=11% Similarity=0.226 Sum_probs=55.7
Q ss_pred HHHHHHHHHcC---ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---hcCCCcHHH
Q 004339 351 NGAGVVLAEKG---QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK---FYYNTDAQI 424 (760)
Q Consensus 351 ~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~ 424 (760)
..|-++++..| +|..|+-.+-..-++.|....|. ++.+|.+++.. +..+.+..-
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~--------------------~~~L~~~AI~sa~~~Y~n~HvYP 320 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPD--------------------PLTLYHKGIASAKTYYRDEHIYP 320 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCC--------------------HHHHHHHHHHHHHHHSTTCCSHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCCC--------------------HHHHHHHHHHHHHHHhccCCccc
Confidence 45666666555 67778877777777777432221 44444444432 345566788
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 425 LLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 425 ~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
|.++|-+|++.+++.+|+..|-.|-..
T Consensus 321 YtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 321 YMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeecchhhhhcchHHHHHHHHHHHHHH
Confidence 889999999999999999999887654
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.63 E-value=33 Score=31.68 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004339 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419 (760)
Q Consensus 364 ~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 419 (760)
+.+..+|.-+....-|. ..+..|...|.++...|+|.+|..+|+..+.....|
T Consensus 131 ~~p~~if~~L~~~~IG~---~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQ---ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCST---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 46667777776654332 567788888888888888888888888888864333
No 280
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=50.13 E-value=16 Score=33.46 Aligned_cols=31 Identities=6% Similarity=-0.007 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004339 387 DVWINLAHVYFAQGNFALAMKMYQNCLRKFY 417 (760)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 417 (760)
...+.+|.+++..++|.+|...|..|+..++
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~ 45 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCH 45 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCC
Confidence 3455566666666666666666666666543
No 281
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=49.52 E-value=1.2e+02 Score=25.66 Aligned_cols=54 Identities=17% Similarity=0.051 Sum_probs=36.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
++..+|.-++--+.+..++...+-.+..++.+|.+|.+.|+..+|-+++.++-+
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 445566767666666666655666677777777777777777777777776654
No 282
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=49.00 E-value=1.8e+02 Score=27.56 Aligned_cols=44 Identities=14% Similarity=-0.014 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--C-CcHHHHHHHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKY--Q-DYVDAYLRLAAIA 241 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p-~~~~~~~~la~~~ 241 (760)
.-+..++.+..+.++|++.+.+..++...+ + -...-...|..+|
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaY 55 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAY 55 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 445566777777777777777777777655 3 2333444444443
No 283
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=48.14 E-value=1.9e+02 Score=27.46 Aligned_cols=44 Identities=14% Similarity=-0.004 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---C-CcHHHHHHHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKY---Q-DYVDAYLRLAAIA 241 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p-~~~~~~~~la~~~ 241 (760)
.-+..++.+..+.++|++.+.+..++...+ + -...-...|+.+|
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAy 76 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAY 76 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Confidence 445567777777777877777777777754 3 3344445555544
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.77 E-value=68 Score=27.92 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=38.4
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHH-H--HHHHHhcCCHHHHHHHHHHHHh
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKA-L--GHIYVQLGQIEKAQELLRKAAK 76 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~-l--a~~~~~~g~~~~A~~~~~~al~ 76 (760)
-+..|..++..|+|-+|-.+|+.+-...+.. ...+.. + |....+.|+..-|..++.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4667777888888888888888887765543 122222 2 2233445777777777777765
No 285
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=46.38 E-value=1.9e+02 Score=27.12 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQ 228 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p 228 (760)
+..+|.+..+.++|++.+.+...+...++
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~ 35 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNE 35 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34445555555555555555555554443
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.36 E-value=1.5e+02 Score=25.88 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 386 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
..+|+.++... ..+..+|.-+...--....+..|...|..+...|++.+|..+|...+...
T Consensus 66 LklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 66 LNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34555555542 34777888887764445569999999999999999999999999999876
No 287
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=44.69 E-value=2.1e+02 Score=27.07 Aligned_cols=31 Identities=16% Similarity=-0.078 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQ 228 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 228 (760)
.-+..+|.+..+.++|++.+.+..++...++
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~ 62 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDV 62 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 3445556666666666666666666665544
No 288
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.80 E-value=37 Score=25.76 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=11.0
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 004339 397 FAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 397 ~~~g~~~~A~~~~~~al~ 414 (760)
-..|+|.+|+.+|..++.
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 345666666666665554
No 289
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=43.50 E-value=2.1e+02 Score=26.67 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHc
Q 004339 49 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELLI 93 (760)
Q Consensus 49 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 93 (760)
+-+..++.+..+.++|++.+.+.++++..+|. +..-...+..+|.
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayK 51 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYK 51 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 44556677777777777777777777776654 3444444554443
No 290
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.10 E-value=2.9e+02 Score=28.02 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=64.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHh----cC---C-----CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc
Q 004339 354 GVVLAEKGQFDVSKDLFTQVQEAA----SG---S-----VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~al~~~----p~---~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 421 (760)
..+.....+..+|+.++..+.... .. . .......+...++..|...|+...|..+++++-.......+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344556778889988887763321 10 0 00122456677899999999999999999988765422211
Q ss_pred ------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 422 ------AQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 422 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
..++...+..|...+++..+...+-.++..
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 445556677777788888877777766653
No 291
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=40.42 E-value=33 Score=26.78 Aligned_cols=29 Identities=17% Similarity=0.426 Sum_probs=19.1
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPD 46 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 46 (760)
..+|..++..|+++.|+.+|-+|+...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34666677777777777767666666554
No 292
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=39.53 E-value=44 Score=30.55 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=43.5
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
+..+|.+|.+++..++|.+|...|..|+...|.... ++..+.-+-+-+|++.. ...+++ .+. ..+..+
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~~L 86 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFAEV 86 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHHHH
Confidence 345677888888888888888888888887776532 23333333344565432 222221 111 135556
Q ss_pred HHHHccCCH
Q 004339 89 GELLISSDT 97 (760)
Q Consensus 89 a~~~~~~~~ 97 (760)
..++..|+.
T Consensus 87 ~~Avr~Gdl 95 (203)
T 3t5x_A 87 TRAVSEGNL 95 (203)
T ss_dssp HHHHHHTCH
T ss_pred HHHHHhCCH
Confidence 666666654
No 293
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=39.16 E-value=3.4e+02 Score=28.00 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDA 146 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~a 146 (760)
..++..||..+...|+...|.-||--+
T Consensus 278 ~~~l~~LGd~L~~~g~~~aAhiCYL~a 304 (441)
T 3mzk_B 278 LEFLIEFGIFLTKKGLTAAASTLFIIG 304 (441)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcchhHHhHhcc
Confidence 468899999999999999999988655
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.54 E-value=2.1e+02 Score=26.38 Aligned_cols=80 Identities=5% Similarity=0.107 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCC-CCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHH
Q 004339 367 KDLFTQVQEAASGS-VFVQM---PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 367 ~~~~~~al~~~p~~-~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 442 (760)
..++.+++...... .+.++ ..+|+.++.. .+.+..+|.-+...--....+..|...|..+...|++.+|.
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 170 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKAD 170 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 45666666654321 11122 3345555442 35777888888876445556899999999999999999999
Q ss_pred HHHHHHHHhC
Q 004339 443 KSLLRAIHLA 452 (760)
Q Consensus 443 ~~~~~al~~~ 452 (760)
.+|...+...
T Consensus 171 ~Vy~~Gi~~~ 180 (223)
T 4aez_C 171 EVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcC
Confidence 9999999875
No 295
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=38.06 E-value=78 Score=23.32 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 52 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 52 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
..+|..+...|++++|+.+|-+|+.+.|.-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 46888899999999999999999999886443
No 296
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=38.00 E-value=84 Score=32.79 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=63.8
Q ss_pred HhHHHHHHHHHHHHHHhcCCC----C----C---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhh
Q 004339 97 TGAALDAFKTARTLLKKAGEE----V----P---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 165 (760)
Q Consensus 97 ~~~A~~~~~~al~~~~~~~~~----~----~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 165 (760)
.+.+...+.+++...-.+..+ . . ..+.+.+-.+|++.++...|..++..+-...+
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~-------------- 207 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSM-------------- 207 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCC--------------
Confidence 566667777777663322110 0 1 12335566889999999999988865533110
Q ss_pred hhhhHHHHHHhHHhhhhhhccCCCccCCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cCCc
Q 004339 166 DASASMLQFKDMQLFHRFENDGNHVELPW--NKVTVLFNLARLLEQIHDTVAASVLYRLILFK-YQDY 230 (760)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~ 230 (760)
...+...| ..+..+|.+|+++...++|.+|...+..++.. .|..
T Consensus 208 ---------------------~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 208 ---------------------LAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp ---------------------CSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ---------------------CcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 00011122 34567889999999999999999999999988 6644
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=37.78 E-value=2.3e+02 Score=25.60 Aligned_cols=84 Identities=10% Similarity=0.073 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCC-CCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHH
Q 004339 368 DLFTQVQEAASGS-VFVQM---PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 443 (760)
Q Consensus 368 ~~~~~al~~~p~~-~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 443 (760)
.++++++...... .+.++ ..+|..++..+ ..++...+..+|.-+...--....+..|...|..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5778887765321 12223 34666666654 2345779999999988875455669999999999999999999999
Q ss_pred HHHHHHHhC
Q 004339 444 SLLRAIHLA 452 (760)
Q Consensus 444 ~~~~al~~~ 452 (760)
+|...++..
T Consensus 137 Vy~~GI~~~ 145 (202)
T 3esl_A 137 LLELGAENN 145 (202)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999999875
No 298
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=37.75 E-value=91 Score=23.70 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 386 PDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
+.....-|.-++..++|.+|..+|+++...
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 444455566677777788888887777765
No 299
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=37.74 E-value=53 Score=24.94 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=8.1
Q ss_pred HHhccHHHHHHHHHHHH
Q 004339 433 YEAEQWQDCKKSLLRAI 449 (760)
Q Consensus 433 ~~~g~~~~A~~~~~~al 449 (760)
-..|++.+|+.+|..++
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 44455555544444444
No 300
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=36.70 E-value=55 Score=24.80 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=12.0
Q ss_pred HHhccHHHHHHHHHHHHH
Q 004339 433 YEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 433 ~~~g~~~~A~~~~~~al~ 450 (760)
-+.|+|.+|+.+|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 566777777776666654
No 301
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=36.10 E-value=99 Score=30.64 Aligned_cols=68 Identities=25% Similarity=0.225 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHc---cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 81 DAQAFIDLGELLI---SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 81 ~~~~~~~la~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
.|.++-+||.+-. ......++.+|.+++......-...+...|..+|-.|++.+++.+|+..+-.+-.
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 4555555555533 1233447888888888777655555677888899999999999999999988754
No 302
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.12 E-value=1.6e+02 Score=25.51 Aligned_cols=64 Identities=8% Similarity=0.106 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc------HHHH-HHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 388 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD------AQIL-LYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~-~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
--+..|..++..|+|=+|-+.++.+-...+.+.+ .-+. ...|..++..|+..-|...+.+++..
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456677788889999999999998886433311 2223 33444566689999999999999874
No 303
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=34.80 E-value=16 Score=25.97 Aligned_cols=17 Identities=53% Similarity=0.710 Sum_probs=12.6
Q ss_pred cCCCCCCCCCCCCCCch
Q 004339 693 AGLEDSDVDDEMAPSIT 709 (760)
Q Consensus 693 ~~~~~~~~~~~~~~~~~ 709 (760)
-|+.|||+|++..|+..
T Consensus 3 YGL~DSDEEEe~~P~d~ 19 (64)
T 1ko6_B 3 YGLQDSDEEEEEHPSKT 19 (64)
T ss_pred cCccccchhhhcCCCcc
Confidence 47889999887667753
No 304
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=34.19 E-value=2.9e+02 Score=25.67 Aligned_cols=43 Identities=16% Similarity=-0.038 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-cHHHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQD-YVDAYLRLAAIA 241 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~ 241 (760)
-+..+|.+..+.++|++.+.+..++...++. ...-...++.+|
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvay 50 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 50 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 3445566666666666666666666665542 233344444443
No 305
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=33.95 E-value=3.1e+02 Score=25.92 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHc
Q 004339 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELLI 93 (760)
Q Consensus 47 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 93 (760)
+.+-+..+|.+..+.++|++.+.+.++++..++. ...-...|..+|.
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYK 77 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYK 77 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHH
Confidence 4567788899999999999999999999988775 4455555555553
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.13 E-value=2.3e+02 Score=24.26 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 365 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 365 ~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
.+..+|.-+....-|. ..+..|...|..+...|++.+|..+|+..+..
T Consensus 83 dp~~if~~L~~~~IG~---~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGT---LSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp CHHHHHHHHHTTTTTT---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3666666655443222 45666777777777777777777777777774
No 307
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=31.65 E-value=3.2e+02 Score=25.40 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQ 228 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 228 (760)
-+..+|.+..+.++|++.+.+...+...++
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~~~ 39 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEKGE 39 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 445556666666666666666666665554
No 308
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=31.00 E-value=46 Score=24.93 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 389 WINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
...+|+=|...|+|+.|+.+|+.++..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456777777788888888888777764
No 309
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=30.32 E-value=80 Score=24.33 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 386 PDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
+..+...+..++..|+|++||.+.+++..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455566666777777777776665543
No 310
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=30.23 E-value=1.2e+02 Score=23.52 Aligned_cols=57 Identities=16% Similarity=0.060 Sum_probs=36.4
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKAL--GHIYVQLGQIEKAQELLRKAAK 76 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l--a~~~~~~g~~~~A~~~~~~al~ 76 (760)
+..|..++..|+|-+|-.+++.+-...|.. ...+..+ |......|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 566777888888888888888888777542 1122222 2333345666 7777777764
No 311
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.85 E-value=49 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004339 390 INLAHVYFAQGNFALAMKMYQNCLRKFYYN 419 (760)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 419 (760)
..+|..++..|+++.|+.+|-+|+..++.|
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 345666677777777777676777665444
No 312
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.95 E-value=84 Score=24.20 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
+..+-..+..+...|+|++||.+.++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45566788889999999999999888764
No 313
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.08 E-value=6e+02 Score=27.42 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=17.1
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
....+|..++.+..... ...|+..|...+.
T Consensus 311 ~~~s~~~a~a~~e~~~a-v~~A~~~Y~~~M~ 340 (592)
T 1f5n_A 311 CMENAVLALAQIENSAA-VQKAIAHYEQQMG 340 (592)
T ss_dssp BHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44556665555444332 5667777766655
No 314
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.05 E-value=51 Score=24.65 Aligned_cols=29 Identities=10% Similarity=-0.054 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
.-...+|+=|...|+|+.|+.+|+.+++.
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34567899999999999999999998864
No 315
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=27.87 E-value=1.6e+02 Score=29.98 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHc---cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 81 DAQAFIDLGELLI---SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 81 ~~~~~~~la~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
.|.++.+||.+-. ......++.+|.+|+......-.......|..+|-.+++.++|.+|+..+-.+-.
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 4555555555533 1123456778888888776655555677788899999999999999999988754
No 316
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=26.52 E-value=4.1e+02 Score=25.06 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 231 VDAYLRLAAIAKARNNLQLSIELVNEALKVN 261 (760)
Q Consensus 231 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 261 (760)
-.-++.++.+..+.++|++.+.++.++...+
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~ 38 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSNSL 38 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccC
Confidence 3445677888888899999999998888876
No 317
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=26.15 E-value=97 Score=25.29 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=14.3
Q ss_pred HHhccHHHHHHHHHHHHHh
Q 004339 433 YEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 433 ~~~g~~~~A~~~~~~al~~ 451 (760)
-..|+|.+|+.+|..++++
T Consensus 29 D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 5678888888888877754
No 318
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=25.97 E-value=1.8e+02 Score=29.52 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHc---cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 81 DAQAFIDLGELLI---SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 81 ~~~~~~~la~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
.|.++-+||.+-. ...-..++.+|.+++......-...+..-|..+|-+|++.+++.+|+..+-.+-.
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 4445555555432 1122247778888887776654455677888899999999999999999988754
No 319
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=24.98 E-value=4.1e+02 Score=24.48 Aligned_cols=171 Identities=10% Similarity=-0.003 Sum_probs=89.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHH----HCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 19 GLGQVQLKLGDFRSALTNFEKVLE----IYPD-NCETLKALGHIYVQL-GQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 19 ~la~~~~~~g~~~~A~~~~~~al~----~~p~-~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
.+|.+.-+.++|++...+..+++. .++. +.+-...+..+|-.. |....+...+...-+....+ .....+..-|
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqkek~~-~~~~~~i~~y 89 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQLNN-DELVKICSEY 89 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC-HHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 688889999999999999999998 6664 455555555555432 33333333333322221111 1122222222
Q ss_pred ccCCHhHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 93 ISSDTGAALDAFKTARTLLKKAGEEV---PIEVLNNIGVIHF-----EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 93 ~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
...=-.+-...+..++.+....-.+. .+..+-..|..|. ..|+.+.|...|+.|+.+..
T Consensus 90 r~kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~------------- 156 (227)
T 2o8p_A 90 VFSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLC------------- 156 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHH-------------
Confidence 21111122233444444443321111 1222333344443 34668888899988876310
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE-QIHDTVAASVLYRLILF 225 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~ 225 (760)
......+|-......+.+..|+ -++++++|..+..+++.
T Consensus 157 ----------------------~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 157 ----------------------EHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp ----------------------HCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ----------------------hhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 0011144444455555555544 57889999998888865
No 320
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=24.67 E-value=2.8e+02 Score=22.48 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 004339 483 EVRSTVAELENAVRVFSHLSAAS 505 (760)
Q Consensus 483 ~~~~a~~~l~~A~~~~~~l~~~~ 505 (760)
.+..|+..|..|+.+|..+....
T Consensus 33 ~y~eAl~lY~~Aie~l~~alk~e 55 (117)
T 2cpt_A 33 NYEEALQLYQHAVQYFLHVVKYE 55 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Confidence 67789999999999999887654
No 321
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=22.34 E-value=99 Score=34.21 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=24.5
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 61 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 61 (760)
.+..|..++..|+|.-|..+...++..+|+|..+...++.+|.++
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l 496 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQL 496 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555444
No 322
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=21.98 E-value=6.4e+02 Score=25.65 Aligned_cols=97 Identities=9% Similarity=0.139 Sum_probs=56.6
Q ss_pred HHHHHHHHcC---ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---hcCCCcHHHH
Q 004339 352 GAGVVLAEKG---QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK---FYYNTDAQIL 425 (760)
Q Consensus 352 ~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~ 425 (760)
.|-++++..| +|.-|+-.+-..-++.|....| .++.+|.+++.. +.......-|
T Consensus 247 ~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp--------------------~~~~Lf~~AI~~ar~~Y~~~hvYPY 306 (489)
T 4gq4_A 247 KLLWLLYDLGHLERYPMALGNLADLEELEPTPGRP--------------------DPLTLYHKGIASAKTYYRDEHIYPY 306 (489)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSC--------------------CHHHHHHHHHHHHHHHSTTCCSHHH
T ss_pred HHHHHHHhccchhhcchhhhcccCHhhcCCCCCCC--------------------CHHHHHHHHHHHHHHhcccCcccce
Confidence 3444444433 5666766666666676633222 222344444432 2344557778
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh------CCCChhHHhhHHHHHHH
Q 004339 426 LYLARTHYEAEQWQDCKKSLLRAIHL------APSNYTLRFDAGVAMQK 468 (760)
Q Consensus 426 ~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~ 468 (760)
.++|-.+++.+++.+|+.+|..+-.. ..+|..++-.+..+...
T Consensus 307 tYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIane 355 (489)
T 4gq4_A 307 MYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVAND 355 (489)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHT
T ss_pred eecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHH
Confidence 88888888888888888888777543 23445555555444333
No 323
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=21.92 E-value=1.3e+02 Score=22.84 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=11.1
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 004339 395 VYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~ 414 (760)
-+-..|+|.+|+.+|..++.
T Consensus 25 e~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 25 ELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 33445666666666655554
No 324
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=21.83 E-value=4.8e+02 Score=24.17 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELL 92 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 92 (760)
..-+..+|.+..+.++|++.+.+.++++..++. ...-...|..+|
T Consensus 8 re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaY 53 (236)
T 3iqu_A 8 RASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAY 53 (236)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 345566677777777777777777777776654 334444444444
No 325
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.75 E-value=5.2e+02 Score=31.02 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccH
Q 004339 386 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 438 (760)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 438 (760)
..+.....+-....++|..|++++.++++. . +..+++-.++.++..+|--
T Consensus 1284 ~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k-~~~~~~~~~~~~~~~l~w~ 1333 (1354)
T 3lxu_X 1284 SKAIQFALWHAYAHGHYGRMYKYVVKLIEE--K-RTRDHFVELAAINGALGHE 1333 (1354)
T ss_dssp TTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--T-CCHHHHHHHHHHHHHHSCH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHHhc--c-ccHHHHHHHHHHHHHcCCH
Confidence 333333333444678888888888888774 2 3455666666666655543
No 326
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.27 E-value=2.7e+02 Score=25.35 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=23.7
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
.++.+.|.|++|.+.+++.+.-+|.+..+...|..+.
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II 158 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNII 158 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3456677777777777777766666555555555543
No 327
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.02 E-value=5.9e+02 Score=24.88 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=24.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY 44 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 44 (760)
.+..|..++..|++.+|+..|+.+|..-
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 144 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRI 144 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4667888899999999999999998754
No 328
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=20.72 E-value=5.2e+02 Score=24.15 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Q 004339 49 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELL 92 (760)
Q Consensus 49 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 92 (760)
.-+..+|.+..+.++|++.+.+.++++..++. ...-...|..+|
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAY 49 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAY 49 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 34566777778888888888888888777664 344444455444
No 329
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=20.60 E-value=3.3e+02 Score=27.38 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=33.7
Q ss_pred hHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhc
Q 004339 457 TLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAA 504 (760)
Q Consensus 457 ~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~ 504 (760)
.+.||+|.+|...+.........+.+.+..|...|..|--+|..|.+.
T Consensus 115 ~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~l~~~ 162 (376)
T 3r9m_A 115 SMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKES 162 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666666654433223345667899999999999999998764
No 330
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.46 E-value=1.5e+02 Score=22.95 Aligned_cols=58 Identities=14% Similarity=0.014 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 391 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
..|..++..|+|=+|-+.++.+-...+.+.. .-+....|..+...|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4456667778888887777777765311100 22223334444456666 7777777765
No 331
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=20.28 E-value=2.3e+02 Score=21.54 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
+..+..-|.-+++.++|.+|...|+++..+.
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 5566677788899999999999999998764
No 332
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=20.25 E-value=5.5e+02 Score=24.21 Aligned_cols=30 Identities=7% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 232 DAYLRLAAIAKARNNLQLSIELVNEALKVN 261 (760)
Q Consensus 232 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 261 (760)
.-...++.+..+.++|++.+.++.++...+
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~ 58 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEAR 58 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 445677888888999999999999998865
Done!