Query 004340
Match_columns 760
No_of_seqs 1107 out of 2795
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 22:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.1E-39 3.9E-44 378.2 55.4 484 3-746 85-592 (597)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-36 6.6E-41 332.1 45.1 312 440-751 75-387 (388)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-35 4.3E-40 325.6 42.8 282 438-719 107-388 (388)
4 3ieg_A DNAJ homolog subfamily 100.0 3.9E-32 1.3E-36 291.9 44.9 316 432-747 3-349 (359)
5 2gw1_A Mitochondrial precursor 100.0 1.9E-32 6.5E-37 310.4 37.5 284 463-747 183-492 (514)
6 2xpi_A Anaphase-promoting comp 100.0 8.2E-32 2.8E-36 312.1 39.7 281 435-715 308-595 (597)
7 2y4t_A DNAJ homolog subfamily 100.0 3.5E-31 1.2E-35 295.4 43.3 315 432-746 26-371 (450)
8 3fp2_A TPR repeat-containing p 100.0 5.5E-32 1.9E-36 308.9 34.1 295 447-742 175-500 (537)
9 3hym_B Cell division cycle pro 100.0 1.2E-30 4E-35 277.6 36.3 296 457-752 13-320 (330)
10 3fp2_A TPR repeat-containing p 100.0 1.1E-29 3.7E-34 289.9 35.0 326 432-758 25-483 (537)
11 3ieg_A DNAJ homolog subfamily 100.0 7.4E-29 2.5E-33 266.3 39.6 294 465-758 2-327 (359)
12 2y4t_A DNAJ homolog subfamily 100.0 2.9E-29 1E-33 279.8 37.6 310 449-758 9-350 (450)
13 3hym_B Cell division cycle pro 100.0 1.5E-29 5E-34 269.0 33.5 286 436-721 26-322 (330)
14 2gw1_A Mitochondrial precursor 100.0 9.8E-30 3.3E-34 288.1 32.0 322 433-756 7-468 (514)
15 1fch_A Peroxisomal targeting s 100.0 2.1E-29 7.1E-34 272.9 29.9 291 442-733 35-359 (368)
16 4eqf_A PEX5-related protein; a 100.0 8.9E-29 3E-33 268.5 26.6 270 463-732 62-355 (365)
17 1fch_A Peroxisomal targeting s 100.0 3.1E-28 1.1E-32 263.6 26.4 300 447-757 16-350 (368)
18 3cv0_A Peroxisome targeting si 100.0 1.6E-27 5.5E-32 252.9 28.5 270 468-737 23-319 (327)
19 4g1t_A Interferon-induced prot 100.0 7.6E-27 2.6E-31 262.3 34.0 302 432-743 138-469 (472)
20 4g1t_A Interferon-induced prot 100.0 7E-26 2.4E-30 254.4 36.7 301 439-739 58-407 (472)
21 4eqf_A PEX5-related protein; a 100.0 1.3E-26 4.5E-31 251.3 28.0 264 435-698 68-355 (365)
22 3cv0_A Peroxisome targeting si 100.0 1.4E-26 4.8E-31 245.6 27.2 267 435-701 24-317 (327)
23 2h6f_A Protein farnesyltransfe 100.0 1E-26 3.5E-31 254.1 26.6 256 458-714 89-363 (382)
24 2h6f_A Protein farnesyltransfe 99.9 1.2E-26 4.1E-31 253.5 24.5 253 492-745 89-360 (382)
25 2pl2_A Hypothetical conserved 99.9 4.5E-25 1.5E-29 222.0 24.7 200 531-731 2-212 (217)
26 3uq3_A Heat shock protein STI1 99.9 2E-24 6.9E-29 220.6 29.5 237 465-744 4-253 (258)
27 3mkr_A Coatomer subunit epsilo 99.9 3.1E-24 1.1E-28 226.2 31.6 260 438-705 5-270 (291)
28 3u4t_A TPR repeat-containing p 99.9 4.2E-25 1.4E-29 228.5 24.3 247 466-747 3-264 (272)
29 3u4t_A TPR repeat-containing p 99.9 6.9E-25 2.3E-29 226.9 25.9 254 434-718 5-269 (272)
30 3uq3_A Heat shock protein STI1 99.9 5.4E-24 1.9E-28 217.4 29.7 217 533-758 4-228 (258)
31 3mkr_A Coatomer subunit epsilo 99.9 1.1E-23 3.7E-28 222.0 29.6 265 473-745 6-276 (291)
32 2pl2_A Hypothetical conserved 99.9 5.4E-24 1.8E-28 214.1 24.3 199 463-696 2-211 (217)
33 3sf4_A G-protein-signaling mod 99.9 3.5E-24 1.2E-28 234.3 24.5 267 467-733 10-336 (406)
34 2xm6_A Protein corresponding t 99.9 1.1E-21 3.9E-26 222.1 44.9 280 445-740 164-474 (490)
35 3sf4_A G-protein-signaling mod 99.9 1.5E-24 5.1E-29 237.3 19.6 291 432-722 9-365 (406)
36 4a1s_A PINS, partner of inscut 99.9 8.7E-24 3E-28 232.7 23.8 281 432-740 48-379 (411)
37 3ro2_A PINS homolog, G-protein 99.9 1.3E-23 4.3E-28 222.6 22.5 277 433-737 6-336 (338)
38 2q7f_A YRRB protein; TPR, prot 99.9 4.4E-23 1.5E-27 209.1 23.7 216 533-748 22-237 (243)
39 2vq2_A PILW, putative fimbrial 99.9 7.4E-22 2.5E-26 197.1 29.5 216 529-744 3-222 (225)
40 2ho1_A Type 4 fimbrial biogene 99.9 2.5E-22 8.4E-27 205.3 26.6 215 530-744 32-249 (252)
41 4a1s_A PINS, partner of inscut 99.9 4.9E-23 1.7E-27 226.6 20.9 240 435-702 89-375 (411)
42 2q7f_A YRRB protein; TPR, prot 99.9 2.5E-22 8.7E-27 203.4 24.5 215 467-715 24-238 (243)
43 3vtx_A MAMA; tetratricopeptide 99.9 8E-22 2.7E-26 191.8 25.4 173 566-738 3-175 (184)
44 3ro2_A PINS homolog, G-protein 99.9 8E-23 2.7E-27 216.4 19.7 240 435-702 46-335 (338)
45 2xm6_A Protein corresponding t 99.9 3.9E-20 1.3E-24 209.5 41.9 283 445-743 128-445 (490)
46 1ouv_A Conserved hypothetical 99.9 9.4E-21 3.2E-25 196.7 33.3 232 462-739 2-257 (273)
47 1ouv_A Conserved hypothetical 99.9 9.7E-21 3.3E-25 196.6 33.3 217 530-758 2-243 (273)
48 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.1E-22 1.1E-26 206.9 21.8 244 445-727 18-269 (275)
49 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.7E-22 9.2E-27 207.3 21.1 248 476-757 15-266 (275)
50 3vtx_A MAMA; tetratricopeptide 99.9 1.7E-21 5.9E-26 189.4 24.6 173 532-704 3-175 (184)
51 2ooe_A Cleavage stimulation fa 99.9 6.4E-20 2.2E-24 209.8 40.6 293 445-738 143-497 (530)
52 4abn_A Tetratricopeptide repea 99.9 5.5E-22 1.9E-26 223.8 23.0 213 517-730 85-318 (474)
53 2vq2_A PILW, putative fimbrial 99.9 1.4E-20 4.9E-25 187.7 30.3 216 461-710 3-222 (225)
54 2ooe_A Cleavage stimulation fa 99.9 1.8E-20 6E-25 214.5 35.1 295 443-739 23-460 (530)
55 2ho1_A Type 4 fimbrial biogene 99.9 6.5E-21 2.2E-25 194.7 28.0 209 466-708 37-247 (252)
56 3ulq_A Response regulator aspa 99.9 9.7E-22 3.3E-26 215.0 21.0 303 432-736 12-371 (383)
57 4abn_A Tetratricopeptide repea 99.9 2.4E-21 8.2E-26 218.5 24.6 215 481-696 83-318 (474)
58 4i17_A Hypothetical protein; T 99.9 2E-20 6.8E-25 188.7 27.2 212 531-749 4-225 (228)
59 2ond_A Cleavage stimulation fa 99.9 1.5E-20 5E-25 199.5 25.4 222 483-704 33-275 (308)
60 2ond_A Cleavage stimulation fa 99.9 3E-20 1E-24 197.2 27.2 223 517-739 33-276 (308)
61 4i17_A Hypothetical protein; T 99.8 2.6E-19 8.9E-24 180.5 27.6 212 463-715 4-225 (228)
62 4gyw_A UDP-N-acetylglucosamine 99.8 2E-20 6.7E-25 219.9 21.6 174 529-702 4-177 (723)
63 4gyw_A UDP-N-acetylglucosamine 99.8 2.9E-20 1E-24 218.4 21.4 172 496-667 5-176 (723)
64 3nf1_A KLC 1, kinesin light ch 99.8 1.5E-20 5.1E-25 197.5 14.9 252 458-736 19-310 (311)
65 3nf1_A KLC 1, kinesin light ch 99.8 9.2E-21 3.1E-25 199.1 13.1 228 531-758 24-299 (311)
66 3e4b_A ALGK; tetratricopeptide 99.8 1E-19 3.4E-24 204.0 21.9 277 443-735 46-389 (452)
67 3dra_A Protein farnesyltransfe 99.8 2.4E-18 8.2E-23 181.0 28.7 225 521-745 54-300 (306)
68 3q15_A PSP28, response regulat 99.8 4.5E-19 1.5E-23 193.6 23.0 302 432-734 12-366 (378)
69 3qky_A Outer membrane assembly 99.8 5.1E-19 1.7E-23 182.5 21.5 196 528-740 9-231 (261)
70 3e4b_A ALGK; tetratricopeptide 99.8 1.6E-18 5.6E-23 194.1 27.0 294 437-749 8-365 (452)
71 3qky_A Outer membrane assembly 99.8 1.4E-18 4.6E-23 179.3 22.9 172 562-750 9-198 (261)
72 3ulq_A Response regulator aspa 99.8 2.6E-19 8.9E-24 195.6 18.2 234 467-701 104-370 (383)
73 2pzi_A Probable serine/threoni 99.8 5E-19 1.7E-23 208.5 20.7 188 528-719 388-583 (681)
74 1hz4_A MALT regulatory protein 99.8 9.9E-18 3.4E-22 182.1 29.4 266 434-699 16-322 (373)
75 3dra_A Protein farnesyltransfe 99.8 1.5E-17 5.2E-22 174.9 28.3 240 443-712 43-301 (306)
76 1xi4_A Clathrin heavy chain; a 99.8 1.9E-16 6.7E-21 189.1 40.6 262 437-727 1110-1378(1630)
77 3as5_A MAMA; tetratricopeptide 99.8 5.8E-18 2E-22 162.9 21.6 170 569-738 9-178 (186)
78 2pzi_A Probable serine/threoni 99.8 2E-18 6.8E-23 203.4 22.0 191 457-651 385-583 (681)
79 1qqe_A Vesicular transport pro 99.8 2E-18 7E-23 181.6 19.9 202 541-742 44-278 (292)
80 3as5_A MAMA; tetratricopeptide 99.8 1.1E-17 3.8E-22 160.9 21.9 171 534-704 8-178 (186)
81 1hz4_A MALT regulatory protein 99.8 6.2E-17 2.1E-21 175.7 30.3 270 466-735 14-324 (373)
82 3q15_A PSP28, response regulat 99.8 5.9E-18 2E-22 184.7 22.0 248 425-700 94-366 (378)
83 3urz_A Uncharacterized protein 99.8 1.4E-17 4.9E-22 165.8 21.3 195 533-747 3-199 (208)
84 3edt_B KLC 2, kinesin light ch 99.8 2.4E-18 8.1E-23 177.5 16.0 230 478-734 13-282 (283)
85 4ga2_A E3 SUMO-protein ligase 99.8 1.3E-18 4.5E-23 163.9 11.3 145 574-718 3-148 (150)
86 4ga2_A E3 SUMO-protein ligase 99.8 2E-18 6.7E-23 162.7 11.2 146 540-685 3-149 (150)
87 3urz_A Uncharacterized protein 99.8 2.2E-17 7.4E-22 164.5 19.1 185 499-702 3-189 (208)
88 1qqe_A Vesicular transport pro 99.8 8.3E-18 2.8E-22 176.9 16.9 226 447-714 32-284 (292)
89 3dss_A Geranylgeranyl transfer 99.8 1.1E-15 3.8E-20 161.6 32.7 257 424-714 21-319 (331)
90 2yhc_A BAMD, UPF0169 lipoprote 99.8 4.3E-17 1.5E-21 164.3 20.8 190 533-739 3-219 (225)
91 3dss_A Geranylgeranyl transfer 99.7 1.3E-15 4.4E-20 161.1 31.3 241 479-743 42-314 (331)
92 1xi4_A Clathrin heavy chain; a 99.7 6.1E-16 2.1E-20 184.9 31.6 275 439-754 1056-1330(1630)
93 3edt_B KLC 2, kinesin light ch 99.7 1.9E-17 6.4E-22 170.8 14.0 224 449-699 25-281 (283)
94 2yhc_A BAMD, UPF0169 lipoprote 99.7 5.5E-16 1.9E-20 156.2 22.5 206 465-703 3-217 (225)
95 3q7a_A Farnesyltransferase alp 99.7 1.5E-15 5.1E-20 161.2 25.0 228 518-745 72-344 (349)
96 2r5s_A Uncharacterized protein 99.7 9.3E-17 3.2E-21 155.2 13.5 163 569-732 7-172 (176)
97 3qou_A Protein YBBN; thioredox 99.7 6.8E-16 2.3E-20 161.9 20.0 168 565-732 114-283 (287)
98 4gco_A Protein STI-1; structur 99.7 5.1E-16 1.7E-20 141.5 15.6 117 597-713 8-124 (126)
99 4gco_A Protein STI-1; structur 99.7 4.5E-16 1.5E-20 141.8 15.0 118 528-645 7-124 (126)
100 3q7a_A Farnesyltransferase alp 99.7 5.8E-15 2E-19 156.7 25.5 234 446-712 68-345 (349)
101 2r5s_A Uncharacterized protein 99.7 2.2E-16 7.6E-21 152.6 13.3 165 533-698 5-172 (176)
102 3qou_A Protein YBBN; thioredox 99.7 1.4E-15 4.7E-20 159.5 20.2 168 531-698 114-283 (287)
103 3gyz_A Chaperone protein IPGC; 99.7 1.4E-16 4.7E-21 150.1 11.0 127 622-748 22-148 (151)
104 1b89_A Protein (clathrin heavy 99.7 2.9E-17 1E-21 178.2 6.0 283 437-751 37-326 (449)
105 2vsy_A XCC0866; transferase, g 99.7 1.2E-15 4.1E-20 175.9 19.9 164 548-711 3-169 (568)
106 2vsy_A XCC0866; transferase, g 99.7 1.5E-15 5E-20 175.2 20.6 161 581-741 2-165 (568)
107 2ifu_A Gamma-SNAP; membrane fu 99.7 1.8E-15 6.2E-20 160.2 18.8 220 479-725 4-253 (307)
108 1b89_A Protein (clathrin heavy 99.7 2.9E-16 9.8E-21 170.4 12.2 279 444-756 15-301 (449)
109 2ifu_A Gamma-SNAP; membrane fu 99.7 2E-15 6.7E-20 159.9 18.0 201 513-739 4-229 (307)
110 1p5q_A FKBP52, FK506-binding p 99.6 2.1E-17 7.2E-22 177.5 1.6 185 547-733 78-294 (336)
111 3rjv_A Putative SEL1 repeat pr 99.6 1E-14 3.6E-19 145.5 20.4 175 552-734 4-198 (212)
112 4f3v_A ESX-1 secretion system 99.6 6E-16 2E-20 159.2 11.2 205 537-744 10-247 (282)
113 3gyz_A Chaperone protein IPGC; 99.6 1.3E-15 4.6E-20 143.3 12.1 118 587-704 21-138 (151)
114 2c2l_A CHIP, carboxy terminus 99.6 1.4E-15 4.9E-20 158.9 12.4 198 531-733 1-199 (281)
115 3rjv_A Putative SEL1 repeat pr 99.6 4.4E-14 1.5E-18 140.9 21.5 184 519-712 5-208 (212)
116 2fo7_A Synthetic consensus TPR 99.6 5.2E-14 1.8E-18 127.1 19.5 133 604-736 3-135 (136)
117 2vgx_A Chaperone SYCD; alterna 99.6 4.4E-15 1.5E-19 139.3 11.6 118 623-740 8-125 (148)
118 2fo7_A Synthetic consensus TPR 99.6 1.3E-13 4.3E-18 124.5 20.0 132 536-667 3-134 (136)
119 4f3v_A ESX-1 secretion system 99.6 6.2E-15 2.1E-19 151.6 11.6 136 573-710 107-247 (282)
120 1p5q_A FKBP52, FK506-binding p 99.6 5E-16 1.7E-20 166.8 3.5 152 547-698 126-293 (336)
121 2vgx_A Chaperone SYCD; alterna 99.6 1.4E-14 4.7E-19 135.9 12.9 118 589-706 8-125 (148)
122 1dce_A Protein (RAB geranylger 99.6 9E-15 3.1E-19 167.7 13.0 188 549-736 44-270 (567)
123 3mv2_B Coatomer subunit epsilo 99.6 1.8E-13 6.1E-18 142.5 21.6 249 440-742 21-291 (310)
124 3mv2_B Coatomer subunit epsilo 99.5 1.1E-13 3.9E-18 144.0 18.8 194 537-744 48-261 (310)
125 2xcb_A PCRH, regulatory protei 99.5 2.5E-14 8.6E-19 132.8 12.0 114 591-704 7-120 (142)
126 2xcb_A PCRH, regulatory protei 99.5 2.1E-14 7.2E-19 133.3 11.4 123 623-745 5-127 (142)
127 2e2e_A Formate-dependent nitri 99.5 4.5E-14 1.5E-18 135.9 13.8 134 614-747 22-158 (177)
128 1dce_A Protein (RAB geranylger 99.5 1.8E-13 6.3E-18 156.7 20.9 170 519-688 48-244 (567)
129 4e6h_A MRNA 3'-END-processing 99.5 9E-12 3.1E-16 144.8 34.8 183 554-736 329-536 (679)
130 2c2l_A CHIP, carboxy terminus 99.5 3.6E-14 1.2E-18 148.3 12.7 197 463-698 1-198 (281)
131 2qfc_A PLCR protein; TPR, HTH, 99.5 4.2E-13 1.4E-17 140.7 20.7 163 571-733 78-266 (293)
132 2fbn_A 70 kDa peptidylprolyl i 99.5 2.7E-14 9.1E-19 140.5 10.1 158 575-732 11-185 (198)
133 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.7E-13 1.6E-17 132.5 19.0 130 570-702 8-153 (213)
134 2qfc_A PLCR protein; TPR, HTH, 99.5 6.8E-13 2.3E-17 139.1 21.1 166 534-699 75-266 (293)
135 1a17_A Serine/threonine protei 99.5 6.7E-13 2.3E-17 125.2 19.0 132 602-733 13-146 (166)
136 1hh8_A P67PHOX, NCF-2, neutrop 99.5 6.5E-13 2.2E-17 131.5 19.2 133 535-670 7-155 (213)
137 1a17_A Serine/threonine protei 99.5 8.4E-13 2.9E-17 124.6 18.9 131 534-664 13-145 (166)
138 3upv_A Heat shock protein STI1 99.5 4.1E-13 1.4E-17 121.4 16.0 97 638-734 6-102 (126)
139 3upv_A Heat shock protein STI1 99.5 3.9E-13 1.3E-17 121.5 15.7 114 534-647 4-123 (126)
140 2e2e_A Formate-dependent nitri 99.5 1.6E-13 5.6E-18 132.0 13.3 123 581-703 23-148 (177)
141 2fbn_A 70 kDa peptidylprolyl i 99.5 5.6E-14 1.9E-18 138.2 9.4 149 542-690 12-176 (198)
142 2lni_A Stress-induced-phosphop 99.5 6.8E-13 2.3E-17 120.0 15.3 119 600-718 14-132 (133)
143 2vyi_A SGTA protein; chaperone 99.5 7.7E-13 2.6E-17 118.9 15.3 122 599-720 9-130 (131)
144 2vyi_A SGTA protein; chaperone 99.5 8.2E-13 2.8E-17 118.7 15.1 120 533-652 11-130 (131)
145 3u3w_A Transcriptional activat 99.5 8.3E-13 2.9E-17 138.4 17.1 160 575-734 82-267 (293)
146 4e6h_A MRNA 3'-END-processing 99.5 2.5E-11 8.6E-16 141.0 30.8 229 517-745 326-582 (679)
147 2lni_A Stress-induced-phosphop 99.5 9.2E-13 3.2E-17 119.1 14.7 119 532-650 14-132 (133)
148 3u3w_A Transcriptional activat 99.4 1.5E-12 5.3E-17 136.4 17.8 162 538-699 79-266 (293)
149 3sz7_A HSC70 cochaperone (SGT) 99.4 1.2E-12 4.1E-17 124.4 15.1 107 602-708 11-117 (164)
150 3sz7_A HSC70 cochaperone (SGT) 99.4 1.5E-12 5.1E-17 123.7 15.6 110 568-677 11-120 (164)
151 1na0_A Designed protein CTPR3; 99.4 6.4E-12 2.2E-16 111.7 18.5 117 602-718 9-125 (125)
152 4gcn_A Protein STI-1; structur 99.4 1.8E-12 6E-17 118.0 15.0 102 637-738 9-117 (127)
153 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1.5E-13 5.2E-18 153.8 8.1 145 546-690 246-405 (457)
154 1na0_A Designed protein CTPR3; 99.4 9E-12 3.1E-16 110.7 18.2 115 534-648 9-123 (125)
155 3q49_B STIP1 homology and U bo 99.4 3.3E-12 1.1E-16 116.7 14.7 105 530-634 5-109 (137)
156 3q49_B STIP1 homology and U bo 99.4 3.6E-12 1.2E-16 116.5 14.9 99 602-700 9-107 (137)
157 3gw4_A Uncharacterized protein 99.4 1.4E-12 4.8E-17 127.6 12.9 134 602-735 26-178 (203)
158 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 2.1E-13 7.2E-18 152.6 7.7 147 512-658 246-407 (457)
159 4gcn_A Protein STI-1; structur 99.4 6.5E-12 2.2E-16 114.2 15.7 101 534-634 8-115 (127)
160 1hxi_A PEX5, peroxisome target 99.4 3.1E-12 1.1E-16 115.3 13.1 100 639-738 20-119 (121)
161 1elw_A TPR1-domain of HOP; HOP 99.4 1.6E-11 5.4E-16 108.1 16.7 112 534-645 4-115 (118)
162 1elw_A TPR1-domain of HOP; HOP 99.4 1.4E-11 4.7E-16 108.5 16.2 99 641-739 9-107 (118)
163 3gw4_A Uncharacterized protein 99.4 6.3E-12 2.1E-16 122.9 15.1 156 545-700 3-177 (203)
164 2hr2_A Hypothetical protein; a 99.4 1.9E-12 6.6E-17 120.9 10.2 101 639-739 14-137 (159)
165 3rkv_A Putative peptidylprolyl 99.4 4.7E-12 1.6E-16 120.0 13.1 102 603-704 12-131 (162)
166 1hxi_A PEX5, peroxisome target 99.4 5.1E-12 1.8E-16 113.8 12.7 101 536-636 19-119 (121)
167 3rkv_A Putative peptidylprolyl 99.4 4.9E-12 1.7E-16 119.9 13.1 115 534-648 11-144 (162)
168 2xev_A YBGF; tetratricopeptide 99.4 2.1E-11 7.2E-16 110.0 16.7 114 638-751 4-123 (129)
169 2dba_A Smooth muscle cell asso 99.3 2.5E-11 8.4E-16 112.0 16.3 117 530-646 24-143 (148)
170 2dba_A Smooth muscle cell asso 99.3 2.1E-11 7.1E-16 112.4 15.7 106 636-741 28-136 (148)
171 2hr2_A Hypothetical protein; a 99.3 4.4E-12 1.5E-16 118.5 10.6 67 604-670 59-136 (159)
172 4b4t_Q 26S proteasome regulato 99.3 5.8E-11 2E-15 131.0 20.8 203 435-665 7-245 (434)
173 2xev_A YBGF; tetratricopeptide 99.3 3.8E-11 1.3E-15 108.3 15.8 111 605-715 5-121 (129)
174 1wao_1 Serine/threonine protei 99.3 7.5E-13 2.6E-17 148.9 4.3 125 604-728 8-134 (477)
175 2kck_A TPR repeat; tetratricop 99.3 9.7E-12 3.3E-16 108.5 10.6 106 632-737 2-110 (112)
176 1wao_1 Serine/threonine protei 99.3 2.4E-12 8.3E-17 144.7 8.1 136 534-669 6-154 (477)
177 2kck_A TPR repeat; tetratricop 99.3 1.7E-11 5.9E-16 106.8 12.0 105 530-634 2-109 (112)
178 1elr_A TPR2A-domain of HOP; HO 99.3 2.3E-11 7.9E-16 109.2 13.1 112 603-715 5-123 (131)
179 1elr_A TPR2A-domain of HOP; HO 99.3 3E-11 1E-15 108.4 13.6 114 534-648 4-124 (131)
180 2if4_A ATFKBP42; FKBP-like, al 99.3 2.4E-12 8.2E-17 138.1 7.3 163 560-739 171-334 (338)
181 4b4t_Q 26S proteasome regulato 99.3 5.7E-11 1.9E-15 131.0 18.6 200 534-733 4-245 (434)
182 2uy1_A Cleavage stimulation fa 99.3 4.9E-09 1.7E-13 118.0 34.7 289 432-730 14-380 (493)
183 2if4_A ATFKBP42; FKBP-like, al 99.3 3.7E-12 1.3E-16 136.7 6.8 154 534-704 179-333 (338)
184 3ro3_A PINS homolog, G-protein 99.2 3.9E-11 1.3E-15 111.7 12.4 132 604-735 11-160 (164)
185 1ihg_A Cyclophilin 40; ppiase 99.2 5.3E-11 1.8E-15 129.2 14.7 140 568-725 223-362 (370)
186 2uy1_A Cleavage stimulation fa 99.2 1.8E-09 6.2E-14 121.6 27.8 269 448-741 11-357 (493)
187 1ihg_A Cyclophilin 40; ppiase 99.2 6.4E-11 2.2E-15 128.5 14.7 140 534-691 223-362 (370)
188 1zu2_A Mitochondrial import re 99.2 3.9E-11 1.3E-15 111.8 10.2 108 614-745 14-132 (158)
189 3ro3_A PINS homolog, G-protein 99.2 9.9E-11 3.4E-15 108.9 13.1 139 534-700 9-159 (164)
190 1zu2_A Mitochondrial import re 99.2 4.7E-11 1.6E-15 111.3 10.1 70 547-616 15-94 (158)
191 3k9i_A BH0479 protein; putativ 99.2 2.8E-11 9.7E-16 107.9 7.8 90 582-671 4-96 (117)
192 3k9i_A BH0479 protein; putativ 99.2 3.2E-11 1.1E-15 107.5 7.9 103 546-648 2-107 (117)
193 3ffl_A Anaphase-promoting comp 99.0 2.5E-10 8.4E-15 105.6 6.8 103 4-113 22-167 (167)
194 2kat_A Uncharacterized protein 99.0 1.5E-09 5.2E-14 96.0 9.7 83 654-736 3-85 (115)
195 2kat_A Uncharacterized protein 99.0 6.2E-09 2.1E-13 92.0 12.6 81 621-701 4-84 (115)
196 2l6j_A TPR repeat-containing p 98.9 5.5E-10 1.9E-14 97.5 5.1 92 534-625 4-101 (111)
197 2l6j_A TPR repeat-containing p 98.9 4.3E-10 1.5E-14 98.2 4.3 90 637-726 5-100 (111)
198 1na3_A Designed protein CTPR2; 98.9 1.1E-08 3.6E-13 85.7 12.0 82 636-717 9-90 (91)
199 1na3_A Designed protein CTPR2; 98.9 1.2E-08 4.2E-13 85.3 11.8 82 534-615 9-90 (91)
200 3ma5_A Tetratricopeptide repea 98.8 1.1E-08 3.8E-13 88.2 8.7 72 666-737 3-74 (100)
201 1klx_A Cysteine rich protein B 98.8 9.7E-08 3.3E-12 87.8 14.9 109 549-665 10-126 (138)
202 3kae_A CDC27, possible protein 98.8 5.3E-08 1.8E-12 88.5 12.5 138 1-141 1-153 (242)
203 1klx_A Cysteine rich protein B 98.8 1E-07 3.5E-12 87.6 14.9 108 618-733 11-126 (138)
204 3ma5_A Tetratricopeptide repea 98.8 3.7E-08 1.3E-12 84.9 10.9 70 632-701 3-72 (100)
205 2kc7_A BFR218_protein; tetratr 98.8 1.1E-08 3.9E-13 87.4 6.9 88 641-736 5-93 (99)
206 3ly7_A Transcriptional activat 98.7 5.4E-07 1.8E-11 95.4 20.3 147 465-636 195-344 (372)
207 3u64_A Protein TP_0956; tetrat 98.7 3.4E-07 1.2E-11 92.9 17.8 83 619-701 180-271 (301)
208 2kc7_A BFR218_protein; tetratr 98.7 2.7E-08 9.4E-13 85.0 8.2 87 607-701 5-92 (99)
209 3n71_A Histone lysine methyltr 98.7 6.1E-08 2.1E-12 108.4 12.9 125 540-664 315-463 (490)
210 3ly7_A Transcriptional activat 98.7 4.2E-07 1.4E-11 96.2 18.3 157 558-739 184-345 (372)
211 3n71_A Histone lysine methyltr 98.7 5.8E-08 2E-12 108.6 12.3 94 639-732 354-463 (490)
212 3u64_A Protein TP_0956; tetrat 98.6 6.4E-07 2.2E-11 91.0 16.5 108 630-737 146-273 (301)
213 1pc2_A Mitochondria fission pr 98.6 3.4E-07 1.2E-11 84.2 11.6 98 652-749 14-116 (152)
214 3bee_A Putative YFRE protein; 98.5 6.1E-07 2.1E-11 76.2 11.4 83 666-748 2-87 (93)
215 4g26_A Pentatricopeptide repea 98.3 6.1E-05 2.1E-09 84.6 25.0 163 537-699 29-204 (501)
216 1pc2_A Mitochondria fission pr 98.3 6E-06 2E-10 75.9 12.4 96 618-713 14-114 (152)
217 4g26_A Pentatricopeptide repea 98.3 0.00011 3.8E-09 82.4 25.5 158 507-664 33-203 (501)
218 3bee_A Putative YFRE protein; 98.3 4E-06 1.4E-10 71.0 9.8 71 530-600 2-75 (93)
219 2v5f_A Prolyl 4-hydroxylase su 98.2 7E-06 2.4E-10 71.1 11.2 71 673-743 8-85 (104)
220 3qww_A SET and MYND domain-con 98.2 4.1E-06 1.4E-10 92.1 11.0 84 615-698 311-410 (433)
221 2v5f_A Prolyl 4-hydroxylase su 98.1 2.7E-05 9.2E-10 67.3 11.9 77 533-609 4-87 (104)
222 3qww_A SET and MYND domain-con 98.1 1.1E-05 3.9E-10 88.5 11.5 86 546-631 310-411 (433)
223 1nzn_A CGI-135 protein, fissio 98.0 2.5E-05 8.5E-10 69.2 10.5 99 651-749 16-119 (126)
224 3qwp_A SET and MYND domain-con 98.0 1.3E-05 4.4E-10 88.2 10.8 88 544-631 297-400 (429)
225 3qwp_A SET and MYND domain-con 98.0 1.7E-05 5.9E-10 87.2 11.7 89 610-698 295-399 (429)
226 1nzn_A CGI-135 protein, fissio 97.6 0.00044 1.5E-08 61.2 11.5 96 618-713 17-117 (126)
227 4h7y_A Dual specificity protei 97.6 0.0013 4.6E-08 59.4 14.1 109 631-740 8-130 (161)
228 4h7y_A Dual specificity protei 97.5 0.0016 5.3E-08 58.9 13.5 107 598-705 9-129 (161)
229 1y8m_A FIS1; mitochondria, unk 97.5 0.002 7E-08 57.8 13.6 82 667-748 36-121 (144)
230 3o48_A Mitochondria fission 1 97.4 0.00081 2.8E-08 59.6 10.5 82 668-749 38-123 (134)
231 3ffl_A Anaphase-promoting comp 97.2 0.0016 5.4E-08 60.2 10.1 132 570-714 22-165 (167)
232 1qsa_A Protein (soluble lytic 97.2 0.26 9E-06 56.1 30.5 289 434-732 8-347 (618)
233 1y8m_A FIS1; mitochondria, unk 96.7 0.028 9.7E-07 50.4 13.5 81 633-713 36-120 (144)
234 3o48_A Mitochondria fission 1 96.6 0.013 4.5E-07 51.9 9.9 79 635-713 39-121 (134)
235 3mkq_A Coatomer beta'-subunit; 96.2 0.13 4.4E-06 60.6 19.3 98 442-560 609-707 (814)
236 3mkq_A Coatomer beta'-subunit; 96.2 0.19 6.6E-06 59.1 20.8 75 538-628 633-707 (814)
237 3txn_A 26S proteasome regulato 96.2 0.51 1.7E-05 50.4 21.6 115 538-652 103-236 (394)
238 4gns_B Protein CSD3, chitin bi 96.0 0.044 1.5E-06 63.6 13.5 114 580-694 260-395 (754)
239 3txn_A 26S proteasome regulato 95.7 0.44 1.5E-05 50.9 18.7 167 500-666 19-211 (394)
240 4gns_B Protein CSD3, chitin bi 95.7 0.091 3.1E-06 60.9 14.3 116 479-594 261-397 (754)
241 1qsa_A Protein (soluble lytic 95.7 1 3.4E-05 51.3 22.7 50 444-497 84-133 (618)
242 4b4t_P 26S proteasome regulato 94.7 1.6 5.3E-05 47.7 19.8 184 446-631 30-247 (445)
243 3mkq_B Coatomer subunit alpha; 94.6 0.46 1.6E-05 44.5 13.0 99 442-558 15-113 (177)
244 2ff4_A Probable regulatory pro 94.6 0.68 2.3E-05 49.6 16.3 112 606-730 119-231 (388)
245 4b4t_P 26S proteasome regulato 94.6 2.3 7.8E-05 46.4 20.7 93 640-732 141-246 (445)
246 3spa_A Mtrpol, DNA-directed RN 94.5 0.56 1.9E-05 55.7 16.1 99 602-700 127-231 (1134)
247 3kae_A CDC27, possible protein 94.1 3.6 0.00012 37.8 19.9 79 441-527 11-89 (242)
248 3mkq_B Coatomer subunit alpha; 94.0 1.1 3.9E-05 41.8 14.1 26 602-627 34-59 (177)
249 2ff4_A Probable regulatory pro 93.7 0.87 3E-05 48.8 14.8 112 574-698 121-233 (388)
250 1zbp_A Hypothetical protein VP 93.5 1.4 4.8E-05 44.0 14.5 57 545-601 8-64 (273)
251 3spa_A Mtrpol, DNA-directed RN 93.3 0.85 2.9E-05 54.2 14.6 99 534-632 127-231 (1134)
252 4ady_A RPN2, 26S proteasome re 93.0 10 0.00035 44.9 23.1 287 440-732 382-698 (963)
253 4fhn_B Nucleoporin NUP120; pro 92.9 4.2 0.00014 50.0 21.0 118 540-661 818-963 (1139)
254 4b4t_S RPN3, 26S proteasome re 92.8 2 6.8E-05 47.2 15.8 63 570-634 233-302 (523)
255 4b4t_S RPN3, 26S proteasome re 92.6 1.6 5.5E-05 47.9 14.8 188 544-740 146-380 (523)
256 3lpz_A GET4 (YOR164C homolog); 92.6 11 0.00036 39.0 30.9 46 432-491 12-60 (336)
257 1zbp_A Hypothetical protein VP 92.5 1 3.5E-05 44.9 12.0 121 611-738 6-134 (273)
258 4fhn_B Nucleoporin NUP120; pro 92.4 2.3 7.8E-05 52.4 17.8 123 528-651 836-986 (1139)
259 4b4t_R RPN7, 26S proteasome re 91.6 0.78 2.7E-05 49.8 10.9 61 535-595 132-195 (429)
260 2wpv_A GET4, UPF0363 protein Y 91.0 15 0.00053 37.5 29.1 46 433-492 14-59 (312)
261 1ya0_A SMG-7 transcript varian 90.8 1.1 3.9E-05 49.3 11.3 79 536-614 154-232 (497)
262 4ady_A RPN2, 26S proteasome re 90.4 2.3 8E-05 50.2 14.0 269 477-751 385-675 (963)
263 1ya0_A SMG-7 transcript varian 90.3 1.3 4.4E-05 48.9 11.1 80 603-682 153-232 (497)
264 2uwj_G Type III export protein 89.8 1.8 6.3E-05 35.8 8.7 74 13-87 17-91 (115)
265 2p58_C Putative type III secre 89.7 1.7 5.9E-05 36.0 8.5 75 12-87 17-92 (116)
266 4b4t_R RPN7, 26S proteasome re 89.5 1.2 4.2E-05 48.3 10.2 101 567-667 130-239 (429)
267 3lpz_A GET4 (YOR164C homolog); 88.5 25 0.00085 36.3 29.1 160 437-629 40-214 (336)
268 2wpv_A GET4, UPF0363 protein Y 88.4 24 0.00083 36.0 26.7 108 437-558 38-158 (312)
269 1wy6_A Hypothetical protein ST 86.6 8.5 0.00029 34.1 11.4 128 431-562 6-153 (172)
270 4gq2_M Nucleoporin NUP120; bet 80.4 8.3 0.00028 46.3 12.2 98 33-130 808-926 (950)
271 2pm7_A Protein WEB1, protein t 78.6 6.7 0.00023 41.8 9.4 110 5-129 159-276 (399)
272 3lvg_A Clathrin heavy chain 1; 77.8 1.8E-05 6.2E-10 84.9 -33.4 101 574-683 176-276 (624)
273 3t5v_B Nuclear mRNA export pro 74.8 3.5 0.00012 44.7 6.0 70 72-141 184-266 (455)
274 3esl_A Checkpoint serine/threo 63.6 34 0.0012 32.4 9.4 67 567-634 79-147 (202)
275 3esl_A Checkpoint serine/threo 58.2 1.3E+02 0.0043 28.5 12.4 49 618-666 95-145 (202)
276 4gq2_M Nucleoporin NUP120; bet 57.0 72 0.0025 38.1 13.2 107 608-718 816-950 (950)
277 3t5x_A PCI domain-containing p 55.9 13 0.00044 35.5 5.2 47 95-141 6-54 (203)
278 3mzk_B Protein transport prote 55.0 55 0.0019 35.2 10.4 117 5-127 166-304 (441)
279 2ijq_A Hypothetical protein; s 52.8 70 0.0024 29.1 9.2 64 432-495 32-104 (161)
280 3mv2_A Coatomer subunit alpha; 52.7 1.6E+02 0.0056 29.9 12.9 40 711-750 214-253 (325)
281 2qx5_A Nucleoporin NIC96; mRNA 51.0 1.9E+02 0.0066 32.7 14.6 16 681-696 549-564 (661)
282 3mv2_A Coatomer subunit alpha; 49.0 1.5E+02 0.005 30.2 11.8 31 430-460 112-142 (325)
283 3ax2_A Mitochondrial import re 48.8 38 0.0013 26.3 5.8 36 708-743 21-56 (73)
284 2wvi_A Mitotic checkpoint seri 44.1 1.1E+02 0.0039 27.8 9.3 48 587-634 79-128 (164)
285 2qx5_A Nucleoporin NIC96; mRNA 43.4 2.9E+02 0.01 31.2 14.5 30 707-737 539-570 (661)
286 3ax2_A Mitochondrial import re 42.8 51 0.0017 25.6 5.7 34 470-503 21-54 (73)
287 3t5v_B Nuclear mRNA export pro 42.3 1.6E+02 0.0053 31.8 11.6 89 581-669 139-254 (455)
288 1wy6_A Hypothetical protein ST 41.7 1.9E+02 0.0064 25.7 14.4 27 542-568 15-41 (172)
289 2w2u_A Hypothetical P60 katani 39.3 34 0.0012 27.4 4.4 17 580-596 31-47 (83)
290 3mkr_B Coatomer subunit alpha; 38.9 3.2E+02 0.011 27.7 12.5 30 432-461 102-131 (320)
291 2v6y_A AAA family ATPase, P60 38.4 35 0.0012 27.2 4.4 17 580-596 23-39 (83)
292 4a1g_A Mitotic checkpoint seri 38.1 1.1E+02 0.0037 27.5 8.0 90 554-649 48-148 (152)
293 2ijq_A Hypothetical protein; s 35.1 1.3E+02 0.0044 27.3 8.1 59 674-732 36-103 (161)
294 1wfd_A Hypothetical protein 15 35.0 1.8E+02 0.0061 23.5 9.3 26 432-457 15-40 (93)
295 3snx_A SUSD homolog, putative 34.8 48 0.0016 35.9 6.2 57 78-134 165-224 (460)
296 1om2_A Protein (mitochondrial 33.2 60 0.0021 26.6 4.9 28 675-702 25-52 (95)
297 2ynq_A ESSB; membrane protein, 32.5 1.5E+02 0.005 26.8 7.7 96 37-139 10-110 (161)
298 3lvg_A Clathrin heavy chain 1; 31.9 0.21 7E-06 54.2 -12.7 167 438-656 150-324 (624)
299 3ltm_A Alpha-REP4; protein eng 31.0 3.1E+02 0.011 25.0 17.9 170 568-751 33-202 (211)
300 3t5x_A PCI domain-containing p 30.7 90 0.0031 29.5 6.7 33 467-499 15-47 (203)
301 3re2_A Predicted protein; meni 30.2 3.1E+02 0.011 28.3 10.5 66 600-665 253-325 (472)
302 3re2_A Predicted protein; meni 29.5 2.7E+02 0.0091 28.8 9.9 44 553-596 276-324 (472)
303 3mkr_B Coatomer subunit alpha; 29.3 4.6E+02 0.016 26.5 12.4 38 711-748 205-242 (320)
304 4a5x_A MITD1, MIT domain-conta 29.2 2.2E+02 0.0074 22.7 9.4 26 432-457 16-41 (86)
305 2w2u_A Hypothetical P60 katani 28.9 2.2E+02 0.0074 22.5 8.7 28 429-456 16-43 (83)
306 3lxu_X Tripeptidyl-peptidase 2 28.7 3.6E+02 0.012 33.1 12.7 45 570-614 1109-1153(1354)
307 3lew_A SUSD-like carbohydrate 28.0 73 0.0025 34.8 6.3 56 78-133 179-235 (495)
308 2p58_C Putative type III secre 27.4 2.7E+02 0.0092 23.2 9.1 47 676-727 46-92 (116)
309 1wfd_A Hypothetical protein 15 26.7 70 0.0024 26.1 4.4 16 580-595 27-42 (93)
310 2uwj_G Type III export protein 26.4 64 0.0022 26.8 3.9 44 11-58 48-91 (115)
311 2v6y_A AAA family ATPase, P60 25.7 2.4E+02 0.0084 22.1 8.3 25 432-456 11-35 (83)
312 4gq4_A Menin; tumor suppressor 25.4 3.8E+02 0.013 28.3 10.3 44 553-596 283-331 (489)
313 1om2_A Protein (mitochondrial 25.3 77 0.0026 26.0 4.3 28 471-498 25-52 (95)
314 3u84_A Menin; MLL, JUND, ledgf 25.0 4E+02 0.014 28.1 10.4 64 600-663 275-345 (550)
315 4gq4_A Menin; tumor suppressor 24.5 5.6E+02 0.019 27.0 11.4 65 600-664 260-331 (489)
316 2crb_A Nuclear receptor bindin 23.9 1E+02 0.0035 25.0 4.6 26 672-697 17-42 (97)
317 2rpa_A Katanin P60 ATPase-cont 23.9 61 0.0021 25.5 3.3 26 707-732 15-40 (78)
318 2crb_A Nuclear receptor bindin 23.8 1.2E+02 0.004 24.7 4.9 19 438-456 21-39 (97)
319 2rpa_A Katanin P60 ATPase-cont 23.5 61 0.0021 25.5 3.2 25 470-494 16-40 (78)
320 3u84_A Menin; MLL, JUND, ledgf 23.5 3.7E+02 0.013 28.3 9.8 44 553-596 298-346 (550)
321 2cpt_A SKD1 protein, vacuolar 23.3 79 0.0027 27.0 4.2 16 580-595 30-45 (117)
322 4b4t_O 26S proteasome regulato 23.3 2.3E+02 0.0077 29.7 8.9 60 673-732 130-197 (393)
323 2npm_A 14-3-3 domain containin 22.5 5.5E+02 0.019 25.1 16.4 45 535-579 29-77 (260)
324 3lxu_X Tripeptidyl-peptidase 2 22.4 1.2E+03 0.04 28.8 18.1 46 535-580 1108-1153(1354)
325 2br9_A 14-3-3E, 14-3-3 protein 22.0 5.3E+02 0.018 24.7 14.7 164 535-698 6-201 (234)
326 2v6x_A Vacuolar protein sortin 22.0 2.9E+02 0.0099 21.7 9.5 26 432-457 13-38 (85)
327 4aez_C MAD3, mitotic spindle c 21.2 4.4E+02 0.015 25.2 9.4 33 702-734 148-180 (223)
328 4aez_C MAD3, mitotic spindle c 21.0 3.6E+02 0.012 25.8 8.7 30 670-699 150-179 (223)
329 2cpt_A SKD1 protein, vacuolar 21.0 3.8E+02 0.013 22.6 10.0 27 431-457 17-43 (117)
330 1o9d_A 14-3-3-like protein C; 20.8 6E+02 0.02 24.8 16.4 29 536-564 10-38 (260)
331 3qnk_A Putative lipoprotein; a 20.7 90 0.0031 34.2 5.2 54 78-131 158-212 (517)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-39 Score=378.20 Aligned_cols=484 Identities=17% Similarity=0.205 Sum_probs=421.2
Q ss_pred hHHHHHHHHHHhhccchhHHHHHHhhhhcCCCchhhHHHHHHHhhcCCHHHHHHHhccC----CCcchhHHHHHHHHhcC
Q 004340 3 GILTDCVQNSLRYFMYRNAIFLCERLCAEFPSEVNLQLLATCYLQNNQAYAAYNILKGT----QMALSRYLFAVACYQMD 78 (760)
Q Consensus 3 ~~l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~~~llA~~~~~~~~~~~a~~~l~~~----~~~~~~yl~a~c~~~l~ 78 (760)
..+..+|..++.++.|+.|+.+.+++....|++...+.+|.+|++.|++..|..+++.. .++.+.+.+|.|+.+.|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 35778999999999999999999999998998888999999999999999999999865 57789999999999999
Q ss_pred ChhHHHHhhCCCCCC-------------CccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCcchHHHHHHHhcC
Q 004340 79 LLSEAEAALSPVNEP-------------SAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEELCMLG 145 (760)
Q Consensus 79 ~~~ea~~~l~~~~~~-------------~~~~p~~a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~~w~af~~Lc~~g 145 (760)
++++|+..+...... ....|..+.+++.+|.+|.+.|+.++|.++|.++++.+|..|+++..|+.+.
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhh
Confidence 999999999742111 1123445779999999999999999999999999999999999999998765
Q ss_pred CccchhHHhHHhHHHHHHHHhhhcccccccCCCCCCCCccccCCCCCCCCCChhhhhhhhhcccCCCCCCCCcccccccc
Q 004340 146 AAEEATAVFSEAAALCIQKQYLQNGLATQNLYLPNEDRNLVSSKSAGTEDISPRQLKHMQANNLRDIPGNYHGAAVSAAA 225 (760)
Q Consensus 146 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (760)
....... ......+.+ ..
T Consensus 245 ~~~~~~~-~~~~~~l~~---------------------------------------~~---------------------- 262 (597)
T 2xpi_A 245 LLTADEE-WDLVLKLNY---------------------------------------ST---------------------- 262 (597)
T ss_dssp CSCHHHH-HHHHHHSCT---------------------------------------HH----------------------
T ss_pred cccchhH-HHHHHhcCC---------------------------------------cc----------------------
Confidence 4421111 000000000 00
Q ss_pred cCCCCCCCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCccccccccCCccccccCCcccccccc
Q 004340 226 ASQPLNGGPSNASFYNTPSPITTQLSGVAPPPLCRNLQPNGPNLNMLGTDSSPKSTISSTIQAPRRKFVDEGKLRKISGR 305 (760)
Q Consensus 226 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (760)
+ ..
T Consensus 263 --------------------------------------------------------~-----------~~---------- 265 (597)
T 2xpi_A 263 --------------------------------------------------------Y-----------SK---------- 265 (597)
T ss_dssp --------------------------------------------------------H-----------HG----------
T ss_pred --------------------------------------------------------c-----------cc----------
Confidence 0 00
Q ss_pred cccCCCCCCcccccccccCCCCCccccccCCCCcCCCcccCCCCCccccccccccccCCCCCccccccCCCCCCCCcccc
Q 004340 306 LFSDSGPRRSTRLAGEAGANANMSTTTVAGNGTTNSSKYLGGSKLSSVALRSVTLRKGQSWANENIDEGMRNEPFDDSRA 385 (760)
Q Consensus 306 ~~~~~~~r~s~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (760)
T Consensus 266 -------------------------------------------------------------------------------- 265 (597)
T 2xpi_A 266 -------------------------------------------------------------------------------- 265 (597)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCcccccCCCCCCccccccCCcccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCC
Q 004340 386 NTASTVSSSFPTSDTRSAVQEGTTVPIGGTAMNGSRIMTGASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT 465 (760)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~ 465 (760)
........++.. .+..+...|++++|+.+|+++... |.+
T Consensus 266 --------------------------------------~~~~~~~~~~~~--~~~~~~~~g~~~~A~~~~~~~~~~-~~~ 304 (597)
T 2xpi_A 266 --------------------------------------EDAAFLRSLYML--KLNKTSHEDELRRAEDYLSSINGL-EKS 304 (597)
T ss_dssp --------------------------------------GGHHHHHHHHHT--TSCTTTTHHHHHHHHHHHHTSTTG-GGC
T ss_pred --------------------------------------chHHHHHHHHHH--HHHHHcCcchHHHHHHHHHHhhcC-Cch
Confidence 000000001111 112224557889999999999887 678
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (760)
Q Consensus 466 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~ 545 (760)
..++..+|.+|...|++++|+.+|+++++.+|.+..++..++.++...|+.++|..+++++++..|.++.+|..+|.+|.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHF 625 (760)
Q Consensus 546 ~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l 625 (760)
..|++++|+++|+++++.+|.+..+|..+|.+|...|++++|+..|+++++..|.+..+|..+|.+|...|++++|+.+|
T Consensus 385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 626 RMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA------DKKN-PLPMYQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 626 ~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~------~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
+++++..|.++.++..+|.++.+.|++++|+++|+++++. +|.. ..++..+|.+|...|++++|++.|+++++
T Consensus 465 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 5554 67899999999999999999999999999
Q ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004340 699 YAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAA 746 (760)
Q Consensus 699 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~ 746 (760)
..|+++.++..+|.+|...|++++|+++|+++++++|++..++..+..
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999988777664
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.9e-36 Score=332.06 Aligned_cols=312 Identities=17% Similarity=0.194 Sum_probs=295.3
Q ss_pred HHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH
Q 004340 440 YRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKL 519 (760)
Q Consensus 440 ~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a 519 (760)
..+...|++++|+..|++++...|+...++..+|.++...|++++|+..|+++++.+|+...++..++.++...|++++|
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHH
Confidence 33456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004340 520 SYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA 599 (760)
Q Consensus 520 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p 599 (760)
...+.+++..+|.++.+|..+|.++...|++++|+..|++++.++|++..++..+|.++...|++++|+..|++++..+|
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 004340 600 RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI 679 (760)
Q Consensus 600 ~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~ 679 (760)
++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|.++.++..+|.+
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH-HHhcC
Q 004340 680 LLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAA-IEKLH 751 (760)
Q Consensus 680 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~-l~~l~ 751 (760)
+...|++++|+..++++++..|++..++..+|.+|...|++++|+.+|+++++++|++.+++..+.. +..++
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999988877664 44443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.3e-35 Score=325.60 Aligned_cols=282 Identities=17% Similarity=0.163 Sum_probs=272.8
Q ss_pred HHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHH
Q 004340 438 EGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDM 517 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~ 517 (760)
.|..+...|++++|+..|.+++..+|+...++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++.
T Consensus 107 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34445677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 518 KLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597 (760)
Q Consensus 518 ~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~ 597 (760)
+|...++++++.+|..+.+|..+|.++...|++++|+..|++++.++|++..++..+|.++...|++++|+..|+++++.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 004340 598 DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (760)
Q Consensus 598 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la 677 (760)
+|.+..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++..|++..++..+|
T Consensus 267 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Q 004340 678 NILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNM 719 (760)
Q Consensus 678 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 719 (760)
.++...|++++|+..|++++++.|+.+.+++.+|.++..+|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999999998874
No 4
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=3.9e-32 Score=291.95 Aligned_cols=316 Identities=10% Similarity=0.052 Sum_probs=299.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 511 (760)
+-.++..|..++..|++++|+..|++++..+|.++.++..+|.+++..|++++|+..|+++++.+|.+..++..++.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 512 HLKEDMKLSYLAQELITTDR---LAPQSWCAM------------GNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGH 576 (760)
Q Consensus 512 ~l~~~~~a~~~~~~~l~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~ 576 (760)
..|++++|...++++++.+| .++.++..+ |.++...|++++|+.++++++..+|.+..++..+|.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999 888888877 789999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHH
Q 004340 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMS------------YLGT 644 (760)
Q Consensus 577 ~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~------------~la~ 644 (760)
++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|+++++..|++..++. .+|.
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988654 3488
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Q 004340 645 AMHALKRSGEAIEMMEKAILADKKNPL----PMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMH 720 (760)
Q Consensus 645 ~~~~~g~~~eAl~~l~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 720 (760)
++...|++++|+..++++++..|.++. ++..+|.++...|++++|+..++++++..|+++.+++.+|.++...|++
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 322 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMY 322 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH
Confidence 899999999999999999999999874 4667999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004340 721 EKAMLHFGLALDLKPSATDVATIKAAI 747 (760)
Q Consensus 721 ~~A~~~~~~al~l~p~~~~a~~~l~~l 747 (760)
++|+.+|+++++++|++..+...+..+
T Consensus 323 ~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 323 DEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 999999999999999999887766644
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=310.38 Aligned_cols=284 Identities=17% Similarity=0.175 Sum_probs=267.6
Q ss_pred CCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHH-----H--C-------CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 004340 463 YNTGWVLSQVGKAYFE---VVDYLEAERAFTLARR-----A--S-------PYSLEGMDIYSTVLYHLKEDMKLSYLAQE 525 (760)
Q Consensus 463 p~~~~~l~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~l~~l~~~~~a~~~~~~ 525 (760)
|.++.+++.+|.+++. .|++++|+.+|+++++ . . |....++..++.++...|++.+|..++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6778999999999887 8999999999999999 5 3 44567888999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004340 526 LITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSW 605 (760)
Q Consensus 526 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~ 605 (760)
+++.+|. +.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++..|.+..++
T Consensus 263 ~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 341 (514)
T 2gw1_A 263 AIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341 (514)
T ss_dssp HHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH
T ss_pred HHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH------HHHHHHHH
Q 004340 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPL------PMYQKANI 679 (760)
Q Consensus 606 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~------~~~~la~~ 679 (760)
..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+.+|++++...|.++. ++..+|.+
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888755 99999999
Q ss_pred HHH---cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004340 680 LLS---LEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAI 747 (760)
Q Consensus 680 ~~~---~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l 747 (760)
+.. .|++++|+..|++++...|+++.++..+|.+|...|++++|+.+|+++++++|++.++...+..+
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999999999999999887655543
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-32 Score=312.08 Aligned_cols=281 Identities=15% Similarity=0.098 Sum_probs=270.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc
Q 004340 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (760)
Q Consensus 435 ~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~ 514 (760)
++..+..+...|++++|+.+|++++...|.+..++..++.++...|++++|+..|+++++..|.+...+..++.++...|
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc
Confidence 34456667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (760)
Q Consensus 515 ~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~a 594 (760)
++++|..+++++++.+|.+..+|..+|.+|...|++++|+++|++++...|.+..++..+|.+|...|++++|+.+|+++
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004340 595 LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI------SPHS-SVIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (760)
Q Consensus 595 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~-~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p 667 (760)
++..|.+..+|..+|.+|...|++++|+.+|+++++. +|+. ..++..+|.++...|++++|++.|+++++..|
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999998 5654 78999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 668 KNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYK 715 (760)
Q Consensus 668 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~ 715 (760)
+++.++..+|.+|...|++++|+++|+++++++|+++.++..++.+|.
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998874
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.5e-31 Score=295.38 Aligned_cols=315 Identities=10% Similarity=0.060 Sum_probs=298.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 511 (760)
...++..|..++..|++++|+..|++++...|.++.++..+|.+++..|++++|+..|+++++.+|.+..++..++.++.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34455667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 512 HLKEDMKLSYLAQELITTDRLAP---QSWCAM------------GNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGH 576 (760)
Q Consensus 512 ~l~~~~~a~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~ 576 (760)
..|++++|...++++++.+|.++ .+|..+ |.++...|++++|+.+|++++...|.+..++..+|.
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 185 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999988 777665 666999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HH
Q 004340 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYL------------GT 644 (760)
Q Consensus 577 ~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l------------a~ 644 (760)
+|...|++++|+..|+++++.+|.+..++..+|.+|...|++++|+..|++++...|++...+..+ |.
T Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887666 99
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Q 004340 645 AMHALKRSGEAIEMMEKAILADKKNPL----PMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMH 720 (760)
Q Consensus 645 ~~~~~g~~~eAl~~l~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 720 (760)
++...|++++|+.+|+++++..|.++. ++..+|.++...|++++|+..+++++++.|+++.++..+|.++...|++
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY 345 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999854 7888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHH
Q 004340 721 EKAMLHFGLALDLKPSATDVATIKAA 746 (760)
Q Consensus 721 ~~A~~~~~~al~l~p~~~~a~~~l~~ 746 (760)
++|+.+|+++++++|++..++..+..
T Consensus 346 ~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 346 DEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 99999999999999999988776663
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=5.5e-32 Score=308.90 Aligned_cols=295 Identities=17% Similarity=0.189 Sum_probs=200.4
Q ss_pred ChHHHHHHHhcccccCCCCHHHHHHHHHHH--------HHccCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHH
Q 004340 447 RCKDALDVYLKLPHKHYNTGWVLSQVGKAY--------FEVVDYLEAERAFTLARRASPYSLE-------GMDIYSTVLY 511 (760)
Q Consensus 447 ~~~eAi~~l~~~~~~~p~~~~~l~~la~~~--------~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~l~ 511 (760)
+...++..+.+.....+........++..+ ...|++++|+..|+++++.+|.+.. ++..++.++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 344444444444444444333333333332 2234666666666666666666644 3445555666
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSY 591 (760)
Q Consensus 512 ~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~ 591 (760)
..|++.+|...+++++..+|. +.+|+.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 666667777777777777776 6777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-
Q 004340 592 QSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP- 670 (760)
Q Consensus 592 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~- 670 (760)
+++++.+|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+..|+++++..|.+.
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777777665443
Q ss_pred -----HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 671 -----LPMYQKANILLSL----------EKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 671 -----~~~~~la~~~~~~----------g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
..++.+|.++... |++++|+.+|+++++..|+++.++..+|.+|...|++++|+.+|+++++++|
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 2245566777777 7777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHH
Q 004340 736 SATDVAT 742 (760)
Q Consensus 736 ~~~~a~~ 742 (760)
+..+...
T Consensus 494 ~~~~~~~ 500 (537)
T 3fp2_A 494 TMDEKLQ 500 (537)
T ss_dssp -CHHHHH
T ss_pred CcHHHHH
Confidence 7665533
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=277.55 Aligned_cols=296 Identities=18% Similarity=0.236 Sum_probs=277.3
Q ss_pred cccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 004340 457 KLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQS 536 (760)
Q Consensus 457 ~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~ 536 (760)
..+...+.++.++..+|..++..|+|++|+.+|+++++.+|.+...+..++.+++..|++.+|..+++++++.+|.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 92 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS 92 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence 34445567778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004340 537 WCAMGNCYSLQK-DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ 615 (760)
Q Consensus 537 ~~~la~~~~~~g-~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 615 (760)
|+.+|.++...| ++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcCCH
Q 004340 616 EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD---------KKNPLPMYQKANILLSLEKF 686 (760)
Q Consensus 616 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~---------p~~~~~~~~la~~~~~~g~~ 686 (760)
|++++|+.+++++++..|.++.++..+|.++...|++++|+.+++++++.. |..+.++..+|.++...|++
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999986 66778999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH-HH-hcCC
Q 004340 687 DEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAA-IE-KLHV 752 (760)
Q Consensus 687 ~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~-l~-~l~~ 752 (760)
++|+.+++++++..|+++.++..+|.++...|++++|+.+|+++++++|++..++..+.. ++ ..++
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999988887774 53 3443
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=1.1e-29 Score=289.90 Aligned_cols=326 Identities=15% Similarity=0.146 Sum_probs=293.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY 511 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 511 (760)
...++..|..++..|++++|+..|++++..+|+++.++..+|.+|...|++++|+..|+++++.+|.+..++..++.++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 44556788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHH--------------------------------------------------------------------
Q 004340 512 HLKEDMKLSYLA-------------------------------------------------------------------- 523 (760)
Q Consensus 512 ~l~~~~~a~~~~-------------------------------------------------------------------- 523 (760)
..|++.+|...+
T Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 998877776543
Q ss_pred -----------------------------------------HHHHHhCCCCHH-------HHHHHHHHHHhcCCHHHHHH
Q 004340 524 -----------------------------------------QELITTDRLAPQ-------SWCAMGNCYSLQKDHETALK 555 (760)
Q Consensus 524 -----------------------------------------~~~l~~~p~~~~-------~~~~la~~~~~~g~~~~A~~ 555 (760)
+++++.+|.++. +++.+|.++...|++++|+.
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 334455666644 57788889999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004340 556 NFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (760)
Q Consensus 556 ~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 635 (760)
+|++++..+|. ..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+
T Consensus 265 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 265 LLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp HHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH------HHHHH
Q 004340 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES------GVYAL 709 (760)
Q Consensus 636 ~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~------~~~~~ 709 (760)
..++..+|.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|+++++..|... ..++.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876543 34677
Q ss_pred HHHHHHHc----------CCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHhcCCCCcccc
Q 004340 710 MGKIYKRR----------NMHEKAMLHFGLALDLKPSATDVATIKA-AIEKLHVPDEIED 758 (760)
Q Consensus 710 la~~~~~~----------g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~l~~~deaee 758 (760)
+|.++... |++++|+.+|+++++++|++..++..++ .+...|+.++|.+
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 78999999 9999999999999999999998877666 5677887776643
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=7.4e-29 Score=266.30 Aligned_cols=294 Identities=12% Similarity=0.082 Sum_probs=276.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCY 544 (760)
Q Consensus 465 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~ 544 (760)
++..++.+|.+++..|++++|+..|+++++.+|.+..++..++.++...|++.+|...++++++.+|.++.+|..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 545 SLQKDHETALKNFQRAVQLNP---RFAYGHTLC------------GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (760)
Q Consensus 545 ~~~g~~~~A~~~~~kal~~~p---~~~~a~~~l------------a~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la 609 (760)
...|++++|+..|++++..+| .+..++..+ |.++...|++++|+.+++++++..|.+..++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 888888777 78999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH------------HHH
Q 004340 610 MVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY------------QKA 677 (760)
Q Consensus 610 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~------------~la 677 (760)
.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++..|.+..++. .+|
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987654 448
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHhcCC
Q 004340 678 NILLSLEKFDEALEVLEELKEYAPRESG----VYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA-AIEKLHV 752 (760)
Q Consensus 678 ~~~~~~g~~~eA~~~l~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~l~~ 752 (760)
.++...|++++|+..++++++..|+++. ++..+|.++...|++++|+.+|+++++++|++..++..++ .+...++
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999999874 4677999999999999999999999999999998877666 5677888
Q ss_pred CCcccc
Q 004340 753 PDEIED 758 (760)
Q Consensus 753 ~deaee 758 (760)
+++|.+
T Consensus 322 ~~~A~~ 327 (359)
T 3ieg_A 322 YDEAIQ 327 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=2.9e-29 Score=279.78 Aligned_cols=310 Identities=12% Similarity=0.058 Sum_probs=280.2
Q ss_pred HHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 004340 449 KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELIT 528 (760)
Q Consensus 449 ~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~ 528 (760)
..+...+.+++..+|.++.+++.+|..++..|++++|+.+|+++++.+|.+..++..++.++...|++.+|...++++++
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44556677778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHH
Q 004340 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA---YGHTLC------------GHEYVALEDFENGIRSYQS 593 (760)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~---~a~~~l------------a~~~~~~g~~e~A~~~~~~ 593 (760)
.+|.++.++..+|.+|...|++++|+.+|++++..+|.+. .++..+ |.++...|++++|+.+|++
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 776555 6679999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 004340 594 ALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (760)
Q Consensus 594 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~ 673 (760)
+++..|.+..++..+|.+|...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..|++++...|++...+
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 248 (450)
T 2y4t_A 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 248 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHH------------HHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 674 YQK------------ANILLSLEKFDEALEVLEELKEYAPRES----GVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 674 ~~l------------a~~~~~~g~~~eA~~~l~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
..+ |.++...|++++|+.+|++++++.|+++ .++..+|.++...|++++|+.+|++++.++|++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 328 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 666 9999999999999999999999999985 478999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHhcCCCCcccc
Q 004340 738 TDVATIKA-AIEKLHVPDEIED 758 (760)
Q Consensus 738 ~~a~~~l~-~l~~l~~~deaee 758 (760)
..++..++ .+...+++++|.+
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHH
Confidence 88877666 5677887777653
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=269.02 Aligned_cols=286 Identities=14% Similarity=0.111 Sum_probs=274.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc-
Q 004340 436 LGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK- 514 (760)
Q Consensus 436 l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~- 514 (760)
+..|..++..|++++|+.+|++++..+|.+..++..++.+++..|++++|+.+|+++++.+|.+..++..++.++...|
T Consensus 26 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 26 VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhh
Confidence 4566677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 515 EDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (760)
Q Consensus 515 ~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~a 594 (760)
++++|..++++++..+|.++.+|..+|.++...|++++|+.+|++++...|....++..+|.++...|++++|+.+|+++
T Consensus 106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004340 595 LRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS---------PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (760)
Q Consensus 595 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~---------p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~ 665 (760)
++..|.+..++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.+|+++++.
T Consensus 186 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999986 667889999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHcCCHH
Q 004340 666 DKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIY-KRRNMHE 721 (760)
Q Consensus 666 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~-~~~g~~~ 721 (760)
.|.++.++..+|.++...|++++|+.+|++++++.|+++.++..++.++ ...|+.+
T Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999999999999999999999999999998 5666654
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.8e-30 Score=288.08 Aligned_cols=322 Identities=16% Similarity=0.098 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 004340 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH 512 (760)
Q Consensus 433 l~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 512 (760)
-.++..|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3455667777777888888888887777777 477777788888888888888888888888888777777777777777
Q ss_pred ccCHHHHHHHHHHHHHhCC-------------------------------------------------------------
Q 004340 513 LKEDMKLSYLAQELITTDR------------------------------------------------------------- 531 (760)
Q Consensus 513 l~~~~~a~~~~~~~l~~~p------------------------------------------------------------- 531 (760)
.|++++|...+++++..+|
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 7777777776666655543
Q ss_pred ---------------------------------------------------------------------CCHHHHHHHHH
Q 004340 532 ---------------------------------------------------------------------LAPQSWCAMGN 542 (760)
Q Consensus 532 ---------------------------------------------------------------------~~~~~~~~la~ 542 (760)
..+.+|+.+|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 12334445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004340 543 CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSE 622 (760)
Q Consensus 543 ~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 622 (760)
++...|++++|+.+|++++..+|. ..++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 555555555555555555555555 5555555555555555555555555555555555555555666666666666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 623 HHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 623 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
.+|+++++..|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+..+++++...|+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 66666666666655566666666666666666666666666666666666666666666666666666666666665555
Q ss_pred CHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHhcCCCCcc
Q 004340 703 ESG------VYALMGKIYKR---RNMHEKAMLHFGLALDLKPSATDVATIKA-AIEKLHVPDEI 756 (760)
Q Consensus 703 ~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~l~~~dea 756 (760)
++. ++..+|.++.. .|++++|+.+|++++.++|++..++..++ .+...+++++|
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence 433 56666666666 66666666666666666666655544444 34455554444
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=2.1e-29 Score=272.95 Aligned_cols=291 Identities=14% Similarity=0.119 Sum_probs=266.3
Q ss_pred HHhcCChHHHHH-HHhcccccCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Q 004340 442 MSCMYRCKDALD-VYLKLPHKHYNTG----WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (760)
Q Consensus 442 ~~~~g~~~eAi~-~l~~~~~~~p~~~----~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~ 516 (760)
+...|+|++|+. .|.+++...|.++ ..++.+|.+++..|++++|+.+|+++++.+|.+..++..++.++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 345689999999 9999888777653 56889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHH
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHT----------------LCGHEYVA 580 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~----------------~la~~~~~ 580 (760)
++|...++++++.+|.++.++..+|.++...|++++|+..|++++...|.....+. .++.++ .
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 99999999999999999999999999999999999999999999999998877664 466666 9
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004340 581 LEDFENGIRSYQSALRVDAR--HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEM 658 (760)
Q Consensus 581 ~g~~e~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~ 658 (760)
.|++++|+.+|+++++.+|. ...++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 659 MEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE-----------SGVYALMGKIYKRRNMHEKAMLHF 727 (760)
Q Consensus 659 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~ 727 (760)
|+++++..|.++.++..+|.++...|++++|+.+|++++.+.|+. ..++..+|.+|..+|++++|..++
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 999999999999999999999999999999999999999999887 899999999999999999999998
Q ss_pred HHHHhc
Q 004340 728 GLALDL 733 (760)
Q Consensus 728 ~~al~l 733 (760)
+++++.
T Consensus 354 ~~~l~~ 359 (368)
T 1fch_A 354 ARDLST 359 (368)
T ss_dssp TTCHHH
T ss_pred HHHHHH
Confidence 877664
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=8.9e-29 Score=268.49 Aligned_cols=270 Identities=14% Similarity=0.114 Sum_probs=247.5
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 463 YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGN 542 (760)
Q Consensus 463 p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~ 542 (760)
+.+...++.+|.+++..|++++|+.+|+++++.+|.+..++..++.++...|++.+|...++++++.+|.++.+|..+|.
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34455699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 004340 543 CYSLQKDHETALKNFQRAVQLNPRFAYGHTL----------CGHEYVALEDFENGIRSYQSALRVDAR--HYNSWYGLGM 610 (760)
Q Consensus 543 ~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~----------la~~~~~~g~~e~A~~~~~~al~~~p~--~~~a~~~la~ 610 (760)
+|...|++++|+.+|++++.++|....++.. +|.++...|++++|+.+|+++++.+|. +..++..+|.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999999998876655554 499999999999999999999999999 8999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 004340 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEAL 690 (760)
Q Consensus 611 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 690 (760)
+|...|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|+++++..|+++.++..+|.+|...|++++|+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 691 EVLEELKEYAPR------------ESGVYALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 691 ~~l~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
.+|++++++.|+ ...+|..++.++..+|+.+.|.....+.+.
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 999999999876 367899999999999999999887766443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=3.1e-28 Score=263.65 Aligned_cols=300 Identities=13% Similarity=0.086 Sum_probs=254.1
Q ss_pred ChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHH-HHHHHHHHCCCCH----HHHHHHHHHHHHccCHHHHHH
Q 004340 447 RCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAER-AFTLARRASPYSL----EGMDIYSTVLYHLKEDMKLSY 521 (760)
Q Consensus 447 ~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~l~~l~~~~~a~~ 521 (760)
.+..+...+..+....| .++...|+|++|+. .|++++...|.++ ..+..+|.++...|++.+|..
T Consensus 16 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 85 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDA----------EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVL 85 (368)
T ss_dssp ----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCc----------hhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHH
Confidence 44445555554444333 25667799999999 9999999888764 568899999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004340 522 LAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH 601 (760)
Q Consensus 522 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~ 601 (760)
+++++++.+|.++.+|+.+|.++...|++++|+.+|++++.++|.+..++..+|.++...|++++|+..|++++...|.+
T Consensus 86 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 165 (368)
T 1fch_A 86 LFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165 (368)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004340 602 YNSWY----------------GLGMVYLRQEKFEFSEHHFRMAFQISPH--SSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (760)
Q Consensus 602 ~~a~~----------------~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~eAl~~l~~al 663 (760)
...+. .++.++ ..|++++|+.+|+++++..|. ++.++..+|.++...|++++|+.+|++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp GGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76654 466666 999999999999999999999 89999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh------
Q 004340 664 LADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA------ 737 (760)
Q Consensus 664 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~------ 737 (760)
...|.++.++..+|.++...|++++|+..|++++++.|+++.++..+|.+|...|++++|+.+|++++.+.|++
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -----HHHHHHHH-HHHhcCCCCccc
Q 004340 738 -----TDVATIKA-AIEKLHVPDEIE 757 (760)
Q Consensus 738 -----~~a~~~l~-~l~~l~~~deae 757 (760)
..++..+. .+..+|+.++|.
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHH
Confidence 66666555 678889888775
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=1.6e-27 Score=252.90 Aligned_cols=270 Identities=14% Similarity=0.161 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 004340 468 VLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQ 547 (760)
Q Consensus 468 ~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~ 547 (760)
.++.+|..++..|++++|+.+|+++++.+|.+..++..++.++...|++.+|...++++++.+|.++.++..+|.++...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 34455555555566666666666665555555555555565666666666666666666666666677777888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 548 KDHETALKNFQRAVQLNPRFAYGHTLC--------------GH-EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (760)
Q Consensus 548 g~~~~A~~~~~kal~~~p~~~~a~~~l--------------a~-~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~ 612 (760)
|++++|+..|++++..+|.....+..+ +. ++...|++++|+.+++++++..|.+..++..+|.++
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLY 182 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 888888888888888887777666665 55 688889999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004340 613 LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEV 692 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 692 (760)
...|++++|+.+++++++.+|.+..++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 693 LEELKEYAPR------------ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 693 l~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
+++++...|+ ...++..+|.++..+|++++|...++++++..|+.
T Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 9999999998 78899999999999999999999998887766544
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=7.6e-27 Score=262.28 Aligned_cols=302 Identities=14% Similarity=0.062 Sum_probs=242.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFE---VVDYLEAERAFTLARRASPYSLEGMDIYST 508 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 508 (760)
++..++.++..+..++|++|+..|++++..+|+++.++..+|.+++. .+++++|+..|+++++++|.+..++..++.
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~ 217 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL 217 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence 33444556666677889999999999999999999999999988665 567789999999999999999999988887
Q ss_pred HHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Q 004340 509 VLYHL----KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL--- 581 (760)
Q Consensus 509 ~l~~l----~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~--- 581 (760)
.+... ++..+|..++++++..+|..+.++..+|.+|...|++++|+..|+++++.+|++..++..+|.+|...
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~ 297 (472)
T 4g1t_A 218 KLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQ 297 (472)
T ss_dssp HHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 77655 45778999999999999999999999999999999999999999999999999999999999988653
Q ss_pred ----------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHH
Q 004340 582 ----------------EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV---IMSYL 642 (760)
Q Consensus 582 ----------------g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~---~~~~l 642 (760)
+.+++|+..|+++++.+|....++..+|.+|...|++++|+.+|++++++.+.+.. ++..+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~ 377 (472)
T 4g1t_A 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRY 377 (472)
T ss_dssp HHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999887654 35566
Q ss_pred HHH-HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH
Q 004340 643 GTA-MHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHE 721 (760)
Q Consensus 643 a~~-~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 721 (760)
|.+ +...|++++|+..|++++++.|....... ....+...+++++..+|+++.++..+|.+|...|+++
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~ 447 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQ 447 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 654 45789999999999999999998764332 2345667788999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHH
Q 004340 722 KAMLHFGLALDLKPSATDVATI 743 (760)
Q Consensus 722 ~A~~~~~~al~l~p~~~~a~~~ 743 (760)
+|+++|++|+++.|..+.+...
T Consensus 448 ~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 448 QADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999998876543
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=7e-26 Score=254.41 Aligned_cols=301 Identities=13% Similarity=0.084 Sum_probs=262.5
Q ss_pred HHHHHhcCChHHHHHHHhcccc---------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------CCCHH
Q 004340 439 GYRMSCMYRCKDALDVYLKLPH---------KHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRAS--------PYSLE 501 (760)
Q Consensus 439 a~~~~~~g~~~eAi~~l~~~~~---------~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~ 501 (760)
|+.+..+|++++|++.|+++++ .+|....++..+|.+|+.+|++++|+.+|++++++. +....
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 5556789999999999998754 367788899999999999999999999999999873 34567
Q ss_pred HHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 502 GMDIYSTVLYHLK--EDMKLSYLAQELITTDRLAPQSWCAMGNCYSL---QKDHETALKNFQRAVQLNPRFAYGHTLCGH 576 (760)
Q Consensus 502 ~~~~la~~l~~l~--~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~kal~~~p~~~~a~~~la~ 576 (760)
.+...+.++...+ ++++|..+++++++.+|++++++..+|.++.. .++.++|++.|+++++++|.+..++..+|.
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~ 217 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL 217 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence 7777887776654 58999999999999999999999999988654 577889999999999999999999999887
Q ss_pred HHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Q 004340 577 EYVA----LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL--- 649 (760)
Q Consensus 577 ~~~~----~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~--- 649 (760)
.+.. .+++++|+.+|++++..+|....++..+|.+|...|++++|+..|+++++.+|+++.++..+|.+|...
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~ 297 (472)
T 4g1t_A 218 KLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQ 297 (472)
T ss_dssp HHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 7665 467889999999999999999999999999999999999999999999999999999999999987643
Q ss_pred ----------------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHH
Q 004340 650 ----------------KRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES---GVYALM 710 (760)
Q Consensus 650 ----------------g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~---~~~~~l 710 (760)
+.+++|+..++++++.+|....++..+|.++...|++++|+.+|++++++.|++. .+++.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~ 377 (472)
T 4g1t_A 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRY 377 (472)
T ss_dssp HHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999988654 346667
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHhcCCChHH
Q 004340 711 GKI-YKRRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 711 a~~-~~~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
|.+ +...|++++|+.+|++++.+.|+...
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 755 45789999999999999988776544
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=1.3e-26 Score=251.34 Aligned_cols=264 Identities=13% Similarity=0.024 Sum_probs=242.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc
Q 004340 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (760)
Q Consensus 435 ~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~ 514 (760)
++..|..++..|++++|+..|++++...|.++.++..+|.+|...|++++|+.+|+++++.+|.+..++..++.++...|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 004340 515 EDMKLSYLAQELITTDRLAPQSWCAM----------GNCYSLQKDHETALKNFQRAVQLNPR--FAYGHTLCGHEYVALE 582 (760)
Q Consensus 515 ~~~~a~~~~~~~l~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~kal~~~p~--~~~a~~~la~~~~~~g 582 (760)
++++|...++++++.+|.+...+..+ |.++...|++++|+.+|++++..+|. ++.++..+|.+|...|
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 99999999999999999877666555 99999999999999999999999999 8999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004340 583 DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKA 662 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~a 662 (760)
++++|+.+|+++++..|.+..+|..+|.+|...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+++
T Consensus 228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 663 ILADKK------------NPLPMYQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 663 l~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
+++.|. ...+|..++.++..+|+.+.|.....+.+.
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 308 LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 999877 367899999999999999999887776443
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=1.4e-26 Score=245.62 Aligned_cols=267 Identities=12% Similarity=0.061 Sum_probs=251.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc
Q 004340 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (760)
Q Consensus 435 ~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~ 514 (760)
.+..|..++..|++++|+..|++++...|.+..++..+|.++...|++++|+.+|+++++.+|.+..++..++.++...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 515 EDMKLSYLAQELITTDRLAPQSWCAM--------------GN-CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYV 579 (760)
Q Consensus 515 ~~~~a~~~~~~~l~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~ 579 (760)
++.+|...+++++..+|.....+..+ +. ++...|++++|+.++++++...|.+..++..+|.++.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 99999999999999999998888777 66 6889999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004340 580 ALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMM 659 (760)
Q Consensus 580 ~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l 659 (760)
..|++++|+.+++++++.+|.+..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 004340 660 EKAILADKK------------NPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (760)
Q Consensus 660 ~~al~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 701 (760)
++++...|. +..++..+|.++...|++++|...++++++..|
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 999999999 789999999999999999999999998877544
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1e-26 Score=254.08 Aligned_cols=256 Identities=12% Similarity=0.057 Sum_probs=136.3
Q ss_pred ccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHH
Q 004340 458 LPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE-DMKLSYLAQELITTDRLAPQS 536 (760)
Q Consensus 458 ~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~-~~~a~~~~~~~l~~~p~~~~~ 536 (760)
++...|+...++..+|.++...|++++|+..|+++++++|.+..+|..++.++..+|+ +.+|+..+++++.++|.++.+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4566777888899999999999999999999999998888776655555555555443 444444444444444444444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-c
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR-Q 615 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~-~ 615 (760)
|+.+|.++...|++++|+.+|++++.++|++..+|..+|.++...|++++|+.+|+++++++|++..+|+.+|.++.. .
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 444444444444444444444444444444444444444444444444444444444444444444444444444444 2
Q ss_pred CCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC----
Q 004340 616 EKFEFS-----EHHFRMAFQISPHSSVIMSYLGTAMHALK--RSGEAIEMMEKAILADKKNPLPMYQKANILLSLE---- 684 (760)
Q Consensus 616 g~~~~A-----~~~l~~al~~~p~~~~~~~~la~~~~~~g--~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g---- 684 (760)
|.+++| +.+|++++.++|++..+|+.+|.++...| ++++|++.++++ +.+|+++.++..+|.+|..+|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc
Confidence 222333 24444444444444444444444444444 344444444443 444444444444444444432
Q ss_pred -----CHHHHHHHHHHH-HHHCCCCHHHHHHHHHHH
Q 004340 685 -----KFDEALEVLEEL-KEYAPRESGVYALMGKIY 714 (760)
Q Consensus 685 -----~~~eA~~~l~~a-l~~~p~~~~~~~~la~~~ 714 (760)
.+++|+++|+++ ++++|.....|..++..+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 124444444444 444444444444444433
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1.2e-26 Score=253.54 Aligned_cols=253 Identities=12% Similarity=0.046 Sum_probs=239.8
Q ss_pred HHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHH
Q 004340 492 ARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKD-HETALKNFQRAVQLNPRFAYG 570 (760)
Q Consensus 492 al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~kal~~~p~~~~a 570 (760)
++..+|.+..++..++.++...|++.+|+..+++++.++|.+..+|+.+|.++...|+ +++|+.+|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4566788889999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-c
Q 004340 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA-L 649 (760)
Q Consensus 571 ~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-~ 649 (760)
|..+|.++...|++++|+.+|+++++++|++..+|+.+|.++..+|++++|+.+|+++++++|++..+|+.+|.++.. .
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CChHHH-----HHHHHHHHHhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC----
Q 004340 650 KRSGEA-----IEMMEKAILADKKNPLPMYQKANILLSLE--KFDEALEVLEELKEYAPRESGVYALMGKIYKRRN---- 718 (760)
Q Consensus 650 g~~~eA-----l~~l~~al~~~p~~~~~~~~la~~~~~~g--~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g---- 718 (760)
|.+++| +.+|++++.++|++..+|+.++.++...| ++++|++.++++ +..|++..++..+|.+|..+|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc
Confidence 565888 59999999999999999999999999988 699999999998 889999999999999999985
Q ss_pred ----C-HHHHHHHHHHH-HhcCCChHHHHHHHH
Q 004340 719 ----M-HEKAMLHFGLA-LDLKPSATDVATIKA 745 (760)
Q Consensus 719 ----~-~~~A~~~~~~a-l~l~p~~~~a~~~l~ 745 (760)
+ +++|+++|+++ ++++|.....+..+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3 59999999999 999999998877655
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=4.5e-25 Score=222.04 Aligned_cols=200 Identities=18% Similarity=0.160 Sum_probs=176.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 531 RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (760)
Q Consensus 531 p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~ 610 (760)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 004340 611 VYLRQ-----------EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI 679 (760)
Q Consensus 611 ~~~~~-----------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~ 679 (760)
++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ +++.+++.+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 680 LLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLAL 731 (760)
Q Consensus 680 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 731 (760)
|...|++++|+..|++++++.|+++.++..+|.++...|++++|+..|+++-
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998764
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-24 Score=220.65 Aligned_cols=237 Identities=15% Similarity=0.121 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCY 544 (760)
Q Consensus 465 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~ 544 (760)
.+.++..+|.+++..|++++|+.+|+++++.+ .+ +.+|+.+|.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~----------------------------------~~~~~~~~~~~ 48 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD----------------------------------ITYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC----------------------------------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc----------------------------------HHHHHHHHHHH
Confidence 34667778888888888888888888877766 44 34555566666
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004340 545 SLQKDHETALKNFQRAVQLNPRF-------AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK 617 (760)
Q Consensus 545 ~~~g~~~~A~~~~~kal~~~p~~-------~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 617 (760)
...|++++|+.++++++.++|.. ..++..+|.++...|++++|+.+|++++++.|. +.++...|+
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~ 120 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRN 120 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhH
Confidence 66666666666666666665544 456666666666666666666666666666655 344555666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELK 697 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 697 (760)
+++|+..+++++..+|.+..++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 67777777777777776677777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CChHHHHHHH
Q 004340 698 EYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLK------PSATDVATIK 744 (760)
Q Consensus 698 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~------p~~~~a~~~l 744 (760)
+..|+++.++..+|.++...|++++|+.+|+++++++ |++..+...+
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 7777777777777777777777777777777777777 6666544433
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=3.1e-24 Score=226.21 Aligned_cols=260 Identities=10% Similarity=0.039 Sum_probs=154.4
Q ss_pred HHHHHHhcCChHHHHHHHhcccccCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Q 004340 438 EGYRMSCMYRCKDALDVYLKLPHKHYNT-GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~~~~p~~-~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~ 516 (760)
....++..|+|.+|+..++++....|.+ ..+...++++|..+|++++|+..++.. +|....++..++..+...++.
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcH
Confidence 3455678899999999999988888776 457788899999999999999877652 444444555555555555555
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 517 MKLSYLAQELITT--DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (760)
Q Consensus 517 ~~a~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~a 594 (760)
++++..+++++.. +|+++.+++.+|.++...|++++|++.|++ |.+..++..+|.++...|++++|+..|+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555555543 355555555555555555555555555554 455555555555555555555555555555
Q ss_pred HHhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Q 004340 595 LRVDARHYNSWYGLG--MVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLP 672 (760)
Q Consensus 595 l~~~p~~~~a~~~la--~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~ 672 (760)
++.+|++.......+ .++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+
T Consensus 157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 555555433322222 222233555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHHHCCCCHH
Q 004340 673 MYQKANILLSLEKFDE-ALEVLEELKEYAPRESG 705 (760)
Q Consensus 673 ~~~la~~~~~~g~~~e-A~~~l~~al~~~p~~~~ 705 (760)
+.++|.++...|++++ +.++++++++++|+++.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 5555555555555543 34455555555555554
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=4.2e-25 Score=228.51 Aligned_cols=247 Identities=15% Similarity=0.097 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (760)
Q Consensus 466 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~ 545 (760)
+.+++.+|.+++..|++++|+..|+++++.+|.+ +.+|+.+|.++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----------------------------------~~~~~~l~~~~~ 48 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS----------------------------------PYIYNRRAVCYY 48 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC----------------------------------STTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----------------------------------HHHHHHHHHHHH
Confidence 3456677777777777777777777777666654 455666666667
Q ss_pred hcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004340 546 LQKDHETALKNFQRAVQLNPRF----AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS 621 (760)
Q Consensus 546 ~~g~~~~A~~~~~kal~~~p~~----~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 621 (760)
..|++++|+.+|++++. .|.+ ..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.+|...|++++|
T Consensus 49 ~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 49 ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHH
Confidence 77777777777777766 2222 344677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Q 004340 622 EHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK---FDEALEVLEELKE 698 (760)
Q Consensus 622 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~---~~eA~~~l~~al~ 698 (760)
+.+|+++++.+|.++.++..+|...+..+++++|+..|+++++..|.+..+++.+|.++...|+ +++|+..|+++++
T Consensus 128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 7777777777777777777777444445577777777777777777777777777777777777 7777777777777
Q ss_pred HC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004340 699 YA---PR-----ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAI 747 (760)
Q Consensus 699 ~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l 747 (760)
.. |+ ...++..+|.+|...|++++|+.+|+++++++|++..++..+..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 64 33 125677788888888888888888888888888877776665544
No 29
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=6.9e-25 Score=226.92 Aligned_cols=254 Identities=14% Similarity=0.134 Sum_probs=220.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 513 (760)
..+..|..++..|++++|+..|+++++.+|.++.++..+|.+|+..|++++|+.+|+++++ .|.+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------------ 71 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK------------ 71 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh------------
Confidence 3567888899999999999999999999999999999999999999999999999999998 443321
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 514 KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQS 593 (760)
Q Consensus 514 ~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~ 593 (760)
..+.+|..+|.++...|++++|+.+|+++++.+|.+..++..+|.+|...|++++|+.+|++
T Consensus 72 ------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 72 ------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp ------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred ------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 13567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhC---C
Q 004340 594 ALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR---SGEAIEMMEKAILAD---K 667 (760)
Q Consensus 594 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~---~~eAl~~l~~al~~~---p 667 (760)
+++.+|.+..+++.+|......+++++|+.+|+++++.+|++..++..+|.++...|+ +++|+..|+++++.. |
T Consensus 134 al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 213 (272)
T 3u4t_A 134 QIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG 213 (272)
T ss_dssp GCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG
T ss_pred HhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc
Confidence 9999999999999999444455699999999999999999999999999999999998 888999999999886 4
Q ss_pred CC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Q 004340 668 KN-----PLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN 718 (760)
Q Consensus 668 ~~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 718 (760)
+. ..++..+|.+|...|++++|+.+|+++++++|+++.++..++.+....+
T Consensus 214 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 214 AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 32 2578889999999999999999999999999999999888887765443
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.4e-24 Score=217.44 Aligned_cols=217 Identities=12% Similarity=0.142 Sum_probs=203.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-------YNSW 605 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~-------~~a~ 605 (760)
.++.|..+|.++...|++++|+.+|+++++.+ .+..++..+|.++...|++++|+.+++++++..|.. ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 35789999999999999999999999999999 899999999999999999999999999999998876 7899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 004340 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK 685 (760)
Q Consensus 606 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~ 685 (760)
..+|.++...|++++|+.+|++++.+.|. +.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999987 5677888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHHhcCCCCcccc
Q 004340 686 FDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA-AIEKLHVPDEIED 758 (760)
Q Consensus 686 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~~l~~~deaee 758 (760)
+++|+..|+++++..|.++.++..+|.++...|++++|+.+|+++++++|++..++..++ .+..+++.++|.+
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998877666 5678887776643
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=1.1e-23 Score=222.00 Aligned_cols=265 Identities=8% Similarity=0.037 Sum_probs=236.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 004340 473 GKAYFEVVDYLEAERAFTLARRASPYS-LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHE 551 (760)
Q Consensus 473 a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 551 (760)
.+..+..|+|.+|+..++++....|.+ .+....++.++..+|+++++...++. .+|....++..++..+...++++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 456788999999999999887777766 46778889999999999999986654 25556678889999999999999
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 552 TALKNFQRAVQL--NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAF 629 (760)
Q Consensus 552 ~A~~~~~kal~~--~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al 629 (760)
+|++.+++++.. +|+++.+++.+|.++...|++++|+..|++ |.+..++..+|.++..+|++++|+..|++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999876 699999999999999999999999999998 8899999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHH--HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 004340 630 QISPHSSVIMSYLG--TAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVY 707 (760)
Q Consensus 630 ~~~p~~~~~~~~la--~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 707 (760)
+.+|++.......+ .++...|++++|+..|+++++..|.++.+++.+|.++..+|++++|+..|+++++.+|+++.++
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999875544433 3344558999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHhcCCChHHHHHHHH
Q 004340 708 ALMGKIYKRRNMHEK-AMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 708 ~~la~~~~~~g~~~~-A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
..+|.++...|+.++ +..+++++++++|+++.+..+..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~ 276 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA 276 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999999976 57899999999999997655443
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=5.4e-24 Score=214.11 Aligned_cols=199 Identities=22% Similarity=0.194 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 463 YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGN 542 (760)
Q Consensus 463 p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~ 542 (760)
|.++.+++.+|.+++..|++++|+..|+++++.+|.+ +.+|+.+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------------------~~a~~~lg~ 47 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD----------------------------------PEALYWLAR 47 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC----------------------------------HHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHH
Confidence 4555677777777777777777777777777666655 455555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004340 543 CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL-----------EDFENGIRSYQSALRVDARHYNSWYGLGMV 611 (760)
Q Consensus 543 ~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~-----------g~~e~A~~~~~~al~~~p~~~~a~~~la~~ 611 (760)
++...|++++|+..|+++++++|++..++..+|.++... |++++|+..|+++++++|++..++..+|.+
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV 127 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 666666666666666666666666666666666666666 677777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004340 612 YLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALE 691 (760)
Q Consensus 612 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 691 (760)
+...|++++|+..|+++++++ +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred HHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 777777777777777777776 6666777777777777777777777777777777777777777777777777777776
Q ss_pred HHHHH
Q 004340 692 VLEEL 696 (760)
Q Consensus 692 ~l~~a 696 (760)
.|+++
T Consensus 207 ~~~~~ 211 (217)
T 2pl2_A 207 AAALE 211 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 66654
No 33
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=3.5e-24 Score=234.35 Aligned_cols=267 Identities=17% Similarity=0.157 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHH
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL----EGMDIYSTVLYHLKEDMKLSYLAQELITT------DRLAPQS 536 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~l~~l~~~~~a~~~~~~~l~~------~p~~~~~ 536 (760)
.++..+|.+++..|++++|+.+|+++++..|.+. .++..++.++...|++.+|..++++++.. .+..+.+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344444444444444444444444444444432 23334444444444444444444444333 1222344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALED--------------------FENGIRS 590 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~------~~a~~~la~~~~~~g~--------------------~e~A~~~ 590 (760)
+..+|.++...|++++|+.++++++.+.+.. ..++..+|.+|...|+ +++|+.+
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 5555555555555555555555555443321 2344555555555555 5555555
Q ss_pred HHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHH
Q 004340 591 YQSALRV------DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS------VIMSYLGTAMHALKRSGEAIEM 658 (760)
Q Consensus 591 ~~~al~~------~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~------~~~~~la~~~~~~g~~~eAl~~ 658 (760)
|.+++.+ .+....++..+|.++...|++++|+.++++++++.+... .++..+|.++...|++++|+.+
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 5555543 112233455555555555555555555555554433221 1445555555555555555555
Q ss_pred HHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 004340 659 MEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEELKEYAPRE------SGVYALMGKIYKRRNMHEKAMLH 726 (760)
Q Consensus 659 l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 726 (760)
+++++.+.+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.+|...|++++|+.+
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555544332 3444555555555555555555555555443221 34455555555555555555555
Q ss_pred HHHHHhc
Q 004340 727 FGLALDL 733 (760)
Q Consensus 727 ~~~al~l 733 (760)
|++++++
T Consensus 330 ~~~al~~ 336 (406)
T 3sf4_A 330 AEKHLEI 336 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 34
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=1.1e-21 Score=222.10 Aligned_cols=280 Identities=15% Similarity=0.093 Sum_probs=234.1
Q ss_pred cCChHHHHHHHhcccccCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----ccCH
Q 004340 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFE----VVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH----LKED 516 (760)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~----l~~~ 516 (760)
.+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..++.++.. .++.
T Consensus 164 ~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 56778888888887765 468899999999998 89999999999999875 467888889998887 7889
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHH
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSL----QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL-----EDFENG 587 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~-----g~~e~A 587 (760)
.+|..+++++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.+|... +++++|
T Consensus 240 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 240 TQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 9999999998875 568889999999988 89999999999998765 5688899999999887 899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 004340 588 IRSYQSALRVDARHYNSWYGLGMVYLRQE---KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA----LKRSGEAIEMME 660 (760)
Q Consensus 588 ~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eAl~~l~ 660 (760)
+.+|+++++. .+..+++.+|.+|...| ++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+
T Consensus 316 ~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 316 ISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999999886 45788999999998866 789999999999886 678899999999998 889999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 661 KAILADKKNPLPMYQKANILLS----LEKFDEALEVLEELKEYAPR---ESGVYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 661 ~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
++++.. ++.+++.+|.+|.. .+++++|+.+|+++++..|+ ++.+...+|.++.. +.+.|.+...+.++.
T Consensus 392 ~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 392 KAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHH
T ss_pred HHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHH
Confidence 998864 68899999999998 89999999999999998844 78888888887764 345555556666665
Q ss_pred CCChHHH
Q 004340 734 KPSATDV 740 (760)
Q Consensus 734 ~p~~~~a 740 (760)
.|+...+
T Consensus 468 ~~~~~~~ 474 (490)
T 2xm6_A 468 YAPEAWA 474 (490)
T ss_dssp HCHHHHH
T ss_pred HHHHHHH
Confidence 5655543
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=237.30 Aligned_cols=291 Identities=15% Similarity=0.178 Sum_probs=255.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCCHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT----GWVLSQVGKAYFEVVDYLEAERAFTLARRA------SPYSLE 501 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~----~~~l~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 501 (760)
...++..|..++..|++++|+..|++++...|.+ ..++..+|.+++..|++++|+.+|++++.. .|....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3455677888899999999999999999988887 468999999999999999999999999887 344567
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 004340 502 GMDIYSTVLYHLKEDMKLSYLAQELITTDRLA------PQSWCAMGNCYSLQKD--------------------HETALK 555 (760)
Q Consensus 502 ~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~ 555 (760)
++..++.++...|++++|..+++++++..+.. +.++..+|.+|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 88999999999999999999999999876543 4589999999999999 999999
Q ss_pred HHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 004340 556 NFQRAVQL------NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYGLGMVYLRQEKFEFSEH 623 (760)
Q Consensus 556 ~~~kal~~------~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~ 623 (760)
++++++.+ .+....++..+|.+|...|++++|+.++++++++.+.. ..++..+|.+|...|++++|+.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99999886 33345688999999999999999999999999886543 3389999999999999999999
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHH
Q 004340 624 HFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALE 691 (760)
Q Consensus 624 ~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 691 (760)
++++++.+.+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.+|...|++++|+.
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999887655 6788999999999999999999999999886543 5688899999999999999999
Q ss_pred HHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHH
Q 004340 692 VLEELKEYAP------RESGVYALMGKIYKRRNMHEK 722 (760)
Q Consensus 692 ~l~~al~~~p------~~~~~~~~la~~~~~~g~~~~ 722 (760)
++++++++.+ ....++..+|.++...|+...
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9999998743 236789999999999998744
No 36
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=8.7e-24 Score=232.67 Aligned_cols=281 Identities=19% Similarity=0.175 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTG----WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYS 507 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~----~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 507 (760)
....+..|..++..|++++|+..|++++...|.++ .++..+|.+|+..|++++|+.+|+++++.....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------- 119 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-------- 119 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--------
Confidence 44455667777788888888888888877777765 467788888888888888888888777642100
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHc
Q 004340 508 TVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL------NPRFAYGHTLCGHEYVAL 581 (760)
Q Consensus 508 ~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~------~p~~~~a~~~la~~~~~~ 581 (760)
...+....++..+|.+|...|++++|+.+|++++.+ .+....++..+|.+|...
T Consensus 120 --------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 120 --------------------NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp --------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 001233567888999999999999999999999887 455667889999999999
Q ss_pred CC-----------------HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 004340 582 ED-----------------FENGIRSYQSALRVD------ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS-- 636 (760)
Q Consensus 582 g~-----------------~e~A~~~~~~al~~~------p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-- 636 (760)
|+ +++|+.+|++++++. +....++..+|.+|...|++++|+.++++++++.+...
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 99 999999999988763 23356889999999999999999999999998866432
Q ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----
Q 004340 637 ----VIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEELKEYAPR---- 702 (760)
Q Consensus 637 ----~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---- 702 (760)
.++..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++.+.+.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 378899999999999999999999999887644 577889999999999999999999999987543
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004340 703 --ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDV 740 (760)
Q Consensus 703 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 740 (760)
...++..+|.+|...|++++|+.+|++++++.+...+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 379 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXX 379 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 25689999999999999999999999999998876653
No 37
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.91 E-value=1.3e-23 Score=222.55 Aligned_cols=277 Identities=18% Similarity=0.204 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcccccCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004340 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT----GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYST 508 (760)
Q Consensus 433 l~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 508 (760)
..++..|..++..|++++|+..|++++...|.+ ..++..+|.+++..|++++|+.+|+++++..+.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------- 75 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART---------- 75 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc----------
Confidence 344445555666666666666666665555554 345556666666666666666666665543110
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC
Q 004340 509 VLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALE 582 (760)
Q Consensus 509 ~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~------~~a~~~la~~~~~~g 582 (760)
....+..+.++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++...|
T Consensus 76 ------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 76 ------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp ------------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 00022335678889999999999999999999999875433 347889999999999
Q ss_pred C--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 004340 583 D--------------------FENGIRSYQSALRV------DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS- 635 (760)
Q Consensus 583 ~--------------------~e~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~- 635 (760)
+ +++|+.++++++.+ .+....++..+|.++...|++++|+.+++++++..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 9 99999999998876 23335688999999999999999999999999875432
Q ss_pred -----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-
Q 004340 636 -----SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEELKEYAPRE- 703 (760)
Q Consensus 636 -----~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~- 703 (760)
..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 3378999999999999999999999999886654 5778899999999999999999999999875432
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 704 -----SGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 704 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
..++..+|.+|...|++++|..+|++++++.+..
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 5688999999999999999999999999988764
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=4.4e-23 Score=209.11 Aligned_cols=216 Identities=21% Similarity=0.278 Sum_probs=184.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~ 612 (760)
.+..|+.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004340 613 LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEV 692 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 692 (760)
...|++++|+.+++++++..|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+..
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004340 693 LEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIE 748 (760)
Q Consensus 693 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~ 748 (760)
++++++..|+++.++..+|.+|...|++++|+.+|+++++++|++..++..+..+.
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777666544
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=7.4e-22 Score=197.07 Aligned_cols=216 Identities=13% Similarity=0.081 Sum_probs=203.3
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGL 608 (760)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~l 608 (760)
..|.++.+|+.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+.+|+++++.+|.+..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 004340 609 GMVYLRQ-EKFEFSEHHFRMAFQ--ISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK 685 (760)
Q Consensus 609 a~~~~~~-g~~~~A~~~l~~al~--~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~ 685 (760)
|.++... |++++|+.+++++++ ..|....++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 9999999 999999999999999 6677789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 004340 686 FDEALEVLEELKEYAP-RESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIK 744 (760)
Q Consensus 686 ~~eA~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l 744 (760)
+++|+..++++++..| .+..++..++.++...|++++|..+++.+...+|++..+...+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999999999999 9999999999999999999999999999999999998876544
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=2.5e-22 Score=205.31 Aligned_cols=215 Identities=17% Similarity=0.199 Sum_probs=204.3
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 530 DRLA-PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGL 608 (760)
Q Consensus 530 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~l 608 (760)
+|.. +.+|+.+|.++...|++++|+.+|++++..+|....++..+|.++...|++++|+.+|+++++.+|.+..++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 4444 688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 004340 609 GMVYLRQEKFEFSEHHFRMAFQ--ISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKF 686 (760)
Q Consensus 609 a~~~~~~g~~~~A~~~l~~al~--~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 686 (760)
|.++...|++++|+.++++++. ..|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999 88888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 004340 687 DEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIK 744 (760)
Q Consensus 687 ~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l 744 (760)
++|+.+++++++..|.+..++..++.++...|++++|..++++++++.|++..+..++
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998765543
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.90 E-value=4.9e-23 Score=226.60 Aligned_cols=240 Identities=15% Similarity=0.131 Sum_probs=195.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccccc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004340 435 ILGEGYRMSCMYRCKDALDVYLKLPHK------HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYST 508 (760)
Q Consensus 435 ~l~~a~~~~~~g~~~eAi~~l~~~~~~------~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 508 (760)
++..|..+...|++++|+..|++++.. .+....++..+|.+|...|++++|+.+|+++++..+..
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 159 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--------- 159 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh---------
Confidence 445666778899999999999998765 56678899999999999999999999999998763210
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHhC------C
Q 004340 509 VLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKD-----------------HETALKNFQRAVQLN------P 565 (760)
Q Consensus 509 ~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~kal~~~------p 565 (760)
...+....++..+|.+|...|+ +++|+.++++++.+. +
T Consensus 160 -------------------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~ 220 (411)
T 4a1s_A 160 -------------------GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG 220 (411)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -------------------hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 0011224567778888888888 888888888887753 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 004340 566 RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS---- 635 (760)
Q Consensus 566 ~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---- 635 (760)
....++..+|.+|...|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++...+..
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 300 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 334578889999999999999999999998876543 2378899999999999999999999999887644
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 636 --SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 636 --~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.+|...|++++|+.+|++++++.+.
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6678899999999999999999999999875432 457888999999999999999999999998764
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=2.5e-22 Score=203.43 Aligned_cols=215 Identities=19% Similarity=0.189 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSL 546 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~ 546 (760)
..++.+|.+++..|++++|+.+|+++++.+|.+. .+++.+|.++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~----------------------------------~~~~~la~~~~~ 69 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA----------------------------------IPYINFANLLSS 69 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCH----------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH----------------------------------HHHHHHHHHHHH
Confidence 4455566666666666666666666665555443 333444444444
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 547 QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFR 626 (760)
Q Consensus 547 ~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 626 (760)
.|++++|+.+|++++..+|....++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+++
T Consensus 70 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 70 VNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 44444444444444444444444444444444444455555555555444444444455555555555555555555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Q 004340 627 MAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGV 706 (760)
Q Consensus 627 ~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 706 (760)
++++..|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+.++++++++.|++..+
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 229 (243)
T 2q7f_A 150 RAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 004340 707 YALMGKIYK 715 (760)
Q Consensus 707 ~~~la~~~~ 715 (760)
+..++.+..
T Consensus 230 ~~~~~~l~~ 238 (243)
T 2q7f_A 230 LHAKKLLGH 238 (243)
T ss_dssp HHHHTC---
T ss_pred HHHHHHHHh
Confidence 554444433
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=8e-22 Score=191.81 Aligned_cols=173 Identities=19% Similarity=0.263 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004340 566 RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA 645 (760)
Q Consensus 566 ~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 645 (760)
+.+.+|+.+|.+|...|++++|+..|+++++++|++..++..+|.+|...|++++|+..+++++...|.+..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004340 646 MHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAML 725 (760)
Q Consensus 646 ~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 725 (760)
+...++++.|+..+.+++...|.+..++..+|.++..+|++++|++.|+++++++|.++.+++.+|.+|..+|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCChH
Q 004340 726 HFGLALDLKPSAT 738 (760)
Q Consensus 726 ~~~~al~l~p~~~ 738 (760)
+|+++++++|++.
T Consensus 163 ~~~~al~~~p~~a 175 (184)
T 3vtx_A 163 YFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHTTHHHH
T ss_pred HHHHHHhCCccCH
Confidence 7777777777654
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=8e-23 Score=216.38 Aligned_cols=240 Identities=14% Similarity=0.138 Sum_probs=191.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccccc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004340 435 ILGEGYRMSCMYRCKDALDVYLKLPHK------HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYST 508 (760)
Q Consensus 435 ~l~~a~~~~~~g~~~eAi~~l~~~~~~------~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 508 (760)
....|..+...|++++|+..+++++.. .+....++..+|.++...|++++|+.+|+++++..+.....
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------ 119 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK------ 119 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc------
Confidence 345566678899999999999997654 44567889999999999999999999999998865432110
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHh-----
Q 004340 509 VLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKD--------------------HETALKNFQRAVQL----- 563 (760)
Q Consensus 509 ~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~kal~~----- 563 (760)
+....++..+|.++...|+ +++|+.++++++.+
T Consensus 120 ----------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~ 177 (338)
T 3ro2_A 120 ----------------------VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177 (338)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0013466778888888888 88888888888765
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 004340 564 -NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS- 635 (760)
Q Consensus 564 -~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~- 635 (760)
.+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 22335678889999999999999999999998875432 3378899999999999999999999998876654
Q ss_pred -----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 636 -----SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 636 -----~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
..++..+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.++++++++.+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6678889999999999999999999998875432 457888999999999999999999999987664
No 45
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=3.9e-20 Score=209.48 Aligned_cols=283 Identities=14% Similarity=0.116 Sum_probs=257.3
Q ss_pred cCChHHHHHHHhcccccCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----ccCH
Q 004340 445 MYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFE----VVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH----LKED 516 (760)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~----l~~~ 516 (760)
.+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .+..++..++.++.. .++.
T Consensus 128 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCH
Confidence 78999999999998765 578999999999998 89999999999999886 578999999999998 8999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSL----QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA----LEDFENGI 588 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~----~g~~e~A~ 588 (760)
.+|..++.++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 204 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 204 AISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 9999999999876 468999999999997 89999999999999875 568899999999999 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHH
Q 004340 589 RSYQSALRVDARHYNSWYGLGMVYLRQ-----EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK---RSGEAIEMME 660 (760)
Q Consensus 589 ~~~~~al~~~p~~~~a~~~la~~~~~~-----g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~eAl~~l~ 660 (760)
.+|+++++. .+..+++.+|.+|... +++++|+.+|+++++. .++.+++.+|.++...| ++++|+.+|+
T Consensus 280 ~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 280 EWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp HHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 999999865 5788999999999998 9999999999999886 56789999999999877 8999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 004340 661 KAILADKKNPLPMYQKANILLS----LEKFDEALEVLEELKEYAPRESGVYALMGKIYKR----RNMHEKAMLHFGLALD 732 (760)
Q Consensus 661 ~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 732 (760)
++++. .++.+++.+|.+|.. .+++++|+.+|+++++.. ++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 356 ~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 356 KAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 99987 579999999999999 899999999999999864 68999999999999 8999999999999999
Q ss_pred cCCC---hHHHHHH
Q 004340 733 LKPS---ATDVATI 743 (760)
Q Consensus 733 l~p~---~~~a~~~ 743 (760)
.+|+ +..+...
T Consensus 432 ~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 432 NDMNLFGTENRNIT 445 (490)
T ss_dssp HHCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHH
Confidence 9965 5554443
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=9.4e-21 Score=196.72 Aligned_cols=232 Identities=19% Similarity=0.234 Sum_probs=189.7
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 462 HYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMG 541 (760)
Q Consensus 462 ~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la 541 (760)
.|.++.+++.+|.+++..|++++|+.+|+++++ |. ++.+++.+|
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~----------------------------------~~~a~~~lg 45 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK----------------------------------ENSGCFNLG 45 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT----------------------------------CHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC----------------------------------CHHHHHHHH
Confidence 356777888888888888888888888888776 33 356677778
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 542 NCYSL----QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA----LEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (760)
Q Consensus 542 ~~~~~----~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~----~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~ 613 (760)
.+|.. .+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.+ +..+++.+|.+|.
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYH 121 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHH
Confidence 88888 888888888888888775 67888888888888 888888888888888773 6788888888888
Q ss_pred H----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---
Q 004340 614 R----QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA----LKRSGEAIEMMEKAILADKKNPLPMYQKANILLS--- 682 (760)
Q Consensus 614 ~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~--- 682 (760)
. .+++++|+.+|+++++.. +..++..+|.++.. .+++++|+.+|+++++.. ++.+++.+|.+|..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCS
T ss_pred cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCC
Confidence 8 888888888888888865 67788888888888 888888888888888773 57888888999988
Q ss_pred -cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHH
Q 004340 683 -LEKFDEALEVLEELKEYAPRESGVYALMGKIYKR----RNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 683 -~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
.+++++|+.+|+++++..+ +.+++.+|.+|.. .+++++|+.+|++++++.|++..
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999888765 7888889999988 88999999999999998887654
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=9.7e-21 Score=196.60 Aligned_cols=217 Identities=15% Similarity=0.143 Sum_probs=195.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 004340 530 DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA----LEDFENGIRSYQSALRVDARHYNSW 605 (760)
Q Consensus 530 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~----~g~~e~A~~~~~~al~~~p~~~~a~ 605 (760)
+|.++.+++.+|.++...|++++|+.+|+++++ +.+..++..+|.+|.. .+++++|+.+|+++++.+ +..++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 467889999999999999999999999999998 7888999999999999 999999999999999985 79999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 004340 606 YGLGMVYLR----QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA----LKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (760)
Q Consensus 606 ~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eAl~~l~~al~~~p~~~~~~~~la 677 (760)
+.+|.+|.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++.. ++.+++.+|
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 999999999 99999999999999987 489999999999999 999999999999999976 688999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHH-HHH
Q 004340 678 NILLS----LEKFDEALEVLEELKEYAPRESGVYALMGKIYKR----RNMHEKAMLHFGLALDLKPSATDVATIKA-AIE 748 (760)
Q Consensus 678 ~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~~~~a~~~l~-~l~ 748 (760)
.+|.. .+++++|+.+|+++++.. ++.+++.+|.+|.. .+++++|+.+|+++++..| ..+...+. .+.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 99999 999999999999999874 68999999999999 9999999999999999977 44555555 455
Q ss_pred h----cCCCCcccc
Q 004340 749 K----LHVPDEIED 758 (760)
Q Consensus 749 ~----l~~~deaee 758 (760)
. .++.++|.+
T Consensus 230 ~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 230 NGEGVTRNEKQAIE 243 (273)
T ss_dssp TTSSSSCCSTTHHH
T ss_pred cCCCcccCHHHHHH
Confidence 5 667776643
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=3.1e-22 Score=206.87 Aligned_cols=244 Identities=11% Similarity=0.023 Sum_probs=141.7
Q ss_pred cCChHHHHHHHhcccccC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Q 004340 445 MYRCKDALDVYLKLPHKH----YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLS 520 (760)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~----p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~ 520 (760)
.|++++|+..|++++... |..+.+++.+|.++...|++++|+.+|+++++.+|.+..++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------------- 80 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF----------------- 80 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH-----------------
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHH-----------------
Confidence 456788888888777652 45677888888888888888888888888887777665544
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 521 YLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600 (760)
Q Consensus 521 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~ 600 (760)
..+|.++...|++++|+.+|++++..+|.+..++..+|.+|...|++++|+.+|+++++.+|.
T Consensus 81 -----------------~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (275)
T 1xnf_A 81 -----------------NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143 (275)
T ss_dssp -----------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----------------HHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 445555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----ChHHHHHH
Q 004340 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK----NPLPMYQK 676 (760)
Q Consensus 601 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~----~~~~~~~l 676 (760)
+......++.+ ...|++++|+..+++++...|.+...+. ++.++...++.++|+..+++++...|. ++.+++.+
T Consensus 144 ~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 221 (275)
T 1xnf_A 144 DPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL 221 (275)
T ss_dssp CHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHH
Confidence 54443333322 3345555555555555555555444332 444445555555555555555544432 24555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 677 ANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHF 727 (760)
Q Consensus 677 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 727 (760)
|.++...|++++|+.+|++++...|++... .+.++..+|++++|++.|
T Consensus 222 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 222 GKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 666666666666666666666666544322 255555666666666555
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=2.7e-22 Score=207.32 Aligned_cols=248 Identities=13% Similarity=0.087 Sum_probs=211.5
Q ss_pred HHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004340 476 YFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALK 555 (760)
Q Consensus 476 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 555 (760)
+...|++++|+..|+++++..+... |.++.+|+.+|.++...|++++|+.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~ 64 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTD------------------------------DERAQLLYERGVLYDSLGLRALARN 64 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCH------------------------------HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccC------------------------------chhHHHHHHHHHHHHHcccHHHHHH
Confidence 3445778888888888877644321 2346788999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004340 556 NFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS 635 (760)
Q Consensus 556 ~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 635 (760)
+|++++..+|.+..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.+|...|++++|+.+|+++++..|.+
T Consensus 65 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 65 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHH
Q 004340 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR----ESGVYALMG 711 (760)
Q Consensus 636 ~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~----~~~~~~~la 711 (760)
......++.+ ...|++++|+..+++++...|.+...+. ++.++...+++++|+..+++++...|. +..++..+|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 222 (275)
T 1xnf_A 145 PFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLG 222 (275)
T ss_dssp HHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHH
Confidence 8776666544 6679999999999999999998876654 788888899999999999999876653 368999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCccc
Q 004340 712 KIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEKLHVPDEIE 757 (760)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l~~~deae 757 (760)
.+|...|++++|+.+|++++.++|++.... ...+..+++.++|.
T Consensus 223 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 223 KYYLSLGDLDSATALFKLAVANNVHNFVEH--RYALLELSLLGQDQ 266 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCTTCHHH--HHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCchhHHHH--HHHHHHHHHHHhhH
Confidence 999999999999999999999999876533 22344444444443
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=1.7e-21 Score=189.41 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=166.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004340 532 LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMV 611 (760)
Q Consensus 532 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~ 611 (760)
+++.+|+.+|.+|...|++++|+.+|+++++++|+++.++..+|.+|...|++++|+..+.+++...|....++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004340 612 YLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALE 691 (760)
Q Consensus 612 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 691 (760)
+...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++++|.++.+++.+|.+|..+|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCH
Q 004340 692 VLEELKEYAPRES 704 (760)
Q Consensus 692 ~l~~al~~~p~~~ 704 (760)
.|+++++++|+++
T Consensus 163 ~~~~al~~~p~~a 175 (184)
T 3vtx_A 163 YFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHTTHHHH
T ss_pred HHHHHHhCCccCH
Confidence 9999999998654
No 51
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=6.4e-20 Score=209.84 Aligned_cols=293 Identities=11% Similarity=0.028 Sum_probs=238.6
Q ss_pred cCChHHHHHHHhcccccCCCCH--HHHHHHHHHH-------------HHccCHHHHHHHHHH------HHHH-----CCC
Q 004340 445 MYRCKDALDVYLKLPHKHYNTG--WVLSQVGKAY-------------FEVVDYLEAERAFTL------ARRA-----SPY 498 (760)
Q Consensus 445 ~g~~~eAi~~l~~~~~~~p~~~--~~l~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~p~ 498 (760)
.|++++|+.+|++++. .|... .+|...+... ...++|.+|...|.. +++. .|.
T Consensus 143 ~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 143 NQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 4678899999999887 45432 2332222211 135678888877776 3322 222
Q ss_pred C-------HHHHHHHHHHHHHc----cC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cCCHH-----
Q 004340 499 S-------LEGMDIYSTVLYHL----KE----DMKLSYLAQELITTDRLAPQSWCAMGNCYSL-------QKDHE----- 551 (760)
Q Consensus 499 ~-------~~~~~~la~~l~~l----~~----~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~~----- 551 (760)
. ...|..+....... ++ ..++...+++++...|.++.+|+.+|.++.. .|+++
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 1 23343333222111 12 2467889999999999999999999999986 79987
Q ss_pred --HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 552 --TALKNFQRAVQ-LNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY-NSWYGLGMVYLRQEKFEFSEHHFRM 627 (760)
Q Consensus 552 --~A~~~~~kal~-~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A~~~l~~ 627 (760)
+|+..|+++++ ..|++..+|..+|.++...|++++|...|+++++..|.+. .+|..+|.++...|++++|+..|++
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999997 8999999999999999999999999999999999999885 6999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH--
Q 004340 628 AFQISPHSSVIMSYLGTA-MHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES-- 704 (760)
Q Consensus 628 al~~~p~~~~~~~~la~~-~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~-- 704 (760)
+++..|.....+...+.+ +...|++++|..+|+++++..|+++.+|..++.++...|++++|..+|++++...|.++
T Consensus 382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 999998887777766665 34689999999999999999999999999999999999999999999999999876554
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004340 705 --GVYALMGKIYKRRNMHEKAMLHFGLALDLKPSAT 738 (760)
Q Consensus 705 --~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 738 (760)
.+|...+......|+.+.+..++.++++..|++.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 4888888889999999999999999999999644
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=5.5e-22 Score=223.76 Aligned_cols=213 Identities=19% Similarity=0.165 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDH-ETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al 595 (760)
+++...+.+.....|..+.+|+.+|.++...|++ ++|+.+|+++++++|.+..+|..+|.+|...|++++|+.+|++++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455566667788889999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CChHHHHHH
Q 004340 596 RVDARHYNSWYGLGMVYLRQ---------EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL--------KRSGEAIEM 658 (760)
Q Consensus 596 ~~~p~~~~a~~~la~~~~~~---------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~--------g~~~eAl~~ 658 (760)
+++|+ ..++..+|.++... |++++|+.+|+++++++|+++.+|..+|.++... |++++|+..
T Consensus 165 ~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 165 THCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp TTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 99998 79999999999999 9999999999999999999999999999999999 999999999
Q ss_pred HHHHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 659 MEKAILADK---KNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLA 730 (760)
Q Consensus 659 l~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 730 (760)
|+++++++| .++.+++.+|.+|...|++++|+..|+++++++|++..++..++.++..+|++++|+..+.+.
T Consensus 244 ~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999 899999999999999999999999999999999999999999999999999999999876543
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=1.4e-20 Score=187.69 Aligned_cols=216 Identities=16% Similarity=0.187 Sum_probs=152.5
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 461 KHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAM 540 (760)
Q Consensus 461 ~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~l 540 (760)
..|.++.++..+|.+++..|++++|+.+|+++++.+|.+. .++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------------------------~~~~~l 48 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----------------------------------LAWLVR 48 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------------------------------HHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----------------------------------HHHHHH
Confidence 3456677888888888888888888888888877777654 455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Q 004340 541 GNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL-EDFENGIRSYQSALR--VDARHYNSWYGLGMVYLRQEK 617 (760)
Q Consensus 541 a~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~-g~~e~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~ 617 (760)
|.++...|++++|+.+|++++..+|.+..++..+|.++... |++++|+.+|+++++ ..|....++..+|.++...|+
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence 66666666666666666666666666666666677777666 777777777777666 445556667777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK-KNPLPMYQKANILLSLEKFDEALEVLEEL 696 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~a 696 (760)
+++|+.+++++++..|.+..++..+|.++...|++++|+.+++++++..| .+...+..++.++...|++++|..+++.+
T Consensus 129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777 66666666777777777777777777777
Q ss_pred HHHCCCCHHHHHHH
Q 004340 697 KEYAPRESGVYALM 710 (760)
Q Consensus 697 l~~~p~~~~~~~~l 710 (760)
.+..|+++.+...+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 77777766655443
No 54
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=1.8e-20 Score=214.50 Aligned_cols=295 Identities=9% Similarity=0.028 Sum_probs=232.0
Q ss_pred HhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-H---------
Q 004340 443 SCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY-H--------- 512 (760)
Q Consensus 443 ~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~-~--------- 512 (760)
...|++++|..+|++++...|.+..+|..+|..+...|++++|..+|++++...| +.+.|..++.... .
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHH
Confidence 4589999999999999999999999999999999999999999999999999999 5666655553211 1
Q ss_pred -----------------------------------------ccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH------
Q 004340 513 -----------------------------------------LKEDMKLSYLAQELITTDRLAP--QSWCAMGNC------ 543 (760)
Q Consensus 513 -----------------------------------------l~~~~~a~~~~~~~l~~~p~~~--~~~~~la~~------ 543 (760)
.++.+++..++++++. .|... ..|...+..
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhch
Confidence 3445566667777776 34432 222211110
Q ss_pred ---------------------------------------------------------HHh------cCCH----HHHHHH
Q 004340 544 ---------------------------------------------------------YSL------QKDH----ETALKN 556 (760)
Q Consensus 544 ---------------------------------------------------------~~~------~g~~----~~A~~~ 556 (760)
.+. .++. ..|+..
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 000 0111 256678
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHH
Q 004340 557 FQRAVQLNPRFAYGHTLCGHEYVA-------LEDFE-------NGIRSYQSALR-VDARHYNSWYGLGMVYLRQEKFEFS 621 (760)
Q Consensus 557 ~~kal~~~p~~~~a~~~la~~~~~-------~g~~e-------~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~A 621 (760)
|++++..+|.++.+|..+|..+.. .|+++ +|+..|+++++ ..|++..+|..+|.++...|++++|
T Consensus 261 y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 261 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 888888888888888888888876 68876 88889999987 7888888888899888888999999
Q ss_pred HHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHH
Q 004340 622 EHHFRMAFQISPHSS-VIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI-LLSLEKFDEALEVLEELKEY 699 (760)
Q Consensus 622 ~~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~-~~~~g~~~eA~~~l~~al~~ 699 (760)
...|+++++..|.++ .+|..+|.++.+.|++++|+.+|+++++..|.....+...+.+ +...|++++|..+|+++++.
T Consensus 341 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 341 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 999999988888875 5888888888888888999999999988888777777766665 34588999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004340 700 APRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 700 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
.|+++.+|..++.++...|+.++|...|++++...|.+++
T Consensus 421 ~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 421 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 9999999999999999999999999999999988765543
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=6.5e-21 Score=194.69 Aligned_cols=209 Identities=14% Similarity=0.130 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYS 545 (760)
Q Consensus 466 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~ 545 (760)
+.+++.+|.++...|++++|+.+|+++++.+|.+.. ++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~----------------------------------~~~~la~~~~ 82 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD----------------------------------AHAALAVVFQ 82 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHH----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHH----------------------------------HHHHHHHHHH
Confidence 566777788888888888888888887777665543 4444455555
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004340 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR--VDARHYNSWYGLGMVYLRQEKFEFSEH 623 (760)
Q Consensus 546 ~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~A~~ 623 (760)
..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++++. ..|.+..++..+|.++...|++++|+.
T Consensus 83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555555555555555555555555555555555555555 445555555555555555555555555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 004340 624 HFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (760)
Q Consensus 624 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 703 (760)
+|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..++.++...|++++|..+++++++..|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 163 YFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 55555555555555555555555555555555555555555555555555555555555666666666666666555555
Q ss_pred HHHHH
Q 004340 704 SGVYA 708 (760)
Q Consensus 704 ~~~~~ 708 (760)
+.+..
T Consensus 243 ~~~~~ 247 (252)
T 2ho1_A 243 LEYQE 247 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 56
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=9.7e-22 Score=215.01 Aligned_cols=303 Identities=13% Similarity=0.080 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccC---CCCHHHH--HH--HHHHHHHccCHHHHH-----------HHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKH---YNTGWVL--SQ--VGKAYFEVVDYLEAE-----------RAFTLAR 493 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~---p~~~~~l--~~--la~~~~~~g~~~~A~-----------~~~~~al 493 (760)
+-..|.+.+..+..+++++|..+++++.... ..+..++ +. ..+.....+++..+. ..++++-
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~ 91 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID 91 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH
Confidence 5567788999999999999999999874432 1334433 22 223333445555555 6666643
Q ss_pred HHCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004340 494 RASPYSLE------GMDIYSTVLYHLKEDMKLSYLAQELITT---DR---LAPQSWCAMGNCYSLQKDHETALKNFQRAV 561 (760)
Q Consensus 494 ~~~p~~~~------~~~~la~~l~~l~~~~~a~~~~~~~l~~---~p---~~~~~~~~la~~~~~~g~~~~A~~~~~kal 561 (760)
. .|.... .++..|.++...|++++|..+++++++. .+ ..+.+++.+|.+|...|++++|+.++.+++
T Consensus 92 ~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 92 K-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp H-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 333323 2344899999999999999999999987 22 246899999999999999999999999999
Q ss_pred HhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 562 QLNPR-------FAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYGLGMVYLRQEKFEFSEHHFRMA 628 (760)
Q Consensus 562 ~~~p~-------~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~a 628 (760)
.+.+. ...++..+|.+|...|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 171 EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 98433 34578999999999999999999999999875432 358999999999999999999999999
Q ss_pred HH-----hC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcCC---HHHHHHHHH
Q 004340 629 FQ-----IS-PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK-----KNPLPMYQKANILLSLEK---FDEALEVLE 694 (760)
Q Consensus 629 l~-----~~-p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p-----~~~~~~~~la~~~~~~g~---~~eA~~~l~ 694 (760)
++ .+ |....++..+|.++...|++++|+.++++++++.+ .....+..+|.++...|+ +++|+.+++
T Consensus 251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99 45 77788999999999999999999999999998843 233345679999999999 788888887
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 695 ELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 695 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
+. ...+....++..+|.+|...|++++|..+|++++++...
T Consensus 331 ~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 331 SK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 76 223344678899999999999999999999999986544
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=2.4e-21 Score=218.53 Aligned_cols=215 Identities=16% Similarity=0.168 Sum_probs=170.9
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004340 481 DYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED-MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQR 559 (760)
Q Consensus 481 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~-~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k 559 (760)
.+++|+..++++....|.+..++..+|.++...+++ ++|..+++++++.+|.++.+|+.+|.+|...|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 355556666666656666666666666666666666 6666666666666667777888888888888888888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHH
Q 004340 560 AVQLNPRFAYGHTLCGHEYVAL---------EDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ--------EKFEFSE 622 (760)
Q Consensus 560 al~~~p~~~~a~~~la~~~~~~---------g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~--------g~~~~A~ 622 (760)
+++++|+ ..++..+|.++... |++++|+.+|+++++++|++..+|+.+|.+|... |++++|+
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 8888887 68888888888888 8888888888888888888888888888888888 8888888
Q ss_pred HHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 623 HHFRMAFQISP---HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEEL 696 (760)
Q Consensus 623 ~~l~~al~~~p---~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 696 (760)
.+|+++++++| .++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++..+|++++|++.+.+.
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888888888 888888888888888888888888888888888888888888888888888888888776654
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=2e-20 Score=188.69 Aligned_cols=212 Identities=15% Similarity=0.186 Sum_probs=189.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 531 RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNP-RFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (760)
Q Consensus 531 p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p-~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la 609 (760)
+.++..|+.+|.++...|++++|+.+|++++.++| .+..+++.+|.++...|++++|+.+|+++++.+|.+..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45678999999999999999999999999999998 88999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChHHHHHHHHHH
Q 004340 610 MVYLRQEKFEFSEHHFRMAFQISPHSS-------VIMSYLGTAMHALKRSGEAIEMMEKAILADKK--NPLPMYQKANIL 680 (760)
Q Consensus 610 ~~~~~~g~~~~A~~~l~~al~~~p~~~-------~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~--~~~~~~~la~~~ 680 (760)
.+|...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+++++++|+ ++.+++.+|.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999999999999999999999998 66999999999999999999999999999999 899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 004340 681 LSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEK 749 (760)
Q Consensus 681 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~ 749 (760)
...| ...++++..+.+.....+ .+......+.+++|+.+|+++++++|++.++...+..+..
T Consensus 164 ~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 7654 455677777776665443 4455667788999999999999999999998887776654
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.5e-20 Score=199.52 Aligned_cols=222 Identities=7% Similarity=-0.057 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Q 004340 483 LEAERAFTLARRASPYSLEGMDIYSTVLYH-------LKED-------MKLSYLAQELIT-TDRLAPQSWCAMGNCYSLQ 547 (760)
Q Consensus 483 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~-------l~~~-------~~a~~~~~~~l~-~~p~~~~~~~~la~~~~~~ 547 (760)
++|+..|++++..+|.++.+|..++..+.. .|+. ++|...+++++. .+|.+..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 567777777777777777777777766653 2443 566666666666 4666666666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 004340 548 KDHETALKNFQRAVQLNPRFAY-GHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR-QEKFEFSEHHF 625 (760)
Q Consensus 548 g~~~~A~~~~~kal~~~p~~~~-a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~A~~~l 625 (760)
|++++|+..|++++++.|.+.. +|..+|.++...|++++|+..|+++++..|....+|...+.+... .|++++|+.+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666666666654 666666666666666666666666666666666665555544332 56666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 004340 626 RMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA---DK-KNPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (760)
Q Consensus 626 ~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~---~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 701 (760)
+++++.+|+++.+|..+|.++...|++++|+.+|++++.. .| ....+|..++..+...|++++|..+++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 6666666666666666666666666666666666666664 33 2455666666666666666666666666666666
Q ss_pred CCH
Q 004340 702 RES 704 (760)
Q Consensus 702 ~~~ 704 (760)
++.
T Consensus 273 ~~~ 275 (308)
T 2ond_A 273 EEY 275 (308)
T ss_dssp TTT
T ss_pred ccc
Confidence 543
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=3e-20 Score=197.17 Aligned_cols=223 Identities=10% Similarity=0.051 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSL-------QKDH-------ETALKNFQRAVQ-LNPRFAYGHTLCGHEYVAL 581 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~kal~-~~p~~~~a~~~la~~~~~~ 581 (760)
.+|...+++++..+|.++.+|+.+|.++.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 578889999999999999999999999874 5885 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHH
Q 004340 582 EDFENGIRSYQSALRVDARHYN-SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA-LKRSGEAIEMM 659 (760)
Q Consensus 582 g~~e~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-~g~~~eAl~~l 659 (760)
|++++|...|++++++.|.+.. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++++|+.+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887 999999999999999999999999999999998888777666544 79999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 660 EKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEY---AP-RESGVYALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 660 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
+++++..|+++.+|..++.++...|++++|+.+|++++.. .| +...+|..++..+...|++++|...++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999995 45 3788999999999999999999999999999999
Q ss_pred ChHH
Q 004340 736 SATD 739 (760)
Q Consensus 736 ~~~~ 739 (760)
++.+
T Consensus 273 ~~~~ 276 (308)
T 2ond_A 273 EEYE 276 (308)
T ss_dssp TTTS
T ss_pred cccc
Confidence 8654
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.85 E-value=2.6e-19 Score=180.46 Aligned_cols=212 Identities=13% Similarity=0.143 Sum_probs=139.2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 463 YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP-YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMG 541 (760)
Q Consensus 463 p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la 541 (760)
+.++.+++.+|.+++..|+|++|+..|+++++.+| .+. .+++.+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----------------------------------~~~~~~~ 49 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----------------------------------VTAYNCG 49 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----------------------------------HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----------------------------------HHHHHHH
Confidence 44668889999999999999999999999988887 554 4445556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHH
Q 004340 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY-------NSWYGLGMVYLR 614 (760)
Q Consensus 542 ~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~-------~a~~~la~~~~~ 614 (760)
.++...|++++|+.+|++++..+|.+..++..+|.+|...|++++|+..|+++++.+|++. .++..+|.++..
T Consensus 50 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~ 129 (228)
T 4i17_A 50 VCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ 129 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666655 446666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004340 615 QEKFEFSEHHFRMAFQISPH--SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEV 692 (760)
Q Consensus 615 ~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 692 (760)
.|++++|+..|+++++++|+ ++.++..+|.++...| ...++++..+.+.....+ .+......+.+++|+.+
T Consensus 130 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~ 202 (228)
T 4i17_A 130 AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDY 202 (228)
T ss_dssp TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHH
Confidence 66666666666666666666 6666666666665443 333455555554443332 33334455667777777
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHH
Q 004340 693 LEELKEYAPRESGVYALMGKIYK 715 (760)
Q Consensus 693 l~~al~~~p~~~~~~~~la~~~~ 715 (760)
|++++++.|++..+...++.+..
T Consensus 203 ~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 203 LGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHhhcCCCCHHHHHHHHHHHH
Confidence 77777777777777777766643
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=2e-20 Score=219.95 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=135.6
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGL 608 (760)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~l 608 (760)
..|+++++|..+|.+|..+|++++|+.+|+++++++|++..++..+|.+|...|++++|+..|+++++++|++..+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35677777888888888888888888888888888887777777788888888888888888888877777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 004340 609 GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDE 688 (760)
Q Consensus 609 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e 688 (760)
|.+|..+|++++|++.|+++++++|++..++.++|.++...|++++|+..|+++++++|+++.++.++|.+|..+|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHCCC
Q 004340 689 ALEVLEELKEYAPR 702 (760)
Q Consensus 689 A~~~l~~al~~~p~ 702 (760)
|++.+++++++.|+
T Consensus 164 A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 164 YDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh
Confidence 77777777776553
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.84 E-value=2.9e-20 Score=218.44 Aligned_cols=172 Identities=12% Similarity=0.185 Sum_probs=111.9
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 496 SPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCG 575 (760)
Q Consensus 496 ~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la 575 (760)
.|++.+++..+|.++..+|++++|+.+++++++++|+++.+|+.+|.+|...|++++|+.+|+++++++|++..+|..+|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 004340 576 HEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEA 655 (760)
Q Consensus 576 ~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA 655 (760)
.+|...|++++|+++|+++++++|++..+|..+|.+|..+|++++|+.+|+++++++|+++.++.++|.++...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCC
Q 004340 656 IEMMEKAILADK 667 (760)
Q Consensus 656 l~~l~~al~~~p 667 (760)
++.+++++++.|
T Consensus 165 ~~~~~kal~l~~ 176 (723)
T 4gyw_A 165 DERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCh
Confidence 666666665543
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=197.50 Aligned_cols=252 Identities=14% Similarity=0.061 Sum_probs=163.4
Q ss_pred ccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHH
Q 004340 458 LPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELI-TTDRLAPQS 536 (760)
Q Consensus 458 ~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l-~~~p~~~~~ 536 (760)
....+|....++..+|.+++..|++++|+.+|+++++.... .. ...+....+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---------------------------~~~~~~~~~~~~ 71 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK---------------------------TSGHDHPDVATM 71 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------------------HHCSSSHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------------------------HcCCCCHHHHHH
Confidence 34456677788888888888888888888888888774110 00 001222455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQL--------NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD--------AR 600 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~--------~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~--------p~ 600 (760)
+..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++++. +.
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (311)
T 3nf1_A 72 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 151 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 666777777777777777777777665 24445666777777777777777777777777653 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----
Q 004340 601 HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI--------SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK----- 667 (760)
Q Consensus 601 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p----- 667 (760)
...++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+++++++..+
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 231 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4566777777777777777777777777776 455556677777777777777777777777776432
Q ss_pred ----CCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 668 ----KNP------LPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 668 ----~~~------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
... ..+...+..+...+.+.+|+..++++....|....++..+|.+|...|++++|+.+|++++++.|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 222 233444555566677777888888888888888888889999999999999999999999888775
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=9.2e-21 Score=199.09 Aligned_cols=228 Identities=14% Similarity=0.093 Sum_probs=182.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 004340 531 RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL--------NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV----- 597 (760)
Q Consensus 531 p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~--------~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~----- 597 (760)
|..+.++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 344678899999999999999999999999985 5667788999999999999999999999999987
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-
Q 004340 598 ---DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS--------PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA- 665 (760)
Q Consensus 598 ---~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~--------p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~- 665 (760)
.+....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.+|+++++.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35567889999999999999999999999999874 555678999999999999999999999999998
Q ss_pred -------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHcCCHHHH
Q 004340 666 -------DKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR---------------ESGVYALMGKIYKRRNMHEKA 723 (760)
Q Consensus 666 -------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A 723 (760)
.|....++..+|.++...|++++|+.+++++++..+. ....+..++..+...+.+.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 5666778999999999999999999999999986432 234566667777778888889
Q ss_pred HHHHHHHHhcCCChHHHHHHHH-HHHhcCCCCcccc
Q 004340 724 MLHFGLALDLKPSATDVATIKA-AIEKLHVPDEIED 758 (760)
Q Consensus 724 ~~~~~~al~l~p~~~~a~~~l~-~l~~l~~~deaee 758 (760)
...++++....|....++..++ .+...+++++|.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999998888777666 5678888877754
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.83 E-value=1e-19 Score=203.96 Aligned_cols=277 Identities=12% Similarity=0.045 Sum_probs=154.1
Q ss_pred HhcCCh---HHHHHHHhcccccCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc
Q 004340 443 SCMYRC---KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVV-----DYLEAERAFTLARRASPYSLEGMDIYSTVLYHLK 514 (760)
Q Consensus 443 ~~~g~~---~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~ 514 (760)
...|++ ++|+.+|+++.+. ++.+++.+|.+++..+ ++++|+.+|+++++. .+..++..++.++...+
T Consensus 46 ~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 46 VGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYP 120 (452)
T ss_dssp ----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCG
T ss_pred HccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCC
Confidence 445566 7777777777755 5567777787666655 777888888887774 34457777777777665
Q ss_pred CHH---HHHHHHHHHHHh---------------------------------CCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 004340 515 EDM---KLSYLAQELITT---------------------------------DRLAPQSWCAMGNCYSLQK---DHETALK 555 (760)
Q Consensus 515 ~~~---~a~~~~~~~l~~---------------------------------~p~~~~~~~~la~~~~~~g---~~~~A~~ 555 (760)
... ++...+.++... ...++.+++.+|.+|...| ++++|+.
T Consensus 121 ~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 121 HSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp GGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHH
Confidence 411 122222221111 1223346666666666666 6666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHH
Q 004340 556 NFQRAVQLNPRFAYGHTLCGHEYVAL----EDFENGIRSYQSALRVDARHYNSWYGLGMV-Y--LRQEKFEFSEHHFRMA 628 (760)
Q Consensus 556 ~~~kal~~~p~~~~a~~~la~~~~~~----g~~e~A~~~~~~al~~~p~~~~a~~~la~~-~--~~~g~~~~A~~~l~~a 628 (760)
+|+++....+.....++.+|.+|... +++++|+.+|+++. |+++.+++.+|.+ + ...+++++|+.+|+++
T Consensus 201 ~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 201 QMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNG 277 (452)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 66666666666666666666666544 56666666666665 5666666666666 3 3456666666666666
Q ss_pred HHhCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 004340 629 FQISPHSSVIMSYLGTAMHALK-----RSGEAIEMMEKAILADKKNPLPMYQKANILLS----LEKFDEALEVLEELKEY 699 (760)
Q Consensus 629 l~~~p~~~~~~~~la~~~~~~g-----~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~ 699 (760)
.+. .++.+++.+|.+|. .| ++++|+.+|+++. +.++.+++.+|.+|.. ..++++|+.+|+++.+
T Consensus 278 a~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~- 350 (452)
T 3e4b_A 278 RAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR- 350 (452)
T ss_dssp HHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-
T ss_pred HHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-
Confidence 543 35666666666665 33 6666666666666 5666666666666655 2366666666666654
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 004340 700 APRESGVYALMGKIYKR----RNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 700 ~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p 735 (760)
+.++.+.+.||.+|.. ..++.+|..+|+++.+..+
T Consensus 351 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 351 -NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp -TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred -hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3345566666666653 3466666666666666543
No 67
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.83 E-value=2.4e-18 Score=180.99 Aligned_cols=225 Identities=10% Similarity=-0.014 Sum_probs=159.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHH
Q 004340 521 YLAQELITTDRLAPQSWCAMGNCYSLQK--DHETALKNFQRAVQLNPRFAYGHTLCGHEY----VAL---EDFENGIRSY 591 (760)
Q Consensus 521 ~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~kal~~~p~~~~a~~~la~~~----~~~---g~~e~A~~~~ 591 (760)
.+..+++.++|.+..+|...+.++...+ ++++++.++.+++..+|++..+|...+.++ ... +++++++.++
T Consensus 54 ~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~ 133 (306)
T 3dra_A 54 HITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDIL 133 (306)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHH
T ss_pred HHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 3333444444444555555666666555 677777777777777777777777776666 555 6677777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHH
Q 004340 592 QSALRVDARHYNSWYGLGMVYLRQEKFE--FSEHHFRMAFQISPHSSVIMSYLGTAMHALKR------SGEAIEMMEKAI 663 (760)
Q Consensus 592 ~~al~~~p~~~~a~~~la~~~~~~g~~~--~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~------~~eAl~~l~~al 663 (760)
.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|.+..+|...+.++...++ ++++++++.+++
T Consensus 134 ~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI 213 (306)
T 3dra_A 134 EAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKI 213 (306)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 7777777777777777777777777776 77777777777777777777777777777766 777788888888
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCChH
Q 004340 664 LADKKNPLPMYQKANILLSLEKFDE-ALEVLEELKEYA---PRESGVYALMGKIYKRRNMHEKAMLHFGLALD-LKPSAT 738 (760)
Q Consensus 664 ~~~p~~~~~~~~la~~~~~~g~~~e-A~~~l~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-l~p~~~ 738 (760)
..+|.+..+|+.++.++...|+..+ ...++++++++. |..+.++..++.+|.+.|+.++|+++|+.+.+ ++|-..
T Consensus 214 ~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~ 293 (306)
T 3dra_A 214 VKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRS 293 (306)
T ss_dssp HHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred HhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHH
Confidence 8888888888777777777777444 444556665554 66777888888888888888888888888775 688777
Q ss_pred HHHHHHH
Q 004340 739 DVATIKA 745 (760)
Q Consensus 739 ~a~~~l~ 745 (760)
..+..+.
T Consensus 294 ~yW~~~~ 300 (306)
T 3dra_A 294 NFWDYQI 300 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665443
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.82 E-value=4.5e-19 Score=193.60 Aligned_cols=302 Identities=10% Similarity=0.062 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhccccc---CCCCHHHHHHHHHHHH----HccCHHHHH---------HHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHK---HYNTGWVLSQVGKAYF----EVVDYLEAE---------RAFTLARRA 495 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~---~p~~~~~l~~la~~~~----~~g~~~~A~---------~~~~~al~~ 495 (760)
+-..|.+.+.++..+++++|+.+++++... -..+..+++..+...+ ..+++..+. ..++++-..
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 455667788889999999999999986332 1134444433332222 223333333 444443221
Q ss_pred CCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 004340 496 SPY-----SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDR------LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN 564 (760)
Q Consensus 496 ~p~-----~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~ 564 (760)
... ....++..|..+...|++.+|...+++++...+ ..+.+++.+|.+|...|++++|+.++++++.+.
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 110 112456678889999999999999999997632 245789999999999999999999999999874
Q ss_pred CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 004340 565 PR-------FAYGHTLCGHEYVALEDFENGIRSYQSALRVDA------RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQ- 630 (760)
Q Consensus 565 p~-------~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~l~~al~- 630 (760)
+. ...++..+|.+|...|++++|+.+|++++++.+ ....++..+|.+|...|++++|+.+|++++.
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 32 245788999999999999999999999998643 1246789999999999999999999999999
Q ss_pred ----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Q 004340 631 ----ISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK-----NPLPMYQKANILLSLEK---FDEALEVLEELKE 698 (760)
Q Consensus 631 ----~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~-----~~~~~~~la~~~~~~g~---~~eA~~~l~~al~ 698 (760)
.+|....++..+|.++...|++++|+.++++++++.+. ....+..++.++...++ +.+|+.++++. .
T Consensus 252 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~ 330 (378)
T 3q15_A 252 SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-N 330 (378)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-T
T ss_pred HHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-C
Confidence 67777889999999999999999999999999998543 23455668888888888 88888888762 1
Q ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004340 699 YAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLK 734 (760)
Q Consensus 699 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 734 (760)
..+....++..+|.+|...|++++|..+|++++++.
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 223345678899999999999999999999998754
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=5.1e-19 Score=182.49 Aligned_cols=196 Identities=12% Similarity=0.131 Sum_probs=142.1
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 004340 528 TTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARH--- 601 (760)
Q Consensus 528 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~---~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~--- 601 (760)
..+|.++..++.+|..+...|++++|+..|++++..+|.+ ..+++.+|.+|...|++++|+..|+++++..|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4567778888888888888888888888888888888887 7888888888888888888888888888887743
Q ss_pred HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 004340 602 YNSWYGLGMVYLR--------QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPM 673 (760)
Q Consensus 602 ~~a~~~la~~~~~--------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~ 673 (760)
..+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....+. ....+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~ 151 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHH
Confidence 5678888888888 8888888888888888888876554333222111111 11225
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCChHHH
Q 004340 674 YQKANILLSLEKFDEALEVLEELKEYAPR---ESGVYALMGKIYKRR----------NMHEKAMLHFGLALDLKPSATDV 740 (760)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~l~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~l~p~~~~a 740 (760)
+.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.+|..+ |++++|+..|+++++.+|+++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 66777777777777777777777777666 345677777777765 67777777777777777776543
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.82 E-value=1.6e-18 Score=194.12 Aligned_cols=294 Identities=13% Similarity=0.040 Sum_probs=218.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Q 004340 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDY---LEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (760)
Q Consensus 437 ~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 513 (760)
..|..++..|++++|+.+|+++.+. .++.+++.+|.+|+..|++ ++|+.+|+++++. ++.++..++.++...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 3566678889999999999998765 4567888999999999999 9999999999976 677889999977776
Q ss_pred c-----CHHHHHHHHHHHHHhCCCC---------------------------------HHHHHHHHHHHHhcC----CHH
Q 004340 514 K-----EDMKLSYLAQELITTDRLA---------------------------------PQSWCAMGNCYSLQK----DHE 551 (760)
Q Consensus 514 ~-----~~~~a~~~~~~~l~~~p~~---------------------------------~~~~~~la~~~~~~g----~~~ 551 (760)
+ +..+|..+++++++..+.. +.+++.+|.+|...+ ..+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence 6 6889999999998854322 123344444454444 344
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHH
Q 004340 552 TALKNFQRAVQLNPRFAYGHTLCGHEYVALE---DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ----EKFEFSEHH 624 (760)
Q Consensus 552 ~A~~~~~kal~~~p~~~~a~~~la~~~~~~g---~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~----g~~~~A~~~ 624 (760)
+|..+++.+...+|. +++.+|.+|...| ++++|+.+|+++.+..+.....++.+|.+|... +++++|+.+
T Consensus 163 ~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 163 DVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 455566666555554 9999999999999 999999999999999999999999999999766 799999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-----CHHHHHHHHHHH
Q 004340 625 FRMAFQISPHSSVIMSYLGTA-M--HALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLE-----KFDEALEVLEEL 696 (760)
Q Consensus 625 l~~al~~~p~~~~~~~~la~~-~--~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g-----~~~eA~~~l~~a 696 (760)
|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+.. ++.+++.+|.+|. .| ++++|+.+|+++
T Consensus 240 ~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 240 LEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 99997 8999999999999 4 46889999999999999754 8999999999998 55 999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 004340 697 KEYAPRESGVYALMGKIYKR----RNMHEKAMLHFGLALDLKPSATDVATIKAAIEK 749 (760)
Q Consensus 697 l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~ 749 (760)
. +.++.+++.||.+|.. ..++++|+.+|+++.+.. +..+...+..+..
T Consensus 314 a---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 314 V---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFS 365 (452)
T ss_dssp T---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHH
T ss_pred h---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 8 8899999999999987 449999999999998854 4455555665433
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=1.4e-18 Score=179.28 Aligned_cols=172 Identities=14% Similarity=0.131 Sum_probs=131.2
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 004340 562 QLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS--- 635 (760)
Q Consensus 562 ~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--- 635 (760)
..+|..+..++.+|..++..|++++|+..|+++++..|.+ ..+++.+|.+|...|++++|+..|+++++..|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4567788888888888888888888888888888888887 7888888888888888888888888888887754
Q ss_pred HHHHHHHHHHHHH--------cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 004340 636 SVIMSYLGTAMHA--------LKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVY 707 (760)
Q Consensus 636 ~~~~~~la~~~~~--------~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 707 (760)
+.+++.+|.++.. .|++++|+..|+++++..|+++.+...+..+....++ ....+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~ 151 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHH
Confidence 5678888888888 8888888888888888888876555444333221111 12347
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHH-HHHhc
Q 004340 708 ALMGKIYKRRNMHEKAMLHFGLALDLKPSA---TDVATIKA-AIEKL 750 (760)
Q Consensus 708 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~---~~a~~~l~-~l~~l 750 (760)
+.+|.+|...|++++|+..|+++++..|++ ..++..++ ++..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999984 44444444 34444
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.81 E-value=2.6e-19 Score=195.64 Aligned_cols=234 Identities=12% Similarity=0.057 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFTLARRA---SPY---SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLA------- 533 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~------- 533 (760)
..++.+|..++..|+|++|+.+|++++++ .++ ...++..+|.++...|++.+|..++.++++..+..
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 34566999999999999999999999987 232 45788999999999999999999999999874433
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCC
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALEDFENGIRSYQSALR-----VD-ARH 601 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~------~~a~~~la~~~~~~g~~e~A~~~~~~al~-----~~-p~~ 601 (760)
..++..+|.+|...|++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.+|+++++ .+ |..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 4688999999999999999999999999875433 25889999999999999999999999999 46 777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChHHH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS-----PHSSVIMSYLGTAMHALKR---SGEAIEMMEKAILADKKNPLPM 673 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~-----p~~~~~~~~la~~~~~~g~---~~eAl~~l~~al~~~p~~~~~~ 673 (760)
..++..+|.+|...|++++|+.++++++++. |.....+..+|.++...|+ +++|+.++++. ...+....++
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 8899999999999999999999999999884 3333446779999999999 78888888776 2223345678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 004340 674 YQKANILLSLEKFDEALEVLEELKEYAP 701 (760)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~l~~al~~~p 701 (760)
..+|.+|...|++++|+.++++++++..
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998754
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=5e-19 Score=208.50 Aligned_cols=188 Identities=9% Similarity=-0.011 Sum_probs=176.4
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004340 528 TTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAV--------QLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA 599 (760)
Q Consensus 528 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal--------~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p 599 (760)
..+|.++.+++..| ...|++++|++.|++++ +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35778888888777 78899999999999999 89999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 004340 600 RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI 679 (760)
Q Consensus 600 ~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~ 679 (760)
++..+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++ +..|+++++++|++..+++++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Q 004340 680 LLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNM 719 (760)
Q Consensus 680 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 719 (760)
+..+|++++|+..|+++++++|++..+++.+|.++...|+
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999987665
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.81 E-value=9.9e-18 Score=182.06 Aligned_cols=266 Identities=7% Similarity=-0.122 Sum_probs=153.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCCCC-H----HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH------HH
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNT-G----WVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL------EG 502 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~-~----~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~ 502 (760)
..+..|..++..|++++|+..+++++...|.. . .++..+|.++...|++++|+..+++++...|... .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34456677788899999999998877665533 2 2677888999999999999999999988755321 12
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHH
Q 004340 503 MDIYSTVLYHLKEDMKLSYLAQELITTD--------RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR-----FAY 569 (760)
Q Consensus 503 ~~~la~~l~~l~~~~~a~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~-----~~~ 569 (760)
+..++.++...|++.+|..++++++... |....++..+|.++...|++++|+.++++++...+. ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 3445555666666666666666555543 122334455566666666666666666666655443 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH
Q 004340 570 GHTLCGHEYVALEDFENGIRSYQSALRVDAR--HYNSW-----YGLGMVYLRQEKFEFSEHHFRMAFQISPHS----SVI 638 (760)
Q Consensus 570 a~~~la~~~~~~g~~e~A~~~~~~al~~~p~--~~~a~-----~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~ 638 (760)
++..+|.++...|++++|..++++++.+.+. ....+ ..++.++...|++++|..++++++...+.. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 4555566666666666666666665554211 11111 122333555566666666666555544332 223
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004340 639 MSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEELKEY 699 (760)
Q Consensus 639 ~~~la~~~~~~g~~~eAl~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 699 (760)
+..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|...+++++.+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455556666666666666666555543221 124455555566666666666666665554
No 75
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.80 E-value=1.5e-17 Score=174.88 Aligned_cols=240 Identities=10% Similarity=0.046 Sum_probs=165.5
Q ss_pred HhcCCh-HHHHHHHhcccccCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH
Q 004340 443 SCMYRC-KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVV--DYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKL 519 (760)
Q Consensus 443 ~~~g~~-~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a 519 (760)
...|.+ ++|+.++.+++..+|+...+|...+.++...| ++++++.++++++..+|.+..+|...+.++.++.
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~----- 117 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM----- 117 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH-----
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH-----
Confidence 334444 57777777777777777777777777777777 7777777777777777766655555554441100
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHH
Q 004340 520 SYLAQELITTDRLAPQSWCAMGNCYSLQ---KDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFE--NGIRSYQSA 594 (760)
Q Consensus 520 ~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e--~A~~~~~~a 594 (760)
... +++++++.++.++++.+|.+..+|...+.+....|.++ ++++++.++
T Consensus 118 -------------------------~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~ 172 (306)
T 3dra_A 118 -------------------------ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKV 172 (306)
T ss_dssp -------------------------HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred -------------------------HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 333 56667777777777777777777777777777777666 777777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHhC-
Q 004340 595 LRVDARHYNSWYGLGMVYLRQEK------FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGE-AIEMMEKAILAD- 666 (760)
Q Consensus 595 l~~~p~~~~a~~~la~~~~~~g~------~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e-Al~~l~~al~~~- 666 (760)
++.+|.+..+|...+.++...+. ++++++++.+++..+|.+..+|+.++.++...|+..+ ...++.+++.++
T Consensus 173 i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 173 IDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp HHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred HHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence 77777777777777777766665 7777777777777777777777777777777776444 444666665554
Q ss_pred --CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCHHHHHHHHH
Q 004340 667 --KKNPLPMYQKANILLSLEKFDEALEVLEELKE-YAPRESGVYALMGK 712 (760)
Q Consensus 667 --p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-~~p~~~~~~~~la~ 712 (760)
+.++.++..++.+|.+.|+.++|+++|+.+.+ .+|-....|...+.
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 66677777777777777777777777777776 67776666665554
No 76
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=1.9e-16 Score=189.12 Aligned_cols=262 Identities=13% Similarity=0.097 Sum_probs=222.2
Q ss_pred HHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Q 004340 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (760)
Q Consensus 437 ~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~ 516 (760)
..|..+...|++++|++.|.++ +++..+..+|.++.+.|+|++|+++|..+++..+.. ..-..++.+|.++++.
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCH
Confidence 3445558899999999999886 778899999999999999999999999999988542 2222488888888887
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~ 596 (760)
.+...+. ...+...|..+|..+...|+|++|+.+|.++ ..|..+|.+|...|++++|+++++++
T Consensus 1184 eele~fI------~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1184 AELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred HHHHHHH------hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence 7644442 2334567788999999999999999999996 47899999999999999999999998
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 004340 597 VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676 (760)
Q Consensus 597 ~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~l 676 (760)
.+..+|...+.++...|+|..|..+... +..+ ++.+..++..|...|.+++|+.+++.++.+++.+...+..+
T Consensus 1248 ---~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A 1248 ---NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred ---CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHH
Confidence 5579999999999999999999998874 4333 55566889999999999999999999999999999999888
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 677 ANILLSL--EKFDEALEVLEELKEYAP-----RESGVYALMGKIYKRRNMHEKAMLHF 727 (760)
Q Consensus 677 a~~~~~~--g~~~eA~~~l~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~ 727 (760)
|.+|.+- ++..++++.|...+.+.+ .++..|..+..+|.+-|+++.|+..+
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 8887654 578889999998888766 67889999999999999999999443
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.79 E-value=5.8e-18 Score=162.86 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA 648 (760)
Q Consensus 569 ~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 648 (760)
.++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 649 LKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFG 728 (760)
Q Consensus 649 ~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 728 (760)
.|++++|+.++++++...|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+.+|+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66777777777776666666666677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCCChH
Q 004340 729 LALDLKPSAT 738 (760)
Q Consensus 729 ~al~l~p~~~ 738 (760)
++++++|++.
T Consensus 169 ~~~~~~~~~~ 178 (186)
T 3as5_A 169 KANELDEGAS 178 (186)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHcCCCch
Confidence 7777666654
No 78
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=2e-18 Score=203.38 Aligned_cols=191 Identities=11% Similarity=-0.029 Sum_probs=107.1
Q ss_pred cccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 004340 457 KLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLAR--------RASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELIT 528 (760)
Q Consensus 457 ~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~ 528 (760)
.++..+|.++.+++..| +..|++++|+..|++++ +.+|.+..++..++.++...|++++|...++++++
T Consensus 385 ~~p~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 385 SVPLVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CCBCCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCccCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 34556666666666655 66777777777777777 55565555555555555555555555555555555
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004340 529 TDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGL 608 (760)
Q Consensus 529 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~l 608 (760)
.+|.++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++ +..|+++++++|++..+|+.+
T Consensus 462 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~l 540 (681)
T 2pzi_A 462 RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGL 540 (681)
T ss_dssp HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555 555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004340 609 GMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR 651 (760)
Q Consensus 609 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 651 (760)
|.++..+|++++|+..|+++++++|++..++..+|.++...++
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 5555555555555555555555555555555555555544333
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.79 E-value=2e-18 Score=181.58 Aligned_cols=202 Identities=13% Similarity=0.085 Sum_probs=164.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 004340 541 GNCYSLQKDHETALKNFQRAVQLNPR------FAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYGL 608 (760)
Q Consensus 541 a~~~~~~g~~~~A~~~~~kal~~~p~------~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~------~~a~~~l 608 (760)
|.+|...|++++|+.+|.+++.+.+. .+.++..+|.+|...|++++|+.+|++++++.+.. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56677888999999999988887432 25678889999999999999999999999886543 4578899
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH-------HHH
Q 004340 609 GMVYLRQ-EKFEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPL-------PMY 674 (760)
Q Consensus 609 a~~~~~~-g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~-------~~~ 674 (760)
|.+|... |++++|+.+|++++++.|.. ..++..+|.++...|++++|+.+|++++++.|.+.. ++.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999996 99999999999999987754 467889999999999999999999999999887653 578
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCChHHHHH
Q 004340 675 QKANILLSLEKFDEALEVLEELKEYAPRESG-----VYALMGKIYK--RRNMHEKAMLHFGLALDLKPSATDVAT 742 (760)
Q Consensus 675 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~l~p~~~~a~~ 742 (760)
.+|.++..+|++++|+..|++++++.|.... .+..++..+. ..+++++|+..|++++.++|....+..
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 8999999999999999999999999887544 3445566664 457899999999999999998865544
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=1.1e-17 Score=160.86 Aligned_cols=171 Identities=16% Similarity=0.128 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~ 613 (760)
...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVL 693 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 693 (760)
..|++++|+.++++++...|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+.++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCH
Q 004340 694 EELKEYAPRES 704 (760)
Q Consensus 694 ~~al~~~p~~~ 704 (760)
+++++..|++.
T Consensus 168 ~~~~~~~~~~~ 178 (186)
T 3as5_A 168 KKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHcCCCch
Confidence 99999877654
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.78 E-value=6.2e-17 Score=175.72 Aligned_cols=270 Identities=18% Similarity=0.059 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------
Q 004340 466 GWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL-----EGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAP------ 534 (760)
Q Consensus 466 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~------ 534 (760)
..++..+|.+++..|++++|+.++++++...|... .++..++.++...|++++|...+++++...+...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45678899999999999999999999999887542 2567888999999999999999999998755432
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLN--------PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR-----H 601 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~--------p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~-----~ 601 (760)
.++..+|.++...|++++|+.++++++.+. |....++..+|.++...|++++|..++++++...+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 346789999999999999999999999874 334567888999999999999999999999998764 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-HHHHH----HHHHHHHHcCChHHHHHHHHHHHHhCCCC----h
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH--S-SVIMS----YLGTAMHALKRSGEAIEMMEKAILADKKN----P 670 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~-~~~~~----~la~~~~~~g~~~eAl~~l~~al~~~p~~----~ 670 (760)
..++..+|.++...|++++|..++++++.+.+. . ..... .++.++...|++++|..++++++...+.. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 567889999999999999999999999887332 2 22221 34566889999999999999998876653 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 671 LPMYQKANILLSLEKFDEALEVLEELKEYAPR------ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
..+..++.++...|++++|+..+++++...+. ...++..+|.++...|++++|...|++++.+.+
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 35678999999999999999999999886432 235788899999999999999999999998654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=5.9e-18 Score=184.67 Aligned_cols=248 Identities=13% Similarity=0.066 Sum_probs=200.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhcccccC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Q 004340 425 GASDLLGLLRILGEGYRMSCMYRCKDALDVYLKLPHKH------YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPY 498 (760)
Q Consensus 425 ~~~~l~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~------p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~ 498 (760)
..+.....+..+..|..++..|++++|+..|++++... +..+.++..+|.+|+..|++++|+.+++++++..+.
T Consensus 94 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 173 (378)
T 3q15_A 94 KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN 173 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 34556677778889999999999999999999876542 235678999999999999999999999999887554
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHH
Q 004340 499 SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNP------RFAYGHT 572 (760)
Q Consensus 499 ~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p------~~~~a~~ 572 (760)
..... +..+.++..+|.+|...|++++|+.+|++++.+.+ ....++.
T Consensus 174 ~~~~~---------------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 226 (378)
T 3q15_A 174 HPLYS---------------------------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226 (378)
T ss_dssp STTCH---------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCch---------------------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22100 01146778899999999999999999999998632 1245788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHH
Q 004340 573 LCGHEYVALEDFENGIRSYQSALR-----VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP-----HSSVIMSYL 642 (760)
Q Consensus 573 ~la~~~~~~g~~e~A~~~~~~al~-----~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~~~~~~~~l 642 (760)
.+|.+|...|++++|+.+|++++. .+|....++..+|.++...|++++|+.++++++++.+ .....+..+
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 306 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL 306 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999 6777788999999999999999999999999999844 334456778
Q ss_pred HHHHHHcCC---hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 004340 643 GTAMHALKR---SGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (760)
Q Consensus 643 a~~~~~~g~---~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 700 (760)
+.++...++ +.+|+.++++. ...+....++..+|.+|...|++++|+.+|+++++..
T Consensus 307 ~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 307 QAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888888888 88888888762 1222334677889999999999999999999998753
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.77 E-value=1.4e-17 Score=165.83 Aligned_cols=195 Identities=11% Similarity=0.005 Sum_probs=133.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~ 612 (760)
+++.++..|..+...|++++|+.+|++++..+|+++.+++..+. .... .......+.+|.+|
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~~-------------~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKNS-------------EISSKLATELALAY 64 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTTS-------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cchh-------------hhhHHHHHHHHHHH
Confidence 34555566666666666666666666666666655555544220 0000 00012233488888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--HHHHH
Q 004340 613 LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK--FDEAL 690 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~--~~eA~ 690 (760)
...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|+..|+ ...+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888876654 44556
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004340 691 EVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAI 747 (760)
Q Consensus 691 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l 747 (760)
..+++++...| ...+++.+|.++...|++++|+.+|+++++++|+... ...+..+
T Consensus 145 ~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~-~~~l~~i 199 (208)
T 3urz_A 145 TDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA-QKTLDKI 199 (208)
T ss_dssp HHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH-HHHHHHH
T ss_pred HHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH-HHHHHHH
Confidence 66666643222 2346778888888899999999999999999998653 3334433
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.77 E-value=2.4e-18 Score=177.53 Aligned_cols=230 Identities=16% Similarity=0.090 Sum_probs=178.0
Q ss_pred HccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004340 478 EVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTD-RLAPQSWCAMGNCYSLQKDHETALKN 556 (760)
Q Consensus 478 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 556 (760)
..|++++|+.+|+++++.. .+....+ |..+.++..+|.++...|++++|+.+
T Consensus 13 ~~~~~~~A~~~~~~al~~~---------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 65 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDL---------------------------EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHH---------------------------HHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---------------------------HHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 4567777777777776631 2222212 34567888999999999999999999
Q ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHH
Q 004340 557 FQRAVQL--------NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV--------DARHYNSWYGLGMVYLRQEKFEF 620 (760)
Q Consensus 557 ~~kal~~--------~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~ 620 (760)
|++++.+ .|....++..+|.+|...|++++|+.+|++++.. +|....++..+|.++...|++++
T Consensus 66 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 145 (283)
T 3edt_B 66 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145 (283)
T ss_dssp HHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 9999887 3555678899999999999999999999999987 46667889999999999999999
Q ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHc
Q 004340 621 SEHHFRMAFQI--------SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA---------DKKNPLPMYQKANILLSL 683 (760)
Q Consensus 621 A~~~l~~al~~--------~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~---------~p~~~~~~~~la~~~~~~ 683 (760)
|+.++++++++ .|....++..+|.++...|++++|+.+++++++. .+.....+..++..+...
T Consensus 146 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (283)
T 3edt_B 146 VEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK 225 (283)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC
Confidence 99999999988 6666778999999999999999999999999986 444556777777777665
Q ss_pred CCH------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004340 684 EKF------DEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLK 734 (760)
Q Consensus 684 g~~------~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 734 (760)
+.+ .++...++.+....|....++..+|.+|...|++++|+.+|++++++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 226 DKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 543 333333333333345557789999999999999999999999998764
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.76 E-value=1.3e-18 Score=163.89 Aligned_cols=145 Identities=13% Similarity=0.182 Sum_probs=75.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 004340 574 CGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSG 653 (760)
Q Consensus 574 la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (760)
||.++...|++++|+..+++++..+|..+.+++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHcC
Q 004340 654 EAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEV-LEELKEYAPRESGVYALMGKIYKRRN 718 (760)
Q Consensus 654 eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~-l~~al~~~p~~~~~~~~la~~~~~~g 718 (760)
+|+..|+++++++|+++.+++.+|.+|...|++++|.+. ++++++++|+++.++..++.++...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 555555555555555555555555555555555444333 35555555555555555555554444
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.76 E-value=2e-18 Score=162.71 Aligned_cols=146 Identities=12% Similarity=0.142 Sum_probs=127.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004340 540 MGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFE 619 (760)
Q Consensus 540 la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 619 (760)
||.++...|++++|+..+++++..+|+.+.+++.+|.+|...|++++|+.+|+++++++|+++.+|+.+|.+|...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 67788888899999999999998888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCChHHHHHHHHHHHHcCC
Q 004340 620 FSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEM-MEKAILADKKNPLPMYQKANILLSLEK 685 (760)
Q Consensus 620 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~-l~~al~~~p~~~~~~~~la~~~~~~g~ 685 (760)
+|+.+|+++++++|+++.++..+|.++...|++++|.+. ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999998876665 588999999999999888888887775
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.76 E-value=2.2e-17 Score=164.52 Aligned_cols=185 Identities=9% Similarity=0.037 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 499 SLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEY 578 (760)
Q Consensus 499 ~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~ 578 (760)
..+.+...|..+...|++.+|...++++++.+|.++.+|+..+. ..... ..+.....+|.+|
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~~~-------------~~~~~~~~lg~~~ 64 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKNSE-------------ISSKLATELALAY 64 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTTSH-------------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cchhh-------------hhHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999988221 00000 0012233455555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHH
Q 004340 579 VALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR--SGEAI 656 (760)
Q Consensus 579 ~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~--~~eAl 656 (760)
...|++++|+..|+++++++|++..+++.+|.++...|++++|+.+|+++++++|+++.+++.+|.+++..|+ .+.+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555555544432 23334
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 657 EMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 657 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
..+.+++...| ...+++.+|.++...|++++|+..|++++++.|+
T Consensus 145 ~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 145 TDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 44444432111 1123455555555556666666666666666554
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.76 E-value=8.3e-18 Score=176.89 Aligned_cols=226 Identities=11% Similarity=0.085 Sum_probs=172.2
Q ss_pred ChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004340 447 RCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQEL 526 (760)
Q Consensus 447 ~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~ 526 (760)
++++|+..|.++ |.+|...|+|++|+..|.+++++.+.. ++.
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~---------- 73 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKA--------------GNE---------- 73 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHT--------------TCH----------
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHh--------------CCH----------
Confidence 467777776653 777777888888888887777653211 110
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC
Q 004340 527 ITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVAL-EDFENGIRSYQSALRVDA 599 (760)
Q Consensus 527 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~------~~a~~~la~~~~~~-g~~e~A~~~~~~al~~~p 599 (760)
+..+.+|..+|.+|...|++++|+.+|++++.+.+.. ..++..+|.+|... |++++|+.+|++++++.|
T Consensus 74 ----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 74 ----DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 0114678889999999999999999999999986643 45788999999996 999999999999999877
Q ss_pred CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004340 600 RH------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSV-------IMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (760)
Q Consensus 600 ~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-------~~~~la~~~~~~g~~~eAl~~l~~al~~~ 666 (760)
.. ..++..+|.++..+|++++|+.+|++++++.|.+.. ++..+|.++...|++++|+..|+++++++
T Consensus 150 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 54 467889999999999999999999999999887643 57889999999999999999999999999
Q ss_pred CCChHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 004340 667 KKNPLP-----MYQKANILL--SLEKFDEALEVLEELKEYAPRESGVYALMGKIY 714 (760)
Q Consensus 667 p~~~~~-----~~~la~~~~--~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~ 714 (760)
|..... +..++..+. ..+++++|+..|++++.++|....++..+-...
T Consensus 230 p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 876543 344555554 457899999999998888876655555544443
No 89
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.75 E-value=1.1e-15 Score=161.60 Aligned_cols=257 Identities=10% Similarity=0.008 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCChH-HHHHHHhcccccCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHH
Q 004340 424 TGASDLLGLLRILGEGYRMSCMYRCK-DALDVYLKLPHKHYNTGWVLSQVGKAYFEVVD----------YLEAERAFTLA 492 (760)
Q Consensus 424 ~~~~~l~~ll~~l~~a~~~~~~g~~~-eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~----------~~~A~~~~~~a 492 (760)
+....+................|.+. +|+.++..++..+|.+..+|...+.++...+. +++++.+++.+
T Consensus 21 ~~~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~ 100 (331)
T 3dss_A 21 EREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC 100 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 33444444555555555556677776 78888888888888888888888888877665 44555555555
Q ss_pred HHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHH
Q 004340 493 RRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQK--DHETALKNFQRAVQLNPRFAYG 570 (760)
Q Consensus 493 l~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~kal~~~p~~~~a 570 (760)
+..+| .+..+|...+.++...+ .+++++.++.++++.+|.+..+
T Consensus 101 L~~~P----------------------------------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~A 146 (331)
T 3dss_A 101 LRVNP----------------------------------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHC 146 (331)
T ss_dssp HHHCT----------------------------------TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhCC----------------------------------CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHH
Confidence 55555 45555555555555555 2556666666666666666666
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCC
Q 004340 571 HTLCGHEYVALED-FENGIRSYQSALRVDARHYNSWYGLGMVYLRQ--------------EKFEFSEHHFRMAFQISPHS 635 (760)
Q Consensus 571 ~~~la~~~~~~g~-~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~--------------g~~~~A~~~l~~al~~~p~~ 635 (760)
|...+.+....|. ++++++++.++++.+|.+..+|..++.++... +.++++++++.+++..+|++
T Consensus 147 W~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d 226 (331)
T 3dss_A 147 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 226 (331)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC
Confidence 6666666655555 45666666666666666666666666655554 34666666666666666666
Q ss_pred HHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCC
Q 004340 636 SVIMSYLGTAMHAL-----------KRSGEAIEMMEKAILADKKNPLPMYQKANILL---SLEKFDEALEVLEELKEYAP 701 (760)
Q Consensus 636 ~~~~~~la~~~~~~-----------g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~---~~g~~~eA~~~l~~al~~~p 701 (760)
..+|+.+..++... +.++++++.++++++..|++..++..++.+.. ..|..++...++.++++++|
T Consensus 227 ~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 227 QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 66666554444443 34677777777777777777555444443322 24677788888888888888
Q ss_pred CCHHHHHHHHHHH
Q 004340 702 RESGVYALMGKIY 714 (760)
Q Consensus 702 ~~~~~~~~la~~~ 714 (760)
.....|..++.-+
T Consensus 307 ~r~~~y~d~~~~~ 319 (331)
T 3dss_A 307 MRAAYLDDLRSKF 319 (331)
T ss_dssp GGHHHHHHHHHHH
T ss_pred chhhHHHHHHHHH
Confidence 7766666655443
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=4.3e-17 Score=164.34 Aligned_cols=190 Identities=13% Similarity=0.082 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA---YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYN---SWY 606 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~---~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~---a~~ 606 (760)
.+..++.+|..+...|++++|+..|++++...|... .+++.+|.+|...|++++|+..|+++++..|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345666777777777777777777777777666543 56677777777777777777777777777766543 566
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004340 607 GLGMVYLR------------------QEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668 (760)
Q Consensus 607 ~la~~~~~------------------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~ 668 (760)
.+|.++.. .|++++|+..|+++++.+|++..++..+..+....+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~----------------- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR----------------- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----------------
Confidence 66766665 4566666666666666666665443222111110000
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004340 669 NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES---GVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 669 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
.....+.+|.+|...|++++|+..|+++++..|+++ .+++.+|.+|.++|++++|+..++++....|++.+
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 011236789999999999999999999999999876 67999999999999999999999999999888754
No 91
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.74 E-value=1.3e-15 Score=161.09 Aligned_cols=241 Identities=12% Similarity=0.092 Sum_probs=197.6
Q ss_pred ccCHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004340 479 VVDYL-EAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNF 557 (760)
Q Consensus 479 ~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 557 (760)
.|++. +|+.++.+++..+|.+..+|...+.++..++.. .. +. .....+++++.++
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~------------~~---~~---------~~~~~l~~EL~~~ 97 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE------------KS---PE---------ESAALVKAELGFL 97 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH------------SC---HH---------HHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc------------cc---ch---------hhhHHHHHHHHHH
Confidence 44444 567777777777776666666665555443321 00 00 0011268999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC
Q 004340 558 QRAVQLNPRFAYGHTLCGHEYVALE--DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK-FEFSEHHFRMAFQISPH 634 (760)
Q Consensus 558 ~kal~~~p~~~~a~~~la~~~~~~g--~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~A~~~l~~al~~~p~ 634 (760)
..++..+|.+..+|...+.++...+ .+++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.
T Consensus 98 ~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 98 ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999 49999999999999999999999999999999999 69999999999999999
Q ss_pred CHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----------CCHHHH
Q 004340 635 SSVIMSYLGTAMHAL--------------KRSGEAIEMMEKAILADKKNPLPMYQKANILLSL-----------EKFDEA 689 (760)
Q Consensus 635 ~~~~~~~la~~~~~~--------------g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~-----------g~~~eA 689 (760)
+..+|..++.++... +.++++++++.+++..+|++..+|+.+..++... +.++++
T Consensus 178 N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~e 257 (331)
T 3dss_A 178 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSE 257 (331)
T ss_dssp CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 999999999999887 5689999999999999999999998777777665 468999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 004340 690 LEVLEELKEYAPRESGVYALMGKIYK---RRNMHEKAMLHFGLALDLKPSATDVATI 743 (760)
Q Consensus 690 ~~~l~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~l~p~~~~a~~~ 743 (760)
++.+++++++.|++..++..++.+.. ..|..++...++.+.+++||-....+.-
T Consensus 258 l~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d 314 (331)
T 3dss_A 258 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 314 (331)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHH
Confidence 99999999999999766655554433 3578899999999999999998766543
No 92
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=6.1e-16 Score=184.92 Aligned_cols=275 Identities=11% Similarity=0.022 Sum_probs=197.0
Q ss_pred HHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHH
Q 004340 439 GYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMK 518 (760)
Q Consensus 439 a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~ 518 (760)
|..+...|.|++|..+|+++.. . ...+...+...++|++|.++++++ ..+.+|..+|.++...|++.+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~----~---~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV----N---TSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC----H---HHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHH
Confidence 6666777888888888887631 1 111233334677777777777755 457777888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004340 519 LSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD 598 (760)
Q Consensus 519 a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~ 598 (760)
|+..|.++ +++..|..+|.++...|++++|+++|..+.+..++ +.+...+|.+|.+.+++++ ++.|. .
T Consensus 1124 AIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----N 1191 (1630)
T ss_pred HHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----h
Confidence 88777664 66777888888888888888888888887776633 2333357777777777774 44332 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 004340 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (760)
Q Consensus 599 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~ 678 (760)
..+...+..+|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.++++ .+..+|...+.
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCF 1258 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHH
Confidence 223456667888888888888888888875 36778888888888888888888877 45577888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC
Q 004340 679 ILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEKLHVPD 754 (760)
Q Consensus 679 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l~~~d 754 (760)
++...|+|..|..+... +.. +++.+..++..|...|.+++|+.+++.++.+++.+......+..+.....++
T Consensus 1259 acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 88888888888777664 332 3556668889999999999999999999999988887776666554444433
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.73 E-value=1.9e-17 Score=170.78 Aligned_cols=224 Identities=15% Similarity=0.109 Sum_probs=163.8
Q ss_pred HHHHHHHhcccc-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004340 449 KDALDVYLKLPH-KHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELI 527 (760)
Q Consensus 449 ~eAi~~l~~~~~-~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l 527 (760)
++|++.+.++.. ..|..+.++..+|.+|+..|++++|+.+|+++++.... ..
T Consensus 25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------------------~~ 77 (283)
T 3edt_B 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK---------------------------TL 77 (283)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------------------HT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH---------------------------Hc
Confidence 344444444443 33677889999999999999999999999999876300 00
Q ss_pred -HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 004340 528 -TTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL--------NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV- 597 (760)
Q Consensus 528 -~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~--------~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~- 597 (760)
...|..+.++..+|.++...|++++|+.+|++++.+ +|....++..+|.+|...|++++|+.+|++++++
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 011223567788888888888888888888888887 4566778888899999999999999999988887
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCC------hHHH
Q 004340 598 -------DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI---------SPHSSVIMSYLGTAMHALKR------SGEA 655 (760)
Q Consensus 598 -------~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~---------~p~~~~~~~~la~~~~~~g~------~~eA 655 (760)
.|....++..+|.++...|++++|+.+++++++. .+....++..++..+...+. +.++
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 6666778888999999999999999999888876 44555667777777666544 3444
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004340 656 IEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEY 699 (760)
Q Consensus 656 l~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 699 (760)
...++......|....++..+|.+|...|++++|+.+|++++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 238 GSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444344555678888999999999999999999988864
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.71 E-value=5.5e-16 Score=156.19 Aligned_cols=206 Identities=6% Similarity=-0.048 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHH
Q 004340 465 TGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSL---EGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQ---SWC 538 (760)
Q Consensus 465 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~---~~~ 538 (760)
++..++.+|..++..|+|++|+..|+++++..|.+. .++..+|.+++..|++.+|+..++++++.+|.++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 456788889999999999999999999998888653 46666666666666666666666666666666543 666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004340 539 AMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKF 618 (760)
Q Consensus 539 ~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 618 (760)
.+|.++...+.. ....+..++..+...|++++|+..|+++++..|++..++..+..+....+.
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence 777766654321 111233445555567889999999999999888876554332221111100
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 619 EFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP---LPMYQKANILLSLEKFDEALEVLEE 695 (760)
Q Consensus 619 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~l~~ 695 (760)
.......+|.++...|++++|+..|+++++..|+++ .+++.+|.++..+|++++|++.+++
T Consensus 146 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 146 ----------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 011235678888888888888888888888888775 5688888888888888888888888
Q ss_pred HHHHCCCC
Q 004340 696 LKEYAPRE 703 (760)
Q Consensus 696 al~~~p~~ 703 (760)
+....|++
T Consensus 210 l~~~~~~~ 217 (225)
T 2yhc_A 210 IAANSSNT 217 (225)
T ss_dssp HHHCCSCC
T ss_pred HHhhCCCc
Confidence 87777754
No 95
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.70 E-value=1.5e-15 Score=161.24 Aligned_cols=228 Identities=9% Similarity=-0.009 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHH
Q 004340 518 KLSYLAQELITTDRLAPQSWCAMGNCYSLQK-DHETALKNFQRAVQLNPRFAYGHTLCGHEYVAL-E-DFENGIRSYQSA 594 (760)
Q Consensus 518 ~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~-g-~~e~A~~~~~~a 594 (760)
+|..+..+++..+|.+..+|...+.++...| .+++++.++.+++..+|++..+|...+.++... + ++++++.++.++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3444445555555555666666666666666 466777777777777777777777766666665 5 666777777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------hHHHHHHH
Q 004340 595 LRVDARHYNSWYGLGMVYLRQEKFE--------FSEHHFRMAFQISPHSSVIMSYLGTAMHALKR-------SGEAIEMM 659 (760)
Q Consensus 595 l~~~p~~~~a~~~la~~~~~~g~~~--------~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~-------~~eAl~~l 659 (760)
++.+|.+..+|...+.++...|.++ +++++++++++.+|.+..+|...+.++...++ ++++++++
T Consensus 152 L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~ 231 (349)
T 3q7a_A 152 LLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYI 231 (349)
T ss_dssp TSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 7777777777777777766666665 77777777777777777777777777777665 57777777
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHC------CCCHHHHHHHHHH
Q 004340 660 EKAILADKKNPLPMYQKANILLSLEKF--------------------DEALEVLEELKEYA------PRESGVYALMGKI 713 (760)
Q Consensus 660 ~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~eA~~~l~~al~~~------p~~~~~~~~la~~ 713 (760)
++++..+|.+..+|+.+..++...|+. .+-.+....++... +..+.++..++.+
T Consensus 232 ~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 311 (349)
T 3q7a_A 232 LKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADS 311 (349)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHH
Confidence 777777777777777777777766653 12222222222222 3567888889999
Q ss_pred HHHcCCHHHHHHHHHHHH-hcCCChHHHHHHHH
Q 004340 714 YKRRNMHEKAMLHFGLAL-DLKPSATDVATIKA 745 (760)
Q Consensus 714 ~~~~g~~~~A~~~~~~al-~l~p~~~~a~~~l~ 745 (760)
|...|+.++|.+.|+... +.||-....+..+.
T Consensus 312 ~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 312 FIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 999999999999998886 67887776665444
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.70 E-value=9.3e-17 Score=155.22 Aligned_cols=163 Identities=11% Similarity=0.007 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Q 004340 569 YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH- 647 (760)
Q Consensus 569 ~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~- 647 (760)
..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++...| ++..+..++.+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666 5555444443322
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 004340 648 ALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE--SGVYALMGKIYKRRNMHEKAML 725 (760)
Q Consensus 648 ~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~ 725 (760)
..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..+|.++..+|+.++|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22333456777777777777777777777777777777777777777777777653 4577777777777777777777
Q ss_pred HHHHHHh
Q 004340 726 HFGLALD 732 (760)
Q Consensus 726 ~~~~al~ 732 (760)
.|++++.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.69 E-value=6.8e-16 Score=161.87 Aligned_cols=168 Identities=10% Similarity=0.015 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 565 PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGT 644 (760)
Q Consensus 565 p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 644 (760)
|.....+..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 55555555566666666666666666666666666666666666666666666666666666666666644444444555
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHH
Q 004340 645 AMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE--SGVYALMGKIYKRRNMHEK 722 (760)
Q Consensus 645 ~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~~ 722 (760)
.+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 55555566666666666666666666666666666666666666666666666666655 5566666666666666666
Q ss_pred HHHHHHHHHh
Q 004340 723 AMLHFGLALD 732 (760)
Q Consensus 723 A~~~~~~al~ 732 (760)
|...|++++.
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666553
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.68 E-value=5.1e-16 Score=141.49 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=57.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 004340 597 VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676 (760)
Q Consensus 597 ~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~l 676 (760)
++|+...++..+|..|++.|+|++|+..|+++++++|.++.++..+|.++..+|++++|+..|+++++++|.++.+++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 004340 677 ANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKI 713 (760)
Q Consensus 677 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~ 713 (760)
|.++..+|++++|++.|+++++++|++..++..++.+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 4444444444444444444444444444444444443
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.68 E-value=4.5e-16 Score=141.85 Aligned_cols=118 Identities=15% Similarity=0.221 Sum_probs=71.8
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004340 528 TTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYG 607 (760)
Q Consensus 528 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~ 607 (760)
.++|+.++.+..+|..|+..|++++|+.+|+++++++|.++.+|..+|.+|..+|++++|+..|+++++++|++..+|+.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 34555555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004340 608 LGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA 645 (760)
Q Consensus 608 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 645 (760)
+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666666666666666666666666666655555544
No 100
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.68 E-value=5.8e-15 Score=156.69 Aligned_cols=234 Identities=13% Similarity=0.105 Sum_probs=140.7
Q ss_pred CChHHHHHHHhcccccCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 004340 446 YRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVV-DYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQ 524 (760)
Q Consensus 446 g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~ 524 (760)
+..++|++++.+++..+|++..+|..++.++...| .+++++.++++++..+|.+..+|...+.++..+
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l----------- 136 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI----------- 136 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH-----------
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-----------
Confidence 34456777777777777777777777777776666 366666666666666666555555444444443
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHH
Q 004340 525 ELITTDRLAPQSWCAMGNCYSLQK-DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFE--------NGIRSYQSAL 595 (760)
Q Consensus 525 ~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e--------~A~~~~~~al 595 (760)
.+ ++++++.++.++++.+|.+..+|...+.+....|.++ ++++++.+++
T Consensus 137 ----------------------~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 137 ----------------------SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp ----------------------CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred ----------------------cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 04 4555556666666666666666655555555555554 6666666666
Q ss_pred HhCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------------
Q 004340 596 RVDARHYNSWYGLGMVYLRQEK-------FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRS---------------- 652 (760)
Q Consensus 596 ~~~p~~~~a~~~la~~~~~~g~-------~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~---------------- 652 (760)
+.+|.+..+|...+.++...+. ++++++++++++..+|.+..+|+.+..++...|+.
T Consensus 195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~ 274 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL 274 (349)
T ss_dssp HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccc
Confidence 6666666666666666666655 56666677777777777777666666666665543
Q ss_pred ----HHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCCHHHHHHHHH
Q 004340 653 ----GEAIEMMEKAILAD------KKNPLPMYQKANILLSLEKFDEALEVLEELK-EYAPRESGVYALMGK 712 (760)
Q Consensus 653 ----~eAl~~l~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~l~~al-~~~p~~~~~~~~la~ 712 (760)
.+....+...+... +..+.++..++.+|...|+.++|++.++.+. +.+|-....|...+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 275 NPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 12222222222111 3456677777778877788888888887775 456655555554443
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.68 E-value=2.2e-16 Score=152.56 Aligned_cols=165 Identities=11% Similarity=-0.019 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~ 612 (760)
..+.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+| ++..+..++.+.
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 3456788888999999999999999999999999999999999999999999999999999999888 777666655443
Q ss_pred H-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHH
Q 004340 613 L-RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN--PLPMYQKANILLSLEKFDEA 689 (760)
Q Consensus 613 ~-~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~eA 689 (760)
. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|.. +.++..++.++..+|++++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2 33344467899999999999999999999999999999999999999999999875 56899999999999999999
Q ss_pred HHHHHHHHH
Q 004340 690 LEVLEELKE 698 (760)
Q Consensus 690 ~~~l~~al~ 698 (760)
+..|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.68 E-value=1.4e-15 Score=159.52 Aligned_cols=168 Identities=14% Similarity=0.050 Sum_probs=146.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 531 RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (760)
Q Consensus 531 p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~ 610 (760)
|.++..++.+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 66778888888888888999999999999998899888888889999999999999999999888888876666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHH
Q 004340 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN--PLPMYQKANILLSLEKFDE 688 (760)
Q Consensus 611 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~e 688 (760)
.+...++.++|+..|++++..+|++..+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 78888888888888999999999999999999999999999999999999999988887 7888889999999998888
Q ss_pred HHHHHHHHHH
Q 004340 689 ALEVLEELKE 698 (760)
Q Consensus 689 A~~~l~~al~ 698 (760)
|+..|++++.
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888765
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.67 E-value=1.4e-16 Score=150.07 Aligned_cols=127 Identities=13% Similarity=-0.002 Sum_probs=96.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 004340 622 EHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (760)
Q Consensus 622 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 701 (760)
-..+++++.++|++..+++.+|.++...|++++|+..|++++.++|.++.+|+.+|.+|..+|++++|+..|+++++++|
T Consensus 22 ~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 22 GATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp SCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 34556667777777777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004340 702 RESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIE 748 (760)
Q Consensus 702 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~ 748 (760)
+++.+++.+|.+|..+|++++|+.+|++++++.|+..........++
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~ll~ 148 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLD 148 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888877764444444443
No 104
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=2.9e-17 Score=178.17 Aligned_cols=283 Identities=13% Similarity=0.092 Sum_probs=146.8
Q ss_pred HHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Q 004340 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKED 516 (760)
Q Consensus 437 ~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~ 516 (760)
..|..++..|++++|++.|.++ .++..+..++.++...|+|++|+.+++.+++..++ +.....++.++..+|+.
T Consensus 37 ~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l 110 (449)
T 1b89_A 37 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRL 110 (449)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred HHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCH
Confidence 3444457888889999888764 34557788888888889999999988888875433 55666778888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~ 596 (760)
.++..+++. | +..+|..+|..+...|+|++|+.+|.++ ..|..+|.++..+|++++|++.|+++
T Consensus 111 ~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-- 174 (449)
T 1b89_A 111 AELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-- 174 (449)
T ss_dssp HHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred HHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc--
Confidence 887776642 3 3458899999999999999999999876 36788899999999999999999988
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 004340 597 VDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQK 676 (760)
Q Consensus 597 ~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~l 676 (760)
.++..|...+.++...|+++.|..+... +..+ +.-...++.+|.+.|++++|+.++++++.+++.+..++..+
T Consensus 175 ---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~---ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel 247 (449)
T 1b89_A 175 ---NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 247 (449)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred ---CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC---HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 4688888888899999999999776664 2233 34445678888899999999999999999988888888888
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 004340 677 ANILLSL--EKFDEALEVLEELKEYAP-----RESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEK 749 (760)
Q Consensus 677 a~~~~~~--g~~~eA~~~l~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~ 749 (760)
|.+|.+- ++..+.++.|...+.+.| .++..|..+..+|...++++.|+..+- +--|+.-+-...+..+-+
T Consensus 248 ~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~---~h~~~a~~~~~f~~~~~k 324 (449)
T 1b89_A 248 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NHPTDAWKEGQFKDIITK 324 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HSTTTTCCHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH---hCChhhhhhHHHHHHHhc
Confidence 8887654 467777777777666666 677788889999999999998887443 332332222344555544
Q ss_pred cC
Q 004340 750 LH 751 (760)
Q Consensus 750 l~ 751 (760)
..
T Consensus 325 v~ 326 (449)
T 1b89_A 325 VA 326 (449)
T ss_dssp CS
T ss_pred hh
Confidence 43
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=1.2e-15 Score=175.88 Aligned_cols=164 Identities=17% Similarity=0.149 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 548 KDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRM 627 (760)
Q Consensus 548 g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~ 627 (760)
|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCH
Q 004340 628 AFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSL---EKFDEALEVLEELKEYAPRES 704 (760)
Q Consensus 628 al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~eA~~~l~~al~~~p~~~ 704 (760)
+++.+|++..++..+|.++...|++++|++.|+++++.+|++..++..+|.++... |++++|++.++++++..|...
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence 66666666666666666666666666666666666666666666666666666666 666666666666666665554
Q ss_pred HHHHHHH
Q 004340 705 GVYALMG 711 (760)
Q Consensus 705 ~~~~~la 711 (760)
..+..++
T Consensus 163 ~~~~~l~ 169 (568)
T 2vsy_A 163 EPFAFLS 169 (568)
T ss_dssp CHHHHTT
T ss_pred ChHHHhC
Confidence 4444444
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=1.5e-15 Score=175.20 Aligned_cols=161 Identities=15% Similarity=0.131 Sum_probs=138.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004340 581 LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMME 660 (760)
Q Consensus 581 ~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~ 660 (760)
.|++++|+..|+++++.+|.+..+++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCh
Q 004340 661 KAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRR---NMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 661 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~l~p~~ 737 (760)
++++.+|+++.+++.+|.+|...|++++|++.|++++++.|++..++..+|.++..+ |++++|++.|+++++.+|+.
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999987
Q ss_pred HHHH
Q 004340 738 TDVA 741 (760)
Q Consensus 738 ~~a~ 741 (760)
...+
T Consensus 162 ~~~~ 165 (568)
T 2vsy_A 162 VEPF 165 (568)
T ss_dssp SCHH
T ss_pred cChH
Confidence 5443
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.66 E-value=1.8e-15 Score=160.15 Aligned_cols=220 Identities=11% Similarity=0.050 Sum_probs=161.2
Q ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004340 479 VVDYLEAERAFTLARRASPYSLEGMDIYSTVLYH-LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNF 557 (760)
Q Consensus 479 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 557 (760)
.|++++|..+++++.+..+.. ++. .+++.+|..++.++ |.+|...|++++|+.+|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 466777777777776655532 011 35566666555443 56777888888888888
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 558 QRAVQLNPRF------AYGHTLCGHEYVALEDFENGIRSYQSALRVDAR------HYNSWYGLGMVYLRQEKFEFSEHHF 625 (760)
Q Consensus 558 ~kal~~~p~~------~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~l 625 (760)
.+++.+.+.. ..++..+|.+|...|++++|+.+|++++++.+. ...++..+|.+|.. |++++|+.+|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 8888774422 456788888888888999999999888887432 14577888999888 9999999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCCHHHHHHHH
Q 004340 626 RMAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP------LPMYQKANILLSLEKFDEALEVL 693 (760)
Q Consensus 626 ~~al~~~p~~------~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~------~~~~~la~~~~~~g~~~eA~~~l 693 (760)
++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+... .++..+|.++..+|++++|+.+|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998886643 46788889999999999999999999998765442 36777888888899999999999
Q ss_pred HHHHHHCCCCH-----HHHHHHHHHHHHcCCHHHHHH
Q 004340 694 EELKEYAPRES-----GVYALMGKIYKRRNMHEKAML 725 (760)
Q Consensus 694 ~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~ 725 (760)
++++ +.|... ..+..++..+ ..|+.+.+..
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999 888542 2344555555 5677655444
No 108
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.65 E-value=2.9e-16 Score=170.43 Aligned_cols=279 Identities=12% Similarity=0.012 Sum_probs=135.9
Q ss_pred hcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 004340 444 CMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLA 523 (760)
Q Consensus 444 ~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~ 523 (760)
..|+.++|.+.++++ +.+.+|..+|.++.+.|++++|++.|.++ .+..++...+.++...|++++|+.++
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 456789999999988 23369999999999999999999999774 35567888888899999999999998
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 004340 524 QELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYN 603 (760)
Q Consensus 524 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~ 603 (760)
+.+.+..++ +.+...++.+|.+.|+++++.++++. | +..+|..+|..+...|.|++|..+|.++ .
T Consensus 85 ~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~ 149 (449)
T 1b89_A 85 QMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------S 149 (449)
T ss_dssp -------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------T
T ss_pred HHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------h
Confidence 888885444 77888999999999999999988853 4 3459999999999999999999999986 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 004340 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSL 683 (760)
Q Consensus 604 a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~ 683 (760)
.|..+|.++.++|++++|++.++++ .++..|..++.++...|+++.|..+... +.. ++.-...++.+|.+.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDR 220 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHC
Confidence 6889999999999999999999998 4789999999999999999999777765 223 444455788999999
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCC-----ChHHHHHHHH-HHHhcCCCCc
Q 004340 684 EKFDEALEVLEELKEYAPRESGVYALMGKIYKRR--NMHEKAMLHFGLALDLKP-----SATDVATIKA-AIEKLHVPDE 755 (760)
Q Consensus 684 g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~l~p-----~~~~a~~~l~-~l~~l~~~de 755 (760)
|++++|+.++++++.+++....++..+|.+|.+- ++..++++.|...+.+.| .....|.-+. .+..-+++|.
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999999999999999999999999998754 577788888877777766 4444444333 2334444444
Q ss_pred c
Q 004340 756 I 756 (760)
Q Consensus 756 a 756 (760)
|
T Consensus 301 A 301 (449)
T 1b89_A 301 A 301 (449)
T ss_dssp H
T ss_pred H
Confidence 3
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.65 E-value=2e-15 Score=159.89 Aligned_cols=201 Identities=12% Similarity=0.098 Sum_probs=169.8
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 513 LKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSL-QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSY 591 (760)
Q Consensus 513 l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~ 591 (760)
.|++.+|..+++++.+..+.. ++. .+++++|+.+|.++ |.+|...|++++|+.+|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 456778888888887765532 122 58899999998876 56788999999999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHH
Q 004340 592 QSALRVDARH------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH--S----SVIMSYLGTAMHALKRSGEAIEMM 659 (760)
Q Consensus 592 ~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~----~~~~~~la~~~~~~g~~~eAl~~l 659 (760)
.+++++.+.. ..++..+|.+|..+|++++|+.+|++++++.+. + ..++..+|.++.. |++++|+.+|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 9999985432 557899999999999999999999999988532 2 4578899999999 9999999999
Q ss_pred HHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 660 EKAILADKKN------PLPMYQKANILLSLEKFDEALEVLEELKEYAPRE------SGVYALMGKIYKRRNMHEKAMLHF 727 (760)
Q Consensus 660 ~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 727 (760)
++++++.+.. ..++..+|.+|..+|++++|+.+|++++.+.|.. ..++..+|.++..+|++++|+.+|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999987653 4678899999999999999999999999986543 347888999999999999999999
Q ss_pred HHHHhcCCChHH
Q 004340 728 GLALDLKPSATD 739 (760)
Q Consensus 728 ~~al~l~p~~~~ 739 (760)
++++ ++|....
T Consensus 219 ~~al-~~p~~~~ 229 (307)
T 2ifu_A 219 RESY-SIPGFSG 229 (307)
T ss_dssp HHHT-TSTTSTT
T ss_pred HHHh-CCCCCCC
Confidence 9999 9997653
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=2.1e-17 Score=177.55 Aligned_cols=185 Identities=16% Similarity=0.197 Sum_probs=152.2
Q ss_pred cCCHHHHHHHHHH----HHHhCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 547 QKDHETALKNFQR----AVQLNPRFAYGHTLCGHEYV------------ALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (760)
Q Consensus 547 ~g~~~~A~~~~~k----al~~~p~~~~a~~~la~~~~------------~~g~~e~A~~~~~~al~~~p~~~~a~~~la~ 610 (760)
.+.+++|+..+.+ ++.+.|.. +|..+|.... .++++++|+..|++++...|....++..+|.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 4456677777776 66667765 3444443332 4567778888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 004340 611 VYLRQEKFEFSEHHFRMAFQISPHS---------------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQ 675 (760)
Q Consensus 611 ~~~~~g~~~~A~~~l~~al~~~p~~---------------~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~ 675 (760)
++...|++++|+..|++++.+.|.+ ..++.++|.++...|++++|+..|+++++++|.++.+++.
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 8888888888888888888888887 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 004340 676 KANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKA-MLHFGLALDL 733 (760)
Q Consensus 676 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~l 733 (760)
+|.+|..+|++++|+..|++++++.|++..++..++.++..+|++++| ...|++++..
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888 5577777653
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.64 E-value=1e-14 Score=145.53 Aligned_cols=175 Identities=13% Similarity=0.054 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 004340 552 TALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE----KFEFSEHHFRM 627 (760)
Q Consensus 552 ~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g----~~~~A~~~l~~ 627 (760)
+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 455666666654 45666666676666667777777777766654 456666677776666 5 67777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCC--CChHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 004340 628 AFQISPHSSVIMSYLGTAMHA----LKRSGEAIEMMEKAILADK--KNPLPMYQKANILLS----LEKFDEALEVLEELK 697 (760)
Q Consensus 628 al~~~p~~~~~~~~la~~~~~----~g~~~eAl~~l~~al~~~p--~~~~~~~~la~~~~~----~g~~~eA~~~l~~al 697 (760)
+.+ +.++.+++.+|.+|.. .+++++|+.+|+++++..+ ..+.+++.+|.+|.. .+++++|+.+|++++
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 643 4566667777777666 6677777777777776665 236677777777776 667777777777777
Q ss_pred HHCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcC
Q 004340 698 EYAPRESGVYALMGKIYKRR-N-----MHEKAMLHFGLALDLK 734 (760)
Q Consensus 698 ~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~l~ 734 (760)
+. +.++.+++.||.+|..- | ++++|+.+|+++.+..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66 44566777777777653 2 6777777777777664
No 112
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.63 E-value=6e-16 Score=159.18 Aligned_cols=205 Identities=10% Similarity=0.013 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCH-------
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLC-------GHEYVALEDFENGIRSYQSALRVDARHY------- 602 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~l-------a~~~~~~g~~e~A~~~~~~al~~~p~~~------- 602 (760)
++..|.-+ ..+++..|.+.|.+++.++|+..++|..+ +.++...+++.+++..+.+.+.+.|...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 44555555 68999999999999999999999999999 8999999999999999999999776543
Q ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004340 603 --------------NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668 (760)
Q Consensus 603 --------------~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~ 668 (760)
.++..++.++...|+|++|.+.|..++...|.+. ..+.+|.++++.++|++|+..|+++....+.
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~ 167 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK 167 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc
Confidence 3455688999999999999999999998899888 9999999999999999999999977664322
Q ss_pred C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 004340 669 N--PLPMYQKANILLSLEKFDEALEVLEELKEYA--PR-ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATI 743 (760)
Q Consensus 669 ~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~ 743 (760)
. ..+++.+|.++..+|++++|+.+|++++... |. ...+++.+|.++..+|+.++|...|++++..+|+ ..+...
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~a 246 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHH
Confidence 1 3589999999999999999999999998543 54 5679999999999999999999999999999999 655544
Q ss_pred H
Q 004340 744 K 744 (760)
Q Consensus 744 l 744 (760)
+
T Consensus 247 L 247 (282)
T 4f3v_A 247 L 247 (282)
T ss_dssp H
T ss_pred H
Confidence 4
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.63 E-value=1.3e-15 Score=143.29 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004340 587 GIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (760)
Q Consensus 587 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~ 666 (760)
+-..+++++.++|++..+++.+|.++...|++++|+.+|++++.++|.++.+|..+|.++...|++++|+..|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 44556677778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 004340 667 KKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (760)
Q Consensus 667 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 704 (760)
|+++.+++.+|.+|..+|++++|+..|++++++.|+.+
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888888888888888888654
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.62 E-value=1.4e-15 Score=158.89 Aligned_cols=198 Identities=14% Similarity=0.090 Sum_probs=165.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 531 RLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGM 610 (760)
Q Consensus 531 p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~ 610 (760)
|..+..++.+|..+...|++++|+.+|++++..+|.+..++..+|.+|...|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 004340 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEAL 690 (760)
Q Consensus 611 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 690 (760)
+|...|++++|+..|+++++++|++...+...+.... +..++..+........+.++.+...++.++ .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 9999999999999999999998866332222222222 222333334444456777888877777765 68999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 004340 691 EVLEELKEYAPRESGVYALMGKIYKRR-NMHEKAMLHFGLALDL 733 (760)
Q Consensus 691 ~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l 733 (760)
+.++++++..|++......++.++... +.+++|.+.|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999888888888888776 7789999999988764
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.61 E-value=4.4e-14 Score=140.94 Aligned_cols=184 Identities=11% Similarity=-0.016 Sum_probs=153.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 004340 519 LSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE----DFENGIRSYQSA 594 (760)
Q Consensus 519 a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g----~~e~A~~~~~~a 594 (760)
|..+++++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 44555555554 67888999999999999999999999999875 578899999999988 7 899999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 004340 595 LRVDARHYNSWYGLGMVYLR----QEKFEFSEHHFRMAFQISP--HSSVIMSYLGTAMHA----LKRSGEAIEMMEKAIL 664 (760)
Q Consensus 595 l~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~----~g~~~eAl~~l~~al~ 664 (760)
.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+ ..+.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 65 4678999999999987 8899999999999998877 348899999999998 8899999999999998
Q ss_pred hCCCChHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004340 665 ADKKNPLPMYQKANILLSL-E-----KFDEALEVLEELKEYAPRESGVYALMGK 712 (760)
Q Consensus 665 ~~p~~~~~~~~la~~~~~~-g-----~~~eA~~~l~~al~~~p~~~~~~~~la~ 712 (760)
. +.++.+++.+|.+|... | ++++|+.+|+++.+... ..+...++.
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~ 208 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR 208 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 8 66788999999999764 3 89999999999988753 455555544
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.60 E-value=5.2e-14 Score=127.06 Aligned_cols=133 Identities=26% Similarity=0.451 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 004340 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSL 683 (760)
Q Consensus 604 a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~ 683 (760)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..+++.+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 684 EKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 684 g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
|++++|+.++++++...|.+..++..+|.++...|++++|..+|++++..+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 66666666666666666666666666666666666666666666666666654
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.59 E-value=4.4e-15 Score=139.30 Aligned_cols=118 Identities=11% Similarity=-0.006 Sum_probs=74.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 623 HHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 623 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
..|++++.++|.+...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004340 703 ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDV 740 (760)
Q Consensus 703 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 740 (760)
++.+++.+|.+|..+|++++|+.+|+++++++|+++..
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 66666666666666666666666666666666654443
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=1.3e-13 Score=124.48 Aligned_cols=132 Identities=32% Similarity=0.551 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004340 536 SWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ 615 (760)
Q Consensus 536 ~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 615 (760)
+|+.+|.++...|++++|+.++++++..+|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 34444455555555555555555555444444444444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004340 616 EKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (760)
Q Consensus 616 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p 667 (760)
|++++|+.++++++...|.+..++..+|.++...|++++|+.++++++..+|
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 4444444444444444444444444444444444444444444444444443
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.57 E-value=6.2e-15 Score=151.60 Aligned_cols=136 Identities=16% Similarity=0.057 Sum_probs=68.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcC
Q 004340 573 LCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS--SVIMSYLGTAMHALK 650 (760)
Q Consensus 573 ~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g 650 (760)
.++.++...|++++|.+.|..++...|++. +++.+|.++...++|++|+.+|+.+....+.. ..+++.+|.++..+|
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 344555555555555555555554455444 55555555555555555555555443321110 224555555555555
Q ss_pred ChHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 004340 651 RSGEAIEMMEKAILAD--KK-NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALM 710 (760)
Q Consensus 651 ~~~eAl~~l~~al~~~--p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 710 (760)
++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..++..|
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 5555555555554322 22 2345555555555555555555555555555555 4444443
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.57 E-value=5e-16 Score=166.83 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=118.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 004340 547 QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---------------YNSWYGLGMV 611 (760)
Q Consensus 547 ~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~---------------~~a~~~la~~ 611 (760)
.+++++|+..|++++..+|....++..+|.++...|++++|+..|++++++.|.+ ..+|..+|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666677777777777777777777777777777666 5788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH-H
Q 004340 612 YLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEA-L 690 (760)
Q Consensus 612 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA-~ 690 (760)
|..+|++++|+.+|+++++++|+++.+++.+|.++...|++++|+..|+++++++|.+..++..++.++..+|++++| .
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888888887 4
Q ss_pred HHHHHHHH
Q 004340 691 EVLEELKE 698 (760)
Q Consensus 691 ~~l~~al~ 698 (760)
..|++++.
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45666554
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.57 E-value=1.4e-14 Score=135.90 Aligned_cols=118 Identities=16% Similarity=0.147 Sum_probs=82.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004340 589 RSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK 668 (760)
Q Consensus 589 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~ 668 (760)
..|++++.++|.+..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34566666666666677777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Q 004340 669 NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGV 706 (760)
Q Consensus 669 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 706 (760)
++.+++.+|.+|..+|++++|+..|++++++.|+++..
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 77777777777777777777777777777766665543
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=9e-15 Score=167.65 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=158.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--
Q 004340 549 DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALED----------FENGIRSYQSALRVDARHYNSWYGLGMVYLRQE-- 616 (760)
Q Consensus 549 ~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~----------~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-- 616 (760)
..++|++.+.+++.++|++..+|...+.++...|+ +++|+.+++++++.+|.++.+|+..+.++...+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34577888888888888888888888888888887 888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc------------
Q 004340 617 KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK-RSGEAIEMMEKAILADKKNPLPMYQKANILLSL------------ 683 (760)
Q Consensus 617 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~------------ 683 (760)
++++|+++++++++.+|.+..+|...+.++...| .++++++++.++++.+|.+..+|..++.++..+
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 6688888888888888888888888888888888 888888888888888888888888888888775
Q ss_pred --CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHhcCCC
Q 004340 684 --EKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEK------------AMLHFGLALDLKPS 736 (760)
Q Consensus 684 --g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~l~p~ 736 (760)
+.+++|++++.+++.++|++..+|+.++.++...+++++ |+.+|.+++.++|.
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 567889999999999999999999999998888887666 55567777777665
No 123
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.56 E-value=1.8e-13 Score=142.52 Aligned_cols=249 Identities=10% Similarity=0.002 Sum_probs=157.1
Q ss_pred HHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH
Q 004340 440 YRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKL 519 (760)
Q Consensus 440 ~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a 519 (760)
...+-.|+|..++.-..++....+ ..+...+.++|..+|++.... ..+....++
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~--~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~---------------- 74 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTD--NTLLFYKAKTLLALGQYQSQD--------PTSKLGKVL---------------- 74 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCC--HHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHH----------------
T ss_pred HHHHHhhHHHHHHHHHHhcCccch--HHHHHHHHHHHHHcCCCccCC--------CCCHHHHHH----------------
Confidence 344678899999987766544333 246667778888888876421 011111111
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004340 520 SYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDA 599 (760)
Q Consensus 520 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p 599 (760)
..++..+ . ++ |+..|++.+...+....++..+|.++...|++++|++++.+.+..+|
T Consensus 75 ------------------~~la~~~-~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~ 131 (310)
T 3mv2_B 75 ------------------DLYVQFL-D-TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE 131 (310)
T ss_dssp ------------------HHHHHHH-T-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC
T ss_pred ------------------HHHHHHh-c-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence 1222222 1 11 56666666665545555666777777777777777777777777665
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHcC--ChHHHHHHHHHHHHhCCC-
Q 004340 600 --RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH----SSVIMSYL--GTAMHALK--RSGEAIEMMEKAILADKK- 668 (760)
Q Consensus 600 --~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~~l--a~~~~~~g--~~~eAl~~l~~al~~~p~- 668 (760)
...+++..++.++..+|+.+.|.+.++++.+.+|+ +..++..+ |++....| ++.+|..+|+++.+..|+
T Consensus 132 ~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~ 211 (310)
T 3mv2_B 132 AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW 211 (310)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH
T ss_pred CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc
Confidence 66777777777777777777777777777777762 12222233 44455445 777777777777666665
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 669 -NPLPMYQKANILLSLEKFDEALEVLEELKEY----------APRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 669 -~~~~~~~la~~~~~~g~~~eA~~~l~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
....+++ ++..+|++++|.+.++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|++
T Consensus 212 ~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 212 KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 2223333 677777777777777766655 36677777777777777776 7777777777777777
Q ss_pred HHHHH
Q 004340 738 TDVAT 742 (760)
Q Consensus 738 ~~a~~ 742 (760)
+-+..
T Consensus 287 p~i~d 291 (310)
T 3mv2_B 287 AFIKH 291 (310)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 75433
No 124
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.55 E-value=1.1e-13 Score=144.00 Aligned_cols=194 Identities=9% Similarity=-0.032 Sum_probs=143.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQE 616 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 616 (760)
.+.+.++|..+|++.... ..+....+...++..+ . ++ |+..+++.+...+....++..+|.++...|
T Consensus 48 ~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~-~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g 114 (310)
T 3mv2_B 48 LFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFL-D-TK---NIEELENLLKDKQNSPYELYLLATAQAILG 114 (310)
T ss_dssp HHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHH-T-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHh-c-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 344556666666665321 1222223444444433 2 22 788899888776666777789999999999
Q ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcC--CH
Q 004340 617 KFEFSEHHFRMAFQISP--HSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK------NPLPMYQKANILLSLE--KF 686 (760)
Q Consensus 617 ~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~------~~~~~~~la~~~~~~g--~~ 686 (760)
++++|++++.+++..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+ .......-|++.+..| ++
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~ 194 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA 194 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTT
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccH
Confidence 99999999999998887 78899999999999999999999999999999883 3334444466677667 99
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCChHHHHHHH
Q 004340 687 DEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDL----------KPSATDVATIK 744 (760)
Q Consensus 687 ~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l----------~p~~~~a~~~l 744 (760)
.+|..+|+++.+..|+.......+. ++..+|++++|...++.+++. +|+++++...+
T Consensus 195 q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 195 TSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp THHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 9999999999887776222233333 899999999999999988876 48888876444
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.54 E-value=2.5e-14 Score=132.80 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=54.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004340 591 YQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (760)
Q Consensus 591 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~ 670 (760)
|++++..+|.+...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 004340 671 LPMYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (760)
Q Consensus 671 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 704 (760)
.+++.+|.+|..+|++++|+..|++++++.|+++
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 4444444444444444444444444444444443
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.54 E-value=2.1e-14 Score=133.34 Aligned_cols=123 Identities=13% Similarity=0.012 Sum_probs=113.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 623 HHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 623 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004340 703 ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 703 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
++.+++.+|.+|..+|++++|+.+|++++.++|+++....++.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 9999999999999999999999999999999998876555444
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.54 E-value=4.5e-14 Score=135.94 Aligned_cols=134 Identities=11% Similarity=0.094 Sum_probs=76.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCH--HHHH
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI-LLSLEKF--DEAL 690 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~-~~~~g~~--~eA~ 690 (760)
..|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.+ +...|++ ++|+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 345555555555555555555555555566666666666666666666666655555555566655 5555665 6666
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004340 691 EVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAI 747 (760)
Q Consensus 691 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l 747 (760)
..|+++++..|++..+++.+|.+|...|++++|+.+|+++++++|++.....+...+
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 666666666666666666666666666666666666666666666555444444433
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=1.8e-13 Score=156.75 Aligned_cols=170 Identities=11% Similarity=0.107 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHH
Q 004340 519 LSYLAQELITTDRLAPQSWCAMGNCYSLQKD----------HETALKNFQRAVQLNPRFAYGHTLCGHEYVALE--DFEN 586 (760)
Q Consensus 519 a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g--~~e~ 586 (760)
|..++.+++..+|++..+|+..+.++...|+ +++|+++++++++.+|++..+|...+.++...+ ++++
T Consensus 48 al~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~ 127 (567)
T 1dce_A 48 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR 127 (567)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHH
Confidence 3344444444444555555555555555555 788888888888888888888888888888888 6688
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------CC
Q 004340 587 GIRSYQSALRVDARHYNSWYGLGMVYLRQE-KFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL--------------KR 651 (760)
Q Consensus 587 A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~--------------g~ 651 (760)
|++++.++++.+|.+..+|...+.++...| .++++++++.++++.+|.+..+|...+.++... +.
T Consensus 128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~ 207 (567)
T 1dce_A 128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV 207 (567)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHH
Confidence 888888888888888888888888888888 888888888888888888888888888888774 56
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 004340 652 SGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDE 688 (760)
Q Consensus 652 ~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e 688 (760)
+++|++++.+++..+|++..+|+.++.++...+++++
T Consensus 208 ~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 208 LLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 7999999999999999999999999999999988666
No 129
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.53 E-value=9e-12 Score=144.79 Aligned_cols=183 Identities=12% Similarity=-0.014 Sum_probs=128.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 004340 554 LKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGI-RSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI- 631 (760)
Q Consensus 554 ~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~-~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~- 631 (760)
...|++++...|.++..|+..+..+...|+.++|. ..|++++...|.....|..++......|++++|...|++++..
T Consensus 329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777775 7777777777777777777777777777777777777777654
Q ss_pred ----------CCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCC-HHH
Q 004340 632 ----------SPH-----------SSVIMSYLGTAMHALKRSGEAIEMMEKAILA-DKKNPLPMYQKANILLSLEK-FDE 688 (760)
Q Consensus 632 ----------~p~-----------~~~~~~~la~~~~~~g~~~eAl~~l~~al~~-~p~~~~~~~~la~~~~~~g~-~~e 688 (760)
.|. ...+|..++.+..+.|..+.|..+|.+|++. .+....+|...|.+....++ ++.
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence 132 2345666666666777777777777777766 33445566666666655543 777
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004340 689 ALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPS 736 (760)
Q Consensus 689 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 736 (760)
|..+|+.+++..|+++..+...+......|+.+.|...|++++...|+
T Consensus 489 Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 489 ACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 788888887777777777777777777778888888888888777763
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.52 E-value=3.6e-14 Score=148.25 Aligned_cols=197 Identities=17% Similarity=0.177 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004340 463 YNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGN 542 (760)
Q Consensus 463 p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~ 542 (760)
|..+..+..+|..++..|+|++|+..|+++++.+|.+..+ |+.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------------------~~~la~ 46 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY----------------------------------YTNRAL 46 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH----------------------------------HHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH----------------------------------HHHHHH
Confidence 4566778888888888888888888888888877766544 455555
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004340 543 CYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSE 622 (760)
Q Consensus 543 ~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 622 (760)
+|...|++++|+..|+++++++|++..+++.+|.+|...|++++|+..|+++++++|++...+...+.... ...++.
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~ 123 (281)
T 2c2l_A 47 CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKK 123 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555433211111111111 111122
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 004340 623 HHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSL-EKFDEALEVLEELKE 698 (760)
Q Consensus 623 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~ 698 (760)
..........+.+..+...++.++ .|++++|++.++++++.+|.+......++.++... +.+++|.+.|.++.+
T Consensus 124 ~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 124 RWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 222222234444555544444433 45566666666666666665555555555554444 445556666655543
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.52 E-value=4.2e-13 Score=140.72 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=110.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 004340 571 HTLCGHEYVALEDFENGIRSYQSALRVDARHY------NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVI 638 (760)
Q Consensus 571 ~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~------~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~ 638 (760)
+...+..+...|++++|+..+.++++..+... ..++.+|.++...|++++|+.++++++...+.. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34445555555666666666665555544332 234556666777777777777777777654332 446
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH---HhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHH
Q 004340 639 MSYLGTAMHALKRSGEAIEMMEKAI---LADKKNP----LPMYQKANILLSLEKFDEALEVLEELKEYAPR------ESG 705 (760)
Q Consensus 639 ~~~la~~~~~~g~~~eAl~~l~~al---~~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~------~~~ 705 (760)
+..+|.+|...|++++|+.+|++++ +..+.+. .+++++|.+|..+|+|++|+.++++++++.++ ...
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7777777777777777777777777 3344432 46777888888888888888888888776432 267
Q ss_pred HHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 004340 706 VYALMGKIYKRRNMHEKA-MLHFGLALDL 733 (760)
Q Consensus 706 ~~~~la~~~~~~g~~~~A-~~~~~~al~l 733 (760)
+++.+|.+|..+|++++| ..+|++++.+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788888888888888888 7778888764
No 132
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.51 E-value=2.7e-14 Score=140.50 Aligned_cols=158 Identities=16% Similarity=0.108 Sum_probs=100.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HH
Q 004340 575 GHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS----------------VI 638 (760)
Q Consensus 575 a~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~----------------~~ 638 (760)
+......|++++|.+.+.......+.....+..+|.+++..|++++|+.+|++++...|.++ .+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 34444555555555555544444444455566666666666666666666666666666554 67
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Q 004340 639 MSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN 718 (760)
Q Consensus 639 ~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 718 (760)
+..+|.++...|++++|+.+++++++++|.++.+++.+|.+|..+|++++|+..|++++++.|++..++..++.++..++
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888888888888888888888888888888888888888888888888888777
Q ss_pred CHHHHH-HHHHHHHh
Q 004340 719 MHEKAM-LHFGLALD 732 (760)
Q Consensus 719 ~~~~A~-~~~~~al~ 732 (760)
+..++. ..|..++.
T Consensus 171 ~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 171 EARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHC-----------
T ss_pred HHHHHHHHHHHHHhc
Confidence 777766 44444443
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.51 E-value=4.7e-13 Score=132.45 Aligned_cols=130 Identities=16% Similarity=0.196 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004340 570 GHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHAL 649 (760)
Q Consensus 570 a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 649 (760)
.++.+|.++...|++++|+..|++++ ++ +..+++.+|.+|...|++++|+.+|++++..+|.+..+++.+|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 45556666666666666666666663 22 4556666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHHhCCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 650 KRSGEAIEMMEKAILADKKNP----------------LPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 650 g~~~eAl~~l~~al~~~p~~~----------------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
|++++|+..|+++++..|.+. .+++.+|.++...|++++|+..|++++++.|+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 666666666666666555544 55555555555555555555555555555554
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.51 E-value=6.8e-13 Score=139.10 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA------YGHTLCGHEYVALEDFENGIRSYQSALRVDARH------ 601 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~------~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~------ 601 (760)
...+...+..+...|++++|++.+.++++..+... ..+..+|.++...|++++|+.+|++++...+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 45566788889999999999999999999877654 345678888999999999999999999865433
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAF---QISPHSS----VIMSYLGTAMHALKRSGEAIEMMEKAILADKK------ 668 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al---~~~p~~~----~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~------ 668 (760)
..++..+|.+|...|++++|+.+|++++ +..|++. .+++++|.++...|++++|+.++++++++.+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 5689999999999999999999999999 4466543 58899999999999999999999999987532
Q ss_pred ChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHH
Q 004340 669 NPLPMYQKANILLSLEKFDEA-LEVLEELKEY 699 (760)
Q Consensus 669 ~~~~~~~la~~~~~~g~~~eA-~~~l~~al~~ 699 (760)
...+++.+|.+|..+|++++| ..++++++.+
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 157889999999999999999 7889998864
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.51 E-value=6.7e-13 Score=125.23 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~ 681 (760)
...+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.++.+++.+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777778888877888888888888888877777777888888888
Q ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhc
Q 004340 682 SLEKFDEALEVLEELKEYAPRESGVYALMGKI--YKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 682 ~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~l 733 (760)
..|++++|+.+|++++++.|.+..++..++.+ +...|++++|+..+.++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888888887777776444444 67777888888777766543
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.50 E-value=6.5e-13 Score=131.46 Aligned_cols=133 Identities=16% Similarity=0.207 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~ 614 (760)
..++.+|..+...|++++|+..|++++ +| .+.++..+|.+|...|++++|+..|+++++.+|.+..+++.+|.+|..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 456788999999999999999999985 33 688999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004340 615 QEKFEFSEHHFRMAFQISPHSS----------------VIMSYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (760)
Q Consensus 615 ~g~~~~A~~~l~~al~~~p~~~----------------~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~ 670 (760)
.|++++|+.+|+++++..|.+. .+++.+|.++...|++++|+..|+++++..|.+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 9999999999999999888766 8999999999999999999999999999998764
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.50 E-value=8.4e-13 Score=124.56 Aligned_cols=131 Identities=19% Similarity=0.204 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~ 613 (760)
+..|+.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+.+|+++++.+|.+..+++.+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 35566677777777777777777777777777666667677777777777777777777777666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcCChHHHHHHHHHHHH
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGT--AMHALKRSGEAIEMMEKAIL 664 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~--~~~~~g~~~eAl~~l~~al~ 664 (760)
..|++++|+.+|+++++.+|.+..++..++. .+...|++++|+..+.++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666666666666666665533333 35556666666666665543
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.1e-13 Score=121.35 Aligned_cols=97 Identities=14% Similarity=0.058 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRR 717 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~ 717 (760)
.+..+|..++..|++++|+..|+++++.+|.++.+++.+|.++..+|++++|+..++++++++|+++.+++.+|.++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHhcC
Q 004340 718 NMHEKAMLHFGLALDLK 734 (760)
Q Consensus 718 g~~~~A~~~~~~al~l~ 734 (760)
|++++|+.+|+++++++
T Consensus 86 ~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 86 KEYASALETLDAARTKD 102 (126)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhC
Confidence 44444444444444444
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.9e-13 Score=121.51 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~ 613 (760)
+..|+.+|..+...|++++|+.+|++++.++|.++.+|..+|.++...|++++|+..|+++++++|++..+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45566666666667777777777777766666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Q 004340 614 RQEKFEFSEHHFRMAFQIS------PHSSVIMSYLGTAMH 647 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~------p~~~~~~~~la~~~~ 647 (760)
..|++++|+..|+++++++ |.+..++..++.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 6666666666666666666 666666655555543
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.49 E-value=1.6e-13 Score=131.96 Aligned_cols=123 Identities=18% Similarity=0.302 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCh--HHHHH
Q 004340 581 LEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA-MHALKRS--GEAIE 657 (760)
Q Consensus 581 ~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~-~~~~g~~--~eAl~ 657 (760)
.|++++|+..++++++.+|.+..+|+.+|.+|...|++++|+.+|+++++.+|.++.++..+|.+ +...|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555 4455554 55555
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 004340 658 MMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE 703 (760)
Q Consensus 658 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 703 (760)
+|+++++.+|.++.+++.+|.++...|++++|+..|+++++..|++
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 5555555555555555555555555555555555555555555544
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.48 E-value=5.6e-14 Score=138.16 Aligned_cols=149 Identities=14% Similarity=0.062 Sum_probs=93.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHH
Q 004340 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHY----------------NSW 605 (760)
Q Consensus 542 ~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~----------------~a~ 605 (760)
......|++++|.+.+.......+.....+..+|..+...|++++|+..|++++.+.|.+. .++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344444555555444444444444445555555555555556666666655555555444 677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 004340 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK 685 (760)
Q Consensus 606 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~ 685 (760)
..+|.++...|++++|+.+++++++.+|.+..+++.+|.++...|++++|+.+|+++++++|.+..++..++.++...++
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred HHHHH
Q 004340 686 FDEAL 690 (760)
Q Consensus 686 ~~eA~ 690 (760)
..++.
T Consensus 172 ~~~~~ 176 (198)
T 2fbn_A 172 ARKKD 176 (198)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 66655
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.47 E-value=6.8e-13 Score=120.02 Aligned_cols=119 Identities=12% Similarity=0.090 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 004340 600 RHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI 679 (760)
Q Consensus 600 ~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~ 679 (760)
....+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+++++++..|.++.+++.+|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Q 004340 680 LLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN 718 (760)
Q Consensus 680 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 718 (760)
+...|++++|+.+|+++++..|.+..++..++.++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666665554
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.47 E-value=7.7e-13 Score=118.86 Aligned_cols=122 Identities=19% Similarity=0.165 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 004340 599 ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKAN 678 (760)
Q Consensus 599 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~ 678 (760)
|.....+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|.++.+++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 33455666666666666666666666666666666666666666776666677777777777777666666666667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Q 004340 679 ILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMH 720 (760)
Q Consensus 679 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 720 (760)
++...|++++|+.+++++++..|++..++..+|.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777776666677777776666653
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.46 E-value=8.2e-13 Score=118.69 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~ 612 (760)
.+..++.+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+.++++++...|.+..+++.+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 004340 613 LRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRS 652 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 652 (760)
...|++++|+.+|+++++..|.+..++..+|.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 6666666666666666666666666666666666655553
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.46 E-value=8.3e-13 Score=138.43 Aligned_cols=160 Identities=11% Similarity=0.098 Sum_probs=104.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 004340 575 GHEYVALEDFENGIRSYQSALRVDARHYN------SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVIMSYL 642 (760)
Q Consensus 575 a~~~~~~g~~e~A~~~~~~al~~~p~~~~------a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~l 642 (760)
+..+...|++++|+..+++++...+.... .+..+|.++...+++++|+.+|++++...+.. ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33344445555555555554444333222 22345666666666666666666666643221 2356677
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhC---CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHH
Q 004340 643 GTAMHALKRSGEAIEMMEKAILAD---KK----NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE------SGVYAL 709 (760)
Q Consensus 643 a~~~~~~g~~~eAl~~l~~al~~~---p~----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~ 709 (760)
|.+|...|++++|+.+|+++++.. +. ...+++++|.+|..+|+|++|+.++++++++.+.. +.+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 777777777777777777777431 11 23567888888888888888888888888775432 678899
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcC
Q 004340 710 MGKIYKRRN-MHEKAMLHFGLALDLK 734 (760)
Q Consensus 710 la~~~~~~g-~~~~A~~~~~~al~l~ 734 (760)
+|.+|..+| ++++|+.+|++|+.+.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999999999 4699999999998754
No 146
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=2.5e-11 Score=141.04 Aligned_cols=229 Identities=10% Similarity=0.030 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 517 MKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETAL-KNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 517 ~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al 595 (760)
.....+|++++...|..+..|+..+..+...|+.++|+ ..|++|+...|.....|..++......|++++|..+|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred HhC-----------CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-
Q 004340 596 RVD-----------AR-----------HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI-SPHSSVIMSYLGTAMHALKR- 651 (760)
Q Consensus 596 ~~~-----------p~-----------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~la~~~~~~g~- 651 (760)
... |. ...+|...+.+..+.|..+.|...|.+|++. .+....+|...|.+..+.++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 752 42 3457888899888999999999999999987 44556778778888777764
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 652 SGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR---ESGVYALMGKIYKRRNMHEKAMLHFG 728 (760)
Q Consensus 652 ~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~ 728 (760)
++.|..+|+.+++..|+++..+...+......|+.+.|..+|++++...|+ ...+|..........|+.+.+...++
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998873 45788888888899999999999999
Q ss_pred HHHhcCCChHHHHHHHH
Q 004340 729 LALDLKPSATDVATIKA 745 (760)
Q Consensus 729 ~al~l~p~~~~a~~~l~ 745 (760)
++.+..|++..+.....
T Consensus 566 R~~~~~P~~~~~~~f~~ 582 (679)
T 4e6h_A 566 RFFEKFPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHSTTCCHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHH
Confidence 99999999876555443
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.45 E-value=9.2e-13 Score=119.13 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004340 532 LAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMV 611 (760)
Q Consensus 532 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~ 611 (760)
..+.+|+.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+.+|+++++.+|.+..+++.+|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 612 YLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK 650 (760)
Q Consensus 612 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 650 (760)
+...|++++|+.+|+++++.+|.+..++..++.++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555554443
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.44 E-value=1.5e-12 Score=136.37 Aligned_cols=162 Identities=12% Similarity=0.032 Sum_probs=132.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 004340 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAY------GHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSW 605 (760)
Q Consensus 538 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~------a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~------~~a~ 605 (760)
...+..+...|++++|+..+++++...+.... .+..+|.++...+++++|+.+|++++...+.. ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34567788889999999999999887766554 33458888888889999999999999864332 3478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hHH
Q 004340 606 YGLGMVYLRQEKFEFSEHHFRMAFQIS---PH----SSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PLP 672 (760)
Q Consensus 606 ~~la~~~~~~g~~~~A~~~l~~al~~~---p~----~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~------~~~ 672 (760)
..+|.+|...|++++|+.+|+++++.. +. ...+++++|.++...|++++|+.++++++++.+.. +.+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 999999999999999999999998531 12 24578899999999999999999999999876433 678
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 004340 673 MYQKANILLSLE-KFDEALEVLEELKEY 699 (760)
Q Consensus 673 ~~~la~~~~~~g-~~~eA~~~l~~al~~ 699 (760)
++.+|.+|..+| .+++|+++|++++.+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999999 579999999999875
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.44 E-value=1.2e-12 Score=124.38 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~ 681 (760)
...++.+|.++...|++++|+.+|+++++++|.++.+++.+|.++...|++++|+..|+++++++|.++.+++.+|.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHH
Q 004340 682 SLEKFDEALEVLEELKEYAPRESGVYA 708 (760)
Q Consensus 682 ~~g~~~eA~~~l~~al~~~p~~~~~~~ 708 (760)
.+|++++|+.+|++++++.|++..+++
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAM 117 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 555555555555555555554444333
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.44 E-value=1.5e-12 Score=123.73 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (760)
Q Consensus 568 ~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 647 (760)
+..+..+|.++...|++++|+.+|+++++++|.+..+|+.+|.+|...|++++|+.+|+++++++|++..+++.+|.++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 004340 648 ALKRSGEAIEMMEKAILADKKNPLPMYQKA 677 (760)
Q Consensus 648 ~~g~~~eAl~~l~~al~~~p~~~~~~~~la 677 (760)
..|++++|+.+|+++++++|++..+++.++
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 555555555555555555555555444333
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.43 E-value=6.4e-12 Score=111.73 Aligned_cols=117 Identities=24% Similarity=0.407 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~ 681 (760)
..+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Q 004340 682 SLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN 718 (760)
Q Consensus 682 ~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 718 (760)
..|++++|+.+++++++..|+++.++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 6666666666666666666666666666666665443
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.43 E-value=1.8e-12 Score=117.97 Aligned_cols=102 Identities=22% Similarity=0.189 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHHHHH
Q 004340 637 VIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE-------SGVYAL 709 (760)
Q Consensus 637 ~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-------~~~~~~ 709 (760)
.++..+|.++++.|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++++.|+. ..++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666666666666666666655433 246777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004340 710 MGKIYKRRNMHEKAMLHFGLALDLKPSAT 738 (760)
Q Consensus 710 la~~~~~~g~~~~A~~~~~~al~l~p~~~ 738 (760)
+|.++..+|++++|+++|++++...|+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 88888888888888888888888877643
No 153
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.42 E-value=1.5e-13 Score=153.83 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=89.9
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 004340 546 LQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH---------------YNSWYGLGM 610 (760)
Q Consensus 546 ~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~---------------~~a~~~la~ 610 (760)
..+++++|+..|++++...|....++..+|.+++..|++++|+..|+++++++|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888888878888888888888888888888888888888887776 345555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 004340 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEAL 690 (760)
Q Consensus 611 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 690 (760)
+|..+|++++|+.+|+++++++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..++++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555544443
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.42 E-value=9e-12 Score=110.74 Aligned_cols=115 Identities=28% Similarity=0.572 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~ 613 (760)
+..|+.+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44555555566666666666666666655555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA 648 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 648 (760)
..|++++|+.+++++++.+|.+..++..++.++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555443
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.40 E-value=3.3e-12 Score=116.72 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 530 DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLG 609 (760)
Q Consensus 530 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la 609 (760)
++.++..|+.+|.++...|++++|+.+|.+++..+|.+..++..+|.++...|++++|+..|+++++++|.+..+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 610 MVYLRQEKFEFSEHHFRMAFQISPH 634 (760)
Q Consensus 610 ~~~~~~g~~~~A~~~l~~al~~~p~ 634 (760)
.++...|++++|+.+|++++...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 6666666666666666666666555
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.40 E-value=3.6e-12 Score=116.45 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILL 681 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~ 681 (760)
...++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++++|.++.+++.+|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HcCCHHHHHHHHHHHHHHC
Q 004340 682 SLEKFDEALEVLEELKEYA 700 (760)
Q Consensus 682 ~~g~~~eA~~~l~~al~~~ 700 (760)
..|++++|+..|++++++.
T Consensus 89 ~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHC
Confidence 4444444444444444333
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.40 E-value=1.4e-12 Score=127.59 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCC---
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI------SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA---DKKN--- 669 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~---~p~~--- 669 (760)
..++..+|.++...|++++|+.++++++.+ .+....++..+|.++...|++++|+.++++++.+ .+++
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 444455555555555555555555555442 1222334555555555555555555555555554 2211
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 670 -PLPMYQKANILLSLEKFDEALEVLEELKEYAP--RE----SGVYALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 670 -~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
..++..+|.++...|++++|+.++++++.+.+ .+ ..++..+|.++...|++++|+.++++++++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 23455566666666666666666666654421 11 23356667777777777777777776666543
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.40 E-value=2.1e-13 Score=152.65 Aligned_cols=147 Identities=14% Similarity=0.112 Sum_probs=115.6
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 004340 512 HLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---------------AYGHTLCGH 576 (760)
Q Consensus 512 ~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~---------------~~a~~~la~ 576 (760)
.++++.+|...+...++..|..+..|..+|..++..|++++|+..|.+++.++|.+ ..+|.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777777888888888888888888888888888888877 578888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004340 577 EYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAI 656 (760)
Q Consensus 577 ~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl 656 (760)
+|..+|++++|+.+|+++++++|++..+|+.+|.+|..+|++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888877766
Q ss_pred HH
Q 004340 657 EM 658 (760)
Q Consensus 657 ~~ 658 (760)
+.
T Consensus 406 ~~ 407 (457)
T 1kt0_A 406 RR 407 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.39 E-value=6.5e-12 Score=114.20 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-------YNSWY 606 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~-------~~a~~ 606 (760)
+.++..+|..++..|++++|+.+|+++++++|+++.+|..+|.+|..+|++++|+..|+++++++|.. ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45667778888888888888888888888888888888888888888888888888888888776654 23566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 607 GLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (760)
Q Consensus 607 ~la~~~~~~g~~~~A~~~l~~al~~~p~ 634 (760)
.+|.++..+|++++|+.+|++++...|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6677777777777777777777766654
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.38 E-value=3.1e-12 Score=115.26 Aligned_cols=100 Identities=16% Similarity=0.052 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Q 004340 639 MSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRN 718 (760)
Q Consensus 639 ~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 718 (760)
++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCChH
Q 004340 719 MHEKAMLHFGLALDLKPSAT 738 (760)
Q Consensus 719 ~~~~A~~~~~~al~l~p~~~ 738 (760)
++++|+..|+++++++|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 77777777777777777654
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.37 E-value=1.6e-11 Score=108.08 Aligned_cols=112 Identities=11% Similarity=0.111 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~ 613 (760)
+..++.+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA 645 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 645 (760)
..|++++|+.+++++++.+|.++.++..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666666666555554
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.37 E-value=1.4e-11 Score=108.46 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=39.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Q 004340 641 YLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMH 720 (760)
Q Consensus 641 ~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 720 (760)
.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|+++.+++.+|.++...|++
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 88 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH
Confidence 33333333333333333333333333333333333333333334444444444444333333333344444444444444
Q ss_pred HHHHHHHHHHHhcCCChHH
Q 004340 721 EKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 721 ~~A~~~~~~al~l~p~~~~ 739 (760)
++|+.+|+++++++|++..
T Consensus 89 ~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 89 EEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp HHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHcCCCCHH
Confidence 4444444444444443333
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.37 E-value=6.3e-12 Score=122.92 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=113.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCH
Q 004340 545 SLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV------DARHYNSWYGLGMVYLRQEKF 618 (760)
Q Consensus 545 ~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~~ 618 (760)
+..|++++|.+.++......+....++..+|.++...|++++|+.++++++.+ .+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677777777554444322355677778888888888888888888888773 334456788888888888888
Q ss_pred HHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--C----hHHHHHHHHHHHHcCC
Q 004340 619 EFSEHHFRMAFQI---SPHS----SVIMSYLGTAMHALKRSGEAIEMMEKAILADKK--N----PLPMYQKANILLSLEK 685 (760)
Q Consensus 619 ~~A~~~l~~al~~---~p~~----~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~--~----~~~~~~la~~~~~~g~ 685 (760)
++|+.++++++.+ .+++ ..++..+|.++...|++++|+.++++++...+. + ..++..+|.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888888877 4433 446788888888888888888888888866322 2 2345788999999999
Q ss_pred HHHHHHHHHHHHHHC
Q 004340 686 FDEALEVLEELKEYA 700 (760)
Q Consensus 686 ~~eA~~~l~~al~~~ 700 (760)
+++|+.++++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.36 E-value=1.9e-12 Score=120.92 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------C-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Q 004340 639 MSYLGTAMHALKRSGEAIEMMEKAILADKK-------N-----PLPMYQKANILLSLEKFDEALEVLEELKEY------- 699 (760)
Q Consensus 639 ~~~la~~~~~~g~~~eAl~~l~~al~~~p~-------~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~------- 699 (760)
+...|..++..|+|++|+..|+++++++|+ + ..+|.++|.++..+|+|++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344444444444444444444444444444 2 226777777777777777777777777777
Q ss_pred CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004340 700 APRESGVY----ALMGKIYKRRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 700 ~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
+|++..+| +.+|.++..+|++++|+..|+++++++|++..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 88777777 88888888888888888888888887777654
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.36 E-value=4.7e-12 Score=119.98 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004340 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQI------------------SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAIL 664 (760)
Q Consensus 603 ~a~~~la~~~~~~g~~~~A~~~l~~al~~------------------~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~ 664 (760)
..+..+|..++..|+|++|+..|.+++.. +|....++.++|.++...|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34455555555555555555555555554 233333444444444444444444444444444
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 004340 665 ADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRES 704 (760)
Q Consensus 665 ~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 704 (760)
++|.++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 4444444444444444444444444444444444444443
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.36 E-value=5.1e-12 Score=113.83 Aligned_cols=101 Identities=13% Similarity=0.026 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004340 536 SWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQ 615 (760)
Q Consensus 536 ~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 615 (760)
.++.+|..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 004340 616 EKFEFSEHHFRMAFQISPHSS 636 (760)
Q Consensus 616 g~~~~A~~~l~~al~~~p~~~ 636 (760)
|++++|+..|+++++.+|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 777777777777776666543
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.35 E-value=4.9e-12 Score=119.87 Aligned_cols=115 Identities=12% Similarity=0.181 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQL------------------NPRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~------------------~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al 595 (760)
+..+..+|..++..|++++|+..|.+++.+ +|....+|..+|.+|...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467788899999999999999999999887 44445566666666666666666666666666
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 004340 596 RVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS-VIMSYLGTAMHA 648 (760)
Q Consensus 596 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-~~~~~la~~~~~ 648 (760)
+++|.+..+|+.+|.+|..+|++++|+..|++++.++|++. .+...++.+...
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666665 444444444433
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.35 E-value=2.1e-11 Score=110.01 Aligned_cols=114 Identities=9% Similarity=0.062 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHH
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKKNP---LPMYQKANILLSLEKFDEALEVLEELKEYAPRE---SGVYALMG 711 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la 711 (760)
.++.+|.++...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 356677777777777777777777777777776 677778888888888888888888888877777 77788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 004340 712 KIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEKLH 751 (760)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l~ 751 (760)
.++...|++++|+.+|++++...|++..+...+..+..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 8888888888888888888888887777666666665554
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.5e-11 Score=111.96 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004340 530 DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWY 606 (760)
Q Consensus 530 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~---~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~ 606 (760)
+|.....++.+|..+...|++++|+.+|++++..+|++ ..++..+|.+|...|++++|+.+|+++++.+|.+..+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34556667777777777777777777777777776665 566666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 607 GLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAM 646 (760)
Q Consensus 607 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 646 (760)
.+|.++...|++++|+.+|+++++.+|++..++..++.+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666666666666666666666666666666665555543
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.1e-11 Score=112.45 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004340 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGK 712 (760)
Q Consensus 636 ~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~ 712 (760)
...+..+|..+...|++++|+.+|+++++..|++ ..+++.+|.++...|++++|+..++++++..|+++.+++.+|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 3333333333333333333333333333333333 3334444444444444444444444444444444444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 004340 713 IYKRRNMHEKAMLHFGLALDLKPSATDVA 741 (760)
Q Consensus 713 ~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 741 (760)
++...|++++|+.+|++++.++|++..++
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 44444444444444444444444444333
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.33 E-value=4.4e-12 Score=118.48 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004340 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQI-------SPHSSVIM----SYLGTAMHALKRSGEAIEMMEKAILADKKNP 670 (760)
Q Consensus 604 a~~~la~~~~~~g~~~~A~~~l~~al~~-------~p~~~~~~----~~la~~~~~~g~~~eAl~~l~~al~~~p~~~ 670 (760)
+|.++|.++..+|+|++|+..|++++++ +|++..+| +++|.++..+|++++|+..|+++++++|++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 5555555555555555555555555555 55555555 5555555555555555555555555555443
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.32 E-value=5.8e-11 Score=130.96 Aligned_cols=203 Identities=10% Similarity=0.020 Sum_probs=125.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccccCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Q 004340 435 ILGEGYRMSCMYRCKDALDVYLKLPHKHYNTG-----------------WVLSQVGKAYFEVVDYLEAERAFTLARRASP 497 (760)
Q Consensus 435 ~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~-----------------~~l~~la~~~~~~g~~~~A~~~~~~al~~~p 497 (760)
.+.+|..+...|+|++|++.|.++++..+... .++..+|.+|...|+|++|++++.+++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999877666432 3578899999999999999999999887654
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHH
Q 004340 498 YSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLN------PRFAYGH 571 (760)
Q Consensus 498 ~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~------p~~~~a~ 571 (760)
........ ..+...++.++...|++++|+.++++++... +....++
T Consensus 87 ~~~~~~~~----------------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 87 QFAKSKTV----------------------------KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp TSCHHHHH----------------------------HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HccchHHH----------------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 42221100 1223345555555666666666666665531 1223455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHH
Q 004340 572 TLCGHEYVALEDFENGIRSYQSALRV------DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS---PHS----SVI 638 (760)
Q Consensus 572 ~~la~~~~~~g~~e~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~---p~~----~~~ 638 (760)
..+|.+|...|++++|+.++.+++.. .+....++..+|.+|...|++++|..++++++.+. +.. ..+
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 56666666666666666666666543 12224456666666666666666666666665542 111 234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004340 639 MSYLGTAMHALKRSGEAIEMMEKAILA 665 (760)
Q Consensus 639 ~~~la~~~~~~g~~~eAl~~l~~al~~ 665 (760)
+..+|.++...|++++|..+|.++++.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455566666666666666666666543
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.31 E-value=3.8e-11 Score=108.29 Aligned_cols=111 Identities=13% Similarity=0.133 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHH
Q 004340 605 WYGLGMVYLRQEKFEFSEHHFRMAFQISPHSS---VIMSYLGTAMHALKRSGEAIEMMEKAILADKKN---PLPMYQKAN 678 (760)
Q Consensus 605 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~---~~~~~~la~ 678 (760)
++.+|.++...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 45566666666666666666666666666655 566666666666666666666666666666666 555666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 679 ILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYK 715 (760)
Q Consensus 679 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~ 715 (760)
++...|++++|+..|++++...|+++.+...+..+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 6666666666666666666666666655554444443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.30 E-value=7.5e-13 Score=148.89 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 004340 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSL 683 (760)
Q Consensus 604 a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~ 683 (760)
++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++++|.++.+++.+|.+|..+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34555666667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 004340 684 EKFDEALEVLEELKEYAPRESGVYALMGKI--YKRRNMHEKAMLHFG 728 (760)
Q Consensus 684 g~~~eA~~~l~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~ 728 (760)
|++++|++.|++++++.|++..++..++.+ +...|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777777777776677777666 666677777777777
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.30 E-value=9.7e-12 Score=108.47 Aligned_cols=106 Identities=17% Similarity=0.133 Sum_probs=72.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHH
Q 004340 632 SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR--ESGVYAL 709 (760)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~--~~~~~~~ 709 (760)
+|++..++..+|.++...|++++|+.+|+++++..|.+..+++.+|.++...|++++|+.+++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 45555666666666666666666666666666666666666666666666667777777777777666666 6666777
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCCh
Q 004340 710 MGKIYKRR-NMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 710 la~~~~~~-g~~~~A~~~~~~al~l~p~~ 737 (760)
+|.++... |++++|++++++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 77777777 77777777777776666654
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.29 E-value=2.4e-12 Score=144.73 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~ 613 (760)
+..+..+|.++...|++++|+++|+++++++|.+..++..+|.+|...|++++|+..|+++++++|.+..+++.+|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCChHHHHHHHH-----------HHHHhCCCC
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTA--MHALKRSGEAIEMME-----------KAILADKKN 669 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~--~~~~g~~~eAl~~l~-----------~al~~~p~~ 669 (760)
.+|++++|+..|+++++++|++..++..++.+ +...|++++|++.++ +++.+.|..
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999998888888888 888899999999999 777766654
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.29 E-value=1.7e-11 Score=106.81 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 004340 530 DRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR--HYNSWYG 607 (760)
Q Consensus 530 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~--~~~a~~~ 607 (760)
+|.++.+|+.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 34555556666666666666666666666666666666666666666666666666666666666666666 5666666
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCC
Q 004340 608 LGMVYLRQ-EKFEFSEHHFRMAFQISPH 634 (760)
Q Consensus 608 la~~~~~~-g~~~~A~~~l~~al~~~p~ 634 (760)
+|.++... |++++|+.++++++...|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 66666666 6666666666666655554
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.29 E-value=2.3e-11 Score=109.17 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------hHHHHH
Q 004340 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN-------PLPMYQ 675 (760)
Q Consensus 603 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~-------~~~~~~ 675 (760)
..++.+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.++++++...|.+ ..+++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555555555555555444433 444444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 676 KANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYK 715 (760)
Q Consensus 676 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~ 715 (760)
+|.++...|++++|+.+|+++++..| ++.++..++.+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 55555555555555555555555444 3444444444433
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.29 E-value=3e-11 Score=108.40 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH-------YNSWY 606 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~-------~~a~~ 606 (760)
+..|+.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+.+|++++...|.+ ..+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777776655 66677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 607 GLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHA 648 (760)
Q Consensus 607 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 648 (760)
.+|.++...|++++|+.+|+++++..| +...+..++.+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 777777777777777777777777666 45555555555443
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.29 E-value=2.4e-12 Score=138.11 Aligned_cols=163 Identities=15% Similarity=0.232 Sum_probs=100.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004340 560 AVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIM 639 (760)
Q Consensus 560 al~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 639 (760)
.+...+.....+..+|..++..|++++|+..|++++...|.+.. +...++++++...+. ..++
T Consensus 171 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~ 233 (338)
T 2if4_A 171 TVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCH 233 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHH
Confidence 33444556778889999999999999999999999998886541 223444555544332 2378
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHcC
Q 004340 640 SYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIY-KRRN 718 (760)
Q Consensus 640 ~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~-~~~g 718 (760)
+++|.++...|++++|+.+|+++++++|.+..+++.+|.+|..+|++++|+..|++++++.|++..++..++.+. ...+
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999884 4567
Q ss_pred CHHHHHHHHHHHHhcCCChHH
Q 004340 719 MHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 719 ~~~~A~~~~~~al~l~p~~~~ 739 (760)
..+++...|.+++...|++..
T Consensus 314 ~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 314 LYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHhhCCCCCCCC
Confidence 788899999999999998764
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=5.7e-11 Score=131.03 Aligned_cols=200 Identities=8% Similarity=-0.026 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFA-----------------YGHTLCGHEYVALEDFENGIRSYQSALR 596 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~-----------------~a~~~la~~~~~~g~~e~A~~~~~~al~ 596 (760)
|.+....|..+...|++++|++.|.++++..+... .++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455667777888888888888888888766532 3577888899999999999999888887
Q ss_pred hCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004340 597 VDARHY------NSWYGLGMVYLRQEKFEFSEHHFRMAFQISP------HSSVIMSYLGTAMHALKRSGEAIEMMEKAIL 664 (760)
Q Consensus 597 ~~p~~~------~a~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~eAl~~l~~al~ 664 (760)
..+... .+...++.++...|++++|+.++++++...+ ....++..+|.++...|+|++|+.++++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 654322 2455677777788899999999988877532 2356788889999999999999999998887
Q ss_pred hC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 665 AD------KKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP---RE----SGVYALMGKIYKRRNMHEKAMLHFGLAL 731 (760)
Q Consensus 665 ~~------p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 731 (760)
.. +....++..++.+|...|++++|..++++++...+ .. ..++..+|.++...|++++|..+|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 52 22346788899999999999999999999887632 22 3567788888888999999999998887
Q ss_pred hc
Q 004340 732 DL 733 (760)
Q Consensus 732 ~l 733 (760)
..
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 182
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.29 E-value=4.9e-09 Score=118.04 Aligned_cols=289 Identities=8% Similarity=-0.091 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHH---CCCCHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVD-YLEAERAFTLARRA---SPYSLEGMDIYS 507 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~la 507 (760)
+...+..+...+-.++++.|..+|++++...| +..+|..........++ .+.....|+.++.. ++.....|..++
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34445555566666899999999999999888 66677777666666553 45567788888875 677778888877
Q ss_pred HHHH----HccCHHHHHHHHHHHHHhCCCCHH-HHHHHHH----------------------------------------
Q 004340 508 TVLY----HLKEDMKLSYLAQELITTDRLAPQ-SWCAMGN---------------------------------------- 542 (760)
Q Consensus 508 ~~l~----~l~~~~~a~~~~~~~l~~~p~~~~-~~~~la~---------------------------------------- 542 (760)
..+. ..++.+.+..++++++........ .|.....
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 6654 234566777888888774322221 1111100
Q ss_pred ------HHHhcCC---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004340 543 ------CYSLQKD---------HETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYG 607 (760)
Q Consensus 543 ------~~~~~g~---------~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~ 607 (760)
+-+..++ .+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.+...|..
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~ 251 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY 251 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 0011111 233456677777777777777777777777777777777777777777 666544443
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---C----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Q 004340 608 LGMVYLRQEKFEFSEHHFRMAFQI---S----------PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMY 674 (760)
Q Consensus 608 la~~~~~~g~~~~A~~~l~~al~~---~----------p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~ 674 (760)
.+... ..+ +. ++.+.+. . +....+|...+..+.+.+..+.|..+|+++ ...+.....|.
T Consensus 252 y~~~~-e~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i 323 (493)
T 2uy1_A 252 YGLVM-DEE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFI 323 (493)
T ss_dssp HHHHT-TCT---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHH
T ss_pred HHhhc-chh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHH
Confidence 33221 000 00 1111000 0 001123344444444455566666666666 22222334444
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 675 QKANILLSLE-KFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLA 730 (760)
Q Consensus 675 ~la~~~~~~g-~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 730 (760)
..|.+....+ +.+.|..+|+.+++..|+.+..+...+......|+.+.|...|+++
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444 3666666666666665655555555555555556666655555543
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.26 E-value=3.7e-12 Score=136.65 Aligned_cols=154 Identities=8% Similarity=0.067 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~ 613 (760)
+..+..+|..++..|++++|+.+|++++.+.|.+. .+...++++++...+. ..+|+++|.+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 56788999999999999999999999999988754 1233445555544332 236788888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCHHHHHHH
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANI-LLSLEKFDEALEV 692 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~-~~~~g~~~eA~~~ 692 (760)
.+|++++|+.+|+++++++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+ ....+..+++...
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888877 3445667778888
Q ss_pred HHHHHHHCCCCH
Q 004340 693 LEELKEYAPRES 704 (760)
Q Consensus 693 l~~al~~~p~~~ 704 (760)
|.+++...|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 888888777654
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.25 E-value=3.9e-11 Score=111.68 Aligned_cols=132 Identities=19% Similarity=0.196 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hH
Q 004340 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN------PL 671 (760)
Q Consensus 604 a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~------~~ 671 (760)
++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++...+.. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34444444444444444444444444432211 1244555555555555555555555555543221 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004340 672 PMYQKANILLSLEKFDEALEVLEELKEYAP------RESGVYALMGKIYKRRNMHEKAMLHFGLALDLKP 735 (760)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 735 (760)
++..+|.++...|++++|+.++++++++.+ ....++..+|.++...|++++|+.++++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 556666667777777777777766665522 1245667777777777777777777777776544
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.24 E-value=5.3e-11 Score=129.18 Aligned_cols=140 Identities=17% Similarity=0.243 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (760)
Q Consensus 568 ~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 647 (760)
...+..+|..+...|++++|+..|++++++.+... +....+......|....++.++|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999888533211 111123334455666677777777777
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004340 648 ALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAML 725 (760)
Q Consensus 648 ~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 725 (760)
.+|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|++++++.|++..++..++.++..+++++++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777766654
No 186
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.24 E-value=1.8e-09 Score=121.61 Aligned_cols=269 Identities=12% Similarity=-0.004 Sum_probs=169.9
Q ss_pred hHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHH
Q 004340 448 CKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKE-DMKLSYLAQEL 526 (760)
Q Consensus 448 ~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~-~~~a~~~~~~~ 526 (760)
+..|..+|++++...|. |+++.+..+|++++...| +.+.|..+.......+. .+.....|+.+
T Consensus 11 i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp -CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 66677777766555553 899999999999999888 78899999888887764 34456677777
Q ss_pred HHh---CCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHH----------------------
Q 004340 527 ITT---DRLAPQSWCAMGNCYS----LQKDHETALKNFQRAVQLNPRFAYGH-TLCGH---------------------- 576 (760)
Q Consensus 527 l~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~~~kal~~~p~~~~a~-~~la~---------------------- 576 (760)
+.. ++.+...|......+. ..++.+.+...|++|+..-.....-+ .....
T Consensus 75 l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~ 154 (493)
T 2uy1_A 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQ 154 (493)
T ss_dssp HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHH
Confidence 764 7888999998887765 34678899999999998533222111 10000
Q ss_pred ------------------------HHHHcCC---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004340 577 ------------------------EYVALED---------FENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEH 623 (760)
Q Consensus 577 ------------------------~~~~~g~---------~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 623 (760)
+-+..++ .+.+...|++++...|..+..|+..+..+...|+.++|..
T Consensus 155 ~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~ 234 (493)
T 2uy1_A 155 SSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 0001111 2234455555555555556666666665555666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------CCChHHHHHHHHHHHHcCCHHHHH
Q 004340 624 HFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD-------------KKNPLPMYQKANILLSLEKFDEAL 690 (760)
Q Consensus 624 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~-------------p~~~~~~~~la~~~~~~g~~~eA~ 690 (760)
.|++++.. |.+..++...+... +. ++. ++.+.+.. +....+|...+..+.+.+..+.|.
T Consensus 235 i~erAi~~-P~~~~l~~~y~~~~-e~---~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 235 VVERGIEM-SDGMFLSLYYGLVM-DE---EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHHH-CCSSHHHHHHHHHT-TC---THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHhhc-ch---hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666 55554444333321 00 111 11111100 001234555566666778899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCChHHHH
Q 004340 691 EVLEELKEYAPRESGVYALMGKIYKRRN-MHEKAMLHFGLALDLKPSATDVA 741 (760)
Q Consensus 691 ~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p~~~~a~ 741 (760)
.+|+++ ...+....+|...|.+....+ +.+.|...|+.+++..|+.++.+
T Consensus 307 ~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 307 KLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp HHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence 999999 433345677777787777666 69999999999999999887653
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.23 E-value=6.4e-11 Score=128.51 Aligned_cols=140 Identities=11% Similarity=0.150 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~ 613 (760)
+..|..+|..+...|++++|+..|++++++.+... +..........+|....+|..+|.+|.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999998533211 011123333445555666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALE 691 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 691 (760)
.+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666666544
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.21 E-value=3.9e-11 Score=111.83 Aligned_cols=108 Identities=18% Similarity=0.199 Sum_probs=60.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 614 RQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVL 693 (760)
Q Consensus 614 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 693 (760)
+.+.|++|+..++++++++|+++.+|+++|.++...++++.+...++ .+++|+..|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~------------------------~~~eAi~~l 69 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ------------------------MIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH------------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh------------------------HHHHHHHHH
Confidence 44566777777777777777777777777777777666541111110 133555555
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004340 694 EELKEYAPRESGVYALMGKIYKRR-----------NMHEKAMLHFGLALDLKPSATDVATIKA 745 (760)
Q Consensus 694 ~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~l~p~~~~a~~~l~ 745 (760)
+++++++|+...+|+.+|.+|..+ |++++|+.+|++|++++|++......+.
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 555555555555555555555444 3566666666666666666555444433
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.21 E-value=9.9e-11 Score=108.88 Aligned_cols=139 Identities=17% Similarity=0.248 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF------AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYG 607 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~------~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~ 607 (760)
..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++...+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---- 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence 3455666666666666666666666666543221 123444455555555555555555554443221100
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHH
Q 004340 608 LGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKK------NPLPMYQKANILL 681 (760)
Q Consensus 608 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~------~~~~~~~la~~~~ 681 (760)
.+....++..+|.++...|++++|+.+++++++..+. ...++..+|.++.
T Consensus 85 ------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 85 ------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 0000234455555555555555555555555544211 1244556666666
Q ss_pred HcCCHHHHHHHHHHHHHHC
Q 004340 682 SLEKFDEALEVLEELKEYA 700 (760)
Q Consensus 682 ~~g~~~eA~~~l~~al~~~ 700 (760)
..|++++|++++++++++.
T Consensus 141 ~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHTCHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHH
Confidence 6666666666666666553
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.20 E-value=4.7e-11 Score=111.29 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 547 QKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDF----------ENGIRSYQSALRVDARHYNSWYGLGMVYLRQE 616 (760)
Q Consensus 547 ~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~----------e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 616 (760)
.+.+++|++.++++++++|+++.+|..+|.++...+++ ++|+..|+++++++|+...+|+.+|.+|..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34566677777777777777777777777666666554 35666666666666666666666666655543
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.19 E-value=2.8e-11 Score=107.92 Aligned_cols=90 Identities=13% Similarity=0.230 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004340 582 EDFENGIRSYQSALRV---DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEM 658 (760)
Q Consensus 582 g~~e~A~~~~~~al~~---~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~ 658 (760)
|++++|+.+|+++++. +|.+..+++.+|.+|...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444444444444 2444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHhCCCChH
Q 004340 659 MEKAILADKKNPL 671 (760)
Q Consensus 659 l~~al~~~p~~~~ 671 (760)
|++++...|.++.
T Consensus 84 ~~~al~~~p~~~~ 96 (117)
T 3k9i_A 84 LLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHhCCCcHH
Confidence 4444444444443
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.18 E-value=3.2e-11 Score=107.55 Aligned_cols=103 Identities=12% Similarity=0.111 Sum_probs=84.7
Q ss_pred hcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004340 546 LQKDHETALKNFQRAVQL---NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSE 622 (760)
Q Consensus 546 ~~g~~~~A~~~~~kal~~---~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 622 (760)
..|++++|+.+|++++++ +|.+..++..+|.+|...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357888999999999998 58888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 623 HHFRMAFQISPHSSVIMSYLGTAMHA 648 (760)
Q Consensus 623 ~~l~~al~~~p~~~~~~~~la~~~~~ 648 (760)
..|++++...|+++.+......+...
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999888766444443333
No 193
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=99.03 E-value=2.5e-10 Score=105.58 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhhccchhHHHHHHhhhhcCCCch----------hhHHHHHHHhhcCCHHHHHHHhccC--------CCc-
Q 004340 4 ILTDCVQNSLRYFMYRNAIFLCERLCAEFPSEV----------NLQLLATCYLQNNQAYAAYNILKGT--------QMA- 64 (760)
Q Consensus 4 ~l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~----------~~~llA~~~~~~~~~~~a~~~l~~~--------~~~- 64 (760)
.|++.|...+++++|++|+++++.|++...++. .++++|..+|..|+|.+|...++.. +.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 378999999999999999999999999986433 4699999999999999998888651 111
Q ss_pred ---------------------chhHHHHHHHHhcCChhHHHHhhCCCCCCCccCcch---HHHHHHHHHHHHh
Q 004340 65 ---------------------LSRYLFAVACYQMDLLSEAEAALSPVNEPSAEIPNG---AAGHYLMGLIYRY 113 (760)
Q Consensus 65 ---------------------~~~yl~a~c~~~l~~~~ea~~~l~~~~~~~~~~p~~---a~~~~llg~i~~~ 113 (760)
.|+|..|+|+.+++++++|+.+|+. +|.. .-++.+||++|++
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~-------Ip~k~Rt~kvnm~LakLy~~ 167 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG-------IPSRQRTPKINMLLANLYKK 167 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT-------SCGGGCCHHHHHHHHHHCC-
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc-------CCchhcCHHHHHHHHHHhcC
Confidence 6999999999999999999999963 4443 4589999999964
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.98 E-value=1.5e-09 Score=95.97 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004340 654 EAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDL 733 (760)
Q Consensus 654 eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 733 (760)
+|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++++.|++..+++.+|.+|...|++++|+.+|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCC
Q 004340 734 KPS 736 (760)
Q Consensus 734 ~p~ 736 (760)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.95 E-value=6.2e-09 Score=91.97 Aligned_cols=81 Identities=11% Similarity=0.025 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 004340 621 SEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYA 700 (760)
Q Consensus 621 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 700 (760)
|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45555555555555555555555555555555555555555555555555555556666666666666666666555554
Q ss_pred C
Q 004340 701 P 701 (760)
Q Consensus 701 p 701 (760)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 4
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=5.5e-10 Score=97.47 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH------YNSWYG 607 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~------~~a~~~ 607 (760)
+..|+.+|.++...|++++|+..|++++.++|.++.++..+|.++...|++++|+..|+++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666666666665 555666
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 004340 608 LGMVYLRQEKFEFSEHHF 625 (760)
Q Consensus 608 la~~~~~~g~~~~A~~~l 625 (760)
+|.++...|++++|+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 666666655555554433
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=4.3e-10 Score=98.18 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHH
Q 004340 637 VIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRE------SGVYALM 710 (760)
Q Consensus 637 ~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~l 710 (760)
..+..+|.++...|++++|+..|+++++.+|.++.+++.+|.++..+|++++|+..+++++++.|++ ..+++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555555555554 4555555
Q ss_pred HHHHHHcCCHHHHHHH
Q 004340 711 GKIYKRRNMHEKAMLH 726 (760)
Q Consensus 711 a~~~~~~g~~~~A~~~ 726 (760)
|.++..+|++++|+..
T Consensus 85 ~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHhHhhhHhH
Confidence 5555555554444433
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.91 E-value=1.1e-08 Score=85.69 Aligned_cols=82 Identities=24% Similarity=0.302 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 004340 636 SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYK 715 (760)
Q Consensus 636 ~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~ 715 (760)
..++..+|.++...|++++|+.+|+++++..|.++.+++.+|.++...|++++|+.++++++++.|+++.++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred Hc
Q 004340 716 RR 717 (760)
Q Consensus 716 ~~ 717 (760)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.89 E-value=1.2e-08 Score=85.28 Aligned_cols=82 Identities=29% Similarity=0.509 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYL 613 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~ 613 (760)
+..|+.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+.+|+++++++|.+..++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666665555
Q ss_pred Hc
Q 004340 614 RQ 615 (760)
Q Consensus 614 ~~ 615 (760)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.81 E-value=1.1e-08 Score=88.23 Aligned_cols=72 Identities=26% Similarity=0.466 Sum_probs=40.3
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004340 666 DKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 666 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
+|+++.+++.+|.+|...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++++.|..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 355555555555555555555555555555555555555555555555555555555555555555554433
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.79 E-value=9.7e-08 Score=87.75 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 004340 549 DHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR----QEKFEFSEHH 624 (760)
Q Consensus 549 ~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~ 624 (760)
++++|+.+|+++.+..... +. +|.+|...+.+++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 3455555555555443222 22 555555555555555555555543 344555555555554 4555555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHh
Q 004340 625 FRMAFQISPHSSVIMSYLGTAMHA----LKRSGEAIEMMEKAILA 665 (760)
Q Consensus 625 l~~al~~~p~~~~~~~~la~~~~~----~g~~~eAl~~l~~al~~ 665 (760)
|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555443 344445555555554 44555555555555444
No 202
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=98.79 E-value=5.3e-08 Score=88.51 Aligned_cols=138 Identities=22% Similarity=0.239 Sum_probs=111.2
Q ss_pred ChhHHHHHHHHHHhhccchhHHHHHHhhhhcCCCchhhHHHHHHHhhcCCHHHHHHHhccCCCcchhHHHHHHHHhcCCh
Q 004340 1 MEGILTDCVQNSLRYFMYRNAIFLCERLCAEFPSEVNLQLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLL 80 (760)
Q Consensus 1 ~~~~l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~~~llA~~~~~~~~~~~a~~~l~~~~~~~~~yl~a~c~~~l~~~ 80 (760)
|...+..-|-.|+..-.|++|+||+-=|++-.| +=..|+.-.+|.+|.|.||.-+|.+..+.-..|--+.|+.++++|
T Consensus 1 m~~~~~~kI~Ks~kY~dYdt~~fLsa~L~~~~~--eY~lL~~I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~LCy~klKdY 78 (242)
T 3kae_A 1 MDSKLIGKICKSIRYRDYETAIFLAACLLPCKP--EYRMLMSIVLYLNGEYTRALFHLHKLNTCTSKYYESLCYKKKKDY 78 (242)
T ss_dssp --CTHHHHHHHHHHTTCHHHHHHHHHHHC------CTHHHHHHHHHHTTCHHHHHHHHHTCCBHHHHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHHHhhcccccHHHHHHHHHccCCh--HHHhhhhhhhhhcchHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 556677788899999999999999999887666 667889999999999999999999988888889999999999999
Q ss_pred hHHHHhhCCC-----C----------CCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCcchHHHHHH
Q 004340 81 SEAEAALSPV-----N----------EPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEEL 141 (760)
Q Consensus 81 ~ea~~~l~~~-----~----------~~~~~~p~~a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~~w~af~~L 141 (760)
..|+..|+.. + .+..+-.|.-.-+.++|+|+..+|++++|+.+|+++...+| +|.+-|.|
T Consensus 79 kkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~-lf~~vEnl 153 (242)
T 3kae_A 79 KKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF-LFSPVENL 153 (242)
T ss_dssp HHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc-ccchHHHH
Confidence 9998766532 1 11222356677899999999999999999999999999986 45554433
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.78 E-value=1e-07 Score=87.60 Aligned_cols=108 Identities=9% Similarity=0.034 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHH
Q 004340 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLS----LEKFDEALEVL 693 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l 693 (760)
+++|+.+|+++.+....... +|.+|...+..++|+++|+++.+. .++.+++.+|.+|.. .+++++|+.+|
T Consensus 11 ~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 11 LKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 44444444444444322221 444444444444444444444443 344444445555444 44555555555
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 004340 694 EELKEYAPRESGVYALMGKIYKR----RNMHEKAMLHFGLALDL 733 (760)
Q Consensus 694 ~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l 733 (760)
+++.+. .++.+++.||.+|.. .+++++|+.+|+++.+.
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 554443 334455555555554 45555555555555444
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.77 E-value=3.7e-08 Score=84.91 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 004340 632 SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAP 701 (760)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 701 (760)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4666666666666666666666666666666666666666666666666666666666666666666544
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.75 E-value=1.1e-08 Score=87.41 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=43.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Q 004340 641 YLGTAMHALKRSGEAIEMMEKAILADKKNPL-PMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNM 719 (760)
Q Consensus 641 ~la~~~~~~g~~~eAl~~l~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 719 (760)
..|.++...|++++|+..|+++++.+|.++. +++.+|.+|...|++++|+..|+++++++|++..++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3444455555555555555555555555554 55555555555555555555555555555554444322 33
Q ss_pred HHHHHHHHHHHHhcCCC
Q 004340 720 HEKAMLHFGLALDLKPS 736 (760)
Q Consensus 720 ~~~A~~~~~~al~l~p~ 736 (760)
+.+|+.+|+++...+|+
T Consensus 77 ~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHhccCcc
Confidence 44445555444444443
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.73 E-value=5.4e-07 Score=95.37 Aligned_cols=147 Identities=11% Similarity=0.050 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004340 465 TGWVLSQVGKAYFEVVD---YLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMG 541 (760)
Q Consensus 465 ~~~~l~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la 541 (760)
.++-++..|..++..++ +.+|+.+|+++++++|+...++..++.++..... ..+.......
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~-------------~~~~~~~~~~--- 258 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHS-------------QHPLDEKQLA--- 258 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-------------HSCCCHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc-------------cCCCchhhHH---
Confidence 45666777888877544 5789999999999999998888877776652110 0011100000
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004340 542 NCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS 621 (760)
Q Consensus 542 ~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 621 (760)
....|+.. ..++..+|..+.++..++..+...|++++|+..+++++.++|. ..+|..+|.++...|++++|
T Consensus 259 -------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA 329 (372)
T 3ly7_A 259 -------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREA 329 (372)
T ss_dssp -------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred -------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 00112221 1222445666666666666666666666666666666666643 55566666666666666666
Q ss_pred HHHHHHHHHhCCCCH
Q 004340 622 EHHFRMAFQISPHSS 636 (760)
Q Consensus 622 ~~~l~~al~~~p~~~ 636 (760)
++.|++|+.++|...
T Consensus 330 ~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 330 ADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHSCSHH
T ss_pred HHHHHHHHhcCCCcC
Confidence 666666666666554
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.73 E-value=3.4e-07 Score=92.92 Aligned_cols=83 Identities=16% Similarity=0.059 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH-cCCHHHH
Q 004340 619 EFSEHHFRMAFQISPH--SSVIMSYLGTAMHAL-----KRSGEAIEMMEKAILADKKN-PLPMYQKANILLS-LEKFDEA 689 (760)
Q Consensus 619 ~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~-----g~~~eAl~~l~~al~~~p~~-~~~~~~la~~~~~-~g~~~eA 689 (760)
..|...++++++++|+ +..+|..+|.+|... |+.++|.++|+++++++|+. ..+++.+|..+.. .|++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555555555555 344555555555553 55555555555555555543 5555555555544 2555555
Q ss_pred HHHHHHHHHHCC
Q 004340 690 LEVLEELKEYAP 701 (760)
Q Consensus 690 ~~~l~~al~~~p 701 (760)
..++++++...|
T Consensus 260 ~~~L~kAL~a~p 271 (301)
T 3u64_A 260 DEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHCCG
T ss_pred HHHHHHHHcCCC
Confidence 555555555444
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.72 E-value=2.7e-08 Score=84.99 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 004340 607 GLGMVYLRQEKFEFSEHHFRMAFQISPHSSV-IMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEK 685 (760)
Q Consensus 607 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~ 685 (760)
.+|.++...|++++|+..|+++++.+|.+.. +++.+|.++...|++++|+..|+++++++|++..++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3444555555555555555555555555555 55555555555555555555555555555555444422 33
Q ss_pred HHHHHHHHHHHHHHCC
Q 004340 686 FDEALEVLEELKEYAP 701 (760)
Q Consensus 686 ~~eA~~~l~~al~~~p 701 (760)
+.+|+..|++++...|
T Consensus 77 ~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHhccCc
Confidence 4444444444444433
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.71 E-value=6.1e-08 Score=108.42 Aligned_cols=125 Identities=9% Similarity=-0.022 Sum_probs=78.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HH
Q 004340 540 MGNCYSLQKDHETALKNFQRAVQL-----NPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRV-----DARH---YN 603 (760)
Q Consensus 540 la~~~~~~g~~~~A~~~~~kal~~-----~p~~---~~a~~~la~~~~~~g~~e~A~~~~~~al~~-----~p~~---~~ 603 (760)
.+..+..+|+|++|+.++++++++ .+++ ...+.++|.+|..+|+|++|+.++++++++ .+++ ..
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344566778888888888888775 3333 345666777777777777777777777654 3333 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004340 604 SWYGLGMVYLRQEKFEFSEHHFRMAFQI-----SPHSS---VIMSYLGTAMHALKRSGEAIEMMEKAIL 664 (760)
Q Consensus 604 a~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~~---~~~~~la~~~~~~g~~~eAl~~l~~al~ 664 (760)
.+.+||.+|..+|++++|+.+|++++++ .|+++ .+...++.++..++.+++|...|.++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777766654 33333 2344555555566666666666655543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.70 E-value=4.2e-07 Score=96.19 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=101.4
Q ss_pred HHHHHhCCCCHHHH--HHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004340 558 QRAVQLNPRFAYGH--TLCGHEYVALE---DFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS 632 (760)
Q Consensus 558 ~kal~~~p~~~~a~--~~la~~~~~~g---~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~ 632 (760)
+++....|.+..+| +..|..+...+ ++.+|+.+|+++++++|+...+|..++.+|... ....
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~ 250 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQH 250 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHS
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccC
Confidence 34555567765554 55666666554 457899999999999999999998888888621 0011
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004340 633 PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGK 712 (760)
Q Consensus 633 p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~ 712 (760)
+........+ ..|+.. ..++..+|.++.++..++.++...|++++|+..+++++.++|. ..+|..+|.
T Consensus 251 ~~~~~~~~~l----------~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~ 318 (372)
T 3ly7_A 251 PLDEKQLAAL----------NTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGK 318 (372)
T ss_dssp CCCHHHHHHH----------HHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred CCchhhHHHH----------HHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence 1111100000 122221 1233456777777777777777777777777777777777763 666677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004340 713 IYKRRNMHEKAMLHFGLALDLKPSATD 739 (760)
Q Consensus 713 ~~~~~g~~~~A~~~~~~al~l~p~~~~ 739 (760)
++...|++++|++.|++|+.++|....
T Consensus 319 ~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 319 VYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 777777777777777777777777764
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.70 E-value=5.8e-08 Score=108.60 Aligned_cols=94 Identities=9% Similarity=0.081 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCH-
Q 004340 639 MSYLGTAMHALKRSGEAIEMMEKAILA-----DKKNP---LPMYQKANILLSLEKFDEALEVLEELKEY-----APRES- 704 (760)
Q Consensus 639 ~~~la~~~~~~g~~~eAl~~l~~al~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~- 704 (760)
+.++|.+|..+|+|++|+.++++++++ .|+++ ..+.++|.+|..+|++++|+.+|++++++ .|+++
T Consensus 354 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~ 433 (490)
T 3n71_A 354 LSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPI 433 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 444444444444444444444444432 23332 23444555555555555555555555442 23332
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 705 --GVYALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 705 --~~~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
.....++.++..++.+++|...|.++.+
T Consensus 434 ~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 434 TKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666666665555543
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.63 E-value=6.4e-07 Score=90.98 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=93.0
Q ss_pred HhCCCCHHHHHHHHHHHHH---c--CC------hHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHc-----CCHHHHHH
Q 004340 630 QISPHSSVIMSYLGTAMHA---L--KR------SGEAIEMMEKAILADKK--NPLPMYQKANILLSL-----EKFDEALE 691 (760)
Q Consensus 630 ~~~p~~~~~~~~la~~~~~---~--g~------~~eAl~~l~~al~~~p~--~~~~~~~la~~~~~~-----g~~~eA~~ 691 (760)
+.+|++++.++..|.+... . |. ..+|...++++++++|+ +..+|..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3467888877777666543 1 32 47899999999999999 677999999999995 99999999
Q ss_pred HHHHHHHHCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCh
Q 004340 692 VLEELKEYAPRE-SGVYALMGKIYKR-RNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 692 ~l~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~l~p~~ 737 (760)
+|++++++.|+. ..+++.+|..+.. .|++++|..++++++..+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 9999999999988 599999999999999988773
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=3.4e-07 Score=84.24 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 004340 652 SGEAIEMMEKAILADKKNPLPMYQKANILLSLE---KFDEALEVLEELKEYA-P-RESGVYALMGKIYKRRNMHEKAMLH 726 (760)
Q Consensus 652 ~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 726 (760)
...+.+.|.+.++.++.+..+.+.+|+++.+.+ +.++++..|+.+++.+ | +..+++|.+|..|+++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456677788888888888999999999999988 6679999999999988 6 5578999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHh
Q 004340 727 FGLALDLKPSATDVATIKAAIEK 749 (760)
Q Consensus 727 ~~~al~l~p~~~~a~~~l~~l~~ 749 (760)
++++++++|++..+..++..++.
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999988888776653
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.54 E-value=6.1e-07 Score=76.19 Aligned_cols=83 Identities=23% Similarity=0.205 Sum_probs=66.5
Q ss_pred CCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 004340 666 DKKNPLPMYQKANILLSLEK---FDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVAT 742 (760)
Q Consensus 666 ~p~~~~~~~~la~~~~~~g~---~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 742 (760)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+.+|+++++.+|.++....
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~ 81 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT 81 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 57788888888888876655 688888888888888888888888888888888888888888888888888665555
Q ss_pred HHHHHH
Q 004340 743 IKAAIE 748 (760)
Q Consensus 743 ~l~~l~ 748 (760)
+...|.
T Consensus 82 i~~~I~ 87 (93)
T 3bee_A 82 IIESIN 87 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 215
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.35 E-value=6.1e-05 Score=84.61 Aligned_cols=163 Identities=9% Similarity=0.027 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhC-CCCHHHH
Q 004340 537 WCAMGNCYSLQKDHETALKNFQRAVQLN-PRFAYGHTLCGHEYVALE---------DFENGIRSYQSALRVD-ARHYNSW 605 (760)
Q Consensus 537 ~~~la~~~~~~g~~~~A~~~~~kal~~~-p~~~~a~~~la~~~~~~g---------~~e~A~~~~~~al~~~-p~~~~a~ 605 (760)
+..+-..+.+.|+.++|+++|+++.+.. .-+...|..+-.++...+ ..++|.++|+++.... ..+...|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4445566667777777777777776642 224555665555555433 2566666666665542 1235566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHc
Q 004340 606 YGLGMVYLRQEKFEFSEHHFRMAFQIS-PHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADK-KNPLPMYQKANILLSL 683 (760)
Q Consensus 606 ~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p-~~~~~~~~la~~~~~~ 683 (760)
..+...|.+.|++++|..+|+++.+.. .-+...|..+...|.+.|+.++|.++|++..+..- -+...|..+..+|.+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 666666666677777776666665542 22455666666666666666666666666665431 2445566666666666
Q ss_pred CCHHHHHHHHHHHHHH
Q 004340 684 EKFDEALEVLEELKEY 699 (760)
Q Consensus 684 g~~~eA~~~l~~al~~ 699 (760)
|+.++|.++|+++.+.
T Consensus 189 g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 189 KNADKVYKTLQRLRDL 204 (501)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666553
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=6e-06 Score=75.94 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHHH
Q 004340 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALK---RSGEAIEMMEKAILAD-K-KNPLPMYQKANILLSLEKFDEALEV 692 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~eAl~~l~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~~~ 692 (760)
...+.+.|.+.++.++.+..+.+.+|+++.+.+ +.++++.+++..++.+ | ...+++|++|..++++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 345566666666666777777777777777766 5557777777777776 5 4567777777777777777777777
Q ss_pred HHHHHHHCCCCHHHHHHHHHH
Q 004340 693 LEELKEYAPRESGVYALMGKI 713 (760)
Q Consensus 693 l~~al~~~p~~~~~~~~la~~ 713 (760)
+++++++.|++..+....-.+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 777777777776665554443
No 217
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.29 E-value=0.00011 Score=82.42 Aligned_cols=158 Identities=9% Similarity=-0.024 Sum_probs=74.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 004340 507 STVLYHLKEDMKLSYLAQELITTD-RLAPQSWCAMGNCYSLQKD---------HETALKNFQRAVQLN-PRFAYGHTLCG 575 (760)
Q Consensus 507 a~~l~~l~~~~~a~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~kal~~~-p~~~~a~~~la 575 (760)
...+...|+.++|..+++++.+.. +-+..+|..+-.++...+. .++|.++|+++.... .-+...|..+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 334444555555555555554432 1233444444444433222 345555555544431 11344455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChH
Q 004340 576 HEYVALEDFENGIRSYQSALRVD-ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS-PHSSVIMSYLGTAMHALKRSG 653 (760)
Q Consensus 576 ~~~~~~g~~e~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~ 653 (760)
..|...|++++|..+|+++.+.. ..+...|..+...|.+.|+.++|.++|++..+.. .-+...|..+..++.+.|+.+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHH
Confidence 55555555555555555554431 1134445555555555555555555555554431 123444555555555555555
Q ss_pred HHHHHHHHHHH
Q 004340 654 EAIEMMEKAIL 664 (760)
Q Consensus 654 eAl~~l~~al~ 664 (760)
+|.+++++.-+
T Consensus 193 ~A~~ll~~Mr~ 203 (501)
T 4g26_A 193 KVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.27 E-value=4e-06 Score=71.03 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 530 DRLAPQSWCAMGNCYSLQKD---HETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDAR 600 (760)
Q Consensus 530 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~ 600 (760)
+|.+++.+..+|.+++..++ .++|..+++++++++|+++.++..+|..++..|+|++|+.+++++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35555666666665554433 456666666666666666666666666666666666666666666665554
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.25 E-value=7e-06 Score=71.09 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 004340 673 MYQKANILLSLEKFDEALEVLEELKEYA-------PRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATI 743 (760)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~l~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~ 743 (760)
.+.+|..++..|+|..|+.+|+++++.. +..+.++..+|.++.++|++++|+.++++++.++|++..+...
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 3444445555555555555555444431 1234455555555555555555555555555555555544333
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.21 E-value=4.1e-06 Score=92.08 Aligned_cols=84 Identities=8% Similarity=-0.055 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCh---HHHHHHHH
Q 004340 615 QEKFEFSEHHFRMAFQI-----SPHSS---VIMSYLGTAMHALKRSGEAIEMMEKAILA-----DKKNP---LPMYQKAN 678 (760)
Q Consensus 615 ~g~~~~A~~~l~~al~~-----~p~~~---~~~~~la~~~~~~g~~~eAl~~l~~al~~-----~p~~~---~~~~~la~ 678 (760)
.|+|++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++++ .|+++ ..+.++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666666553 23332 23445555555555555555555555543 22222 23344444
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 004340 679 ILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 679 ~~~~~g~~~eA~~~l~~al~ 698 (760)
+|..+|++++|+.+|+++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 44444444444444444443
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.10 E-value=2.7e-05 Score=67.33 Aligned_cols=77 Identities=10% Similarity=0.021 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004340 533 APQSWCAMGNCYSLQKDHETALKNFQRAVQLN-------PRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSW 605 (760)
Q Consensus 533 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~-------p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~ 605 (760)
++.-++.+|..++..++|..|+..|+.|++.. +....++..+|.++...|++++|+.++++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45566777777777777777777777777652 22345556666666666666666666666666666665555
Q ss_pred HHHH
Q 004340 606 YGLG 609 (760)
Q Consensus 606 ~~la 609 (760)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 4444
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.09 E-value=1.1e-05 Score=88.55 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=48.7
Q ss_pred hcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHH
Q 004340 546 LQKDHETALKNFQRAVQL-----NPRFA---YGHTLCGHEYVALEDFENGIRSYQSALRV-----DARH---YNSWYGLG 609 (760)
Q Consensus 546 ~~g~~~~A~~~~~kal~~-----~p~~~---~a~~~la~~~~~~g~~e~A~~~~~~al~~-----~p~~---~~a~~~la 609 (760)
..|+|++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++++ .+++ ...+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356777777777777664 33333 34555666666666666666666666553 2222 23455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 004340 610 MVYLRQEKFEFSEHHFRMAFQI 631 (760)
Q Consensus 610 ~~~~~~g~~~~A~~~l~~al~~ 631 (760)
.+|..+|++++|+.+|++|+++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 5555555555555555555543
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.05 E-value=2.5e-05 Score=69.19 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=79.8
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 004340 651 RSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDE---ALEVLEELKEYA-P-RESGVYALMGKIYKRRNMHEKAML 725 (760)
Q Consensus 651 ~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e---A~~~l~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 725 (760)
....+.+.|.+.+..++....+.+.+|+++.+..+... ++.+++..+... | ..-+.++.||..++++|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34456667777777777888888999999988877665 888888887765 4 345788999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHh
Q 004340 726 HFGLALDLKPSATDVATIKAAIEK 749 (760)
Q Consensus 726 ~~~~al~l~p~~~~a~~~l~~l~~ 749 (760)
+++.+++..|++..+..++..++.
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELERLIDK 119 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999888888777653
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.04 E-value=1.3e-05 Score=88.17 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=60.2
Q ss_pred HHhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHH
Q 004340 544 YSLQKDHETALKNFQRAVQL-----NPRF---AYGHTLCGHEYVALEDFENGIRSYQSALRV-----DARH---YNSWYG 607 (760)
Q Consensus 544 ~~~~g~~~~A~~~~~kal~~-----~p~~---~~a~~~la~~~~~~g~~e~A~~~~~~al~~-----~p~~---~~a~~~ 607 (760)
+..+|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ .+++ ...+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44667888888888888764 3333 345667777777777777777777777764 2333 345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 608 LGMVYLRQEKFEFSEHHFRMAFQI 631 (760)
Q Consensus 608 la~~~~~~g~~~~A~~~l~~al~~ 631 (760)
||.+|..+|++++|+.+|++|+++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 777777777777777777777664
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.04 E-value=1.7e-05 Score=87.16 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=49.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCh---HHH
Q 004340 610 MVYLRQEKFEFSEHHFRMAFQI-----SPHS---SVIMSYLGTAMHALKRSGEAIEMMEKAILA-----DKKNP---LPM 673 (760)
Q Consensus 610 ~~~~~~g~~~~A~~~l~~al~~-----~p~~---~~~~~~la~~~~~~g~~~eAl~~l~~al~~-----~p~~~---~~~ 673 (760)
.-+..+|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|+++ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3344566666666666666654 2333 234555666666666666666666666543 23333 334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 674 YQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
+++|.+|..+|++++|+.+|+++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5555555555555555555555554
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.64 E-value=0.00044 Score=61.19 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHHH
Q 004340 618 FEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGE---AIEMMEKAILAD-K-KNPLPMYQKANILLSLEKFDEALEV 692 (760)
Q Consensus 618 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e---Al~~l~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~~~ 692 (760)
...+...|.+....++....+.+.+|+++.+.....+ ++.+++..+... | ..-++++.+|..++++|+|++|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3455566666666666777777777777777665554 777777766655 3 3456777788888888888888888
Q ss_pred HHHHHHHCCCCHHHHHHHHHH
Q 004340 693 LEELKEYAPRESGVYALMGKI 713 (760)
Q Consensus 693 l~~al~~~p~~~~~~~~la~~ 713 (760)
++.+++..|++..+......+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 888888888777666554444
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.60 E-value=0.0013 Score=59.35 Aligned_cols=109 Identities=10% Similarity=0.007 Sum_probs=73.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 631 ISPHSSVIMSYLGTAMHALKRS------GEAIEMMEKAILADKKN--------PLPMYQKANILLSLEKFDEALEVLEEL 696 (760)
Q Consensus 631 ~~p~~~~~~~~la~~~~~~g~~------~eAl~~l~~al~~~p~~--------~~~~~~la~~~~~~g~~~eA~~~l~~a 696 (760)
+.|.+++.|..+...+.+.|+. ++-++.|++|+..-|-. ...|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3556666666666666666665 55666666666554432 2334444433 4557888888888888
Q ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004340 697 KEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDV 740 (760)
Q Consensus 697 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 740 (760)
+.++...+.+|...|....++|+...|.+.+.+++.+.|...+.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 87777777888888888888888888888888888888877653
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.53 E-value=0.0016 Score=58.91 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004340 598 DARHYNSWYGLGMVYLRQEKF------EFSEHHFRMAFQISPHS--------SVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (760)
Q Consensus 598 ~p~~~~a~~~la~~~~~~g~~------~~A~~~l~~al~~~p~~--------~~~~~~la~~~~~~g~~~eAl~~l~~al 663 (760)
.|++++.|........+.|+. ++-++.|++|+..-|.. ..+|..+|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 455666666666665555665 55556666666554432 2344444433 34467777777777776
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Q 004340 664 LADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESG 705 (760)
Q Consensus 664 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 705 (760)
.+....+.+|...|..-.++|+...|.+.+.+++.+.|....
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 666556666666777777777777777777777776665443
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.48 E-value=0.002 Score=57.79 Aligned_cols=82 Identities=10% Similarity=0.046 Sum_probs=70.3
Q ss_pred CCChHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 004340 667 KKNPLPMYQKANILLSLEKF---DEALEVLEELKEYAPR-ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVAT 742 (760)
Q Consensus 667 p~~~~~~~~la~~~~~~g~~---~eA~~~l~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 742 (760)
.-.+.+.+++|+++.+..+. .+++.+++..+...|. .-+.++.||..++++|+|++|.++.+.+|+..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678899999999988754 5789999999988884 4678999999999999999999999999999999998888
Q ss_pred HHHHHH
Q 004340 743 IKAAIE 748 (760)
Q Consensus 743 ~l~~l~ 748 (760)
++..++
T Consensus 116 Lk~~Ie 121 (144)
T 1y8m_A 116 LKSMVE 121 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877664
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.44 E-value=0.00081 Score=59.61 Aligned_cols=82 Identities=10% Similarity=0.048 Sum_probs=70.5
Q ss_pred CChHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 004340 668 KNPLPMYQKANILLSLEKF---DEALEVLEELKEYAPR-ESGVYALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATI 743 (760)
Q Consensus 668 ~~~~~~~~la~~~~~~g~~---~eA~~~l~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~ 743 (760)
-.+.+.+++|+++.+..+. .+++.+++..++..|. .-+.++.||..+.++|+|++|.++.+.+++..|++..+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3568889999999988754 5789999999988884 46889999999999999999999999999999999998888
Q ss_pred HHHHHh
Q 004340 744 KAAIEK 749 (760)
Q Consensus 744 l~~l~~ 749 (760)
+..++.
T Consensus 118 k~~Ie~ 123 (134)
T 3o48_A 118 KSMVED 123 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887753
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.22 E-value=0.0016 Score=60.22 Aligned_cols=132 Identities=13% Similarity=0.117 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHH
Q 004340 570 GHTLCGHEYVALEDFENGIRSYQSALRVDARH---------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISP---HSSV 637 (760)
Q Consensus 570 a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~---------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~ 637 (760)
+++.-...+...|.|+.|+-....++....++ +.++..+|.+++..++|..|...|+++++... ....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455566666777777777776665543221 33566677777777777777777777665421 1111
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIY 714 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~ 714 (760)
....++. ...+.. ... .+.+.++.|.++.||.+++++++|+..++..-.. ...+.+...||++|
T Consensus 102 ~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred ccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 1100000 000000 000 1234467777888888888888888777653211 13566777777765
No 232
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.20 E-value=0.26 Score=56.08 Aligned_cols=289 Identities=9% Similarity=-0.062 Sum_probs=172.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Q 004340 434 RILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHL 513 (760)
Q Consensus 434 ~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 513 (760)
..+..+...+..|++..+..+...+ ..+|-.+++-+..-..-....... -+...+...|+.+..-......+..+
T Consensus 8 ~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL~~yl~y~~l~~~l~~~~~~----ev~~Fl~~~~~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 8 SRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhh-cCCCcHHHHHHHHHHhCcccCCHH----HHHHHHHHCCCChhHHHHHHHHHHHH
Confidence 4566777888899998888876655 345654444322222212222344 44455667787776554444443333
Q ss_pred ---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------------CHHHHH
Q 004340 514 ---KEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPR------------------FAYGHT 572 (760)
Q Consensus 514 ---~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~------------------~~~a~~ 572 (760)
++......++.. .|.+...-|..+......|+..+|.....++...... ....+.
T Consensus 83 ~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp HHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred HhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 344444443322 3778888888888888899988777766666543221 112223
Q ss_pred HHHHHHHHcCCHHHHHHHHHH-------------HHHhCCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHH
Q 004340 573 LCGHEYVALEDFENGIRSYQS-------------ALRVDARHYNS-------------WYGLGMVYLRQEKFEFSEHHFR 626 (760)
Q Consensus 573 ~la~~~~~~g~~e~A~~~~~~-------------al~~~p~~~~a-------------~~~la~~~~~~g~~~~A~~~l~ 626 (760)
......+..|+...|...... ++..+|..... ...++.......+.+.|...+.
T Consensus 159 ~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~ 238 (618)
T 1qsa_A 159 ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIP 238 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 334445555655555443332 12223333221 2233444455568889998888
Q ss_pred HHHHhCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 627 MAFQISPHSSVIM----SYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 627 ~al~~~p~~~~~~----~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
.......-+.... ..++.-+...+...++...+.+......++.. .-.++...+..|+++.|..+|+.+-.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~ 317 (618)
T 1qsa_A 239 SLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRRGLNTWLARLPMEAKE 317 (618)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGG
T ss_pred hhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHCCCHHHHHHHHHHccccccc
Confidence 7765444443322 22333333344366788888876654443333 333444455779999999999876553345
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 703 ESGVYALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 703 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
.....|.+|+++...|+.++|..+|+++..
T Consensus 318 ~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 318 KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 688899999999999999999999999986
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.74 E-value=0.028 Score=50.41 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Q 004340 633 PHSSVIMSYLGTAMHALKRS---GEAIEMMEKAILADKK-NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYA 708 (760)
Q Consensus 633 p~~~~~~~~la~~~~~~g~~---~eAl~~l~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 708 (760)
.-.....+++|+++.+.... .+++.+++..+...|. .-++++.+|..++++|+|++|..+.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44577778888888877643 4678888888887774 4577888888888888888888888888888888876665
Q ss_pred HHHHH
Q 004340 709 LMGKI 713 (760)
Q Consensus 709 ~la~~ 713 (760)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.55 E-value=0.013 Score=51.85 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 004340 635 SSVIMSYLGTAMHALKRS---GEAIEMMEKAILADKK-NPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALM 710 (760)
Q Consensus 635 ~~~~~~~la~~~~~~g~~---~eAl~~l~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 710 (760)
.+.+.+.+|+++.+.... .+++.+++..+...|. .-+.++.+|..++++|+|++|.++.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 456667777777766543 4577777777776663 356777777777777777777777777777777776665554
Q ss_pred HHH
Q 004340 711 GKI 713 (760)
Q Consensus 711 a~~ 713 (760)
..+
T Consensus 119 ~~I 121 (134)
T 3o48_A 119 SMV 121 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.20 E-value=0.13 Score=60.61 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=65.6
Q ss_pred HHhcCChHHHHH-HHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Q 004340 442 MSCMYRCKDALD-VYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLS 520 (760)
Q Consensus 442 ~~~~g~~~eAi~-~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~ 520 (760)
.+..+++++|.+ ++..+. + ...+..++..+...|.+++|++..+. +... ......++++++|.
T Consensus 609 ~~~~~~~~~a~~~~l~~i~----~-~~~~~~~~~~l~~~~~~~~a~~~~~~--------~~~~---f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE----G-KDSLTKIARFLEGQEYYEEALNISPD--------QDQK---FELALKVGQLTLAR 672 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC----C-HHHHHHHHHHHHHTTCHHHHHHHCCC--------HHHH---HHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCC----c-hHHHHHHHHHHHhCCChHHheecCCC--------cchh---eehhhhcCCHHHHH
Confidence 356789999988 553322 0 12236677778888888888876532 1111 22345677777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004340 521 YLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRA 560 (760)
Q Consensus 521 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ka 560 (760)
.+++. ..++..|..+|..+...++++.|+++|.++
T Consensus 673 ~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 673 DLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 76532 356788888888888888888888888875
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.18 E-value=0.19 Score=59.09 Aligned_cols=75 Identities=15% Similarity=0.064 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004340 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEK 617 (760)
Q Consensus 538 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 617 (760)
..++..+...|.+++|++..+ ++... .......|++++|.+..+. .++...|..+|..+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 445555566666666655442 11111 2234556677766665432 2445667777777777777
Q ss_pred HHHHHHHHHHH
Q 004340 618 FEFSEHHFRMA 628 (760)
Q Consensus 618 ~~~A~~~l~~a 628 (760)
++.|+.+|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77777777664
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.15 E-value=0.51 Score=50.41 Aligned_cols=115 Identities=15% Similarity=0.010 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHH
Q 004340 538 CAMGNCYSLQKDHETALKNFQRAVQLNP--R----FAYGHTLCGHEYVALEDFENGIRSYQSALRVD---ARH----YNS 604 (760)
Q Consensus 538 ~~la~~~~~~g~~~~A~~~~~kal~~~p--~----~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~---p~~----~~a 604 (760)
..+|..|+..|+|.+|++.+.+..+.-. + ..+++..-..+|...+++.++...|.++.... +.+ ...
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 3789999999999999999988877411 1 23567777888999999999999998887642 122 234
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCh
Q 004340 605 WYGLGMVYL-RQEKFEFSEHHFRMAFQISPHS-----SVIMSYLGTAMHALKRS 652 (760)
Q Consensus 605 ~~~la~~~~-~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~~ 652 (760)
...-|..++ ..++|..|..+|-+++...... ..+...++.+-...++.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 455677888 8999999999998887543221 12334455555555553
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.044 Score=63.60 Aligned_cols=114 Identities=12% Similarity=0.085 Sum_probs=59.9
Q ss_pred HcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHh--------CCCC----------HH
Q 004340 580 ALED-FENGIRSYQSALRVDARHYNSWYGLGMVYL--RQ-EKFEFSEHHFRMAFQI--------SPHS----------SV 637 (760)
Q Consensus 580 ~~g~-~e~A~~~~~~al~~~p~~~~a~~~la~~~~--~~-g~~~~A~~~l~~al~~--------~p~~----------~~ 637 (760)
..+. ++.|+.++++....+|... .++..+.+.. .. .+--+|+..+.++++. .+.+ ..
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3444 5778888888888777643 2233332222 11 2234566666666532 1222 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLE 694 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 694 (760)
++..-+..+...|+++-|+++.++|+...|.+...|+.|+.+|..+|+|+.|+-.+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 333344445555555555555555555555555555555555555555555554443
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.71 E-value=0.44 Score=50.94 Aligned_cols=167 Identities=7% Similarity=-0.063 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCC--HH--
Q 004340 500 LEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQS-----WCAMGNCYSL-QKDHETALKNFQRAVQLNPRF--AY-- 569 (760)
Q Consensus 500 ~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~-----~~~la~~~~~-~g~~~~A~~~~~kal~~~p~~--~~-- 569 (760)
..+...++..|...++.++...++......-+.-+.+ ...+-..+.. .+..+.-++....+++..... ..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888877665544333322 2233333333 245555566666666542221 11
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH--
Q 004340 570 --GHTLCGHEYVALEDFENGIRSYQSALRVDAR------HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS---PHSS-- 636 (760)
Q Consensus 570 --a~~~la~~~~~~g~~e~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~---p~~~-- 636 (760)
.-..+|..|+..|+|.+|...+.+..+.-.. -.+.+.....+|...+++.++...+.++.... +.++
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 1236889999999999999888888774211 14566777788889999999999998886542 1233
Q ss_pred --HHHHHHHHHHH-HcCChHHHHHHHHHHHHhC
Q 004340 637 --VIMSYLGTAMH-ALKRSGEAIEMMEKAILAD 666 (760)
Q Consensus 637 --~~~~~la~~~~-~~g~~~eAl~~l~~al~~~ 666 (760)
.+...-|.++. ..++|.+|..+|-+++...
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 34556677888 7899999999988887543
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.091 Score=60.94 Aligned_cols=116 Identities=12% Similarity=0.018 Sum_probs=86.2
Q ss_pred ccC-HHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHc-cCHHHHHHHHHHHHHh--------CCCC----------HHHH
Q 004340 479 VVD-YLEAERAFTLARRASPYSLEGMDI-YSTVLYHL-KEDMKLSYLAQELITT--------DRLA----------PQSW 537 (760)
Q Consensus 479 ~g~-~~~A~~~~~~al~~~p~~~~~~~~-la~~l~~l-~~~~~a~~~~~~~l~~--------~p~~----------~~~~ 537 (760)
.++ ++.|+.+|+++...+|.....+.. +..++... .+..++..++.+.++. .+.+ ...+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 445 688999999999999865432221 11222222 3466777777776642 2222 2355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 538 CAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSA 594 (760)
Q Consensus 538 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~a 594 (760)
...+..+...|+++-|+++.++|+...|.....|..|+.+|..+|+|+.|+-.+..+
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 666788888999999999999999999999999999999999999999999887765
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.69 E-value=1 Score=51.28 Aligned_cols=50 Identities=10% Similarity=-0.174 Sum_probs=35.9
Q ss_pred hcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Q 004340 444 CMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASP 497 (760)
Q Consensus 444 ~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p 497 (760)
..+++..-+..+.. .|.+....+..+.+....|+-.+|.....++.....
T Consensus 84 ~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~ 133 (618)
T 1qsa_A 84 RREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (618)
T ss_dssp HTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred hCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Confidence 36677777775554 277888888888889999998878777666655443
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.72 E-value=1.6 Score=47.69 Aligned_cols=184 Identities=10% Similarity=-0.014 Sum_probs=116.1
Q ss_pred CChHHHHHHHhcc------cccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HccC
Q 004340 446 YRCKDALDVYLKL------PHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLY----HLKE 515 (760)
Q Consensus 446 g~~~eAi~~l~~~------~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~----~l~~ 515 (760)
+++++|++.+..+ ....+....++..+...++..|+|+...+.+.-+.........+...+...+. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 4566776666443 22345577888999999999999999888776555444333333322222111 1111
Q ss_pred HHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHH
Q 004340 516 DMKLSYLAQELITTD----RL-------APQSWCAMGNCYSLQKDHETALKNFQRAVQLN--PR----FAYGHTLCGHEY 578 (760)
Q Consensus 516 ~~~a~~~~~~~l~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~--p~----~~~a~~~la~~~ 578 (760)
.+. ......+..- .. .......++.+|...|++.+|...+....... .. -.+.+.....+|
T Consensus 110 ~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 111 1111222211 10 23455778999999999999999988876421 11 135677788889
Q ss_pred HHcCCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 579 VALEDFENGIRSYQSALR---VDARH----YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI 631 (760)
Q Consensus 579 ~~~g~~e~A~~~~~~al~---~~p~~----~~a~~~la~~~~~~g~~~~A~~~l~~al~~ 631 (760)
...+++.+|...+.++.. ..+.. ...+...|.++...++|.+|-.+|..++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999998888643 12222 235667788888899999999888888754
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.46 Score=44.49 Aligned_cols=99 Identities=16% Similarity=0.027 Sum_probs=61.7
Q ss_pred HHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Q 004340 442 MSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLSY 521 (760)
Q Consensus 442 ~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~~ 521 (760)
.+..|+++.|.++.+.+ ++...|..+|......|+++-|..+|.++-. . ..+..+|...|+.+....
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~---~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----F---DKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----H---HHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----H---HHHHHHHHHhCCHHHHHH
Confidence 46789999999998876 5678999999999999999999999988632 2 223333444455444444
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004340 522 LAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQ 558 (760)
Q Consensus 522 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 558 (760)
+.+.+..... +.....+++..|+++++++.|.
T Consensus 82 la~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 82 MQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 4333322221 1122233445555555555543
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.60 E-value=0.68 Score=49.61 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 004340 606 YGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEA-IEMMEKAILADKKNPLPMYQKANILLSLE 684 (760)
Q Consensus 606 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA-l~~l~~al~~~p~~~~~~~~la~~~~~~g 684 (760)
...|......|+.+.|...+++++.+.......-. . ...+-.+ ...+++.. ..+...++..+...|
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~--~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g 185 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--R-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACG 185 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--T-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCC--C-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCC
Confidence 33444455678999999999999988543211000 0 0111111 11111110 113344566666777
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004340 685 KFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHFGLA 730 (760)
Q Consensus 685 ~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 730 (760)
++.+|+..+..++..+|-+..++..+..++...|+..+|+..|+++
T Consensus 186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 186 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777766665
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.58 E-value=2.3 Score=46.37 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC-C-CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCC----HHH
Q 004340 640 SYLGTAMHALKRSGEAIEMMEKAILAD-K-KN----PLPMYQKANILLSLEKFDEALEVLEELKE---YAPRE----SGV 706 (760)
Q Consensus 640 ~~la~~~~~~g~~~eAl~~l~~al~~~-p-~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~---~~p~~----~~~ 706 (760)
..++.++...|++.+|..++.....-. . .+ .+.+....++|...+++.+|...+.++.. ..+.. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 344445555555555554444433211 0 00 13344444455555555555555544421 11111 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 707 YALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 707 ~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
+...|.++...++|.+|..+|..++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34445555555555555555555543
No 246
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.50 E-value=0.56 Score=55.65 Aligned_cols=99 Identities=7% Similarity=-0.023 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRMAFQI----SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD-KKNPLPMYQK 676 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~-p~~~~~~~~l 676 (760)
...+..+...|++.|+.++|...|....+. ..-+...|+.+...|.+.|+.++|.++|+++.+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 456788888999999999999999765432 34468889999999999999999999999988764 2356678888
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHHC
Q 004340 677 ANILLSLEK-FDEALEVLEELKEYA 700 (760)
Q Consensus 677 a~~~~~~g~-~~eA~~~l~~al~~~ 700 (760)
..++.+.|+ .++|.++|+++.+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 888888887 478889999888754
No 247
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.06 E-value=3.6 Score=37.79 Aligned_cols=79 Identities=9% Similarity=-0.125 Sum_probs=35.6
Q ss_pred HHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Q 004340 441 RMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDMKLS 520 (760)
Q Consensus 441 ~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~~a~ 520 (760)
..++-.+|+.++-+-.-+....| ..-..++..++-.|+|..|+-++... +...+.+..+.|+..++++..|.
T Consensus 11 Ks~kY~dYdt~~fLsa~L~~~~~---eY~lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~ 82 (242)
T 3kae_A 11 KSIRYRDYETAIFLAACLLPCKP---EYRMLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAI 82 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhcccccHHHHHHHHHccCCh---HHHhhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556655543332222222 33344566666666666666554321 22333444444444444444444
Q ss_pred HHHHHHH
Q 004340 521 YLAQELI 527 (760)
Q Consensus 521 ~~~~~~l 527 (760)
..++.++
T Consensus 83 ~~le~il 89 (242)
T 3kae_A 83 KSLESIL 89 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.96 E-value=1.1 Score=41.80 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004340 602 YNSWYGLGMVYLRQEKFEFSEHHFRM 627 (760)
Q Consensus 602 ~~a~~~la~~~~~~g~~~~A~~~l~~ 627 (760)
...|..+|......|+++-|+.+|.+
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33444444444444444444444433
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.69 E-value=0.87 Score=48.76 Aligned_cols=112 Identities=17% Similarity=0.077 Sum_probs=79.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 004340 574 CGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS-EHHFRMAFQISPHSSVIMSYLGTAMHALKRS 652 (760)
Q Consensus 574 la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 652 (760)
.|......|+.+.|...+.+++.+.....-. ... ...|-.+ ...++... ..+...++..+...|++
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~ 187 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRA 187 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCH
Confidence 3444455789999999999999875432111 000 0112111 12222221 22455678888999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 653 GEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKE 698 (760)
Q Consensus 653 ~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 698 (760)
.+|+..+..++..+|-+..++..+..+|...|+..+|++.|+++..
T Consensus 188 ~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988754
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.50 E-value=1.4 Score=43.98 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=33.6
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004340 545 SLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARH 601 (760)
Q Consensus 545 ~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~ 601 (760)
...|..++|+......++..|.+......+..+++-.|+++.|..-++.+.+++|..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 445555666666666666666666665556666666666666666666655555553
No 251
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.31 E-value=0.85 Score=54.19 Aligned_cols=99 Identities=11% Similarity=-0.089 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 004340 534 PQSWCAMGNCYSLQKDHETALKNFQRAVQL----NPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVD-ARHYNSWYGL 608 (760)
Q Consensus 534 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~----~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~-p~~~~a~~~l 608 (760)
...+..+...|++.|+.++|..+|.++... -.-+...|..+...|++.|++++|.++|+++.+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 357889999999999999999999876532 23457899999999999999999999999998753 2357888888
Q ss_pred HHHHHHcCCH-HHHHHHHHHHHHhC
Q 004340 609 GMVYLRQEKF-EFSEHHFRMAFQIS 632 (760)
Q Consensus 609 a~~~~~~g~~-~~A~~~l~~al~~~ 632 (760)
..++.+.|+. ++|.++|+++.+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8899999984 78899999998764
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.98 E-value=10 Score=44.85 Aligned_cols=287 Identities=11% Similarity=0.028 Sum_probs=159.6
Q ss_pred HHHHhcCChHHHHHHHhcccccC-CC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---C---CH----HHHH
Q 004340 440 YRMSCMYRCKDALDVYLKLPHKH-YN----TGWVLSQVGKAYFEVVDYLEAERAFTLARRASP---Y---SL----EGMD 504 (760)
Q Consensus 440 ~~~~~~g~~~eAi~~l~~~~~~~-p~----~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p---~---~~----~~~~ 504 (760)
.-.+..|+.++++..+.+.+... .. ..-+++.+|.++...+ .+++.++...+.... . .. .+..
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 34467889999999999887632 22 3446677777776665 468888888776432 0 11 1223
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004340 505 IYSTVLYHLKEDMKLSYLAQELITTDRLA--PQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALE 582 (760)
Q Consensus 505 ~la~~l~~l~~~~~a~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g 582 (760)
.+|.++.-.++ +++...+..++..+... ..+-+.+|.++...|+-+-...++..+.....+...-...+|..+...|
T Consensus 460 GLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 460 GIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence 33333333333 45555555655543321 1355678888888898877777777666543332233344555555678
Q ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004340 583 DFENGIRSYQSALRVDAR--HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMME 660 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~ 660 (760)
+.+.+-...+........ ...+.+.+|..|...|+...-...+..+.....++..-...+|..+...|+.+.+.+.+.
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 877776666655443211 123345677788899997665557766664332233323334444445666655555444
Q ss_pred HHHHhCCCChHHHHHHHHHHHHc--CC-HHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcCC-----HHHHHHHHHH
Q 004340 661 KAILADKKNPLPMYQKANILLSL--EK-FDEALEVLEELKEYAPRES---GVYALMGKIYKRRNM-----HEKAMLHFGL 729 (760)
Q Consensus 661 ~al~~~p~~~~~~~~la~~~~~~--g~-~~eA~~~l~~al~~~p~~~---~~~~~la~~~~~~g~-----~~~A~~~~~~ 729 (760)
...+ ..++.+.+..+.++... |. ..+|+..+..+.. ++++. .+...||.+.....+ ...-++.+.+
T Consensus 619 ~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~ 695 (963)
T 4ady_A 619 LLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLS 695 (963)
T ss_dssp TGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHH
T ss_pred HHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 3332 33566666655554433 22 2678888887753 44321 345556665544332 3334444444
Q ss_pred HHh
Q 004340 730 ALD 732 (760)
Q Consensus 730 al~ 732 (760)
.+.
T Consensus 696 ~~~ 698 (963)
T 4ady_A 696 VIT 698 (963)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.91 E-value=4.2 Score=50.03 Aligned_cols=118 Identities=8% Similarity=-0.033 Sum_probs=69.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------h--
Q 004340 540 MGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALR--------------------V-- 597 (760)
Q Consensus 540 la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~--------------------~-- 597 (760)
+...+...+.++-|.+ .+..-+.++...+.+|.++...|++++|..+|+++.. .
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3444555555554433 2334455565666677777777777777777765421 0
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCChHHHHHHHHH
Q 004340 598 -DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH-SS----VIMSYLGTAMHALKRSGEAIEMMEK 661 (760)
Q Consensus 598 -~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~----~~~~~la~~~~~~g~~~eAl~~l~~ 661 (760)
.......|+.+..++.+.+.++.+++..+.|++..+. +. ..|..+-..+...|+|++|...+..
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 1123445566666777777777777777777766432 22 1455666666777777777666543
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.83 E-value=2 Score=47.21 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 570 GHTLCGHEYVALEDFENGIRSYQSALRVDARH-------YNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (760)
Q Consensus 570 a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~-------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 634 (760)
.+..+-..|...+.+++|..+..++. .|.. ...++.+|.++..+++|.+|.+++..|+...|.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 34445555555555555555555543 2211 233455566666666666666666666655543
No 255
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.64 E-value=1.6 Score=47.94 Aligned_cols=188 Identities=13% Similarity=0.003 Sum_probs=89.5
Q ss_pred HHhcCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHh-----
Q 004340 544 YSLQKDHETALKNFQRAVQ-----------LNPRFAYGHTLCGHEYVALEDFENG----------IRSYQSALRV----- 597 (760)
Q Consensus 544 ~~~~g~~~~A~~~~~kal~-----------~~p~~~~a~~~la~~~~~~g~~e~A----------~~~~~~al~~----- 597 (760)
++..+++++|.++-...+. +|.-.+.+|+..+.++...|+.... ...+..+++.
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 3445556665555443331 1333455666666666666655442 2223233332
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004340 598 DAR-HYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHS-------SVIMSYLGTAMHALKRSGEAIEMMEKAILADKKN 669 (760)
Q Consensus 598 ~p~-~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~ 669 (760)
+.. ....+..+-+.|...+.|+.|..+..++. .|.. ...++.+|.++.-.++|.+|.+++..|+...|.+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 221 25567888899999999999999999884 4432 4467788999999999999999999999988765
Q ss_pred hH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Q 004340 670 PL-------PMYQKANILLSLEKFDEALEVLEELKEYAPRE---SGVYALMGKIYKRRNM---HEKAMLHFGLALDLKPS 736 (760)
Q Consensus 670 ~~-------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~p~ 736 (760)
.. ++-.+..+-.-+|+..+- ..|. .+.. ...|+.++.++ +.|+ +..+++-++..+..+..
T Consensus 304 ~~a~gfr~~a~K~lI~V~LLlG~iP~r-~lf~-----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~Dgt 376 (523)
T 4b4t_S 304 SKSLGFLQQSNKLHCCIQLLMGDIPEL-SFFH-----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQLLLKDDT 376 (523)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHTCCCCH-HHHT-----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHhHHhhcCCCCCh-HHhh-----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcceeccCCh
Confidence 31 222223333335654321 1111 1211 23466677775 4566 44566666666777766
Q ss_pred hHHH
Q 004340 737 ATDV 740 (760)
Q Consensus 737 ~~~a 740 (760)
..-+
T Consensus 377 y~LI 380 (523)
T 4b4t_S 377 YQLC 380 (523)
T ss_dssp THHH
T ss_pred hHHH
Confidence 5544
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.63 E-value=11 Score=39.05 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCh---HHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRC---KDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTL 491 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~---~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~ 491 (760)
+-+.+.+-...+..|+| -||-..|+. ++.-|.+.++|++|++++..
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RT--------------i~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRL--------------VAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHH--------------HHHHHHhhcCHHHHHHHHHH
Confidence 33445555566777888 777777664 34446667777777776544
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.55 E-value=1 Score=44.95 Aligned_cols=121 Identities=11% Similarity=-0.047 Sum_probs=84.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 004340 611 VYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEAL 690 (760)
Q Consensus 611 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 690 (760)
.+++.|+.++|+......++.+|.+......+..+++-.|+++.|.+-++.+.+++|.....- ..|.. .-.|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a----~~yr~---lI~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA----SQLRH---LVKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH----HHHHH---HHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH----HHHHH---HHHHH
Confidence 456789999999999999999999999999999999999999999999999999999764322 11111 01111
Q ss_pred HHHHHHHHH--CC---CC-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004340 691 EVLEELKEY--AP---RE-S--GVYALMGKIYKRRNMHEKAMLHFGLALDLKPSAT 738 (760)
Q Consensus 691 ~~l~~al~~--~p---~~-~--~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 738 (760)
..=.+.+.- .| .. + .....-+......|+.++|...-.++++..|...
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 111122211 11 11 1 2233345555667999999999999998877643
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.43 E-value=2.3 Score=52.36 Aligned_cols=123 Identities=7% Similarity=-0.049 Sum_probs=59.4
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCH
Q 004340 528 TTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQL-----------------------NPRFAYGHTLCGHEYVALEDF 584 (760)
Q Consensus 528 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~-----------------------~p~~~~a~~~la~~~~~~g~~ 584 (760)
..-+.++...+.+|.++...|++++|..+|+++-.- ....+..|..+..++...+.+
T Consensus 836 ~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~ 915 (1139)
T 4fhn_B 836 GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAY 915 (1139)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCC
T ss_pred hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCH
Confidence 334555555566666666666666666666554210 001122344455555556666
Q ss_pred HHHHHHHHHHHHhCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004340 585 ENGIRSYQSALRVDA-RHY----NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKR 651 (760)
Q Consensus 585 e~A~~~~~~al~~~p-~~~----~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 651 (760)
+.++++.+.|++..+ ++. ..|..+-..+...|+|++|...+...-. .......+..+...+++.|.
T Consensus 916 ~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 916 IDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCC
Confidence 666666666665432 221 1344455555556666666555533221 11223344444444444444
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.56 E-value=0.78 Score=49.85 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLN---PRFAYGHTLCGHEYVALEDFENGIRSYQSAL 595 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~---p~~~~a~~~la~~~~~~g~~e~A~~~~~~al 595 (760)
.++..+|..|...|++++|.+.|.++.... ......+..+..++...+++..+...+.++.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345555555555555555555555554431 1223444444455555555555555555543
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.98 E-value=15 Score=37.52 Aligned_cols=46 Identities=11% Similarity=0.008 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004340 433 LRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLA 492 (760)
Q Consensus 433 l~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~a 492 (760)
-+.+.+-...+..|+|-||-..|+. ++.-|..+++|++|++++...
T Consensus 14 ~r~l~rl~~~I~~G~yYEAhQ~~Rt--------------l~~Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 14 AKTLQRFENKIKAGDYYEAHQTLRT--------------IANRYVRSKSYEHAIELISQG 59 (312)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccChHHHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHH
Confidence 3444555556777888888877764 444566667777777765443
No 261
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.77 E-value=1.1 Score=49.30 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 536 SWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (760)
Q Consensus 536 ~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~ 614 (760)
.+..+|.+......+..|..+|.+|..+.|.....|..+|.+....|+.-+|+-+|.+++........+..++...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4567888888888899999999999999999999999999999999999999999999988777778888888777654
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.44 E-value=2.3 Score=50.20 Aligned_cols=269 Identities=9% Similarity=0.035 Sum_probs=146.3
Q ss_pred HHccCHHHHHHHHHHHHHHC-CCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C---CH----HHHHHHHHH
Q 004340 477 FEVVDYLEAERAFTLARRAS-PYS--LEGMDIYSTVLYHLKEDMKLSYLAQELITTDR---L---AP----QSWCAMGNC 543 (760)
Q Consensus 477 ~~~g~~~~A~~~~~~al~~~-p~~--~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p---~---~~----~~~~~la~~ 543 (760)
...|+.++++..+.+.+... ..+ ..+-..+|.-+...|...++..++...+..+. . .. .+...+|.+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 34577778888877765421 122 23333444445555554566776666665433 0 11 345577777
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004340 544 YSLQKDHETALKNFQRAVQLNPRFA--YGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFS 621 (760)
Q Consensus 544 ~~~~g~~~~A~~~~~kal~~~p~~~--~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 621 (760)
+...++ +++...+...+..+.... .+-+.+|.++...|+-+....++..+.+...+...-...+|..+...|+.+.+
T Consensus 465 ~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 465 AMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp STTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred hcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 776665 466777777776443211 34456788888889887777777666654333333334445555567888777
Q ss_pred HHHHHHHHHhCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 622 EHHFRMAFQISPHSSVIM----SYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELK 697 (760)
Q Consensus 622 ~~~l~~al~~~p~~~~~~----~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 697 (760)
....+.... . .++... ..+|.+|...|+.....+++..+..-..++..-.--+|..+...|+.+.+...+....
T Consensus 544 ~~li~~L~~-~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~ 621 (963)
T 4ady_A 544 DDLITKMLA-S-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLS 621 (963)
T ss_dssp HHHHHHHHH-C-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGG
T ss_pred HHHHHHHHh-C-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 776665543 2 234333 3456677788886554446666664322222222223444444566544444443322
Q ss_pred HHCCCCHHHHHHHHHHHHHc--CC-HHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 004340 698 EYAPRESGVYALMGKIYKRR--NM-HEKAMLHFGLALDLKPSATDVATIKAAIEKLH 751 (760)
Q Consensus 698 ~~~p~~~~~~~~la~~~~~~--g~-~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l~ 751 (760)
+ -.++.+.+..+.++-.. |. ..+|+..+..+.. |+++.......-++..++
T Consensus 622 ~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 622 K--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp G--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHS
T ss_pred h--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHh
Confidence 2 23566665555554443 22 2677887777653 555544333333444333
No 263
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.27 E-value=1.3 Score=48.94 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 004340 603 NSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILADKKNPLPMYQKANILLS 682 (760)
Q Consensus 603 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~ 682 (760)
..+..+|.+......++.|..+|.+|..+.|.+...++.+|.+....|+.-+|+-+|-+++......+.+..++...+.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 45678899998899999999999999999999999999999999999999999999999998877788888888877754
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.82 E-value=1.8 Score=35.80 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=63.9
Q ss_pred HhhccchhHHHHHHhhhhcCCCchhh-HHHHHHHhhcCCHHHHHHHhccCCCcchhHHHHHHHHhcCChhHHHHhh
Q 004340 13 LRYFMYRNAIFLCERLCAEFPSEVNL-QLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSEAEAAL 87 (760)
Q Consensus 13 l~~~~~~~A~flaerl~a~~~~~~~~-~llA~~~~~~~~~~~a~~~l~~~~~~~~~yl~a~c~~~l~~~~ea~~~l 87 (760)
=-+|-++.|.-+||=|..... +|.+ ..-...+...|+|..|+.++...-.|..--++|.|-.++|.-++++.-|
T Consensus 17 TG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 17 SGQHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp HTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHH
Confidence 357889999999999988887 6644 4447778888999999999999888888889999999999999998877
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.74 E-value=1.7 Score=36.01 Aligned_cols=75 Identities=15% Similarity=0.052 Sum_probs=64.4
Q ss_pred HHhhccchhHHHHHHhhhhcCCCchhh-HHHHHHHhhcCCHHHHHHHhccCCCcchhHHHHHHHHhcCChhHHHHhh
Q 004340 12 SLRYFMYRNAIFLCERLCAEFPSEVNL-QLLATCYLQNNQAYAAYNILKGTQMALSRYLFAVACYQMDLLSEAEAAL 87 (760)
Q Consensus 12 ~l~~~~~~~A~flaerl~a~~~~~~~~-~llA~~~~~~~~~~~a~~~l~~~~~~~~~yl~a~c~~~l~~~~ea~~~l 87 (760)
.=-+|-++.|.-+||=|..... +|.+ ..-...+...|+|..|+.++...-.|..--++|.|-.++|.-++++.-|
T Consensus 17 gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 17 GTGNHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHH
Confidence 3457889999999999988887 6644 4447778888999999999999888888889999999999999998877
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.54 E-value=1.2 Score=48.29 Aligned_cols=101 Identities=11% Similarity=0.103 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH----H
Q 004340 567 FAYGHTLCGHEYVALEDFENGIRSYQSALRVD---ARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQIS--PHSS----V 637 (760)
Q Consensus 567 ~~~a~~~la~~~~~~g~~e~A~~~~~~al~~~---p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~----~ 637 (760)
...++..+|..|...|++++|.++|.++.... ....+.+..+..++...++|..+..++.++.... ..++ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 44577889999999999999999999887753 2336778888888888899999998888886542 1222 2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004340 638 IMSYLGTAMHALKRSGEAIEMMEKAILADK 667 (760)
Q Consensus 638 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p 667 (760)
+....|.++...++|.+|...|..++....
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 345566777777888888888877766543
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.47 E-value=25 Score=36.29 Aligned_cols=160 Identities=11% Similarity=0.017 Sum_probs=85.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHH
Q 004340 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA-----SPYSLEGMDIYSTVLY 511 (760)
Q Consensus 437 ~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~l~ 511 (760)
..+.++..+++|++|++++.. -+..+++.|++..|.++..-+++. .|-+.+....+..++.
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~--------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS--------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCHHHHHHHHHH--------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 346678889999999988754 455566666666666555433332 1223344444444444
Q ss_pred HccC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC
Q 004340 512 HLKE--------DMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRF-AYGHTLCGHEYVALE 582 (760)
Q Consensus 512 ~l~~--------~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~-~~a~~~la~~~~~~g 582 (760)
.... ..+++.+..+.-...-.+++.+..+|..|+..+++.+|..+|-. ..++ +..+..+-..+..
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il----g~~~s~~~~a~mL~ew~~-- 179 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL----GTKESPEVLARMEYEWYK-- 179 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT----SCTTHHHHHHHHHHHHHH--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh----cCCchHHHHHHHHHHHHH--
Confidence 3332 11222332221112235678888888888888888877777631 1111 1232222111111
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Q 004340 583 DFENGIRSYQSALRVDARHYNSWYGLGM-VYLRQEKFEFSEHHFRMAF 629 (760)
Q Consensus 583 ~~e~A~~~~~~al~~~p~~~~a~~~la~-~~~~~g~~~~A~~~l~~al 629 (760)
+..|.....+...+. .|...++...|...+....
T Consensus 180 -------------~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 180 -------------QDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -------------TSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------hcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 122444555555444 4677788888877655544
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.38 E-value=24 Score=36.05 Aligned_cols=108 Identities=7% Similarity=-0.053 Sum_probs=64.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHH
Q 004340 437 GEGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRA-----SPYSLEGMDIYSTVLY 511 (760)
Q Consensus 437 ~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~l~ 511 (760)
..+.++..+++|++|++++.. -+..+.+.|++..|.++..-+++. .+-+.+....+..++.
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~--------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ--------------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHH--------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456777888999999988764 455666777777777654444432 2334444445554444
Q ss_pred HccCHH-HHHHHHHHHHH-------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004340 512 HLKEDM-KLSYLAQELIT-------TDRLAPQSWCAMGNCYSLQKDHETALKNFQ 558 (760)
Q Consensus 512 ~l~~~~-~a~~~~~~~l~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 558 (760)
.....+ .-..+..+++. ..-.+|+.+..+|..|...+++.+|..+|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 432111 11222223322 123477888888888888888888777764
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.65 E-value=8.5 Score=34.10 Aligned_cols=128 Identities=11% Similarity=0.137 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhcccccCCCCH--HHHHHHHHH---------H---------HHccCHHHHHHHHH
Q 004340 431 GLLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNTG--WVLSQVGKA---------Y---------FEVVDYLEAERAFT 490 (760)
Q Consensus 431 ~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~~--~~l~~la~~---------~---------~~~g~~~~A~~~~~ 490 (760)
++++.|.+|...+-.|..++.+++..+.....+-.. |+...+-.. + -.-|+....+.+|-
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGV 85 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHH
Confidence 367788889999999999999999998876655322 332222211 0 01123333333332
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004340 491 LARRASPYSLEGMDIYSTVLYHLKEDMKLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQ 562 (760)
Q Consensus 491 ~al~~~p~~~~~~~~la~~l~~l~~~~~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~ 562 (760)
++ ..+.+........+...|+.++....+..++...+-+|+.++.+|.+|.+.|+..+|.+++.+|-+
T Consensus 86 ~~----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 86 IN----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HT----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hh----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 21 112222333333444555555555555554444444555555555555555555555555555543
No 270
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.44 E-value=8.3 Score=46.31 Aligned_cols=98 Identities=12% Similarity=0.012 Sum_probs=70.4
Q ss_pred CCchhhHHHHHHHhhcCCHHHHHHHhccC-CCcchhHHHHHHHHhcCChhHHHHhhCCCC------CCC-----------
Q 004340 33 PSEVNLQLLATCYLQNNQAYAAYNILKGT-QMALSRYLFAVACYQMDLLSEAEAALSPVN------EPS----------- 94 (760)
Q Consensus 33 ~~~~~~~llA~~~~~~~~~~~a~~~l~~~-~~~~~~yl~a~c~~~l~~~~ea~~~l~~~~------~~~----------- 94 (760)
..+.....|+..+...|+|.-|.+++.-+ .++...|++|+||+++|++++|...+.+.- ...
T Consensus 808 ~~~~~~~~l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll 887 (950)
T 4gq2_M 808 TENDLVTELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 887 (950)
T ss_dssp SSCCHHHHHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHH
T ss_pred CCCccHHHHHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhcc
Confidence 33444444555556678999999988876 567778999999999999999999886531 000
Q ss_pred --ccCcchHHHHHH-HHHHHHhcCChhHHHHHHHHHHhh
Q 004340 95 --AEIPNGAAGHYL-MGLIYRYTDRRKNAIHHYKMALSI 130 (760)
Q Consensus 95 --~~~p~~a~~~~l-lg~i~~~~~~~~~A~~~~~~AL~~ 130 (760)
.+.+..-+.||+ ..+|+.+.+-.+.+++.-+.||..
T Consensus 888 ~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 888 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 011122233444 488999999999999999999974
No 271
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=78.58 E-value=6.7 Score=41.77 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhccchhHHHHHHhhhhcCCCchhh-HHHHHHHhhcC----CHHHHHHHhccCCCcchhHHHHHHHHhcCC
Q 004340 5 LTDCVQNSLRYFMYRNAIFLCERLCAEFPSEVNL-QLLATCYLQNN----QAYAAYNILKGTQMALSRYLFAVACYQMDL 79 (760)
Q Consensus 5 l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~~-~llA~~~~~~~----~~~~a~~~l~~~~~~~~~yl~a~c~~~l~~ 79 (760)
+..+|+.||+.+.+.+|+.|| .+.+++-. -.--+-|++.. .+-+....+-......+ .++.++++
T Consensus 159 ~e~AV~~cl~~~r~adAllLA-----~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d~-----V~~~~l~~ 228 (399)
T 2pm7_A 159 IKSAVKNSLENDLMMEAMVIA-----LDSNNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDDL-----VENLDVSQ 228 (399)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHHH-----HHHBCGGG
T ss_pred HHHHHHHHHHCCChHHHHHHH-----HhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHHH-----HhcCChhh
Confidence 567899999999999999887 23444444 34444566542 24443332222221111 23458999
Q ss_pred hhHHHHhhCCCCCCCccCcc--h-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004340 80 LSEAEAALSPVNEPSAEIPN--G-AAGHYLMGLIYRYTDRRKNAIHHYKMALS 129 (760)
Q Consensus 80 ~~ea~~~l~~~~~~~~~~p~--~-a~~~~llg~i~~~~~~~~~A~~~~~~AL~ 129 (760)
|+|+..+|+. .. -|+ . ...+-.||.-....|+++.|.-||.-|=.
T Consensus 229 WkE~La~i~t---~a--~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~ 276 (399)
T 2pm7_A 229 WKFISKAIQN---LY--PNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGS 276 (399)
T ss_dssp HHHHHHHHHH---HC--TTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHh---cC--CccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCC
Confidence 9999999963 11 233 3 44666999999999999999999998843
No 272
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=77.77 E-value=1.8e-05 Score=84.95 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=52.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 004340 574 CGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSG 653 (760)
Q Consensus 574 la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (760)
|+.++..+|+|..|++..++| ++...|.....++...+++..|.-+--..+ +.++.. -.+...|...|.++
T Consensus 176 LAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniI-vhadeL---~elv~~YE~~G~f~ 246 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADEL---EELINYYQDRGYFE 246 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-CCSSCC---SGGGSSSSTTCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhc-ccHHHH---HHHHHHHHhCCCHH
Confidence 344444555555554444432 334455555555556666555554443333 222211 12344455666666
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 004340 654 EAIEMMEKAILADKKNPLPMYQKANILLSL 683 (760)
Q Consensus 654 eAl~~l~~al~~~p~~~~~~~~la~~~~~~ 683 (760)
+-+.+++.++.+...+......+|.+|.+-
T Consensus 247 ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 247 ELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 666666666666555666666666666543
No 273
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=74.79 E-value=3.5 Score=44.73 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=55.0
Q ss_pred HHHHhcCChhHHHHhhCCCC---C--CCccCcch--HHHHHHHHHHHHhcCChhHHHHHHHHHHhh-CCcc-----hHHH
Q 004340 72 VACYQMDLLSEAEAALSPVN---E--PSAEIPNG--AAGHYLMGLIYRYTDRRKNAIHHYKMALSI-DPLL-----WAAY 138 (760)
Q Consensus 72 ~c~~~l~~~~ea~~~l~~~~---~--~~~~~p~~--a~~~~llg~i~~~~~~~~~A~~~~~~AL~~-np~~-----w~af 138 (760)
++|+++++..-|..++...+ . ....+|.+ +.=+|.+|++|...++..+|.+++..|++. .|-- +..+
T Consensus 184 kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n 263 (455)
T 3t5v_B 184 NIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRN 263 (455)
T ss_dssp HHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhH
Confidence 88999999999988875431 1 23445544 668999999999999999999999999999 7765 5666
Q ss_pred HHH
Q 004340 139 EEL 141 (760)
Q Consensus 139 ~~L 141 (760)
.++
T Consensus 264 ~~~ 266 (455)
T 3t5v_B 264 GTR 266 (455)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.62 E-value=34 Score=32.43 Aligned_cols=67 Identities=4% Similarity=0.003 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 567 FAYGHTLCGHEYVALEDFENGIRSYQSALRV--DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (760)
Q Consensus 567 ~~~a~~~la~~~~~~g~~e~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 634 (760)
....|...+..+ ..+...++..+|.-+... ....+..|...|..+...|++.+|..+|+.+++....
T Consensus 79 YLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 79 FLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 334455544443 233355666666666553 3445666677777777777777777777777766543
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.23 E-value=1.3e+02 Score=28.50 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004340 618 FEFSEHHFRMAFQI--SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILAD 666 (760)
Q Consensus 618 ~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~ 666 (760)
..++...|..+... .-..+..|...|..+...|++.+|.++|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455555444432 33344455555555555556666655555555543
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.95 E-value=72 Score=38.09 Aligned_cols=107 Identities=8% Similarity=-0.031 Sum_probs=70.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-C--------------------
Q 004340 608 LGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA-D-------------------- 666 (760)
Q Consensus 608 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~-~-------------------- 666 (760)
+...+...|.++-|. +.+...|.++..-+.+|.++...|++++|..+|++|-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 455566667666443 344566777777777788888888888888887765321 0
Q ss_pred CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHH----HHHHHHHHHHHcC
Q 004340 667 KK--NPLPMYQKANILLSLEKFDEALEVLEELKEYA-PRESG----VYALMGKIYKRRN 718 (760)
Q Consensus 667 p~--~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~----~~~~la~~~~~~g 718 (760)
+. ....|...+.++...+-++-+++..+.|++.. +++.. +|..+=+.+...|
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00 11356778889999999999999999999854 44443 4555555544443
No 277
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=55.90 E-value=13 Score=35.53 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=36.1
Q ss_pred ccCcch--HHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCcchHHHHHH
Q 004340 95 AEIPNG--AAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLLWAAYEEL 141 (760)
Q Consensus 95 ~~~p~~--a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~~w~af~~L 141 (760)
.++|.+ ..=+|++|+++...++..+|-+++.+|++..|--...+-.+
T Consensus 6 ~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~ 54 (203)
T 3t5x_A 6 DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRM 54 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHH
Confidence 346654 55799999999999999999999999999988654444433
No 278
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=55.02 E-value=55 Score=35.16 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhccchhHHHHHHhhhhcCCCchhhHHHHHHHhhcCCH-------------HHHHHHhccCCCcchhHHH-
Q 004340 5 LTDCVQNSLRYFMYRNAIFLCERLCAEFPSEVNLQLLATCYLQNNQA-------------YAAYNILKGTQMALSRYLF- 70 (760)
Q Consensus 5 l~~~i~~~l~~~~~~~A~flaerl~a~~~~~~~~~llA~~~~~~~~~-------------~~a~~~l~~~~~~~~~yl~- 70 (760)
..++|+.||+++++..|+.+|-.+ +++..-.-.+-|++..-. ...|.++.+. .+.+-.-+
T Consensus 166 ~e~Av~~al~~~lwa~ALlLAs~~-----g~e~~~~V~~~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn-~~~~V~~l~ 239 (441)
T 3mzk_B 166 HDEALRLALSKRDYAIALLVGSLM-----GKDRWSEVIQKYLYEGFTAGPNDQKELAHFLLLIFQVFVGN-SKMAIKSFY 239 (441)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----CHHHHHHHHHHHHHCC------CTHHHHHHHHHHHHHTTTC-HHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHhc-----CHHHHHHHHHHHHHhhcccCCccccccccHHHHHHHHHcCC-HHHHHHHhc
Confidence 468999999999999999998433 222222223333332110 0112222221 11110000
Q ss_pred ---HHHHHhcCChhHHHHhhCCCC----CCCccCcchH-HHHHHHHHHHHhcCChhHHHHHHHHH
Q 004340 71 ---AVACYQMDLLSEAEAALSPVN----EPSAEIPNGA-AGHYLMGLIYRYTDRRKNAIHHYKMA 127 (760)
Q Consensus 71 ---a~c~~~l~~~~ea~~~l~~~~----~~~~~~p~~a-~~~~llg~i~~~~~~~~~A~~~~~~A 127 (760)
+.--..+.+|+|...++.... +....+|... .++.=||..-...|+...|--||.-|
T Consensus 240 ~~~~~~~~~l~~Wre~lA~IlsN~~~~~~~~~~~p~~~~~~l~~LGd~L~~~g~~~aAhiCYL~a 304 (441)
T 3mzk_B 240 TNNETSQWASENWKSIVAAVLINIPENNEDPLLIPPVVLEFLIEFGIFLTKKGLTAAASTLFIIG 304 (441)
T ss_dssp HCHHHHHHHHHSHHHHHHHHHHTSCCCSSCTTCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCCccccchHhHHHHHHHHHHhCCCCchhhcccccchHHHHHHHHHHHHHhCCCcchhHHhHhcc
Confidence 122347789999998776421 1122345443 37888999988999999999999765
No 279
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=52.78 E-value=70 Score=29.08 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcccccCCCC--------HHHH-HHHHHHHHHccCHHHHHHHHHHHHHH
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHKHYNT--------GWVL-SQVGKAYFEVVDYLEAERAFTLARRA 495 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~~p~~--------~~~l-~~la~~~~~~g~~~~A~~~~~~al~~ 495 (760)
+-..+..+..++..|+|-+|=++++.+-...+.. +.+. ...|..++..|+..-|...+.+++..
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455778889999999999999999876554433 3344 55566778899999999999999874
No 280
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=52.66 E-value=1.6e+02 Score=29.89 Aligned_cols=40 Identities=13% Similarity=-0.002 Sum_probs=30.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 004340 711 GKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIEKL 750 (760)
Q Consensus 711 a~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~~l 750 (760)
-...++.++|..|..+-++.+++.|....+...+..+...
T Consensus 214 M~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~c 253 (325)
T 3mv2_A 214 MSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKA 253 (325)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3456788999999999999999999877766655555443
No 281
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=50.98 E-value=1.9e+02 Score=32.68 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=12.8
Q ss_pred HHcCCHHHHHHHHHHH
Q 004340 681 LSLEKFDEALEVLEEL 696 (760)
Q Consensus 681 ~~~g~~~eA~~~l~~a 696 (760)
+..|+|+.|++.+++.
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 7788888888888774
No 282
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=48.96 E-value=1.5e+02 Score=30.23 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHhcccc
Q 004340 430 LGLLRILGEGYRMSCMYRCKDALDVYLKLPH 460 (760)
Q Consensus 430 ~~ll~~l~~a~~~~~~g~~~eAi~~l~~~~~ 460 (760)
..+...|..||.+...|++++|+..|+.++.
T Consensus 112 ~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 112 DVVNEKMNEGYKNFKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455678899999999999999999998643
No 283
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=48.80 E-value=38 Score=26.32 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 004340 708 ALMGKIYKRRNMHEKAMLHFGLALDLKPSATDVATI 743 (760)
Q Consensus 708 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~ 743 (760)
..+|..+...|++++|..+|-+|+...|.-.+...+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i 56 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQV 56 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 457777777888888888888888887776654433
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.15 E-value=1.1e+02 Score=27.75 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=27.9
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004340 587 GIRSYQSALRV--DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPH 634 (760)
Q Consensus 587 A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 634 (760)
+..+|..+... ....+..|...|..+...|++.+|.++|+.+++....
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 44445444442 3344556666666666666666666666666665433
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.40 E-value=2.9e+02 Score=31.22 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=21.3
Q ss_pred HHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCh
Q 004340 707 YALMGKIY--KRRNMHEKAMLHFGLALDLKPSA 737 (760)
Q Consensus 707 ~~~la~~~--~~~g~~~~A~~~~~~al~l~p~~ 737 (760)
+..+..++ ...|+++.|++.+++ +.+-|-+
T Consensus 539 Ll~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 539 LLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 33444444 788999999999988 6677766
No 286
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=42.80 E-value=51 Score=25.64 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=24.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Q 004340 470 SQVGKAYFEVVDYLEAERAFTLARRASPYSLEGM 503 (760)
Q Consensus 470 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 503 (760)
..+|..+...|++++|..+|-+|+...|.-.+.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 3567777777888888888888888777654433
No 287
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=42.28 E-value=1.6e+02 Score=31.77 Aligned_cols=89 Identities=12% Similarity=-0.018 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCC------------H-H---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C--------
Q 004340 581 LEDFENGIRSYQSALRVDARH------------Y-N---SWYGLGMVYLRQEKFEFSEHHFRMAFQISP--H-------- 634 (760)
Q Consensus 581 ~g~~e~A~~~~~~al~~~p~~------------~-~---a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~-------- 634 (760)
....++|...+.++....-.+ - . ....+-.+|++.++...+...++..-...+ .
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 445778888888888752111 1 1 123445788999999999888865544322 1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCC
Q 004340 635 SSVIMSYLGTAMHALKRSGEAIEMMEKAILA-DKKN 669 (760)
Q Consensus 635 ~~~~~~~la~~~~~~g~~~eAl~~l~~al~~-~p~~ 669 (760)
-...++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 1346788999999999999999999999988 6654
No 288
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=41.72 E-value=1.9e+02 Score=25.70 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=16.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 004340 542 NCYSLQKDHETALKNFQRAVQLNPRFA 568 (760)
Q Consensus 542 ~~~~~~g~~~~A~~~~~kal~~~p~~~ 568 (760)
.-+...|..++.++...+...-.+...
T Consensus 15 K~~ildG~v~qGveii~k~~~ssni~E 41 (172)
T 1wy6_A 15 KKFLLDGYIDEGVKIVLEITKSSTKSE 41 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCCccc
Confidence 344556777777777777766554433
No 289
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=39.30 E-value=34 Score=27.36 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=9.1
Q ss_pred HcCCHHHHHHHHHHHHH
Q 004340 580 ALEDFENGIRSYQSALR 596 (760)
Q Consensus 580 ~~g~~e~A~~~~~~al~ 596 (760)
..|++++|+.+|..+++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45555555555555443
No 290
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=38.87 E-value=3.2e+02 Score=27.67 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhccccc
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLKLPHK 461 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~~~~~ 461 (760)
+...|..||.+...|++++|+..|+.++..
T Consensus 102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 131 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGKFEEAVEKFRSILLS 131 (320)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445788999999999999999999986543
No 291
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=38.42 E-value=35 Score=27.21 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=9.2
Q ss_pred HcCCHHHHHHHHHHHHH
Q 004340 580 ALEDFENGIRSYQSALR 596 (760)
Q Consensus 580 ~~g~~e~A~~~~~~al~ 596 (760)
..|++++|+.+|..+++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45566666555555443
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.14 E-value=1.1e+02 Score=27.49 Aligned_cols=90 Identities=6% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004340 554 LKNFQRAVQL---------NPRFAYGHTLCGHEYVALEDFENGIRSYQSALR--VDARHYNSWYGLGMVYLRQEKFEFSE 622 (760)
Q Consensus 554 ~~~~~kal~~---------~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~A~ 622 (760)
..++++++.. ||.....|...+... +++..+|.-+.. +....+..|...|..+...|++.+|.
T Consensus 48 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 121 (152)
T 4a1g_A 48 ITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHAS 121 (152)
T ss_dssp HHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004340 623 HHFRMAFQISPHSSVIMSYLGTAMHAL 649 (760)
Q Consensus 623 ~~l~~al~~~p~~~~~~~~la~~~~~~ 649 (760)
.+|+.+++....-..-+...-..+...
T Consensus 122 ~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 148 (152)
T 4a1g_A 122 AVLQRGIQNQAEPREFLQQQYRLFQTR 148 (152)
T ss_dssp HHHHHHHHTTCBSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHHH
No 293
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.07 E-value=1.3e+02 Score=27.29 Aligned_cols=59 Identities=17% Similarity=-0.011 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---H-----HHH-HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 674 YQKANILLSLEKFDEALEVLEELKEYAPRE---S-----GVY-ALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 674 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~-----~~~-~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
+..+..++..|+|-+|-++++.+-...+.. . -+. ...|..+.+.|+..-|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445666777788888888888877665433 1 223 3344556778999999999999976
No 294
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=35.03 E-value=1.8e+02 Score=23.53 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhc
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLK 457 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~ 457 (760)
....+.+|...-..|+|++|+.+|..
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~ 40 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQE 40 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44556677777778888888877753
No 295
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=34.78 E-value=48 Score=35.89 Aligned_cols=57 Identities=23% Similarity=0.102 Sum_probs=42.4
Q ss_pred CChhHHHHhhCCCCCCC---ccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCcc
Q 004340 78 DLLSEAEAALSPVNEPS---AEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPLL 134 (760)
Q Consensus 78 ~~~~ea~~~l~~~~~~~---~~~p~~a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~~ 134 (760)
..+++|+..|....... ..-++..+++-||+++|..+++.++|+++..+++...+++
T Consensus 165 ~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~~~l~ 224 (460)
T 3snx_A 165 DDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKGYSLM 224 (460)
T ss_dssp HHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence 44678888883211111 2235678899999999999999999999999999765544
No 296
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=33.20 E-value=60 Score=26.62 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=15.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004340 675 QKANILLSLEKFDEALEVLEELKEYAPR 702 (760)
Q Consensus 675 ~la~~~~~~g~~~eA~~~l~~al~~~p~ 702 (760)
.+|..+...|+++.|+.+|-+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3555555556666666555555555443
No 297
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=32.47 E-value=1.5e+02 Score=26.84 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=65.1
Q ss_pred hhHHHHHHHhhcCCHHHHHHHhccC---C-CcchhHHHHHHHHhcCChh-HHHHhhCCCCCCCccCcchHHHHHHHHHHH
Q 004340 37 NLQLLATCYLQNNQAYAAYNILKGT---Q-MALSRYLFAVACYQMDLLS-EAEAALSPVNEPSAEIPNGAAGHYLMGLIY 111 (760)
Q Consensus 37 ~~~llA~~~~~~~~~~~a~~~l~~~---~-~~~~~yl~a~c~~~l~~~~-ea~~~l~~~~~~~~~~p~~a~~~~llg~i~ 111 (760)
..++=|.-.|...+|.....-|++. + ...-.|++|.++++...+. |.-..+. +.+.. -+--.+|+=-||
T Consensus 10 ~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIl--n~itl----kSde~yL~YWIy 83 (161)
T 2ynq_A 10 EAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVS--NNITL----KTDEQYMLYWIY 83 (161)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHH--HTCCT----TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHH--hhCCc----cCCHHHHHHHHH
Confidence 5677889999999999999999987 2 3388999999999998754 3333332 11111 111256666689
Q ss_pred HhcCChhHHHHHHHHHHhhCCcchHHHH
Q 004340 112 RYTDRRKNAIHHYKMALSIDPLLWAAYE 139 (760)
Q Consensus 112 ~~~~~~~~A~~~~~~AL~~np~~w~af~ 139 (760)
...|+.++|.+-=+ -|.=+.+.+-|+.
T Consensus 84 iGRg~~~eAlDiA~-~L~D~qLilyAl~ 110 (161)
T 2ynq_A 84 IGRSQSEEALELAR-TIEDRDLIVYALL 110 (161)
T ss_dssp HHHTCHHHHHHHHH-HHTCHHHHHHHHH
T ss_pred HcCCchHHHHHHHH-hcCcHHHHHHHHH
Confidence 99999999987533 2333444444443
No 298
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=31.85 E-value=0.21 Score=54.16 Aligned_cols=167 Identities=16% Similarity=0.108 Sum_probs=95.4
Q ss_pred HHHHHHhcCChHHHHHHHhcccccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHH
Q 004340 438 EGYRMSCMYRCKDALDVYLKLPHKHYNTGWVLSQVGKAYFEVVDYLEAERAFTLARRASPYSLEGMDIYSTVLYHLKEDM 517 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~~~~~~~p~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l~~~~ 517 (760)
-|.+++..|.|+.|.-+|..+..-. .+|.++..+|+|..|.+.-++|
T Consensus 150 VGDrcf~e~lYeAAKilys~isN~a--------kLAstLV~L~~yq~AVdaArKA------------------------- 196 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNVSNFG--------RLASTLVHLGEYQAAVDGARKA------------------------- 196 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGSCCCT--------TTSSSSSSCSGGGSSTTTTTTC-------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCccHH--------HHHHHHHHHHHHHHHHHHHHhc-------------------------
Confidence 3556667777777766666554322 3555666666666666554443
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004340 518 KLSYLAQELITTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVALEDFENGIRSYQSALRV 597 (760)
Q Consensus 518 ~a~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~~ 597 (760)
+++.+|-.........+++.-|..+--..+- .++.. -.+...|...|-+++-+..++.++.+
T Consensus 197 --------------ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL---~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 197 --------------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADEL---EELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp --------------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCC---SGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred --------------CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHH---HHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 3455666666666666666666555444432 22211 12334456677777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC------CCHHHHHHHHHHHHHcCChHHHH
Q 004340 598 DARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQI--SP------HSSVIMSYLGTAMHALKRSGEAI 656 (760)
Q Consensus 598 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--~p------~~~~~~~~la~~~~~~g~~~eAl 656 (760)
..-+...+..||.+|.+- +.++-.++++..... -| .....|..+..+|..-.+|+.|.
T Consensus 259 ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 666777777777776653 345555554422111 11 12334666667777777777654
No 299
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.99 E-value=3.1e+02 Score=25.02 Aligned_cols=170 Identities=12% Similarity=0.040 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004340 568 AYGHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLRQEKFEFSEHHFRMAFQISPHSSVIMSYLGTAMH 647 (760)
Q Consensus 568 ~~a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 647 (760)
..........+...+. ..++..+.+++. ++ +..........+...+. .++...+.+++ ...++.+.......+.
T Consensus 33 ~~vR~~A~~~L~~~~~-~~~~~~L~~~l~-~~-~~~vr~~a~~aL~~~~~-~~~~~~L~~~l--~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 33 YYVRRAAAYALGKIGD-ERAVEPLIKALK-DE-DAWVRRAAADALGQIGD-ERAVEPLIKAL--KDEDGWVRQSAAVALG 106 (211)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHHHHHHHTT-CS-CHHHHHHHHHHHHHHCC-GGGHHHHHHHT--TCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-ccHHHHHHHHHc-CC-CHHHHHHHHHHHHhhCC-HHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 3333333344444443 234444444443 22 34444444444444444 23444444443 2234555555555666
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 648 ALKRSGEAIEMMEKAILADKKNPLPMYQKANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHF 727 (760)
Q Consensus 648 ~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 727 (760)
..+.. +++..+.+++ ...++.+....+.++...|. .+++..+..++ ...++.+......++...+. .+++..+
T Consensus 107 ~~~~~-~~~~~L~~~l--~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l--~d~~~~vr~~a~~aL~~~~~-~~~~~~L 179 (211)
T 3ltm_A 107 QIGDE-RAVEPLIKAL--KDEDWFVRIAAAFALGEIGD-ERAVEPLIKAL--KDEDGWVRQSAADALGEIGG-ERVRAAM 179 (211)
T ss_dssp HHCCG-GGHHHHHHHT--TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHT--TCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HhCcH-HHHHHHHHHH--hCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHH--cCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 66653 3455555544 23455566666666666665 34555555554 22346666666666666666 5677777
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcC
Q 004340 728 GLALDLKPSATDVATIKAAIEKLH 751 (760)
Q Consensus 728 ~~al~l~p~~~~a~~~l~~l~~l~ 751 (760)
..+++ +++...-.....+|..++
T Consensus 180 ~~~l~-d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 180 EKLAE-TGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHH-HCCHHHHHHHHHHHHC--
T ss_pred HHHHh-CCCHHHHHHHHHHHHhcC
Confidence 77765 333332223333444443
No 300
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=30.67 E-value=90 Score=29.49 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Q 004340 467 WVLSQVGKAYFEVVDYLEAERAFTLARRASPYS 499 (760)
Q Consensus 467 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 499 (760)
...+.+|+.++..++|.+|.+.|..|++..|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 457889999999999999999999999998864
No 301
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=30.22 E-value=3.1e+02 Score=28.27 Aligned_cols=66 Identities=23% Similarity=0.095 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004340 600 RHYNSWYGLGMVYLRQEK--FEFSEHHFRMAFQI-----SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAILA 665 (760)
Q Consensus 600 ~~~~a~~~la~~~~~~g~--~~~A~~~l~~al~~-----~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~ 665 (760)
..+.++.+||.+-...-- ...++..|.+++.. .......|..+|..+++.+++.+|++.+-++-..
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 567788888877654332 23378888888865 3345666788888999999999999988887654
No 302
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=29.54 E-value=2.7e+02 Score=28.77 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=32.6
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 553 ALKNFQRAVQL-----NPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (760)
Q Consensus 553 A~~~~~kal~~-----~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~ 596 (760)
++.+|.+++.. .....+.|..+|-.+++.+++.+|+..+-.+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 66666666653 445677788888888888888888888877654
No 303
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=29.32 E-value=4.6e+02 Score=26.52 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=29.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004340 711 GKIYKRRNMHEKAMLHFGLALDLKPSATDVATIKAAIE 748 (760)
Q Consensus 711 a~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~l~ 748 (760)
-...++.++|..|..+-++.+++.|+...+...+..+.
T Consensus 205 M~~a~K~KNy~tAa~fArrLLel~p~~~~~~qArkil~ 242 (320)
T 3mkr_B 205 LNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILS 242 (320)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34567889999999999999999998776555544443
No 304
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=29.16 E-value=2.2e+02 Score=22.68 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhc
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLK 457 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~ 457 (760)
....+.+|...-..|+|++|+.+|..
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~ 41 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQE 41 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455566666666777777666653
No 305
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=28.88 E-value=2.2e+02 Score=22.55 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHh
Q 004340 429 LLGLLRILGEGYRMSCMYRCKDALDVYL 456 (760)
Q Consensus 429 l~~ll~~l~~a~~~~~~g~~~eAi~~l~ 456 (760)
+......+.+|...-..|+|++|+.+|.
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~ 43 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYK 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3345555666776777777777777665
No 306
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=28.66 E-value=3.6e+02 Score=33.14 Aligned_cols=45 Identities=9% Similarity=0.007 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 570 GHTLCGHEYVALEDFENGIRSYQSALRVDARHYNSWYGLGMVYLR 614 (760)
Q Consensus 570 a~~~la~~~~~~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~~~ 614 (760)
+...+-...+..-+.+++.++|+++++..|++..++..+...+..
T Consensus 1109 ~~rd~~~~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~ 1153 (1354)
T 3lxu_X 1109 SFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIES 1153 (1354)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhh
Confidence 333333334444456778888888888888888877777665553
No 307
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=27.98 E-value=73 Score=34.77 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=41.0
Q ss_pred CChhHHHHhhCCCC-CCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCc
Q 004340 78 DLLSEAEAALSPVN-EPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSIDPL 133 (760)
Q Consensus 78 ~~~~ea~~~l~~~~-~~~~~~p~~a~~~~llg~i~~~~~~~~~A~~~~~~AL~~np~ 133 (760)
..+++|+..|-... .....-++..+++-||+++|..+++.++|+++.++++...++
T Consensus 179 ~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~~l 235 (495)
T 3lew_A 179 NDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKDNY 235 (495)
T ss_dssp HHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 44577887773211 111223566889999999999999999999999999976544
No 308
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=27.41 E-value=2.7e+02 Score=23.16 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=26.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004340 676 KANILLSLEKFDEALEVLEELKEYAPRESGVYALMGKIYKRRNMHEKAMLHF 727 (760)
Q Consensus 676 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 727 (760)
....+...|+|++|....+..- .+++--.++.|-.+.|-.+++...+
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 4445666666666665554321 3444455566666666666666555
No 309
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.70 E-value=70 Score=26.07 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=8.3
Q ss_pred HcCCHHHHHHHHHHHH
Q 004340 580 ALEDFENGIRSYQSAL 595 (760)
Q Consensus 580 ~~g~~e~A~~~~~~al 595 (760)
..|+|++|+.+|..++
T Consensus 27 ~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 27 AESRYQQALVCYQEGI 42 (93)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 3455555555555443
No 310
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=26.36 E-value=64 Score=26.79 Aligned_cols=44 Identities=14% Similarity=-0.038 Sum_probs=36.0
Q ss_pred HHHhhccchhHHHHHHhhhhcCCCchhhHHHHHHHhhcCCHHHHHHHh
Q 004340 11 NSLRYFMYRNAIFLCERLCAEFPSEVNLQLLATCYLQNNQAYAAYNIL 58 (760)
Q Consensus 11 ~~l~~~~~~~A~flaerl~a~~~~~~~~~llA~~~~~~~~~~~a~~~l 58 (760)
..+|++.|+.|.-+.|-++ .++=.-|+|.|=.+.|....+..-|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 4568899999999999888 4455569999999999988876555
No 311
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=25.73 E-value=2.4e+02 Score=22.15 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHh
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYL 456 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~ 456 (760)
....+.+|...-..|+|++|+.+|.
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~ 35 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYK 35 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3444555555556666666665554
No 312
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.43 E-value=3.8e+02 Score=28.26 Aligned_cols=44 Identities=5% Similarity=0.129 Sum_probs=32.1
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 553 ALKNFQRAVQL-----NPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (760)
Q Consensus 553 A~~~~~kal~~-----~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~ 596 (760)
++.+|.+|+.. .....+.|..+|-.+++.+++.+|+..+..+-.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 45566666653 445567788888888888888888888887755
No 313
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=25.34 E-value=77 Score=25.99 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=16.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCC
Q 004340 471 QVGKAYFEVVDYLEAERAFTLARRASPY 498 (760)
Q Consensus 471 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 498 (760)
.+|..+...|+++.|+.+|-+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3555566666666666666666666554
No 314
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=25.01 E-value=4e+02 Score=28.06 Aligned_cols=64 Identities=9% Similarity=-0.068 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004340 600 RHYNSWYGLGMVYLRQEKF--EFSEHHFRMAFQI-----SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAI 663 (760)
Q Consensus 600 ~~~~a~~~la~~~~~~g~~--~~A~~~l~~al~~-----~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al 663 (760)
..+.++-+||.+-...--. ..++..|.+++.. ...+...|..+|-.+++.+++.+|+..+-.+-
T Consensus 275 rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 275 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp TCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 3455555665554432111 1355566665543 22334445556666666666666666655543
No 315
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=24.52 E-value=5.6e+02 Score=27.01 Aligned_cols=65 Identities=9% Similarity=-0.071 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004340 600 RHYNSWYGLGMVYLRQEK--FEFSEHHFRMAFQI-----SPHSSVIMSYLGTAMHALKRSGEAIEMMEKAIL 664 (760)
Q Consensus 600 ~~~~a~~~la~~~~~~g~--~~~A~~~l~~al~~-----~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~ 664 (760)
..+.++.+||.+-..... ...++..|++++.. .......|..+|-.+++.+++.+|+..+-++-.
T Consensus 260 ~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 456777777776544322 22366677777664 233455566677777777777777777776654
No 316
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.90 E-value=1e+02 Score=25.04 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004340 672 PMYQKANILLSLEKFDEALEVLEELK 697 (760)
Q Consensus 672 ~~~~la~~~~~~g~~~eA~~~l~~al 697 (760)
.+-..+..+...|+|++|+++.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34456777777788888877777653
No 317
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.86 E-value=61 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 707 YALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 707 ~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
...+|+=|...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45677777788888888888877765
No 318
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.85 E-value=1.2e+02 Score=24.71 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=9.4
Q ss_pred HHHHHHhcCChHHHHHHHh
Q 004340 438 EGYRMSCMYRCKDALDVYL 456 (760)
Q Consensus 438 ~a~~~~~~g~~~eAi~~l~ 456 (760)
++..++..|+|++||++..
T Consensus 21 rAe~ll~~gkydeAIech~ 39 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHR 39 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 4444455555555555443
No 319
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.50 E-value=61 Score=25.53 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=16.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 004340 470 SQVGKAYFEVVDYLEAERAFTLARR 494 (760)
Q Consensus 470 ~~la~~~~~~g~~~~A~~~~~~al~ 494 (760)
..+|+-|...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3456666667777777777776665
No 320
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=23.49 E-value=3.7e+02 Score=28.28 Aligned_cols=44 Identities=5% Similarity=0.129 Sum_probs=32.2
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004340 553 ALKNFQRAVQL-----NPRFAYGHTLCGHEYVALEDFENGIRSYQSALR 596 (760)
Q Consensus 553 A~~~~~kal~~-----~p~~~~a~~~la~~~~~~g~~e~A~~~~~~al~ 596 (760)
++.+|.+++.. ...+.+-|..+|-.+++.+++.+|+..+-.+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 55666666543 445677788888888888888888888777654
No 321
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.32 E-value=79 Score=27.03 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=8.5
Q ss_pred HcCCHHHHHHHHHHHH
Q 004340 580 ALEDFENGIRSYQSAL 595 (760)
Q Consensus 580 ~~g~~e~A~~~~~~al 595 (760)
..|+|++|+.+|..++
T Consensus 30 ~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 3455555555555544
No 322
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.32 E-value=2.3e+02 Score=29.72 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---C--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004340 673 MYQKANILLSLEKFDEALEVLEELKEY---A--PR---ESGVYALMGKIYKRRNMHEKAMLHFGLALD 732 (760)
Q Consensus 673 ~~~la~~~~~~g~~~eA~~~l~~al~~---~--p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 732 (760)
...++..|...|+.++|..+++++-.. . .+ ....|...+..|...+++..+...+-.++.
T Consensus 130 ~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 130 DSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344566666666666666666666432 1 11 123445556666666776666655555543
No 323
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=22.46 E-value=5.5e+02 Score=25.09 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHH
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLN---PR-FAYGHTLCGHEYV 579 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~---p~-~~~a~~~la~~~~ 579 (760)
+-+..++.+..+.++|++.+.+.+++...+ +. ..+-...+..+|-
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyK 77 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYK 77 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 344556777777788888888888887765 32 3344455555543
No 324
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=22.37 E-value=1.2e+03 Score=28.79 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYGHTLCGHEYVA 580 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~a~~~la~~~~~ 580 (760)
+++..+-..+...-+.+++.++|++.++..|++..++..+.+.+..
T Consensus 1108 e~~rd~~~~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~ 1153 (1354)
T 3lxu_X 1108 ESFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIES 1153 (1354)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhh
Confidence 4455554455555677889999999999999999998877776553
No 325
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=22.03 E-value=5.3e+02 Score=24.75 Aligned_cols=164 Identities=8% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004340 535 QSWCAMGNCYSLQKDHETALKNFQRAVQLNPR-FAYGHTLCGHEYVA-LEDFENGIRSYQSALRVDARHYNSWYGLGMVY 612 (760)
Q Consensus 535 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~p~-~~~a~~~la~~~~~-~g~~e~A~~~~~~al~~~p~~~~a~~~la~~~ 612 (760)
+-+..++.+..+.++|++.+.+.+++...++. ..+-...+..+|-. .|....+...+...-+...........-..--
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i~~ 85 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIRE 85 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHHHH
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHcCCh----------HHHHHHHHHHH-----HhC
Q 004340 613 LRQEKFEFSEHHFRMAFQISPHS-----------SVIMSYLGTAMHALKRS----------GEAIEMMEKAI-----LAD 666 (760)
Q Consensus 613 ~~~g~~~~A~~~l~~al~~~p~~-----------~~~~~~la~~~~~~g~~----------~eAl~~l~~al-----~~~ 666 (760)
++..=-.+-...+...+.+-... ...+-..|..|...-.+ +.|...|+.|+ .+.
T Consensus 86 yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~ 165 (234)
T 2br9_A 86 YRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELP 165 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCC
Q ss_pred CCCh---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 004340 667 KKNP---LPMYQKANILLS-LEKFDEALEVLEELKE 698 (760)
Q Consensus 667 p~~~---~~~~~la~~~~~-~g~~~eA~~~l~~al~ 698 (760)
|.+| ....+.+..|+. +++.++|....++++.
T Consensus 166 pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 166 PTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 326
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=21.98 E-value=2.9e+02 Score=21.66 Aligned_cols=26 Identities=8% Similarity=0.249 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhc
Q 004340 432 LLRILGEGYRMSCMYRCKDALDVYLK 457 (760)
Q Consensus 432 ll~~l~~a~~~~~~g~~~eAi~~l~~ 457 (760)
....+.+|...-..|+|++|+.+|..
T Consensus 13 A~~l~~~Av~~D~~g~y~eAl~~Y~~ 38 (85)
T 2v6x_A 13 GIELVQKAIDLDTATQYEEAYTAYYN 38 (85)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455566666667777777776653
No 327
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.16 E-value=4.4e+02 Score=25.18 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004340 702 RESGVYALMGKIYKRRNMHEKAMLHFGLALDLK 734 (760)
Q Consensus 702 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 734 (760)
..+..|...|..+...|++.+|.+.|+..++..
T Consensus 148 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 148 ESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344455555555555555555555555555543
No 328
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.03 E-value=3.6e+02 Score=25.80 Aligned_cols=30 Identities=27% Similarity=0.161 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004340 670 PLPMYQKANILLSLEKFDEALEVLEELKEY 699 (760)
Q Consensus 670 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 699 (760)
+..|...|..+...|++.+|.++|+..++.
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 334444455555555555555555555544
No 329
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=20.97 E-value=3.8e+02 Score=22.65 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhc
Q 004340 431 GLLRILGEGYRMSCMYRCKDALDVYLK 457 (760)
Q Consensus 431 ~ll~~l~~a~~~~~~g~~~eAi~~l~~ 457 (760)
.....+.+|...-..|+|++|+.+|..
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~ 43 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQH 43 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 344555667777777788888777753
No 330
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=20.76 E-value=6e+02 Score=24.84 Aligned_cols=29 Identities=7% Similarity=-0.034 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 004340 536 SWCAMGNCYSLQKDHETALKNFQRAVQLN 564 (760)
Q Consensus 536 ~~~~la~~~~~~g~~~~A~~~~~kal~~~ 564 (760)
-+..++.+..+.++|++.+.+.+++...+
T Consensus 10 ~~v~~AkLaeqaeRyddm~~~mk~v~~~~ 38 (260)
T 1o9d_A 10 ENVYMAKLAEQAERYEEMVEFMEKVSNSL 38 (260)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC
Confidence 34455666666677777777777776655
No 331
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=20.73 E-value=90 Score=34.24 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=39.4
Q ss_pred CChhHHHHhhCCCC-CCCccCcchHHHHHHHHHHHHhcCChhHHHHHHHHHHhhC
Q 004340 78 DLLSEAEAALSPVN-EPSAEIPNGAAGHYLMGLIYRYTDRRKNAIHHYKMALSID 131 (760)
Q Consensus 78 ~~~~ea~~~l~~~~-~~~~~~p~~a~~~~llg~i~~~~~~~~~A~~~~~~AL~~n 131 (760)
..+++|+..|-... .....-++..+++-||+++|..+++.++|+++.++.+...
T Consensus 158 ~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~g 212 (517)
T 3qnk_A 158 EDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKLG 212 (517)
T ss_dssp HHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44567777774211 1111234567899999999999999999999999998754
Done!