Query 004340
Match_columns 760
No_of_seqs 1107 out of 2795
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 21:45:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1126 DNA-binding cell divis 100.0 3.1E-56 6.7E-61 479.4 43.5 625 96-750 1-636 (638)
2 KOG1173 Anaphase-promoting com 100.0 6.3E-46 1.4E-50 391.5 40.4 483 5-749 19-535 (611)
3 KOG4626 O-linked N-acetylgluco 100.0 5.6E-38 1.2E-42 331.8 36.2 308 443-750 195-503 (966)
4 KOG1155 Anaphase-promoting com 100.0 2.8E-35 6E-40 303.8 41.3 307 447-753 242-556 (559)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 9E-33 2E-37 336.9 57.1 321 436-758 571-892 (899)
6 KOG4626 O-linked N-acetylgluco 100.0 8.3E-35 1.8E-39 307.9 32.7 284 439-722 225-508 (966)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-31 3.1E-36 326.3 58.1 518 5-757 25-553 (899)
8 PRK11447 cellulose synthase su 100.0 2.1E-31 4.5E-36 330.9 57.5 530 3-756 29-690 (1157)
9 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-29 2.4E-34 296.9 45.2 262 444-705 306-577 (615)
10 PRK11447 cellulose synthase su 100.0 2.2E-28 4.8E-33 303.9 55.9 311 448-758 251-658 (1157)
11 TIGR00990 3a0801s09 mitochondr 100.0 1.5E-28 3.3E-33 287.2 42.0 323 434-757 129-562 (615)
12 PRK15174 Vi polysaccharide exp 100.0 2.8E-27 6E-32 276.2 40.5 294 443-737 87-385 (656)
13 PRK15174 Vi polysaccharide exp 100.0 1.9E-26 4.2E-31 269.2 41.0 319 439-758 49-373 (656)
14 PRK09782 bacteriophage N4 rece 100.0 6E-25 1.3E-29 262.1 49.6 303 436-742 380-715 (987)
15 KOG1174 Anaphase-promoting com 99.9 1E-23 2.2E-28 215.3 42.4 319 438-757 202-524 (564)
16 KOG1126 DNA-binding cell divis 99.9 1.3E-24 2.7E-29 235.5 35.9 268 438-705 359-626 (638)
17 KOG0547 Translocase of outer m 99.9 1.2E-24 2.5E-29 226.6 31.7 316 433-748 116-547 (606)
18 PRK11788 tetratricopeptide rep 99.9 4E-23 8.7E-28 228.6 38.2 300 432-732 35-346 (389)
19 PRK09782 bacteriophage N4 rece 99.9 6.4E-22 1.4E-26 236.3 50.8 286 449-738 458-745 (987)
20 KOG2002 TPR-containing nuclear 99.9 2.6E-22 5.7E-27 224.5 41.4 282 464-745 450-757 (1018)
21 PRK11788 tetratricopeptide rep 99.9 9.7E-23 2.1E-27 225.5 37.7 281 466-747 35-325 (389)
22 PRK10049 pgaA outer membrane p 99.9 2.7E-22 5.8E-27 239.2 42.1 308 437-745 54-468 (765)
23 KOG2002 TPR-containing nuclear 99.9 1.6E-22 3.4E-27 226.3 36.5 299 438-736 458-801 (1018)
24 PRK10049 pgaA outer membrane p 99.9 1.8E-22 4E-27 240.5 39.8 314 443-757 26-447 (765)
25 KOG0624 dsRNA-activated protei 99.9 1.1E-21 2.4E-26 196.1 30.4 319 431-749 37-386 (504)
26 KOG0547 Translocase of outer m 99.9 4.5E-22 9.8E-27 207.4 28.3 269 468-736 117-494 (606)
27 KOG1155 Anaphase-promoting com 99.9 4.6E-21 1E-25 198.9 32.7 313 438-757 170-527 (559)
28 KOG2076 RNA polymerase III tra 99.9 2.3E-20 4.9E-25 208.1 33.5 328 432-759 139-505 (895)
29 PF13429 TPR_15: Tetratricopep 99.9 3.8E-22 8.3E-27 210.4 15.2 262 470-733 12-277 (280)
30 PRK14574 hmsH outer membrane p 99.9 4.7E-18 1E-22 199.5 49.6 309 437-745 174-525 (822)
31 TIGR00540 hemY_coli hemY prote 99.9 3.8E-19 8.1E-24 197.4 37.7 302 431-733 83-399 (409)
32 KOG0548 Molecular co-chaperone 99.9 8.2E-20 1.8E-24 193.9 30.5 312 437-749 7-472 (539)
33 KOG1173 Anaphase-promoting com 99.9 8.6E-20 1.9E-24 194.2 29.4 281 435-716 247-535 (611)
34 KOG0495 HAT repeat protein [RN 99.9 8.9E-19 1.9E-23 188.1 34.9 317 433-750 517-863 (913)
35 PRK12370 invasion protein regu 99.9 2.3E-19 5E-24 206.4 33.0 268 465-735 257-537 (553)
36 PF13429 TPR_15: Tetratricopep 99.9 4.8E-21 1E-25 202.0 14.0 260 438-699 14-277 (280)
37 PRK10747 putative protoheme IX 99.8 5E-18 1.1E-22 187.5 37.9 299 432-734 84-391 (398)
38 PRK14574 hmsH outer membrane p 99.8 7.7E-18 1.7E-22 197.7 38.1 316 440-756 76-503 (822)
39 PRK12370 invasion protein regu 99.8 2.4E-18 5.1E-23 198.1 32.0 252 445-699 274-535 (553)
40 TIGR00540 hemY_coli hemY prote 99.8 1.9E-17 4E-22 183.9 35.9 291 467-757 85-390 (409)
41 PRK11189 lipoprotein NlpI; Pro 99.8 3.5E-18 7.6E-23 181.0 28.7 213 533-750 63-283 (296)
42 PLN03081 pentatricopeptide (PP 99.8 8.4E-17 1.8E-21 191.2 43.6 283 443-733 270-557 (697)
43 KOG0495 HAT repeat protein [RN 99.8 2.6E-17 5.5E-22 177.0 34.8 309 436-745 554-892 (913)
44 TIGR02521 type_IV_pilW type IV 99.8 1E-17 2.3E-22 169.9 28.6 203 533-735 30-234 (234)
45 KOG1125 TPR repeat-containing 99.8 1.2E-18 2.6E-23 186.6 22.1 256 470-725 289-563 (579)
46 KOG0624 dsRNA-activated protei 99.8 4.5E-18 9.7E-23 170.4 24.7 282 464-745 36-348 (504)
47 KOG2003 TPR repeat-containing 99.8 5.5E-18 1.2E-22 174.7 25.9 283 436-718 423-708 (840)
48 KOG1129 TPR repeat-containing 99.8 4.4E-19 9.6E-24 176.6 17.2 241 464-739 221-464 (478)
49 PLN03077 Protein ECB2; Provisi 99.8 2.9E-16 6.2E-21 191.1 44.9 282 442-733 434-720 (857)
50 KOG2003 TPR repeat-containing 99.8 2.3E-17 5E-22 170.2 27.7 279 468-746 421-702 (840)
51 COG3063 PilF Tfp pilus assembl 99.8 2.2E-17 4.8E-22 158.5 25.6 209 534-742 35-245 (250)
52 PRK10747 putative protoheme IX 99.8 1.2E-16 2.5E-21 176.6 35.3 288 467-757 85-381 (398)
53 KOG1174 Anaphase-promoting com 99.8 2.9E-17 6.4E-22 168.3 27.1 284 432-718 234-519 (564)
54 PRK11189 lipoprotein NlpI; Pro 99.8 4.3E-17 9.3E-22 172.7 29.0 232 446-716 40-283 (296)
55 PLN03081 pentatricopeptide (PP 99.8 2.7E-16 5.9E-21 186.8 38.2 305 446-758 238-549 (697)
56 KOG1125 TPR repeat-containing 99.8 4.7E-18 1E-22 182.0 20.4 257 434-690 287-562 (579)
57 KOG1129 TPR repeat-containing 99.8 1.4E-17 3.1E-22 165.9 22.4 218 538-756 227-448 (478)
58 PLN03077 Protein ECB2; Provisi 99.8 2.2E-15 4.8E-20 183.3 46.0 148 6-157 226-380 (857)
59 KOG0548 Molecular co-chaperone 99.8 4.1E-17 9E-22 173.5 26.2 289 469-758 5-447 (539)
60 TIGR02521 type_IV_pilW type IV 99.8 1.2E-16 2.7E-21 161.9 28.9 202 465-700 30-233 (234)
61 KOG4162 Predicted calmodulin-b 99.8 4E-16 8.6E-21 171.8 31.8 301 439-739 401-789 (799)
62 PLN03218 maturation of RBCL 1; 99.8 2.7E-15 5.8E-20 181.0 42.0 312 443-757 448-774 (1060)
63 KOG0550 Molecular chaperone (D 99.8 1.4E-17 3E-22 171.2 19.0 271 432-702 49-353 (486)
64 PLN02789 farnesyltranstransfer 99.8 3.7E-16 8E-21 165.4 28.0 246 480-742 34-311 (320)
65 COG3063 PilF Tfp pilus assembl 99.8 5.6E-16 1.2E-20 148.9 25.6 207 466-706 35-243 (250)
66 PLN03218 maturation of RBCL 1; 99.8 9.2E-15 2E-19 176.4 42.3 312 443-758 417-740 (1060)
67 KOG0550 Molecular chaperone (D 99.7 1.1E-16 2.4E-21 164.7 20.9 267 471-737 54-354 (486)
68 COG2956 Predicted N-acetylgluc 99.7 5.8E-15 1.3E-19 147.8 31.2 282 432-744 35-322 (389)
69 PLN02789 farnesyltranstransfer 99.7 2E-15 4.4E-20 159.8 29.4 230 444-705 49-308 (320)
70 KOG1127 TPR repeat-containing 99.7 1.6E-15 3.6E-20 170.0 29.8 295 437-733 567-913 (1238)
71 KOG4162 Predicted calmodulin-b 99.7 3E-15 6.4E-20 165.0 31.0 317 442-758 333-775 (799)
72 KOG2076 RNA polymerase III tra 99.7 6.8E-15 1.5E-19 164.8 31.8 297 438-734 179-513 (895)
73 COG2956 Predicted N-acetylgluc 99.7 3E-14 6.5E-19 142.7 32.9 234 434-668 71-314 (389)
74 KOG1156 N-terminal acetyltrans 99.7 6.9E-15 1.5E-19 159.3 30.6 324 434-757 9-459 (700)
75 KOG1840 Kinesin light chain [C 99.7 5E-15 1.1E-19 163.3 29.2 237 496-732 195-478 (508)
76 KOG1840 Kinesin light chain [C 99.7 4.3E-15 9.2E-20 163.9 27.7 241 458-698 191-478 (508)
77 cd05804 StaR_like StaR_like; a 99.7 5.6E-14 1.2E-18 153.5 34.4 301 433-734 7-337 (355)
78 KOG1127 TPR repeat-containing 99.6 1.8E-14 3.9E-19 161.8 23.9 306 445-751 471-898 (1238)
79 KOG1156 N-terminal acetyltrans 99.6 2.3E-13 5E-18 147.6 27.6 271 467-737 8-287 (700)
80 cd05804 StaR_like StaR_like; a 99.6 7.4E-13 1.6E-17 144.7 31.3 272 462-734 2-294 (355)
81 TIGR03302 OM_YfiO outer membra 99.6 1.5E-13 3.2E-18 141.0 23.7 191 529-736 28-235 (235)
82 KOG3785 Uncharacterized conser 99.6 8.2E-12 1.8E-16 126.3 34.4 288 447-739 166-496 (557)
83 COG3071 HemY Uncharacterized e 99.6 1.3E-11 2.8E-16 127.8 36.5 301 429-733 81-390 (400)
84 PF12569 NARP1: NMDA receptor- 99.6 2.6E-12 5.6E-17 143.7 32.7 293 438-733 10-334 (517)
85 TIGR03302 OM_YfiO outer membra 99.6 5.8E-13 1.3E-17 136.6 24.2 193 461-701 28-234 (235)
86 COG3071 HemY Uncharacterized e 99.5 2.5E-11 5.4E-16 125.7 33.3 288 468-758 86-382 (400)
87 PRK15359 type III secretion sy 99.5 3.2E-13 6.9E-18 127.0 16.0 121 590-713 15-135 (144)
88 PRK10370 formate-dependent nit 99.5 1.5E-12 3.2E-17 129.1 21.3 134 615-748 52-188 (198)
89 KOG2376 Signal recognition par 99.5 3.4E-11 7.5E-16 129.7 32.8 318 434-755 14-435 (652)
90 PRK15359 type III secretion sy 99.5 3.7E-13 8E-18 126.5 15.4 124 555-681 14-137 (144)
91 KOG1130 Predicted G-alpha GTPa 99.5 2.1E-13 4.6E-18 140.0 14.4 296 432-755 17-373 (639)
92 PRK10370 formate-dependent nit 99.5 5E-12 1.1E-16 125.3 20.5 124 581-704 52-178 (198)
93 KOG1915 Cell cycle control pro 99.5 3.4E-10 7.4E-15 118.8 34.5 302 431-732 72-499 (677)
94 KOG3785 Uncharacterized conser 99.5 1.4E-10 3E-15 117.5 29.6 168 438-613 63-230 (557)
95 PRK14720 transcript cleavage f 99.4 4.1E-11 8.8E-16 139.7 29.1 224 460-715 25-268 (906)
96 KOG1128 Uncharacterized conser 99.4 1.3E-11 2.8E-16 136.0 22.2 224 462-700 394-617 (777)
97 COG5010 TadD Flp pilus assembl 99.4 2.1E-11 4.4E-16 120.3 21.3 176 553-729 52-227 (257)
98 KOG2376 Signal recognition par 99.4 4.2E-10 9E-15 121.5 32.5 300 436-742 83-496 (652)
99 COG5010 TadD Flp pilus assembl 99.4 2.2E-11 4.7E-16 120.2 21.0 172 523-695 56-227 (257)
100 KOG3060 Uncharacterized conser 99.4 2.2E-10 4.8E-15 111.9 27.2 175 539-713 57-234 (289)
101 PRK15179 Vi polysaccharide bio 99.4 2.4E-11 5.3E-16 140.8 24.1 168 535-702 50-220 (694)
102 PRK15179 Vi polysaccharide bio 99.4 3.8E-11 8.2E-16 139.2 25.3 148 523-670 75-222 (694)
103 TIGR02552 LcrH_SycD type III s 99.4 6.9E-12 1.5E-16 116.7 15.5 123 623-745 4-126 (135)
104 PF04733 Coatomer_E: Coatomer 99.4 4.3E-12 9.2E-17 132.9 15.1 258 438-738 7-270 (290)
105 KOG3060 Uncharacterized conser 99.4 2.9E-10 6.3E-15 111.0 26.4 172 508-679 60-234 (289)
106 PF12569 NARP1: NMDA receptor- 99.4 3.2E-10 6.9E-15 127.0 30.0 267 465-734 3-292 (517)
107 PRK04841 transcriptional regul 99.4 5E-10 1.1E-14 137.9 34.4 304 436-739 413-766 (903)
108 KOG4340 Uncharacterized conser 99.4 5.9E-11 1.3E-15 117.8 20.4 283 440-725 18-331 (459)
109 KOG1128 Uncharacterized conser 99.4 3.6E-11 7.7E-16 132.6 20.6 225 497-736 395-619 (777)
110 PRK14720 transcript cleavage f 99.4 5.2E-11 1.1E-15 138.8 23.0 219 495-745 26-264 (906)
111 PF04733 Coatomer_E: Coatomer 99.4 9.6E-12 2.1E-16 130.3 14.8 211 535-753 36-251 (290)
112 KOG1915 Cell cycle control pro 99.3 9E-09 2E-13 108.3 35.2 315 432-748 207-550 (677)
113 TIGR02552 LcrH_SycD type III s 99.3 4.4E-11 9.4E-16 111.2 16.4 116 590-705 5-120 (135)
114 KOG1130 Predicted G-alpha GTPa 99.3 1.4E-11 3.1E-16 126.7 12.0 239 469-737 20-308 (639)
115 PRK04841 transcriptional regul 99.3 3.5E-09 7.6E-14 130.4 34.0 321 438-758 380-752 (903)
116 KOG0553 TPR repeat-containing 99.3 5.1E-11 1.1E-15 119.7 13.6 115 605-719 84-198 (304)
117 KOG0553 TPR repeat-containing 99.3 7.6E-11 1.7E-15 118.4 13.9 119 535-653 82-200 (304)
118 PRK15363 pathogenicity island 99.2 1.9E-10 4.2E-15 106.4 14.5 107 629-735 27-134 (157)
119 COG4783 Putative Zn-dependent 99.2 2.9E-09 6.2E-14 113.5 25.3 152 565-733 303-454 (484)
120 PF12895 Apc3: Anaphase-promot 99.2 6.9E-12 1.5E-16 106.3 4.5 75 14-88 1-82 (84)
121 COG4783 Putative Zn-dependent 99.2 2E-09 4.4E-14 114.6 22.6 150 598-747 302-451 (484)
122 PRK15363 pathogenicity island 99.2 7.8E-10 1.7E-14 102.5 15.2 106 527-632 27-133 (157)
123 KOG1941 Acetylcholine receptor 99.1 1.2E-08 2.6E-13 104.1 21.8 300 434-733 8-360 (518)
124 COG0457 NrfG FOG: TPR repeat [ 99.1 4.3E-07 9.4E-12 90.3 33.2 223 480-702 37-268 (291)
125 KOG4340 Uncharacterized conser 99.1 6.9E-09 1.5E-13 103.3 19.1 257 477-739 21-311 (459)
126 PLN03088 SGT1, suppressor of 99.1 2.3E-09 4.9E-14 116.5 16.7 112 606-717 6-117 (356)
127 PLN03088 SGT1, suppressor of 99.1 2E-09 4.3E-14 116.9 16.2 109 639-747 5-113 (356)
128 COG0457 NrfG FOG: TPR repeat [ 99.1 6.2E-07 1.3E-11 89.1 31.9 223 514-736 37-268 (291)
129 PRK10866 outer membrane biogen 99.0 4.9E-08 1.1E-12 99.9 23.6 182 532-730 30-238 (243)
130 PRK10866 outer membrane biogen 99.0 7.3E-08 1.6E-12 98.7 23.7 176 566-758 30-233 (243)
131 TIGR02795 tol_pal_ybgF tol-pal 99.0 9.2E-09 2E-13 92.8 14.3 104 637-740 3-112 (119)
132 PF13525 YfiO: Outer membrane 99.0 6E-08 1.3E-12 96.9 21.3 175 533-724 4-198 (203)
133 PF14938 SNAP: Soluble NSF att 99.0 1.1E-07 2.4E-12 100.2 23.6 210 471-737 40-270 (282)
134 PF13525 YfiO: Outer membrane 99.0 7E-08 1.5E-12 96.3 20.9 174 499-689 4-197 (203)
135 KOG1070 rRNA processing protei 99.0 1.5E-07 3.2E-12 110.4 25.9 220 520-740 1444-1670(1710)
136 KOG2047 mRNA splicing factor [ 99.0 1.5E-06 3.2E-11 95.1 31.6 296 438-736 108-543 (835)
137 COG3898 Uncharacterized membra 99.0 1.9E-06 4.2E-11 89.2 30.7 295 432-732 84-391 (531)
138 KOG2047 mRNA splicing factor [ 99.0 1.9E-06 4.1E-11 94.4 32.0 299 435-735 251-617 (835)
139 PRK10153 DNA-binding transcrip 98.9 8.7E-08 1.9E-12 108.3 22.9 146 465-637 338-488 (517)
140 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.5E-08 5.5E-13 89.9 14.9 104 603-706 3-112 (119)
141 PRK02603 photosystem I assembl 98.9 6.2E-08 1.3E-12 94.2 18.1 86 605-690 38-126 (172)
142 PRK02603 photosystem I assembl 98.9 7E-08 1.5E-12 93.8 18.0 95 533-627 34-131 (172)
143 cd00189 TPR Tetratricopeptide 98.9 1.6E-08 3.5E-13 85.8 11.9 97 639-735 3-99 (100)
144 PRK11906 transcriptional regul 98.9 1.1E-07 2.4E-12 102.3 20.5 172 465-661 252-432 (458)
145 KOG1070 rRNA processing protei 98.9 6.5E-07 1.4E-11 105.2 28.1 238 482-720 1440-1687(1710)
146 PF14938 SNAP: Soluble NSF att 98.9 5.1E-08 1.1E-12 102.7 17.5 145 605-750 78-245 (282)
147 PRK10153 DNA-binding transcrip 98.9 7.5E-08 1.6E-12 108.9 19.8 133 538-671 343-488 (517)
148 KOG2053 Mitochondrial inherita 98.9 3.5E-06 7.6E-11 95.8 32.5 297 435-732 12-336 (932)
149 COG4235 Cytochrome c biogenesi 98.9 5.1E-08 1.1E-12 99.1 16.0 114 587-700 141-257 (287)
150 COG4785 NlpI Lipoprotein NlpI, 98.9 1.7E-07 3.6E-12 89.7 18.4 197 534-735 65-268 (297)
151 COG4235 Cytochrome c biogenesi 98.9 6.8E-08 1.5E-12 98.2 16.8 129 617-745 137-268 (287)
152 CHL00033 ycf3 photosystem I as 98.9 5.5E-08 1.2E-12 94.1 15.6 136 583-738 14-154 (168)
153 KOG1941 Acetylcholine receptor 98.9 1.8E-07 3.9E-12 95.7 19.6 268 468-735 8-322 (518)
154 KOG3081 Vesicle coat complex C 98.9 1.3E-06 2.7E-11 86.7 24.8 254 440-704 16-276 (299)
155 KOG3081 Vesicle coat complex C 98.9 1.4E-06 2.9E-11 86.4 25.0 258 472-740 14-278 (299)
156 PRK11906 transcriptional regul 98.9 1.3E-07 2.8E-12 101.7 19.3 120 550-669 274-405 (458)
157 cd00189 TPR Tetratricopeptide 98.9 3.1E-08 6.6E-13 84.0 12.0 97 537-633 3-99 (100)
158 PF09976 TPR_21: Tetratricopep 98.9 1.1E-07 2.4E-12 89.5 16.6 117 614-731 23-145 (145)
159 PF13414 TPR_11: TPR repeat; P 98.8 1.4E-08 3E-13 82.4 8.1 67 669-735 2-69 (69)
160 CHL00033 ycf3 photosystem I as 98.8 8.5E-08 1.8E-12 92.8 14.8 100 550-649 15-119 (168)
161 PRK10803 tol-pal system protei 98.8 1.8E-07 3.9E-12 96.5 16.8 113 636-748 142-261 (263)
162 PF13414 TPR_11: TPR repeat; P 98.8 2.3E-08 5E-13 81.0 8.2 66 534-599 3-69 (69)
163 PF09976 TPR_21: Tetratricopep 98.8 3.4E-07 7.4E-12 86.2 16.7 116 546-662 23-144 (145)
164 PF12895 Apc3: Anaphase-promot 98.8 2.1E-08 4.5E-13 84.9 7.0 81 649-730 2-84 (84)
165 KOG0543 FKBP-type peptidyl-pro 98.7 1.6E-07 3.5E-12 98.6 14.9 147 571-736 211-358 (397)
166 PRK15331 chaperone protein Sic 98.7 1.3E-07 2.9E-12 88.1 12.4 108 632-740 33-140 (165)
167 COG4785 NlpI Lipoprotein NlpI, 98.7 1.1E-06 2.5E-11 84.1 18.6 197 465-700 64-267 (297)
168 KOG4648 Uncharacterized conser 98.7 1.2E-08 2.6E-13 103.3 4.0 233 503-744 100-341 (536)
169 KOG4648 Uncharacterized conser 98.7 1.5E-08 3.3E-13 102.6 4.6 226 437-705 102-336 (536)
170 PF13432 TPR_16: Tetratricopep 98.7 5.6E-08 1.2E-12 77.7 7.0 64 675-738 2-65 (65)
171 KOG0543 FKBP-type peptidyl-pro 98.7 5.1E-07 1.1E-11 94.9 15.4 130 535-664 209-354 (397)
172 KOG3617 WD40 and TPR repeat-co 98.7 4.5E-06 9.8E-11 93.3 23.4 274 444-730 779-1171(1416)
173 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 6.6E-07 1.4E-11 96.9 16.4 119 574-695 175-293 (395)
174 PRK15331 chaperone protein Sic 98.6 5.4E-07 1.2E-11 84.1 13.4 100 599-698 34-133 (165)
175 KOG2053 Mitochondrial inherita 98.6 5.1E-05 1.1E-09 86.6 31.3 226 477-703 20-259 (932)
176 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 8.1E-07 1.7E-11 96.3 16.3 123 538-663 173-295 (395)
177 PF13432 TPR_16: Tetratricopep 98.6 1.5E-07 3.3E-12 75.2 7.8 60 575-634 4-63 (65)
178 PRK10803 tol-pal system protei 98.6 1.5E-06 3.2E-11 89.7 17.0 101 604-704 144-251 (263)
179 COG3898 Uncharacterized membra 98.6 7.8E-05 1.7E-09 77.6 29.0 259 434-699 122-392 (531)
180 COG4105 ComL DNA uptake lipopr 98.6 9.7E-06 2.1E-10 80.9 20.6 69 433-501 35-106 (254)
181 PF12688 TPR_5: Tetratrico pep 98.5 1.9E-06 4.1E-11 77.4 13.5 92 571-662 4-101 (120)
182 PF12688 TPR_5: Tetratrico pep 98.5 2.2E-06 4.7E-11 77.1 13.7 94 604-697 3-102 (120)
183 COG4700 Uncharacterized protei 98.5 1.8E-05 3.9E-10 74.3 19.3 147 583-731 71-220 (251)
184 KOG2471 TPR repeat-containing 98.5 6E-05 1.3E-09 80.4 25.3 267 468-735 208-650 (696)
185 COG4105 ComL DNA uptake lipopr 98.5 4.8E-05 1E-09 76.0 23.1 189 533-738 33-238 (254)
186 PF13371 TPR_9: Tetratricopept 98.5 6.3E-07 1.4E-11 73.4 8.3 71 677-747 2-72 (73)
187 KOG3617 WD40 and TPR repeat-co 98.5 3.7E-05 8E-10 86.3 23.5 229 487-728 790-1104(1416)
188 PF14559 TPR_19: Tetratricopep 98.4 7.8E-07 1.7E-11 71.7 7.9 65 681-745 2-66 (68)
189 COG1729 Uncharacterized protei 98.4 5.4E-06 1.2E-10 83.5 15.0 100 605-704 144-249 (262)
190 KOG4234 TPR repeat-containing 98.4 3E-06 6.5E-11 80.3 11.8 114 605-718 98-216 (271)
191 KOG4234 TPR repeat-containing 98.4 3.7E-06 8E-11 79.7 12.3 107 573-679 100-211 (271)
192 PF14559 TPR_19: Tetratricopep 98.4 7.1E-07 1.5E-11 71.9 6.6 66 647-712 2-67 (68)
193 KOG1586 Protein required for f 98.4 4.5E-05 9.8E-10 74.2 19.7 162 540-702 40-227 (288)
194 COG1729 Uncharacterized protei 98.4 6.4E-06 1.4E-10 83.0 14.0 106 435-571 144-252 (262)
195 PF13371 TPR_9: Tetratricopept 98.4 2.4E-06 5.2E-11 69.9 8.9 69 643-711 2-70 (73)
196 PF13512 TPR_18: Tetratricopep 98.3 9.9E-06 2.2E-10 74.1 12.8 67 434-500 12-81 (142)
197 KOG2471 TPR repeat-containing 98.3 2E-05 4.3E-10 83.9 16.0 284 434-717 19-382 (696)
198 COG4700 Uncharacterized protei 98.3 0.0001 2.2E-09 69.4 18.8 150 547-698 69-221 (251)
199 PF13512 TPR_18: Tetratricopep 98.3 2E-05 4.4E-10 72.1 14.0 104 638-741 12-136 (142)
200 KOG2796 Uncharacterized conser 98.3 0.0015 3.3E-08 64.9 27.6 226 465-703 68-319 (366)
201 KOG4555 TPR repeat-containing 98.2 5.5E-05 1.2E-09 66.9 13.5 98 640-737 47-148 (175)
202 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 4.1E-05 8.9E-10 82.7 14.5 69 529-597 70-141 (453)
203 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 4.2E-05 9.2E-10 82.6 14.0 69 495-563 70-141 (453)
204 KOG2610 Uncharacterized conser 98.1 0.00016 3.5E-09 73.8 16.9 153 543-695 112-272 (491)
205 PF10300 DUF3808: Protein of u 98.1 0.0016 3.4E-08 73.5 26.7 156 580-735 200-378 (468)
206 KOG2300 Uncharacterized conser 98.1 0.0095 2.1E-07 64.2 30.1 122 435-556 10-149 (629)
207 KOG2796 Uncharacterized conser 98.1 0.0014 3.1E-08 65.1 22.2 149 585-739 166-321 (366)
208 KOG2610 Uncharacterized conser 98.0 0.00022 4.8E-09 72.9 16.7 159 573-731 108-274 (491)
209 PF07079 DUF1347: Protein of u 98.0 0.023 5.1E-07 60.9 32.0 53 677-730 469-521 (549)
210 PF05843 Suf: Suppressor of fo 98.0 6.7E-05 1.5E-09 78.8 13.4 135 605-739 4-142 (280)
211 PF06552 TOM20_plant: Plant sp 98.0 5.1E-05 1.1E-09 71.6 11.0 87 618-704 7-114 (186)
212 PF04184 ST7: ST7 protein; In 98.0 0.00097 2.1E-08 72.3 21.7 59 570-628 261-321 (539)
213 KOG1586 Protein required for f 98.0 0.0019 4.1E-08 63.2 21.5 183 543-740 23-231 (288)
214 PF13424 TPR_12: Tetratricopep 98.0 8.1E-06 1.8E-10 67.8 4.4 63 671-733 6-75 (78)
215 PF04184 ST7: ST7 protein; In 98.0 0.00042 9.1E-09 75.0 18.3 198 530-740 164-382 (539)
216 KOG4555 TPR repeat-containing 97.9 0.00038 8.2E-09 61.7 14.3 97 537-633 46-146 (175)
217 KOG1914 mRNA cleavage and poly 97.9 0.033 7.1E-07 61.0 31.3 288 445-733 32-464 (656)
218 PF05843 Suf: Suppressor of fo 97.9 0.00025 5.3E-09 74.6 15.5 135 536-670 3-141 (280)
219 PF13424 TPR_12: Tetratricopep 97.9 1.5E-05 3.3E-10 66.1 5.1 22 607-628 10-31 (78)
220 PF06552 TOM20_plant: Plant sp 97.9 0.00011 2.3E-09 69.5 11.0 88 584-671 7-115 (186)
221 PF02259 FAT: FAT domain; Int 97.9 0.0082 1.8E-07 65.2 27.9 67 671-737 253-342 (352)
222 KOG4507 Uncharacterized conser 97.9 0.00034 7.5E-09 76.2 15.5 102 646-747 617-719 (886)
223 KOG1585 Protein required for f 97.8 0.0015 3.2E-08 64.4 17.6 193 534-727 31-250 (308)
224 PF13281 DUF4071: Domain of un 97.8 0.004 8.7E-08 66.8 22.5 83 464-546 139-229 (374)
225 KOG1258 mRNA processing protei 97.8 0.097 2.1E-06 58.5 33.6 178 571-748 300-485 (577)
226 KOG4642 Chaperone-dependent E3 97.8 0.00015 3.2E-09 71.1 10.5 94 538-631 14-107 (284)
227 KOG1550 Extracellular protein 97.8 0.019 4.1E-07 66.3 29.7 278 448-738 228-543 (552)
228 KOG0530 Protein farnesyltransf 97.8 0.006 1.3E-07 60.9 21.5 186 446-648 40-233 (318)
229 PF13281 DUF4071: Domain of un 97.8 0.0033 7.2E-08 67.4 21.2 176 569-745 142-346 (374)
230 KOG1585 Protein required for f 97.8 0.0051 1.1E-07 60.7 20.4 198 467-694 32-251 (308)
231 KOG0530 Protein farnesyltransf 97.7 0.0084 1.8E-07 59.9 20.4 170 445-614 56-233 (318)
232 PF10345 Cohesin_load: Cohesin 97.7 0.1 2.3E-06 61.2 33.8 263 465-728 58-428 (608)
233 PF02259 FAT: FAT domain; Int 97.6 0.015 3.2E-07 63.2 24.5 112 634-745 144-299 (352)
234 KOG0985 Vesicle coat protein c 97.6 0.0069 1.5E-07 70.2 21.4 170 439-628 1055-1246(1666)
235 PF08631 SPO22: Meiosis protei 97.6 0.084 1.8E-06 55.4 28.8 228 476-731 3-273 (278)
236 KOG4642 Chaperone-dependent E3 97.6 0.00047 1E-08 67.6 10.1 93 573-665 15-107 (284)
237 KOG0545 Aryl-hydrocarbon recep 97.6 0.00078 1.7E-08 66.2 11.4 122 602-739 178-299 (329)
238 KOG0985 Vesicle coat protein c 97.5 0.006 1.3E-07 70.6 19.7 131 472-620 1054-1184(1666)
239 PF13428 TPR_14: Tetratricopep 97.5 0.00025 5.5E-09 51.6 5.8 40 672-711 3-42 (44)
240 KOG3616 Selective LIM binding 97.5 0.039 8.5E-07 62.0 25.0 276 444-738 673-1029(1636)
241 PF13428 TPR_14: Tetratricopep 97.5 0.00023 5E-09 51.7 5.4 41 535-575 2-42 (44)
242 COG2976 Uncharacterized protei 97.5 0.013 2.8E-07 56.2 18.2 130 620-750 70-205 (207)
243 KOG1914 mRNA cleavage and poly 97.5 0.049 1.1E-06 59.7 24.6 186 550-735 309-503 (656)
244 PF00515 TPR_1: Tetratricopept 97.5 0.00021 4.6E-09 48.6 4.4 33 101-133 1-33 (34)
245 COG2909 MalT ATP-dependent tra 97.4 0.2 4.3E-06 58.4 30.5 231 499-729 414-684 (894)
246 KOG0376 Serine-threonine phosp 97.4 0.00016 3.5E-09 77.9 5.5 109 607-715 9-117 (476)
247 COG3118 Thioredoxin domain-con 97.4 0.0065 1.4E-07 62.1 15.8 132 432-564 134-266 (304)
248 KOG0376 Serine-threonine phosp 97.4 0.0003 6.5E-09 75.9 6.3 109 572-680 8-116 (476)
249 COG0790 FOG: TPR repeat, SEL1 97.3 0.059 1.3E-06 57.0 23.6 184 546-738 53-271 (292)
250 KOG1550 Extracellular protein 97.3 0.1 2.2E-06 60.4 26.9 258 481-751 227-519 (552)
251 KOG2300 Uncharacterized conser 97.3 0.12 2.6E-06 56.1 24.8 215 426-667 276-516 (629)
252 PF10300 DUF3808: Protein of u 97.3 0.069 1.5E-06 60.3 24.9 174 489-665 180-376 (468)
253 COG3118 Thioredoxin domain-con 97.3 0.012 2.5E-07 60.2 16.6 130 535-665 135-265 (304)
254 PF07719 TPR_2: Tetratricopept 97.3 0.00043 9.3E-09 47.0 4.4 33 101-133 1-33 (34)
255 KOG0545 Aryl-hydrocarbon recep 97.3 0.0073 1.6E-07 59.6 14.0 111 467-601 179-297 (329)
256 PF08631 SPO22: Meiosis protei 97.3 0.21 4.6E-06 52.4 26.4 227 442-697 3-273 (278)
257 KOG1258 mRNA processing protei 97.2 0.56 1.2E-05 52.7 30.1 299 449-747 62-409 (577)
258 PF00515 TPR_1: Tetratricopept 97.2 0.00069 1.5E-08 46.0 4.8 33 705-737 2-34 (34)
259 PF13181 TPR_8: Tetratricopept 97.2 0.00051 1.1E-08 46.6 3.8 32 101-132 1-32 (34)
260 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.5 1.1E-05 51.0 29.0 65 431-495 41-105 (660)
261 PF13431 TPR_17: Tetratricopep 97.2 0.00043 9.3E-09 47.2 3.2 28 593-620 4-31 (34)
262 PF07719 TPR_2: Tetratricopept 97.1 0.00087 1.9E-08 45.4 4.7 33 705-737 2-34 (34)
263 PF13431 TPR_17: Tetratricopep 97.1 0.00045 9.7E-09 47.1 3.2 26 696-721 5-30 (34)
264 PF04910 Tcf25: Transcriptiona 97.1 0.019 4.2E-07 62.3 17.5 188 480-701 8-224 (360)
265 KOG3616 Selective LIM binding 97.1 0.049 1.1E-06 61.3 20.5 148 570-727 663-847 (1636)
266 PF03704 BTAD: Bacterial trans 97.1 0.012 2.6E-07 55.2 13.7 61 672-732 64-124 (146)
267 PF04049 APC8: Anaphase promot 97.1 0.0015 3.3E-08 60.6 7.1 87 3-89 11-131 (142)
268 KOG2041 WD40 repeat protein [G 97.1 0.067 1.4E-06 60.1 20.4 190 447-661 678-877 (1189)
269 COG0790 FOG: TPR repeat, SEL1 97.0 0.32 6.9E-06 51.3 25.7 106 534-643 109-230 (292)
270 PF03704 BTAD: Bacterial trans 97.0 0.02 4.3E-07 53.7 14.2 112 574-698 12-124 (146)
271 COG2909 MalT ATP-dependent tra 97.0 0.45 9.8E-06 55.6 27.2 266 463-734 344-648 (894)
272 KOG0551 Hsp90 co-chaperone CNS 96.9 0.026 5.7E-07 58.3 15.0 96 534-629 81-180 (390)
273 PRK11619 lytic murein transgly 96.9 1.3 2.9E-05 51.9 33.5 293 433-732 34-374 (644)
274 KOG1308 Hsp70-interacting prot 96.9 0.00058 1.3E-08 70.5 2.5 124 607-731 119-242 (377)
275 PF08424 NRDE-2: NRDE-2, neces 96.8 0.084 1.8E-06 56.6 19.1 116 551-666 48-184 (321)
276 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.26 5.7E-06 53.0 21.8 215 522-739 290-537 (660)
277 KOG0551 Hsp90 co-chaperone CNS 96.8 0.0091 2E-07 61.6 10.6 101 602-702 81-185 (390)
278 PF08424 NRDE-2: NRDE-2, neces 96.8 0.094 2E-06 56.2 19.1 117 584-700 47-184 (321)
279 PF04910 Tcf25: Transcriptiona 96.8 0.053 1.1E-06 58.9 17.1 169 562-738 34-227 (360)
280 KOG0890 Protein kinase of the 96.6 0.71 1.5E-05 59.4 26.9 110 634-745 1668-1796(2382)
281 PF07079 DUF1347: Protein of u 96.6 1.5 3.2E-05 47.7 31.2 132 432-563 6-157 (549)
282 KOG1308 Hsp70-interacting prot 96.5 0.0023 5E-08 66.2 4.2 95 574-668 120-214 (377)
283 KOG2041 WD40 repeat protein [G 96.5 0.6 1.3E-05 52.8 22.8 83 465-559 795-877 (1189)
284 COG2976 Uncharacterized protei 96.5 0.25 5.5E-06 47.6 17.4 92 608-700 95-189 (207)
285 PF13181 TPR_8: Tetratricopept 96.5 0.004 8.7E-08 42.1 4.0 32 705-736 2-33 (34)
286 PRK10941 hypothetical protein; 96.5 0.021 4.6E-07 59.0 10.8 82 672-753 183-264 (269)
287 PF14853 Fis1_TPR_C: Fis1 C-te 96.4 0.012 2.6E-07 44.4 6.4 45 705-749 2-46 (53)
288 PF09613 HrpB1_HrpK: Bacterial 96.4 0.16 3.5E-06 47.6 15.0 77 644-720 18-94 (160)
289 KOG0890 Protein kinase of the 96.3 1.4 3.1E-05 56.8 27.0 304 424-734 1375-1732(2382)
290 PF10345 Cohesin_load: Cohesin 96.3 3.6 7.8E-05 48.4 32.0 262 432-694 59-428 (608)
291 PF13176 TPR_7: Tetratricopept 96.2 0.0077 1.7E-07 41.5 3.9 28 103-130 1-28 (36)
292 KOG3364 Membrane protein invol 96.2 0.069 1.5E-06 48.1 10.7 81 669-749 31-116 (149)
293 KOG3783 Uncharacterized conser 96.0 0.26 5.7E-06 54.5 16.3 83 449-531 250-334 (546)
294 PF09613 HrpB1_HrpK: Bacterial 96.0 0.17 3.8E-06 47.5 13.0 75 441-515 19-93 (160)
295 KOG3783 Uncharacterized conser 95.9 2.8 6.1E-05 46.7 23.9 66 672-737 451-524 (546)
296 PF13174 TPR_6: Tetratricopept 95.7 0.019 4.1E-07 38.3 4.2 33 467-499 1-33 (33)
297 KOG1538 Uncharacterized conser 95.7 0.39 8.5E-06 53.8 16.1 50 440-494 564-613 (1081)
298 TIGR02561 HrpB1_HrpK type III 95.6 0.23 4.9E-06 45.9 12.0 108 432-561 13-120 (153)
299 PF13174 TPR_6: Tetratricopept 95.5 0.021 4.5E-07 38.1 3.9 31 706-736 2-32 (33)
300 KOG1464 COP9 signalosome, subu 95.5 1.3 2.8E-05 44.8 17.7 188 444-631 39-260 (440)
301 PF14853 Fis1_TPR_C: Fis1 C-te 95.5 0.064 1.4E-06 40.5 6.6 41 467-507 2-42 (53)
302 PF13176 TPR_7: Tetratricopept 95.3 0.013 2.9E-07 40.3 2.4 26 707-732 2-27 (36)
303 PRK10941 hypothetical protein; 95.3 0.19 4.1E-06 52.1 11.8 77 638-714 183-259 (269)
304 KOG4507 Uncharacterized conser 95.2 0.064 1.4E-06 59.2 8.1 109 573-681 611-721 (886)
305 PF12968 DUF3856: Domain of Un 95.0 0.78 1.7E-05 40.5 12.6 109 427-562 4-128 (144)
306 PF04781 DUF627: Protein of un 95.0 0.21 4.7E-06 43.6 9.2 28 541-568 3-30 (111)
307 KOG1464 COP9 signalosome, subu 94.9 0.9 2E-05 45.9 14.6 187 547-733 40-260 (440)
308 PRK15180 Vi polysaccharide bio 94.9 0.16 3.4E-06 54.9 9.8 124 579-702 300-423 (831)
309 smart00028 TPR Tetratricopepti 94.8 0.038 8.2E-07 35.7 3.5 32 102-133 2-33 (34)
310 PRK15180 Vi polysaccharide bio 94.7 1.7 3.6E-05 47.4 16.7 126 442-567 299-424 (831)
311 KOG2396 HAT (Half-A-TPR) repea 94.6 0.35 7.7E-06 52.9 11.8 95 551-645 88-183 (568)
312 KOG0128 RNA-binding protein SA 94.6 11 0.00023 44.3 23.9 257 445-702 92-379 (881)
313 COG4649 Uncharacterized protei 94.6 1.9 4.1E-05 40.9 14.9 62 436-497 62-125 (221)
314 KOG3824 Huntingtin interacting 94.6 0.12 2.6E-06 52.9 7.6 77 638-714 118-194 (472)
315 PRK13184 pknD serine/threonine 94.5 8.2 0.00018 47.1 24.1 279 446-731 533-867 (932)
316 KOG2422 Uncharacterized conser 94.4 2.9 6.2E-05 46.9 18.3 91 645-736 351-451 (665)
317 KOG3807 Predicted membrane pro 94.4 6.3 0.00014 41.2 19.5 20 721-740 379-398 (556)
318 PF12968 DUF3856: Domain of Un 94.4 1.4 3E-05 39.0 12.7 85 648-732 21-128 (144)
319 PF14561 TPR_20: Tetratricopep 94.4 0.3 6.6E-06 41.5 8.7 44 658-701 10-53 (90)
320 COG5159 RPN6 26S proteasome re 94.3 7.3 0.00016 39.9 22.1 266 436-701 7-316 (421)
321 KOG3824 Huntingtin interacting 94.2 0.12 2.6E-06 52.9 6.8 80 429-508 113-192 (472)
322 PF04781 DUF627: Protein of un 94.2 0.42 9.1E-06 41.8 9.3 46 688-733 62-107 (111)
323 PF09986 DUF2225: Uncharacteri 94.1 0.62 1.3E-05 46.7 11.7 30 637-666 166-195 (214)
324 COG3914 Spy Predicted O-linked 94.1 2 4.2E-05 48.3 16.2 132 548-679 45-185 (620)
325 KOG2396 HAT (Half-A-TPR) repea 94.1 0.7 1.5E-05 50.7 12.6 95 585-679 88-183 (568)
326 PF09986 DUF2225: Uncharacteri 94.1 0.34 7.4E-06 48.5 9.8 68 671-738 119-199 (214)
327 smart00028 TPR Tetratricopepti 94.0 0.082 1.8E-06 34.0 3.7 31 706-736 3-33 (34)
328 COG3914 Spy Predicted O-linked 94.0 1.6 3.5E-05 48.9 15.5 131 583-713 46-185 (620)
329 TIGR02561 HrpB1_HrpK type III 94.0 0.63 1.4E-05 43.0 10.4 72 614-685 22-93 (153)
330 PRK13184 pknD serine/threonine 93.8 5.5 0.00012 48.5 20.8 102 470-572 479-590 (932)
331 PF04190 DUF410: Protein of un 93.8 9.5 0.00021 39.5 21.2 25 533-557 89-113 (260)
332 PF14561 TPR_20: Tetratricopep 93.7 0.63 1.4E-05 39.6 9.4 34 596-629 16-49 (90)
333 KOG1538 Uncharacterized conser 93.5 3.4 7.4E-05 46.7 16.7 176 471-662 637-830 (1081)
334 COG4649 Uncharacterized protei 93.5 6.1 0.00013 37.6 15.9 24 572-595 98-121 (221)
335 COG4976 Predicted methyltransf 93.4 0.15 3.3E-06 50.1 5.6 60 680-739 5-64 (287)
336 KOG1839 Uncharacterized protei 93.4 0.76 1.6E-05 56.1 12.5 162 571-732 935-1127(1236)
337 KOG1839 Uncharacterized protei 93.3 0.7 1.5E-05 56.4 12.2 163 537-699 935-1128(1236)
338 PF10602 RPN7: 26S proteasome 93.2 0.97 2.1E-05 43.8 11.1 94 570-663 38-140 (177)
339 KOG2422 Uncharacterized conser 93.1 6.1 0.00013 44.4 17.9 92 609-701 349-450 (665)
340 KOG3364 Membrane protein invol 93.0 1.7 3.6E-05 39.5 11.0 79 636-714 32-115 (149)
341 KOG2581 26S proteasome regulat 92.9 16 0.00035 39.4 20.0 63 538-600 213-279 (493)
342 KOG1463 26S proteasome regulat 92.8 15 0.00032 38.8 21.1 266 436-701 8-318 (411)
343 KOG1310 WD40 repeat protein [G 92.7 0.33 7.3E-06 53.2 7.5 96 541-636 381-479 (758)
344 PF10602 RPN7: 26S proteasome 92.3 1.7 3.8E-05 42.1 11.5 96 602-697 36-140 (177)
345 COG4941 Predicted RNA polymera 92.2 15 0.00033 38.6 18.2 193 550-751 212-412 (415)
346 KOG1310 WD40 repeat protein [G 92.2 0.41 8.8E-06 52.6 7.3 102 602-703 374-478 (758)
347 KOG1463 26S proteasome regulat 92.1 18 0.00039 38.2 19.3 268 470-737 8-320 (411)
348 PF04053 Coatomer_WDAD: Coatom 91.6 6.1 0.00013 44.2 16.3 130 537-695 298-427 (443)
349 KOG0529 Protein geranylgeranyl 91.4 5.1 0.00011 43.3 14.4 128 583-710 90-235 (421)
350 KOG2114 Vacuolar assembly/sort 91.4 11 0.00024 44.2 17.9 240 443-704 345-595 (933)
351 KOG0529 Protein geranylgeranyl 91.3 11 0.00024 40.7 16.8 166 479-644 41-237 (421)
352 COG2912 Uncharacterized conser 91.3 0.97 2.1E-05 46.2 8.6 77 675-751 186-262 (269)
353 PF11817 Foie-gras_1: Foie gra 91.1 9.4 0.0002 39.2 16.0 59 638-696 180-244 (247)
354 PF04053 Coatomer_WDAD: Coatom 91.0 14 0.0003 41.4 18.3 47 441-489 270-318 (443)
355 KOG4814 Uncharacterized conser 91.0 2 4.4E-05 48.4 11.2 97 570-666 356-458 (872)
356 KOG4814 Uncharacterized conser 91.0 1.7 3.7E-05 49.0 10.7 97 604-700 356-458 (872)
357 KOG2581 26S proteasome regulat 90.7 14 0.0003 39.9 16.5 100 535-634 170-279 (493)
358 COG4976 Predicted methyltransf 90.6 0.31 6.8E-06 48.0 4.2 59 612-670 5-63 (287)
359 COG5159 RPN6 26S proteasome re 90.4 24 0.00051 36.4 19.7 267 470-736 7-317 (421)
360 PRK11619 lytic murein transgly 90.1 46 0.001 39.3 33.4 278 444-729 111-464 (644)
361 COG5191 Uncharacterized conser 89.6 0.65 1.4E-05 47.8 5.7 82 526-607 99-181 (435)
362 COG1747 Uncharacterized N-term 89.5 40 0.00086 37.7 27.5 78 516-596 82-159 (711)
363 KOG0128 RNA-binding protein SA 89.4 52 0.0011 38.9 21.5 300 442-746 200-539 (881)
364 TIGR02508 type_III_yscG type I 89.4 2.3 5.1E-05 36.4 7.8 75 13-87 16-91 (115)
365 PF09477 Type_III_YscG: Bacter 89.4 3.2 7E-05 36.0 8.7 85 4-88 8-93 (116)
366 PF13374 TPR_10: Tetratricopep 89.3 0.86 1.9E-05 31.8 4.7 30 466-495 2-31 (42)
367 PF12862 Apc5: Anaphase-promot 88.9 1.7 3.8E-05 37.2 7.2 31 706-736 43-73 (94)
368 PF10579 Rapsyn_N: Rapsyn N-te 88.7 2.5 5.4E-05 34.6 7.3 63 432-494 6-71 (80)
369 PF13374 TPR_10: Tetratricopep 88.6 0.79 1.7E-05 32.0 4.2 30 101-130 2-31 (42)
370 COG5191 Uncharacterized conser 88.4 0.92 2E-05 46.7 5.8 88 556-643 95-183 (435)
371 KOG3807 Predicted membrane pro 87.8 39 0.00085 35.5 19.6 24 687-710 379-402 (556)
372 COG2912 Uncharacterized conser 87.6 3.6 7.7E-05 42.2 9.4 75 639-713 184-258 (269)
373 PF10516 SHNi-TPR: SHNi-TPR; 87.3 0.87 1.9E-05 31.7 3.4 29 102-130 2-30 (38)
374 KOG4014 Uncharacterized conser 87.1 30 0.00064 33.4 15.7 184 531-733 31-233 (248)
375 COG4941 Predicted RNA polymera 86.9 45 0.00098 35.3 17.6 189 516-713 212-408 (415)
376 PF15015 NYD-SP12_N: Spermatog 86.8 9.8 0.00021 41.1 12.3 89 574-662 182-288 (569)
377 COG3629 DnrI DNA-binding trans 86.5 5.7 0.00012 41.2 10.4 63 636-698 153-215 (280)
378 KOG2063 Vacuolar assembly/sort 86.4 49 0.0011 40.0 19.2 112 468-579 506-637 (877)
379 COG3629 DnrI DNA-binding trans 85.9 4.6 0.0001 41.9 9.4 62 535-596 154-215 (280)
380 PF09670 Cas_Cas02710: CRISPR- 85.8 8.7 0.00019 42.2 12.2 62 434-495 133-198 (379)
381 PF11207 DUF2989: Protein of u 85.6 6.4 0.00014 38.6 9.6 53 568-621 141-197 (203)
382 PF09205 DUF1955: Domain of un 85.2 25 0.00055 32.0 12.3 32 432-463 2-33 (161)
383 PF12739 TRAPPC-Trs85: ER-Golg 84.9 29 0.00062 38.7 15.9 29 707-735 373-401 (414)
384 TIGR03504 FimV_Cterm FimV C-te 84.5 3.9 8.3E-05 29.6 5.7 24 708-731 3-26 (44)
385 PF12862 Apc5: Anaphase-promot 84.4 4.5 9.7E-05 34.6 7.3 26 640-665 45-70 (94)
386 COG1747 Uncharacterized N-term 84.4 76 0.0016 35.6 26.9 182 461-647 61-250 (711)
387 PF12739 TRAPPC-Trs85: ER-Golg 83.9 49 0.0011 36.8 17.2 27 641-667 375-401 (414)
388 PRK12798 chemotaxis protein; R 83.5 75 0.0016 34.8 21.7 194 433-627 113-320 (421)
389 PF15015 NYD-SP12_N: Spermatog 83.3 13 0.00027 40.3 11.3 55 539-593 233-287 (569)
390 PF07721 TPR_4: Tetratricopept 83.3 1.4 3E-05 27.7 2.8 24 467-490 2-25 (26)
391 PF11817 Foie-gras_1: Foie gra 83.2 28 0.00061 35.7 13.9 81 651-731 153-245 (247)
392 KOG4014 Uncharacterized conser 83.1 46 0.001 32.1 15.8 184 497-699 31-233 (248)
393 PF11207 DUF2989: Protein of u 83.0 11 0.00024 37.0 10.0 55 532-587 139-197 (203)
394 PF07720 TPR_3: Tetratricopept 83.0 3.9 8.4E-05 28.1 5.0 32 535-566 2-35 (36)
395 PF07721 TPR_4: Tetratricopept 82.1 2.1 4.5E-05 26.9 3.2 15 676-690 7-21 (26)
396 KOG2114 Vacuolar assembly/sort 82.0 24 0.00052 41.6 13.6 190 507-716 341-534 (933)
397 COG3947 Response regulator con 81.8 25 0.00054 36.4 12.2 59 537-595 282-340 (361)
398 PF10579 Rapsyn_N: Rapsyn N-te 80.7 13 0.00029 30.5 8.0 35 469-503 9-43 (80)
399 PF04190 DUF410: Protein of un 80.7 74 0.0016 32.9 21.7 82 566-665 88-170 (260)
400 PF10255 Paf67: RNA polymerase 80.3 55 0.0012 36.0 15.3 26 638-663 166-191 (404)
401 PF07720 TPR_3: Tetratricopept 79.8 5.4 0.00012 27.4 4.8 30 706-735 3-34 (36)
402 PF00244 14-3-3: 14-3-3 protei 79.2 46 0.001 33.9 13.6 58 537-594 4-63 (236)
403 KOG0276 Vesicle coat complex C 79.1 25 0.00054 39.9 12.1 100 441-562 595-694 (794)
404 PF10516 SHNi-TPR: SHNi-TPR; 79.0 3.5 7.5E-05 28.8 3.7 29 467-495 2-30 (38)
405 KOG2063 Vacuolar assembly/sort 77.7 80 0.0017 38.3 16.7 163 536-698 506-712 (877)
406 PF00244 14-3-3: 14-3-3 protei 76.8 74 0.0016 32.4 14.3 30 469-498 4-33 (236)
407 COG3947 Response regulator con 76.4 8.4 0.00018 39.7 7.1 33 97-129 6-38 (361)
408 PF10373 EST1_DNA_bind: Est1 D 76.1 7.3 0.00016 40.5 7.1 62 587-648 1-62 (278)
409 PF10373 EST1_DNA_bind: Est1 D 75.7 9.6 0.00021 39.6 7.9 62 553-614 1-62 (278)
410 COG5600 Transcription-associat 75.5 6.3 0.00014 42.0 6.1 68 65-134 175-253 (413)
411 PF09670 Cas_Cas02710: CRISPR- 73.7 51 0.0011 36.2 13.1 60 470-529 135-198 (379)
412 KOG4279 Serine/threonine prote 73.6 59 0.0013 38.0 13.3 31 464-494 199-229 (1226)
413 KOG0546 HSP90 co-chaperone CPR 73.3 5.5 0.00012 42.1 5.1 128 574-716 228-355 (372)
414 KOG0546 HSP90 co-chaperone CPR 72.3 4.7 0.0001 42.6 4.3 125 606-745 226-350 (372)
415 smart00299 CLH Clathrin heavy 71.2 82 0.0018 28.7 15.0 35 546-580 19-53 (140)
416 PF10255 Paf67: RNA polymerase 71.0 12 0.00026 41.0 7.3 69 426-494 116-192 (404)
417 PF13041 PPR_2: PPR repeat fam 69.3 22 0.00047 26.0 6.4 27 706-732 5-31 (50)
418 KOG1920 IkappaB kinase complex 68.1 3.2E+02 0.0068 34.2 18.6 108 571-696 942-1052(1265)
419 KOG0686 COP9 signalosome, subu 67.3 31 0.00066 37.4 9.0 95 569-663 151-256 (466)
420 TIGR03504 FimV_Cterm FimV C-te 67.2 9.8 0.00021 27.5 3.8 26 673-698 2-27 (44)
421 KOG4521 Nuclear pore complex, 67.1 2.3E+02 0.005 35.2 16.7 119 612-734 993-1133(1480)
422 PRK12798 chemotaxis protein; R 67.1 2E+02 0.0044 31.6 24.0 206 533-739 111-332 (421)
423 smart00386 HAT HAT (Half-A-TPR 67.0 14 0.00029 23.7 4.4 24 618-641 3-26 (33)
424 KOG2062 26S proteasome regulat 66.7 90 0.002 36.6 12.9 175 449-630 40-238 (929)
425 KOG4279 Serine/threonine prote 66.5 21 0.00046 41.3 8.1 125 532-658 199-343 (1226)
426 PF13041 PPR_2: PPR repeat fam 65.2 29 0.00063 25.3 6.3 29 535-563 4-32 (50)
427 TIGR02710 CRISPR-associated pr 65.1 93 0.002 34.0 12.4 56 436-491 134-196 (380)
428 PRK09687 putative lyase; Provi 64.9 1.8E+02 0.004 30.3 31.2 202 533-748 67-278 (280)
429 PF12854 PPR_1: PPR repeat 64.9 15 0.00033 24.7 4.2 26 636-661 7-32 (34)
430 COG4455 ImpE Protein of avirul 64.7 44 0.00096 33.2 8.8 60 610-669 9-68 (273)
431 PF04097 Nic96: Nup93/Nic96; 64.7 2.3E+02 0.005 33.4 16.7 21 437-457 116-136 (613)
432 smart00386 HAT HAT (Half-A-TPR 64.3 17 0.00037 23.2 4.5 28 480-507 1-28 (33)
433 PF04090 RNA_pol_I_TF: RNA pol 64.1 72 0.0016 31.4 10.3 65 569-633 42-107 (199)
434 COG5536 BET4 Protein prenyltra 64.1 1.9E+02 0.004 30.1 17.7 121 522-642 96-233 (328)
435 PF04097 Nic96: Nup93/Nic96; 63.7 2.6E+02 0.0057 32.9 17.0 86 473-562 265-355 (613)
436 KOG2062 26S proteasome regulat 62.6 3.2E+02 0.007 32.3 21.1 286 442-738 367-681 (929)
437 PF12854 PPR_1: PPR repeat 62.4 15 0.00033 24.6 3.9 23 570-592 9-31 (34)
438 KOG0889 Histone acetyltransfer 62.3 2.9E+02 0.0063 38.7 17.9 105 638-742 2738-2850(3550)
439 KOG0687 26S proteasome regulat 61.8 2.2E+02 0.0048 30.2 13.7 99 534-632 104-211 (393)
440 KOG2034 Vacuolar sorting prote 61.3 3.6E+02 0.0079 32.6 24.2 49 442-493 368-416 (911)
441 smart00299 CLH Clathrin heavy 60.0 1.4E+02 0.003 27.2 15.5 29 478-506 19-47 (140)
442 KOG1920 IkappaB kinase complex 59.9 4.4E+02 0.0095 33.0 19.7 24 434-457 679-702 (1265)
443 PHA02537 M terminase endonucle 59.5 14 0.00031 37.1 4.8 36 704-739 169-213 (230)
444 PF14863 Alkyl_sulf_dimr: Alky 57.9 38 0.00082 31.4 6.9 48 468-515 72-119 (141)
445 KOG0276 Vesicle coat complex C 57.0 1E+02 0.0022 35.3 11.0 45 477-526 648-692 (794)
446 COG5187 RPN7 26S proteasome re 56.8 2.5E+02 0.0054 29.4 12.8 99 534-632 115-222 (412)
447 KOG4151 Myosin assembly protei 56.6 31 0.00067 40.5 7.3 106 608-713 59-170 (748)
448 PF09477 Type_III_YscG: Bacter 56.4 1.4E+02 0.0031 26.2 10.5 80 442-526 16-95 (116)
449 smart00101 14_3_3 14-3-3 homol 55.6 2.5E+02 0.0053 28.8 17.1 56 538-593 5-64 (244)
450 COG5187 RPN7 26S proteasome re 54.5 2.8E+02 0.006 29.0 14.3 96 602-697 115-219 (412)
451 COG4455 ImpE Protein of avirul 54.0 63 0.0014 32.2 7.9 61 643-703 8-68 (273)
452 PF12931 Sec16_C: Sec23-bindin 53.3 54 0.0012 34.4 8.2 141 5-154 11-174 (284)
453 PF04348 LppC: LppC putative l 53.3 4.4 9.6E-05 46.6 0.0 87 39-127 28-124 (536)
454 PF00637 Clathrin: Region in C 52.2 4.9 0.00011 37.1 0.1 82 8-90 13-96 (143)
455 PF14863 Alkyl_sulf_dimr: Alky 52.1 46 0.001 30.9 6.5 48 672-719 72-119 (141)
456 PF09797 NatB_MDM20: N-acetylt 51.8 3.5E+02 0.0075 29.4 25.2 46 582-627 197-242 (365)
457 COG5536 BET4 Protein prenyltra 51.2 3.1E+02 0.0066 28.6 17.3 146 550-695 90-256 (328)
458 PF11846 DUF3366: Domain of un 51.1 74 0.0016 31.1 8.3 49 688-737 129-177 (193)
459 PF06287 DUF1039: Protein of u 50.9 37 0.00081 26.8 4.7 57 13-69 4-61 (66)
460 TIGR02710 CRISPR-associated pr 50.4 2.8E+02 0.0061 30.3 13.0 54 540-593 136-196 (380)
461 cd02682 MIT_AAA_Arch MIT: doma 50.0 1.4E+02 0.0031 24.4 8.4 22 435-456 9-30 (75)
462 PF04762 IKI3: IKI3 family; I 50.0 3.1E+02 0.0068 34.0 15.0 24 434-457 696-719 (928)
463 KOG2758 Translation initiation 49.2 3.5E+02 0.0076 28.7 20.3 227 420-646 83-332 (432)
464 PF01535 PPR: PPR repeat; Int 49.2 26 0.00057 22.1 3.3 18 576-593 8-25 (31)
465 PF01535 PPR: PPR repeat; Int 48.8 28 0.0006 22.0 3.4 28 536-563 2-29 (31)
466 KOG0686 COP9 signalosome, subu 47.8 4.2E+02 0.009 29.2 14.8 95 603-697 151-256 (466)
467 PF04840 Vps16_C: Vps16, C-ter 45.6 4.1E+02 0.0088 28.4 25.7 99 611-726 186-284 (319)
468 cd02680 MIT_calpain7_2 MIT: do 45.3 40 0.00087 27.5 4.4 17 580-596 18-34 (75)
469 KOG1114 Tripeptidyl peptidase 45.0 6.7E+02 0.015 30.8 15.5 51 701-751 1228-1281(1304)
470 KOG3677 RNA polymerase I-assoc 44.9 4E+02 0.0086 29.4 12.6 24 606-629 276-299 (525)
471 PF07219 HemY_N: HemY protein 44.7 68 0.0015 28.1 6.2 48 433-480 60-107 (108)
472 PF13226 DUF4034: Domain of un 44.6 2.3E+02 0.005 29.5 10.9 34 585-618 116-149 (277)
473 KOG0687 26S proteasome regulat 44.6 4.2E+02 0.0091 28.3 13.3 100 567-666 103-211 (393)
474 KOG0292 Vesicle coat complex C 44.2 1.4E+02 0.003 35.8 9.9 33 429-461 988-1020(1202)
475 TIGR00756 PPR pentatricopeptid 44.0 45 0.00098 21.4 4.0 26 537-562 3-28 (35)
476 TIGR00756 PPR pentatricopeptid 44.0 46 0.00099 21.4 4.0 21 642-662 6-26 (35)
477 PF04090 RNA_pol_I_TF: RNA pol 43.6 3.3E+02 0.0073 26.8 12.2 64 534-597 41-105 (199)
478 KOG2066 Vacuolar assembly/sort 43.3 6.5E+02 0.014 30.1 24.5 52 443-494 367-420 (846)
479 TIGR02498 type_III_ssaH type I 43.1 1.2E+02 0.0026 24.8 6.6 68 5-72 9-77 (79)
480 cd02682 MIT_AAA_Arch MIT: doma 42.7 1.3E+02 0.0029 24.5 7.0 29 466-494 6-34 (75)
481 KOG0889 Histone acetyltransfer 42.3 7.2E+02 0.016 35.2 16.8 202 465-668 2735-2957(3550)
482 KOG4521 Nuclear pore complex, 42.2 4.7E+02 0.01 32.7 13.9 54 443-496 896-950 (1480)
483 PF08311 Mad3_BUB1_I: Mad3/BUB 42.0 2.6E+02 0.0057 25.2 14.5 44 688-731 81-126 (126)
484 cd02681 MIT_calpain7_1 MIT: do 41.9 47 0.001 27.2 4.3 17 580-596 18-34 (76)
485 PF04049 APC8: Anaphase promot 41.2 19 0.00042 33.4 2.3 27 65-91 75-101 (142)
486 PF13812 PPR_3: Pentatricopept 40.9 67 0.0014 20.7 4.4 28 468-495 3-30 (34)
487 PHA02537 M terminase endonucle 40.5 30 0.00064 35.0 3.5 17 685-701 193-209 (230)
488 PRK15490 Vi polysaccharide bio 40.0 1.9E+02 0.0041 33.5 10.2 81 442-524 18-98 (578)
489 PF13226 DUF4034: Domain of un 40.0 2.7E+02 0.0058 29.1 10.5 37 550-586 115-151 (277)
490 TIGR03362 VI_chp_7 type VI sec 39.4 4.9E+02 0.011 27.6 19.7 189 535-732 50-278 (301)
491 PF06957 COPI_C: Coatomer (COP 39.4 60 0.0013 35.9 6.0 128 429-556 201-356 (422)
492 COG5116 RPN2 26S proteasome re 39.4 2.5E+02 0.0055 32.0 10.6 41 658-698 195-236 (926)
493 COG5116 RPN2 26S proteasome re 39.2 2.6E+02 0.0056 32.0 10.6 26 468-493 61-86 (926)
494 PF04840 Vps16_C: Vps16, C-ter 38.7 5.2E+02 0.011 27.6 25.5 101 578-695 187-287 (319)
495 COG3014 Uncharacterized protei 38.7 5.3E+02 0.011 27.7 12.4 165 431-609 57-254 (449)
496 KOG1497 COP9 signalosome, subu 38.5 3.2E+02 0.0069 29.0 10.5 58 536-594 105-170 (399)
497 cd02683 MIT_1 MIT: domain cont 38.5 2.2E+02 0.0048 23.3 8.9 23 434-456 8-30 (77)
498 KOG2561 Adaptor protein NUB1, 38.1 2E+02 0.0044 31.7 9.3 26 571-596 270-295 (568)
499 PF11846 DUF3366: Domain of un 37.8 99 0.0021 30.2 6.9 42 591-633 134-175 (193)
500 PF04762 IKI3: IKI3 family; I 37.8 6.7E+02 0.015 31.2 15.3 19 474-492 702-720 (928)
No 1
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.1e-56 Score=479.42 Aligned_cols=625 Identities=43% Similarity=0.678 Sum_probs=438.2
Q ss_pred cCcchHHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCcchHHHHHHHhcCCccchhHHhHHhHHHHHH-----HHhhhcc
Q 004340 96 EIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCMLGAAEEATAVFSEAAALCIQ-----KQYLQNG 170 (760)
Q Consensus 96 ~~p~~a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~~w~af~~Lc~~g~~~~~~~~f~~~~~~~~~-----~~~~~~~ 170 (760)
+|++.|+++||+|.+| +.++...+..++++||..+|++|+||..||.+|+....+.++.....+..+ ..++...
T Consensus 1 ~f~~lAcf~yllg~~y-r~~~~~~~s~~~r~als~~p~~~safs~l~~l~~~~~l~t~l~~v~~l~~q~tl~~nR~~~~~ 79 (638)
T KOG1126|consen 1 EFGDLACFYYLLGIIY-RGARFEHSSQVIRKALSLEPLVWSAFSSLCSLGSDDVLSTCLGSVNILLWQNTLNENRYSGSD 79 (638)
T ss_pred CCcchhhHHHhhchhh-hhhHHHHHHHHhhhhhccCchHHHHHHHHHhhhhHHHHHHhhcccchHHHHHHHHHHHhcccc
Confidence 3678888899999999 999999999999999999999999999999999554455555432222111 1121100
Q ss_pred cccccCCCCCCCCccccCCCCCCCCCChhhhhhhhhcccCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccCC
Q 004340 171 LATQNLYLPNEDRNLVSSKSAGTEDISPRQLKHMQANNLRDIPGNYHGAAVSAAAASQPLNGGPSNASFYNTPSPITTQL 250 (760)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 250 (760)
..... .+.+++..+...+ ..+.+....+...++.+.. +...+...+....++-...++||.-
T Consensus 80 ~a~e~---~ntdS~~~nidss------~ss~~~v~~s~~l~~Ls~~------~~~kp~t~rs~~~~~~~~sslSP~~--- 141 (638)
T KOG1126|consen 80 SATEF---HNTDSNVLNIDSS------VSSPKHVPLSPGLDDLSKQ------AQKKPNTLRSLVRNSADLSSLSPFR--- 141 (638)
T ss_pred ccccc---ccccCcccCcccc------ccccCCCCCCCCccchhhc------ccCCCccchhhhcCCcccCCCCccc---
Confidence 00000 1111111111100 0000000000000000000 0000000000000111133344321
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCCccccccccCCccccccCCcccccccccccCCC-CCCcccccccccCCCCCc
Q 004340 251 SGVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFVDEGKLRKISGRLFSDSG-PRRSTRLAGEAGANANMS 329 (760)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~s~rl~~~~~~~~~~~ 329 (760)
+++.|+ ..++.|.+.|.........+.-.+..+.+..+..+..++-+.+.+++.++..+ .|++.+|-........++
T Consensus 142 s~i~P~--L~~~sP~~~n~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~ss 219 (638)
T KOG1126|consen 142 SGILPP--LTPPSPAVANPTSLISNSLPKICVSSRSRSSRTASVSEGFLLPKSPEARSSSSINRNSESLAADASNSKASS 219 (638)
T ss_pred ccCCCC--CCCCCCCCCCCcccccCCCcccccCCCCcccchhccccccccccChhhhhcccccccchhhccchhcCcccc
Confidence 333343 22223444443333333333334445556667777777777777777666555 677777754432211121
Q ss_pred ccc--ccCCCCcCCCcccCCCCCccccccccccccCCCCCc-cccccCCCCCCCCccccCcCCcccc--cCCCCCCcccc
Q 004340 330 TTT--VAGNGTTNSSKYLGGSKLSSVALRSVTLRKGQSWAN-ENIDEGMRNEPFDDSRANTASTVSS--SFPTSDTRSAV 404 (760)
Q Consensus 330 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 404 (760)
.++ ++.+.... +..+...++......+.+.+....+.. .+.....+.+.+++..+++..+.+. +..+...+.
T Consensus 220 ~t~~~~s~~~~~~-~~~~~~~~s~~~~~~s~t~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~-- 296 (638)
T KOG1126|consen 220 TTPRTISLNVGKP-SSYLKVRKSLKLASESKTSKENNKRARIQKKFVNPRDENFNESRTNDLNTISSTASEGPEESKG-- 296 (638)
T ss_pred cccchhcccccCC-hhhhhhhhhhHhhcCCccccccchhhhhhcccCCCCCccccccCcCCccccccccccCcccccC--
Confidence 111 11110000 111111111111111122111111111 1111122233333333333322211 111111111
Q ss_pred ccCCcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHH
Q 004340 405 QEGTTVPIGGTAMNGSRIMTGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLE 484 (760)
Q Consensus 405 ~~~~~~~~~~~~~~~~k~~~~~~~l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~ 484 (760)
-..+...++...+......++++++.|++++..+.+.++++|+..|.+++...++.+|++.++|++|+++++|++
T Consensus 297 -----~n~~~~~~~~~~l~~~~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~ 371 (638)
T KOG1126|consen 297 -----PNPGELAPQSFGLKDDASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQ 371 (638)
T ss_pred -----CCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 012222333334445588999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 004340 485 AERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN 564 (760)
Q Consensus 485 A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~ 564 (760)
|..+|+.+.+..|...+.+..|.+++||+++..+...+.+.+++.+|+.|+.|+.+|+||..+++++.|+++|++|++++
T Consensus 372 a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld 451 (638)
T KOG1126|consen 372 AERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD 451 (638)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 565 PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGT 644 (760)
Q Consensus 565 p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 644 (760)
|.+.++|..+|+.+....++|+|+.+|++|+..+|+++.+||++|.+|.++++++.|+-+|++|++++|.+..+.+.+|.
T Consensus 452 p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~ 531 (638)
T KOG1126|consen 452 PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGR 531 (638)
T ss_pred CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004340 645 AMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAM 724 (760)
Q Consensus 645 ~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 724 (760)
++.+.|+.++|+.+|++|+.++|.++...+..|.+++.++++++|+..|+++.++.|++..+++.+|++|.++|+.+.|+
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhc
Q 004340 725 LHFGLALDLKPSATDVATIKAAIEKL 750 (760)
Q Consensus 725 ~~~~~al~l~p~~~~a~~~l~~l~~l 750 (760)
..|..|++++|...+ ..++.+++++
T Consensus 612 ~~f~~A~~ldpkg~~-i~~k~~~~~~ 636 (638)
T KOG1126|consen 612 LHFSWALDLDPKGAQ-IQIKAAIERM 636 (638)
T ss_pred HhhHHHhcCCCccch-hhHHHHhhhc
Confidence 999999999999988 6777777665
No 2
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-46 Score=391.51 Aligned_cols=483 Identities=22% Similarity=0.294 Sum_probs=398.2
Q ss_pred HHHHHHHHHhhccchhHHHHHHhhhhcCCCchhhHHHHHHHhhcCCHHHHHHHhccC----CCcchhHHHHHHHHhcCCh
Q 004340 5 LTDCVQNSLRYFMYRNAIFLCERLCAEFPSEVNLQLLATCYLQNNQAYAAYNILKGT----QMALSRYLFAVACYQMDLL 80 (760)
Q Consensus 5 l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~~~llA~~~~~~~~~~~a~~~l~~~----~~~~~~yl~a~c~~~l~~~ 80 (760)
.|.++.++|++++|++|+|||||+.....++.++||+|+|||..|+|+||.+++... .+..||||+|+|.+++++|
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~ 98 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEW 98 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 455556999999999999999999999988999999999999999999999999866 5889999999999999999
Q ss_pred hHHHHhhCCC----C-------------CCC--c---cCcchHHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCcchHHH
Q 004340 81 SEAEAALSPV----N-------------EPS--A---EIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAY 138 (760)
Q Consensus 81 ~ea~~~l~~~----~-------------~~~--~---~~p~~a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~~w~af 138 (760)
++|..+|... + +.. . ..--.+++|+|.|++|-..+++++|.++|++||..|+.|+|||
T Consensus 99 ~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~ 178 (611)
T KOG1173|consen 99 DQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAF 178 (611)
T ss_pred HHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHH
Confidence 9999999843 0 000 1 1223478999999999999999999999999999999999999
Q ss_pred HHHHhcCCccchhHHhHHhHHHHHHHHhhhcccccccCCCCCCCCccccCCCCCCCCCChhhhhhhhhcccCCCCCCCCc
Q 004340 139 EELCMLGAAEEATAVFSEAAALCIQKQYLQNGLATQNLYLPNEDRNLVSSKSAGTEDISPRQLKHMQANNLRDIPGNYHG 218 (760)
Q Consensus 139 ~~Lc~~g~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (760)
+.|..--+- .+.+.|.....+.+.+-..- . -....
T Consensus 179 ~~lvs~~ml-t~~Ee~~ll~~l~~a~~~~e--------------------------d--~e~l~---------------- 213 (611)
T KOG1173|consen 179 EKLVSAHML-TAQEEFELLESLDLAMLTKE--------------------------D--VERLE---------------- 213 (611)
T ss_pred HHHHHHHhc-chhHHHHHHhcccHHhhhhh--------------------------H--HHHHH----------------
Confidence 999764333 23233332211000000000 0 00000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCccccccccCCccccccCCc
Q 004340 219 AAVSAAAASQPLNGGPSNASFYNTPSPITTQLSGVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFVDEGK 298 (760)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (760)
T Consensus 214 -------------------------------------------------------------------------------- 213 (611)
T KOG1173|consen 214 -------------------------------------------------------------------------------- 213 (611)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCCCCcccccccccCCCCCccccccCCCCcCCCcccCCCCCccccccccccccCCCCCccccccCCCCC
Q 004340 299 LRKISGRLFSDSGPRRSTRLAGEAGANANMSTTTVAGNGTTNSSKYLGGSKLSSVALRSVTLRKGQSWANENIDEGMRNE 378 (760)
Q Consensus 299 ~~~~~~~~~~~~~~r~s~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (760)
.+|. .... .+.+ + ....+++
T Consensus 214 ------~lye------------l~~~-k~~n-------------------~----------------------~~~~r~~ 233 (611)
T KOG1173|consen 214 ------ILYE------------LKLC-KNRN-------------------E----------------------ESLTRNE 233 (611)
T ss_pred ------HHHH------------hhhh-hhcc-------------------c----------------------cccccCc
Confidence 0000 0000 0000 0 0000000
Q ss_pred CCCccccCcCCcccccCCCCCCccccccCCcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhcc
Q 004340 379 PFDDSRANTASTVSSSFPTSDTRSAVQEGTTVPIGGTAMNGSRIMTGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKL 458 (760)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~ 458 (760)
+ .+
T Consensus 234 ---------------------------------------------~-------------------------------~s- 236 (611)
T KOG1173|consen 234 ---------------------------------------------D-------------------------------ES- 236 (611)
T ss_pred ---------------------------------------------h-------------------------------hh-
Confidence 0 00
Q ss_pred cccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 004340 459 PHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWC 538 (760)
Q Consensus 459 ~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~ 538 (760)
+..-.++..++...+..++..++|.+..++++..++.+|.+...+.....+++.+|+..+...+.+++++..|..+..|+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~ 316 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWF 316 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchh
Confidence 00011345677778899999999999999999999999999999988888999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004340 539 AMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKF 618 (760)
Q Consensus 539 ~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 618 (760)
.+|..|...|++.+|.++|.++..++|.+..+|...|+.|...|+.|+|+.+|..|-++.|+.......+|.-|...+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHcCCHHHHHH
Q 004340 619 EFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK-------NPLPMYQKANILLSLEKFDEALE 691 (760)
Q Consensus 619 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~-------~~~~~~~la~~~~~~g~~~eA~~ 691 (760)
+.|.++|.+|+.+.|.++.++..+|.+.+..+.|.+|..+|+.++..-+. ....+.++|.++.+++++++|+.
T Consensus 397 kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999954321 33568899999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHh
Q 004340 692 VLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA-AIEK 749 (760)
Q Consensus 692 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~ 749 (760)
++++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.++|++..+..++. +|+.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999987766665 5554
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-38 Score=331.80 Aligned_cols=308 Identities=16% Similarity=0.165 Sum_probs=299.9
Q ss_pred HhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 004340 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYL 522 (760)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~ 522 (760)
-..|+..+|...|.++++.+|.-+.+|..+|-.+..+|+...|+..|+++++++|...+++..+|.+|...+.+++|...
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004340 523 AQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY 602 (760)
Q Consensus 523 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~ 602 (760)
+.+++...|+++.++.++|.+|+.+|..+-|+..|++++++.|.++.+|.++|.++...|+..+|..+|.+++.+.|.++
T Consensus 275 Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha 354 (966)
T KOG4626|consen 275 YLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA 354 (966)
T ss_pred HHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 004340 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLS 682 (760)
Q Consensus 603 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~ 682 (760)
++.++||.+|..+|.+++|...|+++++..|....++.++|.+|..+|++++|+..|++++.+.|..++++.++|..|..
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHhc
Q 004340 683 LEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA-AIEKL 750 (760)
Q Consensus 683 ~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~l 750 (760)
+|+...|+..|.+++.++|..++++.+||.+|...|+..+|+..|+.++.++|+.+++...+. .+.-+
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987655 44433
No 4
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-35 Score=303.79 Aligned_cols=307 Identities=29% Similarity=0.511 Sum_probs=290.0
Q ss_pred ChHHHHHHHhccccc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 004340 447 RCKDALDVYLKLPHK-HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQE 525 (760)
Q Consensus 447 ~~~eAi~~l~~~~~~-~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~ 525 (760)
+.++++.-+...... .|....+-...|.+.+.+.|+++|+..|+.+++.+|.+.+.+..++.+++-..+..+...+++.
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 667788777777666 7888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004340 526 LITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSW 605 (760)
Q Consensus 526 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~ 605 (760)
+..++...+++.+.+|+.|...+++++|+.+|++|++++|....+|..+|+.|+.+.+...|+..|++|++++|.+..+|
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW 401 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW 401 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 004340 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK 685 (760)
Q Consensus 606 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~ 685 (760)
++||+.|..++...=|+-+|++|.+.-|.++.+|..+|.+|.+.++.++|+++|.+++.....+..+++.+|.+|.++++
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCC
Q 004340 686 FDEALEVLEELKEY-------APRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEKLHVP 753 (760)
Q Consensus 686 ~~eA~~~l~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l~~~ 753 (760)
.++|..+|++.++. .|....+...|+.-+.+.+++++|-.+..+++.-++...++..++..+.++..+
T Consensus 482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~p 556 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQAP 556 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 99999999999983 444567777899999999999999999999999988888888888877766553
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9e-33 Score=336.93 Aligned_cols=321 Identities=17% Similarity=0.164 Sum_probs=306.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Q 004340 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (760)
Q Consensus 436 l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~ 515 (760)
+..+..+...|++++|+..++++....|.++.++..+|.++...|++++|+..|+++++..|.+...+..++.++...|+
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 34455667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 516 ~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al 595 (760)
+++|...++++++.+|.+..++..++.++...|++++|+.+++.+....|.....+..+|.++...|++++|+..|++++
T Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 004340 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQ 675 (760)
Q Consensus 596 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~ 675 (760)
...|.. ..+..++.++...|++++|+..++++++..|++..++..+|.++...|++++|+.+|+++++..|+++.++..
T Consensus 731 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 731 KRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred hhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999987 7888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHhcCCCC
Q 004340 676 KANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA-AIEKLHVPD 754 (760)
Q Consensus 676 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~l~~~d 754 (760)
++.++...|+ .+|+.++++++...|+++.++..+|.++...|++++|+.+|+++++.+|.+..+...+. .+.+.|+.+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA 888 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Confidence 9999999999 88999999999999999999999999999999999999999999999999888776555 678889988
Q ss_pred cccc
Q 004340 755 EIED 758 (760)
Q Consensus 755 eaee 758 (760)
+|.+
T Consensus 889 ~A~~ 892 (899)
T TIGR02917 889 EARK 892 (899)
T ss_pred HHHH
Confidence 8865
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-35 Score=307.88 Aligned_cols=284 Identities=15% Similarity=0.131 Sum_probs=274.9
Q ss_pred HHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHH
Q 004340 439 GYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMK 518 (760)
Q Consensus 439 a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~ 518 (760)
|-.+..+|+...||..|+++...+|+-..+|+.+|.+|-+.+.|+.|+..|.+++.+.|.+..++-.++.+|+..|..+-
T Consensus 225 g~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 225 GCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred chHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHH
Confidence 44456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004340 519 LSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD 598 (760)
Q Consensus 519 a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~ 598 (760)
|+..++++++.+|.-+++++++|+.+...|+..+|..+|.+++.+.|..+++..+||.+|..+|.+++|..+|+++++..
T Consensus 305 AI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~ 384 (966)
T KOG4626|consen 305 AIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF 384 (966)
T ss_pred HHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 004340 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (760)
Q Consensus 599 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~ 678 (760)
|....++.+||.+|.++|++++|+.+|++++.+.|..+.++.++|..|..+|+.+.|+..|.+|+.++|..++++.++|.
T Consensus 385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH
Q 004340 679 ILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEK 722 (760)
Q Consensus 679 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 722 (760)
+|...|+..+|+..|+.++++.|+.++++.+++.++.-..++..
T Consensus 465 i~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 465 IYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999998866554433
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-31 Score=326.34 Aligned_cols=518 Identities=18% Similarity=0.119 Sum_probs=430.7
Q ss_pred HHHHHHHHHhhccchhHHHHHHhhhhcCCC-chhhHHHHHHHhhcCCHHHHHHHhccC-----CCcchhHHHHHHHHhcC
Q 004340 5 LTDCVQNSLRYFMYRNAIFLCERLCAEFPS-EVNLQLLATCYLQNNQAYAAYNILKGT-----QMALSRYLFAVACYQMD 78 (760)
Q Consensus 5 l~~~i~~~l~~~~~~~A~flaerl~a~~~~-~~~~~llA~~~~~~~~~~~a~~~l~~~-----~~~~~~yl~a~c~~~l~ 78 (760)
+...-...+.++.|+.|+...++.....|+ .+..+.+|.+|++.|++..|...++.. ......+++|+|.+..|
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 104 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQG 104 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCC
Confidence 444556788999999999999999999997 568899999999999999999999754 45678899999999999
Q ss_pred ChhHHHHhhCCCCCCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCcchHHHHHHHh----cCCccchhHHh
Q 004340 79 LLSEAEAALSPVNEPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCM----LGAAEEATAVF 154 (760)
Q Consensus 79 ~~~ea~~~l~~~~~~~~~~p~~a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~~w~af~~Lc~----~g~~~~~~~~f 154 (760)
++++|+..+... ....-|..+.+++++|.+|...|+.++|...|.+++..+|..-+++..+.. .|...++..+|
T Consensus 105 ~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 182 (899)
T TIGR02917 105 KFQQVLDELPGK--TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALI 182 (899)
T ss_pred CHHHHHHhhccc--ccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999532 112345567799999999999999999999999999999988777766633 34444444444
Q ss_pred HHhHHHHHHHHhhhcccccccCCCCCCCCccccCCCCCCCCCChhhhhhhhhcccCCCCCCCCcccccccccCCCCCCCC
Q 004340 155 SEAAALCIQKQYLQNGLATQNLYLPNEDRNLVSSKSAGTEDISPRQLKHMQANNLRDIPGNYHGAAVSAAAASQPLNGGP 234 (760)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (760)
...... .|.+
T Consensus 183 ~~~~~~---------------------------------------------------~~~~------------------- 192 (899)
T TIGR02917 183 DEVLTA---------------------------------------------------DPGN------------------- 192 (899)
T ss_pred HHHHHh---------------------------------------------------CCCC-------------------
Confidence 421100 0000
Q ss_pred CCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCccccccccCCccccccCCcccccccccccCCCCCC
Q 004340 235 SNASFYNTPSPITTQLSGVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFVDEGKLRKISGRLFSDSGPRR 314 (760)
Q Consensus 235 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 314 (760)
+. .. . ... ......++...
T Consensus 193 ----------~~----------~~--~-------------------~~~-------~~~~~~g~~~~------------- 211 (899)
T TIGR02917 193 ----------VD----------AL--L-------------------LKG-------DLLLSLGNIEL------------- 211 (899)
T ss_pred ----------hH----------HH--H-------------------HHH-------HHHHhcCCHHH-------------
Confidence 00 00 0 000 00000000000
Q ss_pred cccccccccCCCCCccccccCCCCcCCCcccCCCCCccccccccccccCCCCCccccccCCCCCCCCccccCcCCccccc
Q 004340 315 STRLAGEAGANANMSTTTVAGNGTTNSSKYLGGSKLSSVALRSVTLRKGQSWANENIDEGMRNEPFDDSRANTASTVSSS 394 (760)
Q Consensus 315 s~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (760)
....+ ... .
T Consensus 212 A~~~~------------------------------------~~a-~---------------------------------- 220 (899)
T TIGR02917 212 ALAAY------------------------------------RKA-I---------------------------------- 220 (899)
T ss_pred HHHHH------------------------------------HHH-H----------------------------------
Confidence 00000 000 0
Q ss_pred CCCCCCccccccCCcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHH
Q 004340 395 FPTSDTRSAVQEGTTVPIGGTAMNGSRIMTGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGK 474 (760)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~ 474 (760)
+ ..+ . +....+..+..++..|++++|...++++....|..+.+++..|.
T Consensus 221 ---------~----------~~p------~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 269 (899)
T TIGR02917 221 ---------A----------LRP------N------NPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL 269 (899)
T ss_pred ---------h----------hCC------C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 0 000 0 01123456677788999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004340 475 AYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETAL 554 (760)
Q Consensus 475 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 554 (760)
+++..|++++|+..|+++++..|....++..++.++...|++.+|...+.+++...|.++..+..++.++...|++++|+
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 555 KNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (760)
Q Consensus 555 ~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 634 (760)
..+++++..+|.+...+..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..++++++..|.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 429 (899)
T TIGR02917 350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 004340 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIY 714 (760)
Q Consensus 635 ~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~ 714 (760)
.......++..+...|++++|+..+++.+...|.++..+..+|.++...|++++|+..|+++++..|++..+++.+|.++
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 509 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID 509 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHhcCCCCccc
Q 004340 715 KRRNMHEKAMLHFGLALDLKPSATDVATIKA-AIEKLHVPDEIE 757 (760)
Q Consensus 715 ~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~l~~~deae 757 (760)
...|++++|++.|++++...|++..+...+. .+...++.+++.
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999988776555 456677766654
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.1e-31 Score=330.89 Aligned_cols=530 Identities=14% Similarity=0.063 Sum_probs=362.3
Q ss_pred hHHHHHHHHHHhhccchhHHHHHHhhhhcCCC-chhhHHHHHHHhhcCCHHHHHHHhccC-----CCcch----------
Q 004340 3 GILTDCVQNSLRYFMYRNAIFLCERLCAEFPS-EVNLQLLATCYLQNNQAYAAYNILKGT-----QMALS---------- 66 (760)
Q Consensus 3 ~~l~~~i~~~l~~~~~~~A~flaerl~a~~~~-~~~~~llA~~~~~~~~~~~a~~~l~~~-----~~~~~---------- 66 (760)
+.|-+.+.....++.++-|.-.=+||+...|+ ++.++.++.++++.|++..|...+++. .++.+
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence 45677778888899999999999999999997 567899999999999999999888765 34343
Q ss_pred ------hHHHHHHHHhcCChhHHHHhhCCCCCCCccCc-chHHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCcchHHHH
Q 004340 67 ------RYLFAVACYQMDLLSEAEAALSPVNEPSAEIP-NGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYE 139 (760)
Q Consensus 67 ------~yl~a~c~~~l~~~~ea~~~l~~~~~~~~~~p-~~a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~~w~af~ 139 (760)
.+..|++....+++++|+.++.. .....| +...+..+.+.+....++.++|+..|+++++.+|-.-++..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~---~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~ 185 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDK---LFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRN 185 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHH---HccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 26678899999999999998853 222233 33344555666666779999999999999999999888777
Q ss_pred HHHhc----CCccchhHHhHHhHHHHHHHHhhhcccccccCCCCCCCCccccCCCCCCCCCChhhhhhhhhcccCCCCCC
Q 004340 140 ELCML----GAAEEATAVFSEAAALCIQKQYLQNGLATQNLYLPNEDRNLVSSKSAGTEDISPRQLKHMQANNLRDIPGN 215 (760)
Q Consensus 140 ~Lc~~----g~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (760)
.|..+ |...++.++|...... . ... .... ......+.
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~-----~---------------------------~~~-~~aa-~~~~~~l~----- 226 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKS-----P---------------------------AGR-DAAA-QLWYGQIK----- 226 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhC-----C---------------------------Cch-HHHH-HHHHHHHh-----
Confidence 77555 5555566666642110 0 000 0000 00000000
Q ss_pred CCcccccccccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCccccccccCCcccccc
Q 004340 216 YHGAAVSAAAASQPLNGGPSNASFYNTPSPITTQLSGVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFVD 295 (760)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (760)
. ..+.+. .+.. . ..+..
T Consensus 227 ----------------~--------~~~~~~----------------------------------~~~~----l-~~~l~ 243 (1157)
T PRK11447 227 ----------------D--------MPVSDA----------------------------------SVAA----L-QKYLQ 243 (1157)
T ss_pred ----------------c--------cCCChh----------------------------------hHHH----H-HHHHH
Confidence 0 000000 0000 0 00000
Q ss_pred CCcccccccccccCCCCCCcccccccccCCCCCccccccCCCCcCCCcccCCCCCccccccccccccCCCCCccccccCC
Q 004340 296 EGKLRKISGRLFSDSGPRRSTRLAGEAGANANMSTTTVAGNGTTNSSKYLGGSKLSSVALRSVTLRKGQSWANENIDEGM 375 (760)
Q Consensus 296 ~~~~~~~~~~~~~~~~~r~s~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (760)
.|++
T Consensus 244 ----------~~p~------------------------------------------------------------------ 247 (1157)
T PRK11447 244 ----------VFSD------------------------------------------------------------------ 247 (1157)
T ss_pred ----------HCCC------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCCccccCcCCcccccCCCCCCccccccCCcccCCCCCCCcchhhhhHHHHHH--------HHHHHHHHHHHHhcCC
Q 004340 376 RNEPFDDSRANTASTVSSSFPTSDTRSAVQEGTTVPIGGTAMNGSRIMTGASDLLG--------LLRILGEGYRMSCMYR 447 (760)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~--------ll~~l~~a~~~~~~g~ 447 (760)
..........+.. .+.....|..++..|+
T Consensus 248 -------------------------------------------~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~ 284 (1157)
T PRK11447 248 -------------------------------------------GDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ 284 (1157)
T ss_pred -------------------------------------------chHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC
Confidence 0000000000000 0011133667788899
Q ss_pred hHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH--------------HHHHHHHHHHc
Q 004340 448 CKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEG--------------MDIYSTVLYHL 513 (760)
Q Consensus 448 ~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------~~~la~~l~~l 513 (760)
+++|+..|++++..+|+++.++..+|.+|+..|++++|+.+|+++++.+|.+... ....+.++...
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999998875421 12346677888
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------
Q 004340 514 KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGH----------------- 576 (760)
Q Consensus 514 ~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~----------------- 576 (760)
|++++|...+++++..+|.++.+++.+|.++...|++++|+++|+++++++|.+..++..++.
T Consensus 365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999988776654443
Q ss_pred -------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 577 -------------------------EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (760)
Q Consensus 577 -------------------------~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~ 631 (760)
++...|++++|+..|+++++.+|++..+++.+|.+|...|++++|+..++++++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3445789999999999999999999999999999999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----------------------------------------HHhCCCChH
Q 004340 632 SPHSSVIMSYLGTAMHALKRSGEAIEMMEKA----------------------------------------ILADKKNPL 671 (760)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~~eAl~~l~~a----------------------------------------l~~~p~~~~ 671 (760)
.|.++..++.++..+...+++++|+..++++ ++..|.++.
T Consensus 525 ~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~ 604 (1157)
T PRK11447 525 KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTR 604 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCch
Confidence 8888776666555555555555554444321 123455556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHhc
Q 004340 672 PMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA-AIEKL 750 (760)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~l 750 (760)
.+..+|.++...|++++|+..|+++++..|+++.++..++.+|...|++++|++.|+++++..|++..+...++ ++...
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666655544333 33444
Q ss_pred CCCCcc
Q 004340 751 HVPDEI 756 (760)
Q Consensus 751 ~~~dea 756 (760)
++.++|
T Consensus 685 g~~~eA 690 (1157)
T PRK11447 685 GDTAAA 690 (1157)
T ss_pred CCHHHH
Confidence 554444
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.1e-29 Score=296.88 Aligned_cols=262 Identities=17% Similarity=0.183 Sum_probs=213.3
Q ss_pred hcCChHHHHHHHhccccc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Q 004340 444 CMYRCKDALDVYLKLPHK---HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLS 520 (760)
Q Consensus 444 ~~g~~~eAi~~l~~~~~~---~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~ 520 (760)
..++|++|+..|++++.. .|....++..+|.+++.+|++++|+..|+++++.+|.....+..++.++..+|++++|.
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 457889999999988764 47778888999999999999999999999999999988888888888888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 521 YLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600 (760)
Q Consensus 521 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~ 600 (760)
..++++++.+|.++.+|+.+|.++...|++++|+.+|++++.++|++..++..+|.++...|++++|+..|+++++..|.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHH-HHcCChHHHHHHHHHHHHhCCCChHHH
Q 004340 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVI------MSYLGTAM-HALKRSGEAIEMMEKAILADKKNPLPM 673 (760)
Q Consensus 601 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~------~~~la~~~-~~~g~~~eAl~~l~~al~~~p~~~~~~ 673 (760)
++.++..+|.++...|++++|+..|++++.+.|..... +...+.++ ...|++++|+.+++++++++|++..++
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~ 545 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAV 545 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 88888888888888888888888888888887764322 22223333 336788888888888888888887788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Q 004340 674 YQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (760)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 705 (760)
..+|.++...|++++|+.+|++++++.+....
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 88888888888888888888888887765443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.2e-28 Score=303.87 Aligned_cols=311 Identities=16% Similarity=0.132 Sum_probs=269.6
Q ss_pred hHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004340 448 CKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELI 527 (760)
Q Consensus 448 ~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l 527 (760)
..+|...+.+......+.......+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+.++++++
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666655443333334445679999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHH--------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 528 TTDRLAPQ--------------SWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQS 593 (760)
Q Consensus 528 ~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~ 593 (760)
+.+|.+.. ....+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|++
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99997653 1234578899999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHH------------------------------------------HHHcCCHHHHHHHHHHHHHh
Q 004340 594 ALRVDARHYNSWYGLGMV------------------------------------------YLRQEKFEFSEHHFRMAFQI 631 (760)
Q Consensus 594 al~~~p~~~~a~~~la~~------------------------------------------~~~~g~~~~A~~~l~~al~~ 631 (760)
+++.+|.+..++..++.+ +...|++++|+..|+++++.
T Consensus 411 aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL 490 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999987776555444 45679999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH---------------
Q 004340 632 SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEEL--------------- 696 (760)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a--------------- 696 (760)
+|+++.+++.+|.++...|++++|+..|+++++..|.++..++.++..+...+++++|+..++++
T Consensus 491 ~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 491 DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 99999999999999999999999999999999999999998888888887888888877766542
Q ss_pred -------------------------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHhc
Q 004340 697 -------------------------KEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA-AIEKL 750 (760)
Q Consensus 697 -------------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~l 750 (760)
++..|.++.++..+|.++...|++++|+..|+++++++|++.++...+. .+...
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 2346788889999999999999999999999999999999999877665 56777
Q ss_pred CCCCcccc
Q 004340 751 HVPDEIED 758 (760)
Q Consensus 751 ~~~deaee 758 (760)
++.++|.+
T Consensus 651 g~~~eA~~ 658 (1157)
T PRK11447 651 GDLAAARA 658 (1157)
T ss_pred CCHHHHHH
Confidence 88877754
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=1.5e-28 Score=287.20 Aligned_cols=323 Identities=14% Similarity=0.123 Sum_probs=229.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 513 (760)
.....|..++..|+|++|+..|++++...|+ +..+..+|.+|..+|+|++|+..++++++++|++..++..++.++..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 4456788889999999999999999999986 778999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHH------------------------------------------------------------------
Q 004340 514 KEDMKLSYLAQELI------------------------------------------------------------------ 527 (760)
Q Consensus 514 ~~~~~a~~~~~~~l------------------------------------------------------------------ 527 (760)
|++++|...+..+.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 99887764332221
Q ss_pred ----------------------------------Hh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 004340 528 ----------------------------------TT---DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYG 570 (760)
Q Consensus 528 ----------------------------------~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a 570 (760)
+. .|....+|..+|.++...|++++|+..|++++.++|....+
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 367 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS 367 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 11 23344456666666666777777777777777777776667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (760)
Q Consensus 571 ~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 650 (760)
|..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+.+|+++++++|++..++..+|.++...|
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777666777777777777
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH------HHHHHH-HHHHcCCHHHH
Q 004340 651 RSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGV------YALMGK-IYKRRNMHEKA 723 (760)
Q Consensus 651 ~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~------~~~la~-~~~~~g~~~~A 723 (760)
++++|+..|+++++..|.++.++..+|.++...|++++|++.|++++++.|+.... +...+. ++...|++++|
T Consensus 448 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 448 SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 77777777777777777777777777777777777777777777777666643221 112222 22335667777
Q ss_pred HHHHHHHHhcCCChHHHHHHHH-HHHhcCCCCccc
Q 004340 724 MLHFGLALDLKPSATDVATIKA-AIEKLHVPDEIE 757 (760)
Q Consensus 724 ~~~~~~al~l~p~~~~a~~~l~-~l~~l~~~deae 757 (760)
+.+|++++.++|++..++..++ .+...|+.++|.
T Consensus 528 ~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 528 ENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 7777777777666665544333 445566655553
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=2.8e-27 Score=276.25 Aligned_cols=294 Identities=13% Similarity=0.068 Sum_probs=170.0
Q ss_pred HhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 004340 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYL 522 (760)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~ 522 (760)
+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|.+..++..++.++...|+.++|...
T Consensus 87 l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~ 166 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISL 166 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004340 523 AQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNP-RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH 601 (760)
Q Consensus 523 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p-~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~ 601 (760)
+.+++...|..+..+..++ .+...|++++|+..+++++..+| .....+..++.++...|++++|+..|+++++..|++
T Consensus 167 ~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~ 245 (656)
T PRK15174 167 ARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG 245 (656)
T ss_pred HHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 5555555555555554433 24555555555555555555543 222233344555555666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 004340 602 YNSWYGLGMVYLRQEKFEF----SEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~----A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la 677 (760)
..++..+|.++...|++++ |+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6666666666666666553 566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 678 NILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 678 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
.++...|++++|+..|++++...|+....+..+|.++...|++++|+..|+++++.+|++
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 666666666666666666666666555555555566666666666666666666665554
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=1.9e-26 Score=269.17 Aligned_cols=319 Identities=14% Similarity=-0.003 Sum_probs=297.6
Q ss_pred HHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHH
Q 004340 439 GYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMK 518 (760)
Q Consensus 439 a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~ 518 (760)
+..++..|++++|+.++..++...|..+.+++.+|.+....|++++|+..|+++++.+|.+..++..++.++...|+..+
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004340 519 LSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD 598 (760)
Q Consensus 519 a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~ 598 (760)
|...+++++..+|.++.++..+|.++...|++++|+..+++++...|+...++..++ .+...|++++|+..+++++..+
T Consensus 129 Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 129 VADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998887765 4889999999999999999987
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHhCCCChHHH
Q 004340 599 AR-HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGE----AIEMMEKAILADKKNPLPM 673 (760)
Q Consensus 599 p~-~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e----Al~~l~~al~~~p~~~~~~ 673 (760)
|. ....+..++.++...|++++|+..|++++..+|+++.++..+|.++...|++++ |+..|+++++.+|+++.++
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~ 287 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIV 287 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 63 344456678899999999999999999999999999999999999999999986 8999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH-HHHHhcCC
Q 004340 674 YQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIK-AAIEKLHV 752 (760)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l-~~l~~l~~ 752 (760)
..+|.++...|++++|+..+++++.+.|+++.++..+|.++...|++++|+..|++++..+|+........ ..+...|+
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999987655433 36788888
Q ss_pred CCcccc
Q 004340 753 PDEIED 758 (760)
Q Consensus 753 ~deaee 758 (760)
.++|.+
T Consensus 368 ~deA~~ 373 (656)
T PRK15174 368 TSEAES 373 (656)
T ss_pred HHHHHH
Confidence 887754
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=6e-25 Score=262.15 Aligned_cols=303 Identities=11% Similarity=-0.020 Sum_probs=225.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccccCCC---CHHHHHHHHHHHHHccC-------------------------HHH---
Q 004340 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYN---TGWVLSQVGKAYFEVVD-------------------------YLE--- 484 (760)
Q Consensus 436 l~~a~~~~~~g~~~eAi~~l~~~~~~~p~---~~~~l~~la~~~~~~g~-------------------------~~~--- 484 (760)
..-++.++..|++++|..+|+.+.....+ +..+...++.+|...+. +.+
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD 459 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh
Confidence 44566677888888888888887664222 12233366666655533 222
Q ss_pred HHHHHHHHHHHCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004340 485 AERAFTLARRASPY--SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQ 562 (760)
Q Consensus 485 A~~~~~~al~~~p~--~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~ 562 (760)
+...+.+++...|. +..++..++.++.. ++..+|...+.+++...|.+. ....+|..+...|++++|+..|+++..
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 23334444445566 77788888888776 677778887888888887643 355566666788888888888888766
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 563 LNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYL 642 (760)
Q Consensus 563 ~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 642 (760)
..|. ...+..+|.++...|++++|+.+|+++++.+|.....+..++......|++++|+..|+++++.+|+ ..++..+
T Consensus 538 ~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~L 615 (987)
T PRK09782 538 HDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVAR 615 (987)
T ss_pred cCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 6554 3456777888888888888888888888888877777776666666778888888888888888885 7788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH
Q 004340 643 GTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEK 722 (760)
Q Consensus 643 a~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 722 (760)
|.++.+.|++++|+..|++++.++|+++.++..+|.++...|++++|+..|++++++.|+++.+++.+|.++..+|++++
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCChHHHHH
Q 004340 723 AMLHFGLALDLKPSATDVAT 742 (760)
Q Consensus 723 A~~~~~~al~l~p~~~~a~~ 742 (760)
|+.+|+++++++|+...+..
T Consensus 696 A~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 696 TQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HHHHHHHHHhcCCCCchhhh
Confidence 88888888888887765543
No 15
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-23 Score=215.26 Aligned_cols=319 Identities=18% Similarity=0.222 Sum_probs=291.8
Q ss_pred HHHHHHhcCChHHHH--HHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Q 004340 438 EGYRMSCMYRCKDAL--DVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi--~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~ 515 (760)
+++.....++...|. .++-.....-|++...+..+|.+++..|++++|+..|+++.-++|+...++..|+.++...|+
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccC
Confidence 444445555555554 445556677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 516 ~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al 595 (760)
.++...+...++..+.....-|+.-+...+..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.|.
T Consensus 282 ~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHH-cCChHHHHHHHHHHHHhCCCChHHH
Q 004340 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLG-TAMHA-LKRSGEAIEMMEKAILADKKNPLPM 673 (760)
Q Consensus 596 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la-~~~~~-~g~~~eAl~~l~~al~~~p~~~~~~ 673 (760)
.+.|.+.+.|.+|..+|...|++.+|....+.++...|.++..+..+| .++.. ----++|.+++++++.+.|....+.
T Consensus 362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV 441 (564)
T KOG1174|consen 362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAV 441 (564)
T ss_pred hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHH
Confidence 999999999999999999999999999999999999999999998886 44443 3346899999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCC
Q 004340 674 YQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEKLHVP 753 (760)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l~~~ 753 (760)
..+|.++...|++++++.++++.+...|+ ...+..||+++...+.+++|.++|..|+.++|++.....-+..+++-..+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCC
Confidence 99999999999999999999999999886 67899999999999999999999999999999999888888888887776
Q ss_pred Cccc
Q 004340 754 DEIE 757 (760)
Q Consensus 754 deae 757 (760)
.+|.
T Consensus 521 ~DAT 524 (564)
T KOG1174|consen 521 SDAT 524 (564)
T ss_pred CCcc
Confidence 5553
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.3e-24 Score=235.55 Aligned_cols=268 Identities=13% Similarity=0.111 Sum_probs=251.6
Q ss_pred HHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHH
Q 004340 438 EGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDM 517 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~ 517 (760)
-|..++.+++|++|.++|+.+.+..|-...-.-....+++.+.+--+---+.+..+..+|+.++.|..+|.|+..+++.+
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~ 438 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHD 438 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHH
Confidence 44555888999999999999999988765555556667777777666666677889999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 518 KLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597 (760)
Q Consensus 518 ~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~ 597 (760)
.|+..+++++++||..+.+|..+|.-+....++|.|..+|++|+..+|.+..+|+.+|.+|.++++++.|.-.|++|+++
T Consensus 439 ~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 439 TAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred HHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 004340 598 DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (760)
Q Consensus 598 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la 677 (760)
+|.+......+|.++.+.|+.++|+.+|++|+.++|.++...+..|.+++..+++++|+..+++.-++.|++..+++.+|
T Consensus 519 NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llg 598 (638)
T KOG1126|consen 519 NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLG 598 (638)
T ss_pred CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHH
Q 004340 678 NILLSLEKFDEALEVLEELKEYAPRESG 705 (760)
Q Consensus 678 ~~~~~~g~~~eA~~~l~~al~~~p~~~~ 705 (760)
.+|.+.|+.+.|+..|--|.+++|.-..
T Consensus 599 ki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 599 KIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHccchHHHHhhHHHhcCCCccch
Confidence 9999999999999999999999997544
No 17
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-24 Score=226.65 Aligned_cols=316 Identities=16% Similarity=0.186 Sum_probs=264.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 004340 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH 512 (760)
Q Consensus 433 l~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 512 (760)
...-.+|..++..|+|++||.+|..+++..|+.+..|.+++-||...|+|++.++...++++++|+...++...+.++..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 34446899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHH------------------HHHHHHHh--------------CC-----------------------------
Q 004340 513 LKEDMKLSY------------------LAQELITT--------------DR----------------------------- 531 (760)
Q Consensus 513 l~~~~~a~~------------------~~~~~l~~--------------~p----------------------------- 531 (760)
+|++.++.. ++++.++. .|
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 988776542 11111100 00
Q ss_pred ---------------------------------------CC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004340 532 ---------------------------------------LA---------PQSWCAMGNCYSLQKDHETALKNFQRAVQL 563 (760)
Q Consensus 532 ---------------------------------------~~---------~~~~~~la~~~~~~g~~~~A~~~~~kal~~ 563 (760)
.+ ++++...|..++..|++-.|...|++++.+
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 00 245666777788889999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 564 NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLG 643 (760)
Q Consensus 564 ~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 643 (760)
+|.+...|..+|.+|....+.++-...|.+|..++|.++.+|+..|++++-++++++|+.-|++++.++|.+...+..++
T Consensus 356 ~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~ 435 (606)
T KOG0547|consen 356 DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLC 435 (606)
T ss_pred CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence 99888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHH-H
Q 004340 644 TAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR------ESGVYALMGKIYK-R 716 (760)
Q Consensus 644 ~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~------~~~~~~~la~~~~-~ 716 (760)
.++++++++++++..|+.+.+..|..++++...|.++..+++|++|++.|++++++.|. ++..+...|.+.. .
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 99999999999999999999999999999999999999999999999999999998887 4433333333322 3
Q ss_pred cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004340 717 RNMHEKAMLHFGLALDLKPSATDVATIKAAIE 748 (760)
Q Consensus 717 ~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~ 748 (760)
.+++..|+..+++|+++||....++.-++.++
T Consensus 516 k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 516 KEDINQAENLLRKAIELDPKCEQAYETLAQFE 547 (606)
T ss_pred hhhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 47888888888888888888888777666543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4e-23 Score=228.56 Aligned_cols=300 Identities=16% Similarity=0.112 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC----HHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS----LEGMDIYS 507 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 507 (760)
+...+..|..+...|++++|+..|.+++..+|++..++..+|.++...|++++|+.++++++...+.. ...+..++
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44555667778889999999999999999999999999999999999999999999999998854332 25678889
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcC
Q 004340 508 TVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA-----YGHTLCGHEYVALE 582 (760)
Q Consensus 508 ~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~-----~a~~~la~~~~~~g 582 (760)
.++...|++++|..++.++++.+|.+..++..++.++...|++++|++.++++++..|... ..+..+|.++...|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999998899999999999999999999999999998877653 34667889999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Q 004340 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS-SVIMSYLGTAMHALKRSGEAIEMMEK 661 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eAl~~l~~ 661 (760)
++++|+.+|+++++.+|....+++.+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++|+..+++
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988876 45678889999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Q 004340 662 AILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKR--RNMHEKAMLHFGLALD 732 (760)
Q Consensus 662 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 732 (760)
+++..|+... +..++.++...|++++|+..++++++..|++..+...++..+.. .|+.++|+..+++.+.
T Consensus 275 ~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 275 ALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 9999987654 48899999999999999999999999999877665555544432 4588888887776664
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=6.4e-22 Score=236.34 Aligned_cols=286 Identities=13% Similarity=0.073 Sum_probs=265.2
Q ss_pred HHHHHHHhcccccCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004340 449 KDALDVYLKLPHKHYN--TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQEL 526 (760)
Q Consensus 449 ~eAi~~l~~~~~~~p~--~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~ 526 (760)
..+...+.+++...|. .+.+++.+|.++.. +++.+|+..|.+++...|+.. ....++.++...|++++|...++++
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka 535 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKI 535 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455666677777788 99999999999998 899999999999999999754 3666777788999999999999998
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004340 527 ITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWY 606 (760)
Q Consensus 527 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~ 606 (760)
+...|. ...++.+|.++...|++++|+.+|+++++.+|.....+..++......|++++|+..|+++++.+|+ ..++.
T Consensus 536 ~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~ 613 (987)
T PRK09782 536 SLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYV 613 (987)
T ss_pred hccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHH
Confidence 777555 4568899999999999999999999999999998888887777777889999999999999999997 99999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 004340 607 GLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKF 686 (760)
Q Consensus 607 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 686 (760)
.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++..|+++.+++++|.++...|++
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004340 687 DEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSAT 738 (760)
Q Consensus 687 ~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 738 (760)
++|+..|++++++.|+.+.+....|.+.....+++.|.+.+.++..++|+..
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999999999999999999999999999999999999999999999887
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.6e-22 Score=224.50 Aligned_cols=282 Identities=15% Similarity=0.127 Sum_probs=216.2
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 004340 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRA-----SPY-----SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA 533 (760)
Q Consensus 464 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~ 533 (760)
--+.++..+|-.++..|++.+|...|..++.. +++ +....+.++.++..+++...|...|..++...|..
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 34677888888888888888888888888776 111 12246777888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA--RHYNSWYGLGMV 611 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p--~~~~a~~~la~~ 611 (760)
.+++..+|.+....+...+|...+..++..+..++.++..+|..|+...++..|.+-|+..++... .+..+...||.+
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 888888887777778888888888888888888888888888888888888888887777665422 345666777776
Q ss_pred HHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 004340 612 YLR------------QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI 679 (760)
Q Consensus 612 ~~~------------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~ 679 (760)
++. .+.+++|++.|.++++.+|.+..+-+.+|.++...|++.+|+.+|.++.+-..+...+|.++|+|
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHC 689 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHH
Confidence 653 24567788888888888888888888888888888888888888888877776777788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004340 680 LLSLEKFDEALEVLEELKEYA--PRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 680 ~~~~g~~~eA~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
|+.+|+|..|++.|+.++... .++..+...||++++..|.+.+|.+++..|+.+.|.++.+...++
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 888888888888888887753 246778888888888888888888888888888888876655444
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=9.7e-23 Score=225.51 Aligned_cols=281 Identities=15% Similarity=0.073 Sum_probs=255.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 004340 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA----PQSWCAMG 541 (760)
Q Consensus 466 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~----~~~~~~la 541 (760)
....+.+|..+...|++++|+..|+++++.+|.+..++..++.++...|++.+|...+++++...+.. ...+..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999998864433 35788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcC
Q 004340 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY-----NSWYGLGMVYLRQE 616 (760)
Q Consensus 542 ~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g 616 (760)
.+|...|++++|+.+|+++++.+|....++..++.++...|++++|+..++++++..|... ..+..+|.++...|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999887653 35678899999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 617 KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN-PLPMYQKANILLSLEKFDEALEVLEE 695 (760)
Q Consensus 617 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~ 695 (760)
++++|+.+|+++++..|+...++..+|.++...|++++|++++++++...|.+ ..++..++.+|...|++++|+..+++
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876 45678899999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004340 696 LKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAI 747 (760)
Q Consensus 696 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l 747 (760)
+++..|+.. .+..++.++...|++++|+..|+++++..|++.....+....
T Consensus 275 ~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 275 ALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred HHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 999999765 448999999999999999999999999999998766555543
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=2.7e-22 Score=239.16 Aligned_cols=308 Identities=10% Similarity=-0.028 Sum_probs=160.7
Q ss_pred HHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Q 004340 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (760)
Q Consensus 437 ~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~ 516 (760)
..|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|.+.. +..++.++...|+.
T Consensus 54 ~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~ 132 (765)
T PRK10049 54 AVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRH 132 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCH
Confidence 33444556666666666666666666666666666666666666666666666666666666666 66666666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH----------------------------------------------
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDH---------------------------------------------- 550 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---------------------------------------------- 550 (760)
.+|...++++++.+|.++.++..+|.++...+..
T Consensus 133 ~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~a 212 (765)
T PRK10049 133 WDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIA 212 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHH
Confidence 6666666666666666666666555555444443
Q ss_pred -----------------------------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 004340 551 -----------------------------------------ETALKNFQRAVQLNPRF-AYGHTLCGHEYVALEDFENGI 588 (760)
Q Consensus 551 -----------------------------------------~~A~~~~~kal~~~p~~-~~a~~~la~~~~~~g~~e~A~ 588 (760)
++|+..|+++++..+.. ..+...+|.+|...|++++|+
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 33333333333332111 111222344444444444444
Q ss_pred HHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHc
Q 004340 589 RSYQSALRVDARH----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH---------------SSVIMSYLGTAMHAL 649 (760)
Q Consensus 589 ~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~---------------~~~~~~~la~~~~~~ 649 (760)
..|+++++.+|.+ ...+..++.++...|++++|+.+++++....|. ...++..+|.++...
T Consensus 293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 4444444443332 223333444444444444444444444444331 112334445555555
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 650 KRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGL 729 (760)
Q Consensus 650 g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 729 (760)
|++++|++.+++++...|.++.++..+|.++...|++++|++.+++++.+.|++..+++.+|.++...|++++|...+++
T Consensus 373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhcCCChHHHHHHHH
Q 004340 730 ALDLKPSATDVATIKA 745 (760)
Q Consensus 730 al~l~p~~~~a~~~l~ 745 (760)
+++..|+++.+..+..
T Consensus 453 ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 453 VVAREPQDPGVQRLAR 468 (765)
T ss_pred HHHhCCCCHHHHHHHH
Confidence 5555555554433333
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.6e-22 Score=226.27 Aligned_cols=299 Identities=17% Similarity=0.151 Sum_probs=263.2
Q ss_pred HHHHHHhcCChHHHHHHHhccccc-----CCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 004340 438 EGYRMSCMYRCKDALDVYLKLPHK-----HYN-----TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYS 507 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~~~-----~p~-----~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 507 (760)
.|..++..|.+.+|...|.++... +++ +....+++|+++-..++++.|.+.|..++...|...+++..++
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 355567889999999999887544 222 2235899999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-----
Q 004340 508 TVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN--PRFAYGHTLCGHEYVA----- 580 (760)
Q Consensus 508 ~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~--p~~~~a~~~la~~~~~----- 580 (760)
......+...++..++..++..+..+|.+|-.+|.+|....++..|.+-|...++.- ..++++...||.++..
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 777788889999999999999999999999999999999999999999888877642 2467888889997764
Q ss_pred -------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 004340 581 -------LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSG 653 (760)
Q Consensus 581 -------~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (760)
.+.+++|++.|.++++.+|.+..+-.++|.++...|++.+|..+|.++.+--.+...+|.++|.||..+|+|.
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999888788899999999999999999
Q ss_pred HHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-------------
Q 004340 654 EAIEMMEKAILAD--KKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN------------- 718 (760)
Q Consensus 654 eAl~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g------------- 718 (760)
.|++.|+.+++.. .++..++..||.+++..|.+.+|.+++..++...|.++.+.+++|.+..+.+
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ee 777 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEE 777 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHH
Confidence 9999999999874 3568899999999999999999999999999999999999999998887653
Q ss_pred ------CHHHHHHHHHHHHhcCCC
Q 004340 719 ------MHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 719 ------~~~~A~~~~~~al~l~p~ 736 (760)
..+.|.++|...-...+.
T Consensus 778 v~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 778 VLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 466777777777665554
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=1.8e-22 Score=240.54 Aligned_cols=314 Identities=12% Similarity=0.020 Sum_probs=247.7
Q ss_pred HhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 004340 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYL 522 (760)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~ 522 (760)
...|+.++|++.+.++....|....++..+|.++...|++++|+.+|+++++.+|.+..++..++.++...++..+|...
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56789999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH--------------
Q 004340 523 AQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGI-------------- 588 (760)
Q Consensus 523 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~-------------- 588 (760)
++++++.+|.++. +..+|.++...|++++|+..++++++..|++..++..+|.++...+..++|+
T Consensus 106 l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~ 184 (765)
T PRK10049 106 AKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKR 184 (765)
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence 9999999999999 9999999999999999999999999999999888777777665544444333
Q ss_pred --------------------------------HHHHHHH-----------------------------------------
Q 004340 589 --------------------------------RSYQSAL----------------------------------------- 595 (760)
Q Consensus 589 --------------------------------~~~~~al----------------------------------------- 595 (760)
..++.++
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 2222333
Q ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-
Q 004340 596 RVDARH-YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS----SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN- 669 (760)
Q Consensus 596 ~~~p~~-~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~- 669 (760)
+..+.. ..+...+|.+|...|++++|+.+|+++++.+|.+ ......++.++...|++++|+.+++++....|..
T Consensus 265 ~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~ 344 (765)
T PRK10049 265 AEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFL 344 (765)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceE
Confidence 221110 1112224556666677777777777666665544 2345556666677777777777777777766521
Q ss_pred --------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 670 --------------PLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 670 --------------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
..++..+|.++...|++++|++.+++++...|+++.++..+|.++...|++++|+..+++++.++|
T Consensus 345 ~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 345 RLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred eecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 235667888888888888888888888888888888888899999889999999999999999889
Q ss_pred ChHHHHHHHH-HHHhcCCCCccc
Q 004340 736 SATDVATIKA-AIEKLHVPDEIE 757 (760)
Q Consensus 736 ~~~~a~~~l~-~l~~l~~~deae 757 (760)
++..+...++ ....++++++|+
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHH
Confidence 8877666555 345666666654
No 25
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.91 E-value=1.1e-21 Score=196.06 Aligned_cols=319 Identities=15% Similarity=0.132 Sum_probs=287.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 004340 431 GLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVL 510 (760)
Q Consensus 431 ~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 510 (760)
++-..+..|..++..|++.+|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+....+.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 46677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 511 YHLKEDMKLSYLAQELITTDRLAP---QS------------WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575 (760)
Q Consensus 511 ~~l~~~~~a~~~~~~~l~~~p~~~---~~------------~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la 575 (760)
...|+.++|..-+..+++.+|.+. ++ +......++..|++..|+.+....+++.|-++..+...+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 999999999999999999999543 22 223344567789999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------HH
Q 004340 576 HEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSY------------LG 643 (760)
Q Consensus 576 ~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~------------la 643 (760)
.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+.-..+-. -+
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998554322 24
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Q 004340 644 TAMHALKRSGEAIEMMEKAILADKKNPLPM----YQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNM 719 (760)
Q Consensus 644 ~~~~~~g~~~eAl~~l~~al~~~p~~~~~~----~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 719 (760)
....+.++|.++++..++.++.+|..+.+. ..+..|+..-|++.+|+..+.++++++|++..++...|.+|.....
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 455678899999999999999999865443 3478889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 004340 720 HEKAMLHFGLALDLKPSATDVATIKAAIEK 749 (760)
Q Consensus 720 ~~~A~~~~~~al~l~p~~~~a~~~l~~l~~ 749 (760)
|+.|+..|++|.++++++..+..-+..-.+
T Consensus 357 YD~AI~dye~A~e~n~sn~~~reGle~Akr 386 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNESNTRAREGLERAKR 386 (504)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 999999999999999999988776554433
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.5e-22 Score=207.42 Aligned_cols=269 Identities=20% Similarity=0.205 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 004340 468 VLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQ 547 (760)
Q Consensus 468 ~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~ 547 (760)
.+-..|.-++..|+|++|+++|.+++++.|+.+..+..++.||..+|++.+.++...++++++|+...+++..+..+...
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH------------------HHHHHh--------------CCC-----------------------------
Q 004340 548 KDHETALKNF------------------QRAVQL--------------NPR----------------------------- 566 (760)
Q Consensus 548 g~~~~A~~~~------------------~kal~~--------------~p~----------------------------- 566 (760)
|++++|+.-. ++.+.. .|.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 9998876532 222210 000
Q ss_pred ---------------------------------------C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004340 567 ---------------------------------------F---------AYGHTLCGHEYVALEDFENGIRSYQSALRVD 598 (760)
Q Consensus 567 ---------------------------------------~---------~~a~~~la~~~~~~g~~e~A~~~~~~al~~~ 598 (760)
+ +.++...|..++..|++-.|...|+++|.++
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 1 2334556777788899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 004340 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (760)
Q Consensus 599 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~ 678 (760)
|.....|..+|.+|....+.++-...|.+|..++|.++.+|+..|.+++-++++++|+.-|++++.++|++..++..++.
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~ 436 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC 436 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 679 ILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 679 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
+.+++++++++...|+.+++..|..++++...|.++..+++|++|++.|++++++.|.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.6e-21 Score=198.95 Aligned_cols=313 Identities=13% Similarity=0.123 Sum_probs=231.5
Q ss_pred HHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHccC
Q 004340 438 EGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP--YSLEGMDIYSTVLYHLKE 515 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~l~~ 515 (760)
.|..+-..|....|++.|..+....|-.-.+|..++.+... ++........-| .+.-.-..+..++..+..
T Consensus 170 ~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 170 YGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred HHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 44455556666666666666655555554444444433211 111111111111 111112223334444444
Q ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----------------------------
Q 004340 516 DMKLSYLAQELITT-DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR---------------------------- 566 (760)
Q Consensus 516 ~~~a~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~---------------------------- 566 (760)
.+++..-.+..+.. .|.....-...|.+.....|+++|+..|+...+.+|-
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 55555555555554 5555555555666666666666666666666655553
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004340 567 ------FAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMS 640 (760)
Q Consensus 567 ------~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 640 (760)
.++....+|.-|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|++|++++|.+..+|+
T Consensus 323 ~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWY 402 (559)
T KOG1155|consen 323 SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWY 402 (559)
T ss_pred HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHh
Confidence 33333445777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Q 004340 641 YLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMH 720 (760)
Q Consensus 641 ~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 720 (760)
.+|.+|.-++-..=|+-+|++|++..|.+...|..+|.||.++++.++|+++|.+++.....+..++..||.+|.++++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHh-------cCCChHHHHHHHHH-HHhcCCCCccc
Q 004340 721 EKAMLHFGLALD-------LKPSATDVATIKAA-IEKLHVPDEIE 757 (760)
Q Consensus 721 ~~A~~~~~~al~-------l~p~~~~a~~~l~~-l~~l~~~deae 757 (760)
.+|..+|++.++ .+|+-..+...++. ..+.+++++|.
T Consensus 483 ~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 483 NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 999999999998 45555555555553 46777777764
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=2.3e-20 Score=208.10 Aligned_cols=328 Identities=15% Similarity=0.132 Sum_probs=258.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 511 (760)
+...|++|..++..|++++|+.++.+++..+|.++.+|+.+|.+|.++|+.++|...+-.|-.++|.+.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHH
Q 004340 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA-----YGHTLCGHEYVALEDFEN 586 (760)
Q Consensus 512 ~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~-----~a~~~la~~~~~~g~~e~ 586 (760)
.+|...+|..++.++++.+|.+....+..+.+|.+.|++..|...|.+++...|... ..-...++.+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999998322 223345788888888899
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------------------C
Q 004340 587 GIRSYQSALRVD--ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI--SPH---------------------------S 635 (760)
Q Consensus 587 A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--~p~---------------------------~ 635 (760)
|++.++.++... ....+-+..++.++++...++.|.......... .++ -
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 999999999832 223445677888889999999988877665541 000 0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Q 004340 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILADK-KNPLPMYQKANILLSLEKFDEALEVLEELKEYAP-RESGVYALMGKI 713 (760)
Q Consensus 636 ~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~~~~la~~ 713 (760)
..++..++.+..+.++..+++..+..--...+ +++..++.++.+|...|+|.+|+.+|..+....+ .+..+|+.+|.|
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 11133334444444444444444332222223 3456777788888888888888888877776554 345678888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHhcCCCCccccc
Q 004340 714 YKRRNMHEKAMLHFGLALDLKPSATDVATIKA-AIEKLHVPDEIEDN 759 (760)
Q Consensus 714 ~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~l~~~deaee~ 759 (760)
|..+|.+++|+++|++++.+.|++.++..-++ .+..+|+.|+|.+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 88888888888888888888888887777555 45677777776553
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.88 E-value=3.8e-22 Score=210.36 Aligned_cols=262 Identities=18% Similarity=0.198 Sum_probs=124.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 004340 470 SQVGKAYFEVVDYLEAERAFTLARR-A-SPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQ 547 (760)
Q Consensus 470 ~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~ 547 (760)
+.+|.+++..|++++|++.+.+.+. . .|.+...|..++.+.+.+++++.|...+++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 3669999999999999999966554 4 478888888899999999999999999999999998888888888888 799
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 548 KDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD--ARHYNSWYGLGMVYLRQEKFEFSEHHF 625 (760)
Q Consensus 548 g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~A~~~l 625 (760)
+++++|+++++++.+..+ ++..+.....++...++++++...++++.... +.++..|..+|.++.+.|++++|+..|
T Consensus 91 ~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999887664 46667778888999999999999999987655 677889999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Q 004340 626 RMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (760)
Q Consensus 626 ~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 705 (760)
+++++.+|++..+...++.++...|+++++.+.+....+..|.++..+..+|.++..+|++++|+.+|++++...|+++.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 706 VYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 706 ~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
++..+|.++...|+.++|..++++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999988763
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=4.7e-18 Score=199.53 Aligned_cols=309 Identities=13% Similarity=-0.025 Sum_probs=246.2
Q ss_pred HHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHc-
Q 004340 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTV--LYHL- 513 (760)
Q Consensus 437 ~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--l~~l- 513 (760)
..++.+...++..+|+..|+++++.+|++..++..+..++...|-...|.+...+--.........+.....+ ....
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 3466666678888899999999999999999999999999999999999977665332221111111111111 1111
Q ss_pred --------cC---HHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 004340 514 --------KE---DMKLSYLAQELITTDRLAP-------QSWCAMGNCYSLQKDHETALKNFQRAVQLN-PRFAYGHTLC 574 (760)
Q Consensus 514 --------~~---~~~a~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~kal~~~-p~~~~a~~~l 574 (760)
.+ .+.+...++.++...+..| .+....-.++...+++.++++.|+.+.... +--.++....
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 11 2345556667776444333 233345556778899999999999987654 3346788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------
Q 004340 575 GHEYVALEDFENGIRSYQSALRVDA------RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP--------------- 633 (760)
Q Consensus 575 a~~~~~~g~~e~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p--------------- 633 (760)
|..|+..++.++|+.+|+.++.-.+ ........|...|...+++++|..++++..+..|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 9999999999999999999988653 2344457888899999999999999999988544
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 004340 634 HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKI 713 (760)
Q Consensus 634 ~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~ 713 (760)
+...+...++.++...|++.+|++.+++.+...|.++.++..+|.++...|.+.+|+..++.+..++|++..+...+|.+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 23556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004340 714 YKRRNMHEKAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 714 ~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
+..+|++++|....+.+++..|++.....+..
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 99999999999999999999999997765443
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.87 E-value=3.8e-19 Score=197.43 Aligned_cols=302 Identities=9% Similarity=-0.037 Sum_probs=259.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH-HHHHHHHHH
Q 004340 431 GLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL-EGMDIYSTV 509 (760)
Q Consensus 431 ~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~ 509 (760)
.....+.+|...+..|+++.|.+.+.+..+..|.....+...|.++..+|+++.|..+|.++.+..|... .....++.+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3456688999999999999999999999999998888889999999999999999999999999999875 456667999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHH
Q 004340 510 LYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHT----LCGHEYVALEDFE 585 (760)
Q Consensus 510 l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~----~la~~~~~~g~~e 585 (760)
+...+++++|...++++.+..|+++.++..++.++...|++++|++.+.+..+........+. .....+...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999987554443321 2222224455566
Q ss_pred HHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCChHHHHHHH
Q 004340 586 NGIRSYQSALRVDA----RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIM--SYLGTAMHALKRSGEAIEMM 659 (760)
Q Consensus 586 ~A~~~~~~al~~~p----~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~--~~la~~~~~~g~~~eAl~~l 659 (760)
++...+.++.+..| ++...+..++..+...|++++|+..++++++..|++.... ..........++.+.+++.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 66778888888777 5899999999999999999999999999999999987532 22333344468889999999
Q ss_pred HHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 660 EKAILADKKNP--LPMYQKANILLSLEKFDEALEVLE--ELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 660 ~~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~l~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
+++++..|+++ .....+|+++++.|++++|.++|+ .+++..|+.. .+..+|.++.+.|+.++|.++|++++..
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999 888999999999999999999999 5777888654 4669999999999999999999998763
No 32
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.2e-20 Score=193.90 Aligned_cols=312 Identities=19% Similarity=0.189 Sum_probs=239.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Q 004340 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (760)
Q Consensus 437 ~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~ 516 (760)
.+|..++..|+|+.|+.+|..++..+|.+...+.....+|..+|+|++|++.-.+.+++.|+-+.+|...|..+.-+|++
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 56777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH----------------------------------------------------
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCY---------------------------------------------------- 544 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~---------------------------------------------------- 544 (760)
++|+..|.+.++.+|++......++.++
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 8888888887777777665554444443
Q ss_pred --------------------------------------------------------------------HhcCCHHHHHHH
Q 004340 545 --------------------------------------------------------------------SLQKDHETALKN 556 (760)
Q Consensus 545 --------------------------------------------------------------------~~~g~~~~A~~~ 556 (760)
+...++..|++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 333344445555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 557 FQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY-------NSWYGLGMVYLRQEKFEFSEHHFRMAF 629 (760)
Q Consensus 557 ~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~-------~a~~~la~~~~~~g~~~~A~~~l~~al 629 (760)
|..++.++ .+...+...+.+|+..|.+.+++....++++...... .+...+|..|.+.++++.|+.+|++++
T Consensus 247 y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 247 YAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 55555555 4444455555555555555555555555544332211 123345667777888999999999887
Q ss_pred HhCCC--------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 004340 630 QISPH--------------------------SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSL 683 (760)
Q Consensus 630 ~~~p~--------------------------~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~ 683 (760)
..... -..--...|..++..|+|..|+..|.+++..+|+++..|.++|.||.++
T Consensus 326 te~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 326 TEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 65322 2223345688999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHh
Q 004340 684 EKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA-AIEK 749 (760)
Q Consensus 684 g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~ 749 (760)
|.+..|+...+++++++|+....|..-|.++..+.+|++|++.|+++++++|++.++..... +++.
T Consensus 406 ~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988755333 4443
No 33
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.6e-20 Score=194.19 Aligned_cols=281 Identities=16% Similarity=0.176 Sum_probs=259.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccccCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Q 004340 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNT-GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (760)
Q Consensus 435 ~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~-~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 513 (760)
...++..++..++|.+..++++.+.+.+|-+ .+.-..+| ++++.|+..+-..+-.++.+..|..+-.|+..|.-|...
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence 3467888899999999999999999998864 45555666 999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 514 KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQS 593 (760)
Q Consensus 514 ~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~ 593 (760)
++..+|..++.++..++|....+|...|..|...|++++|+.+|..|-++-|......+.+|.-|...++++-|..+|.+
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004340 594 ALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP-------HSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (760)
Q Consensus 594 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-------~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~ 666 (760)
|+.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+ .....+.++|.++.+++++++|+.++++++.+.
T Consensus 406 A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 406 ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999984321 234568999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 004340 667 KKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKR 716 (760)
Q Consensus 667 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~ 716 (760)
|.++.++..+|.+|..+|+++.|++.|.+++.+.|++..+-..|+.+...
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998777777765544
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=8.9e-19 Score=188.09 Aligned_cols=317 Identities=14% Similarity=0.080 Sum_probs=289.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 004340 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH 512 (760)
Q Consensus 433 l~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 512 (760)
-.++..+..+...+.++-|+.+|..+++..|....+|...+..--.-|..++-..+|++++...|.....|..++.-.|.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 35677888888889999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 513 LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQ 592 (760)
Q Consensus 513 l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~ 592 (760)
.|+...|..++..+++.+|++.++|+....+.....+++.|..+|.++....|. ..+|+.-+.+...+++.++|+.+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887654 6788888888899999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Q 004340 593 SALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLP 672 (760)
Q Consensus 593 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~ 672 (760)
.+++..|.....|..+|+++.++++.+.|.+.|...++..|..+.+|..++.+-.+.|..-.|..+++++.-.+|.+...
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~l 755 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALL 755 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------------------------CHHHHHHHHHHHHHcCCHHH
Q 004340 673 MYQKANILLSLEKFDEALEVLEELKEYAPR------------------------------ESGVYALMGKIYKRRNMHEK 722 (760)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~------------------------------~~~~~~~la~~~~~~g~~~~ 722 (760)
|.....+-.+.|..+.|.....++++-.|. ++.++..+|.+++...++++
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887664 56778889999999999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 004340 723 AMLHFGLALDLKPSATDVATIKAAIEKL 750 (760)
Q Consensus 723 A~~~~~~al~l~p~~~~a~~~l~~l~~l 750 (760)
|.++|.+++..+|+..+++...-..+..
T Consensus 836 ar~Wf~Ravk~d~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 836 AREWFERAVKKDPDNGDAWAWFYKFELR 863 (913)
T ss_pred HHHHHHHHHccCCccchHHHHHHHHHHH
Confidence 9999999999999999987765554433
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=2.3e-19 Score=206.45 Aligned_cols=268 Identities=11% Similarity=0.039 Sum_probs=230.2
Q ss_pred CHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHhCCC
Q 004340 465 TGWVLSQVGKAYFEV---VDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK---------EDMKLSYLAQELITTDRL 532 (760)
Q Consensus 465 ~~~~l~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~---------~~~~a~~~~~~~l~~~p~ 532 (760)
+.+.++..|..++.. +++++|+.+|+++++++|++..++..++.++..++ +..+|...++++++.+|+
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 345566777655443 56789999999999999999999999988776443 378999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~ 612 (760)
++.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..++++++++|.+...++.++.++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~ 416 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWIT 416 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888777777778
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004340 613 LRQEKFEFSEHHFRMAFQIS-PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALE 691 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 691 (760)
+..|++++|+..+++++... |+++.++..+|.++...|++++|...+.++....|....++..++..|...| ++|..
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~ 494 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALP 494 (553)
T ss_pred HhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHH
Confidence 88999999999999999875 7888889999999999999999999999998888888888888999988888 47888
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 692 VLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 692 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
.++++++.......-...+..+|.-.|+.+.|..+ +++.+.+.
T Consensus 495 ~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 495 TIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 78777665433333334488888899999888887 77766543
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.85 E-value=4.8e-21 Score=201.99 Aligned_cols=260 Identities=18% Similarity=0.178 Sum_probs=125.4
Q ss_pred HHHHHHhcCChHHHHHHHhccc-cc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Q 004340 438 EGYRMSCMYRCKDALDVYLKLP-HK-HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~-~~-~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~ 515 (760)
.|..++..|++++|++++.+.. .. .|+++..|..+|.+....+++++|+..|++++..++.++..+..++.+ ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 3677789999999999997654 44 488999999999999999999999999999999999988888888888 78899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN--PRFAYGHTLCGHEYVALEDFENGIRSYQS 593 (760)
Q Consensus 516 ~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~--p~~~~a~~~la~~~~~~g~~e~A~~~~~~ 593 (760)
+.+|..++.+..+..+ ++..+.....++...++++++...++++.... +.++..|..+|.++...|+.++|+.+|++
T Consensus 93 ~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999988887664 57778888889999999999999999988655 67788999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 004340 594 ALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (760)
Q Consensus 594 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~ 673 (760)
+++.+|++..++..++.++...|+++++...++...+..|.++.++..+|.++...|++++|+.+|++++...|+++..+
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004340 674 YQKANILLSLEKFDEALEVLEELKEY 699 (760)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~l~~al~~ 699 (760)
..+|.++...|++++|..++.+++..
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988753
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.85 E-value=5e-18 Score=187.50 Aligned_cols=299 Identities=9% Similarity=-0.008 Sum_probs=247.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH-HHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGM-DIYSTVL 510 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~l 510 (760)
....+.+|...+..|+|++|.+.+.+..+..+.....+...+.+....|+++.|..+|.++.+.+|+...+. ...+.++
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 445678888889999999999999987665444344444457777999999999999999999999875444 3448899
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH--------HHHHHHHHHHcC
Q 004340 511 YHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYG--------HTLCGHEYVALE 582 (760)
Q Consensus 511 ~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a--------~~~la~~~~~~g 582 (760)
...|++++|...++++.+.+|+++.++..++.+|...|++++|++.+.+..+..+..... +..+........
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999876654432 222222222333
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004340 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKA 662 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~a 662 (760)
+.+...+.++..-+..|+++.++..++..+...|+.++|...++++++. +.++.+...++.+ ..++++++++.+++.
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~ 320 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQ 320 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHH
Confidence 4445555555554556778999999999999999999999999999995 4456555445544 449999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004340 663 ILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLK 734 (760)
Q Consensus 663 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 734 (760)
++..|+++..+..+|.++...|++++|.++|+++++..|+. ..+..++.++.+.|+.++|..+|++++.+.
T Consensus 321 lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 321 IKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999974 557789999999999999999999998764
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=7.7e-18 Score=197.72 Aligned_cols=316 Identities=14% Similarity=0.068 Sum_probs=219.5
Q ss_pred HHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH
Q 004340 440 YRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKL 519 (760)
Q Consensus 440 ~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a 519 (760)
..+...|+.++|+.+++++....+.....+..+|.++...|+|++|++.|+++++.+|+++.++..++.++...++.++|
T Consensus 76 ~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eA 155 (822)
T PRK14574 76 QIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVV 155 (822)
T ss_pred HHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 33345577777777777777444455555555577777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-------------
Q 004340 520 SYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFEN------------- 586 (760)
Q Consensus 520 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~------------- 586 (760)
...++++...+|..... ..++.++...++..+|++.++++++.+|++..++..+..++...|-...
T Consensus 156 l~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~ 234 (822)
T PRK14574 156 LKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVS 234 (822)
T ss_pred HHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC
Confidence 77777777777764443 4455555556666667777777777777776665554444433332222
Q ss_pred -----------------------------------HHHHHHHHHH---hCCCC---------------------------
Q 004340 587 -----------------------------------GIRSYQSALR---VDARH--------------------------- 601 (760)
Q Consensus 587 -----------------------------------A~~~~~~al~---~~p~~--------------------------- 601 (760)
|+..++..+. ..|..
T Consensus 235 ~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~ 314 (822)
T PRK14574 235 AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKE 314 (822)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2222222222 11210
Q ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004340 602 ------------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP------HSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (760)
Q Consensus 602 ------------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~eAl~~l~~al 663 (760)
..+....|..|+..++.++|+.+|+.++...+ .+......|..++...+++++|..++++..
T Consensus 315 y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~ 394 (822)
T PRK14574 315 YEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYS 394 (822)
T ss_pred HHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 11234456667777777888888877766542 223334667788888889999999988888
Q ss_pred HhCC---------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 664 LADK---------------KNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFG 728 (760)
Q Consensus 664 ~~~p---------------~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 728 (760)
+..| +...+...++.++...|++.+|++.+++++...|.++.+...+|.++...|.+.+|...++
T Consensus 395 ~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 395 EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 7544 1235667789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHH-HHHhcCCCCcc
Q 004340 729 LALDLKPSATDVATIKA-AIEKLHVPDEI 756 (760)
Q Consensus 729 ~al~l~p~~~~a~~~l~-~l~~l~~~dea 756 (760)
.++.++|++..+...+. ....+++.++|
T Consensus 475 ~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 475 AVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 99999999988766555 44566666555
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=2.4e-18 Score=198.11 Aligned_cols=252 Identities=10% Similarity=0.003 Sum_probs=223.3
Q ss_pred cCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Q 004340 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEV---------VDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (760)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~ 515 (760)
.+.+++|+..|++++..+|+++.++..+|.+|... +++++|+..++++++++|++..++..++.++...|+
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34678999999999999999999999999988754 348999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 516 ~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al 595 (760)
+++|...++++++.+|+++.+|+.+|.++...|++++|+..++++++++|.++.++..++.+++..|++++|+..+++++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887777778888999999999999999
Q ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Q 004340 596 RVD-ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (760)
Q Consensus 596 ~~~-p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~ 674 (760)
... |+++.++..+|.++...|++++|+..++++....|....++..++..+...|+ +|...+++.++.....+.-..
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~ 511 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPG 511 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCch
Confidence 875 78889999999999999999999999999999999989999999999998884 777777776665433333333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 004340 675 QKANILLSLEKFDEALEVLEELKEY 699 (760)
Q Consensus 675 ~la~~~~~~g~~~eA~~~l~~al~~ 699 (760)
..+.+|.-.|+-+.+..+ +++.+.
T Consensus 512 ~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 512 LLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 478888888988888777 666553
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=1.9e-17 Score=183.88 Aligned_cols=291 Identities=10% Similarity=0.034 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP-QSWCAMGNCYS 545 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~-~~~~~la~~~~ 545 (760)
......|...+..|+|+.|.+.+.++.+..|.....+...+.+....|+.+++..++.++.+..|+.. .+....+.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 34466788999999999999999999999998888888899999999999999999999999998875 56666799999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHHH
Q 004340 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWY----GLGMVYLRQEKFEFS 621 (760)
Q Consensus 546 ~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~----~la~~~~~~g~~~~A 621 (760)
..|++++|+..++++.+..|+++.++..++.++...|++++|.+.+.+..+....+...+. ....-+...+..+++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999987544433221 222222444555556
Q ss_pred HHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHcCCHHHHHHHHHH
Q 004340 622 EHHFRMAFQISP----HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM--YQKANILLSLEKFDEALEVLEE 695 (760)
Q Consensus 622 ~~~l~~al~~~p----~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~--~~la~~~~~~g~~~eA~~~l~~ 695 (760)
...+..+.+..| +++.++..++..+...|++++|++.++++++..|++.... ..........++.+.+++.+++
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 678888888777 5899999999999999999999999999999999887532 2233334456889999999999
Q ss_pred HHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCChHHHHHHHHHHHhcCCCCccc
Q 004340 696 LKEYAPRES--GVYALMGKIYKRRNMHEKAMLHFG--LALDLKPSATDVATIKAAIEKLHVPDEIE 757 (760)
Q Consensus 696 al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~l~p~~~~a~~~l~~l~~l~~~deae 757 (760)
+++..|+++ .+...+|.++.+.|++++|.++|+ .+++..|+......+...+.++|+.++|.
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999 889999999999999999999999 68889999988777777889999988774
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=3.5e-18 Score=180.99 Aligned_cols=213 Identities=18% Similarity=0.192 Sum_probs=173.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~ 612 (760)
.+..|+.+|.+|...|++++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++++|++..+|..+|.++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 36779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004340 613 LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEV 692 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 692 (760)
...|++++|+..|+++++.+|+++... ....+....+++++|+..+.+++...+... | ..+.++..+|++.++ ..
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~-~~~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKEQ--W-GWNIVEFYLGKISEE-TL 217 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCccc--c-HHHHHHHHccCCCHH-HH
Confidence 999999999999999999999987422 122334556789999999988776543322 2 235666667766443 23
Q ss_pred HHHH-------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhc
Q 004340 693 LEEL-------KEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKP-SATDVATIKAAIEKL 750 (760)
Q Consensus 693 l~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~l~~l 750 (760)
++.+ .++.|....+|+.+|.++...|++++|+.+|+++++.+| +..+....+-.+.++
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 3333 355667788999999999999999999999999999997 666655544445444
No 42
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.83 E-value=8.4e-17 Score=191.21 Aligned_cols=283 Identities=13% Similarity=0.005 Sum_probs=246.2
Q ss_pred HhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHH
Q 004340 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRAS-PYSLEGMDIYSTVLYHLKEDMKLSY 521 (760)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~l~~~~~a~~ 521 (760)
.+.|++++|.++|+++.+. +..+|..+...|.+.|++++|+.+|+++.+.. .-+...+..+..++...++.+++..
T Consensus 270 ~k~g~~~~A~~vf~~m~~~---~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 270 SKCGDIEDARCVFDGMPEK---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HHCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 5689999999999998653 66889999999999999999999999997753 2356678888899999999999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 004340 522 LAQELITTD-RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA- 599 (760)
Q Consensus 522 ~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p- 599 (760)
++..+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|+.++|++.|+++.+...
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999998876 56778899999999999999999999998754 3567899999999999999999999999987532
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 004340 600 RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP--HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (760)
Q Consensus 600 ~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la 677 (760)
.+...+..+...+...|+.++|.++|+.+.+..+ .+...|..+..++.+.|++++|.++++++- ..| +...|..+.
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll 501 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALL 501 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHH
Confidence 2467788888999999999999999999986533 235578899999999999999999988642 223 456788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 678 NILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 678 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
..+...|+++.|...+++++++.|++...|..++.+|...|++++|.+.++.+.+.
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999988754
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=2.6e-17 Score=176.99 Aligned_cols=309 Identities=15% Similarity=0.086 Sum_probs=286.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Q 004340 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (760)
Q Consensus 436 l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~ 515 (760)
+..++.--..|..++-..+|+++....|.....|+..+..+...||...|..++.++++.+|++.+.|.....+.....+
T Consensus 554 lra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e 633 (913)
T KOG0495|consen 554 LRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcccc
Confidence 33444444567888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 516 ~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al 595 (760)
+++|..++.++....| ...+|+.-+.+...++..++|+++++++++..|++...|..+|.++...++.+.|...|...+
T Consensus 634 ~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 634 LERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred HHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999988665 468899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------
Q 004340 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------ 669 (760)
Q Consensus 596 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~------ 669 (760)
+..|.....|..++.+-.+.|..-.|...++++.-.+|++..+|.....+-.+.|..+.|...+.+|++..|.+
T Consensus 713 k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaE 792 (913)
T KOG0495|consen 713 KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAE 792 (913)
T ss_pred ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred ------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004340 670 ------------------------PLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAML 725 (760)
Q Consensus 670 ------------------------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 725 (760)
+.++...|.+++...++++|.++|+++++.+|+..++|..+-..+...|.-+.-.+
T Consensus 793 aI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred HHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 35567788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHH
Q 004340 726 HFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 726 ~~~~al~l~p~~~~a~~~l~ 745 (760)
.|.++....|.+.+.+....
T Consensus 873 v~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 873 VLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHhccCCCCCcHHHHHh
Confidence 99999999999988766433
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=1e-17 Score=169.85 Aligned_cols=203 Identities=18% Similarity=0.182 Sum_probs=188.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~ 612 (760)
.+..++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..|+++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 004340 613 LRQEKFEFSEHHFRMAFQIS--PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEAL 690 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 690 (760)
...|++++|+..+++++... +.....+..+|.++...|++++|...+++++...|.++..+..+|.++...|++++|+
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998753 4556788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 691 EVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 691 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
.++++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999888889999999999999999999999888776654
No 45
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=186.58 Aligned_cols=256 Identities=16% Similarity=0.182 Sum_probs=219.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 004340 470 SQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKD 549 (760)
Q Consensus 470 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 549 (760)
+..|..+++.|+..+|.-.|+.++..+|.+.++|..+|.+....++...++..+.++++++|++-+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHH
Q 004340 550 HETALKNFQRAVQLNPRFAYGHTL-------CGHEYVALEDFENGIRSYQSALRVDA--RHYNSWYGLGMVYLRQEKFEF 620 (760)
Q Consensus 550 ~~~A~~~~~kal~~~p~~~~a~~~-------la~~~~~~g~~e~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~ 620 (760)
-.+|++++.+.+...|........ ....+.....+..-.+.|..+....| .+++++..||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999887654322110 00011122234455667777777777 789999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 004340 621 SEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (760)
Q Consensus 621 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 700 (760)
|+.+|+.|+...|.+..+|+.||..+..-.+.++|+..|.+|+++.|....+++++|..++.+|.|++|+++|-.++.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CC----------CHHHHHHHHHHHHHcCCHHHHHH
Q 004340 701 PR----------ESGVYALMGKIYKRRNMHEKAML 725 (760)
Q Consensus 701 p~----------~~~~~~~la~~~~~~g~~~~A~~ 725 (760)
+. +..+|-.|-.++..+++.+.+..
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 54 12467667677777777765443
No 46
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.81 E-value=4.5e-18 Score=170.43 Aligned_cols=282 Identities=13% Similarity=0.130 Sum_probs=250.7
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004340 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNC 543 (760)
Q Consensus 464 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~ 543 (760)
.+..-.+.+|..++..|++.+|+..|..+++.+|++..+++..+++|..+|+...+..-+.+++++.|+-..+....|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34455677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCH---HHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 544 YSLQKDHETALKNFQRAVQLNPRFA---YGH------------TLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGL 608 (760)
Q Consensus 544 ~~~~g~~~~A~~~~~kal~~~p~~~---~a~------------~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~l 608 (760)
+..+|++++|..-|..+++.+|... +++ ......+...|+...|+.+....+++.|-++..+...
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 9999999999999999999998543 222 2234455668999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH------------H
Q 004340 609 GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQ------------K 676 (760)
Q Consensus 609 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~------------l 676 (760)
+.||...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++-.++-. -
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998654321 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004340 677 ANILLSLEKFDEALEVLEELKEYAPRES----GVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 677 a~~~~~~g~~~eA~~~l~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
+......++|.++++..++.++..|..+ ..+..+-.|+...|++.+|+....++++++|++.++..-++
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 3345677899999999999999999754 34566788999999999999999999999999987765444
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=5.5e-18 Score=174.71 Aligned_cols=283 Identities=13% Similarity=0.104 Sum_probs=157.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccccCCCCH-HHHHHHHHHHHH--ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 004340 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTG-WVLSQVGKAYFE--VVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH 512 (760)
Q Consensus 436 l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~-~~l~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 512 (760)
+.++-.++..|+++.|+++++-....+.... .+-..+..+++- -.++.+|.++-+.++..+.+++.++...+.+.+.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 4455555666666666666555444333211 122233333333 2355555555555555555555555555555555
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 513 LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQ 592 (760)
Q Consensus 513 l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~ 592 (760)
.|++++|...+.+++..+....++++.+|..+..+|+.++|+.+|-+.-.+--+++++++.++.+|..+.+..+|++++.
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555544555555555555555555555555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Q 004340 593 SALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLP 672 (760)
Q Consensus 593 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~ 672 (760)
++..+-|+++.++..||.+|-+.|+...|..++-......|.+.+..-.+|..|....-+++|+.+|+++--+.|+....
T Consensus 583 q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 583 QANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred HhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Q 004340 673 MYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN 718 (760)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 718 (760)
...++.|+.+.|+|.+|.+.|+..-...|.+.+.+..|.++.-.+|
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 5555555555555555555555555555555555555555555544
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=4.4e-19 Score=176.58 Aligned_cols=241 Identities=13% Similarity=0.141 Sum_probs=143.5
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004340 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNC 543 (760)
Q Consensus 464 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~ 543 (760)
.+.|.-..+|+||+.+|-+.+|.+.|+..++..|. + +.+..++.+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~----------------------------------dTfllLskv 265 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-P----------------------------------DTFLLLSKV 265 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-h----------------------------------hHHHHHHHH
Confidence 35677788999999999999999999999998774 3 444445555
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004340 544 YSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEH 623 (760)
Q Consensus 544 ~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 623 (760)
|.+..+...|+..|...++..|.+...+...+.++..++++++|.++|+.+++.+|.+.++...+|.-|+.-++.+-|+.
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 004340 624 HFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK---NPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (760)
Q Consensus 624 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 700 (760)
+|++.+++.-.++++++++|.+++..++++-++..|++++..... -.++|+++|.+....|++.-|..+|+-++..+
T Consensus 346 yYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 346 YYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 555555555555555555555555555555555555555544321 23455555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004340 701 PRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 701 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
+++.+++.+||.+..+.|+.++|..++..|-...|+-.+
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 555555555555555555555555555555555555433
No 49
>PLN03077 Protein ECB2; Provisional
Probab=99.81 E-value=2.9e-16 Score=191.09 Aligned_cols=282 Identities=11% Similarity=0.007 Sum_probs=240.0
Q ss_pred HHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Q 004340 442 MSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSY 521 (760)
Q Consensus 442 ~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~ 521 (760)
+.+.|++++|+++|+++.+. +...|..+...|...|++++|+.+|++++...+.+...+..+..++...|..+.+..
T Consensus 434 y~k~g~~~~A~~vf~~m~~~---d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPEK---DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHcCCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 36789999999999998764 346788899999999999999999999987655566677777788889999999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Q 004340 522 LAQELITTD-RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV--D 598 (760)
Q Consensus 522 ~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~--~ 598 (760)
+...+++.. ..+...+..+...|.+.|+.++|...|+.. +.+...|..+...|...|+.++|++.|+++.+. .
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 888887754 234566778889999999999999999886 567889999999999999999999999999875 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 004340 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP--HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676 (760)
Q Consensus 599 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~l 676 (760)
|+ ...+..+...+.+.|++++|.++|+.+.+..+ .+...|..+..++.+.|++++|.+++++. ...| +..+|..+
T Consensus 587 Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aL 663 (857)
T PLN03077 587 PD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGAL 663 (857)
T ss_pred CC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHH
Confidence 44 55667777789999999999999999885432 24578899999999999999999999986 3444 46678777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 677 ANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 677 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
...+...|+.+.|....++++++.|++...|..++.+|...|++++|.+..+...+.
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 788888999999999999999999999999999999999999999999999888653
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=2.3e-17 Score=170.20 Aligned_cols=279 Identities=12% Similarity=0.067 Sum_probs=253.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 468 VLSQVGKAYFEVVDYLEAERAFTLARRASPYSL-EGMDIYSTVLYHL--KEDMKLSYLAQELITTDRLAPQSWCAMGNCY 544 (760)
Q Consensus 468 ~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~l--~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~ 544 (760)
+-...+--|++.|+++.|++++.-.-+.+.... .+-..+..+++.. .++.+|..+.+.++..+..++.++...|++.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 334577789999999999999977666554332 2334455555553 3588999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004340 545 SLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHH 624 (760)
Q Consensus 545 ~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 624 (760)
+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+++|-+.-.+--++.++++.++.+|..+.+...|+++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 004340 625 FRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (760)
Q Consensus 625 l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 704 (760)
+-++..+-|.++.++..+|.+|-+.|+..+|.+++-......|.+.+..-.+|..|....-+++|+.+|+++.-+.|...
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004340 705 GVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAA 746 (760)
Q Consensus 705 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~ 746 (760)
.....++.|+.+.|+|++|.+.|+..-...|.+.+....+-.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr 702 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR 702 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 999999999999999999999999999999999886554443
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=2.2e-17 Score=158.50 Aligned_cols=209 Identities=20% Similarity=0.191 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~ 613 (760)
..+...+|.-|+..|++..|.+-+++|++.+|++..+|..+|++|...|+.+.|.+.|++|+.++|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004340 614 RQEKFEFSEHHFRMAFQI--SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALE 691 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 691 (760)
.+|++++|...|++|+.. .+..+..+.++|.|..+.|+++.|..+|+++++++|+.+.....++..+++.|+|..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999999964 455678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 004340 692 VLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVAT 742 (760)
Q Consensus 692 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 742 (760)
++++.....+-....+....++....|+-+.|.++=.+.....|...+...
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 999998888878888999999999999999999999999999999886543
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=1.2e-16 Score=176.62 Aligned_cols=288 Identities=11% Similarity=0.140 Sum_probs=235.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSW-CAMGNCYS 545 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~-~~la~~~~ 545 (760)
.-.+..|...+..|+|++|.+.+.+.-+..+.....+...+.+....|+++.+..++.++.+.+|+..... ...+.++.
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34456788888899999999888876665433333344445666999999999999999999999886443 45599999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCC
Q 004340 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYN--------SWYGLGMVYLRQEK 617 (760)
Q Consensus 546 ~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~--------a~~~la~~~~~~g~ 617 (760)
..|++++|+..++++.+.+|+++.++..++.+|...|++++|+..+.+..+....+.. ++..+........+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999987665433 22222222333344
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELK 697 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 697 (760)
.+....+++...+..|+++.+...++..+...|+.++|...++++++. +.++.....++.+ ..++++++++.+++.+
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~l 321 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHH
Confidence 555566666665667789999999999999999999999999999994 4455544444443 4499999999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCccc
Q 004340 698 EYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEKLHVPDEIE 757 (760)
Q Consensus 698 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l~~~deae 757 (760)
+..|+++..+..+|.++...|++++|.++|+++++..|++.....+...+++.|+.++|.
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999988666777889999887764
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.9e-17 Score=168.34 Aligned_cols=284 Identities=13% Similarity=0.076 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 511 (760)
++..+++ .++..|++.+|+..|+++.-.+|.+....-..|..+...|++++-..+-..++........-|+.-+..+|
T Consensus 234 Ll~~lak--~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 234 LMMALGK--CLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHhh--hhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence 4444444 44778999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSY 591 (760)
Q Consensus 512 ~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~ 591 (760)
..+++..|..+.++.++.+|.+.+++...|.++...+++++|+-.|+.|..+.|...+.|..+.++|...|.+.+|....
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004340 592 QSALRVDARHYNSWYGLG-MVY-LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669 (760)
Q Consensus 592 ~~al~~~p~~~~a~~~la-~~~-~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~ 669 (760)
+.+++..|.++.++..+| .++ ..-.--++|...+++++.+.|....+...++.++...|++++++.++++.+...|+.
T Consensus 392 n~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 392 NWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred HHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 999999999999998886 444 334456899999999999999999999999999999999999999999999988854
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Q 004340 670 PLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN 718 (760)
Q Consensus 670 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 718 (760)
..+..+|.++...+.+++|+++|..++.++|++......+-.+-....
T Consensus 472 -~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 472 -NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 578889999999999999999999999999998877766655544443
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.79 E-value=4.3e-17 Score=172.70 Aligned_cols=232 Identities=12% Similarity=0.054 Sum_probs=147.5
Q ss_pred CChHHHHHHHhcccccCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Q 004340 446 YRCKDALDVYLKLPHKHY----NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSY 521 (760)
Q Consensus 446 g~~~eAi~~l~~~~~~~p----~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~ 521 (760)
++.+.++..+.+++...+ ..+..++.+|.+|...|++++|+..|+++++.+|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P------------------------ 95 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP------------------------ 95 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC------------------------
Confidence 455666666666554222 2344566666666666666666666666555554
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004340 522 LAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH 601 (760)
Q Consensus 522 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~ 601 (760)
+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++.+|++
T Consensus 96 ----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 96 ----------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred ----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5566777777777777788888888888887788777777778887777788888888888888777776
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-------HHhCCCChHHHH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKA-------ILADKKNPLPMY 674 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~a-------l~~~p~~~~~~~ 674 (760)
+..... ..+....+++++|+..|.+++...+... |. .+.+....|+..++ ..++.+ .++.|....+|+
T Consensus 166 ~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~ 240 (296)
T PRK11189 166 PYRALW-LYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYF 240 (296)
T ss_pred HHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 532111 1233455677888888866654432222 21 34555556655433 233332 244556667888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Q 004340 675 QKANILLSLEKFDEALEVLEELKEYAP-RESGVYALMGKIYKR 716 (760)
Q Consensus 675 ~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~~~~la~~~~~ 716 (760)
.+|.++...|++++|+.+|+++++.+| +..+..+.+..+...
T Consensus 241 ~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 241 YLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 888888888888888888888888876 445555555554444
No 55
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.79 E-value=2.7e-16 Score=186.83 Aligned_cols=305 Identities=11% Similarity=0.041 Sum_probs=251.5
Q ss_pred CChHHHHHHHhcccccC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 004340 446 YRCKDALDVYLKLPHKH-YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQ 524 (760)
Q Consensus 446 g~~~eAi~~l~~~~~~~-p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~ 524 (760)
|..+.+..++..+.+.. ..+..++..+...|.+.|++++|.+.|+++. +.+...|..+...+...|+.++|..+++
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34444444444443322 2356788889999999999999999999764 4577889999999999999999999999
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004340 525 ELITTD-RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN-PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY 602 (760)
Q Consensus 525 ~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~-p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~ 602 (760)
++.+.. .-+..++..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+.
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~ 391 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNL 391 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCe
Confidence 987653 3356789999999999999999999999999875 55678899999999999999999999998754 356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Q 004340 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQIS-PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK--NPLPMYQKANI 679 (760)
Q Consensus 603 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~--~~~~~~~la~~ 679 (760)
..|..+...|.+.|+.++|++.|+++.+.. .-+...+..+..++...|..++|.++|+.+.+...- +...|..+..+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 789999999999999999999999988753 234667888889999999999999999999875332 34578889999
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH-HHHHHHhcCCCCcccc
Q 004340 680 LLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVAT-IKAAIEKLHVPDEIED 758 (760)
Q Consensus 680 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~l~~l~~l~~~deaee 758 (760)
|.+.|++++|.+.++++- ..| +..+|..+...+...|+++.|...+++++++.|++...+. +...+.+.|+.++|.+
T Consensus 472 l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999999987642 234 4678999999999999999999999999999998765555 4446778888877653
No 56
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=4.7e-18 Score=182.05 Aligned_cols=257 Identities=15% Similarity=0.101 Sum_probs=221.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 513 (760)
.-|.+|..+++.|+..+|.-.|+.++..+|.+..+|..||.+..+.++-..|+..++++++++|++.+++..+|..|...
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCH
Q 004340 514 KEDMKLSYLAQELITTDRLAPQSWCA-------MGNCYSLQKDHETALKNFQRAVQLNP--RFAYGHTLCGHEYVALEDF 584 (760)
Q Consensus 514 ~~~~~a~~~~~~~l~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~kal~~~p--~~~~a~~~la~~~~~~g~~ 584 (760)
+...+|..++++.+...|.....-.. ...-+.....+..-.++|-.+....| .+++++..||.+|...|+|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999999999887753211110 00011112234455667777777777 7899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004340 585 ENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAIL 664 (760)
Q Consensus 585 e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~ 664 (760)
++|+.+|+.|+...|++...|..||-.+....+.++|+..|++|+++.|....+++++|..++.+|.|++|.++|-.||.
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC----------hHHHHHHHHHHHHcCCHHHHH
Q 004340 665 ADKKN----------PLPMYQKANILLSLEKFDEAL 690 (760)
Q Consensus 665 ~~p~~----------~~~~~~la~~~~~~g~~~eA~ 690 (760)
+.+.. ..+|-.|-.++...++.+-+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 86541 135666666666666666443
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=165.94 Aligned_cols=218 Identities=14% Similarity=0.114 Sum_probs=203.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004340 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK 617 (760)
Q Consensus 538 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 617 (760)
..+|.||++.|.+.+|.+.++.+++..| .++.+..++.+|.+..+.+.|+..|...++..|.+......++.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4689999999999999999999998876 478999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELK 697 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 697 (760)
+++|.++|+.+++.+|.+.++...+|.-|+.-++++-|+.+|++.+++.-.+++.+.++|.|++..++++-++..|++++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH-hcCCCCcc
Q 004340 698 EYAP---RESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIE-KLHVPDEI 756 (760)
Q Consensus 698 ~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~-~l~~~dea 756 (760)
.... .-.++|+++|.+....|++..|..+|+-++..++++.++...++.++ +-|+.++|
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence 8754 24689999999999999999999999999999999999999988775 33444443
No 58
>PLN03077 Protein ECB2; Provisional
Probab=99.79 E-value=2.2e-15 Score=183.31 Aligned_cols=148 Identities=9% Similarity=0.051 Sum_probs=111.2
Q ss_pred HHHHHHHHhhccchhHHHHHHhhhhcCCCchhhHHHHHHHhhcCCHHHHHHHhccC------CCcchhHHHHHHHHhcCC
Q 004340 6 TDCVQNSLRYFMYRNAIFLCERLCAEFPSEVNLQLLATCYLQNNQAYAAYNILKGT------QMALSRYLFAVACYQMDL 79 (760)
Q Consensus 6 ~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~~~llA~~~~~~~~~~~a~~~l~~~------~~~~~~yl~a~c~~~l~~ 79 (760)
-.+|.-+...+.++.|..+-+++- .++....-.|-..|.+.|++..|..++... .+.-..-.+-.+|.++++
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMP--RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCC--CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 467777888899998888777763 233334455667899999999999999865 233344556667788999
Q ss_pred hhHHHHhhCCCCCCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCcchHHHH-HHHhcCCccchhHHhHHh
Q 004340 80 LSEAEAALSPVNEPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYE-ELCMLGAAEEATAVFSEA 157 (760)
Q Consensus 80 ~~ea~~~l~~~~~~~~~~p~~a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~~w~af~-~Lc~~g~~~~~~~~f~~~ 157 (760)
+++|..++...... .-.|| ..++.-|-..|.+.|+.++|...|.+...-|+..|.+.. .+|+.|...++.++|...
T Consensus 304 ~~~a~~l~~~~~~~-g~~~d-~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 304 ERLGREMHGYVVKT-GFAVD-VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred hHHHHHHHHHHHHh-CCccc-hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999877421110 11244 445777777999999999999999999999999999985 678889888889999853
No 59
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.1e-17 Score=173.50 Aligned_cols=289 Identities=19% Similarity=0.196 Sum_probs=221.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 004340 469 LSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK 548 (760)
Q Consensus 469 l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g 548 (760)
+-..|.+.+..|+|+.|+.+|..++.++|.+...+...+.++..++++.+|..-..+.+++.|.-+..|..+|..+...|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------------------------------------------
Q 004340 549 DHETALKNFQRAVQLNPRFAYGHTLCGHEYV------------------------------------------------- 579 (760)
Q Consensus 549 ~~~~A~~~~~kal~~~p~~~~a~~~la~~~~------------------------------------------------- 579 (760)
+|++|+..|.+.++.+|++...+..++.++.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999999999988776666655542
Q ss_pred -----------------------------------------------------------------------HcCCHHHHH
Q 004340 580 -----------------------------------------------------------------------ALEDFENGI 588 (760)
Q Consensus 580 -----------------------------------------------------------------------~~g~~e~A~ 588 (760)
...+++.|+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 222233333
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 004340 589 RSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS-------SVIMSYLGTAMHALKRSGEAIEMMEK 661 (760)
Q Consensus 589 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~~~~~la~~~~~~g~~~eAl~~l~~ 661 (760)
+.|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++..... ...+..+|..+.+.++++.|+.+|++
T Consensus 245 q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 245 QHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 4444444443 333333444444444444444444443333332211 11223355577777888899999988
Q ss_pred HHHhCCC--------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 662 AILADKK--------------------------NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYK 715 (760)
Q Consensus 662 al~~~p~--------------------------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~ 715 (760)
++...-. -..--...|..++..|+|..|+..|.+++..+|+++..|.+.|.||.
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 8764322 12223456889999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHhcCCCCcccc
Q 004340 716 RRNMHEKAMLHFGLALDLKPSATDVATIKA-AIEKLHVPDEIED 758 (760)
Q Consensus 716 ~~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~l~~~deaee 758 (760)
++|.+..|+...+++++++|+...++..++ ++..+.++++|.+
T Consensus 404 kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888777 4667777766643
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=1.2e-16 Score=161.90 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=142.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCY 544 (760)
Q Consensus 465 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~ 544 (760)
.+.++..+|.+++..|++++|+..|+++++.+|.+. .++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----------------------------------~~~~~la~~~ 75 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY----------------------------------LAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----------------------------------HHHHHHHHHH
Confidence 467788888888888888888888888887766654 4455566666
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 004340 545 SLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD--ARHYNSWYGLGMVYLRQEKFEFSE 622 (760)
Q Consensus 545 ~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~A~ 622 (760)
...|++++|++.+++++...|.+..++..+|.++...|++++|+..|++++... +.....+..+|.++...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666666666666666666666666666666666666666542 334556666777777777777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 004340 623 HHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (760)
Q Consensus 623 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 700 (760)
..+++++...|.+...+..+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 156 KYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 777777777777777777777777777777777777777777766666666677777777777777777766665543
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=4e-16 Score=171.83 Aligned_cols=301 Identities=17% Similarity=0.092 Sum_probs=238.7
Q ss_pred HHHHHhcCChHHHHHHHhccccc-----CCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHHCCCCHHH
Q 004340 439 GYRMSCMYRCKDALDVYLKLPHK-----HYNTGWVLSQVGKAYFEV-----------VDYLEAERAFTLARRASPYSLEG 502 (760)
Q Consensus 439 a~~~~~~g~~~eAi~~l~~~~~~-----~p~~~~~l~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~ 502 (760)
....-..+.+++++++..+++.. ..-.+..+..+|.+|-.+ ....++++.++++++.+|.++.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 33344556667777777766552 122456677777777432 23467788888888888888888
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004340 503 MDIYSTVLYHLKEDMKLSYLAQELITT-DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL 581 (760)
Q Consensus 503 ~~~la~~l~~l~~~~~a~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~ 581 (760)
.+.++.-+...++...|...+.++++. ..+++.+|..++.++...+++.+|+.+.+.++...|++........++-...
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 888888888888888888888888888 5567788888888888888888888888888887776544444444444444
Q ss_pred CCHHHHHHHHHHHHHh---------------------------------------------------C-----C------
Q 004340 582 EDFENGIRSYQSALRV---------------------------------------------------D-----A------ 599 (760)
Q Consensus 582 g~~e~A~~~~~~al~~---------------------------------------------------~-----p------ 599 (760)
++.++|+..+...+.+ . |
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 5544444443332211 0 0
Q ss_pred --CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Q 004340 600 --RH-----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLP 672 (760)
Q Consensus 600 --~~-----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~ 672 (760)
+. ...|...+..+...+..++|.-++.++-+++|..+..|+..|.++...|.+++|.+.|..++.++|+++.+
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s 720 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS 720 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence 00 13477888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004340 673 MYQKANILLSLEKFDEALE--VLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~--~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
...+|.++...|+..-|.. .+..+++++|.++++|+.+|.++.++|+.++|.++|..++++++.++.
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999998888888 999999999999999999999999999999999999999999988874
No 62
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.77 E-value=2.7e-15 Score=181.01 Aligned_cols=312 Identities=11% Similarity=0.014 Sum_probs=223.3
Q ss_pred HhcCChHHHHHHHhcccccCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHH
Q 004340 443 SCMYRCKDALDVYLKLPHKHY-NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP-YSLEGMDIYSTVLYHLKEDMKLS 520 (760)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~p-~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~l~~~~~a~ 520 (760)
...|++++|..+|..+.+... .+..++..+..+|.+.|++++|.++|+++.+... .+...+..+...+...|+.++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 455777777777777765543 3566777777777778888888888877776543 25667777777777788888887
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 521 YLAQELITTD-RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL----NPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 521 ~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~----~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al 595 (760)
.++.++.... ..+..+|..+...|.+.|++++|.++|.++... .| +...|..+...|.+.|++++|.++|+.+.
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777776543 224667777777788888888888888777652 33 35667777777888888888888888877
Q ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChH
Q 004340 596 RVD-ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI--SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD-KKNPL 671 (760)
Q Consensus 596 ~~~-p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~-p~~~~ 671 (760)
+.+ +.+...|..+...|.+.|++++|+..|+++.+. .| +...|..+...+.+.|++++|.++++++.+.. +.+..
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 765 345667777777888888888888888777765 33 35667777778888888888888888877654 33556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCChHHHHHHHHHH
Q 004340 672 PMYQKANILLSLEKFDEALEVLEELKEY--APRESGVYALMGKIYKRRNMHEKAMLHFGLALD--LKPSATDVATIKAAI 747 (760)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~l 747 (760)
.|..+...|.+.|++++|+++|+++.+. .| +...|..+...|.+.|++++|+++|+++.. +.|+......++..+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 7777888888888888888888877653 33 466778888888888888888888887764 557766655666666
Q ss_pred HhcCCCCccc
Q 004340 748 EKLHVPDEIE 757 (760)
Q Consensus 748 ~~l~~~deae 757 (760)
.+.++.++|.
T Consensus 765 ~k~G~le~A~ 774 (1060)
T PLN03218 765 ERKDDADVGL 774 (1060)
T ss_pred HHCCCHHHHH
Confidence 6666655543
No 63
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.4e-17 Score=171.22 Aligned_cols=271 Identities=17% Similarity=0.113 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 511 (760)
.-...+++...+...+|.+|+..|..+++..|+++..|...+..+...|+|++|.-..++.++++|.........+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 44556677778888899999999999999999998899999999999999999999999999999988888888888888
Q ss_pred HccCHHHHHHHHHHHH-----H-h---C---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004340 512 HLKEDMKLSYLAQELI-----T-T---D---------RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTL 573 (760)
Q Consensus 512 ~l~~~~~a~~~~~~~l-----~-~---~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~ 573 (760)
.+++..+|...++..- . + . |....+-...+.|+...+++++|+..--..+++++.+.++++.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v 208 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV 208 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence 8888887777665211 0 0 0 1111223344555555666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HH
Q 004340 574 CGHEYVALEDFENGIRSYQSALRVDARHYN------------SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS----SV 637 (760)
Q Consensus 574 la~~~~~~g~~e~A~~~~~~al~~~p~~~~------------a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~ 637 (760)
.|.+++..++.+.|+..|++++.++|++.. .|..-|.-.++.|++.+|.+.|..++.++|++ ..
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 666666666666666666666666655432 24444555555555555555555555555554 23
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
+|.+.+.+..++|+..+|+..++.++.+++....++...|.|+..+++|++|++.|+++++...+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45555555555555555555555555555555555555555555555555555555555555443
No 64
>PLN02789 farnesyltranstransferase
Probab=99.76 E-value=3.7e-16 Score=165.39 Aligned_cols=246 Identities=13% Similarity=0.032 Sum_probs=186.9
Q ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 004340 480 VDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK-DHETALKNFQ 558 (760)
Q Consensus 480 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~ 558 (760)
++|.+|..+|+.++.... +..+|..+..++++++|.+..+|...+.++...| ++++|+.++.
T Consensus 34 ~~~~~a~~~~ra~l~~~e-----------------~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYASDE-----------------RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHHcCC-----------------CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 566667777766655433 3455666667777777777888888888877777 5688888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004340 559 RAVQLNPRFAYGHTLCGHEYVALEDF--ENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS 636 (760)
Q Consensus 559 kal~~~p~~~~a~~~la~~~~~~g~~--e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 636 (760)
++++.+|++..+|...+.++...|+. ++++.++.++++.+|.+..+|...+.++...|++++|++++.++++.+|.+.
T Consensus 97 ~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 97 DVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred HHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence 88888888888888888877777763 6778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHc---CCh----HHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHH
Q 004340 637 VIMSYLGTAMHAL---KRS----GEAIEMMEKAILADKKNPLPMYQKANILLS----LEKFDEALEVLEELKEYAPRESG 705 (760)
Q Consensus 637 ~~~~~la~~~~~~---g~~----~eAl~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~ 705 (760)
.+|+..+.++... |.+ ++++.+..+++..+|++..+|..++.++.. +++..+|++.+.+++...|..+.
T Consensus 177 sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ 256 (320)
T PLN02789 177 SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVF 256 (320)
T ss_pred hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHH
Confidence 8888888877665 323 467788888888888888888888888877 45567788888888888888888
Q ss_pred HHHHHHHHHHHcC------------------CHHHHHHHHHHHHhcCCChHHHHH
Q 004340 706 VYALMGKIYKRRN------------------MHEKAMLHFGLALDLKPSATDVAT 742 (760)
Q Consensus 706 ~~~~la~~~~~~g------------------~~~~A~~~~~~al~l~p~~~~a~~ 742 (760)
++..|+.+|.... ..++|.+.++..-+.||=-...+.
T Consensus 257 al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 257 ALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred HHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 8888888887532 236677777777556665554443
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.75 E-value=5.6e-16 Score=148.89 Aligned_cols=207 Identities=15% Similarity=0.155 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (760)
Q Consensus 466 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~ 545 (760)
..+...+|.-|+..|++..|..-++++++.+|. +..+|..+|.+|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs----------------------------------~~~a~~~~A~~Yq 80 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS----------------------------------YYLAHLVRAHYYQ 80 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------------------------------cHHHHHHHHHHHH
Confidence 456777788888888888888877777776665 4567777888888
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004340 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV--DARHYNSWYGLGMVYLRQEKFEFSEH 623 (760)
Q Consensus 546 ~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~ 623 (760)
..|+.+.|.+.|++|+.++|++.+++.+.|..++.+|++++|...|++|+.. .+.....|.++|.|.++.|+++.|.+
T Consensus 81 ~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 81 KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 8888888888888888888888888888888888888888888888888874 34557788889999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 004340 624 HFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (760)
Q Consensus 624 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 703 (760)
+|+++++++|+.+.....++..+++.|+|-.|..++++.....+-....+.....+-...|+-+.|-++=.++....|..
T Consensus 161 ~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 161 YLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 99999999999888888899999999999999988888888877777888888888888888888888888888888876
Q ss_pred HHH
Q 004340 704 SGV 706 (760)
Q Consensus 704 ~~~ 706 (760)
.+.
T Consensus 241 ~e~ 243 (250)
T COG3063 241 EEY 243 (250)
T ss_pred HHH
Confidence 554
No 66
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.75 E-value=9.2e-15 Score=176.44 Aligned_cols=312 Identities=9% Similarity=0.004 Sum_probs=262.8
Q ss_pred HhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHH
Q 004340 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP-YSLEGMDIYSTVLYHLKEDMKLSY 521 (760)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~l~~~~~a~~ 521 (760)
...|..++|+.+|..+.. | +..+|..+-.++...|++++|..+|+++.+... .+...+..+..++...|+.++|..
T Consensus 417 ~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 417 KKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred HHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 345677778777777665 3 457778888889999999999999999988653 356788888999999999999999
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 004340 522 LAQELITTDR-LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN-PRFAYGHTLCGHEYVALEDFENGIRSYQSALRV-- 597 (760)
Q Consensus 522 ~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~-p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~-- 597 (760)
+++++.+... .+..+|..+...|.+.|++++|+++|.++.... ..+...|..+...|.+.|++++|.+.|.++...
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 9999987654 378899999999999999999999999997653 234778999999999999999999999999763
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHH
Q 004340 598 --DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS-PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD-KKNPLPM 673 (760)
Q Consensus 598 --~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~-p~~~~~~ 673 (760)
.|+ ...|..+...|.+.|++++|.+.|+++.+.. +.+...|..+...|.+.|++++|+++|+++.+.. .-+...|
T Consensus 574 gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 574 PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 343 6788889999999999999999999998876 4567889999999999999999999999998763 2246688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhc
Q 004340 674 YQKANILLSLEKFDEALEVLEELKEYA-PRESGVYALMGKIYKRRNMHEKAMLHFGLALD--LKPSATDVATIKAAIEKL 750 (760)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~l~~l 750 (760)
..+...|.+.|++++|.++++++.+.. +.+...|..+..+|.+.|++++|.+.|+++.+ +.|+......++..+.+.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 889999999999999999999998864 34678999999999999999999999999865 577776666677778888
Q ss_pred CCCCcccc
Q 004340 751 HVPDEIED 758 (760)
Q Consensus 751 ~~~deaee 758 (760)
++.++|.+
T Consensus 733 G~~eeAle 740 (1060)
T PLN03218 733 NQLPKALE 740 (1060)
T ss_pred CCHHHHHH
Confidence 88777643
No 67
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-16 Score=164.69 Aligned_cols=267 Identities=16% Similarity=0.157 Sum_probs=242.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 004340 471 QVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDH 550 (760)
Q Consensus 471 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 550 (760)
..|..++...+|.+|+..|..|++..|++...|...+.++.++++++++.-.++..+.++|..+......+.++...++.
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH------------Hh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 551 ETALKNFQRAV------------QL------NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (760)
Q Consensus 551 ~~A~~~~~kal------------~~------~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~ 612 (760)
.+|...++..- .+ .|....+....+.++...|++++|...--..+++++.+.++++..|.++
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~ 213 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCL 213 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccc
Confidence 88886665221 01 1334566778899999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHH
Q 004340 613 LRQEKFEFSEHHFRMAFQISPHSSV------------IMSYLGTAMHALKRSGEAIEMMEKAILADKKN----PLPMYQK 676 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~p~~~~------------~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~----~~~~~~l 676 (760)
...++.+.|+.+|++++.++|+... .+..-|.-.++.|++.+|.+.|..+|.++|.+ ..+|.++
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 9999999999999999999998743 46677999999999999999999999999986 4678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 677 ANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 677 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
|.+...+|+..+|+...+.++.+++....++...|.|+..++++++|++.|+++++...+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999988773
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=5.8e-15 Score=147.77 Aligned_cols=282 Identities=14% Similarity=0.087 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 511 (760)
+-+.+-+|..++-..+.++|++.|..+++.+|...++.+.+|..+...|..+.|+.+-+..++. |+....
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~--------- 104 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFE--------- 104 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchH---------
Confidence 4455566666666677777777777777777777777777777777777777777766555442 321110
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSY 591 (760)
Q Consensus 512 ~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~ 591 (760)
....+.+.+|.-|...|-+|.|...|....+...--..+...|..+|....+|++|++..
T Consensus 105 --------------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 105 --------------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred --------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 012345556666666666666666666665544444456666666666666666666666
Q ss_pred HHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004340 592 QSALRVDARH-----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (760)
Q Consensus 592 ~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~ 666 (760)
++..++.+.. +..|..++..+....+.+.|...+.++++.+|....+-..+|.++...|+|+.|++.++.+++.+
T Consensus 165 ~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 165 ERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred HHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence 6666665544 23455566666666666666666666666666666666666666666666666666666666666
Q ss_pred CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 004340 667 KKN-PLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIK 744 (760)
Q Consensus 667 p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l 744 (760)
|+. +++.-.+..+|..+|+.++.+..+.++.+..+. +.+...++..-....-.+.|..++.+-+...|+-...+.++
T Consensus 245 ~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~ 322 (389)
T COG2956 245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLM 322 (389)
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence 654 345555666666666666666666666665553 34444455555555555666666666666666655444333
No 69
>PLN02789 farnesyltranstransferase
Probab=99.73 E-value=2e-15 Score=159.79 Aligned_cols=230 Identities=14% Similarity=0.067 Sum_probs=126.3
Q ss_pred hcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 004340 444 CMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVV-DYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYL 522 (760)
Q Consensus 444 ~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~ 522 (760)
..+++++|+..+.+++..+|.+..+|..+|.++..+| ++++|+..++++++.+|.+..+|...+.++..+++.
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~------ 122 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD------ 122 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch------
Confidence 3456666666666666666666666666666666666 456666666666666666555555555444444432
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004340 523 AQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY 602 (760)
Q Consensus 523 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~ 602 (760)
.+++++.+++++++.+|++..+|..++.++...|++++|++++.++++.+|.+.
T Consensus 123 --------------------------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 123 --------------------------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred --------------------------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence 013445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChH
Q 004340 603 NSWYGLGMVYLRQ---EKF----EFSEHHFRMAFQISPHSSVIMSYLGTAMHA----LKRSGEAIEMMEKAILADKKNPL 671 (760)
Q Consensus 603 ~a~~~la~~~~~~---g~~----~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eAl~~l~~al~~~p~~~~ 671 (760)
.+|..++.++... |.+ ++++.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.++.
T Consensus 177 sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ 256 (320)
T PLN02789 177 SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVF 256 (320)
T ss_pred hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHH
Confidence 5555555544433 111 345555555555555555555555555555 23344555555555555555555
Q ss_pred HHHHHHHHHHHcC------------------CHHHHHHHHHHHHHHCCCCHH
Q 004340 672 PMYQKANILLSLE------------------KFDEALEVLEELKEYAPRESG 705 (760)
Q Consensus 672 ~~~~la~~~~~~g------------------~~~eA~~~l~~al~~~p~~~~ 705 (760)
++-.++.+|.... ..++|.++++.+-+.+|-...
T Consensus 257 al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~ 308 (320)
T PLN02789 257 ALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRN 308 (320)
T ss_pred HHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHH
Confidence 5555555554321 235677777666555553333
No 70
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.73 E-value=1.6e-15 Score=169.97 Aligned_cols=295 Identities=14% Similarity=0.086 Sum_probs=230.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Q 004340 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (760)
Q Consensus 437 ~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~ 516 (760)
.+|..++..++...|+..|+.++..+|.+..+|..+|.+|...|.|..|++.|.++..++|.+..+.+..+.+....|++
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhH
Confidence 36777788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------C-CCCHHHHHHHHHHHHH-
Q 004340 517 MKLSYLAQELITTDRL-------APQSWCAMGNCYSLQKDHETALKNFQRAVQL-------N-PRFAYGHTLCGHEYVA- 580 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~kal~~-------~-p~~~~a~~~la~~~~~- 580 (760)
.++...+...+..... -++.+...+..+...|-...|..+++++++. . -++.-.|..+|.....
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 9999888877765433 3455666666666667677777777776653 2 2222333333322211
Q ss_pred ----------------------cCCH------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cCCHHHHHHH
Q 004340 581 ----------------------LEDF------ENGIRSYQSALRVDARHYNSWYGLGMVYLR--------QEKFEFSEHH 624 (760)
Q Consensus 581 ----------------------~g~~------e~A~~~~~~al~~~p~~~~a~~~la~~~~~--------~g~~~~A~~~ 624 (760)
.+.. --|.+++-..+++... ...|+++|.-|++ +.+-..|+.+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~~~WyNLGinylr~f~~l~et~~~~~~Ai~c 805 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-MYPWYNLGINYLRYFLLLGETMKDACTAIRC 805 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-cchHHHHhHHHHHHHHHcCCcchhHHHHHHH
Confidence 1111 1233344444433222 5678888887766 2334578999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 004340 625 FRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (760)
Q Consensus 625 l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 704 (760)
+.++++...++...|..+|.+ ...|.+.-|..+|-+.+...|.....|.++|.++.+..+++-|...|.++..++|.+.
T Consensus 806 ~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl 884 (1238)
T KOG1127|consen 806 CKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL 884 (1238)
T ss_pred HHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhh
Confidence 999999999999999999988 6668899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 705 GVYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 705 ~~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
..|...+.+....|+.-++...|.....+
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el 913 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDEL 913 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHh
Confidence 99999999999999998998888874443
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.73 E-value=3e-15 Score=165.03 Aligned_cols=317 Identities=15% Similarity=0.112 Sum_probs=215.8
Q ss_pred HHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHHHH-HHHHHHHHccCHHH
Q 004340 442 MSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRAS--PYSLEGMD-IYSTVLYHLKEDMK 518 (760)
Q Consensus 442 ~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~-~la~~l~~l~~~~~ 518 (760)
+...|+|+.+.+.|++...........|+.++.+|...|.-..|+...+..+... |.+...+. ....|....+..++
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee 412 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE 412 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence 3445667777777776665555555666666666666666666666666666555 44433332 22333444455555
Q ss_pred HHHHHHHHHHhC-----CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 519 LSYLAQELITTD-----RLAPQSWCAMGNCYSLQ-----------KDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE 582 (760)
Q Consensus 519 a~~~~~~~l~~~-----p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g 582 (760)
+..++++++..- -..+..+..+|.+|..+ ..+.++++.++++++.+|.++.+.+.++.-|...+
T Consensus 413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R 492 (799)
T KOG4162|consen 413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQR 492 (799)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 555555555521 12344555555554321 12345555566666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------
Q 004340 583 DFENGIRSYQSALRV-DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS-------------------------- 635 (760)
Q Consensus 583 ~~e~A~~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------------------------- 635 (760)
+.+.|+...+++++. ..++..+|..++.++...+++.+|+...+.++...|++
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 666666666666665 33445556666666655555555555544444333221
Q ss_pred -----------------------------------------------------------------------------HHH
Q 004340 636 -----------------------------------------------------------------------------SVI 638 (760)
Q Consensus 636 -----------------------------------------------------------------------------~~~ 638 (760)
...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Q 004340 639 MSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN 718 (760)
Q Consensus 639 ~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 718 (760)
|...+..+.+.+..++|..++.++-.++|..+..|+..|.++...|+.++|.+.|..++.++|+++.....+|.++.+.|
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 55667788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHH--HHHHHHhcCCChHHHHHHHH-HHHhcCCCCcccc
Q 004340 719 MHEKAML--HFGLALDLKPSATDVATIKA-AIEKLHVPDEIED 758 (760)
Q Consensus 719 ~~~~A~~--~~~~al~l~p~~~~a~~~l~-~l~~l~~~deaee 758 (760)
+..-|.. .+..+++++|.+.++|..++ .++..|+.++|.|
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 9988888 99999999999999999887 5788888776643
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=6.8e-15 Score=164.82 Aligned_cols=297 Identities=13% Similarity=0.137 Sum_probs=245.6
Q ss_pred HHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHH
Q 004340 438 EGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDM 517 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~ 517 (760)
.|..+..+|+.++|+..+-.+...+|.+...|..++....++|++.+|.-+|.+|++.+|.+.......+.++...|+..
T Consensus 179 L~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~ 258 (895)
T KOG2076|consen 179 LGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK 258 (895)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH
Confidence 34444678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004340 518 KLSYLAQELITTDRLAP-----QSWCAMGNCYSLQKDHETALKNFQRAVQL--NPRFAYGHTLCGHEYVALEDFENGIRS 590 (760)
Q Consensus 518 ~a~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~kal~~--~p~~~~a~~~la~~~~~~g~~e~A~~~ 590 (760)
.|...+.+++...|... ......+..+...++.+.|++.++.++.. +......+..++.++.....++.|...
T Consensus 259 ~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 259 RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 99999999999999322 22334577888888889999999999983 223345677889999999999999988
Q ss_pred HHHHHHh--CCC--------------------------CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH
Q 004340 591 YQSALRV--DAR--------------------------HYNS-WYGLGMVYLRQEKFEFSEHHFRMAFQISP-HSSVIMS 640 (760)
Q Consensus 591 ~~~al~~--~p~--------------------------~~~a-~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~ 640 (760)
....... .++ +..+ ...++.+.++.+...+++..+..--...+ +++..+.
T Consensus 339 i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~ 418 (895)
T KOG2076|consen 339 IVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYL 418 (895)
T ss_pred HHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHH
Confidence 7776551 000 1122 44555555556666666655543222223 4577899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Q 004340 641 YLGTAMHALKRSGEAIEMMEKAILADKK-NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNM 719 (760)
Q Consensus 641 ~la~~~~~~g~~~eAl~~l~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 719 (760)
.++.++...|++.+|+.+|..+....+. +..+|+.+|.||..+|.+++|++.|++++...|++.++...|+.++.++|+
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN 498 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence 9999999999999999999999887654 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 004340 720 HEKAMLHFGLALDLK 734 (760)
Q Consensus 720 ~~~A~~~~~~al~l~ 734 (760)
.++|.+.++....-+
T Consensus 499 ~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 499 HEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHHHhcccCCC
Confidence 999999999877444
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=3e-14 Score=142.74 Aligned_cols=234 Identities=14% Similarity=0.122 Sum_probs=148.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHY----NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTV 509 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p----~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 509 (760)
..+..|..+-..|..+.||.+-+.+.+... ....++..+|+-|...|-++.|...|....+.......++..+..+
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~I 150 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNI 150 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 356677777889999999999988765432 2456889999999999999999999999887655555666666666
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004340 510 LYHLKEDMKLSYLAQELITTDRLA-----PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDF 584 (760)
Q Consensus 510 l~~l~~~~~a~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~ 584 (760)
|....++.+|+....++.+..+.. +..++.++..+....+.+.|+..+.+|++.+|....+-..+|.++...|+|
T Consensus 151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch
Confidence 666666666666666666655543 244555555555566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004340 585 ENGIRSYQSALRVDARH-YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (760)
Q Consensus 585 e~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al 663 (760)
++|++.++.+++.+|.. .++.-.|..+|..+|+.++.+..+.++.+..+.. .+...++..-....-.+.|..++.+-+
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 66666666666655553 3344555555666666666666665555555442 223334444444444455555555555
Q ss_pred HhCCC
Q 004340 664 LADKK 668 (760)
Q Consensus 664 ~~~p~ 668 (760)
...|.
T Consensus 310 ~r~Pt 314 (389)
T COG2956 310 RRKPT 314 (389)
T ss_pred hhCCc
Confidence 55554
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.72 E-value=6.9e-15 Score=159.28 Aligned_cols=324 Identities=13% Similarity=0.081 Sum_probs=242.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 513 (760)
..|.++...+..++|.+.+...+.++...|..+..+...|..+..+|+-++|..+...++..++....+|..+|.++..-
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 34566777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 514 KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQS 593 (760)
Q Consensus 514 ~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~ 593 (760)
+++++|+.+|..++..+|++...|..++.+..+.++++-....-.+.+++.|..-..|...+..+...|++..|....+.
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888777665
Q ss_pred HHHhC---CCC---------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 594 ALRVD---ARH---------------------------------------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (760)
Q Consensus 594 al~~~---p~~---------------------------------------~~a~~~la~~~~~~g~~~~A~~~l~~al~~ 631 (760)
..+.. |.. .......|.++++++++++|...|...+..
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 55432 111 112234577888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhC--------------------------------------------
Q 004340 632 SPHSSVIMSYLGTAMHALKRSGEAI-EMMEKAILAD-------------------------------------------- 666 (760)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~~eAl-~~l~~al~~~-------------------------------------------- 666 (760)
+|++...+..+-.++..-.+--+++ ..|...-+..
T Consensus 249 nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S 328 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRS 328 (700)
T ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHH
Confidence 9999776655544443111111111 1111111000
Q ss_pred -------------------------------------CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 004340 667 -------------------------------------KKN--PLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVY 707 (760)
Q Consensus 667 -------------------------------------p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 707 (760)
|-. ...++.++.-+...|+++.|..+++.++...|...+.|
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 000 13456688888999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHhcCCCCccc
Q 004340 708 ALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVA-TIKAAIEKLHVPDEIE 757 (760)
Q Consensus 708 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~-~~l~~l~~l~~~deae 757 (760)
...|+++...|++++|..+++++.++|-.+.-+. .....+-+..+.++|+
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 9999999999999999999999999987776544 2333444555555554
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.71 E-value=5e-15 Score=163.34 Aligned_cols=237 Identities=17% Similarity=0.172 Sum_probs=198.6
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----
Q 004340 496 SPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITT--------DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL---- 563 (760)
Q Consensus 496 ~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~---- 563 (760)
+|........++..+...|+++.|..+++.+++. .|.-......+|.+|...+++.+|+..|++|+.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4555666777888888888888888888888877 4444455556999999999999999999999986
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 564 ----NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA--------RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (760)
Q Consensus 564 ----~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p--------~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~ 631 (760)
+|..+.++.+||.+|...|++++|..++++|+++.. .-...+..++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 344567789999999999999999999999998732 22456788899999999999999999999887
Q ss_pred C--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 632 S--------PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD--------KKNPLPMYQKANILLSLEKFDEALEVLEE 695 (760)
Q Consensus 632 ~--------p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 695 (760)
. +.-+..+.++|.+|..+|++++|.++|++|+.+. +.....+..+|..|.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3 2335678999999999999999999999999874 22346788899999999999999999999
Q ss_pred HHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 696 LKEYA-------PRESGVYALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 696 al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
++.+. |+....+.+|+.+|..+|+++.|+++.++++.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 88752 34457799999999999999999999999884
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.70 E-value=4.3e-15 Score=163.89 Aligned_cols=241 Identities=18% Similarity=0.177 Sum_probs=204.3
Q ss_pred ccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 004340 458 LPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA--------SPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITT 529 (760)
Q Consensus 458 ~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~ 529 (760)
.-...|....+...+|..|..+|+|++|+..|+.+++. .|.-...+..+|.+|..++++.+|..+|++++.+
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556777888889999999999999999999999998 4444445556999999999999999999999875
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 530 --------DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN--------PRFAYGHTLCGHEYVALEDFENGIRSYQS 593 (760)
Q Consensus 530 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~--------p~~~~a~~~la~~~~~~g~~e~A~~~~~~ 593 (760)
+|.-+.++..||.+|...|++++|..++++|+.+. |+-...+..++.++...+++++|..++++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 33445788999999999999999999999999862 33445678899999999999999999999
Q ss_pred HHHhC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHH
Q 004340 594 ALRVD-----A---RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS--------PHSSVIMSYLGTAMHALKRSGEAIE 657 (760)
Q Consensus 594 al~~~-----p---~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~--------p~~~~~~~~la~~~~~~g~~~eAl~ 657 (760)
++++. + .-...+.++|.+|..+|++++|.+.|++++++. +.....+..+|..+.+.+++.+|.+
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 99862 2 235678999999999999999999999999874 2335578899999999999999999
Q ss_pred HHHHHHHh----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 658 MMEKAILA----DKKN---PLPMYQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 658 ~l~~al~~----~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
.|.++..+ .|++ ...+.+||.+|..+|++++|+++.++++.
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99998876 3443 46788999999999999999999999885
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.69 E-value=5.6e-14 Score=153.50 Aligned_cols=301 Identities=13% Similarity=0.014 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcccccCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 004340 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHY---NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTV 509 (760)
Q Consensus 433 l~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p---~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 509 (760)
+.....|..+...|+.++|...+.++....+ +........|.+++..|++++|...++++++.+|.+..++.. +..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 3445566777778889998888887665544 456678888999999999999999999999999999877664 445
Q ss_pred HHHccC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004340 510 LYHLKE----DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFE 585 (760)
Q Consensus 510 l~~l~~----~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e 585 (760)
+...+. ...+...+......+|.....+..+|.++...|++++|+..+++++++.|++..++..+|.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 554444 3344444444345667777888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH---HHHHHHHHcCChHHHH
Q 004340 586 NGIRSYQSALRVDARHY----NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS--SVIMS---YLGTAMHALKRSGEAI 656 (760)
Q Consensus 586 ~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~---~la~~~~~~g~~~eAl 656 (760)
+|+.++++++...|... ..|..+|.++...|++++|+..|++++...|.. ..... .+...+...|....+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999999999876432 356789999999999999999999998766622 21111 2223333344433333
Q ss_pred HH--H-HHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHcCCHHH
Q 004340 657 EM--M-EKAILADKK--NPLPMYQKANILLSLEKFDEALEVLEELKEYAPR---------ESGVYALMGKIYKRRNMHEK 722 (760)
Q Consensus 657 ~~--l-~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---------~~~~~~~la~~~~~~g~~~~ 722 (760)
.+ + .......+. ........+.++...|+.++|...++.+...... ...+....+.++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 33 1 111111122 2233346888889999999999999988664322 35667888999999999999
Q ss_pred HHHHHHHHHhcC
Q 004340 723 AMLHFGLALDLK 734 (760)
Q Consensus 723 A~~~~~~al~l~ 734 (760)
|++.+..++.+.
T Consensus 326 A~~~L~~al~~a 337 (355)
T cd05804 326 ALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999999999765
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.65 E-value=1.8e-14 Score=161.78 Aligned_cols=306 Identities=13% Similarity=0.084 Sum_probs=225.3
Q ss_pred cCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 004340 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQ 524 (760)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~ 524 (760)
..+...|+..|-+++..++..+.++..+|.+|....|...|.++|.+|.++++.+.++....+..+....+.+.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999888888888887777776654
Q ss_pred HHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004340 525 ELITTDRL--APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY 602 (760)
Q Consensus 525 ~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~ 602 (760)
..-+..|. ....|..+|.+|...+++..|+..|+.++..+|.+...|..+|.+|...|.+..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 44444443 2245556666677777777777777777777777777777777777777777777777777777776666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------------------
Q 004340 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQIS-------------------------------------------------- 632 (760)
Q Consensus 603 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~-------------------------------------------------- 632 (760)
.+.+..+......|+|.+|+..+...+...
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 666666666666666655555444332210
Q ss_pred --------------------CC-----------------------------------------CHHHHHHHHHHHHH---
Q 004340 633 --------------------PH-----------------------------------------SSVIMSYLGTAMHA--- 648 (760)
Q Consensus 633 --------------------p~-----------------------------------------~~~~~~~la~~~~~--- 648 (760)
|+ ++..|+++|.-|++
T Consensus 711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHH
Confidence 00 02235566655554
Q ss_pred -----cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH
Q 004340 649 -----LKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKA 723 (760)
Q Consensus 649 -----~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A 723 (760)
+.+...|+.++.+++++..++...|..+|.+ ...|++.-|..+|-+.+...|.....|.++|.++.+..+++-|
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 1233467888888888888888888888877 5567888888888888888888888899999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHH-HhcC
Q 004340 724 MLHFGLALDLKPSATDVATIKAAI-EKLH 751 (760)
Q Consensus 724 ~~~~~~al~l~p~~~~a~~~l~~l-~~l~ 751 (760)
...|.++..++|.+...+...+.+ +.+|
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence 999999999999998766655533 4444
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.62 E-value=2.3e-13 Score=147.64 Aligned_cols=271 Identities=15% Similarity=0.167 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSL 546 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~ 546 (760)
..++..+.-.++.++|.+.++..+.+++..|.+.+.+...|..+..+|+..+|..+....+..|+.+...|..+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 45677777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 547 QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFR 626 (760)
Q Consensus 547 ~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 626 (760)
..+|++|+++|..|+.++|++..+|..++.+..++++++-....-.+.++..|.....|...+..+...|++..|...++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhC---CCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 627 MAFQIS---PHS-----SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 627 ~al~~~---p~~-----~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
...+.. |.. .........++.+.|.+++|++.+..--...-+........|.++.+++++++|...|...+.
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 877654 322 234556677788889999998887765443333444556689999999999999999999999
Q ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCh
Q 004340 699 YAPRESGVYALMGKIYKRRNMHEKAM-LHFGLALDLKPSA 737 (760)
Q Consensus 699 ~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~p~~ 737 (760)
.+|++...+..+-.++.+-.+.-+++ ..|...-+..|..
T Consensus 248 rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 248 RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 99999988888888886444444555 6666655555544
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.61 E-value=7.4e-13 Score=144.66 Aligned_cols=272 Identities=9% Similarity=-0.110 Sum_probs=208.7
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 004340 462 HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS---LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWC 538 (760)
Q Consensus 462 ~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~ 538 (760)
+|+.+.++..+|.++...|+.+.|...+.++.+..|.+ .+.....+.+++..++.+++...++++++.+|.+..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68899999999999999999999999999999887754 456777888999999999999999999999999998877
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 539 AMGNCYSLQK----DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (760)
Q Consensus 539 ~la~~~~~~g----~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~ 614 (760)
. +..+...| ....+.+.+......+|....++..+|.++...|++++|+..++++++..|++..++..+|.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 5 55555444 444444444443356777778888999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-HHHH----HHHHHHHHcCC
Q 004340 615 QEKFEFSEHHFRMAFQISPHSS----VIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP-LPMY----QKANILLSLEK 685 (760)
Q Consensus 615 ~g~~~~A~~~l~~al~~~p~~~----~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~-~~~~----~la~~~~~~g~ 685 (760)
.|++++|+.++++++...|..+ ..+..+|.++...|++++|+..|++++...|... .... .+...+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999999877443 3466899999999999999999999987666222 1111 22233333443
Q ss_pred HHHHHHH--H-HHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004340 686 FDEALEV--L-EELKEYAPR--ESGVYALMGKIYKRRNMHEKAMLHFGLALDLK 734 (760)
Q Consensus 686 ~~eA~~~--l-~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 734 (760)
...+..+ + .......+. ........+.++...|+.++|...++.+....
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3333332 1 111111121 22333468888889999999999998876643
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.60 E-value=1.5e-13 Score=140.96 Aligned_cols=191 Identities=14% Similarity=0.088 Sum_probs=155.8
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Q 004340 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA---YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYN-- 603 (760)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~---~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~-- 603 (760)
.++..+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++..|++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456778999999999999999999999999999988765 57889999999999999999999999999987765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Q 004340 604 -SWYGLGMVYLRQ--------EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (760)
Q Consensus 604 -a~~~la~~~~~~--------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~ 674 (760)
+++.+|.++... |++++|+..|++++..+|++...+..+..+.... ... .....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~~-------------~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NRL-------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HHH-------------HHHHH
Confidence 688899998876 7899999999999999999876653333221110 100 12245
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 675 QKANILLSLEKFDEALEVLEELKEYAPRE---SGVYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 675 ~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
.+|.+++..|++.+|+..+++++...|+. +.+++.+|.++..+|++++|..+++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 78889999999999999999999987754 588999999999999999999998887776653
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=8.2e-12 Score=126.30 Aligned_cols=288 Identities=15% Similarity=0.103 Sum_probs=222.5
Q ss_pred ChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH---
Q 004340 447 RCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLA--- 523 (760)
Q Consensus 447 ~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~--- 523 (760)
.|++||++|.+++..+|+-.-+-..+|.||+++.-|+-+.+.+.--++..|+..-+....+..++++-.-..+..-.
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 68999999999999999888888889999999999999999999999999999988888887777664322221111
Q ss_pred -----------HHH--------------HHhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 524 -----------QEL--------------ITTDR----LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLC 574 (760)
Q Consensus 524 -----------~~~--------------l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~l 574 (760)
+.+ ++.-| .-|++...+...|..+++..+|+.+.+. ++|..+.-|...
T Consensus 246 adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilK 322 (557)
T KOG3785|consen 246 ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILK 322 (557)
T ss_pred HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHH
Confidence 111 11111 2367888999999999999999988764 799999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH---hC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004340 575 GHEYVALEDFENGIRSYQSALR---VD------ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA 645 (760)
Q Consensus 575 a~~~~~~g~~e~A~~~~~~al~---~~------p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 645 (760)
|.++...|+--...+.++-|-+ +- -+.......+|.+++...++++.+.++...-...-++....+++|.+
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQA 402 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQA 402 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHH
Confidence 9999998876555444444332 21 12233456778888888899999999988888888888889999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHH
Q 004340 646 MHALKRSGEAIEMMEKAILADKK-NPLPMYQKANILLSLEKFDEALEVLEELKEYAP-RESGVYALMGKIYKRRNMHEKA 723 (760)
Q Consensus 646 ~~~~g~~~eAl~~l~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A 723 (760)
+...|.+.+|.+.|-+.-...-. .......+|+||...++++-|...+-+. -.| +....+..+|...++.+++--|
T Consensus 403 k~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999776544422 3344556999999999999998777543 122 2345667788888999999999
Q ss_pred HHHHHHHHhcCCChHH
Q 004340 724 MLHFGLALDLKPSATD 739 (760)
Q Consensus 724 ~~~~~~al~l~p~~~~ 739 (760)
.+.|+..-.++|....
T Consensus 481 aKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 481 AKAFDELEILDPTPEN 496 (557)
T ss_pred HHhhhHHHccCCCccc
Confidence 9999999899988654
No 83
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=1.3e-11 Score=127.80 Aligned_cols=301 Identities=12% Similarity=-0.010 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Q 004340 429 LLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY-SLEGMDIYS 507 (760)
Q Consensus 429 l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la 507 (760)
....-..+.+|..-+..|+|.+|+....+..+..+.....+..-+++.-++||++.|-.++.++-+..++ ........+
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 3445567778888889999999999999988888888888888899999999999999999999998554 345667788
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HH-------HHHHHHHHHH
Q 004340 508 TVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF-AY-------GHTLCGHEYV 579 (760)
Q Consensus 508 ~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~-~~-------a~~~la~~~~ 579 (760)
.++...+++..|..-.+++++..|.+++++.....+|...|++.+...++.+..+..--. .+ +|..+-.-..
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999988887653221 11 2222222222
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004340 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMM 659 (760)
Q Consensus 580 ~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l 659 (760)
..+..+.-..+.+..-..-..++.....++.-+...|+.++|.+..+.+++..-+.. ....++ ...-+++..=++..
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~ 317 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAA 317 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHH
Confidence 222233322344443333445677888889999999999999999999998865533 222222 24567888889999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 660 EKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 660 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
++.++..|+++..+..+|.++++.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.+++++.+
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998874 778899999999999999999999998853
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=2.6e-12 Score=143.73 Aligned_cols=293 Identities=14% Similarity=0.029 Sum_probs=226.2
Q ss_pred HHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc---
Q 004340 438 EGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK--- 514 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~--- 514 (760)
++..+...|++++|++.+.+....-.+...++-..|.++..+|++++|...|..+++.+|++...+..+..++....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 45556788999999999999888888999999999999999999999999999999999999999999988884433
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 515 --EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETAL-KNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSY 591 (760)
Q Consensus 515 --~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~ 591 (760)
.......+++++....|...... .+...+..-.++...+ .++...+. ...+..+..+-.+|....+.+-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~--KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLR--KGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 46677888888888887643322 2222222222344333 34444443 345666666766666544443333333
Q ss_pred HHHHHh---------------CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 004340 592 QSALRV---------------DARH--YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGE 654 (760)
Q Consensus 592 ~~al~~---------------~p~~--~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e 654 (760)
...+.. .|.. ..+++.+++.|...|++++|+++++++++..|..++.+...|.++...|++.+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 333321 1111 24568899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CC-------CHHHHHHHHHHHHHcCCHHHHHH
Q 004340 655 AIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA--PR-------ESGVYALMGKIYKRRNMHEKAML 725 (760)
Q Consensus 655 Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~-------~~~~~~~la~~~~~~g~~~~A~~ 725 (760)
|.+.++.|-.++..+-.+-...+..+.+.|+.++|.+.+......+ |. ..+.....|.+|.+.|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999888889999999999999999988776544 21 12344567999999999999999
Q ss_pred HHHHHHhc
Q 004340 726 HFGLALDL 733 (760)
Q Consensus 726 ~~~~al~l 733 (760)
.|..+.+.
T Consensus 327 ~~~~v~k~ 334 (517)
T PF12569_consen 327 RFHAVLKH 334 (517)
T ss_pred HHHHHHHH
Confidence 99888764
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=5.8e-13 Score=136.58 Aligned_cols=193 Identities=16% Similarity=0.084 Sum_probs=139.8
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 461 KHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAM 540 (760)
Q Consensus 461 ~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~l 540 (760)
..+..+..++.+|..++..|+|++|+..|++++...|.++. ...+++.+
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------------------------------~~~a~~~l 76 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-------------------------------AEQAQLDL 76 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-------------------------------HHHHHHHH
Confidence 44567889999999999999999999999999998887532 13456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 541 GNCYSLQKDHETALKNFQRAVQLNPRFAY---GHTLCGHEYVAL--------EDFENGIRSYQSALRVDARHYNSWYGLG 609 (760)
Q Consensus 541 a~~~~~~g~~~~A~~~~~kal~~~p~~~~---a~~~la~~~~~~--------g~~e~A~~~~~~al~~~p~~~~a~~~la 609 (760)
|.++...|++++|+..|+++++..|+++. +++.+|.++... |++++|+..|++++..+|.+..++..+.
T Consensus 77 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 77 AYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 77777777777777777777777776554 567777777665 7788888888888888887765543332
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCH
Q 004340 610 MVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQKANILLSLEKF 686 (760)
Q Consensus 610 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~---~~~~~~la~~~~~~g~~ 686 (760)
.+....+ . . ......+|.++...|++.+|+..+++++...|+. +.+++.+|.++..+|++
T Consensus 157 ~~~~~~~----~---~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 157 RMDYLRN----R---L----------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHHH----H---H----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 2211100 0 0 1123467788888888888888888888886654 46788888888888888
Q ss_pred HHHHHHHHHHHHHCC
Q 004340 687 DEALEVLEELKEYAP 701 (760)
Q Consensus 687 ~eA~~~l~~al~~~p 701 (760)
++|..+++.+....|
T Consensus 220 ~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 220 DLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHhhCC
Confidence 888888877766554
No 86
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=2.5e-11 Score=125.73 Aligned_cols=288 Identities=15% Similarity=0.124 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Q 004340 468 VLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRL-APQSWCAMGNCYSL 546 (760)
Q Consensus 468 ~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~-~~~~~~~la~~~~~ 546 (760)
....-|..-+..|+|.+|.+...+.-+..+...-++..-+.+..+.|+.+.+..++.++.+..++ .-......+.+...
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34455667778899999999999998888888888888899999999999999999999998544 45677889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HH-----HHHHHHHHHHHcCCH
Q 004340 547 QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YN-----SWYGLGMVYLRQEKF 618 (760)
Q Consensus 547 ~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~---~~-----a~~~la~~~~~~g~~ 618 (760)
.|+++.|..-..++++..|.++.+......+|...|++.+...+..+.-+..--+ .. +|.++-.-....+..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999998887753322 11 222222222222222
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 619 EFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 619 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
+.-..+++..-..-..++.+...++.-+..+|+.++|.++.+++++..-+.. ....+ -....+++..=++..++.++
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHHHHHH
Confidence 3323355554444556788888999999999999999999999998765433 22111 23456788999999999999
Q ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCcccc
Q 004340 699 YAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEKLHVPDEIED 758 (760)
Q Consensus 699 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l~~~deaee 758 (760)
..|+++..+..||.++.+.+.+.+|..+|+.+++..|+..+...+..+++++|++.+|++
T Consensus 323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 999999999999999999999999999999999999999987777779999999887753
No 87
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=3.2e-13 Score=126.96 Aligned_cols=121 Identities=18% Similarity=0.193 Sum_probs=56.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004340 590 SYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669 (760)
Q Consensus 590 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~ 669 (760)
+|+++++++|++ ++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|.+
T Consensus 15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 344444444432 23344444444444444444444444444444444444444444444444444444444444444
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 004340 670 PLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKI 713 (760)
Q Consensus 670 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~ 713 (760)
+.+++.+|.++..+|++++|+..|++++.+.|+++..+..++.+
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 44444444444444444444444444444444444444444443
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.52 E-value=1.5e-12 Score=129.13 Aligned_cols=134 Identities=14% Similarity=0.111 Sum_probs=92.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHcCC--HHHHHH
Q 004340 615 QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANIL-LSLEK--FDEALE 691 (760)
Q Consensus 615 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~-~~~g~--~~eA~~ 691 (760)
.++.++++..++++++.+|++...|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 455666677777777777777777777777777777777777777777777777777777777653 55555 477777
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004340 692 VLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIE 748 (760)
Q Consensus 692 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~ 748 (760)
.++++++.+|+++.+++.+|.++...|++++|+.+|++++++.|.+.+-..++..|+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~ 188 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESIN 188 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 777777777777777777777777777777777777777776666655444444443
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.4e-11 Score=129.70 Aligned_cols=318 Identities=13% Similarity=0.035 Sum_probs=222.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 513 (760)
..+.....+...++|++|+....+++...|++..++...-.++.+.++|++|+.+.++-....-.+ ...+..+.|.+++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHc
Confidence 344566667889999999999999999999999999999999999999999995554433222222 1226788999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------------------------
Q 004340 514 KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR--------------------------- 566 (760)
Q Consensus 514 ~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~--------------------------- 566 (760)
++.++|...++ ..++.+.......|.++++.|+|++|+..|+..++.+.+
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 99999999887 566777788899999999999999999999988653221
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 567 ----FAYGHTLCGHEYVALEDFENGIRSYQSALRVD--------ARH-------YNSWYGLGMVYLRQEKFEFSEHHFRM 627 (760)
Q Consensus 567 ----~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~--------p~~-------~~a~~~la~~~~~~g~~~~A~~~l~~ 627 (760)
..+.+++.|.++...|+|.+|++.+++++++. ... ......++.++..+|+-++|...|..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33456788899999999999999999995431 111 22567788999999999999999999
Q ss_pred HHHhCCCCHHHH----HH---------------------------------------------HHHHHHHcCChHHHHHH
Q 004340 628 AFQISPHSSVIM----SY---------------------------------------------LGTAMHALKRSGEAIEM 658 (760)
Q Consensus 628 al~~~p~~~~~~----~~---------------------------------------------la~~~~~~g~~~eAl~~ 658 (760)
.++.+|.+.... ++ .+.+.+..+..+.+.+.
T Consensus 250 ~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 250 IIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 988877653211 11 11111111222222221
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH--------H
Q 004340 659 MEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE-SGVYALMGKIYKRRNMHEKAMLHFG--------L 729 (760)
Q Consensus 659 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~--------~ 729 (760)
....-...|....--........+...+.+|.+++....+.+|.. ..+.+.++.+...+|+++.|++.+. .
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 111111112111111222333333337889999999999888876 6788999999999999999999999 5
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCCc
Q 004340 730 ALDLKPSATDVATIKAAIEKLHVPDE 755 (760)
Q Consensus 730 al~l~p~~~~a~~~l~~l~~l~~~de 755 (760)
..+.......+..+...+.+.+..+.
T Consensus 410 ~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 410 ILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred hhhhccChhHHHHHHHHHHhccCCcc
Confidence 55555444444556666666655443
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.51 E-value=3.7e-13 Score=126.51 Aligned_cols=124 Identities=10% Similarity=0.144 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 555 KNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (760)
Q Consensus 555 ~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 634 (760)
.+|+++++++|+. +..+|.++...|++++|+.+|++++..+|.+..+|..+|.++...|++++|+..|++++..+|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3455555555543 3345555555666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 004340 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (760)
Q Consensus 635 ~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~ 681 (760)
++.+++.+|.++...|++++|+..|++++...|+++..+..++.+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 66666666666666666666666666666666666555555555443
No 91
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.51 E-value=2.1e-13 Score=140.05 Aligned_cols=296 Identities=21% Similarity=0.232 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT----GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYS 507 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 507 (760)
.+.+-.+|.++.+.|+|...+..|+.+++...++ ..+|..+|.+|+.+++|++|+++-..=+.+..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar---------- 86 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLAR---------- 86 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHH----------
Confidence 4555568999999999999999999998876654 34788999999999999999988654332210
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHc
Q 004340 508 TVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNP------RFAYGHTLCGHEYVAL 581 (760)
Q Consensus 508 ~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p------~~~~a~~~la~~~~~~ 581 (760)
.+.-.-..+...-.+|+.+.-.|.|++|+.+..+-+.+.. ....+++++|.+|...
T Consensus 87 ------------------~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhak 148 (639)
T KOG1130|consen 87 ------------------LLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAK 148 (639)
T ss_pred ------------------HhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhc
Confidence 0000111123334566666666666666666555544321 1234566666666655
Q ss_pred CC--------------------HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004340 582 ED--------------------FENGIRSYQSALRVDARH------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (760)
Q Consensus 582 g~--------------------~e~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 635 (760)
|+ ++.|.++|..-+++.... ..++-+||..|+-+|+|+.|+..-+.-+.+....
T Consensus 149 Gk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef 228 (639)
T KOG1130|consen 149 GKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF 228 (639)
T ss_pred ccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh
Confidence 43 344555555555543221 2356677888888889999888877766654322
Q ss_pred ------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--
Q 004340 636 ------SVIMSYLGTAMHALKRSGEAIEMMEKAILAD----KK--NPLPMYQKANILLSLEKFDEALEVLEELKEYAP-- 701 (760)
Q Consensus 636 ------~~~~~~la~~~~~~g~~~eAl~~l~~al~~~----p~--~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-- 701 (760)
-.++.++|.++.-.|+++.|+++|+..+.+. .. .+...|.+|..|.-..++++|+.++.+-+.+..
T Consensus 229 GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 229 GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL 308 (639)
T ss_pred hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999998876542 22 345678899999999999999999998877643
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCh--HHHHHHHHHHHhcCCCCc
Q 004340 702 ----RESGVYALMGKIYKRRNMHEKAMLHFGLALDLK-----PSA--TDVATIKAAIEKLHVPDE 755 (760)
Q Consensus 702 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-----p~~--~~a~~~l~~l~~l~~~de 755 (760)
....+++.||..|..+|..++|+.+.++.+++. +.. .....+...+..+|..+.
T Consensus 309 ~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 309 EDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 356789999999999999999999888877632 221 112234445566666544
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=5e-12 Score=125.30 Aligned_cols=124 Identities=17% Similarity=0.303 Sum_probs=100.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHH
Q 004340 581 LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAM-HALKR--SGEAIE 657 (760)
Q Consensus 581 ~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~-~~~g~--~~eAl~ 657 (760)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 566778888888888888888888888888888888888888888888888888888888888764 56666 478888
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 004340 658 MMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (760)
Q Consensus 658 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 704 (760)
.++++++.+|+++.+++.+|..++..|++++|+.+|+++++..|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 88888888888888888888888888888888888888888776543
No 93
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=3.4e-10 Score=118.78 Aligned_cols=302 Identities=11% Similarity=0.070 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 004340 431 GLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVL 510 (760)
Q Consensus 431 ~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 510 (760)
.+-.++.-|.--..++++..|..+|++++..+..+..+|...+.+-++......|..++++++.+-|.-...|+.+..+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34455556666678889999999999999999999999999999999999999999999999999999889999999888
Q ss_pred HHccCHHHHHHHHHHHHHhCCCC--------------------------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004340 511 YHLKEDMKLSYLAQELITTDRLA--------------------------------PQSWCAMGNCYSLQKDHETALKNFQ 558 (760)
Q Consensus 511 ~~l~~~~~a~~~~~~~l~~~p~~--------------------------------~~~~~~la~~~~~~g~~~~A~~~~~ 558 (760)
..+|+..-|..++++-++..|+. ...|...+..-...|...-|...|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 89999999998888888887752 1234444444445555555666666
Q ss_pred HHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------------------
Q 004340 559 RAVQLNPRFA---YGHTLCGHEYVALEDFENGIRSYQSAL---------------------------------------- 595 (760)
Q Consensus 559 kal~~~p~~~---~a~~~la~~~~~~g~~e~A~~~~~~al---------------------------------------- 595 (760)
+|++.-.++. ..+...|..-..+.+++.|..+|+-|+
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 5554322211 112222333333344444444443333
Q ss_pred ----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHH-HHHHcCChHHHHHHHHH
Q 004340 596 ----RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV---------IMSYLGT-AMHALKRSGEAIEMMEK 661 (760)
Q Consensus 596 ----~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~---------~~~~la~-~~~~~g~~~eAl~~l~~ 661 (760)
+.+|.++++|+.+..+-...|+.+.-.+.|++|+..-|.... +|.+++. .-....+.+.+.++|+.
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 234555666666666666667777777777777665554211 1111111 11233455555555555
Q ss_pred HHHhCCCC----hHHHHHHHHHH---------------------------------HHcCCHHHHHHHHHHHHHHCCCCH
Q 004340 662 AILADKKN----PLPMYQKANIL---------------------------------LSLEKFDEALEVLEELKEYAPRES 704 (760)
Q Consensus 662 al~~~p~~----~~~~~~la~~~---------------------------------~~~g~~~eA~~~l~~al~~~p~~~ 704 (760)
++++-|.. ..+|...|... .++++++....+|++.++..|.+-
T Consensus 392 ~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c 471 (677)
T KOG1915|consen 392 CLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENC 471 (677)
T ss_pred HHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence 55555532 22333333333 344455555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 705 GVYALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 705 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
.+|...|.+-..+|+.+.|...|+-|++
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 5555555555555555555555555544
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1.4e-10 Score=117.52 Aligned_cols=168 Identities=14% Similarity=0.113 Sum_probs=118.2
Q ss_pred HHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHH
Q 004340 438 EGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDM 517 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~ 517 (760)
-|+.++..|+|++|+..|.-+.+.+.-++.++..+|.+++.+|.|.+|..+-.++ |..+-....+-.+...+++..
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHH
Confidence 4566788999999999999988877778889999999999999999998876654 556655555555556666655
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 518 KLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597 (760)
Q Consensus 518 ~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~ 597 (760)
+...+-+.+-+. .+-...+|.+++..-.|++|++.|++.+..+|+....-..+|.+|.++.-++-+.+.+.-.++.
T Consensus 139 ~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 139 RILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 555443333221 2444556666666667777777777777777777666677777777777777777777777776
Q ss_pred CCCCHHHHHHHHHHHH
Q 004340 598 DARHYNSWYGLGMVYL 613 (760)
Q Consensus 598 ~p~~~~a~~~la~~~~ 613 (760)
.|+..-+....+..++
T Consensus 215 ~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 215 FPDSTIAKNLKACNLF 230 (557)
T ss_pred CCCcHHHHHHHHHHHh
Confidence 6666555544444443
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.44 E-value=4.1e-11 Score=139.66 Aligned_cols=224 Identities=13% Similarity=0.052 Sum_probs=136.6
Q ss_pred ccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004340 460 HKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCA 539 (760)
Q Consensus 460 ~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~ 539 (760)
...|.+..++..++..|...+++++|++.++.+++..|+....++..|.++...++..++..+ .++...+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~------- 95 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ------- 95 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc-------
Confidence 445778888888888888888999999988888888888888888888877777775555443 33333322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004340 540 MGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFE 619 (760)
Q Consensus 540 la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 619 (760)
..++ .+++++-..+...+.+..+++.+|.+|-.+|+.++|...|+++++.+|+++.+..++|..|... +.+
T Consensus 96 -------~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 96 -------NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -------ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 2233 3333333333334444445555555555555555555555555555555555555555555555 555
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH--------------------HHHHHHH
Q 004340 620 FSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLP--------------------MYQKANI 679 (760)
Q Consensus 620 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~--------------------~~~la~~ 679 (760)
+|+.++.+|+.. +...++|.++.+++.+.+..+|.+... +.-+-..
T Consensus 167 KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 167 KAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 555555555433 333344444444444444444443322 2223356
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 680 LLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYK 715 (760)
Q Consensus 680 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~ 715 (760)
|...++|++++.+|+.+++.+|.+..+...++.||.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 667777888888888888888887777888887776
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.43 E-value=1.3e-11 Score=136.03 Aligned_cols=224 Identities=15% Similarity=0.171 Sum_probs=200.1
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 462 HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMG 541 (760)
Q Consensus 462 ~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la 541 (760)
-|........+|.++...|-...|+.+|++. +.|.....||..+|+..+|..+..+.++ .|.++..|+.+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 3455667788999999999999999999976 4566678899999999999999988888 677788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004340 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS 621 (760)
Q Consensus 542 ~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 621 (760)
.+....--|++|.++.+.. ++.+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|
T Consensus 465 Dv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 8877776666666665543 3457778888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 004340 622 EHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (760)
Q Consensus 622 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 700 (760)
.++|..++...|++..+|++++.+|.+.++..+|...+++|++.+-.+..+|-+.-.+..+.|.+++|++.+.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998899999999999999999999999999998763
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.43 E-value=2.1e-11 Score=120.34 Aligned_cols=176 Identities=16% Similarity=0.071 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004340 553 ALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (760)
Q Consensus 553 A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~ 632 (760)
+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+......+|...+..|++.+|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 555555555667777777 6677777777777777777777666677776666667777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004340 633 PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGK 712 (760)
Q Consensus 633 p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~ 712 (760)
|++..+|..+|.+|.+.|++++|...|.+++++.|.++.+..++|..|+-.|+++.|..++..+....+.+..+..+++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777666667777777777
Q ss_pred HHHHcCCHHHHHHHHHH
Q 004340 713 IYKRRNMHEKAMLHFGL 729 (760)
Q Consensus 713 ~~~~~g~~~~A~~~~~~ 729 (760)
+....|++++|...-.+
T Consensus 211 ~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 211 VVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhhcCChHHHHhhccc
Confidence 77777777777665443
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.2e-10 Score=121.50 Aligned_cols=300 Identities=10% Similarity=0.060 Sum_probs=189.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Q 004340 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (760)
Q Consensus 436 l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~ 515 (760)
|.+||.+++.++.++|+..++. .++.+..++...|.++|++|+|++|+.+|+.+.+-+-++.+........... .
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~---~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a 157 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKG---LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--A 157 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhc---ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--H
Confidence 7899999999999999999993 3444557888899999999999999999999988665544432222111100 0
Q ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCC-------CHHHHHHHHHHHH
Q 004340 516 DMKLSYLAQELITTDRL-APQSWCAMGNCYSLQKDHETALKNFQRAVQL--------NPR-------FAYGHTLCGHEYV 579 (760)
Q Consensus 516 ~~~a~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~kal~~--------~p~-------~~~a~~~la~~~~ 579 (760)
...+. ..+.+...|. +-+.+|+.|.++...|+|.+|++.+++++.+ +.. ...+...++.++.
T Consensus 158 ~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 158 ALQVQ--LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred hhhHH--HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 00000 1222223333 5578889999999999999999999999543 111 1235677888999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHH-------------------------------------------------HHHHHH
Q 004340 580 ALEDFENGIRSYQSALRVDARHYNS-------------------------------------------------WYGLGM 610 (760)
Q Consensus 580 ~~g~~e~A~~~~~~al~~~p~~~~a-------------------------------------------------~~~la~ 610 (760)
.+|+.++|...|...++.++.+... +.+.+.
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888776543211 111111
Q ss_pred HHHHcC----------------------------------CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHH
Q 004340 611 VYLRQE----------------------------------KFEFSEHHFRMAFQISPHS-SVIMSYLGTAMHALKRSGEA 655 (760)
Q Consensus 611 ~~~~~g----------------------------------~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA 655 (760)
+.+..+ .+.+|.+++....+.+|.. ..+...++.+.+.+|+++.|
T Consensus 316 L~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 111111 2334444444444445554 44556666667777777777
Q ss_pred HHHHHHHHHh-------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHcCCHH
Q 004340 656 IEMMEKAILA-------DKKNPLPMYQKANILLSLEKFDEALEVLEELKEY-------APRESGVYALMGKIYKRRNMHE 721 (760)
Q Consensus 656 l~~l~~al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-------~p~~~~~~~~la~~~~~~g~~~ 721 (760)
++.+...+.. ....|.+-..+-..++..++-+-|..++.+++.- .+..-..+..++....+.|+-+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 7777632211 1112333333444455555555555555555432 1122344566777778889999
Q ss_pred HHHHHHHHHHhcCCChHHHHH
Q 004340 722 KAMLHFGLALDLKPSATDVAT 742 (760)
Q Consensus 722 ~A~~~~~~al~l~p~~~~a~~ 742 (760)
+|...+++.++.+|++.++..
T Consensus 476 ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHH
Confidence 999999999999999988655
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.42 E-value=2.2e-11 Score=120.20 Aligned_cols=172 Identities=15% Similarity=0.217 Sum_probs=139.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004340 523 AQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY 602 (760)
Q Consensus 523 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~ 602 (760)
+-.....+|.+..+ ..++..+...|+-+.+..+..++....|.+......+|......|++..|+..++++..+.|+++
T Consensus 56 l~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~ 134 (257)
T COG5010 56 LGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW 134 (257)
T ss_pred HHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh
Confidence 33445566777777 77778888888888888888887777888877777788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 004340 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLS 682 (760)
Q Consensus 603 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~ 682 (760)
++|..+|.+|.+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.+...
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL 214 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888777788888888888888
Q ss_pred cCCHHHHHHHHHH
Q 004340 683 LEKFDEALEVLEE 695 (760)
Q Consensus 683 ~g~~~eA~~~l~~ 695 (760)
.|++++|.....+
T Consensus 215 ~g~~~~A~~i~~~ 227 (257)
T COG5010 215 QGDFREAEDIAVQ 227 (257)
T ss_pred cCChHHHHhhccc
Confidence 8888888776654
No 100
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=2.2e-10 Score=111.88 Aligned_cols=175 Identities=14% Similarity=-0.002 Sum_probs=114.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004340 539 AMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKF 618 (760)
Q Consensus 539 ~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 618 (760)
.+..+....|+.+.|..++++.....|....+....|..+...|.+++|+++|+..++-+|.+...+.....+.-.+|+.
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc
Confidence 34444555666666666666666666666666666666666666666677666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 004340 619 EFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE---KFDEALEVLEE 695 (760)
Q Consensus 619 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~~ 695 (760)
-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|.+++-+| +++-|.++|.+
T Consensus 137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666677677777777777777777777666666666666666666666555 45566667777
Q ss_pred HHHHCCCCHHHHHHHHHH
Q 004340 696 LKEYAPRESGVYALMGKI 713 (760)
Q Consensus 696 al~~~p~~~~~~~~la~~ 713 (760)
++++.|.+..+++.+-.+
T Consensus 217 alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 217 ALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHhChHhHHHHHHHHHH
Confidence 777666555555444333
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.41 E-value=2.4e-11 Score=140.77 Aligned_cols=168 Identities=11% Similarity=0.008 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRA---VQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMV 611 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~ka---l~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~ 611 (760)
+.+..+-.+....+....+...+-++ ....|.++.++..||.+....|.+++|...++.++++.|++..++..++.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~ 129 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRG 129 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 33444444444444443333333333 333556666666666666666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004340 612 YLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALE 691 (760)
Q Consensus 612 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 691 (760)
+.+.+++++|+..+++++..+|+++..++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|..
T Consensus 130 L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 130 VKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHCCC
Q 004340 692 VLEELKEYAPR 702 (760)
Q Consensus 692 ~l~~al~~~p~ 702 (760)
.|+++++...+
T Consensus 210 ~~~~a~~~~~~ 220 (694)
T PRK15179 210 VLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHhhCc
Confidence 66666665443
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.40 E-value=3.8e-11 Score=139.22 Aligned_cols=148 Identities=7% Similarity=-0.050 Sum_probs=105.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004340 523 AQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY 602 (760)
Q Consensus 523 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~ 602 (760)
+.......|.++++++.||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 34444556666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004340 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (760)
Q Consensus 603 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~ 670 (760)
.+++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++....-.
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 77777777777777777777777777777777777777777777777777777777777776654433
No 103
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.40 E-value=6.9e-12 Score=116.66 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=96.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 623 HHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 623 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
+.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677777777777777778888888888888888888888877877788888888888888888888888888888887
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004340 703 ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 703 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
++..++.+|.+|...|++++|+.+|+++++++|++.....+..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 126 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKE 126 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 7888888888888888888888888888888887776554444
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.39 E-value=4.3e-12 Score=132.92 Aligned_cols=258 Identities=15% Similarity=0.070 Sum_probs=121.2
Q ss_pred HHHHHHhcCChHHHHHHHhcccccCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Q 004340 438 EGYRMSCMYRCKDALDVYLKLPHKHY-NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~~~~p-~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~ 516 (760)
.....+-.|+|..++..+. +....+ ........+.+++..+|+++..+.-.... .+....++..++..+..
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~---- 78 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSS---- 78 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCT----
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhC----
Confidence 3445577889999987776 323332 35566778888888888887666544321 12223333333333322
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN--PRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~--p~~~~a~~~la~~~~~~g~~e~A~~~~~~a 594 (760)
.++-+.++..++..+... +.++......|.++...|++++|++.+.+.
T Consensus 79 ------------------------------~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~ 128 (290)
T PF04733_consen 79 ------------------------------PSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG 128 (290)
T ss_dssp ------------------------------STTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT
T ss_pred ------------------------------ccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 223333333332222111 112223333344444445555554444332
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChHH
Q 004340 595 LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK--RSGEAIEMMEKAILADKKNPLP 672 (760)
Q Consensus 595 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g--~~~eAl~~l~~al~~~p~~~~~ 672 (760)
.+.+.......+|...++++.|.+.++.+.+.+.+...+....+++....| .+.+|..+|++..+..+.++..
T Consensus 129 -----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~ 203 (290)
T PF04733_consen 129 -----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKL 203 (290)
T ss_dssp -----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHH
T ss_pred -----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHH
Confidence 234444444455555555555555555554444443333333333333333 3555555555544444444555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCChH
Q 004340 673 MYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMH-EKAMLHFGLALDLKPSAT 738 (760)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~l~p~~~ 738 (760)
+..+|.+++.+|+|++|.+.+++++..+|.++.++.+++.+...+|+. +.+.+++.+....+|+++
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 555555555555555555555555555555555555555555555554 334445555455555544
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.9e-10 Score=111.04 Aligned_cols=172 Identities=12% Similarity=0.056 Sum_probs=118.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004340 508 TVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENG 587 (760)
Q Consensus 508 ~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A 587 (760)
.+....++.+-|..+++++....|.+..+-...|..+...|.+++|+++|+..++.+|.+..++...-.+...+|+.-+|
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHH
Confidence 33334444444444555544445555556666666677777777777777777777777777776666666777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH
Q 004340 588 IRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK---RSGEAIEMMEKAIL 664 (760)
Q Consensus 588 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~eAl~~l~~al~ 664 (760)
++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..+|.+++-.| +++-|.++|.++++
T Consensus 140 Ik~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 140 IKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777665 45667777777777
Q ss_pred hCCCChHHHHHHHHH
Q 004340 665 ADKKNPLPMYQKANI 679 (760)
Q Consensus 665 ~~p~~~~~~~~la~~ 679 (760)
++|.+..+++.+..+
T Consensus 220 l~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 220 LNPKNLRALFGIYLC 234 (289)
T ss_pred hChHhHHHHHHHHHH
Confidence 777666666554443
No 106
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=3.2e-10 Score=127.05 Aligned_cols=267 Identities=19% Similarity=0.155 Sum_probs=207.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCY 544 (760)
Q Consensus 465 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~ 544 (760)
...+++....++.+.|++++|++++++....-.+....+...|.++..+|+.++|...+..+++.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HhcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004340 545 SLQK-----DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGI-RSYQSALRVDARHYNSWYGLGMVYLRQEKF 618 (760)
Q Consensus 545 ~~~g-----~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~-~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 618 (760)
.... +.+.-..+|+......|....+.. +...+..-.+|.... .++...+.. +-+..+..+-.+|....+.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKA 159 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHH
Confidence 4333 567778888888888876543322 222222223444333 344444433 3345555555555533333
Q ss_pred HHHHHHHHHHHHh---------------CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 004340 619 EFSEHHFRMAFQI---------------SPHS--SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (760)
Q Consensus 619 ~~A~~~l~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~ 681 (760)
+-....+...... .|.. .++++.++..|...|++++|+++++++|+..|..++.|...|.+|-
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK 239 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3223333332211 1111 2456888999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004340 682 SLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLK 734 (760)
Q Consensus 682 ~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 734 (760)
..|++.+|.+.++.+..+++.+-.+-...+..+.+.|+.++|.+.+.....-+
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999988776544
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.38 E-value=5e-10 Score=137.90 Aligned_cols=304 Identities=15% Similarity=0.054 Sum_probs=227.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccccCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH-----H
Q 004340 436 LGEGYRMSCMYRCKDALDVYLKLPHKHY---------NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL-----E 501 (760)
Q Consensus 436 l~~a~~~~~~g~~~eAi~~l~~~~~~~p---------~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~ 501 (760)
+..+..++..|++++|...+..+..... ....+...+|.++...|++++|..+++++++..+... .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3456666788999999998887543211 1345566678899999999999999999998655422 3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------C
Q 004340 502 GMDIYSTVLYHLKEDMKLSYLAQELITTDRLA------PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR--------F 567 (760)
Q Consensus 502 ~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~--------~ 567 (760)
+...++.++...|++.+|...+.+++...... ..++..+|.++...|++++|..++++++..... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 45667888889999999999999888653321 245677899999999999999999999886211 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 004340 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDAR-----HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIM 639 (760)
Q Consensus 568 ~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~ 639 (760)
...+..+|.++...|++++|...+.+++..... ....+..+|.++...|++++|...+.++..+.... ....
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 234567888999999999999999999876321 24456678999999999999999999997763322 1111
Q ss_pred ----HHHHHHHHHcCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHH
Q 004340 640 ----SYLGTAMHALKRSGEAIEMMEKAILADKKNPL----PMYQKANILLSLEKFDEALEVLEELKEYAP------RESG 705 (760)
Q Consensus 640 ----~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~~al~~~p------~~~~ 705 (760)
......+...|+.+.|..++.......+.... .+..++.++...|++++|+..+++++.... ....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11224455678999999998776543322221 246789999999999999999999988632 2346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004340 706 VYALMGKIYKRRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 706 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
++..+|.++...|+.++|...+.+++++......
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 7889999999999999999999999997765543
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=5.9e-11 Score=117.76 Aligned_cols=283 Identities=15% Similarity=0.121 Sum_probs=182.6
Q ss_pred HHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH
Q 004340 440 YRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKL 519 (760)
Q Consensus 440 ~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a 519 (760)
+.+++..+|.+||+++..-.+..|.+--.+..+|.||+...+|..|..+|++.-...|.........+..++..+.+.+|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 44466678999999999999999999999999999999999999999999999999999999899999999999988888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004340 520 SYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA 599 (760)
Q Consensus 520 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p 599 (760)
......+.+.+....+....-+.+.+..+++..+....++.- ..+.+......|.+.++.|+++.|++-|+.+++...
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 876655544322233344444555555566655555444321 113455566666666677777777777777776666
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------------------------HHHHHHHHHHHHHcC
Q 004340 600 RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI----SPHS-------------------------SVIMSYLGTAMHALK 650 (760)
Q Consensus 600 ~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~-------------------------~~~~~~la~~~~~~g 650 (760)
-.+..-++++.++++.++++.|+++..+.++. .|.- ..+++..+.++++.|
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~ 255 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR 255 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence 66666666777777777777776666555443 2211 223444556666666
Q ss_pred ChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004340 651 RSGEAIEMMEKAILAD--KKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAML 725 (760)
Q Consensus 651 ~~~eAl~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 725 (760)
+++.|.+.+...--.. .-+|..+.+++..-. .+++.+..+-+.-.+.++|--++.+.++-.+|.+..-|+.|..
T Consensus 256 n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 256 NYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred cHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHH
Confidence 6666665543321111 113444444443322 2445555555555666666555555555555555555555543
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.37 E-value=3.6e-11 Score=132.58 Aligned_cols=225 Identities=16% Similarity=0.166 Sum_probs=199.1
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 497 PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGH 576 (760)
Q Consensus 497 p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~ 576 (760)
|.....-..++.++..+|-...|...++++ +.|.....||...|+..+|..+..+-++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 344556678889999999999999888774 7888899999999999999999999888 6667788888887
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004340 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAI 656 (760)
Q Consensus 577 ~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl 656 (760)
+.....-|++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|.
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 777766666666666543 34577778888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 657 EMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 657 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
+.|..++.++|++..+|.+++.+|...|+-.+|...+.++++.+-++..+|.+...+..+.|.+++|++.|.+.+.+..+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999886443
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.36 E-value=5.2e-11 Score=138.80 Aligned_cols=219 Identities=9% Similarity=0.052 Sum_probs=168.3
Q ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 495 ASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLC 574 (760)
Q Consensus 495 ~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~l 574 (760)
.+|.+..++..++..+...++++++..++...++..|+...+|+.+|.++...+++.+|.-. .++..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----------- 92 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS----------- 92 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence 35666777777777777777777777777777777777777777777777666665555444 33332
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 004340 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGE 654 (760)
Q Consensus 575 a~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e 654 (760)
.....++ .+++++-..+...+.+..+++.+|.||.++|++++|...|+++++.+|+++.+++++|..|... +.++
T Consensus 93 ---~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 93 ---FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred ---cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 2223334 4455555555556666789999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH--------------------HHHHHHHH
Q 004340 655 AIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGV--------------------YALMGKIY 714 (760)
Q Consensus 655 Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~--------------------~~~la~~~ 714 (760)
|++++.+|+.. ++..++|.++.+++++.+...|++... +.-+-.+|
T Consensus 168 A~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 168 AITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 99999999876 667778999999999999988876543 22233778
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004340 715 KRRNMHEKAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 715 ~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
...+++++++.+++.+++.+|++.-+..-+.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 8889999999999999999999876655333
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.35 E-value=9.6e-12 Score=130.27 Aligned_cols=211 Identities=13% Similarity=0.088 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA--RHYNSWYGLGMVY 612 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p--~~~~a~~~la~~~ 612 (760)
+..+.+.+++..+|+++..+.-.... .+....+...++..+...++-+.++..++..+.... .+.......|.++
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 45566778888888888766554332 233345566667666655677777777766543322 2344556667888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--CHHHHH
Q 004340 613 LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE--KFDEAL 690 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g--~~~eA~ 690 (760)
...|++++|++.+.+. .+.+.......++...++++.|.+.++.+-+.+.+...+....+++....| ++.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 8899999999988764 667888888999999999999999999998888777767777777777766 699999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH-HhcCCC
Q 004340 691 EVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAI-EKLHVP 753 (760)
Q Consensus 691 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l-~~l~~~ 753 (760)
..|+++.+..+..+.++..++.++..+|++++|.+.+.+++..+|+++++...+..+ ..+|+.
T Consensus 188 y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 188 YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 999998888788899999999999999999999999999999999999977766654 445555
No 112
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=9e-09 Score=108.30 Aligned_cols=315 Identities=14% Similarity=0.078 Sum_probs=243.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC--HHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYN---TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS--LEGMDIY 506 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~---~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l 506 (760)
+-.++.-|..-...|+..-|..+|.++++.-.+ ...++...|..-..++.++.|..+|+-+++.-|.+ .+.+..+
T Consensus 207 v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~ 286 (677)
T KOG1915|consen 207 VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKY 286 (677)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 334555666667788888888888887664433 33344455555566788999999999999988876 3333344
Q ss_pred HHHHHHccCH---HHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHH
Q 004340 507 STVLYHLKED---MKLS-----YLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA-------YGH 571 (760)
Q Consensus 507 a~~l~~l~~~---~~a~-----~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~-------~a~ 571 (760)
...-.+.|+. ++++ .-++..+..+|.+-++|+..-.+-...|+.+.-.+.|++|+..-|... ++|
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHH
Confidence 4444445553 2222 257888999999999999999999999999999999999998876532 223
Q ss_pred HHHHHHH---HHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 572 TLCGHEY---VALEDFENGIRSYQSALRVDARH----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGT 644 (760)
Q Consensus 572 ~~la~~~---~~~g~~e~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 644 (760)
..+-.++ ....+.+.+.+.|+.++++-|.. ...|...|....++.+...|.+.+-.|+-.+|.+- ++..+..
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIe 445 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIE 445 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHH
Confidence 3333332 34789999999999999998864 67899999999999999999999999999999854 4455667
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-H-HHHHHHHHHHHHcCCHHH
Q 004340 645 AMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE-S-GVYALMGKIYKRRNMHEK 722 (760)
Q Consensus 645 ~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~-~~~~~la~~~~~~g~~~~ 722 (760)
+-.++++++....+|++.++..|.+..+|...|.+-..+|+.+.|..+|+-|+....-+ + .+|......-...|.+++
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 77888999999999999999999999999999999999999999999999998765433 2 334555666678899999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH
Q 004340 723 AMLHFGLALDLKPSATDVATIKAAIE 748 (760)
Q Consensus 723 A~~~~~~al~l~p~~~~a~~~l~~l~ 748 (760)
|...|++.|+..+... ++.-.+..+
T Consensus 526 aR~LYerlL~rt~h~k-vWisFA~fe 550 (677)
T KOG1915|consen 526 ARALYERLLDRTQHVK-VWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHhcccch-HHHhHHHHh
Confidence 9999999999988776 444444443
No 113
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.33 E-value=4.4e-11 Score=111.23 Aligned_cols=116 Identities=22% Similarity=0.311 Sum_probs=70.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004340 590 SYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669 (760)
Q Consensus 590 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~ 669 (760)
.|++++..+|.+..+.+.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555555665555566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Q 004340 670 PLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (760)
Q Consensus 670 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 705 (760)
+..++.+|.++...|++++|+..|+++++..|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 666666666666666666666666666666655443
No 114
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.30 E-value=1.4e-11 Score=126.75 Aligned_cols=239 Identities=19% Similarity=0.187 Sum_probs=182.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 004340 469 LSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK 548 (760)
Q Consensus 469 l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g 548 (760)
+..-|.-+++.|++...+.+|+.+++....+...+ ..+|..+|++|+..+
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tL------------------------------SAIYsQLGNAyfyL~ 69 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTL------------------------------SAIYSQLGNAYFYLK 69 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHH------------------------------HHHHHHhcchhhhHh
Confidence 34567888999999999999999999877654332 246778899999999
Q ss_pred CHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcC
Q 004340 549 DHETALKNFQRAVQL----N--PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA------RHYNSWYGLGMVYLRQE 616 (760)
Q Consensus 549 ~~~~A~~~~~kal~~----~--p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g 616 (760)
+|++|+++-.--+.+ . -..+..--++|.++...|.|++|+.++.+-+.+.. ....++|++|.+|...|
T Consensus 70 DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 70 DYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence 999999876544332 1 12344556799999999999999999988776532 23578999999998776
Q ss_pred C--------------------HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-
Q 004340 617 K--------------------FEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN- 669 (760)
Q Consensus 617 ~--------------------~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~- 669 (760)
+ ++.|.++|..-+++.... ..++-++|..|+-+|+|+.|+..-+.-+.+....
T Consensus 150 k~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG 229 (639)
T KOG1130|consen 150 KCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG 229 (639)
T ss_pred cccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh
Confidence 4 344555555544442221 3457778899999999999999988887765432
Q ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 670 -----PLPMYQKANILLSLEKFDEALEVLEELKEYA----P--RESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 670 -----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~----p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
..++.++|.++.-+|+++.|+++|+..+.+. . ..+...|.||..|....++++|+.|+.+-+.+...-
T Consensus 230 DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 230 DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL 308 (639)
T ss_pred hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999876543 2 245678999999999999999999999887765443
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=3.5e-09 Score=130.41 Aligned_cols=321 Identities=9% Similarity=-0.023 Sum_probs=224.0
Q ss_pred HHHHHHhcCChHHHHHHHhccccc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---------CHHHHHHHH
Q 004340 438 EGYRMSCMYRCKDALDVYLKLPHK-HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY---------SLEGMDIYS 507 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~~~-~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la 507 (760)
.+..+...|++..+...+..+... ....+......+.+++..|++++|...+..+.+..+. ........+
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 445566778888877777766322 1234455667788888999999999999888765322 123444567
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Q 004340 508 TVLYHLKEDMKLSYLAQELITTDRLAP-----QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGH 576 (760)
Q Consensus 508 ~~l~~l~~~~~a~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~------~~a~~~la~ 576 (760)
.++...|++.++..++++++...+... .++..+|.++...|++++|...+.+++...... ..++..+|.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 777888999999999999887544322 355678888899999999999999998753321 245567888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHH
Q 004340 577 EYVALEDFENGIRSYQSALRVDAR--------HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH-----SSVIMSYLG 643 (760)
Q Consensus 577 ~~~~~g~~e~A~~~~~~al~~~p~--------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~-----~~~~~~~la 643 (760)
++...|++++|...+++++..... ....+..+|.++...|++++|...+++++..... ....+..+|
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 999999999999999998875221 1234567788888999999999999998776321 234566688
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCh---HHHH----HHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHH
Q 004340 644 TAMHALKRSGEAIEMMEKAILADKKNP---LPMY----QKANILLSLEKFDEALEVLEELKEYAPRES----GVYALMGK 712 (760)
Q Consensus 644 ~~~~~~g~~~eAl~~l~~al~~~p~~~---~~~~----~la~~~~~~g~~~eA~~~l~~al~~~p~~~----~~~~~la~ 712 (760)
.++...|++++|...+.++..+..... .... .....+...|+.+.|..++.......+... ..+..++.
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 899999999999999999877633221 1111 122445567899999888877554322222 22567899
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCh------HHHHHHHH-HHHhcCCCCcccc
Q 004340 713 IYKRRNMHEKAMLHFGLALDLKPSA------TDVATIKA-AIEKLHVPDEIED 758 (760)
Q Consensus 713 ~~~~~g~~~~A~~~~~~al~l~p~~------~~a~~~l~-~l~~l~~~deaee 758 (760)
++...|++++|...+++++...... ..+...++ .+...|+.++|.+
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999998853221 12222333 4577777766643
No 116
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=5.1e-11 Score=119.66 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 004340 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE 684 (760)
Q Consensus 605 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g 684 (760)
+..-|.-+++.++|++|+..|.+||+++|.++..|++.+.+|.++|.++.|++.++.++.++|.+..+|..+|.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 33344444444445555555555555555555555555555555555555555555555555444444444555555555
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Q 004340 685 KFDEALEVLEELKEYAPRESGVYALMGKIYKRRNM 719 (760)
Q Consensus 685 ~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 719 (760)
++++|++.|+++++++|++......|..+-.++++
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 55555544555555554444444444444444333
No 117
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=7.6e-11 Score=118.41 Aligned_cols=119 Identities=24% Similarity=0.371 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~ 614 (760)
+.+-.-|+-+...++|.+|+..|.+||+++|.++..|.+.|.+|.++|+++.|++.++.++.++|....+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 45667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 004340 615 QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSG 653 (760)
Q Consensus 615 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (760)
+|++++|++.|+++++++|++..++..|..+-.+++...
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988888887777776655
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.23 E-value=1.9e-10 Score=106.45 Aligned_cols=107 Identities=7% Similarity=-0.025 Sum_probs=85.0
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 004340 629 FQIS-PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVY 707 (760)
Q Consensus 629 l~~~-p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 707 (760)
..+. ++..+..+.+|..++..|++++|...|+-+..++|.+...|+++|.++..+|+|++|+..|.+++.++|+++..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3445 566667777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 708 ALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 708 ~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
+++|.|+...|+.+.|.+.|+.++....
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 8888888888888888888888887663
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.23 E-value=2.9e-09 Score=113.51 Aligned_cols=152 Identities=15% Similarity=0.126 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 565 PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGT 644 (760)
Q Consensus 565 p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 644 (760)
|....+++..+..++..|++++|+..++..+...|+++..+-..+.++...++..+|.+.+++++..+|..+.++..+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004340 645 AMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAM 724 (760)
Q Consensus 645 ~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 724 (760)
+|.+.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|. ...+..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhCCCHHHHH
Confidence 6666666666666666666666666666666666666666644433 23345555566666666
Q ss_pred HHHHHHHhc
Q 004340 725 LHFGLALDL 733 (760)
Q Consensus 725 ~~~~~al~l 733 (760)
..+..+.+.
T Consensus 446 ~~l~~A~~~ 454 (484)
T COG4783 446 IFLMRASQQ 454 (484)
T ss_pred HHHHHHHHh
Confidence 666666553
No 120
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.23 E-value=6.9e-12 Score=106.30 Aligned_cols=75 Identities=29% Similarity=0.311 Sum_probs=64.5
Q ss_pred hhccchhHHHHHHhhhhcCCCc-hh--hHHHHHHHhhcCCHHHHHHHhccC----CCcchhHHHHHHHHhcCChhHHHHh
Q 004340 14 RYFMYRNAIFLCERLCAEFPSE-VN--LQLLATCYLQNNQAYAAYNILKGT----QMALSRYLFAVACYQMDLLSEAEAA 86 (760)
Q Consensus 14 ~~~~~~~A~flaerl~a~~~~~-~~--~~llA~~~~~~~~~~~a~~~l~~~----~~~~~~yl~a~c~~~l~~~~ea~~~ 86 (760)
+++.|++|+++.|++++..|++ ++ +|.||.|||++|+|++|+.+++.. .++.|+|++|+||+++++|+||+.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5789999999999999999953 44 444599999999999999999654 5679999999999999999999998
Q ss_pred hC
Q 004340 87 LS 88 (760)
Q Consensus 87 l~ 88 (760)
|.
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 84
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.21 E-value=2e-09 Score=114.63 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=142.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 004340 598 DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (760)
Q Consensus 598 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la 677 (760)
.|....++|..+..++..|++++|+..++..+...|+++..+...+.++.+.++.++|.+.+++++..+|..+..+.++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004340 678 NILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAI 747 (760)
Q Consensus 678 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l 747 (760)
.+|.+.|++.+|+..++..+..+|+++..|..||+.|..+|+..+|...+.+.+.+......+...+...
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888776655533
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.17 E-value=7.8e-10 Score=102.47 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=80.5
Q ss_pred HHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004340 527 ITTD-RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSW 605 (760)
Q Consensus 527 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~ 605 (760)
..+. ++.-+..+.+|..++..|++++|.+.|+-+..++|.+...|+.||.++..+|++++|+..|.+++.++|+++.++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3344 555566777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004340 606 YGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (760)
Q Consensus 606 ~~la~~~~~~g~~~~A~~~l~~al~~~ 632 (760)
+.+|.|++..|+.+.|++.|+.++...
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777777777777777777777777765
No 123
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.11 E-value=1.2e-08 Score=104.14 Aligned_cols=300 Identities=16% Similarity=0.099 Sum_probs=224.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC------CHHHHH
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYN---TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY------SLEGMD 504 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~---~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~ 504 (760)
..+..|..++...++++|+..+.+.+..-.+ ...++-.+..++.++|.|++++.+--..+....+ ..+++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888999999999998887654332 3345666778889999999988776554443221 235666
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 004340 505 IYSTVLYHLKEDMKLSYLAQELITTDRLAP-----QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTL 573 (760)
Q Consensus 505 ~la~~l~~l~~~~~a~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~------~~a~~~ 573 (760)
.++..+..+.++.+++.+....+.+....+ .....+|+.+...+.++++++.|++|+.+.... ..++..
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 777777777788888887777776543333 677789999999999999999999999873322 256888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC----CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHH
Q 004340 574 CGHEYVALEDFENGIRSYQSALRVDA----RH------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS------PHSSV 637 (760)
Q Consensus 574 la~~~~~~g~~e~A~~~~~~al~~~p----~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~------p~~~~ 637 (760)
+|..|....|+++|+-+..+|.++.. ++ ..+++.++..+..+|..-.|.++.+++.++. +....
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar 247 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR 247 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999999999988632 22 3467888999999999999999999998763 22345
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHCCC----
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKK------NPLPMYQKANILLSLEKFDE-----ALEVLEELKEYAPR---- 702 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~e-----A~~~l~~al~~~p~---- 702 (760)
.+..+|.+|...|+.+.|..-|+.|...-.. ...++...|.++....-..+ |++.-++++++...
T Consensus 248 c~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K 327 (518)
T KOG1941|consen 248 CLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAK 327 (518)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhh
Confidence 6778999999999999999999999865321 23455566666655444444 88888888776542
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 703 --ESGVYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 703 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
.-..+..++.+|..+|.-++-..++.++-+.
T Consensus 328 ~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 328 LSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 2357888999999999888877777775543
No 124
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.10 E-value=4.3e-07 Score=90.26 Aligned_cols=223 Identities=23% Similarity=0.284 Sum_probs=124.3
Q ss_pred cCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004340 480 VDYLEAERAFTLARRASPYS--LEGMDIYSTVLYHLKEDMKLSYLAQELIT--TDRLAPQSWCAMGNCYSLQKDHETALK 555 (760)
Q Consensus 480 g~~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~l~~~~~a~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~ 555 (760)
+.+..+...+..++...+.. .......+..+...+....+...+..... ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555554442 34444444444555555555544444444 444555556666666666666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 556 NFQRAVQLNPRFAYGHTLCGH-EYVALEDFENGIRSYQSALRVDA---RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (760)
Q Consensus 556 ~~~kal~~~p~~~~a~~~la~-~~~~~g~~e~A~~~~~~al~~~p---~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~ 631 (760)
.+..++...+.........+. ++...|+++.|...|.+++...+ .....+...+..+...++++.|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666666655554444444444 56666666666666666655444 23344444444455556666666666666666
Q ss_pred CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 632 SPH-SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 632 ~p~-~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
.+. ....+..++..+...+++++|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 665 45556666666666666666666666666665554445555555555555566666666666655554
No 125
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=6.9e-09 Score=103.26 Aligned_cols=257 Identities=14% Similarity=0.107 Sum_probs=206.4
Q ss_pred HHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004340 477 FEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKN 556 (760)
Q Consensus 477 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 556 (760)
.+..+|.+|++++..-.+..|.+..++..++.||++..++..|..+++++-...|......+..+..++..+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004340 557 FQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS 636 (760)
Q Consensus 557 ~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 636 (760)
.......+.-.......-+.+.+..+++..+....++.- ..+........|.+.++.|++++|.+-|+.+++...-.+
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 877654322223445556777778888888776665532 125678889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCC-------------------------hHHHHHHHHHHHHcCCHH
Q 004340 637 VIMSYLGTAMHALKRSGEAIEMMEKAILAD----KKN-------------------------PLPMYQKANILLSLEKFD 687 (760)
Q Consensus 637 ~~~~~la~~~~~~g~~~eAl~~l~~al~~~----p~~-------------------------~~~~~~la~~~~~~g~~~ 687 (760)
.+-++++.++++.|+++.|+++..+.++.. |.- .+++...+.++++.|+++
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e 258 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE 258 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence 999999999999999999999988887653 321 145566788899999999
Q ss_pred HHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004340 688 EALEVLEELKEYAPR-----ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 688 eA~~~l~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
.|.+.+.. +.|. +|..+.+++..- ..+++.+..+-+.-.+.++|-..+
T Consensus 259 AA~eaLtD---mPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 259 AAQEALTD---MPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred HHHHHhhc---CCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChH
Confidence 99876643 3332 455666666543 346677777777777777774443
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.09 E-value=2.3e-09 Score=116.45 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 004340 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK 685 (760)
Q Consensus 606 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~ 685 (760)
...|..++..|+|++|+.+|+++++.+|.++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.+|..+|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Q 004340 686 FDEALEVLEELKEYAPRESGVYALMGKIYKRR 717 (760)
Q Consensus 686 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~ 717 (760)
|++|+..|+++++++|+++.+...++.|...+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 66666666666666666666666666665444
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.08 E-value=2e-09 Score=116.92 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Q 004340 639 MSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN 718 (760)
Q Consensus 639 ~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 718 (760)
+...|..++..|+|++|+..|+++++++|.++.+++.+|.+|..+|++++|+..+++++.++|+++.+++.+|.+|..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004340 719 MHEKAMLHFGLALDLKPSATDVATIKAAI 747 (760)
Q Consensus 719 ~~~~A~~~~~~al~l~p~~~~a~~~l~~l 747 (760)
++++|+.+|++++.++|++..+...+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999887766644
No 128
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.05 E-value=6.2e-07 Score=89.11 Aligned_cols=223 Identities=22% Similarity=0.232 Sum_probs=196.6
Q ss_pred cCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004340 514 KEDMKLSYLAQELITTDRL--APQSWCAMGNCYSLQKDHETALKNFQRAVQ--LNPRFAYGHTLCGHEYVALEDFENGIR 589 (760)
Q Consensus 514 ~~~~~a~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~kal~--~~p~~~~a~~~la~~~~~~g~~e~A~~ 589 (760)
+....+...+...+...+. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455566666777777765 478888999999999999999999999997 688888999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004340 590 SYQSALRVDARHYNSWYGLGM-VYLRQEKFEFSEHHFRMAFQISP---HSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (760)
Q Consensus 590 ~~~~al~~~p~~~~a~~~la~-~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~ 665 (760)
.+..++...+.........+. ++...|+++.|...+.+++...| .....+...+..+...+++++|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 999999988877666666666 89999999999999999988776 35566677777788999999999999999999
Q ss_pred CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 666 DKK-NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 666 ~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
.+. ....+..++..+...+++++|+..+..++...|.....+..++..+...+.+++|...+.+++...|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999 68999999999999999999999999999999987788888888888888899999999999999987
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.05 E-value=4.9e-08 Score=99.91 Aligned_cols=182 Identities=12% Similarity=0.082 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 004340 532 LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGH---TLCGHEYVALEDFENGIRSYQSALRVDARH---YNSW 605 (760)
Q Consensus 532 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~---~~la~~~~~~g~~e~A~~~~~~al~~~p~~---~~a~ 605 (760)
..+..++..|..+...|++++|++.|++++...|....+. +.+|.+|+..+++++|+..+++.++..|++ ..++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3567788888888888999999999999988888776554 788888899999999999999999888776 4567
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004340 606 YGLGMVYLRQE---------------K---FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (760)
Q Consensus 606 ~~la~~~~~~g---------------~---~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p 667 (760)
+.+|.++...+ + ..+|+..|++.++..|+...+- +|...+..+-.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHHHH---
Confidence 88887754443 1 2467788888888888764321 11111111100
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 668 KNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE---SGVYALMGKIYKRRNMHEKAMLHFGLA 730 (760)
Q Consensus 668 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 730 (760)
.-..--+..|..|.+.|.|..|+.-++.+++..|+. .++++.++..|..+|..++|..+....
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 011223467888899999999999999999888764 578888999999999999988876543
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.02 E-value=7.3e-08 Score=98.66 Aligned_cols=176 Identities=12% Similarity=0.116 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 004340 566 RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNS---WYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIM 639 (760)
Q Consensus 566 ~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~ 639 (760)
..+..++..|..++..|++++|+..|++++...|....+ .+.+|.+|++.+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356667778888888899999999999988888877544 4788888888899999999998888888776 4467
Q ss_pred HHHHHHHHHcC---------------C---hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 004340 640 SYLGTAMHALK---------------R---SGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (760)
Q Consensus 640 ~~la~~~~~~g---------------~---~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 701 (760)
+.+|.++...+ + ..+|+..|++.++..|+...+ .+|...+..+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---
Confidence 77777654443 1 246777888888888876432 222222211111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH----HHHHHHhcCCCCcccc
Q 004340 702 RESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVAT----IKAAIEKLHVPDEIED 758 (760)
Q Consensus 702 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~----~l~~l~~l~~~deaee 758 (760)
.-..--+.+|..|.+.|.+..|+.-++.+++..|+.+.... +..++..+|..+++.+
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 11223457899999999999999999999999988765433 3345678888877754
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.99 E-value=9.2e-09 Score=92.84 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHH
Q 004340 637 VIMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQKANILLSLEKFDEALEVLEELKEYAPRE---SGVYALM 710 (760)
Q Consensus 637 ~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~l 710 (760)
..++.+|..+...|++++|+..|++++...|++ +.+++.+|.++...|++++|+.+|++++...|+. +.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 345666666666677777777777766666654 3466667777777777777777777777666653 4566777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004340 711 GKIYKRRNMHEKAMLHFGLALDLKPSATDV 740 (760)
Q Consensus 711 a~~~~~~g~~~~A~~~~~~al~l~p~~~~a 740 (760)
|.++...|++++|+.+|+++++..|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 777777777777777777777777766543
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.99 E-value=6e-08 Score=96.86 Aligned_cols=175 Identities=17% Similarity=0.183 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWY 606 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~---~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~---~~a~~ 606 (760)
.+..++..|..++..|++.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|++ ..+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46777888888888888888888888888876654 4667788888888888888888888888887765 35677
Q ss_pred HHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 004340 607 GLGMVYLRQEK-----------FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQ 675 (760)
Q Consensus 607 ~la~~~~~~g~-----------~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~ 675 (760)
.+|.+++.... ..+|+..|+..+...|++..+-. |...+..+-.. -..--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------------A~~~l~~l~~~---la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------------AKKRLAELRNR---LAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH--------------HHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH--------------HHHHHHHHHHH---HHHHHHH
Confidence 77777665421 23555556666666665433211 11110000000 0112345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 004340 676 KANILLSLEKFDEALEVLEELKEYAPRES---GVYALMGKIYKRRNMHEKAM 724 (760)
Q Consensus 676 la~~~~~~g~~~eA~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 724 (760)
+|..|++.|.|..|+..++.+++..|+.. .++..++.+|.++|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 78888888999999999999998888764 56788888888888887544
No 133
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.98 E-value=1.1e-07 Score=100.17 Aligned_cols=210 Identities=16% Similarity=0.216 Sum_probs=117.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 004340 471 QVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDH 550 (760)
Q Consensus 471 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 550 (760)
..|.+|...|+|++|...|.++.+. +...++...+ ...+...+.+|... ++
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~--------------~~~~~~~~~A--------------a~~~~~Aa~~~k~~-~~ 90 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADC--------------YEKLGDKFEA--------------AKAYEEAANCYKKG-DP 90 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHH--------------HHHTT-HHHH--------------HHHHHHHHHHHHHT-TH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHH--------------HHHcCCHHHH--------------HHHHHHHHHHHHhh-CH
Confidence 3577777788888888888777543 2222222222 12334445555444 77
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 004340 551 ETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ-EKFEFSEHHFRMAF 629 (760)
Q Consensus 551 ~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~-g~~~~A~~~l~~al 629 (760)
++|+.+|++++.+ |...|++..| ...+..+|.+|... |++++|+++|++|+
T Consensus 91 ~~Ai~~~~~A~~~--------------y~~~G~~~~a--------------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 91 DEAIECYEKAIEI--------------YREAGRFSQA--------------AKCLKELAEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHHHHHHHH--------------HHHCT-HHHH--------------HHHHHHHHHHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------------HHhcCcHHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777643 4445555544 23344556666666 67777777777776
Q ss_pred HhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 630 QISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP-------LPMYQKANILLSLEKFDEALEVLEEL 696 (760)
Q Consensus 630 ~~~p~~------~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~l~~a 696 (760)
+..... ..++..+|.++.+.|+|++|++.|+++....-+.. ..++..+.+++..|++..|...+++.
T Consensus 143 ~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 143 ELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 652211 23456677777777777777777777766432211 23445666777777777777777777
Q ss_pred HHHCCCC-----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCh
Q 004340 697 KEYAPRE-----SGVYALMGKIYKR--RNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 697 l~~~p~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~al~l~p~~ 737 (760)
...+|.. ..+...|..++.. ...+.+|+..|+..-.+++--
T Consensus 223 ~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 223 CSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp GTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHH
T ss_pred HhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHH
Confidence 7776632 2334444444432 345677777777666665433
No 134
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.97 E-value=7e-08 Score=96.34 Aligned_cols=174 Identities=15% Similarity=0.108 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 004340 499 SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA---PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA---YGHT 572 (760)
Q Consensus 499 ~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~---~a~~ 572 (760)
....++..|..+...|++.+|+..+++++...|.. +.+++.+|.+++..|++++|+..+++.+...|.++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788899999999999999999999999998865 57899999999999999999999999999988764 6888
Q ss_pred HHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004340 573 LCGHEYVALED-----------FENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSY 641 (760)
Q Consensus 573 ~la~~~~~~g~-----------~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 641 (760)
.+|.+++.... ..+|+..|+..+...|+...+- +|...+..+-.. -..--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~~---la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRNR---LAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHHH---HHHHHHH
Confidence 99998877532 3589999999999999864321 111111111000 0112234
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHH
Q 004340 642 LGTAMHALKRSGEAIEMMEKAILADKKNP---LPMYQKANILLSLEKFDEA 689 (760)
Q Consensus 642 la~~~~~~g~~~eAl~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~eA 689 (760)
+|..|.+.|.|..|+..++.+++..|+.. .++..++.+|.++|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 57777777777777777777777777664 4566677777777776644
No 135
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=1.5e-07 Score=110.43 Aligned_cols=220 Identities=14% Similarity=0.079 Sum_probs=168.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 520 SYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL-NPRF----AYGHTLCGHEYVALEDFENGIRSYQSA 594 (760)
Q Consensus 520 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~-~p~~----~~a~~~la~~~~~~g~~e~A~~~~~~a 594 (760)
..-+++++.-+|+....|......+...++.++|.+.+++|+.. ++.. ..+|..+-.....-|.-+...+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 44567777788888888888888888888888888888888763 3322 234555555555566667777788888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChHH
Q 004340 595 LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK--NPLP 672 (760)
Q Consensus 595 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~--~~~~ 672 (760)
.+... ....|..|..+|...+++++|.++|+..++.......+|..+|..+++..+-+.|..++.+|++.-|. +...
T Consensus 1524 cqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1524 CQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred HHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 77543 26677788888888888888888888888888777888888888888888888888888888888877 5666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004340 673 MYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDV 740 (760)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 740 (760)
....|.+-++.|+.+.+...|+..+.-+|...++|..+.+.-.+.|+.+.+...|++++.+.=.-..+
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 77788888888888888888888888888888888888888888888888888888888765444333
No 136
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.96 E-value=1.5e-06 Score=95.13 Aligned_cols=296 Identities=11% Similarity=0.065 Sum_probs=197.6
Q ss_pred HHHHHHhcCChHHHHHHHhcccccCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Q 004340 438 EGYRMSCMYRCKDALDVYLKLPHKHYN--TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~~~~p~--~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~ 515 (760)
-...++.+|+...-...|.+++..-|- ...+|-..-......+-.+-++..|++-++..|... ..+...+...++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~ 184 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccc
Confidence 344456667777777777766554442 223444444444556666677777777777776543 333344444444
Q ss_pred HHHHHHHHHHH------------------------HHhCCCC---------------------HHHHHHHHHHHHhcCCH
Q 004340 516 DMKLSYLAQEL------------------------ITTDRLA---------------------PQSWCAMGNCYSLQKDH 550 (760)
Q Consensus 516 ~~~a~~~~~~~------------------------l~~~p~~---------------------~~~~~~la~~~~~~g~~ 550 (760)
.++|..-+... +..+|+. ...|+.||..|.+.|.+
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 44444332222 2222221 25799999999999999
Q ss_pred HHHHHHHHHHHHhC---CCCHHHHHH------------------------------------------------------
Q 004340 551 ETALKNFQRAVQLN---PRFAYGHTL------------------------------------------------------ 573 (760)
Q Consensus 551 ~~A~~~~~kal~~~---p~~~~a~~~------------------------------------------------------ 573 (760)
++|...|++++..- .++..++..
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 99999999998631 111111100
Q ss_pred --------HHHHHHHcCCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 004340 574 --------CGHEYVALEDFENGIRSYQSALRV-DARH-----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---- 635 (760)
Q Consensus 574 --------la~~~~~~g~~e~A~~~~~~al~~-~p~~-----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---- 635 (760)
+-.+-+..|+..+-+..|..|++. +|.. ...|..+|..|...|+.+.|...|+++.+..-..
T Consensus 345 n~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 345 NPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred CCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 001112234556666666666653 4432 4578899999999999999999999998875332
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILADKK------------------NPLPMYQKANILLSLEKFDEALEVLEELK 697 (760)
Q Consensus 636 ~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~------------------~~~~~~~la~~~~~~g~~~eA~~~l~~al 697 (760)
..+|+..|..-.+..+++.|+++++.|...-.. +..+|..++......|-++.....|++.+
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 567899999999999999999999998754211 12456677777788888888888999998
Q ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 698 EYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 698 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
++.--.|.+..+.|..+....-+++|.+.|++.+.+.+-
T Consensus 505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 887777888888888888888888888888888887643
No 137
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.96 E-value=1.9e-06 Score=89.21 Aligned_cols=295 Identities=14% Similarity=0.064 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKH--YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTV 509 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~--p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 509 (760)
-+..|..|+.....|+-..|.+.-.+..+.- ...+.+...-++...-.|+|+.|.+-|+.++.--....-.+..+-.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 4556677777788888899988887754322 23567777888999999999999999998876333334444444445
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCH---HHHHHHHHHH-HHcC
Q 004340 510 LYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL---NPRFA---YGHTLCGHEY-VALE 582 (760)
Q Consensus 510 l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~---~p~~~---~a~~~la~~~-~~~g 582 (760)
...+|..+.+..+.+++....|.-+.++...-...+..|+++.|+++.+..... .++.. .+-..-+... ...-
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 567889999999999999999999999999999999999999999999876653 33222 1222222222 2245
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-
Q 004340 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEK- 661 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~- 661 (760)
+...|...-..+.++.|+...+-..-+..++..|+..++-.+++.+.+..|.- . ++.+|....--+.++.-+++
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLKRA 318 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHHH
Confidence 68889999999999999999999999999999999999999999999998863 2 23344444333344444444
Q ss_pred --HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 004340 662 --AILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRR-NMHEKAMLHFGLALD 732 (760)
Q Consensus 662 --al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 732 (760)
...+.|++.+..+.++...+..|+|..|..--+.+....|. ..++..|+.+-... |+-.++..++-+++.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 45567999999999999999999999999999999999996 56788888888766 999999999999987
No 138
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.95 E-value=1.9e-06 Score=94.36 Aligned_cols=299 Identities=15% Similarity=0.097 Sum_probs=218.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccccCC---C-----CHHHHHHHHHHHHHcc-------------CHHHHHHHHHHHH
Q 004340 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHY---N-----TGWVLSQVGKAYFEVV-------------DYLEAERAFTLAR 493 (760)
Q Consensus 435 ~l~~a~~~~~~g~~~eAi~~l~~~~~~~p---~-----~~~~l~~la~~~~~~g-------------~~~~A~~~~~~al 493 (760)
+...|..++..|.+++|.++|++.+..-- + +.++.+.--.+...++ +.+-.+..|+.++
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 44556777999999999999998765321 1 2222222222222222 2334455555554
Q ss_pred H------------HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHhcCCHHHHHH
Q 004340 494 R------------ASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELIT-TDRLA-----PQSWCAMGNCYSLQKDHETALK 555 (760)
Q Consensus 494 ~------------~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~-~~p~~-----~~~~~~la~~~~~~g~~~~A~~ 555 (760)
. .+|.+.+.|... +-...++..+.+..+.+++. .+|.. ...|..+|..|...|+.+.|..
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 4 355555555443 33445667777777777665 46653 3689999999999999999999
Q ss_pred HHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHH
Q 004340 556 NFQRAVQLNPR----FAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR------------------HYNSWYGLGMVYL 613 (760)
Q Consensus 556 ~~~kal~~~p~----~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~------------------~~~a~~~la~~~~ 613 (760)
.|+++++..-. .+.+|...|..-+...+++.|+.+.++|...... ...+|..++....
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 99999987432 3578888999999999999999999998764222 1346888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHHHH---HHHHHHHcCCHHH
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK--KNPLPMYQ---KANILLSLEKFDE 688 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p--~~~~~~~~---la~~~~~~g~~~e 688 (760)
..|-++.....|++.+++.--.|.+..+.|..+.....++++.+.|++.+.+.+ .-.++|.. ....-+.--+.+.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 999999999999999999888899999999999999999999999999998864 33344433 2223333447899
Q ss_pred HHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 689 ALEVLEELKEYAPRE--SGVYALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 689 A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
|..+|++|++..|.. ..+|...+.+-.+.|--..|+..|++|-.--+
T Consensus 569 aRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 569 ARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 999999999988732 35677778888888998999999988866433
No 139
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.95 E-value=8.7e-08 Score=108.33 Aligned_cols=146 Identities=11% Similarity=0.090 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 465 TGWVLSQVGKAYFEVVD---YLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMG 541 (760)
Q Consensus 465 ~~~~l~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la 541 (760)
.++-++..|..|+..++ +..|+.+|+++++++|++..++..++.++.....+. +
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-------------~---------- 394 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-------------P---------- 394 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-------------C----------
Confidence 45667778888876655 788999999999999998888877766554321100 0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004340 542 NCYSLQKDHETALKNFQRAVQL--NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFE 619 (760)
Q Consensus 542 ~~~~~~g~~~~A~~~~~kal~~--~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 619 (760)
....+...+.....+++.+ ++..+.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|+++
T Consensus 395 ---~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 395 ---LDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred ---ccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH
Confidence 0001223444444444442 444455555555555556666666666666666665 3556666666666666666
Q ss_pred HHHHHHHHHHHhCCCCHH
Q 004340 620 FSEHHFRMAFQISPHSSV 637 (760)
Q Consensus 620 ~A~~~l~~al~~~p~~~~ 637 (760)
+|++.|++|+.++|.++.
T Consensus 471 eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 471 LAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHhcCCCCch
Confidence 666666666666665553
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.94 E-value=2.5e-08 Score=89.93 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHH
Q 004340 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQK 676 (760)
Q Consensus 603 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~---~~~~~~l 676 (760)
..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+.+|++++...|++ +.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 445666666666666666666666666666554 3456666666666666666666666666666553 4556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Q 004340 677 ANILLSLEKFDEALEVLEELKEYAPRESGV 706 (760)
Q Consensus 677 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 706 (760)
|.++...|++++|+.+++++++..|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666666667777777777666666665543
No 141
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.93 E-value=6.2e-08 Score=94.16 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 004340 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (760)
Q Consensus 605 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~ 681 (760)
++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.++++++...|.+...+..+|.++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3333333333344444444444333333221 2234444444444444444444444444444444444444444444
Q ss_pred HcCCHHHHH
Q 004340 682 SLEKFDEAL 690 (760)
Q Consensus 682 ~~g~~~eA~ 690 (760)
..|+...+.
T Consensus 118 ~~g~~~~a~ 126 (172)
T PRK02603 118 KRGEKAEEA 126 (172)
T ss_pred HcCChHhHh
Confidence 444444433
No 142
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.91 E-value=7e-08 Score=93.79 Aligned_cols=95 Identities=14% Similarity=0.217 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~---~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la 609 (760)
.+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+.+|++++...|.+..++..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34455666666666666666666666666554432 244555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 004340 610 MVYLRQEKFEFSEHHFRM 627 (760)
Q Consensus 610 ~~~~~~g~~~~A~~~l~~ 627 (760)
.++...|+...+...++.
T Consensus 114 ~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred HHHHHcCChHhHhhCHHH
Confidence 555555554444444333
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.91 E-value=1.6e-08 Score=85.79 Aligned_cols=97 Identities=32% Similarity=0.412 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Q 004340 639 MSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN 718 (760)
Q Consensus 639 ~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 718 (760)
++.+|.++...|++++|+..++++++..|.+..+++.+|.++...|++++|++.+++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666777777777
Q ss_pred CHHHHHHHHHHHHhcCC
Q 004340 719 MHEKAMLHFGLALDLKP 735 (760)
Q Consensus 719 ~~~~A~~~~~~al~l~p 735 (760)
++++|..++.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777766666655
No 144
>PRK11906 transcriptional regulator; Provisional
Probab=98.91 E-value=1.1e-07 Score=102.30 Aligned_cols=172 Identities=13% Similarity=0.049 Sum_probs=110.2
Q ss_pred CHH--HHHHHHHHHHHcc---CHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 004340 465 TGW--VLSQVGKAYFEVV---DYLEAERAFTLAR---RASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQS 536 (760)
Q Consensus 465 ~~~--~l~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~ 536 (760)
++| -++..|...+..+ ..+.|+.+|.+++ .++|....++..++.|++...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~---------------------- 309 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA---------------------- 309 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH----------------------
Confidence 445 5677787776655 3456778888888 778877777777776665431
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE 616 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 616 (760)
.+|..- ...+..+|.+..++|++++|.++.++..+|.+....++++.|+..|++++.++|+.+.+|+..|.+....|
T Consensus 310 --~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G 386 (458)
T PRK11906 310 --LHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNE 386 (458)
T ss_pred --HhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Confidence 011111 22344566677777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 004340 617 KFEFSEHHFRMAFQISPHSSVIMSYLGTA-MHALKRSGEAIEMMEK 661 (760)
Q Consensus 617 ~~~~A~~~l~~al~~~p~~~~~~~~la~~-~~~~g~~~eAl~~l~~ 661 (760)
+.++|.+.++++++++|....+-...-.+ .+-....++|+++|-+
T Consensus 387 ~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 387 KIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred CHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 77777777777777777654433222222 3334455666665544
No 145
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.91 E-value=6.5e-07 Score=105.24 Aligned_cols=238 Identities=16% Similarity=0.081 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 004340 482 YLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTD-R----LAPQSWCAMGNCYSLQKDHETALKN 556 (760)
Q Consensus 482 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~-p----~~~~~~~~la~~~~~~g~~~~A~~~ 556 (760)
-.+..+.|++.+.-+|+..-.|..|..-..++++.++|...+++++..- + ..-..|..+-++...-|.-+...+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 3445677888888888888888888888888888888888888888653 2 2235777777777788888889999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 004340 557 FQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH-- 634 (760)
Q Consensus 557 ~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~-- 634 (760)
|++|-+.. +-..+|..|..+|...+.+++|.++|+.+++...+....|..+|..++.+.+-++|...+.+|++.-|.
T Consensus 1520 FeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 99998874 235678889999999999999999999999998888999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Q 004340 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA--PRESGVYALMGK 712 (760)
Q Consensus 635 ~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~~~~la~ 712 (760)
+.......|.+.++.|+.+.+..+|+..+.-.|...+.|.-+...-.+.|+.+.+..+|++++.+. |.....+|..=.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 677888899999999999999999999999999999999999999999999999999999998864 444444444433
Q ss_pred HHHH-cCCH
Q 004340 713 IYKR-RNMH 720 (760)
Q Consensus 713 ~~~~-~g~~ 720 (760)
-|.+ .|+-
T Consensus 1679 eyEk~~Gde 1687 (1710)
T KOG1070|consen 1679 EYEKSHGDE 1687 (1710)
T ss_pred HHHHhcCch
Confidence 3333 3443
No 146
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.89 E-value=5.1e-08 Score=102.65 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=101.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCC------hH
Q 004340 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPH--S----SVIMSYLGTAMHAL-KRSGEAIEMMEKAILADKKN------PL 671 (760)
Q Consensus 605 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~----~~~~~~la~~~~~~-g~~~eAl~~l~~al~~~p~~------~~ 671 (760)
+...+.+|.+. ++++|+.+|++++.+.-. . ..++..+|.+|... |++++|+++|++|+++.... ..
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~ 156 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAE 156 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHH
Confidence 33444444443 677777777777665211 1 34567789999998 99999999999999874322 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh---HHHH
Q 004340 672 PMYQKANILLSLEKFDEALEVLEELKEYAPRE-------SGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA---TDVA 741 (760)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---~~a~ 741 (760)
++..+|.++..+|+|++|++.|+++....-+. ...++..+.|+...||...|...+++....+|.. .+..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 67789999999999999999999998753221 2456678889999999999999999999998854 3444
Q ss_pred HHHHHHHhc
Q 004340 742 TIKAAIEKL 750 (760)
Q Consensus 742 ~~l~~l~~l 750 (760)
.+...++..
T Consensus 237 ~~~~l~~A~ 245 (282)
T PF14938_consen 237 FLEDLLEAY 245 (282)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444445443
No 147
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.89 E-value=7.5e-08 Score=108.85 Aligned_cols=133 Identities=11% Similarity=0.028 Sum_probs=85.0
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHH
Q 004340 538 CAMGNCYSLQK---DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE--------DFENGIRSYQSALRV--DARHYNS 604 (760)
Q Consensus 538 ~~la~~~~~~g---~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g--------~~e~A~~~~~~al~~--~p~~~~a 604 (760)
+..|..+...+ ++..|+.+|++|++++|+++.+|..++.+|.... +...+.....+++.+ ++.++.+
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~ 422 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRI 422 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHH
Confidence 34454454443 3678888889999999988888888777765431 233444444554443 4555566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Q 004340 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPL 671 (760)
Q Consensus 605 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~ 671 (760)
+..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 66666666666666666666666666666 3556666666666666666666666666666666653
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.89 E-value=3.5e-06 Score=95.79 Aligned_cols=297 Identities=13% Similarity=-0.009 Sum_probs=209.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc
Q 004340 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (760)
Q Consensus 435 ~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~ 514 (760)
.+.-.|..+..+++.+|+....+++..+|+...+....|..++++|++++|..+++..-...+++...+..+..+|..++
T Consensus 12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 34455667788899999999999999999999999999999999999999998888887788888899999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCH---------
Q 004340 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYV-ALEDF--------- 584 (760)
Q Consensus 515 ~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~-~~g~~--------- 584 (760)
+.+++..+|++++..+|. -+..+.+-.+|.+.+.|.+-.+.--+..+..|..++.+.....+++ .....
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 999999999999999999 8888889999999999887666666666678887765544443333 33322
Q ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHH-H-HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004340 585 ENGIRSYQSALRVD-ARHYN-SWYGLGMVYLRQEKFEFSEHHFRM-A-FQISPHSSVIMSYLGTAMHALKRSGEAIEMME 660 (760)
Q Consensus 585 e~A~~~~~~al~~~-p~~~~-a~~~la~~~~~~g~~~~A~~~l~~-a-l~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~ 660 (760)
.-|...+++.++.. +-... -....-.++..+|++++|.+.+.. . -...+.+..........+...++|.+-.++..
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23555666666655 21111 122233566778999999999833 2 23344455555666778888999999999999
Q ss_pred HHHHhCCCChHHHHH-HHHH------------HHHcCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 004340 661 KAILADKKNPLPMYQ-KANI------------LLSLEKFDEALEVLEELKEYAPRES-GVYALMGKIYKRRNMHEKAMLH 726 (760)
Q Consensus 661 ~al~~~p~~~~~~~~-la~~------------~~~~g~~~eA~~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~ 726 (760)
+++..++++...+.. .-.+ +-..+..+..++..++.+.-....+ -++..+-.-+...|+.+++.-+
T Consensus 251 ~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 251 RLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred HHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 999999987322222 1111 1122233444444444443322222 3334444444577888887766
Q ss_pred HHHHHh
Q 004340 727 FGLALD 732 (760)
Q Consensus 727 ~~~al~ 732 (760)
|-+-+.
T Consensus 331 y~~kfg 336 (932)
T KOG2053|consen 331 YFKKFG 336 (932)
T ss_pred HHHHhC
Confidence 655443
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.1e-08 Score=99.06 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHH
Q 004340 587 GIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK---RSGEAIEMMEKAI 663 (760)
Q Consensus 587 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~eAl~~l~~al 663 (760)
.+.-++.-+..+|++.+.|..||.+|+.+|++..|...|.+++++.|+++.++..+|.+++... ...++...+++++
T Consensus 141 l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 141 LIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444444444444332 1234444444444
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 004340 664 LADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (760)
Q Consensus 664 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 700 (760)
..+|.+..+.+.+|..++..|+|.+|+..++.+++..
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 4444444444444444444444444444444444433
No 150
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=1.7e-07 Score=89.72 Aligned_cols=197 Identities=17% Similarity=0.205 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~ 613 (760)
+..++..|..|-..|-+.-|.--|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++++|....++.+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVL 693 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 693 (760)
--|++..|.+-+.+-.+.+|.++.--..+-.. ...-++.+|..-+.+-.+...+....|.... +.+|+..+ ...+
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgkiS~-e~l~ 219 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGKISE-ETLM 219 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhhccH-HHHH
Confidence 99999999999999999999987532222111 2233666776655443333222222232222 22333221 2233
Q ss_pred HHHHHHCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 694 EELKEYAPRE-------SGVYALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 694 ~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
+++.....++ .+.++.+|+.|...|+.++|...|+-++..+-
T Consensus 220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 3443333332 46799999999999999999999999987543
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=6.8e-08 Score=98.18 Aligned_cols=129 Identities=19% Similarity=0.179 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHH
Q 004340 617 KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE---KFDEALEVL 693 (760)
Q Consensus 617 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l 693 (760)
..+..+.-++.-+..+|++..-|..||.+|...|++..|...|.+++++.|+++..+..+|.+++... ...++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35666777888899999999999999999999999999999999999999999999999999987654 457899999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004340 694 EELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 694 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
++++..+|.+..+.+.||..++..|+|.+|+..++..++..|.+........
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 9999999999999999999999999999999999999998887765444333
No 152
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.87 E-value=5.5e-08 Score=94.14 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHH
Q 004340 583 DFENGIRSYQSALRVDARH--YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIE 657 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAl~ 657 (760)
.+..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555554444433333 3445666666666666666666666666554432 2355666666666666666666
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 658 MMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 658 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
.+++++.+.|.....+..+|.++...|+... .+|........+++|+.+|++++..+|..
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~--------------------~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAI--------------------EQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHH--------------------HcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 6666666666665555566655553332110 11111112223446666777777788765
Q ss_pred H
Q 004340 738 T 738 (760)
Q Consensus 738 ~ 738 (760)
.
T Consensus 154 ~ 154 (168)
T CHL00033 154 Y 154 (168)
T ss_pred H
Confidence 4
No 153
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.87 E-value=1.8e-07 Score=95.69 Aligned_cols=268 Identities=14% Similarity=0.122 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHH
Q 004340 468 VLSQVGKAYFEVVDYLEAERAFTLARRASPYS---LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRL------APQSWC 538 (760)
Q Consensus 468 ~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~------~~~~~~ 538 (760)
-....|.-++...++++|+..+.+.+..-.+. ...+-.+..+....|.+.++..+.-..+....+ .-+++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999988764432 334444556777777777776654444332211 236788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 004340 539 AMGNCYSLQKDHETALKNFQRAVQLNPR-----FAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYG 607 (760)
Q Consensus 539 ~la~~~~~~g~~~~A~~~~~kal~~~p~-----~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~------~~a~~~ 607 (760)
.++..+....++.+++.+-+..+.+... -..+...+|.++..++.++++++.|++|+++.... ..++..
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 8899999999999999988888776322 23677789999999999999999999999874332 346889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCChH
Q 004340 608 LGMVYLRQEKFEFSEHHFRMAFQISPH----S------SVIMSYLGTAMHALKRSGEAIEMMEKAILAD------KKNPL 671 (760)
Q Consensus 608 la~~~~~~g~~~~A~~~l~~al~~~p~----~------~~~~~~la~~~~~~g~~~eAl~~l~~al~~~------p~~~~ 671 (760)
+|.+|....|+++|.-+..+|.++... + ..+++.++..+..+|+.-+|.++.+++.++. +-...
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar 247 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR 247 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999999999999887322 1 3357889999999999999999999998764 22345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHhcCC
Q 004340 672 PMYQKANILLSLEKFDEALEVLEELKEYAPR------ESGVYALMGKIYKRRNMHEK-----AMLHFGLALDLKP 735 (760)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~l~p 735 (760)
...-+|.+|...|+.+.|..-|+.+...... ...+....|+++....-..+ |+++-++++++..
T Consensus 248 c~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 248 CLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 6677999999999999999999999875431 24556666676665544444 7887777777543
No 154
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.3e-06 Score=86.65 Aligned_cols=254 Identities=15% Similarity=0.136 Sum_probs=146.9
Q ss_pred HHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH
Q 004340 440 YRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKL 519 (760)
Q Consensus 440 ~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a 519 (760)
..++-.|.|..++..-.+..... ........+.+.|..+|.|...+.-....- .....+...++..+..-++.++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence 33455778888888777655443 666777888889999998876555443322 11233444444444444443333
Q ss_pred HH-HHHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 520 SY-LAQELITTDRLAP-QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597 (760)
Q Consensus 520 ~~-~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~ 597 (760)
.. +.+.+....-.+- .....-|.+|...+++++|++...+. ...++...-..++.++.+++-|...++++.++
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 32 2233332222222 33344455666777777777666552 23445555556666677777777777777666
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 004340 598 DARHYNSWYGLGMVYLR----QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (760)
Q Consensus 598 ~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~ 673 (760)
+.+. .+..||..+.. .+++.+|.-+|++.-+..|..+......+.+++.+|+|++|...++.++..++++++.+
T Consensus 167 ded~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 5432 22233333322 23466666777776666666666666777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHHCCCCH
Q 004340 674 YQKANILLSLEKFDEAL-EVLEELKEYAPRES 704 (760)
Q Consensus 674 ~~la~~~~~~g~~~eA~-~~l~~al~~~p~~~ 704 (760)
.++..+-...|...++. +.+.+....+|..+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 77666666666554443 34444555555544
No 155
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.4e-06 Score=86.41 Aligned_cols=258 Identities=14% Similarity=0.126 Sum_probs=191.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 004340 472 VGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHE 551 (760)
Q Consensus 472 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 551 (760)
-.+-++..|+|..++..-++.-... ...+...++.+.|..+|.+...+.-.... ....-.+...++.+...-++.+
T Consensus 14 ~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~---~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 14 NIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEG---KATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccc---cCChHHHHHHHHHHhhCcchhH
Confidence 3466888999999998887765543 66677777888888888754433221111 1111244555666666666666
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 552 TALKNFQRAVQL--NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAF 629 (760)
Q Consensus 552 ~A~~~~~kal~~--~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al 629 (760)
+-+.-+.+.+.. +..+......-|.+|+..|++++|++..... ...++...-..++.++.+++.|...++++.
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444433 2233345566688899999999999988773 335666666788999999999999999998
Q ss_pred HhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Q 004340 630 QISPHSSVIMSYLGTAMHAL----KRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (760)
Q Consensus 630 ~~~p~~~~~~~~la~~~~~~----g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 705 (760)
+++.+ ..+..+|..+... +++.+|.-+|++.-+..+..+.....++.+.+.+|+|++|...++.++..++++++
T Consensus 165 ~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 165 QIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred ccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 88654 4455566655543 47899999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCChHHH
Q 004340 706 VYALMGKIYKRRNMHEKAM-LHFGLALDLKPSATDV 740 (760)
Q Consensus 706 ~~~~la~~~~~~g~~~~A~-~~~~~al~l~p~~~~a 740 (760)
++.++..+-...|...++. ++..+....+|+++-+
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9999999999999886665 4556666778887754
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=98.87 E-value=1.3e-07 Score=101.71 Aligned_cols=120 Identities=12% Similarity=0.040 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004340 550 HETALKNFQRAV---QLNPRFAYGHTLCGHEYVAL---------EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK 617 (760)
Q Consensus 550 ~~~A~~~~~kal---~~~p~~~~a~~~la~~~~~~---------g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 617 (760)
.+.|+.+|.+++ .++|+++.+|..++.+++.. .+..+|.+..+++++++|.++.++..+|.++...++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 455777777777 77777777777777666542 123344444444555555555555555554444444
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004340 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~ 669 (760)
++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|..
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 5555555555555555555555555555555555555555555555554443
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.86 E-value=3.1e-08 Score=84.02 Aligned_cols=97 Identities=26% Similarity=0.506 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE 616 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 616 (760)
++.+|.++...|++++|+..++++++..|....++..+|.++...+++++|+.+|++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHhCC
Q 004340 617 KFEFSEHHFRMAFQISP 633 (760)
Q Consensus 617 ~~~~A~~~l~~al~~~p 633 (760)
++++|..++.++++.+|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 55555555555554443
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.86 E-value=1.1e-07 Score=89.53 Aligned_cols=117 Identities=24% Similarity=0.235 Sum_probs=94.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHH
Q 004340 614 RQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQKANILLSLEKFD 687 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~ 687 (760)
..++...+...++..++.+|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+.+.+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5788888888888888888888 4567778888889999999999999988877554 356778899999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 688 EALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLAL 731 (760)
Q Consensus 688 eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 731 (760)
+|+..++.. .-.+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999988663 2333456788889999999999999999998874
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.83 E-value=1.4e-08 Score=82.37 Aligned_cols=67 Identities=28% Similarity=0.445 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 004340 669 NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN-MHEKAMLHFGLALDLKP 735 (760)
Q Consensus 669 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p 735 (760)
++..|..+|.+++..|++++|+..|+++++++|+++.+++.+|.+|..+| ++++|+++|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566677777777777777777777777777777777777777777777 57777777777777666
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.82 E-value=8.5e-08 Score=92.82 Aligned_cols=100 Identities=11% Similarity=0.162 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 004340 550 HETALKNFQRAVQLNPRF--AYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEFSEHH 624 (760)
Q Consensus 550 ~~~A~~~~~kal~~~p~~--~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~ 624 (760)
+..+...+.+.++..+.. ...+..+|.++...|++++|+..|++++.+.++. ..++..+|.++...|++++|+.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444443333333 4455666777777777777777777776665442 34677777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc
Q 004340 625 FRMAFQISPHSSVIMSYLGTAMHAL 649 (760)
Q Consensus 625 l~~al~~~p~~~~~~~~la~~~~~~ 649 (760)
+++++.+.|.....+..+|.++...
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 7777777777777666666666633
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.79 E-value=1.8e-07 Score=96.45 Aligned_cols=113 Identities=13% Similarity=0.146 Sum_probs=79.7
Q ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHH
Q 004340 636 SVIMSYLGTAM-HALKRSGEAIEMMEKAILADKKN---PLPMYQKANILLSLEKFDEALEVLEELKEYAPR---ESGVYA 708 (760)
Q Consensus 636 ~~~~~~la~~~-~~~g~~~eAl~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---~~~~~~ 708 (760)
...++..|..+ .+.|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34455555554 44577777777777777777766 367777777777777777777777777777665 356777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004340 709 LMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIE 748 (760)
Q Consensus 709 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~ 748 (760)
.+|.++..+|++++|+..|+++++..|+...+......|.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~ 261 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLN 261 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHh
Confidence 7788887788888888888888888887776655555443
No 162
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.79 E-value=2.3e-08 Score=81.01 Aligned_cols=66 Identities=32% Similarity=0.617 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE-DFENGIRSYQSALRVDA 599 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g-~~e~A~~~~~~al~~~p 599 (760)
+..|..+|.++...|++++|+.+|.++++++|+++.++..+|.++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 45555555555555544
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.77 E-value=3.4e-07 Score=86.21 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=58.7
Q ss_pred hcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHH
Q 004340 546 LQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFE 619 (760)
Q Consensus 546 ~~g~~~~A~~~~~kal~~~p~~---~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~ 619 (760)
..++...+...+++.+...|.. ..+.+.+|.+++..|++++|...|++++...++. ..+.+.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555555555555554 2334445555555555555555555555544332 234455555555555555
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004340 620 FSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKA 662 (760)
Q Consensus 620 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~a 662 (760)
+|+..++. +...+..+.++..+|.++...|++++|+..|+++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 55555543 2222233344445555555555555555555544
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.75 E-value=2.1e-08 Score=84.89 Aligned_cols=81 Identities=22% Similarity=0.303 Sum_probs=51.3
Q ss_pred cCChHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004340 649 LKRSGEAIEMMEKAILADKK--NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLH 726 (760)
Q Consensus 649 ~g~~~eAl~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 726 (760)
.|++++|+.+++++++..|. +...++.+|.+|+..|+|++|+.++++ .+..+.+...++.+|.++.++|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666666664 344555567777777777777777766 555555566666667777777777777766
Q ss_pred HHHH
Q 004340 727 FGLA 730 (760)
Q Consensus 727 ~~~a 730 (760)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6654
No 165
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.6e-07 Score=98.57 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=111.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (760)
Q Consensus 571 ~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 650 (760)
....|..|++.|+|..|...|++++..-.... .-+.++.... .++ -..++.+++.++.+++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~--~~~-----k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKA--EAL-----KLACHLNLAACYLKLK 271 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHH--HHH-----HHHHhhHHHHHHHhhh
Confidence 34568889999999999999998877532211 0011111111 111 1345788999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 004340 651 RSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKA-MLHFGL 729 (760)
Q Consensus 651 ~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~ 729 (760)
+|.+|+..+.++|.++|.+..++|..|.++..+|+|+.|+..|++++++.|.+..+...+..+..+..++.+. .+.|..
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888888888777766554 788888
Q ss_pred HHhcCCC
Q 004340 730 ALDLKPS 736 (760)
Q Consensus 730 al~l~p~ 736 (760)
++...+.
T Consensus 352 mF~k~~~ 358 (397)
T KOG0543|consen 352 MFAKLAE 358 (397)
T ss_pred Hhhcccc
Confidence 8875553
No 166
>PRK15331 chaperone protein SicA; Provisional
Probab=98.74 E-value=1.3e-07 Score=88.12 Aligned_cols=108 Identities=13% Similarity=0.011 Sum_probs=76.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 004340 632 SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (760)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la 711 (760)
.++..+..+..|.-++..|++++|..+|+-....+|.++..+..+|.++..+++|++|+..|..+..+.++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 33444555666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004340 712 KIYKRRNMHEKAMLHFGLALDLKPSATDV 740 (760)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~al~l~p~~~~a 740 (760)
.||..+|+.+.|+..|+.++. .|.+...
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 777777777777777777777 4555443
No 167
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=1.1e-06 Score=84.09 Aligned_cols=197 Identities=15% Similarity=0.133 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCY 544 (760)
Q Consensus 465 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~ 544 (760)
.+..++..|..|-..|-+.-|.-.|.+++.+.|. -++++..+|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~----------------------------------m~~vfNyLG~Yl 109 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPD----------------------------------MPEVFNYLGIYL 109 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC----------------------------------cHHHHHHHHHHH
Confidence 4566677777777777777777777766666655 466677777778
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004340 545 SLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHH 624 (760)
Q Consensus 545 ~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 624 (760)
...|+++.|.+.|...+++||....++.+.|..++--|+++-|.+.+.+-.+.+|+++---..+-. -...-+..+|...
T Consensus 110 ~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tn 188 (297)
T COG4785 110 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTN 188 (297)
T ss_pred HhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888877777532211111 1223355666555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 625 FRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN-------PLPMYQKANILLSLEKFDEALEVLEELK 697 (760)
Q Consensus 625 l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~l~~al 697 (760)
+.+-.+...+..+-|+..+.. .|+..+ ...++++..-..++ .+.++.+|..+...|+.++|...|+-++
T Consensus 189 L~qR~~~~d~e~WG~~iV~~y---LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 189 LKQRAEKSDKEQWGWNIVEFY---LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHhccHhhhhHHHHHHH---HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 544333332233333222222 222211 22233333322222 3567888888888888888888888877
Q ss_pred HHC
Q 004340 698 EYA 700 (760)
Q Consensus 698 ~~~ 700 (760)
...
T Consensus 265 ann 267 (297)
T COG4785 265 ANN 267 (297)
T ss_pred HHh
Confidence 643
No 168
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.68 E-value=1.2e-08 Score=103.32 Aligned_cols=233 Identities=8% Similarity=-0.029 Sum_probs=130.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 503 MDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE 582 (760)
Q Consensus 503 ~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g 582 (760)
+-..|.-|+..|++++|+.+|.+.+..+|.++..+.+.|.+|++...+..|..-...|+.++..+..+|...|.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666666666666666666666666666666666666666666666555556666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---------HHHHHHHHHcCChH
Q 004340 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIM---------SYLGTAMHALKRSG 653 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~---------~~la~~~~~~g~~~ 653 (760)
...+|.+-++.++++.|...+....++.+-. ..++. -+.+..|....+. -.-|..+...|.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~----I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERK----IATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhh----HHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 6666666666666666654444333332211 11110 0111111111111 11234444555555
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 654 EAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 654 eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
.++..+..-+..+..+...... +..|.+..++++|+...-+++...|........-+.+.--.|...+|...++.++.+
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 5555555444443333333333 666777778888888887777776655444555555555667778888888888888
Q ss_pred CCChHHHHHHH
Q 004340 734 KPSATDVATIK 744 (760)
Q Consensus 734 ~p~~~~a~~~l 744 (760)
.|.......-+
T Consensus 331 ~P~~~~~~~~~ 341 (536)
T KOG4648|consen 331 APAVETPKETE 341 (536)
T ss_pred ccccccchhhh
Confidence 88876554433
No 169
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.68 E-value=1.5e-08 Score=102.62 Aligned_cols=226 Identities=10% Similarity=-0.021 Sum_probs=127.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Q 004340 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (760)
Q Consensus 437 ~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~ 516 (760)
.+|..++.+|+|++||++|.+.+..+|.++..+...|.+|+++..|..|...+..++.++...
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y----------------- 164 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY----------------- 164 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-----------------
Confidence 456666666666666666666666666666666666666666666666666666666655444
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~ 596 (760)
..+|...|.+-...|...+|.+-++.++.+.|...+..-.++.+-. ..++ +-+.+
T Consensus 165 -----------------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~K 219 (536)
T KOG4648|consen 165 -----------------VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATK 219 (536)
T ss_pred -----------------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhh
Confidence 4445555555555566666666666666666654444333332221 1111 00111
Q ss_pred hCCCCHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004340 597 VDARHYNSW---------YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (760)
Q Consensus 597 ~~p~~~~a~---------~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p 667 (760)
..|....+. ..-|..+...|.++.++.++-..+....++..+... +..+.+..++++|+.-..+++..+|
T Consensus 220 sT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~ 298 (536)
T KOG4648|consen 220 STPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKP 298 (536)
T ss_pred cCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCC
Confidence 111111111 122445566677777777766655554444433333 6666677777777777777777666
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Q 004340 668 KNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (760)
Q Consensus 668 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 705 (760)
.........+.+-.-.|...++...++.++.+.|....
T Consensus 299 s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 299 TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred CcCcccCCCchhHHHHhhhhhcCcchhheeeecccccc
Confidence 55444444444444556667777777777777665433
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.67 E-value=5.6e-08 Score=77.73 Aligned_cols=64 Identities=23% Similarity=0.420 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004340 675 QKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSAT 738 (760)
Q Consensus 675 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 738 (760)
.+|..++..|++++|+..|+++++..|+++.+++.+|.++..+|++++|+.+|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566677777777777777777777777777777777777777777777777777777777653
No 171
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=5.1e-07 Score=94.95 Aligned_cols=130 Identities=18% Similarity=0.261 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPR----F-----------AYGHTLCGHEYVALEDFENGIRSYQSALRVDA 599 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~----~-----------~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p 599 (760)
......|+.|++.|+|..|...|++++..-.. + ..++.+++.++.++++|.+|+..+.++|.++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 34456789999999999999999999875221 1 12345555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 004340 600 RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEA-IEMMEKAIL 664 (760)
Q Consensus 600 ~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA-l~~l~~al~ 664 (760)
++..++|..|.++..+|+|+.|+..|++++++.|.+-.+...+..+..+..++.+. .+.|..++.
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555555555555444443332 444444443
No 172
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=4.5e-06 Score=93.30 Aligned_cols=274 Identities=15% Similarity=0.165 Sum_probs=175.2
Q ss_pred hcCChHHHH--HHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Q 004340 444 CMYRCKDAL--DVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSY 521 (760)
Q Consensus 444 ~~g~~~eAi--~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~ 521 (760)
+.|....|. +.++++.+... ..-...|.+..++|..++|+.+|.+.-+ +..+-..|...|.+.+|.+
T Consensus 779 ClGhm~~aRgaRAlR~a~q~~~---e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~e 847 (1416)
T KOG3617|consen 779 CLGHMKNARGARALRRAQQNGE---EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFE 847 (1416)
T ss_pred hhhhhhhhhhHHHHHHHHhCCc---chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHH
Confidence 344444432 34444444332 2223567777888888999988888754 3445566777777888877
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHc
Q 004340 522 LAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRA----------VQLNP----------RFAYGHTLCGHEYVAL 581 (760)
Q Consensus 522 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ka----------l~~~p----------~~~~a~~~la~~~~~~ 581 (760)
+++.--.+. --..|+..|..+...++.+.|+++|+++ +..+| .+...|...|..+...
T Consensus 848 iAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~ 925 (1416)
T KOG3617|consen 848 IAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESV 925 (1416)
T ss_pred HHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 665432222 1356778888888888888888888875 22233 2345566778878888
Q ss_pred CCHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCC
Q 004340 582 EDFENGIRSYQSALRV---------------------DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ------ISPH 634 (760)
Q Consensus 582 g~~e~A~~~~~~al~~---------------------~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~------~~p~ 634 (760)
|+.+.|+.+|..|-.. ...+..+.|.+|+.|...|++.+|+..|.+|-. +...
T Consensus 926 GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKE 1005 (1416)
T KOG3617|consen 926 GEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKE 1005 (1416)
T ss_pred cchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888876432 234566788899999999999999988876643 2222
Q ss_pred C---HHH-----------HHHHHHHHHHcC-ChHHHHHHHHHH------H-----------------HhCC-CChHHHHH
Q 004340 635 S---SVI-----------MSYLGTAMHALK-RSGEAIEMMEKA------I-----------------LADK-KNPLPMYQ 675 (760)
Q Consensus 635 ~---~~~-----------~~~la~~~~~~g-~~~eAl~~l~~a------l-----------------~~~p-~~~~~~~~ 675 (760)
+ ..+ ....|..|...| ..+.|..+|.+| + .+++ .++..+..
T Consensus 1006 nd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred cCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 1 011 112233344444 444444444332 1 1233 35677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHH------HHHC----------------CC---------CHHHHHHHHHHHHHcCCHHHHH
Q 004340 676 KANILLSLEKFDEALEVLEEL------KEYA----------------PR---------ESGVYALMGKIYKRRNMHEKAM 724 (760)
Q Consensus 676 la~~~~~~g~~~eA~~~l~~a------l~~~----------------p~---------~~~~~~~la~~~~~~g~~~~A~ 724 (760)
-+..+....+|++|..++-.+ +.+. |. ...++..+|.++.++|.|..|-
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 888888889999998776544 3321 10 1357888999999999999999
Q ss_pred HHHHHH
Q 004340 725 LHFGLA 730 (760)
Q Consensus 725 ~~~~~a 730 (760)
+-|.+|
T Consensus 1166 KKfTQA 1171 (1416)
T KOG3617|consen 1166 KKFTQA 1171 (1416)
T ss_pred HHHhhh
Confidence 988876
No 173
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=6.6e-07 Score=96.95 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=74.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 004340 574 CGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSG 653 (760)
Q Consensus 574 la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (760)
+...+...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+..++...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 334444556666666666666665543 44456666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 654 EAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEE 695 (760)
Q Consensus 654 eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 695 (760)
.|+.+.+++++..|.+...|+.|+.+|..+|+++.|+..++.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 666666666666666666666666666666666666655553
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=98.64 E-value=5.4e-07 Score=84.06 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 004340 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (760)
Q Consensus 599 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~ 678 (760)
++.-+..+..|.-++..|++++|...|+-....+|.++..|..||.++...++|++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 33345566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 004340 679 ILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 679 ~~~~~g~~~eA~~~l~~al~ 698 (760)
||+.+|+.+.|+..|+.++.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 66666666666666666665
No 175
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.63 E-value=5.1e-05 Score=86.59 Aligned_cols=226 Identities=13% Similarity=0.101 Sum_probs=176.3
Q ss_pred HHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004340 477 FEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKN 556 (760)
Q Consensus 477 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 556 (760)
...++|.+|+....++++..|+...+....|..+.++|+.++|..+++..-...+.+...+-.+-.+|...+++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 46789999999999999999999999999999999999999999998888888888899999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCH---------HHHHHHHH
Q 004340 557 FQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNS-WYGLGMVYLRQEKF---------EFSEHHFR 626 (760)
Q Consensus 557 ~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a-~~~la~~~~~~g~~---------~~A~~~l~ 626 (760)
|+++...+|. .+....+-.+|.+.++|.+-.+.--+..+..|..+.. |..+..+....... .-|.+.++
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9999999999 8888888888999998887777766777777776543 44444444333332 34555666
Q ss_pred HHHHhC-CCCHHH-HHHHHHHHHHcCChHHHHHHHH-HHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 627 MAFQIS-PHSSVI-MSYLGTAMHALKRSGEAIEMME-KAILAD-KKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 627 ~al~~~-p~~~~~-~~~la~~~~~~g~~~eAl~~l~-~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
+.++.. +-...+ ....-.++...|++++|++++. ...+.. +.+..........+..+++|.+-.+...+++...++
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 666555 222111 2334556778899999999993 333333 344444456677888899999999999999999998
Q ss_pred C
Q 004340 703 E 703 (760)
Q Consensus 703 ~ 703 (760)
+
T Consensus 259 d 259 (932)
T KOG2053|consen 259 D 259 (932)
T ss_pred c
Confidence 7
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.62 E-value=8.1e-07 Score=96.30 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=112.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004340 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK 617 (760)
Q Consensus 538 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 617 (760)
-.+-.++...++++.|+.+|++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34556667788999999999999988865 667789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004340 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al 663 (760)
++.|+.+.++++...|.+...|..|+.+|...|++++|+..+..+-
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999998777543
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.61 E-value=1.5e-07 Score=75.16 Aligned_cols=60 Identities=20% Similarity=0.508 Sum_probs=25.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (760)
Q Consensus 575 a~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 634 (760)
|..++..|++++|+..|+++++.+|++..+|+.+|.++..+|++++|+.+|+++++.+|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 334444444444444444444444444444444444444444444444444444444443
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.61 E-value=1.5e-06 Score=89.72 Aligned_cols=101 Identities=13% Similarity=0.118 Sum_probs=50.8
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHH
Q 004340 604 SWYGLGMVY-LRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQK 676 (760)
Q Consensus 604 a~~~la~~~-~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~---~~~~~~l 676 (760)
.++..|..+ ...|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +.+++.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 334444433 33455555555555555555544 2445555555555555555555555555544442 3445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 004340 677 ANILLSLEKFDEALEVLEELKEYAPRES 704 (760)
Q Consensus 677 a~~~~~~g~~~eA~~~l~~al~~~p~~~ 704 (760)
|.++..+|++++|+..|+++++..|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 5555555555555555555555555443
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.60 E-value=7.8e-05 Score=77.61 Aligned_cols=259 Identities=11% Similarity=-0.007 Sum_probs=198.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 513 (760)
..+-.+...+-.|+|++|.+.|+.++........-+..+-......|+.+.|..+-+.+-...|.-..++..........
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~ 201 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA 201 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence 33446777788999999999999987643322222333333345689999999999999999999999999888899999
Q ss_pred cCHHHHHHHHHHHHHh---CCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004340 514 KEDMKLSYLAQELITT---DRLAP-----QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFE 585 (760)
Q Consensus 514 ~~~~~a~~~~~~~l~~---~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e 585 (760)
|+++.++.+.+..... .++-. ..+...+.. ...-+...|...-..++++.|+...+-..-+..++..|+..
T Consensus 202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchh
Confidence 9999999988766543 22221 112222222 23457889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004340 586 NGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRM---AFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKA 662 (760)
Q Consensus 586 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~---al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~a 662 (760)
++-.+++.+.+..|. +. ++..|....--+.++.-+++ ...+.|++.+.....+..-+..|++..|..--+.+
T Consensus 281 Kg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 281 KGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999999886 33 33344443333344444444 45568999999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 004340 663 ILADKKNPLPMYQKANILLSL-EKFDEALEVLEELKEY 699 (760)
Q Consensus 663 l~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~~ 699 (760)
....|.. .++..++.+-... |+-.++..++-++++-
T Consensus 356 ~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 356 AREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9998864 4667788876655 9999999999999874
No 180
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.56 E-value=9.7e-06 Score=80.92 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcccccCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Q 004340 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT---GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLE 501 (760)
Q Consensus 433 l~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~---~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 501 (760)
-.+..+|...+..|+|++|++.|+.+...+|.. ..+...++.++++.++|++|+..+++-+.+.|.++.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 356678899999999999999999998888764 457889999999999999999999999999998654
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.53 E-value=1.9e-06 Score=77.45 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 004340 571 HTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH---SSVIMSYLGT 644 (760)
Q Consensus 571 ~~~la~~~~~~g~~e~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~la~ 644 (760)
++.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++++...|+ +..+...++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3444444444444444444444444432211 234444444444444444444444444444444 3334444444
Q ss_pred HHHHcCChHHHHHHHHHH
Q 004340 645 AMHALKRSGEAIEMMEKA 662 (760)
Q Consensus 645 ~~~~~g~~~eAl~~l~~a 662 (760)
++...|++++|+..+-.+
T Consensus 84 ~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 444444444444444433
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.53 E-value=2.2e-06 Score=77.07 Aligned_cols=94 Identities=23% Similarity=0.167 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChHHHHHHH
Q 004340 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKK---NPLPMYQKA 677 (760)
Q Consensus 604 a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~---~~~~~~~la 677 (760)
+++.+|.++...|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34455555555555555555555555543222 234445555555555555555555555555444 334444455
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 004340 678 NILLSLEKFDEALEVLEELK 697 (760)
Q Consensus 678 ~~~~~~g~~~eA~~~l~~al 697 (760)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555554444
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.50 E-value=1.8e-05 Score=74.31 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004340 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ-ISPHSSVIMSYLGTAMHALKRSGEAIEMMEK 661 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~-~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~ 661 (760)
+.+.+.....+.+...|. ..-.+.||..+...|++.+|...|++++. +..+++.++..++.+.+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 344444444455555554 44567788888888888888888888775 4667777888888888888888888888888
Q ss_pred HHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 662 AILADKK--NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLAL 731 (760)
Q Consensus 662 al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 731 (760)
..+..|. .+.....+|++|...|++.+|...|+.++...|+ +.+....+..+.++|+.++|..-+....
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8887764 4666777888888888888888888888888775 6677777888888887777665554443
No 184
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=6e-05 Score=80.38 Aligned_cols=267 Identities=16% Similarity=0.075 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCC--------CHHHHH
Q 004340 468 VLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQEL-ITTDRL--------APQSWC 538 (760)
Q Consensus 468 ~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~-l~~~p~--------~~~~~~ 538 (760)
+....-+.|....+...+..-.+.+.....+.+.++...+...+..|++.+|.+++... +...+. ...+|.
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence 34445566778888888888888888888888999999999999999999998876543 222332 235688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 539 AMGNCYSLQKDHETALKNFQRAVQL---------NP---------RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600 (760)
Q Consensus 539 ~la~~~~~~g~~~~A~~~~~kal~~---------~p---------~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~ 600 (760)
++|.++++.|.|.-+..+|.+|++. .| ..-++.++.|..|...|+.-.|.++|.++......
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999961 11 23467899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCC-------------------------------------------------HHHHHHHHHHHHHh
Q 004340 601 HYNSWYGLGMVYLRQEK-------------------------------------------------FEFSEHHFRMAFQI 631 (760)
Q Consensus 601 ~~~a~~~la~~~~~~g~-------------------------------------------------~~~A~~~l~~al~~ 631 (760)
++..|..++.+++...+ .+-|.-+++.++-+
T Consensus 368 nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~L 447 (696)
T KOG2471|consen 368 NPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYL 447 (696)
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhc
Confidence 99999999998864311 23344555555432
Q ss_pred CC----------------------C------------------------C-----------HHHHHHHHHHHHHcCChHH
Q 004340 632 SP----------------------H------------------------S-----------SVIMSYLGTAMHALKRSGE 654 (760)
Q Consensus 632 ~p----------------------~------------------------~-----------~~~~~~la~~~~~~g~~~e 654 (760)
-| + . ..++.+.+.+-.++|+.-.
T Consensus 448 l~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~ 527 (696)
T KOG2471|consen 448 LNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIK 527 (696)
T ss_pred CchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 10 0 0 1245567788889999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHH-----HHHcCCHHHHHHHHHHHHH-----------------------HCCC----
Q 004340 655 AIEMMEKAILADKKNPLPMYQKANI-----LLSLEKFDEALEVLEELKE-----------------------YAPR---- 702 (760)
Q Consensus 655 Al~~l~~al~~~p~~~~~~~~la~~-----~~~~g~~~eA~~~l~~al~-----------------------~~p~---- 702 (760)
|+..-++.++.. +-..++..+|.+ +..+.+..+|...+.--+- ++|.
T Consensus 528 AL~~a~kLLq~~-~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~ 606 (696)
T KOG2471|consen 528 ALSAATKLLQLA-DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRT 606 (696)
T ss_pred HHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCC
Confidence 999999988764 333445445544 4567777787776654210 0110
Q ss_pred -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 703 -----------ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 703 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
....++.||.++..+|++++|..++..|..+-|
T Consensus 607 ~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 607 RQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred cccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 123578999999999999999999999998877
No 185
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.48 E-value=4.8e-05 Score=76.03 Aligned_cols=189 Identities=15% Similarity=0.123 Sum_probs=132.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY---NSWY 606 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~---~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~---~a~~ 606 (760)
.+..|+.-|...+..|++++|+..|+++....|.. ..+...++.++++.+++++|+...++-+++.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46788999999999999999999999998887754 46778889999999999999999999999888764 3566
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 004340 607 GLGMVYLRQ--------EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (760)
Q Consensus 607 ~la~~~~~~--------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~ 678 (760)
..|.+++.. .-..+|...|+..++..|++..+--....+ ..+...+ ...-...|.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~Iar 175 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAIAR 175 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHHHH
Confidence 677665543 123466777777777788764332111111 0111111 112234678
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004340 679 ILLSLEKFDEALEVLEELKEYAPRE---SGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSAT 738 (760)
Q Consensus 679 ~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 738 (760)
.|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|.+.-.-.-.-.|+..
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 8888888888888888888876653 46778888888888888888876554444445544
No 186
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.48 E-value=6.3e-07 Score=73.39 Aligned_cols=71 Identities=28% Similarity=0.433 Sum_probs=52.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004340 677 ANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAI 747 (760)
Q Consensus 677 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l 747 (760)
..+|...+++++|++++++++.++|+++..++.+|.++..+|++++|+..|+++++..|++.++..++..|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 45677777777777777777777777777777777777777777777777777777777777666555443
No 187
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=3.7e-05 Score=86.27 Aligned_cols=229 Identities=13% Similarity=0.061 Sum_probs=158.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 004340 487 RAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR 566 (760)
Q Consensus 487 ~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~ 566 (760)
..++++.+. |+ +.-...+.+...+|-.++|..+|.+.-.. -.+-..|...|.+++|.++.+.--.+ .
T Consensus 790 RAlR~a~q~-~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--H 856 (1416)
T KOG3617|consen 790 RALRRAQQN-GE--EDEAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--H 856 (1416)
T ss_pred HHHHHHHhC-Cc--chhhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--e
Confidence 445555543 33 22334566677889999999998887543 35667899999999999887653322 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 567 FAYGHTLCGHEYVALEDFENGIRSYQSA----------LRVDA----------RHYNSWYGLGMVYLRQEKFEFSEHHFR 626 (760)
Q Consensus 567 ~~~a~~~la~~~~~~g~~e~A~~~~~~a----------l~~~p----------~~~~a~~~la~~~~~~g~~~~A~~~l~ 626 (760)
....|+..|..+...++.+.|+++|+++ +..+| .+...|...|..+...|+.+.|+.+|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 3457888899999999999999999975 22233 345678888999999999999999998
Q ss_pred HHHHh---------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH------hCCCCh---------
Q 004340 627 MAFQI---------------------SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAIL------ADKKNP--------- 670 (760)
Q Consensus 627 ~al~~---------------------~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~------~~p~~~--------- 670 (760)
.|-.. ...+..+.+.+|..|...|++.+|+.+|.+|-. +..++.
T Consensus 937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen 937 SAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred HhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 87543 234456778999999999999999999887643 322221
Q ss_pred -----HHHHHHHHHHHHcC-CHHHHHHHHHHH------HH-----------------HCC-CCHHHHHHHHHHHHHcCCH
Q 004340 671 -----LPMYQKANILLSLE-KFDEALEVLEEL------KE-----------------YAP-RESGVYALMGKIYKRRNMH 720 (760)
Q Consensus 671 -----~~~~~la~~~~~~g-~~~eA~~~l~~a------l~-----------------~~p-~~~~~~~~la~~~~~~g~~ 720 (760)
.-....|..|...| ..+.|..+|.++ ++ ++| .++.++..-+..+....+|
T Consensus 1017 l~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred hhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH
Confidence 11222344444554 555555555443 11 233 3688888888999999999
Q ss_pred HHHHHHHH
Q 004340 721 EKAMLHFG 728 (760)
Q Consensus 721 ~~A~~~~~ 728 (760)
++|..++-
T Consensus 1097 ekAV~lL~ 1104 (1416)
T KOG3617|consen 1097 EKAVNLLC 1104 (1416)
T ss_pred HHHHHHHH
Confidence 99886543
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.44 E-value=7.8e-07 Score=71.71 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=44.7
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004340 681 LSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 681 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
+..|++++|+..|++++...|++..+++.+|.+|.+.|++++|...+++++..+|+++.++.+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 45667777777777777777777777777777777777777777777777777777665555544
No 189
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.43 E-value=5.4e-06 Score=83.51 Aligned_cols=100 Identities=18% Similarity=0.245 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHH
Q 004340 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQKAN 678 (760)
Q Consensus 605 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~---~~~~~~la~ 678 (760)
.|..|.-+++.|+|..|...|...++..|++ +.+++.||.+++.+|++++|...|..+++..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4555555555555555555555555555543 3345555555555555555555555555544433 244444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCH
Q 004340 679 ILLSLEKFDEALEVLEELKEYAPRES 704 (760)
Q Consensus 679 ~~~~~g~~~eA~~~l~~al~~~p~~~ 704 (760)
+...+|+.++|...|+++++..|+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 44444444444444444444444433
No 190
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=3e-06 Score=80.30 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 004340 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS-----VIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI 679 (760)
Q Consensus 605 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-----~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~ 679 (760)
+..-|.-++..|+|++|..-|..|+.+.|..+ .+|.+.|.++++++.++.|+..+.++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44568899999999999999999999998764 4678889999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Q 004340 680 LLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN 718 (760)
Q Consensus 680 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 718 (760)
|.++.+|++|++.|+++++.+|....+...++++--...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 999999999999999999999987666555555444333
No 191
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=3.7e-06 Score=79.68 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 573 LCGHEYVALEDFENGIRSYQSALRVDARHY-----NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (760)
Q Consensus 573 ~la~~~~~~g~~e~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 647 (760)
.-|.-++..|+|++|..-|..|+...|... ..|.+.|.++++++.++.|+..+.++++++|.+..++...|.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 349999999999999999999999988653 467888999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 004340 648 ALKRSGEAIEMMEKAILADKKNPLPMYQKANI 679 (760)
Q Consensus 648 ~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~ 679 (760)
++.+|++|+.-|.+.++.+|....+.-..+++
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999999877665544444
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.40 E-value=7.1e-07 Score=71.95 Aligned_cols=66 Identities=30% Similarity=0.374 Sum_probs=41.7
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004340 647 HALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGK 712 (760)
Q Consensus 647 ~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~ 712 (760)
+..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++...|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 455666666666666666666666666666666666666666666666666666665555555544
No 193
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=4.5e-05 Score=74.24 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=76.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHH
Q 004340 540 MGNCYSLQKDHETALKNFQRAVQL----NP--RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY------NSWYG 607 (760)
Q Consensus 540 la~~~~~~g~~~~A~~~~~kal~~----~p--~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~------~a~~~ 607 (760)
-|+.|...++|..|-..|.++-.. +. +.+..|...+.+|.+ ++.++|+.++++++++..+.. .-+..
T Consensus 40 Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~ 118 (288)
T KOG1586|consen 40 AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIE 118 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhh
Confidence 455566666666666555555443 11 112233333444333 366666666666665543321 22334
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH-------HH
Q 004340 608 LGMVYLRQ-EKFEFSEHHFRMAFQISPHSS------VIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPL-------PM 673 (760)
Q Consensus 608 la~~~~~~-g~~~~A~~~l~~al~~~p~~~------~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~-------~~ 673 (760)
+|.+|... .++++|+.+|+++-+...... ..+...+..-...++|.+|+..|++.....-++.. .+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 55555443 555555555555554432221 12333344444455555555555555544333321 12
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 674 YQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
+..|.|++-..+.-.+...+++..+++|.
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 23344444445555555555555555553
No 194
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=6.4e-06 Score=82.98 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccccCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYN---TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (760)
Q Consensus 435 ~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~---~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 511 (760)
.+..|+.++..|+|.+|...|...++..|+ .+.+++.+|.+++.+|+|++|...|..+.+..|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------------ 211 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------------ 211 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------------
Confidence 667888999999999999999999988886 56789999999999999999999999999988764
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004340 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGH 571 (760)
Q Consensus 512 ~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~ 571 (760)
|..|++++.+|.+....|+.++|...|+++++..|....+.
T Consensus 212 -------------------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 212 -------------------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred -------------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 34455566666666666666666666666666666554443
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.36 E-value=2.4e-06 Score=69.89 Aligned_cols=69 Identities=30% Similarity=0.417 Sum_probs=43.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 004340 643 GTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (760)
Q Consensus 643 a~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la 711 (760)
..++...+++++|++++++++..+|+++..++.+|.++..+|++++|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 345566666666666666666666666666666666666666666666666666666666655544443
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.32 E-value=9.9e-06 Score=74.06 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYN---TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL 500 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~---~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 500 (760)
.++..|...+..|+|.+|++.|+.+....|. ...+.+.+|.+|+..++|++|+..+++.++++|.++
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 4567888999999999999999999887775 567889999999999999999999999999999864
No 197
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=2e-05 Score=83.90 Aligned_cols=284 Identities=10% Similarity=0.028 Sum_probs=185.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--C---CC----------
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA--S---PY---------- 498 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~--~---p~---------- 498 (760)
..+..+...+..+.|+..++.+..+......+.++++..+.+.+..-..-+-...++....+ + |.
T Consensus 19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~ 98 (696)
T KOG2471|consen 19 SLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQ 98 (696)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhc
Confidence 44556777788999999999999988888888888877777654433333333333333222 1 11
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CC--
Q 004340 499 SLEGMDIYSTVLYHLKEDMKLSYLAQELITTD----RLAP-QSWCAMGNCYSLQKDHETALKNFQRAVQL------NP-- 565 (760)
Q Consensus 499 ~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~----p~~~-~~~~~la~~~~~~g~~~~A~~~~~kal~~------~p-- 565 (760)
..-..+..+.++++...+..+......++..- ...+ ...+..-..+....+.++|+.++.-.-++ .+
T Consensus 99 ~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~g 178 (696)
T KOG2471|consen 99 GTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVG 178 (696)
T ss_pred chHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 12345566777777777777766555444321 1111 12223334455556666666654432221 00
Q ss_pred C-------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004340 566 R-------------------------FAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEF 620 (760)
Q Consensus 566 ~-------------------------~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 620 (760)
+ -..+.......|....+...+....+.+..+..+.+.+....+..++..|++.+
T Consensus 179 n~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~k 258 (696)
T KOG2471|consen 179 NHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPK 258 (696)
T ss_pred cccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHH
Confidence 0 012233344556666777777777777777777778888888888899999999
Q ss_pred HHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---------CC---------CChHHH
Q 004340 621 SEHHFRMA-FQISPH--------SSVIMSYLGTAMHALKRSGEAIEMMEKAILA---------DK---------KNPLPM 673 (760)
Q Consensus 621 A~~~l~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~eAl~~l~~al~~---------~p---------~~~~~~ 673 (760)
|.+.+... +...|. ....|+++|.++++.|.|.-+..+|.+|++. .| ...++.
T Consensus 259 A~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eil 338 (696)
T KOG2471|consen 259 AMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEIL 338 (696)
T ss_pred HHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhH
Confidence 88877543 222222 1234678899999999999999999998851 11 234678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Q 004340 674 YQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRR 717 (760)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~ 717 (760)
|+.|..|...|++-.|.++|.++......+|..|..+|.|....
T Consensus 339 YNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 339 YNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88999999999999999999999888888888999998887653
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.29 E-value=0.0001 Score=69.37 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=106.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 547 QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR-VDARHYNSWYGLGMVYLRQEKFEFSEHHF 625 (760)
Q Consensus 547 ~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~A~~~l 625 (760)
.=+.+.+..-..+.+...|. ..-.+.+|......|++.+|...|++++. +..++...+..++...+..+++..|...+
T Consensus 69 ~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 69 KLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred hcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33445555555555555554 33456678888888888888888888776 45667777888888888888888888888
Q ss_pred HHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 626 RMAFQISPH--SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 626 ~~al~~~p~--~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
++..+.+|. .+.....+|.++...|++.+|...|+.++...|+ +.+....+..+.++|+.++|...+....+
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 888877664 3556667788888888888888888888887774 55666677778888877777666655443
No 199
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.29 E-value=2e-05 Score=72.08 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHH
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQKANILLSLEKFDEALEVLEELKEYAPRE---SGVYALMG 711 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la 711 (760)
.++.-|...++.|+|++|++.|+.+....|.. ..+.+.++.+|++.+++++|+..+++.++++|.+ ..+++..|
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34444444555555555555555544444432 2344445555555555555555555555554433 23445555
Q ss_pred HHHHHcCC---------------HHHHHHHHHHHHhcCCChHHHH
Q 004340 712 KIYKRRNM---------------HEKAMLHFGLALDLKPSATDVA 741 (760)
Q Consensus 712 ~~~~~~g~---------------~~~A~~~~~~al~l~p~~~~a~ 741 (760)
.++..+.. ..+|...|++.+...|++.-+.
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 55554443 6678888888888888776543
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.0015 Score=64.93 Aligned_cols=226 Identities=13% Similarity=0.119 Sum_probs=153.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH-------------------HHHHHHHHHHHHccCHHHHHHHHHH
Q 004340 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL-------------------EGMDIYSTVLYHLKEDMKLSYLAQE 525 (760)
Q Consensus 465 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------~~~~~la~~l~~l~~~~~a~~~~~~ 525 (760)
....|...-.++.++..+++|...+...-+.+..+. .....+|.+...+|...+...-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 344566666777788888888877766655542211 1122334444444443332222222
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Q 004340 526 LITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD-ARHYNS 604 (760)
Q Consensus 526 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~-p~~~~a 604 (760)
+... -..+...+......+..++.+++-+ ..+.+.++.++...|+|.-.+..+.+.++.+ |.++..
T Consensus 148 L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 148 LKTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred HHHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 1110 0011111222222344444444433 3456677888888999999999999999987 567888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 004340 605 WYGLGMVYLRQEKFEFSEHHFRMAFQIS------PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (760)
Q Consensus 605 ~~~la~~~~~~g~~~~A~~~l~~al~~~------p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~ 678 (760)
...+|.+-++.|+.+.|..+|+..-+.. .....+..+.+.++.-.+++.+|...+.+.+..+|.++.+..+.|.
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 8899999999999999999999654432 1234456667778888889999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCC
Q 004340 679 ILLSLEKFDEALEVLEELKEYAPRE 703 (760)
Q Consensus 679 ~~~~~g~~~eA~~~l~~al~~~p~~ 703 (760)
|+..+|+..+|++.++.++++.|..
T Consensus 295 cllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999998863
No 201
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.17 E-value=5.5e-05 Score=66.91 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHH
Q 004340 640 SYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE----SGVYALMGKIYK 715 (760)
Q Consensus 640 ~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~----~~~~~~la~~~~ 715 (760)
-..|.++...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|++.+++++++..+. -.++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456677777777888888888887777777777778888777788888888888877775433 245677777787
Q ss_pred HcCCHHHHHHHHHHHHhcCCCh
Q 004340 716 RRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 716 ~~g~~~~A~~~~~~al~l~p~~ 737 (760)
.+|+-+.|...|+.+-++....
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCHH
Confidence 8888888877777776665444
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.13 E-value=4.1e-05 Score=82.70 Aligned_cols=69 Identities=19% Similarity=0.125 Sum_probs=64.2
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYG---HTLCGHEYVALEDFENGIRSYQSALRV 597 (760)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a---~~~la~~~~~~g~~e~A~~~~~~al~~ 597 (760)
.+|+++.+|+++|..|...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999998854 999999999999999999999999987
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.10 E-value=4.2e-05 Score=82.58 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=66.6
Q ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004340 495 ASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQS---WCAMGNCYSLQKDHETALKNFQRAVQL 563 (760)
Q Consensus 495 ~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~kal~~ 563 (760)
.+|++.+++..++.+|+.+|++++|+..++++++++|+++++ |+++|.+|..+|++++|+.++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 499999999999999999999999999999999999999865 999999999999999999999999997
No 204
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00016 Score=73.83 Aligned_cols=153 Identities=11% Similarity=0.032 Sum_probs=71.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCH
Q 004340 543 CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV-DARH---YNSWYGLGMVYLRQEKF 618 (760)
Q Consensus 543 ~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~-~p~~---~~a~~~la~~~~~~g~~ 618 (760)
+....|++.+|....++.++..|.+..++..--.+++.+|+.+.-...+++.+.. +++- ..+.-.++..+...|-|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3344455555555555555555555444444444445555555555555554443 3332 22233334444455555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 619 EFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN----PLPMYQKANILLSLEKFDEALEVLE 694 (760)
Q Consensus 619 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~ 694 (760)
++|++..++++++++.+..+...++.++...|++.++.+++.+.-..-... ..-|...|.++..-+.|+.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 555555555555555555555555555555555555555544432211110 0112334444444455555555554
Q ss_pred H
Q 004340 695 E 695 (760)
Q Consensus 695 ~ 695 (760)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 205
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.08 E-value=0.0016 Score=73.54 Aligned_cols=156 Identities=19% Similarity=0.123 Sum_probs=121.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 580 ALEDFENGIRSYQSALRVDARH-YNS------WYGLGMVYL----RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA 648 (760)
Q Consensus 580 ~~g~~e~A~~~~~~al~~~p~~-~~a------~~~la~~~~----~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 648 (760)
-.||-+.+++.+.++.+...-. +-+ |+.....+. .....+.|.+.+....+..|+....++..|.++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4689999999999988732211 111 111111111 24567889999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCH---
Q 004340 649 LKRSGEAIEMMEKAILADKK----NPLPMYQKANILLSLEKFDEALEVLEELKEYAPR-ESGVYALMGKIYKRRNMH--- 720 (760)
Q Consensus 649 ~g~~~eAl~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~~~~la~~~~~~g~~--- 720 (760)
.|+.++|++.|++++..... ...+++.+++++..+++|++|..++.++.+...- .....|..|.|+...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 99999999999998854332 2356788999999999999999999999986553 345677889999999999
Q ss_pred ----HHHHHHHHHHHhcCC
Q 004340 721 ----EKAMLHFGLALDLKP 735 (760)
Q Consensus 721 ----~~A~~~~~~al~l~p 735 (760)
++|.++|.++-.+..
T Consensus 360 ~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 889999988866443
No 206
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0095 Score=64.16 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHhcccccCCC---CHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHC---CC----CHH
Q 004340 435 ILGEGYRMSCMY--RCKDALDVYLKLPHKHYN---TGWVLSQVGKAY-FEVVDYLEAERAFTLARRAS---PY----SLE 501 (760)
Q Consensus 435 ~l~~a~~~~~~g--~~~eAi~~l~~~~~~~p~---~~~~l~~la~~~-~~~g~~~~A~~~~~~al~~~---p~----~~~ 501 (760)
.+|-|..+...| +...+|.+++.+....|. .+.....+|.++ ....+++.|...++++..+. |. ..+
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~ 89 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ 89 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence 345555555555 778888888877665553 344566666554 45678888888888887653 22 234
Q ss_pred HHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 004340 502 GMDIYSTVLYHLK-EDMKLSYLAQELITTDRLAP----QSWCAMGNCYSLQKDHETALKN 556 (760)
Q Consensus 502 ~~~~la~~l~~l~-~~~~a~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~ 556 (760)
+...++.++.+.. ....+..++.+++++....| ...+.++.++.-..|+..|++.
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 5666777777776 46667777777777766655 3445667777777777666665
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0014 Score=65.11 Aligned_cols=149 Identities=14% Similarity=0.164 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004340 585 ENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS-PHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (760)
Q Consensus 585 e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAl~~l~~al 663 (760)
+..++.+++-+ ..+.+.++.++...|.|.-....+.+.++.+ |.++.....+|.+.++.|+.+.|..+|+..-
T Consensus 166 ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 166 ESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred hhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44455555433 3466788889999999999999999999998 6778889999999999999999999999655
Q ss_pred HhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 664 LAD------KKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 664 ~~~------p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
+.. .....+..+.+.+|.-.+++.+|...+.+++..+|.++.+....|.|..-+|+...|++.++.+++..|..
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 432 22345667788888889999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 004340 738 TD 739 (760)
Q Consensus 738 ~~ 739 (760)
..
T Consensus 320 ~l 321 (366)
T KOG2796|consen 320 YL 321 (366)
T ss_pred ch
Confidence 54
No 208
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.00022 Score=72.91 Aligned_cols=159 Identities=9% Similarity=-0.041 Sum_probs=134.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHH
Q 004340 573 LCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI-SPHS---SVIMSYLGTAMHA 648 (760)
Q Consensus 573 ~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~---~~~~~~la~~~~~ 648 (760)
.-+.+....|++.+|....++.++..|.+.-++..--.+++..|+.+.-...+++.+.. +++- ..+.-.++..+.+
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34556677899999999999999999999999888888999999999999999998876 6655 4556667888999
Q ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 004340 649 LKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR----ESGVYALMGKIYKRRNMHEKAM 724 (760)
Q Consensus 649 ~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 724 (760)
.|-|++|.+..++++++++.+..+...++.++...|++.++.+...+--..-.. ...-|...|.+|..-+.|+.|+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 999999999999999999999999999999999999999999988775432221 1244777889999999999999
Q ss_pred HHHHHHH
Q 004340 725 LHFGLAL 731 (760)
Q Consensus 725 ~~~~~al 731 (760)
+.|++-+
T Consensus 268 eIyD~ei 274 (491)
T KOG2610|consen 268 EIYDREI 274 (491)
T ss_pred HHHHHHH
Confidence 9998654
No 209
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.03 E-value=0.023 Score=60.93 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=46.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 677 ANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLA 730 (760)
Q Consensus 677 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 730 (760)
|..++..|+|.++.-+-.-..++.| .+.++..+|.|.....+|++|..++...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4456788999999999888899999 7999999999999999999999998763
No 210
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.02 E-value=6.7e-05 Score=78.78 Aligned_cols=135 Identities=15% Similarity=0.123 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 004340 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL-KRSGEAIEMMEKAILADKKNPLPMYQKANILLSL 683 (760)
Q Consensus 605 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~ 683 (760)
|..+.....+.+..+.|..+|.+|.+..+....+|...|.+.+.. ++.+.|..+|+.+++..|.+...|......+...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 333444444444455555555555433333444454555554442 2333355555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004340 684 EKFDEALEVLEELKEYAPRES---GVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 684 g~~~eA~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
++.+.|..+|++++..-+... .+|......-...|+.+...+.++++.+..|++..
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 555555555555554433222 34555555555555555555555555555555443
No 211
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.02 E-value=5.1e-05 Score=71.63 Aligned_cols=87 Identities=21% Similarity=0.306 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--
Q 004340 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR----------SGEAIEMMEKAILADKKNPLPMYQKANILLSLEK-- 685 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~----------~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~-- 685 (760)
|+.|.+.++.....+|.+.+.+++.|.++.++.+ +++|+.-|++|+.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6778888888888888888888888888776643 3456666666666677766777777766655442
Q ss_pred ---------HHHHHHHHHHHHHHCCCCH
Q 004340 686 ---------FDEALEVLEELKEYAPRES 704 (760)
Q Consensus 686 ---------~~eA~~~l~~al~~~p~~~ 704 (760)
|++|..+|+++...+|++.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 3444444444445555443
No 212
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.00 E-value=0.00097 Score=72.28 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 570 GHTLCGHEYVALEDFENGIRSYQSALRVDAR--HYNSWYGLGMVYLRQEKFEFSEHHFRMA 628 (760)
Q Consensus 570 a~~~la~~~~~~g~~e~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~a 628 (760)
+...+|.+..+.|+.++|++.++..++..|. ...++..|..++..++.|.++...+.+.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444566666666666666666666655443 3445556666666666666665555554
No 213
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0019 Score=63.22 Aligned_cols=183 Identities=14% Similarity=0.138 Sum_probs=116.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C-CCC-HHHHHHHHHHHHHcC
Q 004340 543 CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV----D-ARH-YNSWYGLGMVYLRQE 616 (760)
Q Consensus 543 ~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~----~-p~~-~~a~~~la~~~~~~g 616 (760)
.+...+++++|.++|.++-. .|....+|..|-..|.++... + .++ ...|...+.+| +.+
T Consensus 23 lfgg~~k~eeAadl~~~Aan--------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~ 87 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAAN--------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKV 87 (288)
T ss_pred ccCCCcchHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hcc
Confidence 33444578888888877633 333444444444444444332 1 111 22333334444 445
Q ss_pred CHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHc
Q 004340 617 KFEFSEHHFRMAFQISPHSSV------IMSYLGTAMHAL-KRSGEAIEMMEKAILADKKN------PLPMYQKANILLSL 683 (760)
Q Consensus 617 ~~~~A~~~l~~al~~~p~~~~------~~~~la~~~~~~-g~~~eAl~~l~~al~~~p~~------~~~~~~la~~~~~~ 683 (760)
+.++|..++++++++.-+-.. .+..+|.+|..- .++++|+.+|+++-+..... -.++...|..-..+
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 888888888888887655433 244677777655 78888888888887764432 24566677777788
Q ss_pred CCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004340 684 EKFDEALEVLEELKEYAPRES-------GVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDV 740 (760)
Q Consensus 684 g~~~eA~~~l~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 740 (760)
++|.+|+..|++.....-++. ..++.-|.|+.-..+.-.+...+++..+++|...+.
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 888888888888776544432 345566777777788888888888888888876654
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.97 E-value=8.1e-06 Score=67.76 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 671 LPMYQKANILLSLEKFDEALEVLEELKEY---AP----RESGVYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~l~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
.++..+|.+|..+|++++|+.+|++++++ .+ ....++..+|.++..+|++++|+++|++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45556666666666666666666666544 11 12345666677777777777777777666654
No 215
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.97 E-value=0.00042 Score=75.04 Aligned_cols=198 Identities=15% Similarity=0.140 Sum_probs=137.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 530 DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (760)
Q Consensus 530 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la 609 (760)
+.+....-..+..-..+..+...-++...+|++++|+.+.+|..||.-. ..-..+|.++|+++++..... +...
T Consensus 164 d~D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~----lg~s 237 (539)
T PF04184_consen 164 DTDALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEAS----LGKS 237 (539)
T ss_pred CCCccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHh----hchh
Confidence 3333334445666677889999999999999999999999999887532 345788999999988754321 1111
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCC
Q 004340 610 MVYLRQEKFEFSEHHFRMAFQISPH--SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK--NPLPMYQKANILLSLEK 685 (760)
Q Consensus 610 ~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~--~~~~~~~la~~~~~~g~ 685 (760)
......|..- ........ ...+...+|.+..+.|+.++|++.++..++..|. ...++.++..++..++.
T Consensus 238 ~~~~~~g~~~-------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~ 310 (539)
T PF04184_consen 238 QFLQHHGHFW-------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA 310 (539)
T ss_pred hhhhcccchh-------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC
Confidence 1111111111 11111111 1345577899999999999999999999988775 45688999999999999
Q ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhcCCChHHH
Q 004340 686 FDEALEVLEELKEY-APRESGVYALMGKIYKR-RNM---------------HEKAMLHFGLALDLKPSATDV 740 (760)
Q Consensus 686 ~~eA~~~l~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~l~p~~~~a 740 (760)
|.++..++.+.-++ .|+.+.+.+..|.+..+ .++ -..|++.+++|++.+|.-+..
T Consensus 311 Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 311 YADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 99999999886544 35667666666555433 222 235788999999999998764
No 216
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.94 E-value=0.00038 Score=61.73 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH----YNSWYGLGMVY 612 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~----~~a~~~la~~~ 612 (760)
+-..|......|+.+.|++.|.+++.+-|..+.+|.+.+..+...|+.++|+.-+.+++++.... ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34457777888888888888888888888888888888888888888888888888888875443 34677888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCC
Q 004340 613 LRQEKFEFSEHHFRMAFQISP 633 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~p 633 (760)
..+|+-+.|..-|+.+.++..
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCC
Confidence 888888888888888776643
No 217
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.92 E-value=0.033 Score=61.05 Aligned_cols=288 Identities=12% Similarity=0.051 Sum_probs=160.0
Q ss_pred cCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc-C-------H
Q 004340 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK-E-------D 516 (760)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~-~-------~ 516 (760)
..-++++.+.|+++....|..+.+|.......+...+|+....+|.+++..-- +.+.|..|..-....+ + .
T Consensus 32 t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 32 TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHHH
Confidence 34899999999999999999999999999999999999999999999886422 2344433332222211 1 1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHh------------------------
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCYS---------LQKDHETALKNFQRAVQL------------------------ 563 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~kal~~------------------------ 563 (760)
..|..+...-+..++.+...|...+..+. .+.+.+.-.+.|++|+..
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~ta 190 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITA 190 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222234444444444433321 111223333344444321
Q ss_pred -------------------------------CCCC-----------HHHHHHHHHHHHHc------CC--HHHHHHHHHH
Q 004340 564 -------------------------------NPRF-----------AYGHTLCGHEYVAL------ED--FENGIRSYQS 593 (760)
Q Consensus 564 -------------------------------~p~~-----------~~a~~~la~~~~~~------g~--~e~A~~~~~~ 593 (760)
+|.. ...|.++..--... |. -..-.-.|++
T Consensus 191 rK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ 270 (656)
T KOG1914|consen 191 RKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQ 270 (656)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHH
Confidence 0000 00011111000000 00 0112234555
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHh----------------------------
Q 004340 594 ALRVDARHYNSWYGLGMVYLRQEK--------------FEFSEHHFRMAFQI---------------------------- 631 (760)
Q Consensus 594 al~~~p~~~~a~~~la~~~~~~g~--------------~~~A~~~l~~al~~---------------------------- 631 (760)
++..-+.+++.|+..+..+...++ -+++..+|++++..
T Consensus 271 ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~ 350 (656)
T KOG1914|consen 271 CLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKV 350 (656)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhh
Confidence 555555556666555544444444 45555555555432
Q ss_pred ----------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHH
Q 004340 632 ----------SPHS-SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI-LLSLEKFDEALEVLEELKEY 699 (760)
Q Consensus 632 ----------~p~~-~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~-~~~~g~~~eA~~~l~~al~~ 699 (760)
...+ ..+|+.+-....+..-.+.|..+|.+|-+..-....++..-|.+ |...++.+-|..+|+-.++.
T Consensus 351 ~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 351 HEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK 430 (656)
T ss_pred HHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Confidence 1111 11234444444444555666666666655433222344433333 45678888999999999998
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 700 APRESGVYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 700 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
.++.+..-......+..+++-..|...|++++..
T Consensus 431 f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 431 FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9988888888888888888888888888888875
No 218
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.92 E-value=0.00025 Score=74.56 Aligned_cols=135 Identities=11% Similarity=0.016 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 536 SWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA-LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (760)
Q Consensus 536 ~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~-~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~ 614 (760)
+|..+.+...+.+..+.|..+|.+|.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566666677777777778888888875555556777777777555 4555558888888888877777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004340 615 QEKFEFSEHHFRMAFQISPHSS---VIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (760)
Q Consensus 615 ~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~ 670 (760)
.++.+.|..+|++++..-+... .+|......-.+.|+.+...++.+++.+..|.+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 8888888888888777655544 4677777777777888877777777777776644
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.92 E-value=1.5e-05 Score=66.10 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=7.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 004340 607 GLGMVYLRQEKFEFSEHHFRMA 628 (760)
Q Consensus 607 ~la~~~~~~g~~~~A~~~l~~a 628 (760)
.+|.+|..+|++++|+.+|+++
T Consensus 10 ~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 10 NLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333333
No 220
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.91 E-value=0.00011 Score=69.52 Aligned_cols=88 Identities=24% Similarity=0.279 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 004340 584 FENGIRSYQSALRVDARHYNSWYGLGMVYLRQE----------KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR-- 651 (760)
Q Consensus 584 ~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g----------~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~-- 651 (760)
|+.|.+.++.....+|.+++.++..|.++..+. .+++|+.-|++++.++|+...+++++|.++...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 678888888888899999999888888877653 35677788888888999999999999998876643
Q ss_pred ---------hHHHHHHHHHHHHhCCCChH
Q 004340 652 ---------SGEAIEMMEKAILADKKNPL 671 (760)
Q Consensus 652 ---------~~eAl~~l~~al~~~p~~~~ 671 (760)
|++|..+|++|...+|.+..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 67778888888888887664
No 221
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.90 E-value=0.0082 Score=65.23 Aligned_cols=67 Identities=21% Similarity=0.131 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 004340 671 LPMYQKANILLSL------EKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNM-----------------HEKAMLHF 727 (760)
Q Consensus 671 ~~~~~la~~~~~~------g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~ 727 (760)
.++..+|...... +..++++..|.++++..|....+|+.+|..+...-+ ...|+..|
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y 332 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY 332 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence 3455566666666 788888888999988888888888888887765421 13488888
Q ss_pred HHHHhcCCCh
Q 004340 728 GLALDLKPSA 737 (760)
Q Consensus 728 ~~al~l~p~~ 737 (760)
-+++.+.++.
T Consensus 333 ~~al~~~~~~ 342 (352)
T PF02259_consen 333 LKALSLGSKY 342 (352)
T ss_pred HHHHhhCCCc
Confidence 8888888873
No 222
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.87 E-value=0.00034 Score=76.21 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=88.7
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004340 646 MHALKRSGEAIEMMEKAILADKKNP-LPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAM 724 (760)
Q Consensus 646 ~~~~g~~~eAl~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 724 (760)
+...|+...|.+++..|+...|... ....++|.++.+-|-...|-..+.+++.+.-..+-.++.+|.+|..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 3456888899999999998887653 456789999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHH
Q 004340 725 LHFGLALDLKPSATDVATIKAAI 747 (760)
Q Consensus 725 ~~~~~al~l~p~~~~a~~~l~~l 747 (760)
+.|+.|++++|++.....-+..|
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999876654443
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0015 Score=64.38 Aligned_cols=193 Identities=11% Similarity=0.031 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALEDFENGIRSYQSALRVD-----ARHY 602 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~------~~a~~~la~~~~~~g~~e~A~~~~~~al~~~-----p~~~ 602 (760)
+..|..-+.+|...+++++|..++.+|.+-...+ +.+|-..|.+......+.++..+|+++..+. |+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 3455555666666777777777777776543222 1233444555555666666666666665542 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----C--CCCh
Q 004340 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILA----D--KKNP 670 (760)
Q Consensus 603 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eAl~~l~~al~~----~--p~~~ 670 (760)
..-...+--.....++++|+..|++++.+-..+ .+.+...+.++.+..++++|-..+.+-... . +...
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 222223333334455666666666655543222 223444555555666666555555443221 1 1111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 671 LPMYQKANILLSLEKFDEALEVLEELKEY----APRESGVYALMGKIYKRRNMHEKAMLHF 727 (760)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~l~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~ 727 (760)
..+.....+|....+|..|..+++...++ .+++..+..+|-..| ..|+.+++.+.+
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 22333333344444666666666554443 223344444444433 345555544443
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.82 E-value=0.004 Score=66.80 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHH-HHHhCCCCHH
Q 004340 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARRA----SPYSLEGMDIYSTVLYH---LKEDMKLSYLAQE-LITTDRLAPQ 535 (760)
Q Consensus 464 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~---l~~~~~a~~~~~~-~l~~~p~~~~ 535 (760)
-++.+...+-..|....+|+.-+++.+.+-.+ -+......+.||.++.+ .|+.++|...+.. +....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 46667777778899999999999998887766 34556667777777777 6777777777766 4455566777
Q ss_pred HHHHHHHHHHh
Q 004340 536 SWCAMGNCYSL 546 (760)
Q Consensus 536 ~~~~la~~~~~ 546 (760)
++..+|.+|..
T Consensus 219 ~~gL~GRIyKD 229 (374)
T PF13281_consen 219 TLGLLGRIYKD 229 (374)
T ss_pred HHHHHHHHHHH
Confidence 77777777643
No 225
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.82 E-value=0.097 Score=58.49 Aligned_cols=178 Identities=12% Similarity=0.030 Sum_probs=110.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHc
Q 004340 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI-SPHSSVIMSYLGTAMHAL 649 (760)
Q Consensus 571 ~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~la~~~~~~ 649 (760)
|..........|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++ .|..+.+....+......
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 3334444455666666666666666655555666777776666667777777666666665 355566666666666677
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHH-HHcCCHHH
Q 004340 650 KRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP--RE----SGVYALMGKIY-KRRNMHEK 722 (760)
Q Consensus 650 g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p--~~----~~~~~~la~~~-~~~g~~~~ 722 (760)
|++..|...+++..+..|....+-...+......|+.+.+....+......+ .+ ...+...++.. .-.++.+.
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~ 459 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADL 459 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777777776677666666666666777777666631111111111 11 22334444433 34578889
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH
Q 004340 723 AMLHFGLALDLKPSATDVATIKAAIE 748 (760)
Q Consensus 723 A~~~~~~al~l~p~~~~a~~~l~~l~ 748 (760)
|...+.++++..|++...+.-+..+.
T Consensus 460 a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 460 ARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 99999999999999876655444443
No 226
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00015 Score=71.06 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004340 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK 617 (760)
Q Consensus 538 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 617 (760)
-.-|+.++...+|+.|+.+|.+++.++|..+..|.+.+.+|++..+++.+..-.+++++++|+...+++.+|.+......
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 004340 618 FEFSEHHFRMAFQI 631 (760)
Q Consensus 618 ~~~A~~~l~~al~~ 631 (760)
|++|+..+.++...
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999999665
No 227
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.80 E-value=0.019 Score=66.34 Aligned_cols=278 Identities=12% Similarity=0.051 Sum_probs=184.5
Q ss_pred hHHHHHHHhcccccCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcc---
Q 004340 448 CKDALDVYLKLPHKHYNTGWVLSQVGKAYFEV-----VDYLEAERAFTLARRA-----SPYSLEGMDIYSTVLYHLK--- 514 (760)
Q Consensus 448 ~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~l~~l~--- 514 (760)
..+|...++.+.+.. +..+...+|.+|+.- .|.+.|+.+|+.+... .-..+.+...++.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 345555555544432 345666677777654 6889999999888761 1114446677787777743
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 004340 515 --EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK---DHETALKNFQRAVQLNPRFAYGHTLCGHEYVA----LEDFE 585 (760)
Q Consensus 515 --~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~----~g~~e 585 (760)
+...|..++.++.+.. ++.+.+.+|.++.... +...|.++|..|... .+..+.+.++.+|.. ..+.+
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 4566777777776654 4667777888877655 678899999988765 567788888888875 45788
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc----CChHHHH
Q 004340 586 NGIRSYQSALRVDARHYNSWYGLGMVYLRQ-EKFEFSEHHFRMAFQISPHSSV----IMSYLGTAMHAL----KRSGEAI 656 (760)
Q Consensus 586 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~-g~~~~A~~~l~~al~~~p~~~~----~~~~la~~~~~~----g~~~eAl 656 (760)
.|..+|.++.+.. .+.+.+.++..+..- ++++.+.-.+....+..-..+. .+.......... .+.+.+.
T Consensus 382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence 9999999998877 455555555554433 7777776666555444322211 111111111111 2455666
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHH
Q 004340 657 EMMEKAILADKKNPLPMYQKANILLSL----EKFDEALEVLEELKEYAPRESGVYALMGKIYKRR---NMHEKAMLHFGL 729 (760)
Q Consensus 657 ~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~ 729 (760)
..+.++... .+..+...++.+|+.- .+++.|...|.++.... +...+++|.++..- .....|.++|.+
T Consensus 460 ~~~~~a~~~--g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 460 SLYSRAAAQ--GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHhc--cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 666665543 4567777888887765 36999999999998877 88899999998752 127899999999
Q ss_pred HHhcCCChH
Q 004340 730 ALDLKPSAT 738 (760)
Q Consensus 730 al~l~p~~~ 738 (760)
+.+.+....
T Consensus 535 ~~~~~~~~~ 543 (552)
T KOG1550|consen 535 ASEEDSRAY 543 (552)
T ss_pred HHhcCchhh
Confidence 988776543
No 228
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.006 Score=60.86 Aligned_cols=186 Identities=15% Similarity=0.115 Sum_probs=115.9
Q ss_pred CChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC-HHHHHHHHH
Q 004340 446 YRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE-DMKLSYLAQ 524 (760)
Q Consensus 446 g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~-~~~a~~~~~ 524 (760)
.+|.++..+|+.++. +...-..|+++...++.++|.+...|...-.++.+++. ..+-..++.
T Consensus 40 e~fr~~m~YfRAI~~-----------------~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIA-----------------KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHh-----------------ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 366666666665433 23355778888888888888877777777777766654 444556666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 004340 525 ELITTDRLAPQSWCAMGNCYSLQKDHE-TALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYN 603 (760)
Q Consensus 525 ~~l~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~ 603 (760)
++++.+|.+-++|...-.+....|++. .-+++.++++..+.++..+|...-.+...-+.++.-+.+....++.+-.+-.
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 777777777777776666666666666 6666666777666666666666666666666677777777666666665555
Q ss_pred HHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 604 SWYGLGMVYLRQ-E-----KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA 648 (760)
Q Consensus 604 a~~~la~~~~~~-g-----~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 648 (760)
+|...-.+.... | ..+.-+.+..+.+...|++..+|..|..++..
T Consensus 183 AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 183 AWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 554433222221 1 12233444555566666666666666555553
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.78 E-value=0.0033 Score=67.42 Aligned_cols=176 Identities=16% Similarity=0.058 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHH
Q 004340 569 YGHTLCGHEYVALEDFENGIRSYQSALRV----DARHYNSWYGLGMVYLR---QEKFEFSEHHFRM-AFQISPHSSVIMS 640 (760)
Q Consensus 569 ~a~~~la~~~~~~g~~e~A~~~~~~al~~----~p~~~~a~~~la~~~~~---~g~~~~A~~~l~~-al~~~p~~~~~~~ 640 (760)
.+...+-..|....+|+.-+...+..-.+ .+....+.+.+|.++-+ .|+.++|+..+.. .....+.+++++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34444555566666666666666655544 33345555566666666 6666666666666 3334455566666
Q ss_pred HHHHHHHHc---------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH-----------
Q 004340 641 YLGTAMHAL---------KRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELK-EY----------- 699 (760)
Q Consensus 641 ~la~~~~~~---------g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al-~~----------- 699 (760)
.+|.+|... ...++|+.+|.++.+.+|+. ..-.+++.++...|...+....+++.. .+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 666665432 13567777777777777533 333455555555554333322222221 10
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004340 700 APRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 700 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
.-.+...+-.++.+..-.|++++|+.++++++.+.|..-.....+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ 346 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLE 346 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHH
Confidence 1124556667788888899999999999999998877654433333
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0051 Score=60.71 Aligned_cols=198 Identities=12% Similarity=0.062 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLE------GMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAM 540 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~l 540 (760)
..|..-+.+|...++|++|...+.++.+-...+.. ++...+.++..+..+.++..+++++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs------------- 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------- 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------
Confidence 34555677888889999999999998865443321 22222333333333333333333332
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 004340 541 GNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYGLGMVYLR 614 (760)
Q Consensus 541 a~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~------~~a~~~la~~~~~ 614 (760)
..|...|..+.|...+++|- -.....+.++|+.+|++++.+...+ .+.+-..+.++.+
T Consensus 99 -~lY~E~GspdtAAmaleKAa---------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 99 -ELYVECGSPDTAAMALEKAA---------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred -HHHHHhCCcchHHHHHHHHH---------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 23444444444444444433 2345567777888888877653322 3345556777888
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcC
Q 004340 615 QEKFEFSEHHFRMAFQI------SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD----KKNPLPMYQKANILLSLE 684 (760)
Q Consensus 615 ~g~~~~A~~~l~~al~~------~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~----p~~~~~~~~la~~~~~~g 684 (760)
..++++|-..+.+-... .+.....+.....++....+|..|.++++...++. +++..+.-+|-.. +..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccC
Confidence 88888887776654322 23333445555566666678888888888876653 3334444444433 3567
Q ss_pred CHHHHHHHHH
Q 004340 685 KFDEALEVLE 694 (760)
Q Consensus 685 ~~~eA~~~l~ 694 (760)
+.++..+++.
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 7777666554
No 231
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0084 Score=59.85 Aligned_cols=170 Identities=9% Similarity=0.003 Sum_probs=93.3
Q ss_pred cCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHH-HHHHH
Q 004340 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEV-VDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDM-KLSYL 522 (760)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~-~a~~~ 522 (760)
..+-..|+.+-..++..+|.+..+|...-.++..+ .+..+-++++..+++.+|.+.+.|...-.+...+|+.. .-..+
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 34455666666666666666555555555554443 24555556666666666666666666555555555544 44555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-c-----CCHHHHHHHHHHHHH
Q 004340 523 AQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA-L-----EDFENGIRSYQSALR 596 (760)
Q Consensus 523 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~-~-----g~~e~A~~~~~~al~ 596 (760)
...++..+..+-.+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... . -..+.-+.+..+.+.
T Consensus 136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~ 215 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKIL 215 (318)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666666666555544454432211111 1 123334445555566
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 004340 597 VDARHYNSWYGLGMVYLR 614 (760)
Q Consensus 597 ~~p~~~~a~~~la~~~~~ 614 (760)
..|++..+|..|.-++..
T Consensus 216 ~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 216 LVPNNESAWNYLKGLLEL 233 (318)
T ss_pred hCCCCccHHHHHHHHHHh
Confidence 666666666655555543
No 232
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.67 E-value=0.1 Score=61.19 Aligned_cols=263 Identities=13% Similarity=0.078 Sum_probs=175.5
Q ss_pred CHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CH
Q 004340 465 TGWVLSQVGKAYF-EVVDYLEAERAFTLARRASPY--S----LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRL---AP 534 (760)
Q Consensus 465 ~~~~l~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~---~~ 534 (760)
...+.+.+|.+++ +..+++.|..++++++.+... . ..+...++.++...+... |...+++.++.... ..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 5678899999988 789999999999999887643 2 223445667777777666 88888888876544 22
Q ss_pred HHH-HHH--HHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Q 004340 535 QSW-CAM--GNCYSLQKDHETALKNFQRAVQLN--PRFAYGH----TLCGHEYVALEDFENGIRSYQSALRVDA------ 599 (760)
Q Consensus 535 ~~~-~~l--a~~~~~~g~~~~A~~~~~kal~~~--p~~~~a~----~~la~~~~~~g~~e~A~~~~~~al~~~p------ 599 (760)
..| +.+ ...+...+++..|++.++...... ..+..++ ...+.++...+..+++++...++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 222 222 222333479999999999998875 3444433 3346666777878888888887754321
Q ss_pred ----CCHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HHh---CC------CC--------------------------
Q 004340 600 ----RHYNSWYGLGM--VYLRQEKFEFSEHHFRMA---FQI---SP------HS-------------------------- 635 (760)
Q Consensus 600 ----~~~~a~~~la~--~~~~~g~~~~A~~~l~~a---l~~---~p------~~-------------------------- 635 (760)
....+|..+-. ++...|+++.+...+++. ++. .+ ++
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 12344544443 456677777776665443 221 11 00
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------CC-------------------hHHHHHHHHHHHHcCC
Q 004340 636 ----SVIMSYLGTAMHALKRSGEAIEMMEKAILADK-------KN-------------------PLPMYQKANILLSLEK 685 (760)
Q Consensus 636 ----~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p-------~~-------------------~~~~~~la~~~~~~g~ 685 (760)
.-+|..-|......+..+.|.++++++++.-. .. ..+.+..+.+.+-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 01233335566667777788888888875421 10 0234567788888999
Q ss_pred HHHHHHHHHHHHHHC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 686 FDEALEVLEELKEYA---PR------ESGVYALMGKIYKRRNMHEKAMLHFG 728 (760)
Q Consensus 686 ~~eA~~~l~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 728 (760)
+..|...++.+.... |. .+.+++..|..+...|+.+.|..+|.
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 999999999887653 22 37789999999999999999999998
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.63 E-value=0.015 Score=63.17 Aligned_cols=112 Identities=14% Similarity=0.121 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CC-------
Q 004340 634 HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK----KNPLPMYQKANILLSLEKFDEALEVLEELKEY-AP------- 701 (760)
Q Consensus 634 ~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p------- 701 (760)
.....|...+.+..+.|.++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.. ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 3455667777777777777777777777766442 14566666777777777777777777666651 00
Q ss_pred --------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004340 702 --------------------------RESGVYALMGKIYKRR------NMHEKAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 702 --------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
..+.++..+|...... +..+++...|.++.+++|+...++...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 0135677777777777 8899999999999999999887766544
No 234
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0069 Score=70.20 Aligned_cols=170 Identities=14% Similarity=0.018 Sum_probs=101.1
Q ss_pred HHHHHhcCChHHHHHHHhcccc----------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Q 004340 439 GYRMSCMYRCKDALDVYLKLPH----------------------KHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRAS 496 (760)
Q Consensus 439 a~~~~~~g~~~eAi~~l~~~~~----------------------~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~ 496 (760)
|...+..+-|++|..+|++.-. ...+.+.+|..+|.+-++.|...+|++.|-++
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 4444556667777777776310 11245677888888888888888888877665
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 497 PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGH 576 (760)
Q Consensus 497 p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~ 576 (760)
+++..+.....+....|.+++...++.-+-+.-.. +..-..+..+|.+.++..+-.++. ..|+.+ -.-..|.
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi-----~gpN~A-~i~~vGd 1202 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFI-----AGPNVA-NIQQVGD 1202 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHh-----cCCCch-hHHHHhH
Confidence 44555666666677777777777766555443221 222223334444455544433322 233332 2334566
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMA 628 (760)
Q Consensus 577 ~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~a 628 (760)
-++..+.|+.|.-+|.. ..-|..|+..+..+|+|..|....++|
T Consensus 1203 rcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 66777777777666654 344667777777777777777777665
No 235
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.61 E-value=0.084 Score=55.42 Aligned_cols=228 Identities=17% Similarity=0.115 Sum_probs=137.8
Q ss_pred HHHccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHH
Q 004340 476 YFEVVDYLEAERAFTLARRAS-PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK-DHETA 553 (760)
Q Consensus 476 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A 553 (760)
....|+++.|..++.++-... ..++.....++ ..++..|......+ +++.|
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La---------------------------~~~yn~G~~l~~~~~~~~~a 55 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELA---------------------------RVCYNIGKSLLSKKDKYEEA 55 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHH---------------------------HHHHHHHHHHHHcCCChHHH
Confidence 356788888888888876654 33333333333 55677788888888 99999
Q ss_pred HHHHHHHHHh----CC---C-------CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 554 LKNFQRAVQL----NP---R-------FAYGHTLCGHEYVALEDFE---NGIRSYQSALRVDARHYNSWYGLGMVYLRQE 616 (760)
Q Consensus 554 ~~~~~kal~~----~p---~-------~~~a~~~la~~~~~~g~~e---~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 616 (760)
..+++++.++ .+ . ...++..++.+|...+.++ +|..+.+.+-...|+.+..+...-.++.+.+
T Consensus 56 ~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~ 135 (278)
T PF08631_consen 56 VKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSF 135 (278)
T ss_pred HHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccC
Confidence 9999998876 21 1 1245677888888877755 4555555565667777777766666666688
Q ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHH-HHHcCChHHHHHHHHHHHHh--CCCChHHHHHH---HHHHHHcC--C--
Q 004340 617 KFEFSEHHFRMAFQISPHS-SVIMSYLGTA-MHALKRSGEAIEMMEKAILA--DKKNPLPMYQK---ANILLSLE--K-- 685 (760)
Q Consensus 617 ~~~~A~~~l~~al~~~p~~-~~~~~~la~~-~~~~g~~~eAl~~l~~al~~--~p~~~~~~~~l---a~~~~~~g--~-- 685 (760)
+.+++.+.+.+++..-+-. ...-..+..+ .........|...+...+.. .|.... +... ..++...+ +
T Consensus 136 ~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~ 214 (278)
T PF08631_consen 136 DEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLS 214 (278)
T ss_pred ChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCcccc
Confidence 9999999999988765422 2211112222 11223445677777666643 222221 3222 22222222 1
Q ss_pred ----HHHHHHHHHHHHHH--CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 686 ----FDEALEVLEELKEY--APRE-------SGVYALMGKIYKRRNMHEKAMLHFGLAL 731 (760)
Q Consensus 686 ----~~eA~~~l~~al~~--~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al 731 (760)
.+.....+...... .|-. ...++..|...++.++|++|..+|+-++
T Consensus 215 ~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 215 SSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22232333322221 1211 2356777888999999999999999876
No 236
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00047 Score=67.61 Aligned_cols=93 Identities=19% Similarity=0.302 Sum_probs=77.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 004340 573 LCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRS 652 (760)
Q Consensus 573 ~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 652 (760)
.-|..++....|+.|+.+|.+++.++|..+..|.+.+.++++..+|+.+..-.++++++.|+.....+.+|.++.....|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34666777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 004340 653 GEAIEMMEKAILA 665 (760)
Q Consensus 653 ~eAl~~l~~al~~ 665 (760)
++|+..++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888888654
No 237
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00078 Score=66.21 Aligned_cols=122 Identities=19% Similarity=0.140 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~ 681 (760)
..++..-|.-+++.|+|.+|...|+.|+.. +-.+..+.+-.+. + .++++......+.+++.|+.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~----------l~~L~lkEkP~e~--e----W~eLdk~~tpLllNy~QC~L 241 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIIC----------LRNLQLKEKPGEP--E----WLELDKMITPLLLNYCQCLL 241 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHH----------HHHHHhccCCCCh--H----HHHHHHhhhHHHHhHHHHHh
Confidence 456677777788888888888887776532 1111111110000 0 11222223346778888888
Q ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004340 682 SLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 682 ~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
..|+|-++++.....+...|.+..+|+..|.++...=+.++|...|.++++++|.-..
T Consensus 242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 8899999999988888888988889999999888888888999999999998888654
No 238
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.006 Score=70.65 Aligned_cols=131 Identities=11% Similarity=0.056 Sum_probs=88.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 004340 472 VGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHE 551 (760)
Q Consensus 472 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 551 (760)
+|.+....+-|++|..+|++. .-+..+... +..+.+..++|..++++. +.+..|..+|.+..+.|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 566677777888888888763 112222222 233445566666666554 45899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004340 552 TALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEF 620 (760)
Q Consensus 552 ~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 620 (760)
+|++.|-+| +++..|.....+..+.|.|++-+.++..+-+.... +..-..|..+|.+.++..+
T Consensus 1122 dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHH
Confidence 999999775 66778888888999999999999988887664322 2222233344444444443
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.52 E-value=0.00025 Score=51.56 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 004340 672 PMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMG 711 (760)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la 711 (760)
+++.+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555555444
No 240
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.52 E-value=0.039 Score=62.02 Aligned_cols=276 Identities=14% Similarity=0.047 Sum_probs=146.1
Q ss_pred hcCChHHHHHHHhcc------cc----cCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 004340 444 CMYRCKDALDVYLKL------PH----KHYNT-GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH 512 (760)
Q Consensus 444 ~~g~~~eAi~~l~~~------~~----~~p~~-~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 512 (760)
...++++|+++|++- ++ ..|.. ...--..|.-+...|+++.|+..|-.+-.+ .....+...
T Consensus 673 ki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~--------~kaieaai~ 744 (1636)
T KOG3616|consen 673 KIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL--------IKAIEAAIG 744 (1636)
T ss_pred HhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------HHHHHHHhh
Confidence 344567777776652 11 12221 112233466667788888888887665321 222233334
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 513 LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQ 592 (760)
Q Consensus 513 l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~ 592 (760)
.+++.+|+.+++.+....- ....|-.++.-|...|+++.|.++|.++-.. ......|.+.|+|++|.+.-+
T Consensus 745 akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~~~--------~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEADLF--------KDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcchh--------HHHHHHHhccccHHHHHHHHH
Confidence 4556666666554433221 2234556777888888888888887765321 122345667777777766665
Q ss_pred HHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH------HHHHh-----------------CCCC-HHHHHHHHHHHH
Q 004340 593 SALRVDARH-YNSWYGLGMVYLRQEKFEFSEHHFR------MAFQI-----------------SPHS-SVIMSYLGTAMH 647 (760)
Q Consensus 593 ~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~l~------~al~~-----------------~p~~-~~~~~~la~~~~ 647 (760)
++.. |.. ...|...+.-+...|+|.+|.+.|- +++++ .|+. ......+|.-+.
T Consensus 816 e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e 893 (1636)
T KOG3616|consen 816 ECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELE 893 (1636)
T ss_pred HhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHH
Confidence 5432 221 2334444444555555555544331 11111 1211 234455666677
Q ss_pred HcCChHHHHHHHHHHHHh------CCC-----------------Ch--HHHHHH---------HHHHHHcCCHHHHHHH-
Q 004340 648 ALKRSGEAIEMMEKAILA------DKK-----------------NP--LPMYQK---------ANILLSLEKFDEALEV- 692 (760)
Q Consensus 648 ~~g~~~eAl~~l~~al~~------~p~-----------------~~--~~~~~l---------a~~~~~~g~~~eA~~~- 692 (760)
..|+...|...|-++-.. ... +. .+.+.. ..++-+.|-.++|+..
T Consensus 894 ~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a 973 (1636)
T KOG3616|consen 894 AEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFA 973 (1636)
T ss_pred hccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhh
Confidence 777777776666554321 100 00 011111 1122333444444332
Q ss_pred -----HHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004340 693 -----LEELKEY-----APRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSAT 738 (760)
Q Consensus 693 -----l~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 738 (760)
|+-+.++ ....+.++..++..+...|++++|-++|-++++++.-+.
T Consensus 974 ~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 974 ADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred hcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 1111111 123467889999999999999999999999999876554
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.50 E-value=0.00023 Score=51.74 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la 575 (760)
.+|..+|..|...|++++|++.|+++++.+|+++.+|..+|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555555555555555555555555555555555555554
No 242
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.013 Score=56.24 Aligned_cols=130 Identities=20% Similarity=0.177 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 620 FSEHHFRMAFQISPHSSV---IMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQKANILLSLEKFDEALEVL 693 (760)
Q Consensus 620 ~A~~~l~~al~~~p~~~~---~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l 693 (760)
+.....++....++.... ....++..+...|++++|+..++.++....+. ..+-..+|.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444555565656655533 34567888899999999999999888654433 345677999999999999999988
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 004340 694 EELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEKL 750 (760)
Q Consensus 694 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l 750 (760)
+....-. =.+......|+++...|+.++|+..|+++++.+++......+...|..+
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lqmKLn~L 205 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQMKLNNL 205 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHHhHHHhc
Confidence 7653311 0234567789999999999999999999999986665433333345444
No 243
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.47 E-value=0.049 Score=59.72 Aligned_cols=186 Identities=10% Similarity=0.013 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 004340 550 HETALKNFQRAVQL-NPRFAYGHTLCGHEYVALE---DFENGIRSYQSALRVDARH-YNSWYGLGMVYLRQEKFEFSEHH 624 (760)
Q Consensus 550 ~~~A~~~~~kal~~-~p~~~~a~~~la~~~~~~g---~~e~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~ 624 (760)
-++|..+|++++.- ...+...++.++..-...- .++.....+.+++.+...+ .-+|..+...-.+..-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 56667777776653 2223334444443322222 3566666777776654333 23444555555555556777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CC
Q 004340 625 FRMAFQISPHSSVIMSYLGTA-MHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEY--AP 701 (760)
Q Consensus 625 l~~al~~~p~~~~~~~~la~~-~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p 701 (760)
|.++-+..-..-.++..-|.+ |.-.++.+-|.++|+-.++..++.+..-......+..+++-..|..+|++++.. .+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 777765433332333333333 334567777888888888888777777777777777778878888888887765 33
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 702 R-ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 702 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
+ ...+|-.+-..-..-|+...+++.=++-....|
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 2 245666666666777777777776666655555
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.45 E-value=0.00021 Score=48.64 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCc
Q 004340 101 AAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPL 133 (760)
Q Consensus 101 a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~ 133 (760)
|-+++.+|.+|..+++.++|+++|++||++||.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 347999999999999999999999999999995
No 245
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.45 E-value=0.2 Score=58.45 Aligned_cols=231 Identities=13% Similarity=0.036 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--
Q 004340 499 SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRL---------APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF-- 567 (760)
Q Consensus 499 ~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~-- 567 (760)
++.....++..+....++.++..+..++...-+. .++..-..|.+....|++++|+++.+.++..-|..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3445556666666677777777766666544332 12344455677778888888888888888876543
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHH--HHHHHHHHHHcCC--HHHHHHHHHHHH----HhC
Q 004340 568 ---AYGHTLCGHEYVALEDFENGIRSYQSALRVDA----RHYNS--WYGLGMVYLRQEK--FEFSEHHFRMAF----QIS 632 (760)
Q Consensus 568 ---~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p----~~~~a--~~~la~~~~~~g~--~~~A~~~l~~al----~~~ 632 (760)
..++..+|.+..-.|++++|..+...+.+... ....+ ....+.++..+|+ +.+.+..+...- ...
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 34566778888888888888888888877632 22233 3344667777773 333333333222 223
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-H
Q 004340 633 PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD----KKNP---LPMYQKANILLSLEKFDEALEVLEELKEYAPRE-S 704 (760)
Q Consensus 633 p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~----p~~~---~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~ 704 (760)
|.........+.++...-+++.+..-....++.. |... ..++.++.+++..|++++|...+..+..+.... +
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 3333333444444443333666655555555443 2211 223478888888899999988888876653221 1
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 705 ------GVYALMGKIYKRRNMHEKAMLHFGL 729 (760)
Q Consensus 705 ------~~~~~la~~~~~~g~~~~A~~~~~~ 729 (760)
.++..........|+..+|.....+
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1122222333456888888777766
No 246
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.44 E-value=0.00016 Score=77.88 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 004340 607 GLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKF 686 (760)
Q Consensus 607 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 686 (760)
.-+..++..+.|+.|+..|.++++++|+.+..+.+.+.++.+.+++..|+.-+.+|++.+|....+|+..|.+...++++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34555566667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 687 DEALEVLEELKEYAPRESGVYALMGKIYK 715 (760)
Q Consensus 687 ~eA~~~l~~al~~~p~~~~~~~~la~~~~ 715 (760)
.+|+..|++...+.|+++.+...+..|-.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 77777777777777777766666655543
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0065 Score=62.05 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS-LEGMDIYSTVL 510 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~l 510 (760)
.-..+.++..++..|++.+|...|..+....|.+..+...++.+|...|+.+.|..++...-...... ...+......+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34567788888999999999999999999999999999999999999999999988887643222211 01101111122
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 004340 511 YHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN 564 (760)
Q Consensus 511 ~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~ 564 (760)
.+.....+. ..+++.+..+|++.++-+.+|..+...|+.++|++.+-..++.+
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222111111 12334445566666666666666666666666666665555543
No 248
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.36 E-value=0.0003 Score=75.88 Aligned_cols=109 Identities=18% Similarity=0.143 Sum_probs=95.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004340 572 TLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR 651 (760)
Q Consensus 572 ~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 651 (760)
-..+..++..++|+.|+..|.++++++|+.+..+-..+.++.+.+++..|+.-+.++++.+|....+|+..|.+....++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34566777888999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 004340 652 SGEAIEMMEKAILADKKNPLPMYQKANIL 680 (760)
Q Consensus 652 ~~eAl~~l~~al~~~p~~~~~~~~la~~~ 680 (760)
+.+|+..|+....+.|+++.+...+..|-
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 99999999999999999988776666653
No 249
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.33 E-value=0.059 Score=56.98 Aligned_cols=184 Identities=18% Similarity=0.184 Sum_probs=117.4
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 004340 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA----LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR----QEK 617 (760)
Q Consensus 546 ~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~----~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~ 617 (760)
..+++..|...+.++-.. .+..+...++.+|.. ..+..+|..+|+.+. ...++.+.+.+|.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccC
Confidence 445566666666665542 222555556666554 345666777777333 34456666667777665 346
Q ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc----C---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCC
Q 004340 618 FEFSEHHFRMAFQISPHS-SVIMSYLGTAMHAL----K---RSGEAIEMMEKAILADKKNPLPMYQKANILLS----LEK 685 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~----g---~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~----~g~ 685 (760)
..+|..+|+++.+..-.. ......+|.++..- + +...|+..|.++.... ++.+.+.+|.+|.. ..+
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence 777777777776654333 23355566665543 1 2236778888777665 66777778877754 237
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCChH
Q 004340 686 FDEALEVLEELKEYAPRESGVYALMGKIYKRRN---------------MHEKAMLHFGLALDLKPSAT 738 (760)
Q Consensus 686 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~l~p~~~ 738 (760)
+.+|..+|.++-+... ....+.++ ++...| +...|..++..+-...+...
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 8888888888877665 77777777 666555 88888999988887665554
No 250
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.31 E-value=0.1 Score=60.38 Aligned_cols=258 Identities=15% Similarity=0.119 Sum_probs=177.2
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcC--
Q 004340 481 DYLEAERAFTLARRASPYSLEGMDIYSTVLYHL-----KEDMKLSYLAQELITT-----DRLAPQSWCAMGNCYSLQK-- 548 (760)
Q Consensus 481 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l-----~~~~~a~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-- 548 (760)
+..+|..+|+.+-+. .+..+...++.++..- ++.+.+..+++.+.+. ....+.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888877654 4677788888888776 3688888888888661 1225667889999998843
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCH
Q 004340 549 ---DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE---DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ----EKF 618 (760)
Q Consensus 549 ---~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g---~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~----g~~ 618 (760)
++..|+.+|.++.... ++.+.+.+|.+|..-. ++..|..+|..|.+. .+..+.+.++.+|..- .+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 7888999999998774 4677888888888755 678999999998764 5678889999988753 578
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCChHH---HH-HHHHHHHH----cCCHHHH
Q 004340 619 EFSEHHFRMAFQISPHSSVIMSYLGTAMHAL-KRSGEAIEMMEKAILADKKNPLP---MY-QKANILLS----LEKFDEA 689 (760)
Q Consensus 619 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~eAl~~l~~al~~~p~~~~~---~~-~la~~~~~----~g~~~eA 689 (760)
..|..++.++.+.. .+.+...++..+..- ++++.+.-.+....+..-..+.. ++ ........ ..+.+.+
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 99999999999887 444444554444332 77777776666655544322211 11 11111111 1245666
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 004340 690 LEVLEELKEYAPRESGVYALMGKIYKRR----NMHEKAMLHFGLALDLKPSATDVATIKAAIEKLH 751 (760)
Q Consensus 690 ~~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l~ 751 (760)
...+.++.. ..+..+...+|.+|..- .+++.|...|.++.... ......+..+.+.|
T Consensus 459 ~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g 519 (552)
T KOG1550|consen 459 FSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHG 519 (552)
T ss_pred HHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcC
Confidence 666666544 44678889999998765 36999999999998876 44445555554443
No 251
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.12 Score=56.07 Aligned_cols=215 Identities=14% Similarity=0.130 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Q 004340 426 ASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTG-------WVLSQVGKAYFEVVDYLEAERAFTLARRASPY 498 (760)
Q Consensus 426 ~~~l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~-------~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~ 498 (760)
...++....-+-.||....+.--++|+...+++.+.+-..+ ..+-.+..|-.-.|++.+|++....+.+....
T Consensus 276 LV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r 355 (629)
T KOG2300|consen 276 LVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTR 355 (629)
T ss_pred hhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 33444444444566666666666777777777665553222 23444566667789999999888887765432
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHH--HHHHHH
Q 004340 499 SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR-FAY--GHTLCG 575 (760)
Q Consensus 499 ~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~-~~~--a~~~la 575 (760)
.+.-... ....+...+.+|......+.++.|...|..|.++-.. +.. +-.++|
T Consensus 356 ~p~~~Ll------------------------r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 356 FPTPLLL------------------------RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA 411 (629)
T ss_pred CCchHHH------------------------HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Confidence 2221100 0123567788999999999999999999999887432 223 345688
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 004340 576 HEYVALEDFENGIRSYQSALRVDARH----------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVIM 639 (760)
Q Consensus 576 ~~~~~~g~~e~A~~~~~~al~~~p~~----------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~ 639 (760)
..|...|+-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+++.++..... .-.+
T Consensus 412 i~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred HHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 889887776554444333 34432 3456777788888889999988888888775211 2234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004340 640 SYLGTAMHALKRSGEAIEMMEKAILADK 667 (760)
Q Consensus 640 ~~la~~~~~~g~~~eAl~~l~~al~~~p 667 (760)
..++.+..-.|+..++.+...-++++..
T Consensus 489 vLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred HHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 5677777788888888888777776643
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.31 E-value=0.069 Score=60.34 Aligned_cols=174 Identities=16% Similarity=0.122 Sum_probs=115.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----hcCCHHHHHHHH
Q 004340 489 FTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA-PQS------WCAMGNCYS----LQKDHETALKNF 557 (760)
Q Consensus 489 ~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~-~~~------~~~la~~~~----~~g~~~~A~~~~ 557 (760)
|.-++.+-|.. +..+..+.--.|+.+....++.++.+...-. +.+ |+.....+. .....+.|.+++
T Consensus 180 f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL 256 (468)
T PF10300_consen 180 FNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELL 256 (468)
T ss_pred HHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHH
Confidence 44444544432 2222333334466777777776665532221 211 111111111 245677888899
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004340 558 QRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR----HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP 633 (760)
Q Consensus 558 ~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p 633 (760)
....+..|+.....+..|+++...|+.++|++.|++++..... ..-.++.+|.++..+.+|++|..+|.+..+.+.
T Consensus 257 ~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 257 EEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 9999999998888888999999999999999999988743221 234578889999999999999999998888765
Q ss_pred CCH-HHHHHHHHHHHHcCCh-------HHHHHHHHHHHHh
Q 004340 634 HSS-VIMSYLGTAMHALKRS-------GEAIEMMEKAILA 665 (760)
Q Consensus 634 ~~~-~~~~~la~~~~~~g~~-------~eAl~~l~~al~~ 665 (760)
-.. ...+..|.++...|+. ++|.++|.++-..
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 433 3445667888888888 7777777777654
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.012 Score=60.23 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-YNSWYGLGMVYL 613 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~-~~a~~~la~~~~ 613 (760)
+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-...... ..........+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 4445555566666777777777777777777777777777777777777776666655432211111 111000111222
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~ 665 (760)
+.....+. ..+++.+..+|++..+.+.+|..+...|++++|++.+-..+..
T Consensus 215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22222211 2233444455555555555555555555555555555555544
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.29 E-value=0.00043 Score=46.97 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCc
Q 004340 101 AAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPL 133 (760)
Q Consensus 101 a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~ 133 (760)
|.+++.+|.+|..+|+.++|+++|.+||+++|-
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 457999999999999999999999999999995
No 255
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0073 Score=59.59 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFTLARRA--------SPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWC 538 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~ 538 (760)
.++...|.-++..|+|++|...|..|+.. .|..++ .++++......+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e------------------------W~eLdk~~tpLll 234 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE------------------------WLELDKMITPLLL 234 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH------------------------HHHHHHhhhHHHH
Confidence 45667777777888888887777776542 233322 1122222334555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004340 539 AMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH 601 (760)
Q Consensus 539 ~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~ 601 (760)
+.+.|+...|+|-++++.....+..+|.+..+|+..|.++...-+.++|..-|.++++++|.-
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 666666666777777777777777777777777777766666666667777777776666654
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.25 E-value=0.21 Score=52.37 Aligned_cols=227 Identities=13% Similarity=0.004 Sum_probs=128.5
Q ss_pred HHhcCChHHHHHHHhcccccC----CC----CHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCC-------CHHHHHH
Q 004340 442 MSCMYRCKDALDVYLKLPHKH----YN----TGWVLSQVGKAYFEVV-DYLEAERAFTLARRASPY-------SLEGMDI 505 (760)
Q Consensus 442 ~~~~g~~~eAi~~l~~~~~~~----p~----~~~~l~~la~~~~~~g-~~~~A~~~~~~al~~~p~-------~~~~~~~ 505 (760)
...+|+++.|..++.++.... |. -..+++..|...+..+ ++++|..+++++.+.-.. .++....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356889999999999875433 32 3457888899999999 999999999999886211 1111010
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 506 YSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHE---TALKNFQRAVQLNPRFAYGHTLCGHEYVALE 582 (760)
Q Consensus 506 la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~---~A~~~~~kal~~~p~~~~a~~~la~~~~~~g 582 (760)
...++..++.+|...+.++ +|..+++.+....|+.+..+...-.+....+
T Consensus 83 ---------------------------r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~ 135 (278)
T PF08631_consen 83 ---------------------------RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSF 135 (278)
T ss_pred ---------------------------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccC
Confidence 1234556677777666554 3444555555556666666655555565677
Q ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH---HHHHcC--C-
Q 004340 583 DFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI--SPHSSVIMSYLGT---AMHALK--R- 651 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~---~~~~~g--~- 651 (760)
+.+++.+.+.+++...+-. ..........+.. .....|...+...+.. .|.... +..... ++...+ +
T Consensus 136 ~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~ 213 (278)
T PF08631_consen 136 DEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDL 213 (278)
T ss_pred ChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccc
Confidence 7888888888877754311 1221121211222 3344566666555543 222211 222111 111111 1
Q ss_pred -----hHHHHHHHHHHHHh--CCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 652 -----SGEAIEMMEKAILA--DKKNP-------LPMYQKANILLSLEKFDEALEVLEELK 697 (760)
Q Consensus 652 -----~~eAl~~l~~al~~--~p~~~-------~~~~~la~~~~~~g~~~eA~~~l~~al 697 (760)
.+....++....+. .|-.. ..+++.|...++.++|++|+.+|+-++
T Consensus 214 ~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 214 SSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222333322211 12121 345678888999999999999998765
No 257
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.23 E-value=0.56 Score=52.65 Aligned_cols=299 Identities=13% Similarity=0.037 Sum_probs=206.1
Q ss_pred HHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHH
Q 004340 449 KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH-LKEDMKLSYLAQELI 527 (760)
Q Consensus 449 ~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-l~~~~~a~~~~~~~l 527 (760)
+.+...|...+...|...-.|...|..-++.|..+.+.+.|++++.-.|...+.|..|...+.. -++.......++.+.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 6677778888999999888999999999999999999999999999999988888777655544 456677788888888
Q ss_pred HhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHh-
Q 004340 528 TTDRL---APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA------LEDFENGIRSYQSALRV- 597 (760)
Q Consensus 528 ~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~------~g~~e~A~~~~~~al~~- 597 (760)
..... ....|-..-..-..++++..-...|++.++.--....-++..=.-+.. .-..++++..-......
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 76554 346777777777888999999999999987633322222221111111 22334433332222210
Q ss_pred --------------------CCCC--HHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHH
Q 004340 598 --------------------DARH--YNSWYGLG-------MVYLRQEKFEFSEHHFRMAFQI-----SPHS---SVIMS 640 (760)
Q Consensus 598 --------------------~p~~--~~a~~~la-------~~~~~~g~~~~A~~~l~~al~~-----~p~~---~~~~~ 640 (760)
.|.. ......+. .++.......+.+..++..++. .|.+ ...|.
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~ 301 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR 301 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence 0000 00111111 1222333334444445544432 2222 34566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCC
Q 004340 641 YLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEY-APRESGVYALMGKIYKRRNM 719 (760)
Q Consensus 641 ~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p~~~~~~~~la~~~~~~g~ 719 (760)
.........|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++ .|..+.++..-+.+-...|+
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n 381 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGN 381 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhcc
Confidence 67777788899999999999998888888889999898888889988888888887776 46677888888888888999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004340 720 HEKAMLHFGLALDLKPSATDVATIKAAI 747 (760)
Q Consensus 720 ~~~A~~~~~~al~l~p~~~~a~~~l~~l 747 (760)
+..|...+++..+-.|....+.....-+
T Consensus 382 ~~~A~~~lq~i~~e~pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 382 FDDAKVILQRIESEYPGLVEVVLRKINW 409 (577)
T ss_pred HHHHHHHHHHHHhhCCchhhhHHHHHhH
Confidence 9999999999988778877765544433
No 258
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.21 E-value=0.00069 Score=46.05 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 705 GVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 705 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777777763
No 259
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.17 E-value=0.00051 Score=46.64 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC
Q 004340 101 AAGHYLMGLIYRYTDRRKNAIHHYKMALSIDP 132 (760)
Q Consensus 101 a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np 132 (760)
|-+++++|++|..+|+.++|..+|++|++++|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34799999999999999999999999999998
No 260
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.17 E-value=0.5 Score=50.96 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 004340 431 GLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA 495 (760)
Q Consensus 431 ~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 495 (760)
+++.++.....+-.+|.+++-.+.|+++....|-.+.+|...-.--+...+|.....+|.+++..
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 36666667777788999999999999998888865555544443344557788878777777764
No 261
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.16 E-value=0.00043 Score=47.15 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=10.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004340 593 SALRVDARHYNSWYGLGMVYLRQEKFEF 620 (760)
Q Consensus 593 ~al~~~p~~~~a~~~la~~~~~~g~~~~ 620 (760)
++++++|+++.+|+.+|.+|...|++++
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEE 31 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHh
Confidence 3333333333333333333333333333
No 262
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.15 E-value=0.00087 Score=45.41 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 705 GVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 705 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777776653
No 263
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.14 E-value=0.00045 Score=47.07 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=9.5
Q ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHH
Q 004340 696 LKEYAPRESGVYALMGKIYKRRNMHE 721 (760)
Q Consensus 696 al~~~p~~~~~~~~la~~~~~~g~~~ 721 (760)
+++++|+++.+|+.+|.+|...|+++
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~ 30 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYE 30 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHH
Confidence 33333333333333333333333333
No 264
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.14 E-value=0.019 Score=62.27 Aligned_cols=188 Identities=15% Similarity=0.140 Sum_probs=112.6
Q ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004340 480 VDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQR 559 (760)
Q Consensus 480 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k 559 (760)
..|+++...|..++... +++.+ -.++...|.+.+++..++.++..+|+++.|.+++++
T Consensus 8 ~~Y~~~q~~F~~~v~~~--Dp~~l--------------------~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleR 65 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSH--DPNAL--------------------INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLER 65 (360)
T ss_pred HHHHHHHHHHHHHHHcc--CHHHH--------------------HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677777777776643 33322 234577889999999999999999999999999988
Q ss_pred HHHhCCCCHHHHH-----H--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004340 560 AVQLNPRFAYGHT-----L--CGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (760)
Q Consensus 560 al~~~p~~~~a~~-----~--la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~ 632 (760)
|+-.........+ . .|.+...-...+ +.....+.+.....+.+.|-+..|.++.+-.+.++
T Consensus 66 ALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~e------------NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLd 133 (360)
T PF04910_consen 66 ALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPE------------NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLD 133 (360)
T ss_pred HHHHHHHHHHHHhhhhhcccccCccccCCcccc------------chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 8743211000000 0 000000000000 11113345556667777788888888888888888
Q ss_pred CC-CHHH-HHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcCCH---------------HHHH
Q 004340 633 PH-SSVI-MSYLGTAMHALKRSGEAIEMMEKAILADK-----KNPLPMYQKANILLSLEKF---------------DEAL 690 (760)
Q Consensus 633 p~-~~~~-~~~la~~~~~~g~~~eAl~~l~~al~~~p-----~~~~~~~~la~~~~~~g~~---------------~eA~ 690 (760)
|. |+.. ++.+-....+.++|+--+++++....... .-|...+..+.+++..++- ++|.
T Consensus 134 p~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~ 213 (360)
T PF04910_consen 134 PDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESAD 213 (360)
T ss_pred CCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHH
Confidence 77 5543 33344444566677766666666544211 1235566777777777777 7788
Q ss_pred HHHHHHHHHCC
Q 004340 691 EVLEELKEYAP 701 (760)
Q Consensus 691 ~~l~~al~~~p 701 (760)
..+.+|+...|
T Consensus 214 ~~L~~Ai~~fP 224 (360)
T PF04910_consen 214 EALQKAILRFP 224 (360)
T ss_pred HHHHHHHHHhH
Confidence 88888776655
No 265
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.14 E-value=0.049 Score=61.27 Aligned_cols=148 Identities=12% Similarity=0.131 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q 004340 570 GHTLCGHEYVALEDFENGIRSYQSA------LRV----DARH-YNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS------ 632 (760)
Q Consensus 570 a~~~la~~~~~~g~~e~A~~~~~~a------l~~----~p~~-~~a~~~la~~~~~~g~~~~A~~~l~~al~~~------ 632 (760)
.|-..|.+|.+..++++|+++|++. +++ .|.. ...-...|.-+...|+++.|+.+|-++-..-
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaa 742 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAA 742 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence 3445566777777888888887653 332 2221 1122334556667777777777665432100
Q ss_pred -------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 633 -------------------PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVL 693 (760)
Q Consensus 633 -------------------p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 693 (760)
..-...|-.++.-|...|+|+.|.++|.++- ........|.+.|++++|.++-
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHH
Confidence 0001123334444555555555555554431 1112234455555665555554
Q ss_pred HHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 694 EELKEYAPR-ESGVYALMGKIYKRRNMHEKAMLHF 727 (760)
Q Consensus 694 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~ 727 (760)
+++. .|. ....|...+.-+.+.|+|.+|...|
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 4442 122 1234455555566667777766655
No 266
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.10 E-value=0.012 Score=55.20 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 672 PMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|++.|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5566788888999999999999999999999999999999999999999999999988743
No 267
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=97.08 E-value=0.0015 Score=60.63 Aligned_cols=87 Identities=23% Similarity=0.268 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHhhccchhHHHHHHhhhhcCC-------------------------------CchhhHHHHHHHhhcCCH
Q 004340 3 GILTDCVQNSLRYFMYRNAIFLCERLCAEFP-------------------------------SEVNLQLLATCYLQNNQA 51 (760)
Q Consensus 3 ~~l~~~i~~~l~~~~~~~A~flaerl~a~~~-------------------------------~~~~~~llA~~~~~~~~~ 51 (760)
..||.+|+.|-+.++|+.|-..||.|+...+ .+.+.|+||..||-.+.|
T Consensus 11 ~~L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~yllAksyFD~kEy 90 (142)
T PF04049_consen 11 SELRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSSSPSSSQLSPSSPSEDQLESKEYDKYLLAKSYFDCKEY 90 (142)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCcccccccccccCCCccccCCCChhhhhhhhhHHHHHHHHHHHhchhHH
Confidence 4699999999999999999999999999981 123789999999999999
Q ss_pred HHHHHHhccCCCcchhHHHHHHHHhc---CChhHHHHhhCC
Q 004340 52 YAAYNILKGTQMALSRYLFAVACYQM---DLLSEAEAALSP 89 (760)
Q Consensus 52 ~~a~~~l~~~~~~~~~yl~a~c~~~l---~~~~ea~~~l~~ 89 (760)
.||.++|++++++.++||.--+-+-. .+.+|-+.++..
T Consensus 91 ~RaA~~L~~~~s~~~~FL~lYs~YLa~EKr~~Ee~~~~~~~ 131 (142)
T PF04049_consen 91 DRAAHVLKDCKSPKALFLRLYSRYLAGEKRKEEEMEESLGP 131 (142)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHHHHHhhhhHhhcCc
Confidence 99999999999999988776665533 345556666643
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.067 Score=60.08 Aligned_cols=190 Identities=11% Similarity=0.011 Sum_probs=117.3
Q ss_pred ChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHccCHHH
Q 004340 447 RCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS--------LEGMDIYSTVLYHLKEDMK 518 (760)
Q Consensus 447 ~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~la~~l~~l~~~~~ 518 (760)
..++|+...+. +| .+..|..+|......-+++.|...|-+.-....-. ..--...+.+-...|++++
T Consensus 678 gledA~qfiEd----nP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 678 GLEDAIQFIED----NP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred chHHHHHHHhc----CC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 34677776653 33 56899999999999999999998887653321100 0001123344444566666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 519 LSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL--NPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (760)
Q Consensus 519 a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~--~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~ 596 (760)
|..+|-.+-..| .-..++...|+|-...++++..-.- +.....++..+|..+..+..|++|.++|...-.
T Consensus 753 aek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 753 AEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666554332211 1122344556665555544432111 112346888999999999999999999887432
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004340 597 VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEK 661 (760)
Q Consensus 597 ~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~ 661 (760)
.-+++.+++...+|++-+. ....-|++...+-.+|.++...|--++|.+.|-+
T Consensus 825 --------~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 --------TENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred --------hHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 2356677777777766433 3334577777788888888888888888877654
No 269
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.05 E-value=0.32 Score=51.34 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCC
Q 004340 534 PQSWCAMGNCYSL----QKDHETALKNFQRAVQLNPRF-AYGHTLCGHEYVALE-------DFENGIRSYQSALRVDARH 601 (760)
Q Consensus 534 ~~~~~~la~~~~~----~g~~~~A~~~~~kal~~~p~~-~~a~~~la~~~~~~g-------~~e~A~~~~~~al~~~p~~ 601 (760)
+.+.+.+|.+|.. ..+..+|..+|.++....-.. ..+...+|..|..-. +...|+..|.++.... +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~ 186 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N 186 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence 4444555555544 335666666666666553222 233555555554431 1224555555554433 3
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 602 YNSWYGLGMVYLR----QEKFEFSEHHFRMAFQISPHSSVIMSYLG 643 (760)
Q Consensus 602 ~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la 643 (760)
..+.+.+|.+|.. ..++.+|..+|.++.+... ....+.++
T Consensus 187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 4455555544433 2245555555555554443 44444444
No 270
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.00 E-value=0.02 Score=53.69 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=72.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 004340 574 CGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKF-EFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRS 652 (760)
Q Consensus 574 la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~-~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 652 (760)
.|......++.+.++..+++++.+..+..-.-.. ...| ......++... ..+...++..+...|++
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLRELY------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCH
Confidence 3445556677788888888887764332110000 0111 11222222221 34566778888899999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 653 GEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 653 ~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
++|+..+++++..+|.+..++..+..+|...|+..+|++.|+++..
T Consensus 79 ~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 79 EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988754
No 271
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.00 E-value=0.45 Score=55.63 Aligned_cols=266 Identities=13% Similarity=-0.023 Sum_probs=169.4
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHH
Q 004340 463 YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL-EGMDIYSTVLYHLKEDMKLSYLAQELITTDR-----LAPQS 536 (760)
Q Consensus 463 p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p-----~~~~~ 536 (760)
+.-...+..-+..+...|...+|+++.-.+- +|... ..+...+.-+.+.++..-.. ..++.-| .+|..
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~--d~~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~~~l~~~P~L 417 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAG--DPEMAADLLEQLEWQLFNGSELSLLL----AWLKALPAELLASTPRL 417 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCC--CHHHHHHHHHhhhhhhhcccchHHHH----HHHHhCCHHHHhhCchH
Confidence 3446677777788888888888887755441 22211 11222222233333322222 2222222 35677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----H
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPR---------FAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-----Y 602 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~---------~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~-----~ 602 (760)
....+.......++++|..+..++...-+. .+......|.+....|++++|++..+.++..-|.. .
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 778888999999999999999888765332 12445567888889999999999999999986654 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--hHHHHHHHHHHHH----hCCCCh
Q 004340 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKR--SGEAIEMMEKAIL----ADKKNP 670 (760)
Q Consensus 603 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~--~~eAl~~l~~al~----~~p~~~ 670 (760)
.++..+|.+..-.|++++|..+...+.+..... ..+.+..+.++..+|+ +.+.+..+...-. ..|.+.
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 567788999999999999999999988773322 2334556788888883 3333333333222 233333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCC--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004340 671 LPMYQKANILLSLEKFDEALEVLEELKEYA----PRE--S-GVYALMGKIYKRRNMHEKAMLHFGLALDLK 734 (760)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~----p~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 734 (760)
......+.++...-+++.+.......++.. |.. . -+++.|+.++...|+.++|...+.....+-
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 333333444333333666666666655542 221 2 223589999999999999999998887643
No 272
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.026 Score=58.30 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF----AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~----~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la 609 (760)
+..+-.-|+-|+..++|..|+..|.+.++..-.+ +..|.+.|.+....|+|..|+.-+.+++.++|.+..+++.=|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3444555555566666666666666555542221 233445555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 004340 610 MVYLRQEKFEFSEHHFRMAF 629 (760)
Q Consensus 610 ~~~~~~g~~~~A~~~l~~al 629 (760)
.|++.+.++.+|..+++..+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 55555555555555555443
No 273
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.93 E-value=1.3 Score=51.90 Aligned_cols=293 Identities=7% Similarity=-0.066 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 004340 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH 512 (760)
Q Consensus 433 l~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 512 (760)
...|.++..++..|++..+..+..++ ..+|-.+++-+..-..-.....++ -+...++..|+.+..-......+..
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l~~ 108 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPLYPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFVNE 108 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCcHhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHHHH
Confidence 45677888999999999988877765 344543333322222212222333 4444556677766555555544444
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------------------HHHHHH
Q 004340 513 LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA------------------YGHTLC 574 (760)
Q Consensus 513 l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~------------------~a~~~l 574 (760)
+++...-..+.. .....|.+....|..+......|+.++|.....++.......+ ..+...
T Consensus 109 La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R 187 (644)
T PRK11619 109 LARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLER 187 (644)
T ss_pred HHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHH
Confidence 433222222222 2223477788888888888888888877776666654322111 112222
Q ss_pred HHHHHHcCCHHHHHHHHHHH-------------HHhCCC-----------CH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 575 GHEYVALEDFENGIRSYQSA-------------LRVDAR-----------HY--NSWYGLGMVYLRQEKFEFSEHHFRMA 628 (760)
Q Consensus 575 a~~~~~~g~~e~A~~~~~~a-------------l~~~p~-----------~~--~a~~~la~~~~~~g~~~~A~~~l~~a 628 (760)
....+..|+...|......+ +..+|. .. .....++..-....+.+.|...+.+.
T Consensus 188 ~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~ 267 (644)
T PRK11619 188 IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSL 267 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 33334444444443332211 111111 11 11223343344556677788877765
Q ss_pred HHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 004340 629 FQISPHSS----VIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (760)
Q Consensus 629 l~~~p~~~----~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 704 (760)
.....-+. .++..+|.-....+...+|..++..+..... +....-....+....++++.+...+..+-.......
T Consensus 268 ~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~ 346 (644)
T PRK11619 268 VRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKD 346 (644)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCH
Confidence 44443332 2334444444444336677777776553322 333444445555688899888888877654444567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 705 GVYALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 705 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
...|.+|+.+...|+.++|..+|+++..
T Consensus 347 rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 347 EWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8899999999999999999999999854
No 274
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.86 E-value=0.00058 Score=70.47 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=99.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 004340 607 GLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKF 686 (760)
Q Consensus 607 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 686 (760)
.-+.-.+..|.++.|++.|..++.++|....++...+.++.+++++..|++-|..+++++|+...-|-..+.+...+|++
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 34556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 687 DEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLAL 731 (760)
Q Consensus 687 ~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 731 (760)
++|...|..+.+++-+ ..+-..+-.+.-..+..++-...+++..
T Consensus 199 e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 9999999999988754 2333334444444444444444444443
No 275
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.84 E-value=0.084 Score=56.64 Aligned_cols=116 Identities=11% Similarity=0.015 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 004340 551 ETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR---QEKFEFSEHHFRM 627 (760)
Q Consensus 551 ~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~l~~ 627 (760)
+.-+.+|++|++.+|++...+..+-.+.....+.++..+-+++++..+|++...|..+...... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4556778888888888887777777777777778888888888888888877777665544333 2346666666666
Q ss_pred HHHhCC----C--------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004340 628 AFQISP----H--------------SSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (760)
Q Consensus 628 al~~~p----~--------------~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~ 666 (760)
++..-. . -..++..+...+...|..+.|+..++-.++.+
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 665310 0 02345566777778888888888888888875
No 276
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.84 E-value=0.26 Score=53.01 Aligned_cols=215 Identities=13% Similarity=0.096 Sum_probs=133.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 004340 522 LAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV---- 597 (760)
Q Consensus 522 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~---- 597 (760)
.++.++...+..++.|+.....+...++-+.|+....+++...|. ....++.+|....+-+....+|+++.+.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ 366 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK 366 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence 344445555555566666555556666666666655555554443 3334444454444444444444444321
Q ss_pred --------------CC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcC
Q 004340 598 --------------DA------------RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA-MHALK 650 (760)
Q Consensus 598 --------------~p------------~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~-~~~~g 650 (760)
++ ...-+|..+...-.+..-.+.|...|-++-+..-....++..-|.+ +...|
T Consensus 367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~ 446 (660)
T COG5107 367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG 446 (660)
T ss_pred HhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC
Confidence 00 0112233333333444556777778877765543333444443433 44578
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 651 RSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE--SGVYALMGKIYKRRNMHEKAMLHFG 728 (760)
Q Consensus 651 ~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~ 728 (760)
++.-|-.+|+-.+...|+++......-..+...++-+.|..+|+++++.-.+. ..+|-.+...-..-|+...+...=+
T Consensus 447 d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~ 526 (660)
T COG5107 447 DRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEE 526 (660)
T ss_pred CcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHH
Confidence 89999999999999999888777777778888999999999999887654333 4567777777777888888888888
Q ss_pred HHHhcCCChHH
Q 004340 729 LALDLKPSATD 739 (760)
Q Consensus 729 ~al~l~p~~~~ 739 (760)
+...+.|....
T Consensus 527 rf~e~~pQen~ 537 (660)
T COG5107 527 RFRELVPQENL 537 (660)
T ss_pred HHHHHcCcHhH
Confidence 88888887643
No 277
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0091 Score=61.55 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS----SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la 677 (760)
+.-+..-|.-|++..+|..|+..|.++++..-.+ ..+|.+.+.+....|+|..|+.-+.+++.++|.+..+++.-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 5567778999999999999999999999875444 456888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 678 NILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 678 ~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
.|++.+.++.+|..+.+..+.++.+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999998776654
No 278
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.80 E-value=0.094 Score=56.25 Aligned_cols=117 Identities=12% Similarity=0.034 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHHHHHH
Q 004340 584 FENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA---LKRSGEAIEMME 660 (760)
Q Consensus 584 ~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~---~g~~~eAl~~l~ 660 (760)
.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-+++++..+|.+..+|..+-..... .-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999988766554443 225677788887
Q ss_pred HHHHhCCC------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 004340 661 KAILADKK------------------NPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (760)
Q Consensus 661 ~al~~~p~------------------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 700 (760)
+++..-.. -..++..++..+.+.|..+.|+..++..++++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 77754210 01345567777788899999999999888864
No 279
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.79 E-value=0.053 Score=58.91 Aligned_cols=169 Identities=14% Similarity=0.026 Sum_probs=106.1
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 004340 562 QLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVI 638 (760)
Q Consensus 562 ~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~ 638 (760)
+..|.+.+++..++.++..+|+.+.|.+++++|+-.........+..-..-...|. +.--| ..+.+ ..+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~rL~~-----~~~eNR~ffla 105 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---CRLDY-----RRPENRQFFLA 105 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---cccCC-----ccccchHHHHH
Confidence 45666666666777777777777777666666653321110000000000000000 00000 01122 234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CCHHHHHHHH
Q 004340 639 MSYLGTAMHALKRSGEAIEMMEKAILADKK-NPLPM-YQKANILLSLEKFDEALEVLEELKEYAP-----RESGVYALMG 711 (760)
Q Consensus 639 ~~~la~~~~~~g~~~eAl~~l~~al~~~p~-~~~~~-~~la~~~~~~g~~~eA~~~l~~al~~~p-----~~~~~~~~la 711 (760)
++.....+.+.|-+..|+++.+-.+.++|. ||... +.+-....+.++|+--++.++....... .-|...+.++
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~a 185 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIA 185 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHH
Confidence 566778889999999999999999999999 77544 4444555677888888888877655211 1346778888
Q ss_pred HHHHHcCCH---------------HHHHHHHHHHHhcCCChH
Q 004340 712 KIYKRRNMH---------------EKAMLHFGLALDLKPSAT 738 (760)
Q Consensus 712 ~~~~~~g~~---------------~~A~~~~~~al~l~p~~~ 738 (760)
.++...++. ++|...+.+|+...|.-.
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 999999888 899999999999998754
No 280
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.71 Score=59.36 Aligned_cols=110 Identities=15% Similarity=0.032 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC----------
Q 004340 634 HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA-PR---------- 702 (760)
Q Consensus 634 ~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~---------- 702 (760)
.-...|...|.+....|+++.|..++-+|.+.. -+.++...|..++..|+-..|+.++++.++.. |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 346789999999999999999999999888876 57788899999999999999999999998653 22
Q ss_pred ------CHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCChHHHHHHHH
Q 004340 703 ------ESGVYALMGKIYKRRNMHE--KAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 703 ------~~~~~~~la~~~~~~g~~~--~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
...+...++......|+++ .-+++|+.+.++.|...+-+..++
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 0123445555555666643 467889999999996665544444
No 281
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.61 E-value=1.5 Score=47.73 Aligned_cols=132 Identities=11% Similarity=-0.013 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTG-----WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIY 506 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~-----~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 506 (760)
+.-...+|+.+..++++.+|..+|.++.+...+.+ .++..+-.-.+-+.+.+.-...+....+..|..+......
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~ 85 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK 85 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 55567899999999999999999999876655443 3444444455667888888888888888889888888888
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC--H-----------HHH--HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004340 507 STVLYHLKEDMKLSYLAQELITTDRLA--P-----------QSW--CAMGNCYSLQKDHETALKNFQRAVQL 563 (760)
Q Consensus 507 a~~l~~l~~~~~a~~~~~~~l~~~p~~--~-----------~~~--~~la~~~~~~g~~~~A~~~~~kal~~ 563 (760)
+...++.+.+.+|...+....+.-..+ + ..| ...|.++...|.+.++...+.+.+..
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 889999999999988776665542221 1 122 24577888999999999999988764
No 282
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.55 E-value=0.0023 Score=66.16 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=89.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 004340 574 CGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSG 653 (760)
Q Consensus 574 la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (760)
.+.-.+..|++++|++.|..++.++|.....+...+.++.+++++..|++-+..++.++|+...-|-..|.+...+|+|+
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 46677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 004340 654 EAIEMMEKAILADKK 668 (760)
Q Consensus 654 eAl~~l~~al~~~p~ 668 (760)
+|...+..+++++-+
T Consensus 200 ~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 200 EAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999998743
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.54 E-value=0.6 Score=52.81 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCY 544 (760)
Q Consensus 465 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~ 544 (760)
...++..+|..+..+..|++|.++|.+.-. ...++.+++++..+.+...+...+ |++...+-.+|..+
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la~~L----pe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLARTL----PEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHHHhc----CcccchHHHHHHHH
Confidence 345788899999999999999999987643 345678888888888776665544 66677777888899
Q ss_pred HhcCCHHHHHHHHHH
Q 004340 545 SLQKDHETALKNFQR 559 (760)
Q Consensus 545 ~~~g~~~~A~~~~~k 559 (760)
...|.-++|.+.|-+
T Consensus 863 ~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLR 877 (1189)
T ss_pred HhhchHHHHHHHHHh
Confidence 999998988887765
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.25 Score=47.61 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=37.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 004340 608 LGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE 684 (760)
Q Consensus 608 la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g 684 (760)
++..+...+++++|+..++.++....+. ..+-..++.+....|.+++|+..+....... -.+......|.++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcC
Confidence 3444444444444444444444322211 1223344444444444444444443321100 01112233444555555
Q ss_pred CHHHHHHHHHHHHHHC
Q 004340 685 KFDEALEVLEELKEYA 700 (760)
Q Consensus 685 ~~~eA~~~l~~al~~~ 700 (760)
+-++|+..|+++++..
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 5555555555554443
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.51 E-value=0.004 Score=42.14 Aligned_cols=32 Identities=38% Similarity=0.554 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 705 GVYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 705 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45677777777777777777777777777663
No 286
>PRK10941 hypothetical protein; Provisional
Probab=96.47 E-value=0.021 Score=59.05 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 004340 672 PMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEKLH 751 (760)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l~ 751 (760)
...++-.+|...++++.|+.+.+.++.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++++..++..+..+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 34567778889999999999999999999999988999999999999999999999999999999998888888887766
Q ss_pred CC
Q 004340 752 VP 753 (760)
Q Consensus 752 ~~ 753 (760)
..
T Consensus 263 ~~ 264 (269)
T PRK10941 263 QK 264 (269)
T ss_pred hc
Confidence 43
No 287
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.44 E-value=0.012 Score=44.41 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 004340 705 GVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEK 749 (760)
Q Consensus 705 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~ 749 (760)
+.++.+|..+.++|+|++|..+.+.+++++|++..+..++..++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 356778888888888888888888888888888888777776643
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.38 E-value=0.16 Score=47.65 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=38.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Q 004340 644 TAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMH 720 (760)
Q Consensus 644 ~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 720 (760)
.+-...++.+++..++...--+.|..+..-..-|++++..|+|.+|+.+|+.+.+..|..+.+--.++.|+..+|+.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33334444455555554444445555555555555555555555555555554444444444444555555555443
No 289
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=1.4 Score=56.76 Aligned_cols=304 Identities=12% Similarity=-0.054 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhcccc--cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Q 004340 424 TGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPH--KHYN-TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL 500 (760)
Q Consensus 424 ~~~~~l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~--~~p~-~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 500 (760)
++++.++++.....-+..-+.-+.|..|+-++++... ...+ ....++.+-.+|...++++.-.-.... ...+|.
T Consensus 1375 ~~v~~fL~~iP~~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s-- 1451 (2382)
T KOG0890|consen 1375 EGVQSFLDLIPSDTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS-- 1451 (2382)
T ss_pred hhhHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc--
Confidence 4455566666666666666777888888888887411 1111 223344445577777777766655543 112222
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH
Q 004340 501 EGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG-HEYV 579 (760)
Q Consensus 501 ~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la-~~~~ 579 (760)
+..........|++..|..+|+++++.+|+....+...-......|.+...+-..+-.....++...-+..++ .+..
T Consensus 1452 --l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW 1529 (2382)
T KOG0890|consen 1452 --LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAW 1529 (2382)
T ss_pred --HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHh
Confidence 2223334455677888888888888888887777777777777777777777766666555444444343333 2234
Q ss_pred HcCCHHHHHHHHH--------------HHHHhCCCCHHHH-HHHHHH----------HHHcCCHHHHHHHHHHHHH----
Q 004340 580 ALEDFENGIRSYQ--------------SALRVDARHYNSW-YGLGMV----------YLRQEKFEFSEHHFRMAFQ---- 630 (760)
Q Consensus 580 ~~g~~e~A~~~~~--------------~al~~~p~~~~a~-~~la~~----------~~~~g~~~~A~~~l~~al~---- 630 (760)
..++++.-..+.. ..+.....+.-+. -.+... ....|-|..+.++.-++..
T Consensus 1530 ~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1530 RLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred hhcchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 5555555444322 0011111111110 000000 0011122222222211110
Q ss_pred ---------hCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHH---hC----CCChHHHHHHHHHHHHcCCHHHH
Q 004340 631 ---------ISPHS-----SVIMSYLGTAMHALKRSGEAIEMMEKAIL---AD----KKNPLPMYQKANILLSLEKFDEA 689 (760)
Q Consensus 631 ---------~~p~~-----~~~~~~la~~~~~~g~~~eAl~~l~~al~---~~----p~~~~~~~~la~~~~~~g~~~eA 689 (760)
..+++ ..-|.+....-....+..+-+-.+++++- .. ..-.++|...|++....|+++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 11111 11222222211111223333334444332 22 23468899999999999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004340 690 LEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLK 734 (760)
Q Consensus 690 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 734 (760)
...+-.|.+.. -+.++...|+.++..|+...|+..+++.+..+
T Consensus 1690 ~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1690 QNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 99999998876 47899999999999999999999999999643
No 290
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.26 E-value=3.6 Score=48.41 Aligned_cols=262 Identities=13% Similarity=-0.038 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHH-hcCChHHHHHHHhcccccC--CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---C-H
Q 004340 432 LLRILGEGYRMS-CMYRCKDALDVYLKLPHKH--YNT----GWVLSQVGKAYFEVVDYLEAERAFTLARRASPY---S-L 500 (760)
Q Consensus 432 ll~~l~~a~~~~-~~g~~~eAi~~l~~~~~~~--p~~----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~---~-~ 500 (760)
....+.-|..++ ...++++|..++.+..... ++. ..+.+.++.++.+.+... |...+++.++.... . .
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 334444444444 6789999999999874433 222 234567788888888887 99999999986544 1 1
Q ss_pred HHHHHHH--HHHHHccCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCC-------
Q 004340 501 EGMDIYS--TVLYHLKEDMKLSYLAQELITTD--RLAPQSW----CAMGNCYSLQKDHETALKNFQRAVQLNP------- 565 (760)
Q Consensus 501 ~~~~~la--~~l~~l~~~~~a~~~~~~~l~~~--p~~~~~~----~~la~~~~~~g~~~~A~~~~~kal~~~p------- 565 (760)
...+.+. ......++...|...++.+.... ..++.+. +..+.++...+..+++++.++++.....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 1222222 22222368888999998888765 3444332 3346667777888888888888754311
Q ss_pred ---CCHHHHHHHHH--HHHHcCCHHHHHHHHHHHH---Hh---CC-------C-----------------C---------
Q 004340 566 ---RFAYGHTLCGH--EYVALEDFENGIRSYQSAL---RV---DA-------R-----------------H--------- 601 (760)
Q Consensus 566 ---~~~~a~~~la~--~~~~~g~~e~A~~~~~~al---~~---~p-------~-----------------~--------- 601 (760)
....+|..+-. ++...|+++.+...+++.- .. .+ + .
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~ 297 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKE 297 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHH
Confidence 12344444433 4455777666665544432 21 11 0 0
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C-------------------HHHHHHHHHHHHHcCCh
Q 004340 602 ---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH-------S-------------------SVIMSYLGTAMHALKRS 652 (760)
Q Consensus 602 ---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~-------------------~~~~~~la~~~~~~g~~ 652 (760)
.-+|..-|......+..++|.++++++++.-.+ . ..+....+.+.+-.+++
T Consensus 298 ~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~ 377 (608)
T PF10345_consen 298 ELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW 377 (608)
T ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 012333455666777777898888888764111 0 11345567777888999
Q ss_pred HHHHHHHHHHHHhC---CC------ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 653 GEAIEMMEKAILAD---KK------NPLPMYQKANILLSLEKFDEALEVLE 694 (760)
Q Consensus 653 ~eAl~~l~~al~~~---p~------~~~~~~~la~~~~~~g~~~eA~~~l~ 694 (760)
..|...+..+.... |. .+..++..|..+...|+.+.|+..|.
T Consensus 378 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 378 SKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 99999988877653 22 36778899999999999999999998
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.16 E-value=0.0077 Score=41.55 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 004340 103 GHYLMGLIYRYTDRRKNAIHHYKMALSI 130 (760)
Q Consensus 103 ~~~llg~i~~~~~~~~~A~~~~~~AL~~ 130 (760)
++.-||.+|.++|+.++|+++|++||.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999997755
No 292
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.16 E-value=0.069 Score=48.11 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=66.1
Q ss_pred ChHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 004340 669 NPLPMYQKANILLSLE---KFDEALEVLEELKE-YAPR-ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATI 743 (760)
Q Consensus 669 ~~~~~~~la~~~~~~g---~~~eA~~~l~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~ 743 (760)
.....+++|+++.... +..+.+.+|+..++ -.|. .-+..+.|+..+++.|+|++++.+.+..++..|++..+..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4567888999988765 45678889998886 4443 35678889999999999999999999999999999999888
Q ss_pred HHHHHh
Q 004340 744 KAAIEK 749 (760)
Q Consensus 744 l~~l~~ 749 (760)
+..++.
T Consensus 111 k~~ied 116 (149)
T KOG3364|consen 111 KETIED 116 (149)
T ss_pred HHHHHH
Confidence 887754
No 293
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.26 Score=54.48 Aligned_cols=83 Identities=6% Similarity=-0.201 Sum_probs=43.2
Q ss_pred HHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004340 449 KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS--LEGMDIYSTVLYHLKEDMKLSYLAQEL 526 (760)
Q Consensus 449 ~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~l~~~~~a~~~~~~~ 526 (760)
+...+.+.......|..+..++..|..+...|+.+.|+..++..+...-.. .-.++..+.++....++.+|...+..+
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444444455666666666677777777777666777776665510000 112233344444444555555555555
Q ss_pred HHhCC
Q 004340 527 ITTDR 531 (760)
Q Consensus 527 l~~~p 531 (760)
.+...
T Consensus 330 ~desd 334 (546)
T KOG3783|consen 330 RDESD 334 (546)
T ss_pred Hhhhh
Confidence 44443
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.96 E-value=0.17 Score=47.47 Aligned_cols=75 Identities=15% Similarity=-0.056 Sum_probs=68.6
Q ss_pred HHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Q 004340 441 RMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (760)
Q Consensus 441 ~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~ 515 (760)
..+..++.+++..++..+.-..|..+.+-..-|..+...|+|.+|+.+|+.+.+..|..+.+-..++.|++.+++
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 346677999999999999999999999999999999999999999999999999999999888999999988877
No 295
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=2.8 Score=46.68 Aligned_cols=66 Identities=14% Similarity=-0.028 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCh
Q 004340 672 PMYQKANILLSLEKFDEALEVLEELKEYA---PR----ESGVYALMGKIYKRRNM-HEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~l~~al~~~---p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~p~~ 737 (760)
.++.+|.++..+|+...|..+|..+++.. .. .|.++|.+|.+|..+|. ..++..++.+|-+...+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 35678999999999999999999887531 11 37899999999999999 999999999999876554
No 296
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.72 E-value=0.019 Score=38.31 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYS 499 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 499 (760)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367889999999999999999999999998863
No 297
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.68 E-value=0.39 Score=53.78 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=30.6
Q ss_pred HHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 004340 440 YRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARR 494 (760)
Q Consensus 440 ~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 494 (760)
+.++..|.+++|..+----. ...-|..+|.-.++.-+++-|.+.|.++..
T Consensus 564 ~q~Ieag~f~ea~~iaclgV-----v~~DW~~LA~~ALeAL~f~~ARkAY~rVRd 613 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGV-----TDTDWRELAMEALEALDFETARKAYIRVRD 613 (1081)
T ss_pred hhhhhccchhhhhcccccce-----ecchHHHHHHHHHhhhhhHHHHHHHHHHhc
Confidence 44566777777654322111 112255677777777888888888887754
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.64 E-value=0.23 Score=45.91 Aligned_cols=108 Identities=14% Similarity=0.025 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 511 (760)
++..+..|. ..++.+++..++..+.-..|+.+.+-..-|.++...|+|.+|+.+|+.+.+..+..+-+...++.|++
T Consensus 13 Li~~~~~aL---~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 13 LIEVLMYAL---RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 334444443 48899999999999999999999999999999999999999999999999988888888888999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004340 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAV 561 (760)
Q Consensus 512 ~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal 561 (760)
.+++ ..|...+.-....+...+|+.+.+...
T Consensus 90 al~D-------------------p~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 90 AKGD-------------------AEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred hcCC-------------------hHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 8876 345555555556666666665555443
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.55 E-value=0.021 Score=38.10 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 706 VYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 706 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.51 E-value=1.3 Score=44.79 Aligned_cols=188 Identities=18% Similarity=0.128 Sum_probs=100.2
Q ss_pred hcCChHHHHHHHhcccccCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CCHH-HHHHHHHHHHHc
Q 004340 444 CMYRCKDALDVYLKLPHKHYNTG----WVLSQVGKAYFEVVDYLEAERAFTLARRASP-----YSLE-GMDIYSTVLYHL 513 (760)
Q Consensus 444 ~~g~~~eAi~~l~~~~~~~p~~~----~~l~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~-~~~~la~~l~~l 513 (760)
...+.++|+.-|+++++..+..+ .++-.+..+++.+++|++.+..|.+++..-. +..+ ............
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 44578999999999988777543 3677788899999999999999998875321 1111 111111111122
Q ss_pred cCHHHHHHHHHHHHHh--CCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHhC----C--------CCHHHHHHHH
Q 004340 514 KEDMKLSYLAQELITT--DRLAPQSWC----AMGNCYSLQKDHETALKNFQRAVQLN----P--------RFAYGHTLCG 575 (760)
Q Consensus 514 ~~~~~a~~~~~~~l~~--~p~~~~~~~----~la~~~~~~g~~~~A~~~~~kal~~~----p--------~~~~a~~~la 575 (760)
.+..-...+++..++. +..+...|+ .+|.+|+..++|.+-.+.+++.-.-. . ...++|..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 2223333334333321 222333343 56677777666666655555544321 0 1123444445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--CHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 576 HEYVALEDFENGIRSYQSALRVDAR--HYNSW----YGLGMVYLRQEKFEFSEHHFRMAFQI 631 (760)
Q Consensus 576 ~~~~~~g~~e~A~~~~~~al~~~p~--~~~a~----~~la~~~~~~g~~~~A~~~l~~al~~ 631 (760)
..|-.+.+-.+-...|++++.+..- ++... -.=|..+++.|+|++|-.-|-+|++.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 5555566666666666666654321 11111 11133455556666666666555554
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.47 E-value=0.064 Score=40.49 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYS 507 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 507 (760)
+.++.+|..++++|+|++|..+.+.+++.+|++.++.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 46788999999999999999999999999999988765543
No 302
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.32 E-value=0.013 Score=40.32 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 707 YALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 707 ~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
+..||.+|...|++++|+.+|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 303
>PRK10941 hypothetical protein; Provisional
Probab=95.30 E-value=0.19 Score=52.08 Aligned_cols=77 Identities=19% Similarity=0.200 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIY 714 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~ 714 (760)
...++-.++.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+......+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 34566677778888888888888888888888877777888888888888888888888888887776655544443
No 304
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.19 E-value=0.064 Score=59.22 Aligned_cols=109 Identities=19% Similarity=0.106 Sum_probs=91.0
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 573 LCGHEY-VALEDFENGIRSYQSALRVDARH-YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (760)
Q Consensus 573 ~la~~~-~~~g~~e~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 650 (760)
++|-+| ...|+...|+.++..|+...|.. .....+||.++..-|....|-..+.+++.+....+..++.+|.++..+.
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 344444 45899999999999999888754 3457889999999999999999999999999888888899999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 004340 651 RSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (760)
Q Consensus 651 ~~~eAl~~l~~al~~~p~~~~~~~~la~~~~ 681 (760)
+.+.|++.|+.|++++|+++.+-..+-.+..
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999887766554443
No 305
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.00 E-value=0.78 Score=40.49 Aligned_cols=109 Identities=15% Similarity=0.012 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHhccccc---CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 004340 427 SDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHK---HY---------NTGWVLSQVGKAYFEVVDYLEAERAFTLARR 494 (760)
Q Consensus 427 ~~l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~---~p---------~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 494 (760)
.++-..+..|.+|...+..|-|++|..-+.++.+. -| -++.++..++.++..+|+|++++..-++++.
T Consensus 4 keVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 4 KEVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34556677788888888888888888888775331 11 1455677778888888888888777766654
Q ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004340 495 ASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSW----CAMGNCYSLQKDHETALKNFQRAVQ 562 (760)
Q Consensus 495 ~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~----~~la~~~~~~g~~~~A~~~~~kal~ 562 (760)
. +++--+++.+....| +..|..+...|+.++|++.|+.+-+
T Consensus 84 Y---------------------------FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 84 Y---------------------------FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp H---------------------------HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred H---------------------------HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2 222223333333333 4556667777777777777777654
No 306
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.95 E-value=0.21 Score=43.64 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=18.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 004340 541 GNCYSLQKDHETALKNFQRAVQLNPRFA 568 (760)
Q Consensus 541 a~~~~~~g~~~~A~~~~~kal~~~p~~~ 568 (760)
+.-++..|++-+|+++.+..+...++..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 4556666777777777777766655544
No 307
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.94 E-value=0.9 Score=45.87 Aligned_cols=187 Identities=11% Similarity=0.084 Sum_probs=112.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHHcC
Q 004340 547 QKDHETALKNFQRAVQLNPRFA----YGHTLCGHEYVALEDFENGIRSYQSALRVD-----ARHYN-SWYGLGMVYLRQE 616 (760)
Q Consensus 547 ~g~~~~A~~~~~kal~~~p~~~----~a~~~la~~~~~~g~~e~A~~~~~~al~~~-----p~~~~-a~~~la~~~~~~g 616 (760)
..+.++|+..|++++++.+... .++..+..+++.++++++-+..|.+.+..- .+..+ ....+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3478888888999888877654 345667788888888888888888876531 11111 1111111111222
Q ss_pred CHHHHHHHHHHHHHh--CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------hHHHHHHHH
Q 004340 617 KFEFSEHHFRMAFQI--SPHSSVIM----SYLGTAMHALKRSGEAIEMMEKAILADKKN------------PLPMYQKAN 678 (760)
Q Consensus 617 ~~~~A~~~l~~al~~--~p~~~~~~----~~la~~~~~~g~~~eAl~~l~~al~~~p~~------------~~~~~~la~ 678 (760)
+.+.-...|+..++. +..+..+| ..+|.+++..++|..-.+++.+.-+....+ .++|..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 333333344433321 12233333 458888888888887777776655432211 244555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCC--CHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 679 ILLSLEKFDEALEVLEELKEYAPR--ESGV----YALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 679 ~~~~~g~~~eA~~~l~~al~~~p~--~~~~----~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
+|..+++-.+-..+|++++.+..- .|.+ .-.=|..+.+.|++++|...|-+|+.-
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 777777777777888888876432 2322 222355677889999998888888764
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.87 E-value=0.16 Score=54.91 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=85.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004340 579 VALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEM 658 (760)
Q Consensus 579 ~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~ 658 (760)
...|+.-.|-.-...+++..|.++......+.+...+|+|+.|...+..+-.+-.....+...+-..+..+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 44677777777777777777777777777777777777777777776665555444444555556666777777777777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 659 MEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 659 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
.+-.+...-+++++..-.|.....+|-+++|..++++.+.+.|.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 77776666666666665666666677777777777777777664
No 309
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.82 E-value=0.038 Score=35.69 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCc
Q 004340 102 AGHYLMGLIYRYTDRRKNAIHHYKMALSIDPL 133 (760)
Q Consensus 102 ~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~ 133 (760)
.+++.+|.+|..+++.+.|+.+|.++++++|-
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 36889999999999999999999999999884
No 310
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.66 E-value=1.7 Score=47.36 Aligned_cols=126 Identities=8% Similarity=-0.014 Sum_probs=109.1
Q ss_pred HHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Q 004340 442 MSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSY 521 (760)
Q Consensus 442 ~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~ 521 (760)
.+..|+...|-.-+..++...|..|......+.+...+|+|+.|...+..+-..-..-..+...+...+..++++.+|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 35678888888888888889999999999999999999999999999988776655556677778888899999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 004340 522 LAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF 567 (760)
Q Consensus 522 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~ 567 (760)
...-++...-.+++....-+......|-+++|..++++.+.++|..
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 9999998888888888877778888899999999999999987753
No 311
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.64 E-value=0.35 Score=52.88 Aligned_cols=95 Identities=8% Similarity=-0.018 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 004340 551 ETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK-FEFSEHHFRMAF 629 (760)
Q Consensus 551 ~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~A~~~l~~al 629 (760)
..-...|++|+...+.+...|........+.+.+.+--..|.+++...|++++.|..-|.-.+..+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3456678888888887888888777777777778888888888888888888888877776555554 788888888888
Q ss_pred HhCCCCHHHHHHHHHH
Q 004340 630 QISPHSSVIMSYLGTA 645 (760)
Q Consensus 630 ~~~p~~~~~~~~la~~ 645 (760)
..+|+.+.+|...-.+
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 8888888877655443
No 312
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.60 E-value=11 Score=44.32 Aligned_cols=257 Identities=10% Similarity=-0.061 Sum_probs=126.2
Q ss_pred cCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc---cCHHHHHH
Q 004340 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL---KEDMKLSY 521 (760)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l---~~~~~a~~ 521 (760)
.+.-++-+..++.-...++.....+..+-.++...|++++-...-.++-++.|..+..|.....-...+ +...++..
T Consensus 92 ~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~ 171 (881)
T KOG0128|consen 92 EGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEE 171 (881)
T ss_pred cccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHH
Confidence 334444455555545555555556666667777777777777766677777777766666555433322 23444455
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHH
Q 004340 522 LAQELITTDRLAPQSWCAMGNCYSLQ-------KDHETALKNFQRAVQLNP-------RFAYGHTLCGHEYVALEDFENG 587 (760)
Q Consensus 522 ~~~~~l~~~p~~~~~~~~la~~~~~~-------g~~~~A~~~~~kal~~~p-------~~~~a~~~la~~~~~~g~~e~A 587 (760)
++++++. +-..+..|...+.+.... ++++.....|.+++..-. .....|..+-..|...-..++-
T Consensus 172 ~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv 250 (881)
T KOG0128|consen 172 LFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQV 250 (881)
T ss_pred HHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5555543 334455666666655432 345555566666655311 1123334444445544455555
Q ss_pred HHHHHHHHHhCCCC---HHHHHHHH--H-HHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCChHH
Q 004340 588 IRSYQSALRVDARH---YNSWYGLG--M-VYLRQEKFEFSEHHFRMA-------FQISPHSSVIMSYLGTAMHALKRSGE 654 (760)
Q Consensus 588 ~~~~~~al~~~p~~---~~a~~~la--~-~~~~~g~~~~A~~~l~~a-------l~~~p~~~~~~~~la~~~~~~g~~~e 654 (760)
+.++...+...-+. ...|.... . ......+++.|..-+.+. ++..+.-...|..+.......|..-.
T Consensus 251 ~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 251 IALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 66666655543111 01111111 1 111223344443332222 22222223334444555555566655
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCCC
Q 004340 655 AIEMMEKAILADKKNPLPMYQKANIL-LSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 655 Al~~l~~al~~~p~~~~~~~~la~~~-~~~g~~~eA~~~l~~al~~~p~ 702 (760)
-...+++++...+.+...|...+..+ ..++-.+.+...+-+++...|-
T Consensus 331 i~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~ 379 (881)
T KOG0128|consen 331 IQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW 379 (881)
T ss_pred HHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCch
Confidence 55666666655555555555444332 2233344445555555555543
No 313
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.60 E-value=1.9 Score=40.88 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccccCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Q 004340 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYN--TGWVLSQVGKAYFEVVDYLEAERAFTLARRASP 497 (760)
Q Consensus 436 l~~a~~~~~~g~~~eAi~~l~~~~~~~p~--~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p 497 (760)
|..+..+-..+..++|+..|..+.+.... ...+.+..|.+..+.|+-..|+..|..+-...|
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~ 125 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS 125 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC
Confidence 34556667788999999999998776654 345677788999999999999999998876544
No 314
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.57 E-value=0.12 Score=52.88 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIY 714 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~ 714 (760)
.-...|.-..+.|+.++|..+|+.|+.++|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.++..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 34455666678899999999999999999999999999999988888999999999999999999888887776643
No 315
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.49 E-value=8.2 Score=47.08 Aligned_cols=279 Identities=13% Similarity=0.019 Sum_probs=147.7
Q ss_pred CChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC-----HHHHH
Q 004340 446 YRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE-----DMKLS 520 (760)
Q Consensus 446 g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~-----~~~a~ 520 (760)
..+.+|+..|+++.. .+..|.-|...|.+|..+|+|++-++.|.-+++..|.+++.-...-.+.+++.+ ...+.
T Consensus 533 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 533 RDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889998887643 455667788899999999999999999999999999887654443333333321 11122
Q ss_pred HHHHHHHHhCCCCHHHH--------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 004340 521 YLAQELITTDRLAPQSW--------------------------------CAMGNCYSLQKDHETALKNFQRAVQLNPRFA 568 (760)
Q Consensus 521 ~~~~~~l~~~p~~~~~~--------------------------------~~la~~~~~~g~~~~A~~~~~kal~~~p~~~ 568 (760)
...--++..-|.....- +.+- +-+-.|..---.+.|+++....+-
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-- 688 (932)
T PRK13184 612 VFMLLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELF-LSFWSGFTPFLPELFQRAWDLRDY-- 688 (932)
T ss_pred HHHHHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHH-HHHHhcCchhhHHHHHHHhhcccH--
Confidence 22222222233221000 0000 011122223333455555554432
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004340 569 YGHTLCGHEYVALEDFENGIRSYQSALRV-----DARHY--------NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (760)
Q Consensus 569 ~a~~~la~~~~~~g~~e~A~~~~~~al~~-----~p~~~--------~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 635 (760)
.+....-.+...+|.++-+.+.....-+. .|.+. ..|..-..++.....++++.+.+.. .+|..
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 765 (932)
T PRK13184 689 RALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---TDPTL 765 (932)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---CCHHH
Confidence 45555555567788887666555443321 11111 1122222333444556666553332 22222
Q ss_pred HHHH-HHHHHHHHHcCChH---HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHH
Q 004340 636 SVIM-SYLGTAMHALKRSG---EAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE--YAPRESGVYAL 709 (760)
Q Consensus 636 ~~~~-~~la~~~~~~g~~~---eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~~~~ 709 (760)
.... ...+.-....++-+ .+++.+++...-............++|....++++|-+.+...-. ...+...++..
T Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (932)
T PRK13184 766 ILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVL 845 (932)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHH
Confidence 2111 11111111222222 222222222111111223444567788888999999888854321 22345678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 004340 710 MGKIYKRRNMHEKAMLHFGLAL 731 (760)
Q Consensus 710 la~~~~~~g~~~~A~~~~~~al 731 (760)
.|.-+...++-+-|..+|..+.
T Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 846 YGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHHhcCchhHHHHHHhhcc
Confidence 8888888999999999998877
No 316
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=2.9 Score=46.85 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=43.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHHH-----HHCCCCHHHHHHHHHHHHHc
Q 004340 645 AMHALKRSGEAIEMMEKAILADKK-NPLPMYQKANILL-SLEKFDEALEVLEELK-----EYAPRESGVYALMGKIYKRR 717 (760)
Q Consensus 645 ~~~~~g~~~eAl~~l~~al~~~p~-~~~~~~~la~~~~-~~g~~~eA~~~l~~al-----~~~p~~~~~~~~la~~~~~~ 717 (760)
.+.+.|-+..|.++++-.+.++|. +|.+...+..+|. +..+|+--++.++..- ..-|+ ...-..+|..|...
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRK 429 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhc
Confidence 344556666666666666666665 5544444333332 3344444444444331 12232 22223344444444
Q ss_pred CC---HHHHHHHHHHHHhcCCC
Q 004340 718 NM---HEKAMLHFGLALDLKPS 736 (760)
Q Consensus 718 g~---~~~A~~~~~~al~l~p~ 736 (760)
.. .+.|...+.+|+.+.|.
T Consensus 430 ~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 430 NEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred CChhhHHHHHHHHHHHHHhCcH
Confidence 33 44566666666666653
No 317
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.44 E-value=6.3 Score=41.15 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcCCChHHH
Q 004340 721 EKAMLHFGLALDLKPSATDV 740 (760)
Q Consensus 721 ~~A~~~~~~al~l~p~~~~a 740 (760)
..|++...++++.+|.-+..
T Consensus 379 ~~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHH
Confidence 35888889999999887754
No 318
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.42 E-value=1.4 Score=38.97 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=47.6
Q ss_pred HcCChHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HCCCCH----
Q 004340 648 ALKRSGEAIEMMEKAILADKK------------NPLPMYQKANILLSLEKFDEALEVLEELKE-------YAPRES---- 704 (760)
Q Consensus 648 ~~g~~~eAl~~l~~al~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~l~~al~-------~~p~~~---- 704 (760)
..|-|++|...+.++++.... +..++-.++.++..+|+|++++...++++. ++.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 345555555555555554211 123455566666666666666555555543 334433
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 705 GVYALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 705 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
.+.+..+..+..+|+.++|+..|+.+-+
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3345667777788888888888877654
No 319
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.38 E-value=0.3 Score=41.51 Aligned_cols=44 Identities=30% Similarity=0.370 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 004340 658 MMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (760)
Q Consensus 658 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 701 (760)
.+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 34444444555555555555555555555555555544444443
No 320
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=7.3 Score=39.94 Aligned_cols=266 Identities=14% Similarity=0.069 Sum_probs=143.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccccCC--------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---C--CCCHHH
Q 004340 436 LGEGYRMSCMYRCKDALDVYLKLPHKHY--------NTGWVLSQVGKAYFEVVDYLEAERAFTLARRA---S--PYSLEG 502 (760)
Q Consensus 436 l~~a~~~~~~g~~~eAi~~l~~~~~~~p--------~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~---~--p~~~~~ 502 (760)
+..|..+....++++|+..|.+++...- ....+...++.+|...|++..--+......+. . |.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 3456667788899999999999876532 23346788999999999886544433322211 0 000011
Q ss_pred HHHHHHHHH-HccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHH
Q 004340 503 MDIYSTVLY-HLKEDMKLSYLAQELITTDRLA------PQSWCAMGNCYSLQKDHETALKNFQRAVQL------NPRFAY 569 (760)
Q Consensus 503 ~~~la~~l~-~l~~~~~a~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~kal~~------~p~~~~ 569 (760)
...+..-.- .....+..+..+...++..... -..-+.+..+++..|+|.+|+......+.. .+....
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 111100000 0111223333333333221111 123356778889999999999887766542 234456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHH
Q 004340 570 GHTLCGHEYVALEDFENGIRSYQSALRV-----DARHYNSW--YGLGMVYLRQEKFEFSEHHFRMAFQISP---HSSVIM 639 (760)
Q Consensus 570 a~~~la~~~~~~g~~e~A~~~~~~al~~-----~p~~~~a~--~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~~~ 639 (760)
++..-..+|....+..++...+..|-.. .|....+. ..-|...+...+|.-|-.+|-++++-.. .+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 6777788888888888877776655432 22222222 2235556667788899999888876532 223322
Q ss_pred H---HHHHHHHHcCChHHHHHHHH--HHHH-hCCCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCC
Q 004340 640 S---YLGTAMHALKRSGEAIEMME--KAIL-ADKKNPLPMYQKANILL--SLEKFDEALEVLEELKEYAP 701 (760)
Q Consensus 640 ~---~la~~~~~~g~~~eAl~~l~--~al~-~~p~~~~~~~~la~~~~--~~g~~~eA~~~l~~al~~~p 701 (760)
. .+-..-...++.++....+. .+++ .+.....+....+.++. .+.+|..|+..|..-+..+|
T Consensus 247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 2 12222223344444333332 2222 22333455555565553 34577888887776555443
No 321
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.23 E-value=0.12 Score=52.85 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004340 429 LLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYST 508 (760)
Q Consensus 429 l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 508 (760)
+.+.+..+..|......|+.++|..+|+.++...|.++.++...|.......+.-+|-.+|-+++.+.|.+.+++...+.
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 44566677788888899999999999999999999999999999999999999999999999999999999888776654
No 322
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.22 E-value=0.42 Score=41.84 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 688 EALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 688 eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
.+++.+.++..+.|..+..++.+|.-+.....|+++....++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3566777777777777777777777666666666776666666653
No 323
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.08 E-value=0.62 Score=46.68 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004340 637 VIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (760)
Q Consensus 637 ~~~~~la~~~~~~g~~~eAl~~l~~al~~~ 666 (760)
.+.+.+|.+..+.|++++|+++|.+++...
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 355566666666666666666666666543
No 324
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=2 Score=48.29 Aligned_cols=132 Identities=15% Similarity=0.045 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 548 KDHETALKNFQRAVQLNPRFAYGHTL--CGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHF 625 (760)
Q Consensus 548 g~~~~A~~~~~kal~~~p~~~~a~~~--la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l 625 (760)
+...-++..+...+.+++.++..... +...+...++...+.-.+..++..+|....++..++......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33334555666556666666655332 4566666777777888888888888888888888887777666665555555
Q ss_pred HH-HHHhCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 004340 626 RM-AFQISPHSSVIMSYL------GTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI 679 (760)
Q Consensus 626 ~~-al~~~p~~~~~~~~l------a~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~ 679 (760)
.. +....|.+......+ +..+..+|+..++...++++....|.++.+...+...
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 44 677777777665554 7777777778888888888888888776655554444
No 325
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.07 E-value=0.7 Score=50.66 Aligned_cols=95 Identities=8% Similarity=0.090 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 004340 585 ENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR-SGEAIEMMEKAI 663 (760)
Q Consensus 585 e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~-~~eAl~~l~~al 663 (760)
..-...|+.+....+.+...|........+.+.+.+--..|.+++..+|+++.+|...|.-.+..+. .+.|..+|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 4567889999999999999999998888888889999999999999999999999999998888886 999999999999
Q ss_pred HhCCCChHHHHHHHHH
Q 004340 664 LADKKNPLPMYQKANI 679 (760)
Q Consensus 664 ~~~p~~~~~~~~la~~ 679 (760)
+.+|+.+..|...-++
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 9999999887654443
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.06 E-value=0.34 Score=48.51 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCHHH-------HHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 671 LPMYQKANILLSLEKFDE-------ALEVLEELKEYAP------RESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 671 ~~~~~la~~~~~~g~~~e-------A~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
..+..+||+|...|+.+. |++.|+++++... +...+.+.+|.++.+.|++++|..+|.+++......
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 455667777777776443 4444444444322 235788899999999999999999999998854443
Q ss_pred H
Q 004340 738 T 738 (760)
Q Consensus 738 ~ 738 (760)
.
T Consensus 199 ~ 199 (214)
T PF09986_consen 199 K 199 (214)
T ss_pred C
Confidence 3
No 327
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.01 E-value=0.082 Score=33.99 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 706 VYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 706 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
+++.+|.++...|++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566666666666666666666666666654
No 328
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=1.6 Score=48.89 Aligned_cols=131 Identities=13% Similarity=0.058 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004340 583 DFENGIRSYQSALRVDARHYNSWYG--LGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMME 660 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~~~~a~~~--la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~ 660 (760)
.-.-++..+...+.+++.+...+.. +...+...++...+...+..++..+|.+..++.+++.++...|....+...+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333666666666677776665333 46666677777777888888888888888888888888777776555554444
Q ss_pred H-HHHhCCCChHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 004340 661 K-AILADKKNPLPMYQK------ANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKI 713 (760)
Q Consensus 661 ~-al~~~p~~~~~~~~l------a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~ 713 (760)
. +....|.+......+ +.....+|+..++...++++.++.|..+.+...+...
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 4 777777776655444 7777777788888888888888888776655555544
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.97 E-value=0.63 Score=43.02 Aligned_cols=72 Identities=13% Similarity=0.023 Sum_probs=38.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK 685 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~ 685 (760)
..++.+++...+...--+.|+.+.+-..-|.++...|+|.+|+.+|+...+..+..+...-.++.|+..+|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 355555555555555555555555555555555555555555555555555554445555555555555554
No 330
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.81 E-value=5.5 Score=48.54 Aligned_cols=102 Identities=15% Similarity=0.033 Sum_probs=56.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHcc----C---HHHHHHHHHHHHHhCCCCHHHHHH
Q 004340 470 SQVGKAYFEVVDYLEAERAFTLARRASPYSLEG---MDIYSTVLYHLK----E---DMKLSYLAQELITTDRLAPQSWCA 539 (760)
Q Consensus 470 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~l~~l~----~---~~~a~~~~~~~l~~~p~~~~~~~~ 539 (760)
.....++...+.|+.|+..|+++..-.|.+.+. .+..|..+.... + +.+|..-++++ ...|..|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHh
Confidence 345566777777888888888888877776543 333333333221 1 22222222222 123444555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004340 540 MGNCYSLQKDHETALKNFQRAVQLNPRFAYGHT 572 (760)
Q Consensus 540 la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~ 572 (760)
.|.+|.+.|++++-+++|.-|++..|..+..-.
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 666666666666666666666666666554433
No 331
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.78 E-value=9.5 Score=39.48 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNF 557 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~ 557 (760)
+++.+..+|..|+..|++.+|..+|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4566666666666666665555554
No 332
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.74 E-value=0.63 Score=39.57 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=11.9
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAF 629 (760)
Q Consensus 596 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al 629 (760)
+.+|++..+.+.+|..+...|++++|++.+-.++
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 333
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.51 E-value=3.4 Score=46.68 Aligned_cols=176 Identities=12% Similarity=0.023 Sum_probs=82.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHH------HHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 004340 471 QVGKAYFEVVDYLEAERAFTLA------RRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITT--DRLAPQSWCAMGN 542 (760)
Q Consensus 471 ~la~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~--~p~~~~~~~~la~ 542 (760)
.+|..+...|+|.+|.++|.+. +++..+ --++-++.-+...|..++-..+..+-.+- +-+.| ..-|.
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAE 711 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAE 711 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHH
Confidence 5788888899999999998753 222111 11222232233333333222222221110 11111 12345
Q ss_pred HHHhcCCHHHHHHHHH----------HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 543 CYSLQKDHETALKNFQ----------RAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (760)
Q Consensus 543 ~~~~~g~~~~A~~~~~----------kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~ 612 (760)
++...|+.++|+...- -+-+++....+.+..++..+.....+.-|.+.|.+.=. ...+...+
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlH 783 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLH 783 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhhe
Confidence 5566666666665321 11222333334444444444455555555555544311 12334445
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004340 613 LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKA 662 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~a 662 (760)
...++|.+|....++.-+.- +.+++..|..+.+..++++|.+.|.+|
T Consensus 784 ve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred eecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 55666666655544432222 234555566666666666666555443
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.48 E-value=6.1 Score=37.62 Aligned_cols=24 Identities=4% Similarity=0.039 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 572 TLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 572 ~~la~~~~~~g~~e~A~~~~~~al 595 (760)
...|.+....|+...|+..|..+-
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHh
Confidence 334444444444444444444443
No 335
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.39 E-value=0.15 Score=50.12 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=39.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004340 680 LLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 680 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
..+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|.+.-
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 445566666666666666666666666666666666666666666666666666666543
No 336
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.36 E-value=0.76 Score=56.06 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=124.6
Q ss_pred HHHHHHHHHHcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Q 004340 571 HTLCGHEYVALEDFENGIR------SYQSA-LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI--------SPHS 635 (760)
Q Consensus 571 ~~~la~~~~~~g~~e~A~~------~~~~a-l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~ 635 (760)
....|......|.+.+|.+ .+... -.+.|.....+..++.++...+++++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3456666777788887777 44422 2345667788999999999999999999998877644 3445
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC------
Q 004340 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILA--------DKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP------ 701 (760)
Q Consensus 636 ~~~~~~la~~~~~~g~~~eAl~~l~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p------ 701 (760)
...+.+++...+..+....|+..+.++..+ .|.-.....+++.++...++++.|+++++.|.....
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 667888888889999999999999988875 244445567788888899999999999999988532
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 702 --RESGVYALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 702 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
.....+..+++.+..++++..|..+.+..+.
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 2356678888888889998888887776654
No 337
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.34 E-value=0.7 Score=56.38 Aligned_cols=163 Identities=16% Similarity=0.151 Sum_probs=125.3
Q ss_pred HHHHHHHHHhcCCHHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Q 004340 537 WCAMGNCYSLQKDHETALK------NFQ-RAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV--------DARH 601 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~------~~~-kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~--------~p~~ 601 (760)
....|......|.+.+|.+ ++. ..-.+.|+....|..++.++...+++++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4455666667778887777 554 233357888899999999999999999999998887643 2345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI--------SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK----- 668 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~----- 668 (760)
...+..++...+..++...|...+.++... .|.-.....+++.++...++++.|+++++.|+.....
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 667888888888888999999998888765 4555666788899999999999999999999986422
Q ss_pred ---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004340 669 ---NPLPMYQKANILLSLEKFDEALEVLEELKEY 699 (760)
Q Consensus 669 ---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 699 (760)
....+..+++++...+++..|+...+....+
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 2455667788888888888877777666554
No 338
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.24 E-value=0.97 Score=43.85 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH----HHH
Q 004340 570 GHTLCGHEYVALEDFENGIRSYQSALRVDAR---HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP--HSSV----IMS 640 (760)
Q Consensus 570 a~~~la~~~~~~g~~e~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~----~~~ 640 (760)
++..+|..|...|+.++|++.|.++...... ..+.++.+..+.+..+++..+..++.++-..-. .+.. +..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4445555555555555555555555443221 133455555555556666666666555543321 1111 223
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 004340 641 YLGTAMHALKRSGEAIEMMEKAI 663 (760)
Q Consensus 641 ~la~~~~~~g~~~eAl~~l~~al 663 (760)
.-|..+...++|.+|.+.|-.+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 34555555566666666655543
No 339
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=6.1 Score=44.36 Aligned_cols=92 Identities=12% Similarity=0.059 Sum_probs=47.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCChHHHHHHHHHHHH-----hCCCChHHHHHHHHHHH
Q 004340 609 GMVYLRQEKFEFSEHHFRMAFQISPH-SSVIMSYLGTAM-HALKRSGEAIEMMEKAIL-----ADKKNPLPMYQKANILL 681 (760)
Q Consensus 609 a~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~~la~~~-~~~g~~~eAl~~l~~al~-----~~p~~~~~~~~la~~~~ 681 (760)
...+.+.|-+.-|.++++-.++++|. ++.....+..+| .+..+|+--++.++..-. .-|+.+ .-..+|..|.
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l 427 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFL 427 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHH
Confidence 34445566677777777777777766 555444444433 334455555555554422 223222 1223444444
Q ss_pred HcCC---HHHHHHHHHHHHHHCC
Q 004340 682 SLEK---FDEALEVLEELKEYAP 701 (760)
Q Consensus 682 ~~g~---~~eA~~~l~~al~~~p 701 (760)
.... -+.|...+.+|+...|
T Consensus 428 ~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hcCChhhHHHHHHHHHHHHHhCc
Confidence 4433 3456666666666555
No 340
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.99 E-value=1.7 Score=39.50 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 004340 636 SVIMSYLGTAMHALK---RSGEAIEMMEKAIL-ADKK-NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALM 710 (760)
Q Consensus 636 ~~~~~~la~~~~~~g---~~~eAl~~l~~al~-~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 710 (760)
....+++++++.+.. +..+.+.+++..++ -.|. .-+..+.+|..++++++|++++.+.+.+++..|++.++....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 445667777776654 34567777777775 3333 245677788888888888888888888888888777665544
Q ss_pred HHHH
Q 004340 711 GKIY 714 (760)
Q Consensus 711 a~~~ 714 (760)
-.+.
T Consensus 112 ~~ie 115 (149)
T KOG3364|consen 112 ETIE 115 (149)
T ss_pred HHHH
Confidence 4443
No 341
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=16 Score=39.43 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 538 CAMGNCYSLQKDHETALKNFQRAVQL--NP--RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600 (760)
Q Consensus 538 ~~la~~~~~~g~~~~A~~~~~kal~~--~p--~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~ 600 (760)
..+-..|...+.|+.|-+...+..-- .. ..+...+.+|.+..-+++|..|.+++-+|+...|.
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 34444555555566555555544311 01 11223344555555555555555555555555554
No 342
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=15 Score=38.76 Aligned_cols=266 Identities=14% Similarity=0.079 Sum_probs=157.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhccccc--CCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCCHH-
Q 004340 436 LGEGYRMSCMYRCKDALDVYLKLPHK--HYN--------TGWVLSQVGKAYFEVVDYLEAERAFTLARRA---SPYSLE- 501 (760)
Q Consensus 436 l~~a~~~~~~g~~~eAi~~l~~~~~~--~p~--------~~~~l~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~- 501 (760)
+..+.......++++++.+|..+... .+. .......+|..|.+.|++.+-.......... -+....
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 55666777778889999999988763 121 2346788999999999988766665554332 111111
Q ss_pred -HHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CC--CC
Q 004340 502 -GMDIYSTVL-YHLKEDMKLSYLAQELITTDRLAP------QSWCAMGNCYSLQKDHETALKNFQRAVQL----NP--RF 567 (760)
Q Consensus 502 -~~~~la~~l-~~l~~~~~a~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~kal~~----~p--~~ 567 (760)
....+.... ..-+....-+.++.++++.....- ..-..+..+|...++|.+|+......+.. +. .-
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 111111111 111122333344444443322111 22345778889999999999877766542 22 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHH
Q 004340 568 AYGHTLCGHEYVALEDFENGIRSYQSALRV-----DARHYN--SWYGLGMVYLRQEKFEFSEHHFRMAFQISP---HSSV 637 (760)
Q Consensus 568 ~~a~~~la~~~~~~g~~e~A~~~~~~al~~-----~p~~~~--a~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~ 637 (760)
.+++..-..+|....+..+|...+..|-.. .|.... .=..-|.++....+|.-|..||-++++-.. ++..
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 456666777888888888888877766542 121111 122335566666889999999988887532 1222
Q ss_pred ---HHHHHHHHHHHcCChHHHHHHH--HHHHHhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCC
Q 004340 638 ---IMSYLGTAMHALKRSGEAIEMM--EKAILADKKNPLPMYQKANILLS--LEKFDEALEVLEELKEYAP 701 (760)
Q Consensus 638 ---~~~~la~~~~~~g~~~eAl~~l--~~al~~~p~~~~~~~~la~~~~~--~g~~~eA~~~l~~al~~~p 701 (760)
.+-.+-.+-...+..++--.++ +.+++....+..+....|.++.+ +.+|+.|+..|..-+..+|
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 3344445555667666544444 45566666667777777777754 3578888888887666544
No 343
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.68 E-value=0.33 Score=53.20 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=73.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004340 541 GNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA---LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK 617 (760)
Q Consensus 541 a~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~---~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 617 (760)
|+-.+..+....|+..|.++++..|.....+.+.+.++++ .|+.-.|+.-...+++++|....+|+.|+.++..+++
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence 3333444556778888888888888888888888777776 4566777888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCH
Q 004340 618 FEFSEHHFRMAFQISPHSS 636 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~~ 636 (760)
+.+|+.+...+....|.+.
T Consensus 461 ~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 461 YLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHhhhhHHHHhhcCchhh
Confidence 8888888777776677543
No 344
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.35 E-value=1.7 Score=42.08 Aligned_cols=96 Identities=14% Similarity=-0.017 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--Ch----HH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADKK--NP----LP 672 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~--~~----~~ 672 (760)
..++..+|..|.+.|++++|++.|.++.+..... ..++..+..+.+..+++..+..++.++-..... +. ..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3466777788888888888888887776654332 345566677777777777777777776554322 11 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 673 MYQKANILLSLEKFDEALEVLEELK 697 (760)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~l~~al 697 (760)
....|..+...++|.+|.+.|-.+.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 2234444555566666665555443
No 345
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=92.18 E-value=15 Score=38.61 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 550 HETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAF 629 (760)
Q Consensus 550 ~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al 629 (760)
-++|+.+-.-...+-|..++++-.++...+...+...=...=-..+-+...+...| ..+-.+++...+.++.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW--------~r~lI~eg~all~rA~ 283 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLW--------DRALIDEGLALLDRAL 283 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhh--------hHHHHHHHHHHHHHHH
Confidence 48888888888888998898888777766543222110000000011112222222 2234566777777777
Q ss_pred HhC-CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CC
Q 004340 630 QIS-PHSSVIMSYLGTAMHAL-----KRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEY--AP 701 (760)
Q Consensus 630 ~~~-p~~~~~~~~la~~~~~~-----g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p 701 (760)
... |.-..+.-.++.++... -+|..-..+|+-.....| +|.+-.+.+.+..+..-.+.++...+.+... -.
T Consensus 284 ~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~ 362 (415)
T COG4941 284 ASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLD 362 (415)
T ss_pred HcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccc
Confidence 654 33233333333343332 256666666666666665 5666777777777777778888888776654 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 004340 702 RESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEKLH 751 (760)
Q Consensus 702 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l~ 751 (760)
.....+-..|.++.++|+.++|...|++++.+.++..+...++..+..+.
T Consensus 363 gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~~l~ 412 (415)
T COG4941 363 GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLDRLA 412 (415)
T ss_pred cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHhh
Confidence 34556778899999999999999999999999999988877777665543
No 346
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.16 E-value=0.41 Score=52.58 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL---KRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~eAl~~l~~al~~~p~~~~~~~~la~ 678 (760)
.+-+..-|.-.+..+.+..|+..|.++++..|.....+.+.+.++++. |+.-.|+.-...+++++|....+++.++.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 444444454445556678899999999999999999999999888876 46677888888999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCC
Q 004340 679 ILLSLEKFDEALEVLEELKEYAPRE 703 (760)
Q Consensus 679 ~~~~~g~~~eA~~~l~~al~~~p~~ 703 (760)
++..++++.+|++....+....|.+
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9999999999999988887777743
No 347
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=18 Score=38.19 Aligned_cols=268 Identities=12% Similarity=0.037 Sum_probs=165.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC--CH
Q 004340 470 SQVGKAYFEVVDYLEAERAFTLARRA--SPYS--------LEGMDIYSTVLYHLKEDMKLSYLAQELITTD---RL--AP 534 (760)
Q Consensus 470 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~---p~--~~ 534 (760)
...+.......++++++..|..++.. .|.. ......++..+...|+..+...+....-..- +. .+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 45666677778889999999999884 1221 2456678888888888877766655443211 11 11
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CC
Q 004340 535 QSWCAMGNCYSL-QKDHETALKNFQRAVQLNPRFA------YGHTLCGHEYVALEDFENGIRSYQSALRV----DA--RH 601 (760)
Q Consensus 535 ~~~~~la~~~~~-~g~~~~A~~~~~kal~~~p~~~------~a~~~la~~~~~~g~~e~A~~~~~~al~~----~p--~~ 601 (760)
.....+-..+.. .+..+.-+..+...++.....- ..-..+..+|...++|.+|+......++. +. .-
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 112222222221 2333444555555554422211 12245788899999999999988777653 22 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CChH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI-----SPHSSV--IMSYLGTAMHALKRSGEAIEMMEKAILADK---KNPL 671 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~~~--~~~~la~~~~~~g~~~eAl~~l~~al~~~p---~~~~ 671 (760)
.+++..-..+|....+..+|...+..|-.. .|.... +-..-|.++....+|.-|..+|-+|++-.. ++..
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 456666778888888888888888766543 222111 223336666667899999999999987532 2223
Q ss_pred H---HHHHHHHHHHcCCHHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCh
Q 004340 672 P---MYQKANILLSLEKFDEALEVL--EELKEYAPRESGVYALMGKIYKR--RNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 672 ~---~~~la~~~~~~g~~~eA~~~l--~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~l~p~~ 737 (760)
+ +-.+-.+-..++..++--.++ +.+++....+..+....+.++.. +.+|+.|+..|..-+..+|--
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~iv 320 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIV 320 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHH
Confidence 3 333444445566666554444 45566666678888888888864 468999999999888877653
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.63 E-value=6.1 Score=44.23 Aligned_cols=130 Identities=16% Similarity=0.109 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE 616 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 616 (760)
...++..+..+|.++.|+.+.. ++...+.| ..+.|+.+.|.+..++ .++...|..||...+.+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeL---Al~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT--------DPDHRFEL---ALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS---------HHHHHHH---HHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHH---HHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcC
Confidence 4445555555555555554421 22333322 3455666555544322 224556666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 617 KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEE 695 (760)
Q Consensus 617 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 695 (760)
+++-|+++|+++-. +..+..+|.-.|+.+.-.++...+..... +...-.+++.+|+.++.++.|.+
T Consensus 362 ~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 362 NIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666655321 22344455555555444444433333221 11122334445555555555543
No 349
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=5.1 Score=43.27 Aligned_cols=128 Identities=15% Similarity=0.204 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHH
Q 004340 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK--FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK----RSGEAI 656 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g----~~~eAl 656 (760)
-+++-+.+...+++.+|+.+.+|+....++.+.+. +..-++..+++++.+|.+..+|...=.+..... ...+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 45667788888899999999999999998887654 577788899999999998877765544443332 356678
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHHCCCCHHHHHHH
Q 004340 657 EMMEKAILADKKNPLPMYQKANILLS------LEK------FDEALEVLEELKEYAPRESGVYALM 710 (760)
Q Consensus 657 ~~l~~al~~~p~~~~~~~~la~~~~~------~g~------~~eA~~~l~~al~~~p~~~~~~~~l 710 (760)
++..+++..++.+..+|.+...++.. .|+ ...-++.-..++-.+|++..+|+..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 88889998888888888887777652 231 1233444455566688888877663
No 350
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=11 Score=44.17 Aligned_cols=240 Identities=11% Similarity=0.056 Sum_probs=133.9
Q ss_pred HhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHccCHHHHHH
Q 004340 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA-SPYSLEGMDIYSTVLYHLKEDMKLSY 521 (760)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~l~~~~~a~~ 521 (760)
.+..-|.-|+.+.+.--........+....|.-++..|++++|...|-+.+.. +|.. .. .-+....+..+...
T Consensus 345 ~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~--Vi----~kfLdaq~IknLt~ 418 (933)
T KOG2114|consen 345 FKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE--VI----KKFLDAQRIKNLTS 418 (933)
T ss_pred HHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH--HH----HHhcCHHHHHHHHH
Confidence 44556788888777644333345667888899999999999999999998864 3321 11 11123334555666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004340 522 LAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGH---TLCGHEYVALEDFENGIRSYQSALRVD 598 (760)
Q Consensus 522 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~---~~la~~~~~~g~~e~A~~~~~~al~~~ 598 (760)
+++.+.+..-.+.+--..|-.+|.+.++.++-.++..+. +. .... -..-.++.+.+-+++|.-...+.-.
T Consensus 419 YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~----~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-- 491 (933)
T KOG2114|consen 419 YLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKC----DK-GEWFFDVETALEILRKSNYLDEAELLATKFKK-- 491 (933)
T ss_pred HHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcC----CC-cceeeeHHHHHHHHHHhChHHHHHHHHHHhcc--
Confidence 777777766666666677788899998887765554432 21 1110 0111222333333444333322211
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHH--
Q 004340 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS-SVIMSYLGTAMHALKRSGEAIEMMEKAILADK--KNPLPM-- 673 (760)
Q Consensus 599 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p--~~~~~~-- 673 (760)
+. ..+-.++...++|++|+.++... .|.. .......|..+... .+++-...+-+.+...- ......
T Consensus 492 --he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~~~~s~ 562 (933)
T KOG2114|consen 492 --HE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKGKSLSN 562 (933)
T ss_pred --CH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCCchhhc
Confidence 11 12345567789999999998763 2222 23455566666543 34444555444443221 111000
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 004340 674 --YQKANILLSLEKFDEALEVLEELKEYAPRES 704 (760)
Q Consensus 674 --~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 704 (760)
...-.+..-.+++..-...++...+..|+.+
T Consensus 563 ~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~ 595 (933)
T KOG2114|consen 563 IPDSIEFIGIFSQNYQILLNFLESMSEISPDSE 595 (933)
T ss_pred CccchhheeeeccCHHHHHHHHHHHHhcCCCch
Confidence 1122333445677777777777777776544
No 351
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.31 E-value=11 Score=40.72 Aligned_cols=166 Identities=9% Similarity=0.024 Sum_probs=90.6
Q ss_pred ccCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 479 VVDY-LEAERAFTLARRASPYSLEGMDIYSTVLYHLK------------EDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (760)
Q Consensus 479 ~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~------------~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~ 545 (760)
.|.| .++++.-.+.+..+|.....|...-.++.... -.++-..+...++..+|+.-.+|+.+..++.
T Consensus 41 ~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~ 120 (421)
T KOG0529|consen 41 AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQ 120 (421)
T ss_pred ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3444 46777778888888876655544333322211 1223334555666667776677777666666
Q ss_pred hcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----
Q 004340 546 LQK--DHETALKNFQRAVQLNPRFAYGHTLCGHEYVA----LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR----- 614 (760)
Q Consensus 546 ~~g--~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~----~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~----- 614 (760)
..+ ++..=+++.+++++.+|.+..+|...=.+... .....+-+++..+++..++.++.+|.....++..
T Consensus 121 ~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~ 200 (421)
T KOG0529|consen 121 KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKE 200 (421)
T ss_pred hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc
Confidence 554 34566666677777776666555443222222 2224455666666666666666666666555441
Q ss_pred -cCC------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 615 -QEK------FEFSEHHFRMAFQISPHSSVIMSYLGT 644 (760)
Q Consensus 615 -~g~------~~~A~~~l~~al~~~p~~~~~~~~la~ 644 (760)
.|. ...-++....|+-.+|++..+|+..-.
T Consensus 201 ~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rW 237 (421)
T KOG0529|consen 201 ADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRW 237 (421)
T ss_pred ccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHH
Confidence 121 122233344455556666666655333
No 352
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.28 E-value=0.97 Score=46.22 Aligned_cols=77 Identities=21% Similarity=0.227 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 004340 675 QKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEKLH 751 (760)
Q Consensus 675 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l~ 751 (760)
++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|++.++..++..|+++.+..++..+..+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~l~ 262 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLELR 262 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 34455667778888888888888888888877778888888888888888888888888888887777777666554
No 353
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.08 E-value=9.4 Score=39.19 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEEL 696 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~a 696 (760)
+...+|..|+..|++++|+++|+.+....... ..+...+..|+...|+.+..+.+.-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44566777777777777777777775443222 244556777777777777766655443
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.05 E-value=14 Score=41.44 Aligned_cols=47 Identities=6% Similarity=-0.238 Sum_probs=24.0
Q ss_pred HHHhcCChHHHHHHHh--cccccCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 004340 441 RMSCMYRCKDALDVYL--KLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAF 489 (760)
Q Consensus 441 ~~~~~g~~~eAi~~l~--~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~ 489 (760)
..+-.++++++..... ++++.-| ..-...++..+.++|-.+.|+++-
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV 318 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc
Confidence 3456788888776665 3343333 234556677777788777777664
No 355
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.00 E-value=2 Score=48.45 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 570 GHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLG 643 (760)
Q Consensus 570 a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 643 (760)
.+.+-|.-.++..+|..++++|...+..-|.+ ......++.||..+.+.+.|.+++++|-+.+|.++.....+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34556777788888999999988888865544 345677888888888889999999888888888888777777
Q ss_pred HHHHHcCChHHHHHHHHHHHHhC
Q 004340 644 TAMHALKRSGEAIEMMEKAILAD 666 (760)
Q Consensus 644 ~~~~~~g~~~eAl~~l~~al~~~ 666 (760)
.+....|.-++|+..........
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 77778888888888887776543
No 356
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.96 E-value=1.7 Score=48.98 Aligned_cols=97 Identities=20% Similarity=0.273 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 004340 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (760)
Q Consensus 604 a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la 677 (760)
.+.+-|.-.++..+|..+++.|...+...|.+ ......++.+|..+.+.+.|.+++++|-+.+|..+...+.+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34445566677788888888888887776655 234566777888888888888888888888888887777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Q 004340 678 NILLSLEKFDEALEVLEELKEYA 700 (760)
Q Consensus 678 ~~~~~~g~~~eA~~~l~~al~~~ 700 (760)
.+....|.-++|+..+.+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 77777888888888777766543
No 357
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=14 Score=39.88 Aligned_cols=100 Identities=12% Similarity=0.098 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC--CCHHH
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQL-----NPR-FAYGHTLCGHEYVALEDFENGIRSYQSALRV--DA--RHYNS 604 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~-----~p~-~~~a~~~la~~~~~~g~~e~A~~~~~~al~~--~p--~~~~a 604 (760)
..|+.+...|...|+...-...+...+.. +.. .+.....+-..|...+.|+.|.....+..-- .. ..+..
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY 249 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY 249 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence 34555555555555544444433333321 111 1122333445555555555555555443311 00 11233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (760)
Q Consensus 605 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 634 (760)
++.+|.+..-+++|..|.++|-+|+...|.
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 455555555556666666666666655554
No 358
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.64 E-value=0.31 Score=48.02 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=40.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004340 612 YLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (760)
Q Consensus 612 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~ 670 (760)
....++.+.|.+.|.+++...|....-|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556667777777777777777777777777777777777777777777777776653
No 359
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=24 Score=36.40 Aligned_cols=267 Identities=9% Similarity=-0.042 Sum_probs=152.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hC--CCCHHH
Q 004340 470 SQVGKAYFEVVDYLEAERAFTLARRASP--------YSLEGMDIYSTVLYHLKEDMKLSYLAQELIT---TD--RLAPQS 536 (760)
Q Consensus 470 ~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~---~~--p~~~~~ 536 (760)
..+|+-....+++++|+..|.+++...- ........++.+|...|++..........-+ .. |.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4677888899999999999999987621 1234566778888888876655443332211 11 111222
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 004340 537 WCAMGNCY-SLQKDHETALKNFQRAVQLNPRFA------YGHTLCGHEYVALEDFENGIRSYQSALRV------DARHYN 603 (760)
Q Consensus 537 ~~~la~~~-~~~g~~~~A~~~~~kal~~~p~~~------~a~~~la~~~~~~g~~e~A~~~~~~al~~------~p~~~~ 603 (760)
...+...+ .....++.-++.+...++...... ..-..++.+++..|.|.+|+......+.. .+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22222211 123345555555555555422211 12234677889999999999988776643 233355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHhCC---CChHHH
Q 004340 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQI-----SPHSSVI--MSYLGTAMHALKRSGEAIEMMEKAILADK---KNPLPM 673 (760)
Q Consensus 604 a~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~--~~~la~~~~~~g~~~eAl~~l~~al~~~p---~~~~~~ 673 (760)
.+..-..+|....+..++...+..|-.. +|....+ -..-|.....-.+|.-|-.+|-++++-.. .+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 6777778888888888877777655433 3332222 22235556677789999999999987532 233332
Q ss_pred HHHH---HHHHHcCCHHHHHHHHH--HHHH-HCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCC
Q 004340 674 YQKA---NILLSLEKFDEALEVLE--ELKE-YAPRESGVYALMGKIYK--RRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 674 ~~la---~~~~~~g~~~eA~~~l~--~al~-~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~l~p~ 736 (760)
..+- ..-..++..++....+. ..++ .+.....+....+.++. .+.+|..|+..|..-+..+|-
T Consensus 247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 2211 11122334444333332 2233 23334556666666663 345788888888877665554
No 360
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.11 E-value=46 Score=39.32 Aligned_cols=278 Identities=10% Similarity=-0.050 Sum_probs=143.3
Q ss_pred hcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH------------------HH
Q 004340 444 CMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGM------------------DI 505 (760)
Q Consensus 444 ~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------------~~ 505 (760)
..+++.+-+..+. ..|.+....+..+.+....|+-++|.....++.......+... ..
T Consensus 111 ~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~ 186 (644)
T PRK11619 111 RREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLE 186 (644)
T ss_pred HccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHH
Confidence 3567776666332 2367778888888889999998888777766654433222211 11
Q ss_pred HHHHHHHccCHHHHHHHHHHH-----------H--HhCCC-----------CH--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004340 506 YSTVLYHLKEDMKLSYLAQEL-----------I--TTDRL-----------AP--QSWCAMGNCYSLQKDHETALKNFQR 559 (760)
Q Consensus 506 la~~l~~l~~~~~a~~~~~~~-----------l--~~~p~-----------~~--~~~~~la~~~~~~g~~~~A~~~~~k 559 (760)
........++...+..+...+ + ..+|. +. .....++.......+.+.|...+.+
T Consensus 187 R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~ 266 (644)
T PRK11619 187 RIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPS 266 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 222222333333222222111 0 00110 10 1112223333344555666666655
Q ss_pred HHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004340 560 AVQLNPRFA----YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (760)
Q Consensus 560 al~~~p~~~----~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 635 (760)
......-.. .++..+|.-....+..++|...+..+.... .+...+-....+....++++.+...+...-......
T Consensus 267 ~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~ 345 (644)
T PRK11619 267 LVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEK 345 (644)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccC
Confidence 433332211 222333333333322455555555544322 122333333444457777877777776654434455
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------------h------HHHHHHHHHHHHcCCHH
Q 004340 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN----------------------P------LPMYQKANILLSLEKFD 687 (760)
Q Consensus 636 ~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~----------------------~------~~~~~la~~~~~~g~~~ 687 (760)
....+-+|.++...|+.++|..+|+++.... +. . ......+..+...|+..
T Consensus 346 ~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~-~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~ 424 (644)
T PRK11619 346 DEWRYWQADLLLEQGRKAEAEEILRQLMQQR-GFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDN 424 (644)
T ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHhcCC-CcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHH
Confidence 6667778888777888888888888874321 00 0 01233455566667777
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 688 EALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGL 729 (760)
Q Consensus 688 eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 729 (760)
.|...+..++.. .+..-...++.+....|.++.|+....+
T Consensus 425 ~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 425 TARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 776666666553 2344556666666677777766665544
No 361
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.61 E-value=0.65 Score=47.79 Aligned_cols=82 Identities=15% Similarity=0.211 Sum_probs=48.6
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004340 526 LITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTL-CGHEYVALEDFENGIRSYQSALRVDARHYNS 604 (760)
Q Consensus 526 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~-la~~~~~~g~~e~A~~~~~~al~~~p~~~~a 604 (760)
.....+.++..|...+......|-+.+--..|..+++..|.+++.|.. .+.-+...++++.+...|.++++.+|+.+..
T Consensus 99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 333445556666666665556666666666666666666666666654 4555556666666666666666666666555
Q ss_pred HHH
Q 004340 605 WYG 607 (760)
Q Consensus 605 ~~~ 607 (760)
|+.
T Consensus 179 w~e 181 (435)
T COG5191 179 WIE 181 (435)
T ss_pred HHH
Confidence 543
No 362
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.51 E-value=40 Score=37.68 Aligned_cols=78 Identities=12% Similarity=0.110 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 516 ~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al 595 (760)
..-...++.+++... .+-.+++.++.+|... ..++-...+++.++.+-++...-..++..|.. ++.+++..+|.+++
T Consensus 82 ~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 82 NQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 333444555555543 2345666666776666 44555666666666666666555566665555 66666666776666
Q ss_pred H
Q 004340 596 R 596 (760)
Q Consensus 596 ~ 596 (760)
.
T Consensus 159 y 159 (711)
T COG1747 159 Y 159 (711)
T ss_pred H
Confidence 4
No 363
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.41 E-value=52 Score=38.92 Aligned_cols=300 Identities=12% Similarity=0.005 Sum_probs=150.6
Q ss_pred HHhcCChHHHHHHHhcccccC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH----HHHHH--H
Q 004340 442 MSCMYRCKDALDVYLKLPHKH-------YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEG----MDIYS--T 508 (760)
Q Consensus 442 ~~~~g~~~eAi~~l~~~~~~~-------p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la--~ 508 (760)
....++++....+|.+++..- -.....+...-..|...-..++-+.+|...+... .+.++ +.... .
T Consensus 200 ~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h 278 (881)
T KOG0128|consen 200 AKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAH 278 (881)
T ss_pred ccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcc
Confidence 344566666777777654421 1123344555556666666677777777777654 22111 11111 0
Q ss_pred H-HHHccCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Q 004340 509 V-LYHLKED-------MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYV- 579 (760)
Q Consensus 509 ~-l~~l~~~-------~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~- 579 (760)
. .....+. .+....+.+.+...+..-..|..+.......|++-.-...+++++...+.+...|...+...-
T Consensus 279 ~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~ 358 (881)
T KOG0128|consen 279 VYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDT 358 (881)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccc
Confidence 0 0011111 222334455555566566677777777778888888888888888877777777766654332
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-Hc--------
Q 004340 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKF-EFSEHHFRMAFQISPHSSVIMSYLGTAMH-AL-------- 649 (760)
Q Consensus 580 ~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~-~~A~~~l~~al~~~p~~~~~~~~la~~~~-~~-------- 649 (760)
.++-.+.+...+-++++..|.....|...-..+.+.+.. ..-...+.+++.. ...+++....++ ..
T Consensus 359 eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~----~~~l~~~~~~~rr~~~~~~~s~~ 434 (881)
T KOG0128|consen 359 ELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM----TVELHNDYLAYRRRCTNIIDSQD 434 (881)
T ss_pred ccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHhhcccchhhh
Confidence 244444555666666666665554443332222222211 1112222222211 000111111111 11
Q ss_pred -----CChHHHHHHHHHHHHh-CCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHcCCHH
Q 004340 650 -----KRSGEAIEMMEKAILA-DKKNPLPMYQKANILL-SLEKFDEALEVLEELKEYAPRESG-VYALMGKIYKRRNMHE 721 (760)
Q Consensus 650 -----g~~~eAl~~l~~al~~-~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~~~~-~~~~la~~~~~~g~~~ 721 (760)
..+..|..+|...... .......+-..|.++. .+++.+.|..+++..+........ .|+....+-...|+..
T Consensus 435 ~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~ 514 (881)
T KOG0128|consen 435 YSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGP 514 (881)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCch
Confidence 1233444444443332 1112233344454443 345777777777766655444333 6666677777778888
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Q 004340 722 KAMLHFGLALDLKPSATDVATIKAA 746 (760)
Q Consensus 722 ~A~~~~~~al~l~p~~~~a~~~l~~ 746 (760)
.|..++++|+..--+..++..++..
T Consensus 515 ~~R~~~R~ay~~~~~~~~~~ev~~~ 539 (881)
T KOG0128|consen 515 SARKVLRKAYSQVVDPEDALEVLEF 539 (881)
T ss_pred hHHHHHHHHHhcCcCchhHHHHHHH
Confidence 8888777777643333233344433
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.38 E-value=2.3 Score=36.36 Aligned_cols=75 Identities=16% Similarity=0.069 Sum_probs=63.5
Q ss_pred HhhccchhHHHHHHhhhhcCCCchhhHH-HHHHHhhcCCHHHHHHHhccCCCcchhHHHHHHHHhcCChhHHHHhh
Q 004340 13 LRYFMYRNAIFLCERLCAEFPSEVNLQL-LATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSEAEAAL 87 (760)
Q Consensus 13 l~~~~~~~A~flaerl~a~~~~~~~~~l-lA~~~~~~~~~~~a~~~l~~~~~~~~~yl~a~c~~~l~~~~ea~~~l 87 (760)
=-+|-++.|.-+|+=|......+|.+-+ -...+...|+|..|..++.....|..--++|.|-.++|.-+.++.-|
T Consensus 16 TG~HcHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~rlGl~s~l~~rl 91 (115)
T TIGR02508 16 TGHHCHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEWRLGLGSALESRL 91 (115)
T ss_pred ccchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHHhhccHHHHHHHH
Confidence 3477889999999999988876665444 46778888999999999999888888889999999999998888776
No 365
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=89.35 E-value=3.2 Score=36.00 Aligned_cols=85 Identities=13% Similarity=0.045 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhccchhHHHHHHhhhhcCCCchh-hHHHHHHHhhcCCHHHHHHHhccCCCcchhHHHHHHHHhcCChhH
Q 004340 4 ILTDCVQNSLRYFMYRNAIFLCERLCAEFPSEVN-LQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSE 82 (760)
Q Consensus 4 ~l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~-~~llA~~~~~~~~~~~a~~~l~~~~~~~~~yl~a~c~~~l~~~~e 82 (760)
.|.++---.--+|-++.|.-+||=|-.+...+|. ...-...+.+.|+|..|..+-.....|..-=+||.|-.++|.-++
T Consensus 8 lLAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~klGL~~~ 87 (116)
T PF09477_consen 8 LLAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAWKLGLASA 87 (116)
T ss_dssp HHHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHHhhccHHH
Confidence 3444444455688899999999999999987764 455688999999999995555556788888899999999999999
Q ss_pred HHHhhC
Q 004340 83 AEAALS 88 (760)
Q Consensus 83 a~~~l~ 88 (760)
++.-|.
T Consensus 88 ~e~~l~ 93 (116)
T PF09477_consen 88 LESRLT 93 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988774
No 366
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.31 E-value=0.86 Score=31.84 Aligned_cols=30 Identities=23% Similarity=0.160 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 004340 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRA 495 (760)
Q Consensus 466 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 495 (760)
..++..+|.+|...|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357888999999999999999999999875
No 367
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.86 E-value=1.7 Score=37.15 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 706 VYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 706 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
+...+|.++...|++++|+..+++++++...
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666654433
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.66 E-value=2.5 Score=34.59 Aligned_cols=63 Identities=17% Similarity=0.063 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGW---VLSQVGKAYFEVVDYLEAERAFTLARR 494 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~---~l~~la~~~~~~g~~~~A~~~~~~al~ 494 (760)
....+.+|..++...+.++|+..+.++++..++.+. ++-.+..+|.+.|+|.+++++-.+=++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888899999999988877666544 445556677888888888877655444
No 369
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.64 E-value=0.79 Score=32.01 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 004340 101 AAGHYLMGLIYRYTDRRKNAIHHYKMALSI 130 (760)
Q Consensus 101 a~~~~llg~i~~~~~~~~~A~~~~~~AL~~ 130 (760)
+.++.-||.+|..+|+.++|..++.+|+.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457888999999999999999999999986
No 370
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=88.41 E-value=0.92 Score=46.74 Aligned_cols=88 Identities=9% Similarity=0.016 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 556 NFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYG-LGMVYLRQEKFEFSEHHFRMAFQISPH 634 (760)
Q Consensus 556 ~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~-la~~~~~~g~~~~A~~~l~~al~~~p~ 634 (760)
.|.++....+.++..|...+......+.+.+--..|.++++..|.+.+.|.. -+.-+...++++.+...|.+++..+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4455555566777777777776667777777777777777777777777765 445566677777777777777777777
Q ss_pred CHHHHHHHH
Q 004340 635 SSVIMSYLG 643 (760)
Q Consensus 635 ~~~~~~~la 643 (760)
.+.+|...-
T Consensus 175 ~p~iw~eyf 183 (435)
T COG5191 175 SPRIWIEYF 183 (435)
T ss_pred CchHHHHHH
Confidence 777765543
No 371
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=87.77 E-value=39 Score=35.49 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHH
Q 004340 687 DEALEVLEELKEYAPRESGVYALM 710 (760)
Q Consensus 687 ~eA~~~l~~al~~~p~~~~~~~~l 710 (760)
..|++.+.++++.+|.-+..+..+
T Consensus 379 ~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHHHHH
Confidence 357888888888888766554443
No 372
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.56 E-value=3.6 Score=42.20 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 004340 639 MSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKI 713 (760)
Q Consensus 639 ~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~ 713 (760)
..++=..+...++++.|..+.++.+.++|.++.-+...|.+|.++|-+.-|++.++..++..|+++.+-...+..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344555677778888888888888888888888888888888888888888888888888888877665544443
No 373
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.34 E-value=0.87 Score=31.73 Aligned_cols=29 Identities=31% Similarity=0.309 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 004340 102 AGHYLMGLIYRYTDRRKNAIHHYKMALSI 130 (760)
Q Consensus 102 ~~~~llg~i~~~~~~~~~A~~~~~~AL~~ 130 (760)
-+|.+||.|....++++.|++-|++||++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 37899999999999999999999999987
No 374
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=87.12 E-value=30 Score=33.38 Aligned_cols=184 Identities=18% Similarity=0.159 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHH
Q 004340 531 RLAPQSWCAMGNCYSL-QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYV-----ALEDFENGIRSYQSALRVDARHYNS 604 (760)
Q Consensus 531 p~~~~~~~~la~~~~~-~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~-----~~g~~e~A~~~~~~al~~~p~~~~a 604 (760)
...|+....||..+.. +.++++|.++|+.--..+ ..+..-+.+|..++ ..++...|++.|..+.. .+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 4567888888877654 457788887777654433 23444444454433 24577888888887765 445667
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHHHH
Q 004340 605 WYGLGMVYLRQ-----E--KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK--KNPLPMYQ 675 (760)
Q Consensus 605 ~~~la~~~~~~-----g--~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p--~~~~~~~~ 675 (760)
...+|.++..- + +.++|++++.++-... +..+.+.|...++.-. ++ +....| ..+. .
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~---~ 173 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKPL---D 173 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCCc---c
Confidence 77777766532 2 3678888888876554 4455555555544321 11 111133 1221 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhc
Q 004340 676 KANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRR----NMHEKAMLHFGLALDL 733 (760)
Q Consensus 676 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~l 733 (760)
.+..+.-..+.+.|.++--++-++. .+.+..++.+.|..- .+.++|..+-.+|.++
T Consensus 174 ~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 174 RAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 3444555567888888888877764 467777777777542 3567787777777654
No 375
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.87 E-value=45 Score=35.26 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 516 DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 516 ~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al 595 (760)
-.+++.+-.-+..+-|..|+++-.++.+.+..-+...=...=-..+-+...+.. ....+-.+++...+.+++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~--------lW~r~lI~eg~all~rA~ 283 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRS--------LWDRALIDEGLALLDRAL 283 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchh--------hhhHHHHHHHHHHHHHHH
Confidence 578888888888999999999888877765432221100000000111112222 223344667777788877
Q ss_pred HhC-CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CC
Q 004340 596 RVD-ARHYNSWYGLGMVYLR-----QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA--DK 667 (760)
Q Consensus 596 ~~~-p~~~~a~~~la~~~~~-----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~--~p 667 (760)
... |.-+...-.++-++.. .-+|..-..+|.-...+.|. +.+-.+.+.+..+..-.+.++...+..... -.
T Consensus 284 ~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~ 362 (415)
T COG4941 284 ASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLD 362 (415)
T ss_pred HcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccc
Confidence 653 4444444455555443 24677777777776666665 555556777777777778888877766654 22
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 004340 668 KNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKI 713 (760)
Q Consensus 668 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~ 713 (760)
.+...+-..|.++.++|+.++|...|++++.+.++..+..+.....
T Consensus 363 gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 363 GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3344566789999999999999999999999998877666655443
No 376
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.75 E-value=9.8 Score=41.14 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=60.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-------------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004340 574 CGHEYVALEDFENGIRSYQSALRVDAR-------------H-----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (760)
Q Consensus 574 la~~~~~~g~~e~A~~~~~~al~~~p~-------------~-----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 635 (760)
=|..+++.++|..|..-|..++++... + ...-..|..||+.+++.+.|+....+.+-.+|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 456677888888888888888876221 1 0123446677777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004340 636 SVIMSYLGTAMHALKRSGEAIEMMEKA 662 (760)
Q Consensus 636 ~~~~~~la~~~~~~g~~~eAl~~l~~a 662 (760)
..-+...|.+...+.+|.+|.+-+--+
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766654433
No 377
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.50 E-value=5.7 Score=41.23 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 636 ~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
..++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|+++..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445666777777777777777777777777777777777777777777777777777776655
No 378
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.38 E-value=49 Score=40.02 Aligned_cols=112 Identities=13% Similarity=0.028 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHHHH----
Q 004340 468 VLSQVGKAYFEVVDYLEAERAFTLARR----ASPYSLEGMDIYSTVLYHLKED--MKLSYLAQELITTDRLAPQSW---- 537 (760)
Q Consensus 468 ~l~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~l~~l~~~--~~a~~~~~~~l~~~p~~~~~~---- 537 (760)
-+..++..|...|+.++|++.+.+... .++...+.+......+..++.. .-...+..=.++.+|....-.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 367789999999999999999999887 3344444555544445555543 334444444444444322100
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 004340 538 ---------CAMGNCYSLQKDHETALKNFQRAVQLNPR-FAYGHTLCGHEYV 579 (760)
Q Consensus 538 ---------~~la~~~~~~g~~~~A~~~~~kal~~~p~-~~~a~~~la~~~~ 579 (760)
.....-|......+-++.+++.++..... ....+..++..|.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 11122345566777788888888776544 3334444444443
No 379
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.86 E-value=4.6 Score=41.91 Aligned_cols=62 Identities=11% Similarity=0.192 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~ 596 (760)
.++..++..+...|+++.++..+++.+..+|.+..+|..+-..|...|+...|+..|+++-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 44556666777777777777777777777777777777777777777777777777776655
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.84 E-value=8.7 Score=42.18 Aligned_cols=62 Identities=13% Similarity=-0.003 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCCCCH--HHH--HHHHHHHHHccCHHHHHHHHHHHHHH
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTG--WVL--SQVGKAYFEVVDYLEAERAFTLARRA 495 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~--~~l--~~la~~~~~~g~~~~A~~~~~~al~~ 495 (760)
..+.++..++..++|..|.++|..+...-+... ..+ ...|.-+...-++++|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556788899999999999999999877533222 233 33455667899999999999998775
No 381
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.64 E-value=6.4 Score=38.60 Aligned_cols=53 Identities=19% Similarity=0.170 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHH
Q 004340 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDAR----HYNSWYGLGMVYLRQEKFEFS 621 (760)
Q Consensus 568 ~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A 621 (760)
++..+.+|..|. ..+.++|+..+.+++++... +++.+..|+.++.++|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444443333 34444455555554444221 244555555555555555544
No 382
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.21 E-value=25 Score=32.03 Aligned_cols=32 Identities=19% Similarity=0.082 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCC
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHY 463 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p 463 (760)
+++.|.+|...+-.|..++.+++..+.....+
T Consensus 2 l~kkLmeAK~~ildG~V~qGveii~k~v~Ssn 33 (161)
T PF09205_consen 2 LLKKLMEAKERILDGDVKQGVEIIEKTVNSSN 33 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHcCcCC
Confidence 56777888889999999999999998766554
No 383
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=84.89 E-value=29 Score=38.70 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 707 YALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 707 ~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
+..-|.-|.+.|+...|..+|..++....
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 44556778889999999999999887654
No 384
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.54 E-value=3.9 Score=29.57 Aligned_cols=24 Identities=13% Similarity=-0.002 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 708 ALMGKIYKRRNMHEKAMLHFGLAL 731 (760)
Q Consensus 708 ~~la~~~~~~g~~~~A~~~~~~al 731 (760)
+.+|.+|..+|+.+.|.+.+++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345566666666666666666665
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.43 E-value=4.5 Score=34.60 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh
Q 004340 640 SYLGTAMHALKRSGEAIEMMEKAILA 665 (760)
Q Consensus 640 ~~la~~~~~~g~~~eAl~~l~~al~~ 665 (760)
..+|.++...|++++|+..+++++.+
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 386
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.35 E-value=76 Score=35.58 Aligned_cols=182 Identities=10% Similarity=-0.053 Sum_probs=114.1
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 461 KHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAM 540 (760)
Q Consensus 461 ~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~l 540 (760)
..|-+...+..+-.++-....+.-...++.+++.... +.-++..++.+|... ..++...+++++++.+-++...-..+
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 3444555666666667777777888888888888754 456777888888887 66778888899999998888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHH-HHHHH
Q 004340 541 GNCYSLQKDHETALKNFQRAVQLN-PR--F---AYGHTLCGHEYVALEDFENGIRSYQSALRVDA-RHYNSWYG-LGMVY 612 (760)
Q Consensus 541 a~~~~~~g~~~~A~~~~~kal~~~-p~--~---~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p-~~~~a~~~-la~~~ 612 (760)
+..|.. ++-..+..+|.+++... |. + .+.|..+-. +--.+.+.-+....+.-.... ....+.+. +-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 888877 88899999999987642 21 1 122322221 112334444443333322211 11222222 22344
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 613 LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 647 (760)
....+|.+|++.+.-.++.+..+..+.-.+...+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 55667777777777777777666666655554443
No 387
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.90 E-value=49 Score=36.82 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=18.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004340 641 YLGTAMHALKRSGEAIEMMEKAILADK 667 (760)
Q Consensus 641 ~la~~~~~~g~~~eAl~~l~~al~~~p 667 (760)
.-|.-|.+.|+...|+.+|..++....
T Consensus 375 LAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 375 LAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 345666777777777777777766543
No 388
>PRK12798 chemotaxis protein; Reviewed
Probab=83.46 E-value=75 Score=34.85 Aligned_cols=194 Identities=13% Similarity=0.045 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcccccC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH---HHHHHHH
Q 004340 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKH-Y-NTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL---EGMDIYS 507 (760)
Q Consensus 433 l~~l~~a~~~~~~g~~~eAi~~l~~~~~~~-p-~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la 507 (760)
-..+.+|...+-.|+-.+|.+.+..+.... | .-+-.+....-..+...+..+|+.+|+.+.=..|... .++..-.
T Consensus 113 d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi 192 (421)
T PRK12798 113 DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSL 192 (421)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Confidence 355667777888999999999999875433 2 2233333344456677899999999999999999753 2344444
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHh-CCC-CHHHHHHHHHHHHHcC
Q 004340 508 TVLYHLKEDMKLSYLAQELITTDRLAPQS---WCAMGNCYSLQKDHETALKNFQRAVQL-NPR-FAYGHTLCGHEYVALE 582 (760)
Q Consensus 508 ~~l~~l~~~~~a~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~kal~~-~p~-~~~a~~~la~~~~~~g 582 (760)
.+....|+.++...+..+.+.....++.+ +-..........+-..- ..+...+.. +|. ....|..++..-...|
T Consensus 193 ~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~G 271 (421)
T PRK12798 193 FIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDG 271 (421)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcC
Confidence 45566677777777666666665555432 22222233222211111 123333332 332 2345556666666666
Q ss_pred CHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 583 DFENGIRSYQSALRVDAR----HYNSWYGLGMVYLRQEKFEFSEHHFRM 627 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~l~~ 627 (760)
+.+-|.-.-.+++.+... ...+.+..+....-..++++|.+.+..
T Consensus 272 k~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 272 KTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQ 320 (421)
T ss_pred cHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhc
Confidence 666666666666655321 122333333333334445555544443
No 389
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=83.34 E-value=13 Score=40.33 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 539 AMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQS 593 (760)
Q Consensus 539 ~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~ 593 (760)
.+..||...++.+.|+....+.+.++|....-+...|.++..+.+|.+|...+.-
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666655555666666666666655544433
No 390
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.33 E-value=1.4 Score=27.68 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFT 490 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~ 490 (760)
++.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 466778888888888888888765
No 391
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.16 E-value=28 Score=35.69 Aligned_cols=81 Identities=27% Similarity=0.172 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcC
Q 004340 651 RSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEELKEYAPRE------SGVYALMGKIYKRRN 718 (760)
Q Consensus 651 ~~~eAl~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~la~~~~~~g 718 (760)
.-...++++.+|++..... ..+...+|..|+..|++++|+++|+.+......+ ..+...+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3445677777777654322 2455679999999999999999999997654432 467788889999999
Q ss_pred CHHHHHHHHHHHH
Q 004340 719 MHEKAMLHFGLAL 731 (760)
Q Consensus 719 ~~~~A~~~~~~al 731 (760)
+.+..+.+.-+.+
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9988877654443
No 392
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=83.07 E-value=46 Score=32.11 Aligned_cols=184 Identities=14% Similarity=0.057 Sum_probs=116.7
Q ss_pred CCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCHHH
Q 004340 497 PYSLEGMDIYSTVLYHLK-EDMKLSYLAQELITTDRLAPQSWCAMGNCYSL-----QKDHETALKNFQRAVQLNPRFAYG 570 (760)
Q Consensus 497 p~~~~~~~~la~~l~~l~-~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~kal~~~p~~~~a 570 (760)
...+++-..++..+.-.. ++++|...+..--+. ...+...+.+|..++. .++...|++.+..+-. .+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 345666666666554443 355555555443322 3457788888887763 4678899999998866 456778
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 004340 571 HTLCGHEYVAL-----E--DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH--SSVIMSY 641 (760)
Q Consensus 571 ~~~la~~~~~~-----g--~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~ 641 (760)
-..+|.++..- + +.++|.+++.++..+. +..+.+.|...|+.-. ++ +....|. .+..
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~~--- 173 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKPLD--- 173 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCCcc---
Confidence 88888877642 2 3789999999987654 4566666666555322 22 2222331 1221
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Q 004340 642 LGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSL----EKFDEALEVLEELKEY 699 (760)
Q Consensus 642 la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~eA~~~l~~al~~ 699 (760)
.+..+.-..+.+.|.++--+|.+++ .+.+..++.+.|..- .+-++|..+-+++.++
T Consensus 174 ~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 174 RAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 2344455578889999998888875 566666777776532 2567777777777665
No 393
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.00 E-value=11 Score=36.97 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHH
Q 004340 532 LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR----FAYGHTLCGHEYVALEDFENG 587 (760)
Q Consensus 532 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~----~~~a~~~la~~~~~~g~~e~A 587 (760)
++++..+.+|..|. ..+.++|+.++.+++++.+. +++++..|+.+|...|+++.|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34555555555444 34555555555555554222 345555555555555555554
No 394
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.97 E-value=3.9 Score=28.13 Aligned_cols=32 Identities=6% Similarity=0.095 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCC
Q 004340 535 QSWCAMGNCYSLQKDHETALKN--FQRAVQLNPR 566 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~--~~kal~~~p~ 566 (760)
+.|+.+|..+...|++++|+.. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566666677777777777777 3355555443
No 395
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.06 E-value=2.1 Score=26.87 Aligned_cols=15 Identities=40% Similarity=0.248 Sum_probs=5.6
Q ss_pred HHHHHHHcCCHHHHH
Q 004340 676 KANILLSLEKFDEAL 690 (760)
Q Consensus 676 la~~~~~~g~~~eA~ 690 (760)
+|.++...|++++|.
T Consensus 7 la~~~~~~G~~~eA~ 21 (26)
T PF07721_consen 7 LARALLAQGDPDEAE 21 (26)
T ss_pred HHHHHHHcCCHHHHH
Confidence 333333333333333
No 396
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.96 E-value=24 Score=41.60 Aligned_cols=190 Identities=13% Similarity=0.093 Sum_probs=103.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHH
Q 004340 507 STVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL-NPRFAYGHTLCGHEYVALEDFE 585 (760)
Q Consensus 507 a~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~-~p~~~~a~~~la~~~~~~g~~e 585 (760)
..++....-+.-|+.+++..-.-...-.+.....|..++..|++++|...|-+.+.. +|... ..-|.......
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V------i~kfLdaq~Ik 414 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV------IKKFLDAQRIK 414 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH------HHHhcCHHHHH
Confidence 344555555666665544321111112356677788888999999999998888764 33221 11223444444
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHH
Q 004340 586 NGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVI--MSYLGTAMHALKRSGEAIEMMEKAI 663 (760)
Q Consensus 586 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~--~~~la~~~~~~g~~~eAl~~l~~al 663 (760)
+-..+++...+..-.+..--..|-.+|.++++.++-.++.++ .+..... .-..-.++.+.+-+++|..+..+.-
T Consensus 415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 445555555555444444455677888898888775554443 3311111 1122344555555566655444331
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHH
Q 004340 664 LADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE-SGVYALMGKIYKR 716 (760)
Q Consensus 664 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~~~~la~~~~~ 716 (760)
. +. ..+-.++..+|+|++|+.++..+ .|.. .......|+.+..
T Consensus 491 ~----he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~ 534 (933)
T KOG2114|consen 491 K----HE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE 534 (933)
T ss_pred c----CH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh
Confidence 1 12 23445677788999999888753 2221 2334445555544
No 397
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.82 E-value=25 Score=36.43 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al 595 (760)
+...+..|...|.+.+|+.+.++++.++|-+...+..+..++...|+--.|++.|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456677777888888888888888888777778778888888887777777776653
No 398
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.75 E-value=13 Score=30.47 Aligned_cols=35 Identities=9% Similarity=0.016 Sum_probs=24.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Q 004340 469 LSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGM 503 (760)
Q Consensus 469 l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 503 (760)
....|.-+|...+.++|+..++++++..++..+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf 43 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRF 43 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHH
Confidence 34456667777788888888888888776654433
No 399
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.72 E-value=74 Score=32.90 Aligned_cols=82 Identities=9% Similarity=-0.027 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004340 566 RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA 645 (760)
Q Consensus 566 ~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 645 (760)
.++..+..+|..|.+.|++.+|..+|-.. ++....... .-.+....+-.|.....+...+.+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~-------------~ll~~~~~~~~~~e~dlfi~RaVL 149 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYV-------------MLLEEWSTKGYPSEADLFIARAVL 149 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHH-------------HHHHHHHHHTSS--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHH-------------HHHHHHHHhcCCcchhHHHHHHHH
Confidence 46777888888888888888777666432 111111110 000111222344445555444443
Q ss_pred -HHHcCChHHHHHHHHHHHHh
Q 004340 646 -MHALKRSGEAIEMMEKAILA 665 (760)
Q Consensus 646 -~~~~g~~~eAl~~l~~al~~ 665 (760)
|...++...|...+...++.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 45567888888777666655
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.32 E-value=55 Score=36.03 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAI 663 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al 663 (760)
+++.+|.+|..+++|.+|++.|...+
T Consensus 166 ~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 166 TYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554443
No 401
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=79.76 E-value=5.4 Score=27.43 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCC
Q 004340 706 VYALMGKIYKRRNMHEKAMLH--FGLALDLKP 735 (760)
Q Consensus 706 ~~~~la~~~~~~g~~~~A~~~--~~~al~l~p 735 (760)
.++.+|-.+...|++++|+.. |.-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344455555555555555555 224444444
No 402
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=79.17 E-value=46 Score=33.86 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRF-AYGHTLCGHEYVA-LEDFENGIRSYQSA 594 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~-~~a~~~la~~~~~-~g~~e~A~~~~~~a 594 (760)
+..+|.+....++|++.+.++++++..++.. .+-...+..+|-. .|....+...+...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 4556777777777777777777777776543 2334444444422 33334444444333
No 403
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.14 E-value=25 Score=39.91 Aligned_cols=100 Identities=16% Similarity=0.024 Sum_probs=58.2
Q ss_pred HHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Q 004340 441 RMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLS 520 (760)
Q Consensus 441 ~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~ 520 (760)
.+.-.++++.|...+-.+.+. ....++..+..+|-.++|++ +.++... .-.+..++|+.+.|.
T Consensus 595 t~vmrrd~~~a~~vLp~I~k~------~rt~va~Fle~~g~~e~AL~-------~s~D~d~----rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIPKE------IRTKVAHFLESQGMKEQALE-------LSTDPDQ----RFELALKLGRLDIAF 657 (794)
T ss_pred HHhhhccccccccccccCchh------hhhhHHhHhhhccchHhhhh-------cCCChhh----hhhhhhhcCcHHHHH
Confidence 344567888888766666532 23345555666666555544 4443211 112334556666665
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004340 521 YLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQ 562 (760)
Q Consensus 521 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~ 562 (760)
.++.++ ++..-|..||.+....+++..|.++|.++..
T Consensus 658 ~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 658 DLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 554333 4456677777777777777777777777644
No 404
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=78.98 E-value=3.5 Score=28.76 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFTLARRA 495 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~~al~~ 495 (760)
.++..+|.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999999999876
No 405
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.75 E-value=80 Score=38.29 Aligned_cols=163 Identities=16% Similarity=0.042 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH------
Q 004340 536 SWCAMGNCYSLQKDHETALKNFQRAVQL----NPRFAYGHTLCGHEYVALEDF--ENGIRSYQSALRVDARHYN------ 603 (760)
Q Consensus 536 ~~~~la~~~~~~g~~~~A~~~~~kal~~----~p~~~~a~~~la~~~~~~g~~--e~A~~~~~~al~~~p~~~~------ 603 (760)
-+..|+.+|...|++++|++.+.+.... ++.....+-..-..+...+.- +-..++-...+..+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 4678899999999999999999998873 333334444433334444444 5566666666655553210
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--------CChHHHHHH--HHHHHHh
Q 004340 604 -------SWYGLGMVYLRQEKFEFSEHHFRMAFQISPH-SSVIMSYLGTAMHAL--------KRSGEAIEM--MEKAILA 665 (760)
Q Consensus 604 -------a~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~~la~~~~~~--------g~~~eAl~~--l~~al~~ 665 (760)
.-.....-|......+-++.|++.++..... ....+..++..|.+. ++-++|.+. .++....
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 0111223356677888899999999887665 344444455444432 122344444 2222211
Q ss_pred -------CCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 666 -------DKK-------NPLPMYQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 666 -------~p~-------~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
+|. ....|...+.++.++|+.++|+..|-..+.
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 121 135567788888899999999888876654
No 406
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.84 E-value=74 Score=32.39 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=23.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Q 004340 469 LSQVGKAYFEVVDYLEAERAFTLARRASPY 498 (760)
Q Consensus 469 l~~la~~~~~~g~~~~A~~~~~~al~~~p~ 498 (760)
+..+|+++.+.|+|++++.++++++..++.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 456788888888888888888888888664
No 407
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.44 E-value=8.4 Score=39.72 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=20.5
Q ss_pred CcchHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004340 97 IPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALS 129 (760)
Q Consensus 97 ~p~~a~~~~llg~i~~~~~~~~~A~~~~~~AL~ 129 (760)
+.|.+++.-+|-.|..+.++......+-.+||.
T Consensus 6 VDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~ 38 (361)
T COG3947 6 VDDDAAIVKLLSVILSRAGHEVRSCSHPVEALD 38 (361)
T ss_pred EcchHHHHHHHHHHHHhccchhhccCCHHHHHH
Confidence 456667777777777777755555555555443
No 408
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=76.10 E-value=7.3 Score=40.47 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 587 GIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA 648 (760)
Q Consensus 587 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 648 (760)
|+.+|.+|+.+.|.....|..+|.++...|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777766665443345566666666555
No 409
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.73 E-value=9.6 Score=39.57 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 553 ALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (760)
Q Consensus 553 A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~ 614 (760)
|+.+|.+|+.+.|.....|..+|.++...|+.=.|+-+|-+++-.......+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777776544446666666666655
No 410
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=75.46 E-value=6.3 Score=42.00 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=47.7
Q ss_pred chhHHHH---HHHHhcCChhHHHHhhCCCCCCCccCcch--------HHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCc
Q 004340 65 LSRYLFA---VACYQMDLLSEAEAALSPVNEPSAEIPNG--------AAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPL 133 (760)
Q Consensus 65 ~~~yl~a---~c~~~l~~~~ea~~~l~~~~~~~~~~p~~--------a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~ 133 (760)
||.|+.. +.+++|+..+-+...+..... .+.||. -.-+|+||++|....+.++|-.++.+|+.+.|.
T Consensus 175 g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~--vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 175 GLYYIANLLFQIYLRLGRFKLCENFLKASKE--VSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhccc--ccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 5555443 445677777766665543221 112222 235999999999999999999999999999998
Q ss_pred c
Q 004340 134 L 134 (760)
Q Consensus 134 ~ 134 (760)
+
T Consensus 253 l 253 (413)
T COG5600 253 L 253 (413)
T ss_pred h
Confidence 7
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.72 E-value=51 Score=36.21 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=38.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH--HHHHH--HHHHHHccCHHHHHHHHHHHHHh
Q 004340 470 SQVGKAYFEVVDYLEAERAFTLARRASPYSLE--GMDIY--STVLYHLKEDMKLSYLAQELITT 529 (760)
Q Consensus 470 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~l~~l~~~~~a~~~~~~~l~~ 529 (760)
...+..++..++|..|.++|..+...-|.... .+..+ +..+|..-++.+|...++.+...
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566778889999999999999886344333 22222 33445566666666666665544
No 412
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=73.59 E-value=59 Score=37.99 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 004340 464 NTGWVLSQVGKAYFEVVDYLEAERAFTLARR 494 (760)
Q Consensus 464 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 494 (760)
-.+.+-..+-..|....+|+.-+++.+.+-+
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 3566777777778888888877777666544
No 413
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=73.35 E-value=5.5 Score=42.15 Aligned_cols=128 Identities=19% Similarity=0.248 Sum_probs=82.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 004340 574 CGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSG 653 (760)
Q Consensus 574 la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (760)
.+...+..++++.|..-|.+++..... ..... ..+... +.......-...+..++.+-.+.+.+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~-----------~s~~~-~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSE-----------QSRDR-EKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcc-----------ccccc-cccccc---ccccccccccccccchHHhcccccCCC
Confidence 477788889999998888887764221 00000 001111 011111222334455777777788888
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 004340 654 EAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKR 716 (760)
Q Consensus 654 eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~ 716 (760)
.|+.....++..++....+++.++..+..+.++++|++.++.+....|++..+...+..+-..
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 888777777777777777888888888888888888888888888888777665555444433
No 414
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=72.34 E-value=4.7 Score=42.62 Aligned_cols=125 Identities=12% Similarity=0.053 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 004340 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK 685 (760)
Q Consensus 606 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~ 685 (760)
...+.-.++.++++.|..-+.+++..-.. ....+..+... +...+...-...+.+++.+-.+.+.
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~------------~s~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~ 290 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSE------------QSRDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKG 290 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhcc------------ccccccccccc---ccccccccccccccchHHhcccccC
Confidence 35677788999999999999888754211 00000011111 0111122223445568889999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004340 686 FDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 686 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
+..|+..-..+++.++....+++..+..+..+.++++|++.+..+....|++..+...+.
T Consensus 291 ~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~ 350 (372)
T KOG0546|consen 291 RGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE 350 (372)
T ss_pred CCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence 999999888888888888899999999999999999999999999999999987655444
No 415
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=71.24 E-value=82 Score=28.70 Aligned_cols=35 Identities=17% Similarity=0.064 Sum_probs=18.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA 580 (760)
Q Consensus 546 ~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~ 580 (760)
..+.....+.+++.++..++.+...+..+..+|..
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 33455555555555555554444455555555543
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.96 E-value=12 Score=41.02 Aligned_cols=69 Identities=20% Similarity=0.160 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHhccccc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 004340 426 ASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHK--------HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARR 494 (760)
Q Consensus 426 ~~~l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~--------~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 494 (760)
.-..+..+..++....+.-.|+|..|++.++.+.-. .+-...+++.+|-+|+-+++|.+|++.|..++-
T Consensus 116 l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 116 LYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888999999999999876321 123456789999999999999999999998864
No 417
>PF13041 PPR_2: PPR repeat family
Probab=69.32 E-value=22 Score=26.00 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 706 VYALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 706 ~~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
.|..+-..|.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444445555555555544443
No 418
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=68.08 E-value=3.2e+02 Score=34.19 Aligned_cols=108 Identities=10% Similarity=0.062 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHH
Q 004340 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIM---SYLGTAMH 647 (760)
Q Consensus 571 ~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~---~~la~~~~ 647 (760)
|...|..+.....+++|.-.|+.+=++ -.-..+|...|+|.+|+....+ ..+....+. ..|+.-+.
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~q---l~~~~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQ---LSEGKDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHh---hcCCHHHHHHHHHHHHHHHH
Confidence 344455555555555555555543221 1112234445555555554433 233333333 56677777
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 648 ALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEEL 696 (760)
Q Consensus 648 ~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 696 (760)
..+++-+|-++..+.+.. |.. .-.+|.+...|++|+.....+
T Consensus 1011 e~~kh~eAa~il~e~~sd-~~~------av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD-PEE------AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HcccchhHHHHHHHHhcC-HHH------HHHHHhhHhHHHHHHHHHHhc
Confidence 888888887777766542 111 123344555667776665544
No 419
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.29 E-value=31 Score=37.42 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHH
Q 004340 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDAR---HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP--------HSSV 637 (760)
Q Consensus 569 ~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p--------~~~~ 637 (760)
.++..+|..|...|+++.|++.|-++-..... -...|.++..+-...|+|.....+..++...-. -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 34556777777777777777777775443222 245566666677777777776666666654310 0123
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAI 663 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al 663 (760)
+.+..|.+...+++|..|.++|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55666777777778888888776654
No 420
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.18 E-value=9.8 Score=27.49 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 673 MYQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
.+.+|.+|..+|+++.|.+.+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35789999999999999999999985
No 421
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.12 E-value=2.3e+02 Score=35.21 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=56.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcC
Q 004340 612 YLRQEKFEFSEHHFRMAFQISPHS----SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQKANILLSLE 684 (760)
Q Consensus 612 ~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~---~~~~~~la~~~~~~g 684 (760)
+..-+-.+.+.....+|++.-|++ +..+..+-.-+..+|.+-+|...+ -.+|+. ..++..+..+++..|
T Consensus 993 le~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg 1068 (1480)
T KOG4521|consen 993 LEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECG 1068 (1480)
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhcc
Confidence 344455555556555666553333 223344444455566666665433 223432 234445556666666
Q ss_pred CHHH------------HHH-HHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcC
Q 004340 685 KFDE------------ALE-VLEELKEYAPR-ESGVYALMGKIYKRRNMHEKAML-HFGLALDLK 734 (760)
Q Consensus 685 ~~~e------------A~~-~l~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~-~~~~al~l~ 734 (760)
+.+. -.. +.+.+-...|- ....|..|--.+...+++.+|-. .|+.+..+.
T Consensus 1069 ~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1069 ELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred chHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 5432 222 23333333332 23344444455566677766543 455555543
No 422
>PRK12798 chemotaxis protein; Reviewed
Probab=67.09 E-value=2e+02 Score=31.62 Aligned_cols=206 Identities=12% Similarity=-0.059 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQL-NPRFAYGHTLC-GHEYVALEDFENGIRSYQSALRVDARHY---NSWYG 607 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~-~p~~~~a~~~l-a~~~~~~g~~e~A~~~~~~al~~~p~~~---~a~~~ 607 (760)
+.+.-..-|..-+..|+-.+|.+.+...... -|...-.+..| .-..+...+..+|+..|+.+--..|... .++..
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR 190 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR 190 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 3445555666667778888887777654322 12222233333 3334456778888888888877777642 23334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHh-CCC-ChHHHHHHHHHHHH
Q 004340 608 LGMVYLRQEKFEFSEHHFRMAFQISPHSSVIM---SYLGTAMHALKRSGEAIEMMEKAILA-DKK-NPLPMYQKANILLS 682 (760)
Q Consensus 608 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~---~~la~~~~~~g~~~eAl~~l~~al~~-~p~-~~~~~~~la~~~~~ 682 (760)
-..+....|+.+++..+-.+.+..+..++.+. -.....+.+.++-.. ...+...+.. +|. ...+|..+++.-.-
T Consensus 191 si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~Ali 269 (421)
T PRK12798 191 SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPERQRELYLRIARAALI 269 (421)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 44455778888888888777777766665442 223333333332221 1224444443 333 24677778888888
Q ss_pred cCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCChHH
Q 004340 683 LEKFDEALEVLEELKEYAPR----ESGVYALMGKIYKRRNMHEKAMLHFGLAL--DLKPSATD 739 (760)
Q Consensus 683 ~g~~~eA~~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al--~l~p~~~~ 739 (760)
.|+.+-|.-.-++++.+... ...+.+..+....-..++++|++.+...- ++.|.+..
T Consensus 270 ~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~ 332 (421)
T PRK12798 270 DGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRA 332 (421)
T ss_pred cCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHH
Confidence 88888888888888887532 23334444444444566777777666543 24454443
No 423
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=67.00 E-value=14 Score=23.72 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH
Q 004340 618 FEFSEHHFRMAFQISPHSSVIMSY 641 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~~~~~~~ 641 (760)
.+.|...|++++...|.++.+|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 334444444444444444444433
No 424
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.70 E-value=90 Score=36.59 Aligned_cols=175 Identities=13% Similarity=0.041 Sum_probs=85.3
Q ss_pred HHHHHHHhccccc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHH--------cc-
Q 004340 449 KDALDVYLKLPHK--HYNTGWVLSQVGKAYFEVVDYLEAERAFTLAR---RASPYSLEGMDIYSTVLYH--------LK- 514 (760)
Q Consensus 449 ~eAi~~l~~~~~~--~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~la~~l~~--------l~- 514 (760)
.+++...+.+.+. .|+...+-+....+||.+|+|++|+.+--.+- ..++.........+.+.-. .+
T Consensus 40 sd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~ 119 (929)
T KOG2062|consen 40 SDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKN 119 (929)
T ss_pred hhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444332 34455666778899999999999999977663 2333322211111111111 11
Q ss_pred -C-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHHHcCCHH
Q 004340 515 -E-----DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL-NP--RFAYGHTLCGHEYVALEDFE 585 (760)
Q Consensus 515 -~-----~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~-~p--~~~~a~~~la~~~~~~g~~e 585 (760)
. ..+...+.++++...-.+.+.|..+|..+... .+..+++|+-. +. +.......+...... +-+
T Consensus 120 ~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~-----rld~ie~Ail~~d~~~~~~~yll~l~~s~v~--~~e 192 (929)
T KOG2062|consen 120 PEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETR-----RLDIIEEAILKSDSVIGNLTYLLELLISLVN--NRE 192 (929)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhh-----hHHHHHHHhccccccchHHHHHHHHHHHHHh--hHH
Confidence 1 34566677777777766677777777665422 23344443221 11 111112222222222 111
Q ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 586 NGIRSYQSALRVDA-RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ 630 (760)
Q Consensus 586 ~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~l~~al~ 630 (760)
=-.+.++..++..- .-..-++.+..||..+.+.+.+...+++.++
T Consensus 193 fR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 193 FRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred HHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 12222333332211 1111244556666666777777777766665
No 425
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.51 E-value=21 Score=41.34 Aligned_cols=125 Identities=14% Similarity=0.175 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHH---HcCCHHHHHHHHHHHHHhC-CCC
Q 004340 532 LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA------YGHTLCGHEYV---ALEDFENGIRSYQSALRVD-ARH 601 (760)
Q Consensus 532 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~------~a~~~la~~~~---~~g~~e~A~~~~~~al~~~-p~~ 601 (760)
.+++....+-..|....+|+.-+++.+..-.+ |+.. ...+..+.++- .-|+-++|+...-.+++.. +-.
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 46777788888888888998888877766554 3211 11112222222 2467778887777777653 334
Q ss_pred HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHH
Q 004340 602 YNSWYGLGMVYLR---------QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK-RSGEAIEM 658 (760)
Q Consensus 602 ~~a~~~la~~~~~---------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~eAl~~ 658 (760)
++.+..-|.+|-. .+..+.|+++|+++++..|.... -.+++.++...| .++...++
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens~El 343 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENSLEL 343 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccchHHH
Confidence 5556666766643 24556777788888777775322 234555555555 34443333
No 426
>PF13041 PPR_2: PPR repeat family
Probab=65.20 E-value=29 Score=25.31 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQL 563 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~ 563 (760)
..|..+-..|.+.|++++|.++|+++.+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34444555555555555555555555543
No 427
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=65.09 E-value=93 Score=33.97 Aligned_cols=56 Identities=11% Similarity=-0.113 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccccCCC-----CHH--HHHHHHHHHHHccCHHHHHHHHHH
Q 004340 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYN-----TGW--VLSQVGKAYFEVVDYLEAERAFTL 491 (760)
Q Consensus 436 l~~a~~~~~~g~~~eAi~~l~~~~~~~p~-----~~~--~l~~la~~~~~~g~~~~A~~~~~~ 491 (760)
...+..++..++|..|..+|..+....+. ... .....|..++..-++++|.+.+++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34666889999999999999998766431 122 334445566788999999999986
No 428
>PRK09687 putative lyase; Provisional
Probab=64.90 E-value=1.8e+02 Score=30.35 Aligned_cols=202 Identities=9% Similarity=-0.045 Sum_probs=117.3
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCCCHH
Q 004340 533 APQSWCAMGNCYSLQKDH----ETALKNFQRAVQLNPRFAYGHTLCGHEYVALED-----FENGIRSYQSALRVDARHYN 603 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~----~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~-----~e~A~~~~~~al~~~p~~~~ 603 (760)
++.....-+.++...|+. .+++..+..++..+++ +.+....+.++...+. ...+...+..++. ++ +..
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d-~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~-D~-~~~ 143 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKS-ACVRASAINATGHRCKKNPLYSPKIVEQSQITAF-DK-STN 143 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCC-HHHHHHHHHHHhcccccccccchHHHHHHHHHhh-CC-CHH
Confidence 344444445555555542 4566666665444444 3333333333222221 1223333333322 22 466
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 004340 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK-RSGEAIEMMEKAILADKKNPLPMYQKANILLS 682 (760)
Q Consensus 604 a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~ 682 (760)
+.+..+..+...++ ++|+..+..+++ + .+..+....+..+...+ ...++...+..++. ..+..+...-+..+.+
T Consensus 144 VR~~a~~aLg~~~~-~~ai~~L~~~L~-d-~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 144 VRFAVAFALSVIND-EAAIPLLINLLK-D-PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHHhccCC-HHHHHHHHHHhc-C-CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHHHHHHc
Confidence 66666777766665 578888888775 2 33445544455544443 24577777777773 3356666667777777
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004340 683 LEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIE 748 (760)
Q Consensus 683 ~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~ 748 (760)
.|+ ..|+..+-+.++... +....+.++...|.. +|+..+.++++.+|+.........++.
T Consensus 219 ~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 219 RKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred cCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 777 678888888776322 455677777788885 799999999988886554444444443
No 429
>PF12854 PPR_1: PPR repeat
Probab=64.86 E-value=15 Score=24.66 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 004340 636 SVIMSYLGTAMHALKRSGEAIEMMEK 661 (760)
Q Consensus 636 ~~~~~~la~~~~~~g~~~eAl~~l~~ 661 (760)
...|..+...+.+.|+.++|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33444455555555555555555443
No 430
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.71 E-value=44 Score=33.24 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=44.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004340 610 MVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669 (760)
Q Consensus 610 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~ 669 (760)
..+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-++.|++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 345666777777777777777777777777777777777788888877777777777765
No 431
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=64.67 E-value=2.3e+02 Score=33.39 Aligned_cols=21 Identities=19% Similarity=0.002 Sum_probs=16.5
Q ss_pred HHHHHHHhcCChHHHHHHHhc
Q 004340 437 GEGYRMSCMYRCKDALDVYLK 457 (760)
Q Consensus 437 ~~a~~~~~~g~~~eAi~~l~~ 457 (760)
...|.+++.|++++|.++...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~ 136 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANE 136 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 456788999999999999943
No 432
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.34 E-value=17 Score=23.21 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=17.7
Q ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 004340 480 VDYLEAERAFTLARRASPYSLEGMDIYS 507 (760)
Q Consensus 480 g~~~~A~~~~~~al~~~p~~~~~~~~la 507 (760)
|+++.|..+|++++...|.....|..++
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3556666777777776666666555554
No 433
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=64.11 E-value=72 Score=31.44 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC
Q 004340 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM-VYLRQEKFEFSEHHFRMAFQISP 633 (760)
Q Consensus 569 ~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~-~~~~~g~~~~A~~~l~~al~~~p 633 (760)
.....+-+.....|+++.|-++|--.+...+-+......+|. ++...+.-....++++......|
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 445566677778888999888888888877666665556654 44444444444455555544443
No 434
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.10 E-value=1.9e+02 Score=30.10 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=56.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHH
Q 004340 522 LAQELITTDRLAPQSWCAMGNCYSLQ--KDHETALKNFQRAVQLNPRFAYGHTLCGHEY------VALEDFENGIRSYQS 593 (760)
Q Consensus 522 ~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~kal~~~p~~~~a~~~la~~~------~~~g~~e~A~~~~~~ 593 (760)
++..+++.+|.+-..|...-.++... ..+..-+.+.++.+..|+.+...|...-.+. ..-.++....++-..
T Consensus 96 ~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~ 175 (328)
T COG5536 96 FLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTS 175 (328)
T ss_pred HHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHH
Confidence 34455555555555555444444333 3445555555555555555554443222221 222233333444445
Q ss_pred HHHhCCCCHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 594 ALRVDARHYNSWYGL---GMVYLRQEK------FEFSEHHFRMAFQISPHSSVIMSYL 642 (760)
Q Consensus 594 al~~~p~~~~a~~~l---a~~~~~~g~------~~~A~~~l~~al~~~p~~~~~~~~l 642 (760)
++..++.+..+|... .......|+ +++-+++.-.++-.+|++..+|..+
T Consensus 176 ~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 176 LIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred HHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence 555555555555443 222222332 3344455555555566665555443
No 435
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=63.72 E-value=2.6e+02 Score=32.89 Aligned_cols=86 Identities=9% Similarity=-0.042 Sum_probs=32.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH--HHHHHHH---HHhc
Q 004340 473 GKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQS--WCAMGNC---YSLQ 547 (760)
Q Consensus 473 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~--~~~la~~---~~~~ 547 (760)
-.+++-.|+|+.|++++-+ .+.+...-..+|.++...|-..-....-..++..++.++.. +..+-.. .+..
T Consensus 265 f~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 4557778889999888876 22222222334444444443222222224444444443221 1111122 2345
Q ss_pred CCHHHHHHHHHHHHH
Q 004340 548 KDHETALKNFQRAVQ 562 (760)
Q Consensus 548 g~~~~A~~~~~kal~ 562 (760)
.+..+|+++|--+-.
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 677888887765433
No 436
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.62 E-value=3.2e+02 Score=32.34 Aligned_cols=286 Identities=13% Similarity=0.078 Sum_probs=164.1
Q ss_pred HHhcCChHHHHHHHhcccccC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHcc
Q 004340 442 MSCMYRCKDALDVYLKLPHKH------YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGM-DIYSTVLYHLK 514 (760)
Q Consensus 442 ~~~~g~~~eAi~~l~~~~~~~------p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~l~~l~ 514 (760)
.++.|+..+|.+++.-.+... ...+-+++.+|.++..-|+- ..+++...++......-.+ ..++.-+..+|
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mG 444 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMG 444 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcc
Confidence 367899999999999866552 23566888999888777765 8888888887655322111 12233333444
Q ss_pred C-HHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHH
Q 004340 515 E-DMKLSYLAQELITTDRLAP--QSWCAMGNCYSLQKDHETALK-NFQRAVQLNPRFAYGH--TLCGHEYVALEDFENGI 588 (760)
Q Consensus 515 ~-~~~a~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~-~~~kal~~~p~~~~a~--~~la~~~~~~g~~e~A~ 588 (760)
- ..+....+...+..|.--. .+-+.+|.+.......+ |++ .+.-+.+. .+..+. ...|..+...|+-++|-
T Consensus 445 Sa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~e-aiedm~~Ya~ET--QHeki~RGl~vGiaL~~ygrqe~Ad 521 (929)
T KOG2062|consen 445 SANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQE-AIEDMLTYAQET--QHEKIIRGLAVGIALVVYGRQEDAD 521 (929)
T ss_pred cccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHH-HHHHHHHHhhhh--hHHHHHHHHHHhHHHHHhhhhhhhH
Confidence 3 2233333344444433211 23455666655555433 333 33333322 223333 34566777788888998
Q ss_pred HHHHHHHHhC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004340 589 RSYQSALRVD-AR-HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV--IMSYLGTAMHALKRSGEAIEMMEKAIL 664 (760)
Q Consensus 589 ~~~~~al~~~-p~-~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~--~~~~la~~~~~~g~~~eAl~~l~~al~ 664 (760)
.+.++++.-. |- .....+.+|..|...|+...-...+.-++.--.++.. +...+|.++ ..+++....+..-..+
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl--~~dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVL--FRDPEQLPSTVSLLSE 599 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeE--ecChhhchHHHHHHhh
Confidence 8888887643 21 2345678888999998866555554444433223333 233344443 3566666666554444
Q ss_pred hCCCChHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHh
Q 004340 665 ADKKNPLP----MYQKANILLSLEKFDEALEVLEELKEYAPRE---SGVYALMGKIYKRRNM-----HEKAMLHFGLALD 732 (760)
Q Consensus 665 ~~p~~~~~----~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~-----~~~A~~~~~~al~ 732 (760)
.. ++.+ -..+|.++...|. .+|+.+++.+.. +|.+ ..+...+|.+..++.+ +..-++.|.+.+.
T Consensus 600 s~--N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 600 SY--NPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred hc--ChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhh
Confidence 32 3333 3446666777776 789999988776 5543 2456667777766543 4455566666665
Q ss_pred cCCChH
Q 004340 733 LKPSAT 738 (760)
Q Consensus 733 l~p~~~ 738 (760)
-..++.
T Consensus 676 dKhEd~ 681 (929)
T KOG2062|consen 676 DKHEDG 681 (929)
T ss_pred hhhhHH
Confidence 444444
No 437
>PF12854 PPR_1: PPR repeat
Probab=62.43 E-value=15 Score=24.60 Aligned_cols=23 Identities=4% Similarity=0.062 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 004340 570 GHTLCGHEYVALEDFENGIRSYQ 592 (760)
Q Consensus 570 a~~~la~~~~~~g~~e~A~~~~~ 592 (760)
.|..+...|.+.|+.++|.++|+
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444444444444444443
No 438
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.35 E-value=2.9e+02 Score=38.69 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-HHH---HHHHHHHHHcC-CHHHHHHHHHHHH-HHCC--CCHHHHHH
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKKNP-LPM---YQKANILLSLE-KFDEALEVLEELK-EYAP--RESGVYAL 709 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~-~~~---~~la~~~~~~g-~~~eA~~~l~~al-~~~p--~~~~~~~~ 709 (760)
+.+..|.+..+.|-++.++..+.+...+..-.. ++. ..-+.+|.... ....++++.+..- ...+ ..++.+..
T Consensus 2738 ~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~l 2817 (3550)
T KOG0889|consen 2738 AINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTL 2817 (3550)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHh
Confidence 344556666666667766666666554432111 111 12233333332 3333333333221 1111 12556777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 004340 710 MGKIYKRRNMHEKAMLHFGLALDLKPSATDVAT 742 (760)
Q Consensus 710 la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 742 (760)
.|..+.++|+.++|-..|..|++++-....++.
T Consensus 2818 kG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~ 2850 (3550)
T KOG0889|consen 2818 KGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWA 2850 (3550)
T ss_pred hhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHH
Confidence 788888888888888888888887766555444
No 439
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=61.80 E-value=2.2e+02 Score=30.23 Aligned_cols=99 Identities=12% Similarity=0.116 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNP------RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNS 604 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p------~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~---~~a 604 (760)
.+++..+|..|++.||-+.|.+.+.+.....- +-.-....+|..|....-..+-++-.+..++...+- -..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 57899999999999999999998887765421 122334556777766555555555545555443220 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004340 605 WYGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (760)
Q Consensus 605 ~~~la~~~~~~g~~~~A~~~l~~al~~~ 632 (760)
-...|...+...++.+|...|-.++...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 2234555666778889988888776543
No 440
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.33 E-value=3.6e+02 Score=32.55 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=39.9
Q ss_pred HHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004340 442 MSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLAR 493 (760)
Q Consensus 442 ~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al 493 (760)
++..|+|++|+++...-++ .--.++...|..++..++|..|.++|-+..
T Consensus 368 yLd~g~y~kAL~~ar~~p~---~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 368 YLDKGEFDKALEIARTRPD---ALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHhcchHHHHHHhccCCHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 4789999999999876521 123688899999999999999999998773
No 441
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=60.03 E-value=1.4e+02 Score=27.21 Aligned_cols=29 Identities=7% Similarity=-0.250 Sum_probs=13.4
Q ss_pred HccCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 004340 478 EVVDYLEAERAFTLARRASPYSLEGMDIY 506 (760)
Q Consensus 478 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l 506 (760)
..+.....+.+++.++..++.+......+
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~l 47 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKL 47 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHH
Confidence 34455555555555555444333333333
No 442
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=59.85 E-value=4.4e+02 Score=33.03 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhc
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLK 457 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~ 457 (760)
..|.....++..++|.+|.+..++
T Consensus 679 lVLa~vr~~l~~~~y~~AF~~~Rk 702 (1265)
T KOG1920|consen 679 LVLAKVRTLLDRLRYKEAFEVMRK 702 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777788888887776
No 443
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=59.46 E-value=14 Score=37.13 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCChHH
Q 004340 704 SGVYALMGKIYK---------RRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 704 ~~~~~~la~~~~---------~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
+..|..+|..+. ..++...|+.++++|++++|+...
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 345666777763 456888999999999999999764
No 444
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.87 E-value=38 Score=31.43 Aligned_cols=48 Identities=19% Similarity=0.102 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Q 004340 468 VLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE 515 (760)
Q Consensus 468 ~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~ 515 (760)
.....++..+..|+|.-|.++.+.++..+|++.++....+.++..++.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 344456666667777777777777777777777766666666665543
No 445
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.00 E-value=1e+02 Score=35.28 Aligned_cols=45 Identities=11% Similarity=-0.257 Sum_probs=20.2
Q ss_pred HHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004340 477 FEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQEL 526 (760)
Q Consensus 477 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~ 526 (760)
.+.|+++.|.++..++ ++..-|..++.+....++...|.+++.++
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3444555444443332 23334444555555555554444444443
No 446
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.82 E-value=2.5e+02 Score=29.35 Aligned_cols=99 Identities=8% Similarity=0.020 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNP------RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNS 604 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p------~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~---~~a 604 (760)
.++|..+|..|.+.++.+.+.+...+.+...- +-.-....+|.+|....-.++.++.....++...+- -..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 57889999999999999999888877765421 112233456777776666677777777777654321 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004340 605 WYGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (760)
Q Consensus 605 ~~~la~~~~~~g~~~~A~~~l~~al~~~ 632 (760)
-...|...+...++.+|...+...+...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2234555666678888888887776544
No 447
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=56.59 E-value=31 Score=40.50 Aligned_cols=106 Identities=16% Similarity=0.239 Sum_probs=61.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH--cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 004340 608 LGMVYLRQEKFEFSEHHFRMAFQISPHS----SVIMSYLGTAMHA--LKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (760)
Q Consensus 608 la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~--~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~ 681 (760)
-+..++..+++..|.--|..++.+-|.+ .....+.+.++.. .|+|..++.-..-++...|....+++..+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 3555666666666666666666665532 2233344444433 346666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 004340 682 SLEKFDEALEVLEELKEYAPRESGVYALMGKI 713 (760)
Q Consensus 682 ~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~ 713 (760)
..++++-|++.+.-.....|....+.....+.
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~eif~el 170 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL 170 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 66666666666555555566654444333333
No 448
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.41 E-value=1.4e+02 Score=26.24 Aligned_cols=80 Identities=13% Similarity=-0.100 Sum_probs=51.4
Q ss_pred HHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Q 004340 442 MSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSY 521 (760)
Q Consensus 442 ~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~ 521 (760)
.-.....+||..+.+-+.........+..-....+..+|+|++|+ .+...-..++....++.+-+++|-..++..
T Consensus 16 atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL-----l~~~~~~~pdL~p~~AL~a~klGL~~~~e~ 90 (116)
T PF09477_consen 16 ATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL-----LLPQCHCYPDLEPWAALCAWKLGLASALES 90 (116)
T ss_dssp HHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH-----HHHTTS--GGGHHHHHHHHHHCT-HHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH-----HhcccCCCccHHHHHHHHHHhhccHHHHHH
Confidence 344556788888887766555555566677778889999999992 122334455566667777888888777777
Q ss_pred HHHHH
Q 004340 522 LAQEL 526 (760)
Q Consensus 522 ~~~~~ 526 (760)
.+.++
T Consensus 91 ~l~rl 95 (116)
T PF09477_consen 91 RLTRL 95 (116)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 449
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=55.58 E-value=2.5e+02 Score=28.78 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 004340 538 CAMGNCYSLQKDHETALKNFQRAVQL-NP--RFAYGHTLCGHEYVA-LEDFENGIRSYQS 593 (760)
Q Consensus 538 ~~la~~~~~~g~~~~A~~~~~kal~~-~p--~~~~a~~~la~~~~~-~g~~e~A~~~~~~ 593 (760)
..+|.+..+.++|++.+.+.+++++. ++ -..+-...+..+|-. .|....+...+..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 34556666666777777776666665 32 233444445544433 3444444444443
No 450
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.50 E-value=2.8e+02 Score=29.03 Aligned_cols=96 Identities=14% Similarity=0.036 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---HH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SV---IMSYLGTAMHALKRSGEAIEMMEKAILADKKNP---LP 672 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~---~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~---~~ 672 (760)
.++|.++|..|.+.++.+.+.+.+.+.+...-.. .. ....+|.+|..+.-.++-++.....++..-+.. ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 3455666666666666666655555544332110 11 122334444433334444444444444433211 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 673 MYQKANILLSLEKFDEALEVLEELK 697 (760)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~l~~al 697 (760)
....|...+...++.+|..++-..+
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 2223444444555555555555444
No 451
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=54.05 E-value=63 Score=32.23 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=55.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 004340 643 GTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (760)
Q Consensus 643 a~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 703 (760)
..-+.+.+...+|+...+.-++-.|.+......+-.+|.-.|+|++|...++-+-++.|++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4567788899999999999999999999999999999999999999999999999998864
No 452
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=53.27 E-value=54 Score=34.38 Aligned_cols=141 Identities=21% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccchhHHHHH-------------HhhhhcCCCchh----hHHHHHHH-hhcCCHHHHHHHhccCCCcch
Q 004340 5 LTDCVQNSLRYFMYRNAIFLC-------------ERLCAEFPSEVN----LQLLATCY-LQNNQAYAAYNILKGTQMALS 66 (760)
Q Consensus 5 l~~~i~~~l~~~~~~~A~fla-------------erl~a~~~~~~~----~~llA~~~-~~~~~~~~a~~~l~~~~~~~~ 66 (760)
..++++.||++++|..|+++| +=+-.+.+.... ..+|..+| .-+|+...+..-+.....
T Consensus 11 ~~~Av~~al~~~~wa~ALlLAs~~g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~l~~~~~--- 87 (284)
T PF12931_consen 11 REEAVELALDNGLWAHALLLASSLGPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDELVPNSA--- 87 (284)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHHHHH------
T ss_pred HHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHHhccccc---
Q ss_pred hHHHHHHHHhcCChhHHHHhhCCCCCCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHH---HhhCCcchHHHHHHHh
Q 004340 67 RYLFAVACYQMDLLSEAEAALSPVNEPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMA---LSIDPLLWAAYEELCM 143 (760)
Q Consensus 67 ~yl~a~c~~~l~~~~ea~~~l~~~~~~~~~~p~~a~~~~llg~i~~~~~~~~~A~~~~~~A---L~~np~~w~af~~Lc~ 143 (760)
-.-..--.+++.|+|...++.. ...|+...++.-||......|+...|--||.-| +...|..+..=..++-
T Consensus 88 -~~~~~~~~~~~~Wre~lA~il~-----N~~~~~~~~l~~LGd~L~~~g~~~aA~iCYllag~~~~~~~~~~~~~~~~~l 161 (284)
T PF12931_consen 88 -APPLEGEWDLDNWRETLAIILS-----NRTPEDSQALCALGDRLWQRGRVEAAHICYLLAGNPLSPIPWLDDSNSRFSL 161 (284)
T ss_dssp ---HHHHHHHHHSHHHHHHHHHH-----TS---SS-TT--HHHHHHHTT-HHHHHHHHHHTT---SSSBSSTTS--B--S
T ss_pred -cccccccchhcCHHHHHHHHHh-----CCCcccHHHHHHHHHHHHhCCCcchhHHHHhHcCCccCCcccccccchhhhh
Q ss_pred cC--CccchhHHh
Q 004340 144 LG--AAEEATAVF 154 (760)
Q Consensus 144 ~g--~~~~~~~~f 154 (760)
+| ...++..+.
T Consensus 162 lg~~~~~~~~~~~ 174 (284)
T PF12931_consen 162 LGASSFASPEAII 174 (284)
T ss_dssp SS---TTSHHHHH
T ss_pred ccCCccccHHHHH
No 453
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=53.27 E-value=4.4 Score=46.63 Aligned_cols=87 Identities=20% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCHHHHHHHhccCC--------CcchhHHHHHHHHhcCChhHHHHhhCCCCCCCccCcc--hHHHHHHHH
Q 004340 39 QLLATCYLQNNQAYAAYNILKGTQ--------MALSRYLFAVACYQMDLLSEAEAALSPVNEPSAEIPN--GAAGHYLMG 108 (760)
Q Consensus 39 ~llA~~~~~~~~~~~a~~~l~~~~--------~~~~~yl~a~c~~~l~~~~ea~~~l~~~~~~~~~~p~--~a~~~~llg 108 (760)
++-|..|+..|++..|..+|.... ...-++|.|++.+..+++.+|...|.... ...+|. ....|-+++
T Consensus 28 L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~--~~~l~~~~~~~~~~l~A 105 (536)
T PF04348_consen 28 LLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQD--LWQLPPEQQARYHQLRA 105 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCC--cccCCHHHHHHHHHHHH
Confidence 333899999999999999998762 34677889999999999999999996321 122332 244788899
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 004340 109 LIYRYTDRRKNAIHHYKMA 127 (760)
Q Consensus 109 ~i~~~~~~~~~A~~~~~~A 127 (760)
.+|...|+.-.|+..+...
T Consensus 106 ~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 106 QAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp -------------------
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 9999999999988887663
No 454
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=52.24 E-value=4.9 Score=37.14 Aligned_cols=82 Identities=16% Similarity=0.025 Sum_probs=57.1
Q ss_pred HHHHHHhhccchhHHHHHHhhhhcCCC-ch-hhHHHHHHHhhcCCHHHHHHHhccCCCcchhHHHHHHHHhcCChhHHHH
Q 004340 8 CVQNSLRYFMYRNAIFLCERLCAEFPS-EV-NLQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSEAEA 85 (760)
Q Consensus 8 ~i~~~l~~~~~~~A~flaerl~a~~~~-~~-~~~llA~~~~~~~~~~~a~~~l~~~~~~~~~yl~a~c~~~l~~~~ea~~ 85 (760)
+|....+.+....++-+=|.+....+. +. -.-+|+.||...+++.+...+++...+-....++..| .+.+.+++|..
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c-~~~~l~~~a~~ 91 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLC-EKHGLYEEAVY 91 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHH-HTTTSHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHH-HhcchHHHHHH
Confidence 455556667777777677777776654 23 3467889999998889999999977666665555544 77788888887
Q ss_pred hhCCC
Q 004340 86 ALSPV 90 (760)
Q Consensus 86 ~l~~~ 90 (760)
.+...
T Consensus 92 Ly~~~ 96 (143)
T PF00637_consen 92 LYSKL 96 (143)
T ss_dssp HHHCC
T ss_pred HHHHc
Confidence 77643
No 455
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=52.09 E-value=46 Score=30.85 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Q 004340 672 PMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNM 719 (760)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 719 (760)
.....+...+..|++.-|.++++.++..+|++..+...++.++.++|.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666666666666666666666655543
No 456
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=51.84 E-value=3.5e+02 Score=29.41 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 582 EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRM 627 (760)
Q Consensus 582 g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~ 627 (760)
+..-+|+.+++.++..+|.++.....+..+|...|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3455677777888888888888888888888888888888887764
No 457
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.22 E-value=3.1e+02 Score=28.58 Aligned_cols=146 Identities=12% Similarity=0.046 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHH
Q 004340 550 HETALKNFQRAVQLNPRFAYGHTLCGHEYVAL--EDFENGIRSYQSALRVDARHYNSWYGLGMVY------LRQEKFEFS 621 (760)
Q Consensus 550 ~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~--g~~e~A~~~~~~al~~~p~~~~a~~~la~~~------~~~g~~~~A 621 (760)
.+.-+.++..+++.+|.....|...-.++... ..+..-+...++.+..|+.+...|...-.+. ..-.++..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 35566778888999999988888776666554 6688888899999999999988776554444 333344555
Q ss_pred HHHHHHHHHhCCCCHHHHHHH---HHHHHHcCC------hHHHHHHHHHHHHhCCCChHHHHHHHHHHH----HcCCHHH
Q 004340 622 EHHFRMAFQISPHSSVIMSYL---GTAMHALKR------SGEAIEMMEKAILADKKNPLPMYQKANILL----SLEKFDE 688 (760)
Q Consensus 622 ~~~l~~al~~~p~~~~~~~~l---a~~~~~~g~------~~eAl~~l~~al~~~p~~~~~~~~la~~~~----~~g~~~e 688 (760)
.++-..++..++.+..+|... -...+..|+ +++-+++.-.++-.+|++..+|..+-.+.. ..-.+.+
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~~~~e 249 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVMIGE 249 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHHHHHH
Confidence 666677788899998888766 333444554 455667777777888998888766554432 2234555
Q ss_pred HHHHHHH
Q 004340 689 ALEVLEE 695 (760)
Q Consensus 689 A~~~l~~ 695 (760)
-++.+.+
T Consensus 250 ~v~~L~k 256 (328)
T COG5536 250 KVEDLGK 256 (328)
T ss_pred HHHHHHh
Confidence 5565544
No 458
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.06 E-value=74 Score=31.06 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 688 EALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 688 eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
..++..++.+...| ++.++..++.++...|+.++|.....++..+.|.+
T Consensus 129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 129 AYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 34445555555566 46677777777777777777777777777777733
No 459
>PF06287 DUF1039: Protein of unknown function (DUF1039); InterPro: IPR010437 This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic Escherichia coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterised as part of the apparatus or as an effector protein.
Probab=50.95 E-value=37 Score=26.81 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=44.9
Q ss_pred HhhccchhHHHHHHhhhhcCCCchh-hHHHHHHHhhcCCHHHHHHHhccCCCcchhHH
Q 004340 13 LRYFMYRNAIFLCERLCAEFPSEVN-LQLLATCYLQNNQAYAAYNILKGTQMALSRYL 69 (760)
Q Consensus 13 l~~~~~~~A~flaerl~a~~~~~~~-~~llA~~~~~~~~~~~a~~~l~~~~~~~~~yl 69 (760)
.||++++.|.-+-.-|=-..|+++. +..-|.+||-.|+..+|...|+...++.|.-|
T Consensus 4 vNHgL~~ea~aIL~alP~Li~D~~~r~~c~alllfGL~~~~~Al~~L~~~~~eeA~~L 61 (66)
T PF06287_consen 4 VNHGLLKEARAILNALPQLIPDEEDRAVCEALLLFGLGEQAAALQLLADSDSEEAQAL 61 (66)
T ss_pred cccccHHHHHHHHHhchhhcCCHhHHHHHHHHHHHHcCChHHHHHHHhCCChHHHHHH
Confidence 4677778777777777777788664 56669999999999999999999887766544
No 460
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=50.38 E-value=2.8e+02 Score=30.33 Aligned_cols=54 Identities=7% Similarity=-0.154 Sum_probs=32.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHH--HHHHHHcCCHHHHHHHHHH
Q 004340 540 MGNCYSLQKDHETALKNFQRAVQLNPR-----FAYGHTLC--GHEYVALEDFENGIRSYQS 593 (760)
Q Consensus 540 la~~~~~~g~~~~A~~~~~kal~~~p~-----~~~a~~~l--a~~~~~~g~~e~A~~~~~~ 593 (760)
.+..++..++|..|...|..+....+. ....+..+ |..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 445667777788888877777765431 12233333 3344556677788877775
No 461
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=50.02 E-value=1.4e+02 Score=24.37 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHh
Q 004340 435 ILGEGYRMSCMYRCKDALDVYL 456 (760)
Q Consensus 435 ~l~~a~~~~~~g~~~eAi~~l~ 456 (760)
.+.+|..+-..|++++|+.+|+
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~ 30 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYK 30 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 3344555555555555555443
No 462
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=50.01 E-value=3.1e+02 Score=34.05 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhc
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLK 457 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~ 457 (760)
..|.....++..++|.+|..+.++
T Consensus 696 LVL~~ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 696 LVLAGIRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHH
Confidence 345566677889999999999987
No 463
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=49.20 E-value=3.5e+02 Score=28.70 Aligned_cols=227 Identities=8% Similarity=-0.052 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----
Q 004340 420 SRIMTGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA---- 495 (760)
Q Consensus 420 ~k~~~~~~~l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~---- 495 (760)
+.+.+....++.++..=.....+-...+-..-+..+.+--...|+...+++..|...++.|+|..|-.++-....+
T Consensus 83 keLe~ev~piv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~ 162 (432)
T KOG2758|consen 83 KELEEEVAPIVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDP 162 (432)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCc
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------------HHHHHHHHHHHhcCCHHHHHHHHH----
Q 004340 496 SPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP-------------QSWCAMGNCYSLQKDHETALKNFQ---- 558 (760)
Q Consensus 496 ~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~-------------~~~~~la~~~~~~g~~~~A~~~~~---- 558 (760)
+++...++...-..-....+++.|.+-+.++-+.-...+ -.+..+-..+-.-+--+.-++.|-
T Consensus 163 d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~ 242 (432)
T KOG2758|consen 163 DRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPP 242 (432)
T ss_pred chhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHH
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004340 559 RAVQLNPRFAYGHTLCGHEYVAL-EDFENGIRSYQSALRVDA-RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS 636 (760)
Q Consensus 559 kal~~~p~~~~a~~~la~~~~~~-g~~e~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 636 (760)
-.-.+....+..+..++.+.... .....+++-+-+.++... ...+.......|++-.-+++.|...++++-+.-.++.
T Consensus 243 YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDf 322 (432)
T KOG2758|consen 243 YLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDF 322 (432)
T ss_pred HHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcch
Q ss_pred HHHHHHHHHH
Q 004340 637 VIMSYLGTAM 646 (760)
Q Consensus 637 ~~~~~la~~~ 646 (760)
.+...++...
T Consensus 323 FLva~l~~F~ 332 (432)
T KOG2758|consen 323 FLVALLDEFL 332 (432)
T ss_pred hHHHHHHHHH
No 464
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=49.18 E-value=26 Score=22.09 Aligned_cols=18 Identities=17% Similarity=0.551 Sum_probs=7.0
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 004340 576 HEYVALEDFENGIRSYQS 593 (760)
Q Consensus 576 ~~~~~~g~~e~A~~~~~~ 593 (760)
..|.+.|++++|.+.|++
T Consensus 8 ~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 8 SGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHccchHHHHHHHHHH
Confidence 333333333333333333
No 465
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=48.84 E-value=28 Score=21.99 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004340 536 SWCAMGNCYSLQKDHETALKNFQRAVQL 563 (760)
Q Consensus 536 ~~~~la~~~~~~g~~~~A~~~~~kal~~ 563 (760)
+|..+-..|...|++++|.+.|++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3667778888999999999999887653
No 466
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.82 E-value=4.2e+02 Score=29.16 Aligned_cols=95 Identities=14% Similarity=0.051 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--------CChH
Q 004340 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILADK--------KNPL 671 (760)
Q Consensus 603 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p--------~~~~ 671 (760)
.++..+|.-|...|+.+.|++.|-++-..+-.. ...+.++..+-...|+|..-..+..+|...-. -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 467789999999999999999999977665433 44677778888888998877777777665410 0123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 672 PMYQKANILLSLEKFDEALEVLEELK 697 (760)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~l~~al 697 (760)
+...-|.+.+.+++|..|.++|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44556666677779999998887654
No 467
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=45.63 E-value=4.1e+02 Score=28.41 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=69.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 004340 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEAL 690 (760)
Q Consensus 611 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 690 (760)
-+...|+...|.+.-.+ +++ .+...|.....++...++|++-..+.. ....|-.|.-...++...|+..+|.
T Consensus 186 ~li~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~-----skKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 186 KLIEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAENKDWDELEKFAK-----SKKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHhcCCHHHHHHHHh-----CCCCCCChHHHHHHHHHCCCHHHHH
Confidence 34556777666665333 333 346678888899999999987666543 2345666777888888999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004340 691 EVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLH 726 (760)
Q Consensus 691 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 726 (760)
.+..++ ++ ......|.+.|++.+|.+.
T Consensus 258 ~yI~k~----~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 258 KYIPKI----PD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHhC----Ch-----HHHHHHHHHCCCHHHHHHH
Confidence 888872 21 3466778889999988765
No 468
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.26 E-value=40 Score=27.49 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=10.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q 004340 580 ALEDFENGIRSYQSALR 596 (760)
Q Consensus 580 ~~g~~e~A~~~~~~al~ 596 (760)
..|++++|+.+|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34666666666666655
No 469
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=45.00 E-value=6.7e+02 Score=30.76 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCChHHHHHHHHHHHhcC
Q 004340 701 PRESGVYALMGKIYKRRNMHEKAMLHFGLALD---LKPSATDVATIKAAIEKLH 751 (760)
Q Consensus 701 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~l~~l~ 751 (760)
-++..++..-..-+..+|+|..|++++.++++ -.+....+....+.++.+|
T Consensus 1228 ~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1228 ASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred cCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 34445555555556667777777777777777 3344444444444555554
No 470
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=44.85 E-value=4e+02 Score=29.37 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 606 YGLGMVYLRQEKFEFSEHHFRMAF 629 (760)
Q Consensus 606 ~~la~~~~~~g~~~~A~~~l~~al 629 (760)
+..|.+|+.+++|.+|++.|-.++
T Consensus 276 Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554443
No 471
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=44.74 E-value=68 Score=28.15 Aligned_cols=48 Identities=15% Similarity=-0.064 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHcc
Q 004340 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVV 480 (760)
Q Consensus 433 l~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g 480 (760)
...+.+|...+..|++..|.+.+.+..+..+..+..+..-|++...+|
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 344445555555555555555555554444444444444444444444
No 472
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=44.62 E-value=2.3e+02 Score=29.54 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004340 585 ENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKF 618 (760)
Q Consensus 585 e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 618 (760)
+.|...+.+++.++|+...++..+..+-...|..
T Consensus 116 d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 116 DQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 4566666666666666666666555555555544
No 473
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.58 E-value=4.2e+02 Score=28.26 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HH
Q 004340 567 FAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR------HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---SV 637 (760)
Q Consensus 567 ~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~ 637 (760)
-.+++...|..|++.|+-+.|.+.+++..+..-. -.-....+|..|....-..+-++..+..++...+. -.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 3578999999999999999999999887764321 12234556666665544444444444444443322 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~ 666 (760)
.....|.......++.+|..+|-..+...
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 34445777777889999999988877544
No 474
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.22 E-value=1.4e+02 Score=35.83 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHhccccc
Q 004340 429 LLGLLRILGEGYRMSCMYRCKDALDVYLKLPHK 461 (760)
Q Consensus 429 l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~ 461 (760)
+-.+-..|.+||.+...|++.+|++.|..++-.
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~ 1020 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYS 1020 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 445777889999999999999999999987543
No 475
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=44.04 E-value=45 Score=21.41 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQ 562 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~ 562 (760)
|..+-..|.+.|++++|.++|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555566666655555543
No 476
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=43.96 E-value=46 Score=21.39 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=9.2
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 004340 642 LGTAMHALKRSGEAIEMMEKA 662 (760)
Q Consensus 642 la~~~~~~g~~~eAl~~l~~a 662 (760)
+...|.+.|++++|.++|.+.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444443
No 477
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=43.58 E-value=3.3e+02 Score=26.84 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHE-YVALEDFENGIRSYQSALRV 597 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~-~~~~g~~e~A~~~~~~al~~ 597 (760)
...+..+-......|+++.|-++|--.+...+-+......+|.. +...+.-....++++.....
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~ 105 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISF 105 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 34555666667788999999999998888776666655555544 44444444444555554443
No 478
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.35 E-value=6.5e+02 Score=30.11 Aligned_cols=52 Identities=13% Similarity=-0.126 Sum_probs=35.5
Q ss_pred HhcCChHHHHHHHhcccccCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 004340 443 SCMYRCKDALDVYLKLPHKHYN--TGWVLSQVGKAYFEVVDYLEAERAFTLARR 494 (760)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~p~--~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 494 (760)
+..+.|++|++.-+......+. ...+....-.-+...|+|++|...+-+++.
T Consensus 367 l~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 4566889999999887776664 333444444445678999998887766653
No 479
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=43.13 E-value=1.2e+02 Score=24.84 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhccchhHHHHHHhhhhcCCCch-hhHHHHHHHhhcCCHHHHHHHhccCCCcchhHHHHH
Q 004340 5 LTDCVQNSLRYFMYRNAIFLCERLCAEFPSEV-NLQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAV 72 (760)
Q Consensus 5 l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~-~~~llA~~~~~~~~~~~a~~~l~~~~~~~~~yl~a~ 72 (760)
|.++---..+|++++.|.-+-.-|=-..|+++ -+...|..||..|+..+|..+|....++.+--|.+.
T Consensus 9 ~VEaalAavNH~L~~ea~ailnalP~li~D~~~r~vcea~llfGL~~~~~A~~~L~~~~~~eA~~Lr~l 77 (79)
T TIGR02498 9 VVEAALAAVNHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLENMDDEEAQLLRSL 77 (79)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhcccccCCHhHHHHHHHHHHHhcCcHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444556788888888877777767777765 456779999999999999999999888877666553
No 480
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=42.73 E-value=1.3e+02 Score=24.50 Aligned_cols=29 Identities=7% Similarity=-0.168 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 004340 466 GWVLSQVGKAYFEVVDYLEAERAFTLARR 494 (760)
Q Consensus 466 ~~~l~~la~~~~~~g~~~~A~~~~~~al~ 494 (760)
+..+...|.-+-..|++.+|+.+|+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455667777888999998888887765
No 481
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.33 E-value=7.2e+02 Score=35.24 Aligned_cols=202 Identities=13% Similarity=0.036 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC-HHHHHHHH-HHHHHccCHHHHHHHHHHHHHh------CCCCHHH
Q 004340 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYS-LEGMDIYS-TVLYHLKEDMKLSYLAQELITT------DRLAPQS 536 (760)
Q Consensus 465 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la-~~l~~l~~~~~a~~~~~~~l~~------~p~~~~~ 536 (760)
.+|+....|.+..+.|-++-++..+.+...+---. .++...+. .+...++...+....++-+-.. +...++.
T Consensus 2735 ~A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aef 2814 (3550)
T KOG0889|consen 2735 LAWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEF 2814 (3550)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHH
Confidence 35666677777777777777777777766543211 11221111 1111222221111111111111 1224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC----HHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA----LED----FENGIRSYQSALRVDARHYNSWYGL 608 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~----~g~----~e~A~~~~~~al~~~p~~~~a~~~l 608 (760)
+...|....+.|+.++|-+.|..|++++...+.+|..-|..... .+. -..|+.+|-+|...... ..+.-.+
T Consensus 2815 f~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~-skaRk~i 2893 (3550)
T KOG0889|consen 2815 FTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNS-SKARKLI 2893 (3550)
T ss_pred HHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccc-hhhHHHH
Confidence 77888899999999999999999999988888888877765433 222 24566777777665432 3344445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-----HHHHHHcCChHHHHHHHHHHHHhCCC
Q 004340 609 GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYL-----GTAMHALKRSGEAIEMMEKAILADKK 668 (760)
Q Consensus 609 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l-----a~~~~~~g~~~eAl~~l~~al~~~p~ 668 (760)
+.+++-+. ++.|...+.++++..-.+..+|+.+ -......++...+.-++.+.-+..|.
T Consensus 2894 akvLwLls-~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yPQ 2957 (3550)
T KOG0889|consen 2894 AKVLWLLS-FDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYPQ 2957 (3550)
T ss_pred HHHHHHHH-hccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccchhHHHHHHHHHHHhchH
Confidence 54444332 2333333333333322222222222 22223344455555555555555544
No 482
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.24 E-value=4.7e+02 Score=32.72 Aligned_cols=54 Identities=17% Similarity=-0.001 Sum_probs=35.3
Q ss_pred HhcCChHHHHHHHhccccc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Q 004340 443 SCMYRCKDALDVYLKLPHK-HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRAS 496 (760)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~-~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~ 496 (760)
+.+.+|..-.+++.-...- .-..+...+.+|.+|...|+..+|+.+|.++..-.
T Consensus 896 fg~cqy~~lqdy~~llh~wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ 950 (1480)
T KOG4521|consen 896 FGQCQYKVLQDYLNLLHSWCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSGF 950 (1480)
T ss_pred hcchhHHHHHHHHHHhhhhhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhcc
Confidence 3334444444444433221 12345667888999999999999999999987654
No 483
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.95 E-value=2.6e+02 Score=25.20 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 688 EALEVLEELKEY--APRESGVYALMGKIYKRRNMHEKAMLHFGLAL 731 (760)
Q Consensus 688 eA~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 731 (760)
.+.++|..+... ....+..|...|..+...|++++|.+.|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 666666666553 34556677777777777777777777777653
No 484
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.85 E-value=47 Score=27.19 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=9.6
Q ss_pred HcCCHHHHHHHHHHHHH
Q 004340 580 ALEDFENGIRSYQSALR 596 (760)
Q Consensus 580 ~~g~~e~A~~~~~~al~ 596 (760)
..|+|++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 44566666666555544
No 485
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=41.20 E-value=19 Score=33.40 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=24.3
Q ss_pred chhHHHHHHHHhcCChhHHHHhhCCCC
Q 004340 65 LSRYLFAVACYQMDLLSEAEAALSPVN 91 (760)
Q Consensus 65 ~~~yl~a~c~~~l~~~~ea~~~l~~~~ 91 (760)
.-.|+||++|||.+.|+-|..+|.++.
T Consensus 75 ~d~yllAksyFD~kEy~RaA~~L~~~~ 101 (142)
T PF04049_consen 75 YDKYLLAKSYFDCKEYDRAAHVLKDCK 101 (142)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHccCC
Confidence 589999999999999999999997643
No 486
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=40.93 E-value=67 Score=20.70 Aligned_cols=28 Identities=14% Similarity=0.030 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 004340 468 VLSQVGKAYFEVVDYLEAERAFTLARRA 495 (760)
Q Consensus 468 ~l~~la~~~~~~g~~~~A~~~~~~al~~ 495 (760)
.|..+..++.+.|+++.|..+|+.+.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4566778888888999988888887653
No 487
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.48 E-value=30 Score=34.95 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHHCC
Q 004340 685 KFDEALEVLEELKEYAP 701 (760)
Q Consensus 685 ~~~eA~~~l~~al~~~p 701 (760)
+...|+.+|+++++++|
T Consensus 193 ~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 193 TLQLALALLQRAFQLND 209 (230)
T ss_pred cHHHHHHHHHHHHHhCC
Confidence 44444444444444444
No 488
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=39.99 E-value=1.9e+02 Score=33.49 Aligned_cols=81 Identities=10% Similarity=0.000 Sum_probs=61.3
Q ss_pred HHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Q 004340 442 MSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSY 521 (760)
Q Consensus 442 ~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~ 521 (760)
+-+....+.|....+.-..........++..|..+-..+..++|-.+|++++..+|+ +.+..++.-++..|-..+|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 334455666777777666666667777888888888888888899999988888887 677778888888887777766
Q ss_pred HHH
Q 004340 522 LAQ 524 (760)
Q Consensus 522 ~~~ 524 (760)
.++
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 665
No 489
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=39.98 E-value=2.7e+02 Score=29.11 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004340 550 HETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFEN 586 (760)
Q Consensus 550 ~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~ 586 (760)
.+.|...+.+|+.++|....++..+..+-...|+.+=
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~W 151 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDW 151 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchH
Confidence 4778999999999999999999888888777777653
No 490
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=39.41 E-value=4.9e+02 Score=27.56 Aligned_cols=189 Identities=11% Similarity=0.022 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHH--h--CCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 535 QSWCAMGNCYSLQK-DHETALKNFQRAVQ--L--NPR------------FAYGHTLCGHEYVALEDFENGIRSYQSALRV 597 (760)
Q Consensus 535 ~~~~~la~~~~~~g-~~~~A~~~~~kal~--~--~p~------------~~~a~~~la~~~~~~g~~e~A~~~~~~al~~ 597 (760)
+....++..+..++ ....+..+.+-++= + -|. ..+....+-..+ ..+++.+.++..++.+..
T Consensus 50 ~~~~~lA~~l~eq~~~~~~~yrL~R~a~W~~I~~lP~~~~~g~T~L~~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~ 128 (301)
T TIGR03362 50 DTLLQVADLLLEQDPDDPRGYRLRRTALWGTITALPMSNADGRTRLAPPPADRVADYQELL-AQADWAALLQRVEQSLSL 128 (301)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence 77778888777765 34566666555431 1 121 122222233333 667888899999999888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHh-----
Q 004340 598 DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAF----QISPHSSVIMSYLGTAMHALKR---SGEAIEMMEKAILA----- 665 (760)
Q Consensus 598 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al----~~~p~~~~~~~~la~~~~~~g~---~~eAl~~l~~al~~----- 665 (760)
.|--.+.++..+.++.++| ++.+...++..+ +.-|.-.. +.+.-|. -++...++......
T Consensus 129 ~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~-------L~F~DGtPFad~~T~~WL~~~~~~~~~~~ 200 (301)
T TIGR03362 129 APFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLE-------LKFSDGTPFADDETRAWLAQHATRSNAAS 200 (301)
T ss_pred CchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhh-------cccCCCCCCCCHHHHHHHHhccccccccc
Confidence 8877888888899999998 455555554433 33333211 1111111 01222222211000
Q ss_pred ------CC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 666 ------DK--KNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR---ESGVYALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 666 ------~p--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
.. .+......-+..+...|..++|+..++..+...+. .....+.+++++...|.++-|...|+...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 201 VAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred ccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01 11122234467788889999999999976553332 245567789999999999999999988765
No 491
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=39.38 E-value=60 Score=35.92 Aligned_cols=128 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCH------------------HHHHHHHHHHHHccCHHHHHHHHH
Q 004340 429 LLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTG------------------WVLSQVGKAYFEVVDYLEAERAFT 490 (760)
Q Consensus 429 l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~------------------~~l~~la~~~~~~g~~~~A~~~~~ 490 (760)
+-.+...|..||++...|++.+|+..|+.++..-|-.. .....+-.-..+..--+...+--+
T Consensus 201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k 280 (422)
T PF06957_consen 201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK 280 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Q ss_pred HHHHHC----------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004340 491 LARRAS----------PYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKN 556 (760)
Q Consensus 491 ~al~~~----------p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 556 (760)
+.+++. +...-++..-....+..+++..|..++.+++++.|....+-...-...........|+++
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~~tDa~~i 356 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACERNPTDAHEI 356 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS--BSS--
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCceec
No 492
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.37 E-value=2.5e+02 Score=32.02 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 658 MMEKAILADKKNPL-PMYQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 658 ~l~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
+++...+..|..+. -|+.++.++..+.+-+.|.++++++.+
T Consensus 195 ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~ 236 (926)
T COG5116 195 ILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVK 236 (926)
T ss_pred HHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHh
Confidence 34444444444321 234455555555566666666665544
No 493
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.22 E-value=2.6e+02 Score=31.98 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Q 004340 468 VLSQVGKAYFEVVDYLEAERAFTLAR 493 (760)
Q Consensus 468 ~l~~la~~~~~~g~~~~A~~~~~~al 493 (760)
+-..+..+|+.+|+|++|+.+--.+-
T Consensus 61 aaL~~SKvYy~LgeY~~Ai~yAL~ag 86 (926)
T COG5116 61 AALCLSKVYYVLGEYQQAIEYALRAG 86 (926)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 66778999999999999999866553
No 494
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=38.67 E-value=5.2e+02 Score=27.62 Aligned_cols=101 Identities=11% Similarity=0.101 Sum_probs=70.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004340 578 YVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIE 657 (760)
Q Consensus 578 ~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~ 657 (760)
+...|+...|.++-.+ +++ .+...|+....++...++|++-...... ...|.-|.-...++...|+..+|..
T Consensus 187 li~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 3456776666555332 222 3466788888999999999986664432 3344556667788889999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 658 MMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEE 695 (760)
Q Consensus 658 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 695 (760)
+..++ + .-.....|.+.|++.+|.+..-+
T Consensus 259 yI~k~----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 259 YIPKI----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHhC----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 98871 1 14567889999999999876543
No 495
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.66 E-value=5.3e+02 Score=27.71 Aligned_cols=165 Identities=13% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhcc---------------------------------cccCCCCHHHHHHHHHHHH
Q 004340 431 GLLRILGEGYRMSCMYRCKDALDVYLKL---------------------------------PHKHYNTGWVLSQVGKAYF 477 (760)
Q Consensus 431 ~ll~~l~~a~~~~~~g~~~eAi~~l~~~---------------------------------~~~~p~~~~~l~~la~~~~ 477 (760)
.++..|..|..++..++|.+....|..+ -....+-..+.+.+|.-|.
T Consensus 57 ~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm 136 (449)
T COG3014 57 ALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYM 136 (449)
T ss_pred HHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHH
Q ss_pred HccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004340 478 EVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNF 557 (760)
Q Consensus 478 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 557 (760)
...|++.|.-.|.++...... ....+.++..-..+-++....++..-..++........-=.-. ..
T Consensus 137 ~~nD~~~ArVEfnRan~rQ~~-------------AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny-~~ 202 (449)
T COG3014 137 LLNDSAKARVEFNRANERQRR-------------AKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNY-LD 202 (449)
T ss_pred HhcchhhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHH-HH
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 558 QRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (760)
Q Consensus 558 ~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la 609 (760)
+--...+-.++++-+..|..+...+++.++...+..++-+.|+........+
T Consensus 203 ~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~ 254 (449)
T COG3014 203 KYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYL 254 (449)
T ss_pred HHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhc
No 496
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.54 E-value=3.2e+02 Score=29.02 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 536 SWCAMGNCYSLQKDHETALKNFQRAVQLNPR--------FAYGHTLCGHEYVALEDFENGIRSYQSA 594 (760)
Q Consensus 536 ~~~~la~~~~~~g~~~~A~~~~~kal~~~p~--------~~~a~~~la~~~~~~g~~e~A~~~~~~a 594 (760)
....+|.+|...++|..|...+...- .+.. ....+..+|.+|...++..+|..+..++
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~-~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIP-LDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccC-cccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44566677777777776666554321 1110 1123455666666666666666666554
No 497
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=38.48 E-value=2.2e+02 Score=23.29 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHh
Q 004340 434 RILGEGYRMSCMYRCKDALDVYL 456 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~ 456 (760)
..+.+|..+-..|+|++|+.+|.
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~ 30 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQ 30 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHH
Confidence 33444555555555555555543
No 498
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.13 E-value=2e+02 Score=31.71 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 571 HTLCGHEYVALEDFENGIRSYQSALR 596 (760)
Q Consensus 571 ~~~la~~~~~~g~~e~A~~~~~~al~ 596 (760)
+..-|.+.+.+|+-++|.++++.+..
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 44567777777777777777777654
No 499
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.83 E-value=99 Score=30.15 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=20.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004340 591 YQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP 633 (760)
Q Consensus 591 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p 633 (760)
.++.++..|+ +..+..++.++...|+.++|....+++....|
T Consensus 134 a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 134 AERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3333333343 44455555555555555555555555555555
No 500
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=37.77 E-value=6.7e+02 Score=31.23 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=15.4
Q ss_pred HHHHHccCHHHHHHHHHHH
Q 004340 474 KAYFEVVDYLEAERAFTLA 492 (760)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~a 492 (760)
+-+...++|.+|..+.++-
T Consensus 702 r~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 702 RKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred HHHHhhccHHHHHHHHHHh
Confidence 4567899999999988764
Done!