Your job contains 1 sequence.
>004342
MNISEAPEANGSADVHVDPCVMDPQDIALISNNGPAAVSFSSSPCPDGTETSRNPRIDDT
NSKNAGLEDVASVSAASQSDVSRAESRMRKKQEEQKYQGRIMMQQYPSAQQGFQYQVQGV
QGQAVSLGMNNAHNGMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYP
SFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVST
GEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGA
LADPSSKKEPIVAAYMGDQNLQSSLNGGPSISNPRKVGMPVGGYYGGLPGMGVMGQFPTS
PIASPVLPSSPVGSTSQLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSF
LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL
MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ
LVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQR
VLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQ
MSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKC
NEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLYGEGA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004342
(760 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 1560 3.4e-182 2
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 1247 3.8e-144 2
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 1262 1.3e-130 2
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 1259 1.3e-130 2
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 1267 4.0e-129 1
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 1141 9.1e-116 1
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 1025 1.5e-106 2
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 1024 1.5e-106 2
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 1024 1.9e-106 2
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 1024 1.9e-106 2
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 1020 2.4e-106 2
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 1020 2.4e-106 2
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 994 1.3e-105 3
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 1013 2.2e-105 2
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 1012 3.5e-105 2
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 1011 4.5e-105 2
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 979 1.2e-104 3
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 968 1.7e-103 3
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 972 1.2e-102 2
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 974 3.6e-101 2
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 974 3.6e-101 2
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 973 4.6e-101 2
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 973 4.6e-101 2
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 973 4.6e-101 2
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 978 5.9e-101 2
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 973 1.2e-100 2
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 966 2.5e-100 2
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 963 5.3e-100 2
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 963 5.3e-100 2
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 962 6.7e-100 2
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 962 6.7e-100 2
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 962 6.7e-100 2
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 962 6.7e-100 2
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 962 6.7e-100 2
WB|WBGene00004245 - symbol:puf-9 species:6239 "Caenorhabd... 862 5.6e-90 2
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 866 1.3e-86 1
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 752 1.4e-78 2
CGD|CAL0000998 - symbol:PUF3 species:5476 "Candida albica... 767 1.7e-78 2
ASPGD|ASPL0000000865 - symbol:AN6587 species:162425 "Emer... 759 1.5e-77 2
WB|WBGene00004244 - symbol:puf-8 species:6239 "Caenorhabd... 693 2.7e-68 1
ZFIN|ZDB-GENE-081031-76 - symbol:pum2 "pumilio homolog 2 ... 658 3.6e-67 2
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 597 2.9e-60 2
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 558 2.9e-55 2
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 531 1.6e-53 2
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 540 4.4e-52 1
GENEDB_PFALCIPARUM|PFD0825c - symbol:PFD0825c "RNA-bindin... 500 7.7e-48 1
UNIPROTKB|Q8I1R7 - symbol:PFD0825c "RNA-binding protein o... 500 7.7e-48 1
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 487 2.7e-46 1
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 487 2.7e-46 1
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 491 4.1e-46 2
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 474 6.2e-44 1
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 426 2.1e-39 1
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 453 2.3e-39 2
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 430 1.5e-37 1
UNIPROTKB|H0YDC5 - symbol:PUM1 "Pumilio homolog 1" specie... 396 4.2e-36 1
POMBASE|SPCC1682.08c - symbol:SPCC1682.08c "RNA-binding p... 392 1.4e-33 2
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 387 1.6e-33 1
POMBASE|SPAC4G9.05 - symbol:mpf1 "meiotic PUF family prot... 378 2.6e-32 1
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 368 1.4e-31 1
WB|WBGene00004239 - symbol:puf-3 species:6239 "Caenorhabd... 341 1.6e-28 1
UNIPROTKB|Q9U2G4 - symbol:puf-3 "Protein PUF-3" species:6... 341 1.6e-28 1
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 346 4.5e-28 1
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 332 1.8e-26 1
WB|WBGene00022257 - symbol:puf-11 species:6239 "Caenorhab... 322 3.1e-26 1
WB|WBGene00004243 - symbol:puf-7 species:6239 "Caenorhabd... 261 2.3e-19 1
WB|WBGene00004242 - symbol:puf-6 species:6239 "Caenorhabd... 260 2.9e-19 1
CGD|CAL0004399 - symbol:orf19.5381 species:5476 "Candida ... 247 2.8e-17 3
WB|WBGene00001402 - symbol:fbf-2 species:6239 "Caenorhabd... 239 1.2e-16 1
WB|WBGene00001401 - symbol:fbf-1 species:6239 "Caenorhabd... 230 1.1e-15 1
UNIPROTKB|Q9N5M6 - symbol:fbf-1 "Fem-3 mRNA-binding facto... 230 1.1e-15 1
WB|WBGene00004241 - symbol:puf-5 species:6239 "Caenorhabd... 224 4.1e-15 1
POMBASE|SPBP35G2.14 - symbol:SPBP35G2.14 "RNA-binding pro... 226 5.3e-15 3
WB|WBGene00004240 - symbol:puf-4 species:6239 "Caenorhabd... 175 1.0e-14 2
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 209 1.3e-13 1
TAIR|locus:2168529 - symbol:PUM16 "pumilio 16" species:37... 202 2.2e-13 1
TAIR|locus:2167771 - symbol:PUM13 "pumilio 13" species:37... 205 4.5e-13 1
POMBASE|SPBC56F2.08c - symbol:SPBC56F2.08c "RNA-binding p... 194 1.1e-11 1
TAIR|locus:2167786 - symbol:PUM14 "pumilio 14" species:37... 194 4.7e-11 3
ASPGD|ASPL0000066087 - symbol:AN7474 species:162425 "Emer... 183 2.3e-10 2
ZFIN|ZDB-GENE-030131-9808 - symbol:si:ch211-241o7.5 "si:c... 172 2.3e-09 1
UNIPROTKB|H0YDQ6 - symbol:PUM1 "Pumilio homolog 1" specie... 147 3.0e-09 1
TAIR|locus:2144711 - symbol:PUM21 "pumilio 21" species:37... 160 3.4e-09 2
SGD|S000003851 - symbol:JSN1 "Member of the Puf family of... 173 3.9e-08 2
TAIR|locus:2164165 - symbol:PUM18 "pumilio 18" species:37... 153 8.1e-08 1
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 153 8.1e-08 1
CGD|CAL0000283 - symbol:orf19.4262 species:5476 "Candida ... 153 1.9e-07 1
SGD|S000006246 - symbol:PUF2 "Member of the PUF protein f... 159 7.3e-07 2
DICTYBASE|DDB_G0288551 - symbol:DDB_G0288551 "pumilio RNA... 145 2.3e-05 2
SGD|S000002904 - symbol:PUF6 "Pumilio-homology domain pro... 135 2.7e-05 1
RGD|1564753 - symbol:LOC499339 "hypothetical protein LOC4... 134 3.4e-05 1
CGD|CAL0005913 - symbol:orf19.3547 species:5476 "Candida ... 133 4.6e-05 1
TAIR|locus:2086760 - symbol:PUM24 "pumilio 24" species:37... 132 5.6e-05 1
MGI|MGI:106253 - symbol:D19Bwg1357e "DNA segment, Chr 19,... 140 6.8e-05 2
UNIPROTKB|G4MRT4 - symbol:MGG_13803 "Uncharacterized prot... 127 0.00023 1
UNIPROTKB|Q15397 - symbol:KIAA0020 "Pumilio domain-contai... 132 0.00024 2
UNIPROTKB|E1C1R5 - symbol:KIAA0020 "Uncharacterized prote... 126 0.00025 1
UNIPROTKB|F1SJG9 - symbol:LOC100152831 "Uncharacterized p... 135 0.00029 2
TAIR|locus:2035312 - symbol:PUM22 "pumilio 22" species:37... 119 0.00059 1
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 1560 (554.2 bits), Expect = 3.4e-182, Sum P(2) = 3.4e-182
Identities = 315/495 (63%), Positives = 374/495 (75%)
Query: 268 VDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQN-LQSSLN 326
VDP +QYFQ DAY Q SS D +K+ YM + L S L+
Sbjct: 471 VDPFQLQYFQQAQVDAYAPPFQ----SS------TDSFGQKDQQAVGYMANHEPLNSPLS 520
Query: 327 GGPSISNPRKXXXXXXXXXXXXXXXXXXXQFPTSPIASPVLPSSPVGST-SQLGLRHEMR 385
G + +PR Q+P SP+ASPV+PSSPVG S G R E R
Sbjct: 521 PGYGLQSPRHMGNYFAVPPGVRVMP----QYPGSPLASPVMPSSPVGGMMSHFGRRSETR 576
Query: 386 L-PQGLNRNTGIY-SGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVE 443
QG +RNTGIY GWQG R +D K+HSFL+ELKS NA+K ELSDIAGR+VE
Sbjct: 577 YHQQGPSRNTGIYPGGWQGNRG-GASSIVDDLKRHSFLDELKSPNARKLELSDIAGRVVE 635
Query: 444 FSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRK 503
FSVDQHGSRFIQQKLEHCS EEK SVF EVLP ASKLMTDVFGNYVIQKF EHG+P QR+
Sbjct: 636 FSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQRE 695
Query: 504 ELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 563
EL ++L GQ++ LSLQMYGCRVIQKALEVI++ QK++L+ ELDG+V++CVRDQNGNHVIQ
Sbjct: 696 ELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNHVIQ 755
Query: 564 KCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAF 623
KCIE +PA +I F+I+AFRGQVATLSTHPYGCRVIQR+LEHCSD+++ CI+DEILESAF
Sbjct: 756 KCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILESAF 815
Query: 624 ALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAER 683
ALA DQYGNYVTQHVLERGK ER QI+ KL G +VQMSQHKYASNVVEKCLE+ D+ ER
Sbjct: 816 ALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADSTER 875
Query: 684 ELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYT 743
E LIEEI+G+SEE+++LL MMKDQ+ANYVVQK+LE ++ RE L+ R+++H +L+KYT
Sbjct: 876 EFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSLRKYT 935
Query: 744 YGKHIVARFEQLYGE 758
YGKHIVARFEQL+GE
Sbjct: 936 YGKHIVARFEQLFGE 950
Score = 268 (99.4 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 56/186 (30%), Positives = 100/186 (53%)
Query: 432 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS-VFKEVLPHASKLMTDVFGNYVI 490
F ++ G++ S +G R IQ+ LEHCS +E+ + E+L A L D +GNYV
Sbjct: 768 FVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILESAFALAHDQYGNYVT 827
Query: 491 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----- 545
Q E G PD+R+++ EKL G V+ +S Y V++K LE + ++ L+ E+
Sbjct: 828 QHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADSTEREFLIEEIMGKSE 887
Query: 546 -DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH 604
D H++ ++DQ N+V+QK +E ++ E ++ + + +L + YG ++ R +
Sbjct: 888 EDNHLLAMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSLRKYTYGKHIVARFEQL 947
Query: 605 CSDEQQ 610
+E +
Sbjct: 948 FGEESE 953
Score = 230 (86.0 bits), Expect = 3.4e-182, Sum P(2) = 3.4e-182
Identities = 84/289 (29%), Positives = 125/289 (43%)
Query: 49 TETSRNPRIDDTNSKNAGLEXXXXXXXXXXXXXXRAESRMRKKQEEQKYQGRIMMQQYPS 108
+++ N + + N++ A E A SRMR+ QE+Q+ QGR M QY
Sbjct: 274 SQSFTNAQTERLNARQASHEDNNLSVFGASPPSSVA-SRMRRNQEDQQSQGRRMPPQYTP 332
Query: 109 AXXXXXXXXXXXXXXXXSLGMNNAHNGMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASA 168
+ G + + K + G S+F++ P +P PP+Y S
Sbjct: 333 SSYQVQASSPQQMSYPRIGGTQDMMQSLPKIATGE-VHSTFQS-PHGLAP---PPMYTST 387
Query: 169 GTYMPSGNPFY-PSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPS-QGPVPMPFDAT 226
YM S +PFY +FQ SG ++ QYN GGY S + P +++GYPS + VPMP+D +
Sbjct: 388 AAYMTSLSPFYHQNFQSSG--MFVPQYNYGGYPPASGIVPQYMSGYPSHEATVPMPYDIS 445
Query: 227 SGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFGDAYNA 286
S SS + +P + S+ G + S VDP +QYFQ DAY
Sbjct: 446 STSS------GYNNPRLLPGVSSS---------GQNIPS-LVDPFQLQYFQQAQVDAYAP 489
Query: 287 SVQHRLASSGVNGALA-DPSSKKEPIVAAYMGDQNLQSSLNGGPSISNP 334
Q S G A + EP+ + LQS + G + P
Sbjct: 490 PFQSSTDSFGQKDQQAVGYMANHEPLNSPLSPGYGLQSPRHMGNYFAVP 538
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 1247 (444.0 bits), Expect = 3.8e-144, Sum P(2) = 3.8e-144
Identities = 239/358 (66%), Positives = 287/358 (80%)
Query: 397 YSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQ 456
Y GWQ Q + EG + +FLEELKS ++F+LSDI G IVEFS DQHGSRFIQQ
Sbjct: 496 YPGWQPQGSLEGAN---GPRLCNFLEELKSGKGRRFDLSDITGHIVEFSADQHGSRFIQQ 552
Query: 457 KLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPL 516
KLE+C EEK +VF+E+LPHA KLMTDVFGNYVIQKFFE+G+ QRKELA++L+GQ++PL
Sbjct: 553 KLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPL 612
Query: 517 SLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF 576
SLQMYGCRVIQKAL+VIE Q+ +L ELDG VMRCVRDQNGNHVIQKCIE +PA+K+ F
Sbjct: 613 SLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIENIPADKVGF 672
Query: 577 IISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQ 636
++ AFRGQV++LS HPYGCRVIQR+LE CS + Q + I +EILES L++DQYGNYVTQ
Sbjct: 673 MLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQ 732
Query: 637 HVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEE 696
HVLE+G S ER +I KL+G IVQ+S HK+ASNV+EKCLEYG ER+L+I+EI G E
Sbjct: 733 HVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDES 792
Query: 697 NDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQ 754
++LL+MMKDQY NYVVQKI E C R TL SR+R+H ALKKYTYGKHIV+R EQ
Sbjct: 793 YNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALKKYTYGKHIVSRLEQ 850
Score = 236 (88.1 bits), Expect = 5.0e-30, Sum P(2) = 5.0e-30
Identities = 61/219 (27%), Positives = 110/219 (50%)
Query: 404 RTFEGQ--RTFEDSKKHSFLEE-LKSSNAQK--FELSDIAGRIVEFSVDQHGSRFIQQKL 458
R +GQ R D + +++ +++ A K F L G++ S+ +G R IQ+ L
Sbjct: 639 RELDGQVMRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLL 698
Query: 459 EHCSAEEKVS-VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLS 517
E CS + + + +E+L L D +GNYV Q E G+ ++R+ + KL G ++ LS
Sbjct: 699 ERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLS 758
Query: 518 LQMYGCRVIQKALEVIELHQKSQLVLELDG------HVMRCVRDQNGNHVIQKCIECVPA 571
L + VI+K LE ++ ++ E+ G ++ ++DQ GN+V+QK E A
Sbjct: 759 LHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTA 818
Query: 572 EKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQ 610
++ + S R + L + YG ++ R+ + +E Q
Sbjct: 819 DQRLTLFSRVRMHASALKKYTYGKHIVSRLEQPSIEENQ 857
Score = 183 (69.5 bits), Expect = 3.8e-144, Sum P(2) = 3.8e-144
Identities = 60/160 (37%), Positives = 77/160 (48%)
Query: 126 SLGMNNAHNGMDKNSYGHG-KFSSFEAQPSMNSPGLTPPL-YASAGT-YMPSGNPFYPSF 182
S G+N+A G + YG KFS + QP + S G TPPL Y + T YM S Y
Sbjct: 275 SHGVNDAVIGAGQFHYGQPYKFSG-DGQPVLQSSGFTPPLLYTATQTAYMTSPAHVYNMQ 333
Query: 183 QPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGE 242
P+ VY QY G Y N + P F+ GYPS G VP+ F + + S G
Sbjct: 334 SPA---VYSPQYGYGPYT-N--MIPQFMPGYPSHGSVPV----VVSPDFIPQLSGPSAGS 383
Query: 243 GIPHIGSTQH-QKFYGHQGLMLQSPFVDPLHMQYFQHPFG 281
+ H G Q+ +K Y G Q F DP++MQY Q FG
Sbjct: 384 -VVHGGEMQYAEKLYVPPG---QPSFPDPMYMQYCQQSFG 419
Score = 44 (20.5 bits), Expect = 1.8e-129, Sum P(2) = 1.8e-129
Identities = 18/58 (31%), Positives = 22/58 (37%)
Query: 130 NNAHNGMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQPSGA 187
N A GM N YG Q G PPL Y+ + YP +QP G+
Sbjct: 453 NMARPGMGVNYYGIQPNMGIMVQYLPTHLG--PPLSPGHVPYVEA----YPGWQPQGS 504
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 1262 (449.3 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
Identities = 263/464 (56%), Positives = 321/464 (69%)
Query: 301 LADPSSKKEPIV-AAYMGDQNLQSSLNGGPSISN--PRKXXXXXXXXXXXXXXXXXXXQF 357
L DPS + + ++YM LQ + G P K +
Sbjct: 496 LNDPSMDRNFMGGSSYMDMLELQRAYLGAQKSQYGVPYKSGSPNSHSYYGSPTFGSNMSY 555
Query: 358 PTSPIASPVLPSSPVGSTSQLGLRHE--MRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDS 415
P SP+A +P+S + S + R E MR P RN YSG ++ +F++
Sbjct: 556 PGSPLAHHGMPNSLMSPYSPMR-RDEVNMRFPSA-TRN---YSGGL-MGSWHMDASFDEG 609
Query: 416 KKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLP 475
S LEE KS+ + FELS+IAG +VEFS DQ+GSRFIQQKLE + +EK V++E++P
Sbjct: 610 FGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMP 669
Query: 476 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL 535
A LMTDVFGNYVIQKFFEHG P QR+ELAEKL VLPLSLQMYGCRVIQKA+EV++L
Sbjct: 670 QALVLMTDVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDL 729
Query: 536 HQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGC 595
QK ++V ELDGHVMRCVRDQNGNHV+QKCIECVP E IEFIIS F G V TLSTHPYGC
Sbjct: 730 DQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGC 789
Query: 596 RVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLA 655
RVIQRVLEHC D +++EIL + LAQDQYGNYV QHVLE GK ERT I+ +LA
Sbjct: 790 RVIQRVLEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELA 849
Query: 656 GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQK 715
GKIVQMSQ K+ASNVVEKCL +G ERELL+ E+LG ++EN+ L MMKDQ+ANYVVQK
Sbjct: 850 GKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQK 909
Query: 716 ILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLYGEG 759
+LE C+++ RE +++RI+VH ALKKYTYGKH+VAR E+L G
Sbjct: 910 VLETCDDQQRELILTRIKVHLTALKKYTYGKHVVARIEKLVAAG 953
Score = 290 (107.1 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
Identities = 74/270 (27%), Positives = 141/270 (52%)
Query: 430 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 488
Q+ EL++ + ++ S+ +G R IQ+ +E ++K+ + KE+ H + + D GN+
Sbjct: 695 QRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNH 754
Query: 489 VIQKFFEHGSPDQRKE-LAEKLVGQVLPLSLQMYGCRVIQKALEVI-ELHQKSQLVLELD 546
V+QK E P++ E + G V+ LS YGCRVIQ+ LE + +S+++ E+
Sbjct: 755 VVQKCIEC-VPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEIL 813
Query: 547 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 606
V +DQ GN+V+Q +E ++ II G++ +S + V+++ L
Sbjct: 814 STVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGG 873
Query: 607 DEQQGQCIVDEIL------ESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQ 660
E++ + +V+E+L E A+ +DQ+ NYV Q VLE +R IL+++ +
Sbjct: 874 PEER-ELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLTA 932
Query: 661 MSQHKYASNVVEKCLEYGDTAERELLIEEI 690
+ ++ Y +VV + + ER + ++ +
Sbjct: 933 LKKYTYGKHVVARIEKLVAAGERRMALQSL 962
Score = 164 (62.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 119/573 (20%), Positives = 218/573 (38%)
Query: 128 GMNNAHNGMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQPSGA 187
G+ HN ++++ + + + +A S+ + L P ++ + NP+ P+
Sbjct: 344 GLQGGHNEVNQHEFPNKSDQAHKATGSLRNSQLRGPHGSAYNGGVGLANPYQQLDSPN-- 401
Query: 188 GVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTS------VSTG 241
Y + YALN A+ + PM +D S F+ + VS+G
Sbjct: 402 ------YCLNNYALNPAVASMMANQLGNNNFAPM-YDNVSALGFSGMDSRHHGRGFVSSG 454
Query: 242 EGIP---HIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVN 298
+ + ++G ++ G GL QS VDP++ QY D N R G
Sbjct: 455 QNLSESRNLGRFSNRMMGGGAGL--QSHMVDPMYNQYADSL--DLLNDPSMDRNFMGG-- 508
Query: 299 GALADPSSKKEPIVAAYMGDQNLQSSLNGGPSISNPRKXXXXXXXXXXXXXXXXXXXQFP 358
+ D + AY+G Q Q + P K +P
Sbjct: 509 SSYMDMLELQR----AYLGAQKSQYGV--------PYKSGSPNSHSYYGSPTFGSNMSYP 556
Query: 359 TSPIASPVLPSSPVGSTSQLGLRH-EMRLPQGL-NRNTGIYSGWQGQRTF-EG-----QR 410
SP+A +P+S + S + MR P N + G+ W +F EG
Sbjct: 557 GSPLAHHGMPNSLMSPYSPMRRDEVNMRFPSATRNYSGGLMGSWHMDASFDEGFGSSMLE 616
Query: 411 TFEDSKKHSF-LEELK------SSNA-------QKFELS----------DIAGRIVEFSV 446
F+ +K F L E+ SS+ QK E + +I + +
Sbjct: 617 EFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMT 676
Query: 447 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELA 506
D G+ IQ+ EH ++ + +++ H L ++G VIQK E DQ+ ++
Sbjct: 677 DVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMV 736
Query: 507 EKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI 566
++L G V+ G V+QK +E + ++ GHV+ G VIQ+ +
Sbjct: 737 KELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVL 796
Query: 567 ECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE---QQGQCIVDEILESAF 623
E + + ++T+S + V++H + + I+ E+
Sbjct: 797 EHCHDPDTQSKV--MEEILSTVSMLAQD-QYGNYVVQHVLEHGKPDERTVIIKELAGKIV 853
Query: 624 ALAQDQYGNYVTQHVLERGKSYERTQILSKLAG 656
++Q ++ + V + L G ER +++++ G
Sbjct: 854 QMSQQKFASNVVEKCLTFGGPEERELLVNEMLG 886
Score = 40 (19.1 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 30 ISNNG---PAAVSFSSSPCPDGTETSRNPRIDDTNSKN 64
+S NG P A++ SPC + R D N+ N
Sbjct: 256 LSRNGTPDPQAIARVPSPCLTPIGSGRMSSNDKRNTSN 293
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 1259 (448.2 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
Identities = 250/405 (61%), Positives = 304/405 (75%)
Query: 357 FPTSPIASPVLPSSPVGSTSQLGLRHE--MRLPQGLNRNTGIYSGWQGQRTFEGQRTFED 414
+P SP+A +LP+S V S + R E MR P G G G ++ + ++
Sbjct: 559 YPGSPLAHHLLPNSLVSPCSPMR-RGEVNMRYPSATRNYAG---GVMG--SWHMDASLDE 612
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S LEE KS+ + FEL++IAG +VEFS DQ+GSRFIQQKLE +++EK V++E++
Sbjct: 613 GFGSSMLEEFKSNKTRGFELAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIM 672
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
PHA LMTDVFGNYVIQKFFEHG P QR+ELA+KL VLPLSLQMYGCRVIQKA+EV++
Sbjct: 673 PHALALMTDVFGNYVIQKFFEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVD 732
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
L QK ++V ELDGHVMRCVRDQNGNHV+QKCIECVP E IEFIIS F G V TLSTHPYG
Sbjct: 733 LDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYG 792
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQRVLEHC D ++DEI+ + LAQDQYGNYV QHVLE GK ERT I+ +L
Sbjct: 793 CRVIQRVLEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKEL 852
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQ 714
AGKIVQMSQ K+ASNVVEKCL +G ERE L+ E+LG ++EN+ L MMKDQ+ANYVVQ
Sbjct: 853 AGKIVQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQ 912
Query: 715 KILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLYGEG 759
K+LE C+++ RE ++ RI+VH +ALKKYTYGKHIVAR E+L G
Sbjct: 913 KVLETCDDQQRELILGRIKVHLNALKKYTYGKHIVARVEKLVAAG 957
Score = 294 (108.6 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 134/591 (22%), Positives = 243/591 (41%)
Query: 128 GMNNAHNGMDKNSYGHGKFSS-FE---AQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQ 183
G+N A M N G +S +E A +M G+ L+ G Y+ SG S
Sbjct: 413 GLNPAVASMMANQLGTNNYSPVYENASAASAMGFSGMDSRLHG--GGYVSSGQNLSES-- 468
Query: 184 PSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEG 243
G + ++ GG L S + P Y D + S ++ G
Sbjct: 469 -RNLGRFSNRMMGGGTGLQSHMADPMYHQYADS------LDLLNDPSMDVNFM------G 515
Query: 244 IPHIGSTQHQKFY-GHQGLMLQSPFVD--P-LHMQYFQHPFGDAYNASVQHRLASSGV-- 297
++ + Q+ Y G Q P+ P H Y FG + + H L + +
Sbjct: 516 NSYMNMLELQRAYLGAQKSQYGVPYKSGSPNSHTDYGSPTFGSYPGSPLAHHLLPNSLVS 575
Query: 298 ------NGA--LADPSSKKEPIVAAYMGDQNLQSSLNGGPSISNPRKXXXXXXXXXXXXX 349
G + PS+ + MG ++ +SL+ G S +
Sbjct: 576 PCSPMRRGEVNMRYPSATRN-YAGGVMGSWHMDASLDEGFGSSMLEEFKSNKTRGFELAE 634
Query: 350 XXXXXXQFPTSPIASPVLPSSPVGSTS-QLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEG 408
+F + S + +TS + + +E +P L T ++ + Q+ FE
Sbjct: 635 IAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFE- 693
Query: 409 QRTFEDSKKHSFLEELKSSNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV 467
H Q+ EL+D + ++ S+ +G R IQ+ +E ++K+
Sbjct: 694 ---------HGL-------PPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKI 737
Query: 468 SVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKE-LAEKLVGQVLPLSLQMYGCRVI 526
+ KE+ H + + D GN+V+QK E P++ E + G V+ LS YGCRVI
Sbjct: 738 KMVKELDGHVMRCVRDQNGNHVVQKCIEC-VPEENIEFIISTFFGNVVTLSTHPYGCRVI 796
Query: 527 QKALEVI-ELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQV 585
Q+ LE + +S+++ E+ + +DQ GN+VIQ +E ++ II G++
Sbjct: 797 QRVLEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKI 856
Query: 586 ATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL------ESAFALAQDQYGNYVTQHVL 639
+S + V+++ L E++ + +V+E+L E A+ +DQ+ NYV Q VL
Sbjct: 857 VQMSQQKFASNVVEKCLTFGGPEER-EFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVL 915
Query: 640 ERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 690
E +R IL ++ + + ++ Y ++V + + ER + ++ +
Sbjct: 916 ETCDDQQRELILGRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQSL 966
Score = 43 (20.2 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 30 ISNNG---PAAVSFSSSPC--PDGT-ETSRNPRIDDTNSK--NAGL 67
+S NG P A++ SPC P G+ S N + + +N N GL
Sbjct: 264 LSRNGTPDPQAIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNGGL 309
Score = 43 (20.2 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 215 SQGPVPMP--FDATSGSSFNIRTTSVSTGE-------GIPHIGSTQHQKFY 256
SQ MP FD F + TS S+ E G+P +G QK +
Sbjct: 153 SQSLFSMPPGFDQRKQHEFEVEKTSASSSEWDANGLIGLPGLGIGGKQKSF 203
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
Identities = 285/587 (48%), Positives = 364/587 (62%)
Query: 185 SGAGVY-PSQYNVGG--YALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTG 241
SG+GV P Q++ YALN A+ + PM +A++ ++ + + G
Sbjct: 381 SGSGVANPYQHHDSPNYYALNPAVASMMANQLGTNNYSPMYENASATLGYSAMDSRLHGG 440
Query: 242 EGIPHIGSTQHQKFYGHQG-LMLQ------SPFVDPLHMQYFQHPFGDAYNASVQHRLAS 294
+ + + G G M++ S DP++ QY + F + NA L
Sbjct: 441 SFVSSGQNLSESRNIGRVGNRMMEGGTGHPSHLADPMYHQYAR--FSE--NADSFDLLND 496
Query: 295 SGVNGALADPSSKKEPIVAAYMGDQNLQSSLNGGPSISNPRKXXXXXXXXXXXXXXXXXX 354
++ + I AY+G Q Q L P K
Sbjct: 497 PSMDRNYGNSYMNMLEIQRAYLGSQKSQYGL--------PYKSGSPNSHSYYGSPTFGSN 548
Query: 355 XQFPTSPIASPVLPSSPVGSTSQLGLRHE--MRLPQGLNRNTGIYSGWQGQRTFEGQRTF 412
+P SP+A +P+S + S + R E MR P TG G G ++ +
Sbjct: 549 MSYPGSPLAHHGMPNSLMSPYSPMR-RGEVNMRYPAATRNYTG---GVMG--SWHMDASL 602
Query: 413 EDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKE 472
++ S LEE KS+ + FELS+IAG +VEFS DQ+GSRFIQQKLE + +EK V++E
Sbjct: 603 DEGFGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEE 662
Query: 473 VLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEV 532
++P A LMTDVFGNYVIQKFFEHG P QR+EL EKL+ VLPLSLQMYGCRVIQKA+EV
Sbjct: 663 IMPKALALMTDVFGNYVIQKFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEV 722
Query: 533 IELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
++L QK Q+V ELDGHVMRCVRDQNGNHV+QKCIECVP E IEFIIS F G V TLSTHP
Sbjct: 723 VDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHP 782
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQRVLEHC + +++EIL + L QDQYGNYV QHVLE GK ERT I+
Sbjct: 783 YGCRVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIK 842
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYV 712
+LAGKIVQMSQ K+ASNVVEKCL +G ERELL+ E+LG ++EN+ L MMKDQ+ANYV
Sbjct: 843 ELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYV 902
Query: 713 VQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLYGEG 759
VQK+LE C+++ RE +++RI+VH +ALKKYTYGKHIVAR E+L G
Sbjct: 903 VQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAAG 949
Score = 287 (106.1 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 127/545 (23%), Positives = 232/545 (42%)
Query: 181 SFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFD----ATSGSSFNI-RT 235
SF SG + S+ N+G N + G+PS PM + + SF++
Sbjct: 441 SFVSSGQNLSESR-NIGRVG-NRMMEGG--TGHPSHLADPMYHQYARFSENADSFDLLND 496
Query: 236 TSVSTGEGIPHIGSTQHQKFY-GHQGLMLQSPFVD--PLHMQYFQHP-FGDAYNASVQHR 291
S+ G ++ + Q+ Y G Q P+ P Y+ P FG N S
Sbjct: 497 PSMDRNYGNSYMNMLEIQRAYLGSQKSQYGLPYKSGSPNSHSYYGSPTFGS--NMSYPGS 554
Query: 292 -LASSGVNGALADPSS--KKEPIVAAY-----------MGDQNLQSSLNGGPSISNPRKX 337
LA G+ +L P S ++ + Y MG ++ +SL+ G S +
Sbjct: 555 PLAHHGMPNSLMSPYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEF 614
Query: 338 XXXXXXXXXXXXXXXXXXQFPTSPIASPVLPSS-PVGSTSQLGLRHEMRLPQGLNRNTGI 396
+F + S + +T + + +E +P+ L T +
Sbjct: 615 KSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDV 674
Query: 397 YSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSD-IAGRIVEFSVDQHGSRFIQ 455
+ + Q+ FE H Q+ EL + + ++ S+ +G R IQ
Sbjct: 675 FGNYVIQKFFE----------HGL-------PPQRRELGEKLIDNVLPLSLQMYGCRVIQ 717
Query: 456 QKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKE-LAEKLVGQVL 514
+ +E ++K+ + KE+ H + + D GN+V+QK E P++ E + G V+
Sbjct: 718 KAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCIEC-VPEENIEFIISTFFGHVV 776
Query: 515 PLSLQMYGCRVIQKALEVIELHQ---KSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPA 571
LS YGCRVIQ+ LE H +S+++ E+ V +DQ GN+V+Q +E
Sbjct: 777 TLSTHPYGCRVIQRVLE--HCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKP 834
Query: 572 EKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL------ESAFAL 625
++ II G++ +S + V+++ L E++ + +V+E+L E A+
Sbjct: 835 DERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEER-ELLVNEMLGTTDENEPLQAM 893
Query: 626 AQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAEREL 685
+DQ+ NYV Q VLE +R IL+++ + + ++ Y ++V + + ER +
Sbjct: 894 MKDQFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRM 953
Query: 686 LIEEI 690
++ +
Sbjct: 954 ALQSL 958
Score = 230 (86.0 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 132/631 (20%), Positives = 248/631 (39%)
Query: 128 GMNNAHNGMDKNSYGHGKFSSFEAQPSMNSP--GLTPPLYAS----AGTYMPSGNPFYPS 181
G+ + HN ++ + + + + NS G Y S A Y +P Y +
Sbjct: 340 GLQDGHNEVNPHGFPNRSDQARGTASCRNSQMRGSQGSAYNSGSGVANPYQHHDSPNYYA 399
Query: 182 FQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTG 241
P+ A + +Q Y+ P + + G M G SF ++S
Sbjct: 400 LNPAVASMMANQLGTNNYS------PMYENASATLGYSAMD-SRLHGGSFVSSGQNLSES 452
Query: 242 EGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGAL 301
I +G+ + GH S DP++ QY + F + NA L ++
Sbjct: 453 RNIGRVGNRMMEGGTGHP-----SHLADPMYHQYAR--FSE--NADSFDLLNDPSMDRNY 503
Query: 302 ADPSSKKEPIVAAYMGDQNLQSSL---NGGPSISNPRKXXXXXXXXXXXXXXXXXXXQFP 358
+ I AY+G Q Q L +G P+ S+ P
Sbjct: 504 GNSYMNMLEIQRAYLGSQKSQYGLPYKSGSPN-SHSYYGSPTFGSNMSYPGSPLAHHGMP 562
Query: 359 TSPIASPVLPSS--------PVGSTSQLG-LRHEMRLPQGLNRNTG--IYSGWQGQRT-- 405
S + SP P P + + G + + L+ G + ++ +T
Sbjct: 563 NS-LMSPYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEFKSNKTRG 621
Query: 406 FE-----GQRTFEDSKKHS--FLE---ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQ 455
FE G S ++ F++ E +++ + +I + + D G+ IQ
Sbjct: 622 FELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQ 681
Query: 456 QKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLP 515
+ EH ++ + ++++ + L ++G VIQK E DQ+ ++ ++L G V+
Sbjct: 682 KFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMR 741
Query: 516 LSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE-CVPAEKI 574
G V+QK +E + ++ GHV+ G VIQ+ +E C +
Sbjct: 742 CVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQ 801
Query: 575 EFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYV 634
++ V+ L+ YG V+Q VLEH +++ I+ E+ ++Q ++ + V
Sbjct: 802 SKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDER-TVIIKELAGKIVQMSQQKFASNV 860
Query: 635 TQHVLERGKSYERTQILSKLAGK------IVQMSQHKYASNVVEKCLEYGDTAERELLIE 688
+ L G ER +++++ G + M + ++A+ VV+K LE D +REL++
Sbjct: 861 VEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILT 920
Query: 689 EILGQSEENDNLLVMMKDQYANYVVQKILEK 719
I +L + K Y ++V ++ EK
Sbjct: 921 RI------KVHLNALKKYTYGKHIVARV-EK 944
Score = 219 (82.2 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 61/239 (25%), Positives = 119/239 (49%)
Query: 430 QKFEL-SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS-VFKEVLPHASKLMTDVFGN 487
QK ++ ++ G ++ DQ+G+ +Q+ +E C EE + + H L T +G
Sbjct: 727 QKIQMVKELDGHVMRCVRDQNGNHVVQKCIE-CVPEENIEFIISTFFGHVVTLSTHPYGC 785
Query: 488 YVIQKFFEH-GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 546
VIQ+ EH +PD + ++ E+++ V L+ YG V+Q LE + +++ ++ EL
Sbjct: 786 RVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELA 845
Query: 547 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ------VATLSTHPYGCRVIQR 600
G +++ + + ++V++KC+ E+ E +++ G + + + V+Q+
Sbjct: 846 GKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQK 905
Query: 601 VLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 659
VLE C D+QQ + I+ I AL + YG ++ V + + ER L L +V
Sbjct: 906 VLETC-DDQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQSLPQPLV 963
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
Identities = 220/376 (58%), Positives = 287/376 (76%)
Query: 384 MRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVE 443
MR+ Q + + G QG + T E S LE K++ + ELS+I G ++E
Sbjct: 616 MRMSQSASMMKVPFGGLQGSSHVDIGSTAEAS----LLEGFKNNKTRSLELSEIVGHVIE 671
Query: 444 FSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRK 503
FS+DQ+GSRFIQQKLE + EEK ++F E+LP+ LMTDVFGNYVIQKFFEHG+ QRK
Sbjct: 672 FSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRK 731
Query: 504 ELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 563
ELAE++ G VL LSLQMYGCRVIQKALEV+EL Q++++V ELDG VM+CV DQNGNHVIQ
Sbjct: 732 ELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQ 791
Query: 564 KCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAF 623
KCIE +P + I+FIIS+F G+V LSTHPYGCRVIQRVLEH D + + I++EI++S
Sbjct: 792 KCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVC 851
Query: 624 ALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAER 683
LAQDQYGNYV QH+++ GK +ER++I++KLAG+IV+MSQ K+ASNVVEKCL +G ER
Sbjct: 852 TLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEER 911
Query: 684 ELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYT 743
++L+ E+LG ++EN+ L MMKD + NYVVQK+LE C+++ ++SRI+VH +ALK+YT
Sbjct: 912 QVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYT 971
Query: 744 YGKHIVARFEQLYGEG 759
YGKHIVAR E+L G
Sbjct: 972 YGKHIVARVEKLITTG 987
Score = 308 (113.5 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 84/266 (31%), Positives = 140/266 (52%)
Query: 430 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 488
Q+ EL++ + G ++ S+ +G R IQ+ LE E++ + KE+ K + D GN+
Sbjct: 729 QRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNH 788
Query: 489 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE--LD 546
VIQK E D + + G+VL LS YGCRVIQ+ LE I+ + ++++E +D
Sbjct: 789 VIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMD 848
Query: 547 GHVMRCVRDQNGNHVIQKCIEC-VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHC 605
V +DQ GN+VIQ I+ P E+ E II+ GQ+ +S + V+++ L
Sbjct: 849 S-VCTLAQDQYGNYVIQHIIQHGKPHERSE-IINKLAGQIVKMSQQKFASNVVEKCLTFG 906
Query: 606 SDEQQGQCIVDEIL------ESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 659
E++ Q +V+E+L E A+ +D +GNYV Q VLE ILS++ +
Sbjct: 907 GPEER-QVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLN 965
Query: 660 QMSQHKYASNVVEKCLEYGDTAEREL 685
+ ++ Y ++V + + T ER +
Sbjct: 966 ALKRYTYGKHIVARVEKLITTGERRI 991
Score = 198 (74.8 bits), Expect = 7.5e-12, P = 7.5e-12
Identities = 96/451 (21%), Positives = 180/451 (39%)
Query: 263 LQSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQ 322
L SP +DP + QY A A + H L + + D +++ ++ A Q L
Sbjct: 521 LHSPVMDPHYSQYLHTASSTA--APIDHSLIRNNFGTSNGDTANEYLAMLLA-QNRQQL- 576
Query: 323 SSLNGGPS--ISNPRKXXXXXXXXXXXXXXXXXXXQFPTSPIA-SPVLPSSPVGSTSQLG 379
+LN S +P F ++ S + P G G
Sbjct: 577 GNLNAANSRFFESPSYDLGNMYLGNHLPSPSKNSRNFQNMRMSQSASMMKVPFG-----G 631
Query: 380 LRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRT--------FE-DSKKHSFLEELKSSNAQ 430
L+ + G + G++ +T + + F D F+++ K A
Sbjct: 632 LQGSSHVDIGSTAEASLLEGFKNNKTRSLELSEIVGHVIEFSMDQYGSRFIQQ-KLETAT 690
Query: 431 KFELSDIAGRIVEFS----VDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 486
E + I I+ + D G+ IQ+ EH + +++ + ++V H L ++G
Sbjct: 691 DEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYG 750
Query: 487 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 546
VIQK E +Q+ + ++L G V+ G VIQK +E + ++
Sbjct: 751 CRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLPQDWIQFIISSFY 810
Query: 547 GHVMRCVRDQNGNHVIQKCIECVP-AEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHC 605
G V+ G VIQ+ +E + E I+ V TL+ YG VIQ +++H
Sbjct: 811 GKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHG 870
Query: 606 SDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAG------KIV 659
++ + I++++ ++Q ++ + V + L G ER +++++ G +
Sbjct: 871 KPHERSE-IINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQ 929
Query: 660 QMSQHKYASNVVEKCLEYGDTAERELLIEEI 690
M + + + VV+K LE D L++ I
Sbjct: 930 AMMKDPFGNYVVQKVLETCDDQSLALILSRI 960
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 1025 (365.9 bits), Expect = 1.5e-106, Sum P(2) = 1.5e-106
Identities = 195/343 (56%), Positives = 257/343 (74%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 710 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 769
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 770 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 829
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q+S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 830 SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 889
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S++
Sbjct: 890 CRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 948
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + L MMKDQYANYVV
Sbjct: 949 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVV 1008
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1009 QKMIDMAEPAQRKIIMHKIRPHISTLRKYTYGKHILAKLEKYY 1051
Score = 49 (22.3 bits), Expect = 1.5e-106, Sum P(2) = 1.5e-106
Identities = 26/106 (24%), Positives = 42/106 (39%)
Query: 139 NSYGHGKFSSFEAQPSMNSPGLTPPLYA-SAGTYMPSGNPFYPSFQPSGAGVYPSQYNVG 197
+S G SS + S+++ + LY S+ + P G PFY S G PS +
Sbjct: 577 SSVGSSASSSATRRESLST---SSDLYKRSSSSLAPIGQPFYNSL---GFSSSPSPIGM- 629
Query: 198 GYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEG 243
P + P P P ++ GSS ++ ++ G G
Sbjct: 630 ----------PLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG 665
Score = 45 (20.9 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 263 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 310
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 341 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTANQQAASQAQP 386
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 1024 (365.5 bits), Expect = 1.5e-106, Sum P(2) = 1.5e-106
Identities = 195/343 (56%), Positives = 257/343 (74%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 649 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 708
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 709 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 768
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q+S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 769 SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 828
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S++
Sbjct: 829 CRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 887
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + L MMKDQYANYVV
Sbjct: 888 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVV 947
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 948 QKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 990
Score = 50 (22.7 bits), Expect = 1.5e-106, Sum P(2) = 1.5e-106
Identities = 29/120 (24%), Positives = 47/120 (39%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG + ++ G S G F S + +S L S+ Y S + P QP
Sbjct: 494 SLGFGSGNSLGAAIGSALSG-FGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQP 552
Query: 185 SGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEG 243
YN G++ + S + P + P P P ++ GSS ++ ++ G G
Sbjct: 553 F--------YNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG 604
Score = 46 (21.3 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 263 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 310
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 279 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTASQQAASQAQP 324
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 1024 (365.5 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 195/343 (56%), Positives = 257/343 (74%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 704 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 763
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 764 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 823
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q+S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 824 SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 883
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S++
Sbjct: 884 CRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 942
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + L MMKDQYANYVV
Sbjct: 943 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVV 1002
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1003 QKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 1045
Score = 49 (22.3 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 26/106 (24%), Positives = 42/106 (39%)
Query: 139 NSYGHGKFSSFEAQPSMNSPGLTPPLYA-SAGTYMPSGNPFYPSFQPSGAGVYPSQYNVG 197
+S G SS + S+++ + LY S+ + P G PFY S G PS +
Sbjct: 571 SSVGSSASSSATRRESLST---SSDLYKRSSSSLAPIGQPFYNSL---GFSSSPSPIGM- 623
Query: 198 GYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEG 243
P + P P P ++ GSS ++ ++ G G
Sbjct: 624 ----------PLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG 659
Score = 45 (20.9 bits), Expect = 5.1e-106, Sum P(2) = 5.1e-106
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 263 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 310
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 335 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTANQQAASQAQP 380
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 1024 (365.5 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 195/343 (56%), Positives = 257/343 (74%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 764
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q+S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 825 SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 884
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S++
Sbjct: 885 CRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 943
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + L MMKDQYANYVV
Sbjct: 944 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVV 1003
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1004 QKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 1046
Score = 49 (22.3 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 26/106 (24%), Positives = 42/106 (39%)
Query: 139 NSYGHGKFSSFEAQPSMNSPGLTPPLYA-SAGTYMPSGNPFYPSFQPSGAGVYPSQYNVG 197
+S G SS + S+++ + LY S+ + P G PFY S G PS +
Sbjct: 572 SSVGSSASSSATRRESLST---SSDLYKRSSSSLAPIGQPFYNSL---GFSSSPSPIGM- 624
Query: 198 GYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEG 243
P + P P P ++ GSS ++ ++ G G
Sbjct: 625 ----------PLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG 660
Score = 45 (20.9 bits), Expect = 5.1e-106, Sum P(2) = 5.1e-106
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 263 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 310
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 339 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTANQQAASQAQP 384
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 1020 (364.1 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 194/343 (56%), Positives = 257/343 (74%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 703 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 762
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 763 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 822
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 823 PDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 882
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S++
Sbjct: 883 CRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 941
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + L MMKDQYANYVV
Sbjct: 942 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVV 1001
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1002 QKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 1044
Score = 239 (89.2 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 90/344 (26%), Positives = 146/344 (42%)
Query: 360 SPIASPVLPS-------SPVGSTSQLGLRHEMRLPQGLNRNTGIY-SGWQGQRTFEGQRT 411
SPI P LPS +P S S G + L GL +G Y S G + +
Sbjct: 618 SPIGMP-LPSQTPGHSLTPPPSLSSHGSSSSLHLG-GLTNGSGRYISAAPGAEA-KYRSA 674
Query: 412 FEDSKKHSFLEELKSSNAQKFELSDI--AGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 469
S S +L + ++ SDI +GR D +RF +L
Sbjct: 675 ASTSSLFSSTSQLFPPSRLRYSRSDIMPSGRS-RLLEDFRNNRFPNLQL----------- 722
Query: 470 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 529
++++ H + D G+ IQ+ E +P +R+ + +++ L ++G VIQK
Sbjct: 723 -RDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 781
Query: 530 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 589
E L QK L + GHV+ G VIQK +E + ++ ++ G V
Sbjct: 782 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCV 841
Query: 590 THPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQ 649
G V+Q+ +E C Q Q I+D F L+ YG V Q +LE + +
Sbjct: 842 KDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 900
Query: 650 ILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ 693
IL +L Q+ Q +Y + V++ LE+G ++ ++ EI G+
Sbjct: 901 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGK 944
Score = 52 (23.4 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 24/101 (23%), Positives = 39/101 (38%)
Query: 144 GKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALN- 202
G F S + +S L S+ Y S + P QP YN G++ +
Sbjct: 566 GGFGSSVGSSASSSATRRDSLSTSSDLYKRSSSSLAPIGQPF--------YNSLGFSSSP 617
Query: 203 SALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEG 243
S + P + P P P ++ GSS ++ ++ G G
Sbjct: 618 SPIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG 658
Score = 39 (18.8 bits), Expect = 5.8e-105, Sum P(2) = 5.8e-105
Identities = 37/137 (27%), Positives = 51/137 (37%)
Query: 126 SLGMNNAH--NGMDKNSYGHGKFSSFEAQPSMNSPGL--TPPLYASAGTYMPSGNPFYPS 181
SL N+ + N + NS FS QP S G + L A+ G+ + S
Sbjct: 515 SLQSNSFYGSNSLTNNSPNSSLFSHGPGQPGSTSLGFGSSSSLGAAIGSALGGFGSSVGS 574
Query: 182 FQPSGAGVYPSQYNVGG-YALNSA-LFP---PFV--AGYPSQ-GPVPMPFDA-TSGSSFN 232
S A S Y +S+ L P PF G+ S P+ MP + T G S
Sbjct: 575 SASSSATRRDSLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLT 634
Query: 233 IRTTSVSTGEGIP-HIG 248
+ S G H+G
Sbjct: 635 PPPSLSSHGSSSSLHLG 651
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 1020 (364.1 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 194/343 (56%), Positives = 257/343 (74%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 702 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 761
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 762 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 821
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 822 PDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 881
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S++
Sbjct: 882 CRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 940
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + L MMKDQYANYVV
Sbjct: 941 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVV 1000
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1001 QKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 1043
Score = 239 (89.2 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 90/344 (26%), Positives = 146/344 (42%)
Query: 360 SPIASPVLPS-------SPVGSTSQLGLRHEMRLPQGLNRNTGIY-SGWQGQRTFEGQRT 411
SPI P LPS +P S S G + L GL +G Y S G + +
Sbjct: 617 SPIGMP-LPSQTPGHSLTPPPSLSSHGSSSSLHLG-GLTNGSGRYISAAPGAEA-KYRSA 673
Query: 412 FEDSKKHSFLEELKSSNAQKFELSDI--AGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 469
S S +L + ++ SDI +GR D +RF +L
Sbjct: 674 ASTSSLFSSTSQLFPPSRLRYSRSDIMPSGRS-RLLEDFRNNRFPNLQL----------- 721
Query: 470 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 529
++++ H + D G+ IQ+ E +P +R+ + +++ L ++G VIQK
Sbjct: 722 -RDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 780
Query: 530 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 589
E L QK L + GHV+ G VIQK +E + ++ ++ G V
Sbjct: 781 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCV 840
Query: 590 THPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQ 649
G V+Q+ +E C Q Q I+D F L+ YG V Q +LE + +
Sbjct: 841 KDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 899
Query: 650 ILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ 693
IL +L Q+ Q +Y + V++ LE+G ++ ++ EI G+
Sbjct: 900 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGK 943
Score = 52 (23.4 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 24/101 (23%), Positives = 39/101 (38%)
Query: 144 GKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALN- 202
G F S + +S L S+ Y S + P QP YN G++ +
Sbjct: 565 GGFGSSVGSSASSSATRRDSLSTSSDLYKRSSSSLAPIGQPF--------YNSLGFSSSP 616
Query: 203 SALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEG 243
S + P + P P P ++ GSS ++ ++ G G
Sbjct: 617 SPIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG 657
Score = 39 (18.8 bits), Expect = 5.8e-105, Sum P(2) = 5.8e-105
Identities = 37/137 (27%), Positives = 51/137 (37%)
Query: 126 SLGMNNAH--NGMDKNSYGHGKFSSFEAQPSMNSPGL--TPPLYASAGTYMPSGNPFYPS 181
SL N+ + N + NS FS QP S G + L A+ G+ + S
Sbjct: 514 SLQSNSFYGSNSLTNNSPNSSLFSHGPGQPGSTSLGFGSSSSLGAAIGSALGGFGSSVGS 573
Query: 182 FQPSGAGVYPSQYNVGG-YALNSA-LFP---PFV--AGYPSQ-GPVPMPFDA-TSGSSFN 232
S A S Y +S+ L P PF G+ S P+ MP + T G S
Sbjct: 574 SASSSATRRDSLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLT 633
Query: 233 IRTTSVSTGEGIP-HIG 248
+ S G H+G
Sbjct: 634 PPPSLSSHGSSSSLHLG 650
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 994 (355.0 bits), Expect = 1.3e-105, Sum P(3) = 1.3e-105
Identities = 195/337 (57%), Positives = 249/337 (73%)
Query: 421 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 480
LE+ ++ +L D+A IVEFS DQHGSRFIQQKLE +A EK VF E+L A L
Sbjct: 1096 LEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSL 1155
Query: 481 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 540
MTDVFGNYVIQKFFE G+P+Q+ L ++ G VL L+LQMYGCRVIQKALE I Q+ +
Sbjct: 1156 MTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQE 1215
Query: 541 LVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQR 600
+V ELDGHV++CV+DQNGNHV+QKCIECV ++FII+AF+GQV +LSTHPYGCRVIQR
Sbjct: 1216 IVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQR 1275
Query: 601 VLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQ 660
+LEHC+ EQ I+DE+ E L QDQYGNYV QHVLE GK +++ +++ + GK++
Sbjct: 1276 ILEHCTAEQTTP-ILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLV 1334
Query: 661 MSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLL-VMMKDQYANYVVQKILEK 719
+SQHK+ASNVVEKC+ + ER LI+E+ NDN L VMMKDQYANYVVQK+++
Sbjct: 1335 LSQHKFASNVVEKCVTHATRGERTGLIDEVC---TFNDNALHVMMKDQYANYVVQKMIDV 1391
Query: 720 CNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
+ L+++IR H AL+KYTYGKHI A+ E+ Y
Sbjct: 1392 SEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEKYY 1428
Score = 119 (46.9 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 31/152 (20%), Positives = 69/152 (45%)
Query: 600 RVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 659
R+LE +++ + ++ +QDQ+G+ Q LER + E+ + S++
Sbjct: 1094 RLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAY 1153
Query: 660 QMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEK 719
+ + + V++K E+G ++ L ++ G ++L + Y V+QK LE
Sbjct: 1154 SLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKG------HVLQLALQMYGCRVIQKALES 1207
Query: 720 CNEKLRETLISRIRVHCDALKKYTYGKHIVAR 751
+ + ++ ++ + H K G H+V +
Sbjct: 1208 ISPEQQQEIVHELDGHVLKCVKDQNGNHVVQK 1239
Score = 64 (27.6 bits), Expect = 1.3e-105, Sum P(3) = 1.3e-105
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 157 SPGLTPPLYASAGTYMPSGNPFY-PSFQPSGAGVYPSQY--NVGGYALNSA 204
+P L PP AG P G Y P Q + +Y Q +VGG ALN++
Sbjct: 844 APVLVPPGATRAGPPPPQGPQLYQPQPQTAQQNLYSQQNGSSVGGLALNTS 894
Score = 42 (19.8 bits), Expect = 1.3e-105, Sum P(3) = 1.3e-105
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 293 ASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLNG 327
A+SG GAL ++ P+ A + QS L G
Sbjct: 957 AASGAYGALGAGNASASPLGAPITPPPSAQSCLLG 991
Score = 39 (18.8 bits), Expect = 9.7e-101, Sum P(2) = 9.7e-101
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 84 AESRMRKKQEEQ 95
AESR R++Q++Q
Sbjct: 997 AESRQRQQQQQQ 1008
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 1013 (361.7 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 195/345 (56%), Positives = 257/345 (74%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 764
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 825 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 884
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S
Sbjct: 885 YGCRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 943
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 711
++ GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + L MMKDQYANY
Sbjct: 944 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANY 1003
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1004 VVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 1048
Score = 50 (22.7 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 29/120 (24%), Positives = 47/120 (39%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG + ++ G S G F S + +S L S+ Y S + P QP
Sbjct: 550 SLGFGSGNSLGAAIGSALSG-FGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQP 608
Query: 185 SGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEG 243
YN G++ + S + P + P P P ++ GSS ++ ++ G G
Sbjct: 609 F--------YNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG 660
Score = 46 (21.3 bits), Expect = 5.8e-105, Sum P(2) = 5.8e-105
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 263 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 310
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 335 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTASQQAASQAQP 380
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 1012 (361.3 bits), Expect = 3.5e-105, Sum P(2) = 3.5e-105
Identities = 195/345 (56%), Positives = 257/345 (74%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEIL 764
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 825 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 884
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S
Sbjct: 885 YGCRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 943
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 711
++ GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + L MMKDQYANY
Sbjct: 944 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANY 1003
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1004 VVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 1048
Score = 49 (22.3 bits), Expect = 3.5e-105, Sum P(2) = 3.5e-105
Identities = 26/106 (24%), Positives = 42/106 (39%)
Query: 139 NSYGHGKFSSFEAQPSMNSPGLTPPLYA-SAGTYMPSGNPFYPSFQPSGAGVYPSQYNVG 197
+S G SS + S+++ + LY S+ + P G PFY S G PS +
Sbjct: 572 SSVGSSASSSATRRESLST---SSDLYKRSSSSLAPIGQPFYNSL---GFSSSPSPIGM- 624
Query: 198 GYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEG 243
P + P P P ++ GSS ++ ++ G G
Sbjct: 625 ----------PLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG 660
Score = 46 (21.3 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 263 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 310
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 334 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAASNTANQQAASQAQP 379
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 1011 (360.9 bits), Expect = 4.5e-105, Sum P(2) = 4.5e-105
Identities = 194/345 (56%), Positives = 257/345 (74%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E++
Sbjct: 543 SGRSRLLEDFRNNRFPNLQLRDLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIV 602
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 603 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALANRIRGHVLPLALQMYGCRVIQKALESIS 662
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 663 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 722
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S
Sbjct: 723 YGCRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 781
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 711
++ GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + L MMKDQYANY
Sbjct: 782 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANY 841
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 842 VVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 886
Score = 49 (22.3 bits), Expect = 4.5e-105, Sum P(2) = 4.5e-105
Identities = 26/106 (24%), Positives = 42/106 (39%)
Query: 139 NSYGHGKFSSFEAQPSMNSPGLTPPLYA-SAGTYMPSGNPFYPSFQPSGAGVYPSQYNVG 197
+S G SS + S+++ + LY S+ + P G PFY S G PS +
Sbjct: 410 SSVGSSASSSATRRESLST---SSDLYKRSSSSLAPIGQPFYNSL---GFSSSPSPIGM- 462
Query: 198 GYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEG 243
P + P P P ++ GSS ++ ++ G G
Sbjct: 463 ----------PLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG 498
Score = 46 (21.3 bits), Expect = 9.4e-105, Sum P(2) = 9.4e-105
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 263 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 310
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 171 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAASNTANQQAASQAQP 216
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 979 (349.7 bits), Expect = 1.2e-104, Sum P(3) = 1.2e-104
Identities = 186/343 (54%), Positives = 253/343 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE +A E+ VF E+L
Sbjct: 585 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEIL 644
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 645 QAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 704
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 705 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 764
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 765 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 823
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANYVV
Sbjct: 824 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVV 883
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 884 QKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 926
Score = 47 (21.6 bits), Expect = 1.2e-104, Sum P(3) = 1.2e-104
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 214 PSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 243
PSQGP P P ++ GSS ++ ++ G G
Sbjct: 507 PSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 540
Score = 44 (20.5 bits), Expect = 1.2e-104, Sum P(3) = 1.2e-104
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N + NS FS AQP+ S G
Sbjct: 406 NNSLSSNSQSSSLFSQGSAQPANTSLG 432
Score = 40 (19.1 bits), Expect = 3.1e-104, Sum P(3) = 3.1e-104
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 4 SEAPEANGSADVHVDPCVMDPQDIALISNNGPAAVSFSSSPCPDG 48
S GS+D++ +A I ++ ++SFSSSP P G
Sbjct: 463 SRRDSLTGSSDLYK----RTSSSLAPIGHSFYNSLSFSSSPGPVG 503
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 968 (345.8 bits), Expect = 1.7e-103, Sum P(3) = 1.7e-103
Identities = 186/345 (53%), Positives = 253/345 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE +A E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEIL 887
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1008 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1066
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 711
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANY
Sbjct: 1067 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANY 1126
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1127 VVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1171
Score = 47 (21.6 bits), Expect = 1.7e-103, Sum P(3) = 1.7e-103
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 214 PSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 243
PSQGP P P ++ GSS ++ ++ G G
Sbjct: 750 PSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 783
Score = 44 (20.5 bits), Expect = 1.7e-103, Sum P(3) = 1.7e-103
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N + NS FS AQP+ S G
Sbjct: 649 NNSLSSNSQSSSLFSQGSAQPANTSLG 675
Score = 40 (19.1 bits), Expect = 4.4e-103, Sum P(3) = 4.4e-103
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 4 SEAPEANGSADVHVDPCVMDPQDIALISNNGPAAVSFSSSPCPDG 48
S GS+D++ +A I ++ +++S+SSSP P G
Sbjct: 706 SRRDSLTGSSDLYK----RTSSSLAPIGHSFYSSLSYSSSPGPVG 746
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 972 (347.2 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
Identities = 190/346 (54%), Positives = 253/346 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG ++EFS DQHGSRFIQ KLE S E+ VF E+L
Sbjct: 792 SGRSRLLEDFRNNRYPNLQLREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEIL 851
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS DQ+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 852 QAAYQLMVDVFGNYVIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 911
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ-VATLSTH 591
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV ++FII AF+GQ V LSTH
Sbjct: 912 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPHALQFIIDAFKGQQVFALSTH 971
Query: 592 PYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQIL 651
PYGCRVIQR+LEHC EQ I++EI + L QDQYGNYV QHVLE G++ ++++I+
Sbjct: 972 PYGCRVIQRILEHCLPEQT-LSILEEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDKSKIV 1030
Query: 652 SKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYAN 710
S++ G ++ +SQHK+ASNVVEKC+ + AER +LI+E+ ++ + L MMKDQYAN
Sbjct: 1031 SEIRGNVLGLSQHKFASNVVEKCVTHSLRAERAMLIDEVCSMADGPHSALYTMMKDQYAN 1090
Query: 711 YVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
YVVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1091 YVVQKMIDVAEPTQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1136
Score = 246 (91.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 131/578 (22%), Positives = 226/578 (39%)
Query: 167 SAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDAT 226
++G + + P Q SGA S Y G + +S F G G + F+A
Sbjct: 581 ASGAFRALSSQQAPGQQGSGALGGSSFYGSGSPSSSSQSSSLFSQGSAQPGNTSLGFNAN 640
Query: 227 SGSSFNIRTTSVSTGEGIPHIGST-----QHQKFYGHQGLMLQSPF-VDPL-HMQYFQHP 279
SS + G G + ++ + G L ++ + P+ H ++
Sbjct: 641 PTSSLGATLGAALGGFGTAEVANSSSSGSRRDSLTGSSDLYKRTASSLTPIGHGAFYNGL 700
Query: 280 FGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLN-GGPSISNPRKXX 338
+ V L + G + +L P S + SSLN GG + + R
Sbjct: 701 SFSSSPGPVGMPLPNQGPSHSLTPPPS---------LSTHGSSSSLNLGGLTNGSGRFIS 751
Query: 339 XXXXXXXXXXXXXXXXXQFPTSPIASPVLPSSPVG-STSQLGLRHEMRLPQGLNRNTGIY 397
F SP +S + PSS + S + RL + N Y
Sbjct: 752 AAPGAEAKYRSATTGSSLF--SP-SSQLFPSSRLRYGMSDVMPSGRSRLLEDFRNNR--Y 806
Query: 398 SGWQGQRTFEGQ-RTFEDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSR 452
Q R G F + S +LK A E ++I + VD G+
Sbjct: 807 PNLQ-LREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEILQAAYQLMVDVFGNY 865
Query: 453 FIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLV 510
IQ+ E S ++K+++ + + H L ++G VIQK E DQ+ E+ +L
Sbjct: 866 VIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELD 925
Query: 511 GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH-VMRCVRDQNGNHVIQKCIE-C 568
G VL G V+QK +E ++ H ++ G V G VIQ+ +E C
Sbjct: 926 GHVLKCVKDQNGNHVVQKCIECVQPHALQFIIDAFKGQQVFALSTHPYGCRVIQRILEHC 985
Query: 569 VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQD 628
+P + + I+ L YG VIQ VLEH E + + IV EI + L+Q
Sbjct: 986 LPEQTLS-ILEEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDKSK-IVSEIRGNVLGLSQH 1043
Query: 629 QYGNYVTQHVLERGKSYERTQILSKLAGK-------IVQMSQHKYASNVVEKCLEYGDTA 681
++ + V + + ER ++ ++ + M + +YA+ VV+K ++ +
Sbjct: 1044 KFASNVVEKCVTHSLRAERAMLIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPT 1103
Query: 682 ERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEK 719
+R++++ +I ++ + K Y +++ K LEK
Sbjct: 1104 QRKIVMHKI------RPHIATLRKYTYGKHILAK-LEK 1134
Score = 65 (27.9 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
Identities = 34/124 (27%), Positives = 52/124 (41%)
Query: 126 SLGMN-NAHNGMDKN-SYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQ 183
SLG N N + + G F + E S +S L S+ Y + + S
Sbjct: 634 SLGFNANPTSSLGATLGAALGGFGTAEVANSSSSGSRRDSLTGSSDLYKRTAS----SLT 689
Query: 184 PSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVS 239
P G G + YN G + +S+ P + P+QGP P P +T GSS ++ ++
Sbjct: 690 PIGHGAF---YN--GLSFSSSPGPVGMP-LPNQGPSHSLTPPPSLSTHGSSSSLNLGGLT 743
Query: 240 TGEG 243
G G
Sbjct: 744 NGSG 747
Score = 57 (25.1 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 52/205 (25%), Positives = 75/205 (36%)
Query: 142 GHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQPS---GAGVYPSQYNVGG 198
G G +F A S +PG ++ SG+P S S P ++G
Sbjct: 578 GGGASGAFRALSSQQAPGQQGSGALGGSSFYGSGSPSSSSQSSSLFSQGSAQPGNTSLGF 637
Query: 199 YAL-NSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVS----TGEGIPHIGSTQHQ 253
A S+L A G + ++SGS + T S T + IG H
Sbjct: 638 NANPTSSLGATLGAALGGFGTAEVANSSSSGSRRDSLTGSSDLYKRTASSLTPIG---HG 694
Query: 254 KFYGHQGLMLQS---PFVDPLHMQYFQHPFGDAYNASVQHRLASSGVN-GALADPSSKKE 309
FY GL S P PL Q H + S H +SS +N G L + S +
Sbjct: 695 AFYN--GLSFSSSPGPVGMPLPNQGPSHSLTPPPSLST-HG-SSSSLNLGGLTNGSGR-- 748
Query: 310 PIVAAYMGDQNLQSSLNGGPSISNP 334
++A G + S G S+ +P
Sbjct: 749 -FISAAPGAEAKYRSATTGSSLFSP 772
Score = 37 (18.1 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 700 LSFSSSPGPVG 710
Score = 37 (18.1 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 141 YGHGKFSSFEAQPSMNSPGLTPPLYASAG 169
YG G SS S+ S G P S G
Sbjct: 608 YGSGSPSSSSQSSSLFSQGSAQPGNTSLG 636
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 974 (347.9 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 185/343 (53%), Positives = 252/343 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 947 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 1006
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 1007 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1065
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANYVV
Sbjct: 1066 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVV 1125
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1126 QKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1168
Score = 49 (22.3 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 33/123 (26%), Positives = 51/123 (41%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 672 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 726
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G + +S+ P + PSQGP P P ++ GSS ++ ++
Sbjct: 727 IGH----SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 779
Query: 241 GEG 243
G G
Sbjct: 780 GSG 782
Score = 44 (20.5 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N + NS FS AQP+ S G
Sbjct: 648 NNSLSSNSQSSSLFSQGSAQPANTSLG 674
Score = 37 (18.1 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 735 LSFSSSPGPVG 745
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 974 (347.9 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 185/343 (53%), Positives = 252/343 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 376 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 435
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 436 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 495
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 496 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 555
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 556 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 614
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANYVV
Sbjct: 615 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVV 674
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 675 QKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 717
Score = 49 (22.3 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 33/123 (26%), Positives = 51/123 (41%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 221 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 275
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G + +S+ P + PSQGP P P ++ GSS ++ ++
Sbjct: 276 IGH----SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 328
Query: 241 GEG 243
G G
Sbjct: 329 GSG 331
Score = 44 (20.5 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N + NS FS AQP+ S G
Sbjct: 197 NNSLSSNSQSSSLFSQGSAQPANTSLG 223
Score = 37 (18.1 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 284 LSFSSSPGPVG 294
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 973 (347.6 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 185/343 (53%), Positives = 252/343 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 768 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 827
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 828 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 887
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 888 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 947
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 948 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1006
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANYVV
Sbjct: 1007 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVV 1066
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1067 QKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1109
Score = 49 (22.3 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 33/123 (26%), Positives = 51/123 (41%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 613 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 667
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G + +S+ P + PSQGP P P ++ GSS ++ ++
Sbjct: 668 IGH----SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 720
Query: 241 GEG 243
G G
Sbjct: 721 GSG 723
Score = 45 (20.9 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N ++ NS FS AQP+ S G
Sbjct: 589 NNSLNSNSQSSSLFSQGSAQPANTSLG 615
Score = 37 (18.1 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 676 LSFSSSPGPVG 686
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 973 (347.6 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 185/343 (53%), Positives = 252/343 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 585 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 644
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 645 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 704
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 705 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 764
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 765 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 823
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANYVV
Sbjct: 824 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVV 883
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 884 QKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 926
Score = 49 (22.3 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 33/123 (26%), Positives = 51/123 (41%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 430 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 484
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G + +S+ P + PSQGP P P ++ GSS ++ ++
Sbjct: 485 IGH----SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 537
Query: 241 GEG 243
G G
Sbjct: 538 GSG 540
Score = 45 (20.9 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N ++ NS FS AQP+ S G
Sbjct: 406 NNSLNSNSQSSSLFSQGSAQPANTSLG 432
Score = 37 (18.1 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 493 LSFSSSPGPVG 503
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 973 (347.6 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 185/343 (53%), Positives = 252/343 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 947 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 1006
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 1007 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1065
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANYVV
Sbjct: 1066 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVV 1125
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1126 QKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1168
Score = 49 (22.3 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 33/123 (26%), Positives = 51/123 (41%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 672 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 726
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G + +S+ P + PSQGP P P ++ GSS ++ ++
Sbjct: 727 IGH----SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 779
Query: 241 GEG 243
G G
Sbjct: 780 GSG 782
Score = 45 (20.9 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N ++ NS FS AQP+ S G
Sbjct: 648 NNSLNSNSQSSSLFSQGSAQPANTSLG 674
Score = 37 (18.1 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 735 LSFSSSPGPVG 745
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 978 (349.3 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 193/349 (55%), Positives = 257/349 (73%)
Query: 409 QRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 468
Q+T E + + LE+ ++ K ELSDI G I EFS DQ GSR IQQK+E+ S EEK
Sbjct: 433 QQTNEYTTRSQLLEDFRNLK-MKLELSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQL 491
Query: 469 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 528
VF EV+ LMTDVFGNYV+QKFFEHG+ +Q++ LA+KL G +L L+LQMYGCRVIQK
Sbjct: 492 VFDEVVVAVHSLMTDVFGNYVLQKFFEHGTTEQKRILADKLSGHILSLTLQMYGCRVIQK 551
Query: 529 ALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 588
A+E IEL ++ L+ EL+GH+++CV DQNGNHVIQKCIE +P I+FII +F G + L
Sbjct: 552 AIESIELDKQILLIGELNGHIVQCVTDQNGNHVIQKCIEKIPTHLIQFIIDSFHGHIYQL 611
Query: 589 STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERT 648
+THPYGCRVIQR+LEHC+++Q I+DE++ A +L QDQYGNYV QHVLE G +++
Sbjct: 612 ATHPYGCRVIQRILEHCAEKQVAP-ILDELMRCAVSLVQDQYGNYVIQHVLENGTPRDKS 670
Query: 649 QILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ--SEENDNLLV-MMK 705
I+ KL G+I +SQHK+ASNV+EKC+++G TAER L+I EILG S + N+L+ ++K
Sbjct: 671 AIVCKLQGQIYNLSQHKFASNVIEKCVQHGCTAERILIINEILGDANSPNSSNVLLKILK 730
Query: 706 DQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQ 754
D YANYV+QKIL+ R+ +I+RI+ LKK T GKHI++R E+
Sbjct: 731 DPYANYVIQKILDIVEPAQRDMIINRIQPFVPTLKKVTPGKHIISRIEK 779
Score = 269 (99.8 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 73/260 (28%), Positives = 135/260 (51%)
Query: 430 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 488
QK L+D ++G I+ ++ +G R IQ+ +E ++++ + E+ H + +TD GN+
Sbjct: 524 QKRILADKLSGHILSLTLQMYGCRVIQKAIESIELDKQILLIGELNGHIVQCVTDQNGNH 583
Query: 489 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 548
VIQK E + + + G + L+ YGCRVIQ+ LE Q + ++ EL
Sbjct: 584 VIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMRC 643
Query: 549 VMRCVRDQNGNHVIQKCIEC-VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH-CS 606
+ V+DQ GN+VIQ +E P +K I+ +GQ+ LS H + VI++ ++H C+
Sbjct: 644 AVSLVQDQYGNYVIQHVLENGTPRDK-SAIVCKLQGQIYNLSQHKFASNVIEKCVQHGCT 702
Query: 607 DEQQGQCIVDEILESA---------FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGK 657
E+ I++EIL A + +D Y NYV Q +L+ + +R I++++
Sbjct: 703 AERI--LIINEILGDANSPNSSNVLLKILKDPYANYVIQKILDIVEPAQRDMIINRIQPF 760
Query: 658 IVQMSQHKYASNVVEKCLEY 677
+ + + +++ + +Y
Sbjct: 761 VPTLKKVTPGKHIISRIEKY 780
Score = 205 (77.2 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 52/187 (27%), Positives = 99/187 (52%)
Query: 431 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 490
+F + G I + + +G R IQ+ LEHC+ ++ + E++ A L+ D +GNYVI
Sbjct: 598 QFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMRCAVSLVQDQYGNYVI 657
Query: 491 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH-- 548
Q E+G+P + + KL GQ+ LS + VI+K ++ ++ ++ E+ G
Sbjct: 658 QHVLENGTPRDKSAIVCKLQGQIYNLSQHKFASNVIEKCVQHGCTAERILIINEILGDAN 717
Query: 549 -------VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVIQR 600
+++ ++D N+VIQK ++ V PA++ + II+ + V TL G +I R
Sbjct: 718 SPNSSNVLLKILKDPYANYVIQKILDIVEPAQR-DMIINRIQPFVPTLKKVTPGKHIISR 776
Query: 601 VLEHCSD 607
+ ++ ++
Sbjct: 777 IEKYSAN 783
Score = 43 (20.2 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 24 PQDIALISNNGPAAVSFSSSPCPDGTETS 52
P ++SNN +V SSSP P + S
Sbjct: 359 PAPNVVLSNNSTNSVVSSSSPPPTTSSPS 387
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 973 (347.6 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 185/343 (53%), Positives = 252/343 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 766 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 825
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 826 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 885
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 886 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 945
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 946 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1004
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 713
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANYVV
Sbjct: 1005 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVV 1064
Query: 714 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1065 QKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1107
Score = 45 (20.9 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N ++ NS FS AQP+ S G
Sbjct: 666 NNSLNSNSQSSSLFSQGSAQPANTSLG 692
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 966 (345.1 bits), Expect = 2.5e-100, Sum P(2) = 2.5e-100
Identities = 186/345 (53%), Positives = 252/345 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 887
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 PDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1008 YGCRVIQRILEHCLPEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1066
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 711
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANY
Sbjct: 1067 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANY 1126
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1127 VVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1171
Score = 49 (22.3 bits), Expect = 2.5e-100, Sum P(2) = 2.5e-100
Identities = 32/123 (26%), Positives = 49/123 (39%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 673 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 727
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G++ + P PSQGP P P ++ GSS ++ ++
Sbjct: 728 IGH----SFYNGLGFSSSPG---PVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 780
Query: 241 GEG 243
G G
Sbjct: 781 GSG 783
Score = 44 (20.5 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N + NS FS AQP+ S G
Sbjct: 649 NNSLSSNSQSSSLFSQGSAQPANTSLG 675
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 963 (344.1 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
Identities = 185/345 (53%), Positives = 252/345 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 863 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 922
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 923 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 982
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 983 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1042
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1043 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1101
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 711
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANY
Sbjct: 1102 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANY 1161
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1162 VVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1206
Score = 49 (22.3 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
Identities = 33/123 (26%), Positives = 51/123 (41%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 708 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 762
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G + +S+ P + PSQGP P P ++ GSS ++ ++
Sbjct: 763 IGH----SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 815
Query: 241 GEG 243
G G
Sbjct: 816 GSG 818
Score = 44 (20.5 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N + NS FS AQP+ S G
Sbjct: 684 NNSLSSNSQSSSLFSQGSAQPANTSLG 710
Score = 41 (19.5 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 134 NGMDKNS-YGHGKFSSFEAQPSMNSPGLTPPLYASAG 169
N + +S YG+ SS S+ S G P S G
Sbjct: 674 NSLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLG 710
Score = 41 (19.5 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 197 GGYA-LNSALFPPFVAGYPSQGPVPMPFDATSGSSF--NIRTTSVSTGEGIPHIGSTQ 251
GG A + F P P P P ++ + SSF N +S S + GS Q
Sbjct: 646 GGLAGTTNGPFRPLGTQQPQPQPQQQPSNSLASSSFYGNNSLSSNSQSSSLFSQGSAQ 703
Score = 37 (18.1 bits), Expect = 9.7e-99, Sum P(2) = 9.7e-99
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 771 LSFSSSPGPVG 781
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 963 (344.1 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
Identities = 185/345 (53%), Positives = 252/345 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 801 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 860
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 861 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 920
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 921 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 980
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 981 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1039
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 711
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANY
Sbjct: 1040 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANY 1099
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1100 VVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1144
Score = 49 (22.3 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
Identities = 33/123 (26%), Positives = 51/123 (41%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 646 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 700
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G + +S+ P + PSQGP P P ++ GSS ++ ++
Sbjct: 701 IGH----SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 753
Query: 241 GEG 243
G G
Sbjct: 754 GSG 756
Score = 44 (20.5 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N + NS FS AQP+ S G
Sbjct: 622 NNSLSSNSQSSSLFSQGSAQPANTSLG 648
Score = 41 (19.5 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 134 NGMDKNS-YGHGKFSSFEAQPSMNSPGLTPPLYASAG 169
N + +S YG+ SS S+ S G P S G
Sbjct: 612 NSLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLG 648
Score = 37 (18.1 bits), Expect = 9.7e-99, Sum P(2) = 9.7e-99
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 709 LSFSSSPGPVG 719
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 962 (343.7 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 185/345 (53%), Positives = 252/345 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 683 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 742
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 743 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 802
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 803 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 862
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 863 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 921
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 711
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANY
Sbjct: 922 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANY 981
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 982 VVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1026
Score = 49 (22.3 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 33/123 (26%), Positives = 51/123 (41%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 528 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 582
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G + +S+ P + PSQGP P P ++ GSS ++ ++
Sbjct: 583 IGH----SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 635
Query: 241 GEG 243
G G
Sbjct: 636 GSG 638
Score = 45 (20.9 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N ++ NS FS AQP+ S G
Sbjct: 504 NNSLNSNSQSSSLFSQGSAQPANTSLG 530
Score = 37 (18.1 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 591 LSFSSSPGPVG 601
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 962 (343.7 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 185/345 (53%), Positives = 252/345 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 947 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1006
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1007 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1065
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 711
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANY
Sbjct: 1066 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANY 1125
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1126 VVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1170
Score = 49 (22.3 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 33/123 (26%), Positives = 51/123 (41%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 672 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 726
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G + +S+ P + PSQGP P P ++ GSS ++ ++
Sbjct: 727 IGH----SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 779
Query: 241 GEG 243
G G
Sbjct: 780 GSG 782
Score = 45 (20.9 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N ++ NS FS AQP+ S G
Sbjct: 648 NNSLNSNSQSSSLFSQGSAQPANTSLG 674
Score = 37 (18.1 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 735 LSFSSSPGPVG 745
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 962 (343.7 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 185/345 (53%), Positives = 252/345 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 539 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 598
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 599 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 658
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 659 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 718
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 719 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 777
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 711
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANY
Sbjct: 778 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANY 837
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 838 VVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 882
Score = 49 (22.3 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 33/123 (26%), Positives = 51/123 (41%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 384 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 438
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G + +S+ P + PSQGP P P ++ GSS ++ ++
Sbjct: 439 IGH----SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 491
Query: 241 GEG 243
G G
Sbjct: 492 GSG 494
Score = 45 (20.9 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N ++ NS FS AQP+ S G
Sbjct: 360 NNSLNSNSQSSSLFSQGSAQPANTSLG 386
Score = 37 (18.1 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 447 LSFSSSPGPVG 457
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 962 (343.7 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 185/345 (53%), Positives = 252/345 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 887
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1008 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1066
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 711
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANY
Sbjct: 1067 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANY 1126
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1127 VVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1171
Score = 49 (22.3 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 33/123 (26%), Positives = 51/123 (41%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 673 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 727
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G + +S+ P + PSQGP P P ++ GSS ++ ++
Sbjct: 728 IGH----SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 780
Query: 241 GEG 243
G G
Sbjct: 781 GSG 783
Score = 45 (20.9 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N ++ NS FS AQP+ S G
Sbjct: 649 NNSLNSNSQSSSLFSQGSAQPANTSLG 675
Score = 37 (18.1 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 736 LSFSSSPGPVG 746
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 962 (343.7 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 185/345 (53%), Positives = 252/345 (73%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 863 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 922
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 923 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 982
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 983 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1042
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1043 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1101
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 711
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANY
Sbjct: 1102 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANY 1161
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1162 VVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1206
Score = 49 (22.3 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 33/123 (26%), Positives = 51/123 (41%)
Query: 126 SLGMNNAHN-GMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQP 184
SLG ++ + G S G F + A + S L S+ Y + + S P
Sbjct: 708 SLGFGSSSSLGATLGS-ALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSS----SLTP 762
Query: 185 SGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVST 240
G S YN G + +S+ P + PSQGP P P ++ GSS ++ ++
Sbjct: 763 IGH----SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN 815
Query: 241 GEG 243
G G
Sbjct: 816 GSG 818
Score = 45 (20.9 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 133 HNGMDKNSYGHGKFSSFEAQPSMNSPG 159
+N ++ NS FS AQP+ S G
Sbjct: 684 NNSLNSNSQSSSLFSQGSAQPANTSLG 710
Score = 37 (18.1 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 771 LSFSSSPGPVG 781
>WB|WBGene00004245 [details] [associations]
symbol:puf-9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0002009 GO:GO:0005737 GO:GO:0040010 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0040017 GO:GO:0003730 GO:GO:0006402 EMBL:FO081143
eggNOG:COG5099 HSSP:Q14671 GeneTree:ENSGT00680000100664 PIR:T26218
RefSeq:NP_508980.2 ProteinModelPortal:Q23191 SMR:Q23191
STRING:Q23191 PaxDb:Q23191 EnsemblMetazoa:W06B11.2.1
EnsemblMetazoa:W06B11.2.2 GeneID:180850 KEGG:cel:CELE_W06B11.2
UCSC:W06B11.2 CTD:180850 WormBase:W06B11.2 HOGENOM:HOG000020400
InParanoid:Q23191 OMA:TIKPHIA NextBio:911254 Uniprot:Q23191
Length = 703
Score = 862 (308.5 bits), Expect = 5.6e-90, Sum P(2) = 5.6e-90
Identities = 179/389 (46%), Positives = 259/389 (66%)
Query: 387 PQGLNRNTGIYSGWQGQRTF--EGQRTFEDSKKHSFLEEL------KSSNAQKFE-LSDI 437
P G+ N G+ + W QR+F Q+ ++ +F + + N Q + L DI
Sbjct: 286 PNGMG-NGGVMNDWS-QRSFGMPQQQAQQNGLPPNFSQNPPRRRGPEDPNGQTPKTLQDI 343
Query: 438 AGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHG 497
++EF+ DQHGSRFIQQKLE S +K ++F VL +A +LMTDVFGNYVIQKFFE G
Sbjct: 344 KNNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNYVIQKFFEFG 403
Query: 498 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 557
+ +QR +L + G V+ L+LQMYGCRVIQKALE +E + +++ E++G V++CV+DQN
Sbjct: 404 NNEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCVKDQN 463
Query: 558 GNHVIQKCIECVPAEKIEFIISAFR----GQVATLSTHPYGCRVIQRVLEHCSDEQQGQC 613
GNHVIQK IE V E+++FII AF V TLS HPYGCRVIQRVLE+C++EQ+ Q
Sbjct: 464 GNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYCNEEQK-QP 522
Query: 614 IVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK-LAGKIVQMSQHKYASNVVE 672
++D + L DQYGNYV QHV+E G ++ QI+ ++ +++ +QHK+ASNV+E
Sbjct: 523 VLDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFASNVIE 582
Query: 673 KCLEYGDTAERELLIEEILGQ-SEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISR 731
KCL +G AER L+I+++ G ++ + LL MMKD +ANYVVQK+L+ + + R+ +
Sbjct: 583 KCLTFGGHAERNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDVADPQHRKKITLT 642
Query: 732 IRVHCDALKKYTYGKHIVARFEQLYGEGA 760
I+ H L+KY +GKHI+ + E+ + + A
Sbjct: 643 IKPHIATLRKYNFGKHILLKLEKYFAKQA 671
Score = 55 (24.4 bits), Expect = 5.6e-90, Sum P(2) = 5.6e-90
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 140 SYGHGKFSSFE-AQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQPSGAGVYPSQ 193
S G G FS+ + A PS PG+ + + MP N + SG+ +P Q
Sbjct: 145 SGGAGIFSTMQQADPSNGMPGMAAE-FVNNENGMPGPNGMHQQAMISGSPPFPYQ 198
Score = 37 (18.1 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 302 ADPSSKKEPIVAAYMGDQNLQSSLNG 327
ADPS+ + A ++ ++N NG
Sbjct: 157 ADPSNGMPGMAAEFVNNENGMPGPNG 182
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 166/331 (50%), Positives = 229/331 (69%)
Query: 427 SNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS-KLMTDV 484
+N Q+ FELSDI G +V FS DQHGSRFIQQKL + EE+ +VF+E+ + +LM D+
Sbjct: 386 ANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDI 445
Query: 485 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 544
FGNYV+QK+FE G+ Q++ L ++ G V LSLQMYGCRV+QKA+E I + QL+ E
Sbjct: 446 FGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQE 505
Query: 545 LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH 604
LDGHV+ CV DQNGNHVIQK IEC+ ++FI+ A R Q+ LS HPYGCRVIQR +EH
Sbjct: 506 LDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEH 565
Query: 605 CSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQH 664
C E++ I++E+L L QDQYGNYV QH+L G ++ I + ++ +S H
Sbjct: 566 CHSERK--LIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCH 623
Query: 665 KYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLV-MMKDQYANYVVQKILEKCNEK 723
K+ASNVVE+C+ Y +R ++ +I+ + EN ++L+ MMKD+YANYV+QK+L+ E+
Sbjct: 624 KFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEE 683
Query: 724 LRETLISRIRVHCDALKKYTYGKHIVARFEQ 754
R+ LIS I H LKK+TYGKH++ E+
Sbjct: 684 ERDLLISYIYPHISVLKKFTYGKHLIMSVER 714
Score = 284 (105.0 bits), Expect = 2.0e-21, P = 2.0e-21
Identities = 71/256 (27%), Positives = 127/256 (49%)
Query: 423 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 482
E + ++ LS I G + S+ +G R +Q+ +E+ S E +V + +E+ H +
Sbjct: 456 EFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDCVC 515
Query: 483 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 542
D GN+VIQK E + + L Q+ LS YGCRVIQ+A+E H + +L+
Sbjct: 516 DQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIE--HCHSERKLI 573
Query: 543 LE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRV 601
+E L H+++ +DQ GN+V+Q + ++I + LS H + V++R
Sbjct: 574 IEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERC 633
Query: 602 LEHCSDEQQGQC---IVDEILESAFALA---QDQYGNYVTQHVLERGKSYERTQILSKLA 655
+ + SD + + I+ E E+ L +D+Y NYV Q +L+ ER ++S +
Sbjct: 634 ISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYIY 693
Query: 656 GKIVQMSQHKYASNVV 671
I + + Y +++
Sbjct: 694 PHISVLKKFTYGKHLI 709
Score = 283 (104.7 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 75/257 (29%), Positives = 134/257 (52%)
Query: 496 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG-HVMRCVR 554
H + + EL++ ++G V+ S +G R IQ+ L ++ + E+ ++ +
Sbjct: 385 HANKQRHFELSD-ILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMM 443
Query: 555 DQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCI 614
D GN+V+QK E ++ + ++S +G V +LS YGCRV+Q+ +E+ S E Q Q +
Sbjct: 444 DIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQ-L 502
Query: 615 VDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKC 674
+ E+ DQ GN+V Q +E + IL L +I +S H Y V+++
Sbjct: 503 IQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRA 562
Query: 675 LEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRV 734
+E+ + ER+L+IEE+L ++L + +DQY NYVVQ IL +E ++ + +
Sbjct: 563 IEHCHS-ERKLIIEELL------PHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMID 615
Query: 735 HCDALKKYTYGKHIVAR 751
H L + + ++V R
Sbjct: 616 HLLFLSCHKFASNVVER 632
Score = 235 (87.8 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 72/292 (24%), Positives = 139/292 (47%)
Query: 446 VDQHGSRFIQQK----LEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQ 501
++Q+G F+QQ L H + + + ++L + TD G+ IQ+ + ++
Sbjct: 367 INQNGQEFLQQSRVLYLFHANKQRHFEL-SDILGNVVLFSTDQHGSRFIQQKLATATEEE 425
Query: 502 RKELAEKLVG-QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH 560
R+ + +++ L L + ++G V+QK E QK L+ ++ GHV G
Sbjct: 426 REAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCR 485
Query: 561 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILE 620
V+QK IE + E +I G V G VIQ+ +E C D Q I+ +
Sbjct: 486 VVQKAIEYISPEHQVQLIQELDGHVLDCVCDQNGNHVIQKAIE-CIDTGHLQFILRALRP 544
Query: 621 SAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDT 680
L+ YG V Q +E S ER I+ +L I++++Q +Y + VV+ L G
Sbjct: 545 QIHVLSAHPYGCRVIQRAIEHCHS-ERKLIIEELLPHILKLTQDQYGNYVVQHILRTGSE 603
Query: 681 AERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRI 732
++++ + + ++ D+LL + ++A+ VV++ + ++ R ++++I
Sbjct: 604 SDKKYIFDLMI------DHLLFLSCHKFASNVVERCISYISDVDRRRILNKI 649
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 752 (269.8 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
Identities = 173/413 (41%), Positives = 257/413 (62%)
Query: 363 ASPVLPSS-PVGSTSQLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFL 421
A+P L +S P +TS+ + N + +S Q + Q+T+ S L
Sbjct: 462 ANPYLENSIPTKNTSKKNASSKSNESTANNHKSHSHSHPHSQSLQQQQQTYHRSP---LL 518
Query: 422 EELKSSNAQK-----FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPH 476
E+L++S++ K L DI G +EF DQHGSRFIQ++L A EK +F E+
Sbjct: 519 EQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDD 578
Query: 477 ASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELH 536
A +L DVFGNYVIQKFFE GS Q+ L ++ G + LSLQMY CRVIQKALE I+ +
Sbjct: 579 AIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSN 638
Query: 537 QKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCR 596
Q+ +LVLEL V++ ++DQNGNHVIQK IE +P EK+ FI+S+ G + LSTH YGCR
Sbjct: 639 QRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCR 698
Query: 597 VIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGK--SYE----RTQI 650
VIQR+LE S E Q + I++E+ + L QDQYGNYV Q+VL++ + + E + +I
Sbjct: 699 VIQRLLEFGSSEDQ-ESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEI 757
Query: 651 LSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE------ENDN-LLVM 703
+ +A +V+ S+HK+ASNVVEK + YG +++L+I +IL + + E+D+ +++M
Sbjct: 758 IETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILM 817
Query: 704 MKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKY-TYGKHIVARFEQL 755
+KDQ+ANYV+QK++ + ++ ++ IR + D L K + G +A E+L
Sbjct: 818 IKDQFANYVIQKLVNVSEGEGKKLIVIAIRAYLDKLNKSNSLGNRHLASVEKL 870
Score = 57 (25.1 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
Identities = 31/119 (26%), Positives = 54/119 (45%)
Query: 127 LGMNNAHNG-MDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQPS 185
L N ++G + +S G +S E++ + + P A+ + PS NP + +
Sbjct: 230 LNRNTTNSGSLYHSSSNSGSSASLESE-NAHYPKRNIWNVANTPVFRPSNNP--AAVGAT 286
Query: 186 GAGVYPSQYNVGGYALNSALFPPFVAGYPS----QGPVPMPF-DATSGSSFNIRTTSVS 239
+ P+Q + G A N+ FPP++ G+P QGP F + GS N + +S
Sbjct: 287 NVAL-PNQQD--GPANNN--FPPYMNGFPPNQFHQGPHYQNFPNYLIGSPSNFISQMIS 340
Score = 50 (22.7 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
Identities = 26/105 (24%), Positives = 40/105 (38%)
Query: 226 TSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFGDAYN 285
+S SS + T++S G P ST +KF+G+ G Q D + + N
Sbjct: 73 SSESSPIFKKTALSVGTAPPF--STNSKKFFGNGGNYYQYRSTDTASLSSASYN-----N 125
Query: 286 ASVQHRLASSGVNGALADPSSKKEPIVAA---YMGDQNLQSSLNG 327
H A+ G N + + +A Y G+ N S G
Sbjct: 126 YHTHHTAANLGKNNKVNHLLGQYSASIAGPVYYNGNDNNNSGGEG 170
Score = 41 (19.5 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 157 SPGLTPPLYASAGTYMPSGNPFYPSFQPSGAGVYPSQYN 195
S G PP ++ + +G +Y A + + YN
Sbjct: 86 SVGTAPPFSTNSKKFFGNGGNYYQYRSTDTASLSSASYN 124
>CGD|CAL0000998 [details] [associations]
symbol:PUF3 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0051646 "mitochondrion
localization" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000998 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 EMBL:AACQ01000198
EMBL:AACQ01000197 RefSeq:XP_711443.1 RefSeq:XP_711460.1
ProteinModelPortal:Q59P09 GeneID:3646939 GeneID:3646950
KEGG:cal:CaO19.1795 KEGG:cal:CaO19.9361 Uniprot:Q59P09
Length = 929
Score = 767 (275.1 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 161/365 (44%), Positives = 238/365 (65%)
Query: 391 NRNTGIYSGWQGQR--TFEGQR-TFEDSKKHSF----LEELKSSNAQKFELSDIAGRIVE 443
N ++G G +R F+G+ T H + LEE++S N + ++L DI G +E
Sbjct: 533 NNSSGSTPGVGSKRKGNFKGKNNTTNGGGNHIYRSPLLEEVRS-NPKPYQLKDIYGHAIE 591
Query: 444 FSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRK 503
F+ DQHGSRFIQQKL + EEK ++F E+ + +LMTDVFGNYVIQK+FE+G+ Q++
Sbjct: 592 FTKDQHGSRFIQQKLPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKYFEYGTTTQKQ 651
Query: 504 ELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 563
L E ++G + LSLQMYGCRV+Q+ALE I+ + +++ EL H++ C +DQNGNHVIQ
Sbjct: 652 VLLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLRIIEELKDHILICCKDQNGNHVIQ 711
Query: 564 KCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESA 622
K IE + P +I +I+++ Q+ LSTHPYGCRVIQR+LE+ SD + I+ ++
Sbjct: 712 KSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEY-SDIDDQKLILSQLNNFL 770
Query: 623 FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAE 682
+ L DQYGNYV QH+LE G E+ IL + G +VQ S+HK+ASNV+EKC+++GD +
Sbjct: 771 YYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSKHKFASNVIEKCIKFGDINQ 830
Query: 683 RELLIEE-------ILGQSE-------ENDNLLVMMKDQYANYVVQKILEKCNEKLRETL 728
R+ ++ E ILG + E+ L +M+KDQ+ NYV+QK++E + R+ L
Sbjct: 831 RKRILHEVMLGNETILGDDDIDGEPVKEDSPLALMVKDQFGNYVIQKLVEAFDGDERKLL 890
Query: 729 ISRIR 733
I +I+
Sbjct: 891 IIKIK 895
Score = 292 (107.8 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 70/268 (26%), Positives = 135/268 (50%)
Query: 486 GNYVIQK-FFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 544
GN++ + E + + + + G + + +G R IQ+ L +K + E
Sbjct: 561 GNHIYRSPLLEEVRSNPKPYQLKDIYGHAIEFTKDQHGSRFIQQKLPEATEEEKETIFNE 620
Query: 545 LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH 604
+ + D GN+VIQK E + + ++ + G + LS YGCRV+QR LE
Sbjct: 621 IWEISYELMTDVFGNYVIQKYFEYGTTTQKQVLLESMIGHIHELSLQMYGCRVVQRALEA 680
Query: 605 CSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQ-ILSKLAGKIVQMSQ 663
+E Q + I++E+ + +DQ GN+V Q +E+ K + + + IL+ L +I +S
Sbjct: 681 IDNEGQLR-IIEELKDHILICCKDQNGNHVIQKSIEKIKPFSQIRYILTSLDNQIYHLST 739
Query: 664 HKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEK 723
H Y V+++ LEY D +++L++ ++ N+ L ++ DQY NYV+Q ILE ++
Sbjct: 740 HPYGCRVIQRLLEYSDIDDQKLILSQL------NNFLYYLILDQYGNYVIQHILENGTQE 793
Query: 724 LRETLISRIRVHCDALKKYTYGKHIVAR 751
+E ++ + K+ + +++ +
Sbjct: 794 EKEPILEIVLGSVVQFSKHKFASNVIEK 821
Score = 130 (50.8 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 48/187 (25%), Positives = 86/187 (45%)
Query: 421 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 480
L E + QK LS + + +DQ+G+ IQ LE+ + EEK + + VL +
Sbjct: 750 LLEYSDIDDQKLILSQLNNFLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQF 809
Query: 481 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 540
F + VI+K + G +QRK + ++ M G I ++ +
Sbjct: 810 SKHKFASNVIEKCIKFGDINQRKRILHEV----------MLGNETILGDDDI-----DGE 854
Query: 541 LVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQR 600
V E D + V+DQ GN+VIQK +E ++ + +I + ++ S + R I+
Sbjct: 855 PVKE-DSPLALMVKDQFGNYVIQKLVEAFDGDERKLLIIKIKKCLSLSSNNLASIRNIRN 913
Query: 601 VLEHCSD 607
+++H S+
Sbjct: 914 IIDHVSE 920
Score = 41 (19.5 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 16/52 (30%), Positives = 19/52 (36%)
Query: 135 GMDKNSYGHGKFSSFEAQP-SM--NSPGLTPPLYASAGTYMPSGNPFYPSFQ 183
G+ + F P SM +SP L PP A G P P P Q
Sbjct: 433 GLMNRQFSPASFMFHPFNPYSMYQSSPPLVPPEAALGGMASPPPPPPLPQQQ 484
Score = 37 (18.1 bits), Expect = 4.6e-78, Sum P(2) = 4.6e-78
Identities = 16/49 (32%), Positives = 19/49 (38%)
Query: 139 NSYGHGKFSSFEAQPSMNSPGLTPP-LYASAGTYMPSGN-PFYPSFQPS 185
N+ G +S P P PP L S + M GN P P PS
Sbjct: 315 NASNSGGANSISPPPPFMIPSPPPPFLDPSVYSMMYGGNFPPPPPPPPS 363
Score = 37 (18.1 bits), Expect = 4.6e-78, Sum P(2) = 4.6e-78
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 210 VAGYPSQGPVPMPFDATSGSSFNIRTTSV-STGEGIPHIGSTQHQKFYGH 258
+ Y + P+ + S N T ++ ST H +T++Q Y H
Sbjct: 219 IDNYNNNSPIQTAAALSINSDLNSDTVNINSTTTNSNH-DATKNQGNYSH 267
>ASPGD|ASPL0000000865 [details] [associations]
symbol:AN6587 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000110 eggNOG:COG5099 OrthoDB:EOG4RR9RJ
RefSeq:XP_664191.1 ProteinModelPortal:Q5AYP3
EnsemblFungi:CADANIAT00007365 GeneID:2870653 KEGG:ani:AN6587.2
HOGENOM:HOG000201252 OMA:SHKSSPQ Uniprot:Q5AYP3
Length = 849
Score = 759 (272.2 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 153/332 (46%), Positives = 223/332 (67%)
Query: 430 QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYV 489
++FEL DI G IVEFS DQ+GSRF+QQK+E +++EK VF+E+LP+ +L D+FGNYV
Sbjct: 453 KRFELKDIYGHIVEFSGDQYGSRFLQQKIETANSDEKDRVFREILPNFLQLAQDIFGNYV 512
Query: 490 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHV 549
QK +EHG+ Q+K + E + +V+ LSL YGCRV+QKALE + Q++ LV E+ V
Sbjct: 513 AQKLYEHGNQTQKKMMTEDMRSKVVKLSLSPYGCRVVQKALEHVLTDQQAWLVREIQPQV 572
Query: 550 MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQ 609
+ CV Q+GNHVIQK E VP + + ++ +FRGQV STH YGCRVIQR+LE C D
Sbjct: 573 LECVESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQVERQSTHSYGCRVIQRMLEFCEDVD 632
Query: 610 QGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASN 669
+ + I+ EI A L +DQYGNYV QH+++ G+ +R+ ++ + K++ S+HK+ASN
Sbjct: 633 R-RFILAEIRACAPRLIEDQYGNYVIQHIIQSGEEEDRSFMIEMVKQKLLWYSKHKFASN 691
Query: 670 VVEKCLEYGDTAERELLIEEILGQSEENDNLLV-MMKDQYANYVVQKILEKCNEKLRETL 728
VVEK +E+G+ A+R+ +I + ++E ++ L+ +M DQY NYV QK+L + R L
Sbjct: 692 VVEKSIEFGNEAQRQDIITRLTAKTEGHETQLIELMADQYGNYVFQKVLGHLSGVERAAL 751
Query: 729 ISRIRVHCDALKKYTYGKHIVARFEQLYGEGA 760
+ RI+ LKK GK I A E+L G+ +
Sbjct: 752 VDRIKPLLVHLKKSNCGKQIAA-IEKLIGDSS 782
Score = 302 (111.4 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 77/270 (28%), Positives = 130/270 (48%)
Query: 421 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 480
L E + +K D+ ++V+ S+ +G R +Q+ LEH +++ + +E+ P +
Sbjct: 516 LYEHGNQTQKKMMTEDMRSKVVKLSLSPYGCRVVQKALEHVLTDQQAWLVREIQPQVLEC 575
Query: 481 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 540
+ GN+VIQK FE+ K L + GQV S YGCRVIQ+ LE E +
Sbjct: 576 VESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQVERQSTHSYGCRVIQRMLEFCEDVDRRF 635
Query: 541 LVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQR 600
++ E+ R + DQ GN+VIQ I+ E F+I + ++ S H + V+++
Sbjct: 636 ILAEIRACAPRLIEDQYGNYVIQHIIQSGEEEDRSFMIEMVKQKLLWYSKHKFASNVVEK 695
Query: 601 VLEHCSDEQQGQCIVDEILESA-------FALAQDQYGNYVTQHVLERGKSYERTQILSK 653
+E +E Q Q I+ + L DQYGNYV Q VL ER ++ +
Sbjct: 696 SIEF-GNEAQRQDIITRLTAKTEGHETQLIELMADQYGNYVFQKVLGHLSGVERAALVDR 754
Query: 654 LAGKIVQMSQHKYASNV--VEKCLEYGDTA 681
+ +V + + + +EK + GD++
Sbjct: 755 IKPLLVHLKKSNCGKQIAAIEKLI--GDSS 782
Score = 219 (82.2 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 68/283 (24%), Positives = 134/283 (47%)
Query: 420 FLEE-LKSSNAQKFE--LSDIAGRIVEFSVDQHGSRFIQQKL-EHCSAEEKVSVFKEVLP 475
FL++ ++++N+ + + +I ++ + D G+ ++ QKL EH + +K + +++
Sbjct: 476 FLQQKIETANSDEKDRVFREILPNFLQLAQDIFGN-YVAQKLYEHGNQTQKKMMTEDMRS 534
Query: 476 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL 535
KL +G V+QK EH DQ+ L ++ QVL +G VIQK E +
Sbjct: 535 KVVKLSLSPYGCRVVQKALEHVLTDQQAWLVREIQPQVLECVESQHGNHVIQKVFEYVPT 594
Query: 536 HQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVATLSTHPYG 594
LV G V R G VIQ+ +E C ++ FI++ R L YG
Sbjct: 595 QYTKGLVDSFRGQVERQSTHSYGCRVIQRMLEFCEDVDR-RFILAEIRACAPRLIEDQYG 653
Query: 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
VIQ +++ +E+ +++ + + ++ ++ + V + +E G +R I+++L
Sbjct: 654 NYVIQHIIQS-GEEEDRSFMIEMVKQKLLWYSKHKFASNVVEKSIEFGNEAQRQDIITRL 712
Query: 655 AGK-------IVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 690
K ++++ +Y + V +K L + ER L++ I
Sbjct: 713 TAKTEGHETQLIELMADQYGNYVFQKVLGHLSGVERAALVDRI 755
Score = 40 (19.1 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 370 SPVGSTSQLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTF 412
SP G TS +G R + R+ G+ +G G + Q F
Sbjct: 135 SPAGETSAMGNR--VLFNNNDRRSVGL-TGTAGTAAYPAQSGF 174
>WB|WBGene00004244 [details] [associations]
symbol:puf-8 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0040022 "feminization of hermaphroditic
germ-line" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007140 "male meiosis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007283 GO:GO:0003723
GO:GO:0042127 GO:GO:0007140 GO:GO:0040027 GO:GO:0040020
GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00680000100664 EMBL:FO080733 PIR:T15717
RefSeq:NP_495523.3 ProteinModelPortal:Q09487 SMR:Q09487
DIP:DIP-27165N MINT:MINT-1110716 STRING:Q09487 PaxDb:Q09487
EnsemblMetazoa:C30G12.7 GeneID:174197 KEGG:cel:CELE_C30G12.7
UCSC:C30G12.7 CTD:174197 WormBase:C30G12.7 InParanoid:Q09487
OMA:KDSIFDE NextBio:882961 Uniprot:Q09487
Length = 535
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 136/336 (40%), Positives = 214/336 (63%)
Query: 430 QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAE-EKVSVFKEVLPHASKLMTDVFGNY 488
+ +LSDI G +++F+ DQ GSRFIQQ+L EK S+F EV+ +A +L+ D+FGNY
Sbjct: 188 KNLKLSDIRGALLKFAKDQVGSRFIQQELASSKDRFEKDSIFDEVVSNADELVDDIFGNY 247
Query: 489 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 548
V+QKFFE+G L + ++ +V + QMY CRV+QKALE I + +++ ++
Sbjct: 248 VVQKFFEYGEERHWARLVDAIIDRVPEYAFQMYACRVLQKALEKINEPLQIKILSQIRHV 307
Query: 549 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF---RGQVATLSTHPYGCRVIQRVLEHC 605
+ RC++DQNGNHV+QK IE V + ++FI+ + +S PYGCRV+QR LEHC
Sbjct: 308 IHRCMKDQNGNHVVQKAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHC 367
Query: 606 SDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHK 665
S Q + ++ +I + +A +QYGNYV QHV+E G +R I+++++ + + + HK
Sbjct: 368 SPSQT-KPVIGQIHKRFDEIANNQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLFEFATHK 426
Query: 666 YASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLV-MMKDQYANYVVQKILEKCNEKL 724
Y+SNV+EKCLE G + +++ E + ++V MMKDQYANYVVQK+ ++ +
Sbjct: 427 YSSNVIEKCLEQGAVYHKSMIVGAACHHQEGSVPIVVQMMKDQYANYVVQKMFDQVTSEQ 486
Query: 725 RETLISRIRVHCDALKKYTYGKHIVARFEQLYGEGA 760
R LI +R H L+++ +GKHI+A+ E+ + + A
Sbjct: 487 RRELILTVRPHIPVLRQFPHGKHILAKLEKYFQKPA 522
Score = 163 (62.4 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 50/185 (27%), Positives = 85/185 (45%)
Query: 570 PAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQ 629
PA +S RG + + G R IQ+ L D + I DE++ +A L D
Sbjct: 184 PAMMKNLKLSDIRGALLKFAKDQVGSRFIQQELASSKDRFEKDSIFDEVVSNADELVDDI 243
Query: 630 YGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEE 689
+GNYV Q E G+ +++ + ++ + + YA V++K LE E L +
Sbjct: 244 FGNYVVQKFFEYGEERHWARLVDAIIDRVPEYAFQMYACRVLQKALE----KINEPLQIK 299
Query: 690 ILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYT---YGK 746
IL Q + MKDQ N+VVQK +EK + + + ++ + + + + + YG
Sbjct: 300 ILSQIRHVIHRC--MKDQNGNHVVQKAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPYGC 357
Query: 747 HIVAR 751
+V R
Sbjct: 358 RVVQR 362
>ZFIN|ZDB-GENE-081031-76 [details] [associations]
symbol:pum2 "pumilio homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 ZFIN:ZDB-GENE-081031-76
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01062788 EMBL:CABZ01062789
EMBL:CABZ01062790 EMBL:CU468963 IPI:IPI00864826
Ensembl:ENSDART00000086578 Bgee:F1R4Q6 Uniprot:F1R4Q6
Length = 1206
Score = 658 (236.7 bits), Expect = 3.6e-67, Sum P(2) = 3.6e-67
Identities = 138/281 (49%), Positives = 191/281 (67%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
S + LE+ +++ +L D+ G +VEFS DQHGSRFIQQKLE ++ E+ VF E+L
Sbjct: 821 SGRSRLLEDFRNNRFPNLQLRDLPGHMVEFSQDQHGSRFIQQKLERATSAERQMVFGEIL 880
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 881 QAAYQLMTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 940
Query: 535 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 592
Q+ S +V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 941 SDQQVISDIVRELDGHVLKCVKDQNGNHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHP 1000
Query: 593 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 652
YGCRVIQR+LEHC+ EQ I++E+ + + +Q G T L+ +++ +I S
Sbjct: 1001 YGCRVIQRILEHCTQEQTLP-ILEELHQHS-----EQLGQKNTSVQLK--VTFKGLRICS 1052
Query: 653 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ 693
+ + +Y + V++ LE+G ++ ++ E+ G+
Sbjct: 1053 -----FDLLFKDQYGNYVIQHVLEHGRPEDKSKIVAEVRGK 1088
Score = 445 (161.7 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 117/355 (32%), Positives = 189/355 (53%)
Query: 413 EDSKKHSFLEELKSSNAQKFELSDIAGRIVEFS----VDQHGSRFIQQKLEHCSAEEKVS 468
+D F+++ K A E + G I++ + D G+ IQ+ E SA++K++
Sbjct: 852 QDQHGSRFIQQ-KLERATSAERQMVFGEILQAAYQLMTDVFGNYVIQKFFEFGSADQKLA 910
Query: 469 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVI 526
+ + H L ++G VIQK E S DQ+ ++ +L G VL G V+
Sbjct: 911 LATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLKCVKDQNGNHVV 970
Query: 527 QKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFI--ISAFR 582
QK +E ++ Q Q +++ G V G VIQ+ +E C + + + +
Sbjct: 971 QKCIECVQ-PQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQEQTLPILEELHQHS 1029
Query: 583 GQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERG 642
Q+ +T +V + L CS + L +DQYGNYV QHVLE G
Sbjct: 1030 EQLGQKNTSVQ-LKVTFKGLRICSFD---------------LLFKDQYGNYVIQHVLEHG 1073
Query: 643 KSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLL 701
+ ++++I++++ GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q + + L
Sbjct: 1074 RPEDKSKIVAEVRGKVLALSQHKFASNVVEKCVIHSSRAERALLIDEVCCQKDGPHSALY 1133
Query: 702 VMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 756
MMKDQYANYVVQ++++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1134 TMMKDQYANYVVQRMIDMAEPAQRKIIMHKIRPHIATLRKYTYGKHILAKLEKYY 1188
Score = 61 (26.5 bits), Expect = 3.6e-67, Sum P(2) = 3.6e-67
Identities = 28/92 (30%), Positives = 40/92 (43%)
Query: 139 NSYGHGKFSSFEAQPSMNSPGLTPP--LYASAGTY-------MPSGNPFYPSFQPSGAGV 189
NS G+ S +SP LTPP L +S G+ +P+G+ Y S P
Sbjct: 730 NSLGYSSSPSPIGLTPGHSP-LTPPPSLPSSHGSSSSIHLGGLPNGSGRYISAAPGAEAK 788
Query: 190 YPSQYNVGG-YALNSALFPPFVAGYPSQGPVP 220
Y S + ++ +S LFPP A Y +P
Sbjct: 789 YRSSGSTSSLFSSSSQLFPPPRARYSRSDVMP 820
Score = 40 (19.1 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 142 GHGKFSSFE--AQPSMNSPGLTPPLYASAGTYMPSGNPFYP--SFQPSG 186
G G++ S A+ S G T L++S+ P Y PSG
Sbjct: 774 GSGRYISAAPGAEAKYRSSGSTSSLFSSSSQLFPPPRARYSRSDVMPSG 822
Score = 38 (18.4 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 37 AVSFSSSPCPDGTETSRNP 55
++ +SSSP P G +P
Sbjct: 731 SLGYSSSPSPIGLTPGHSP 749
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 597 (215.2 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 125/353 (35%), Positives = 200/353 (56%)
Query: 397 YSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQ 456
Y G R E Q S++H+ + + S + I DQHG R++Q+
Sbjct: 197 YYGNGNYRLVESQPKPVGSRRHADGDSAQLSRFNNHPIEYYRNEIYGLCKDQHGCRYLQR 256
Query: 457 KLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPL 516
KLE + ++ +F E H +LMTD FGNY+ QK E+ + +QR L K Q++ +
Sbjct: 257 KLEERNDDQLQMIFAETHSHVIELMTDPFGNYLCQKLLEYSNDEQRTVLVNKAAPQLVKI 316
Query: 517 SLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIE 575
+L +G R +QK +E I +++Q V++ L HV+ V+D NGNHVIQKC+ + AEK +
Sbjct: 317 ALNQHGTRALQKMIEFISTEEQTQTVIDALKDHVVELVQDLNGNHVIQKCLNRLTAEKSQ 376
Query: 576 FIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVT 635
FI A Q T+ TH +GC V+QR ++H S Q+ + ++++I E+AFAL QD +GNYV
Sbjct: 377 FIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRAR-LIEQITENAFALVQDPFGNYVV 435
Query: 636 QHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE 695
Q++L+ ++ + + +I ++S+HK++SNV+EKCL D R +IEE+L
Sbjct: 436 QYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIEKCLRTADEEMRRQMIEEMLA--- 492
Query: 696 ENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHI 748
D L M++D YANYVVQ ++ + R ++ I +L+ +G+ I
Sbjct: 493 -GDELEKMLRDSYANYVVQTAMDYADPATRARIVKYIEPILPSLRGTPHGRRI 544
Score = 283 (104.7 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 63/241 (26%), Positives = 122/241 (50%)
Query: 512 QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPA 571
++ L +GCR +Q+ LE Q + E HV+ + D GN++ QK +E
Sbjct: 240 EIYGLCKDQHGCRYLQRKLEERNDDQLQMIFAETHSHVIELMTDPFGNYLCQKLLEYSND 299
Query: 572 EKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYG 631
E+ +++ Q+ ++ + +G R +Q+++E S E+Q Q ++D + + L QD G
Sbjct: 300 EQRTVLVNKAAPQLVKIALNQHGTRALQKMIEFISTEEQTQTVIDALKDHVVELVQDLNG 359
Query: 632 NYVTQHVLERGKSYERTQILSKLAG-KIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 690
N+V Q L R + E++Q + G + V + H++ V+++C+++ A+R LIE+I
Sbjct: 360 NHVIQKCLNR-LTAEKSQFIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRARLIEQI 418
Query: 691 LGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVA 750
+N +++D + NYVVQ IL+ + E L L K+ + +++
Sbjct: 419 ------TENAFALVQDPFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIE 472
Query: 751 R 751
+
Sbjct: 473 K 473
Score = 161 (61.7 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 42/184 (22%), Positives = 87/184 (47%)
Query: 421 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 480
L L + +Q F + + V +HG +Q+ ++H S ++ + +++ +A L
Sbjct: 367 LNRLTAEKSQ-FIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRARLIEQITENAFAL 425
Query: 481 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 540
+ D FGNYV+Q + + L + + ++ LS + VI+K L + + Q
Sbjct: 426 VQDPFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIEKCLRTADEEMRRQ 485
Query: 541 LVLE-LDGHVM-RCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRV 597
++ E L G + + +RD N+V+Q ++ PA + I+ + +L P+G R+
Sbjct: 486 MIEEMLAGDELEKMLRDSYANYVVQTAMDYADPATRAR-IVKYIEPILPSLRGTPHGRRI 544
Query: 598 IQRV 601
++
Sbjct: 545 GSKI 548
Score = 38 (18.4 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 128 GMNNAHNGMDKNSY-GHGKFSSFEAQP 153
G N N+Y G+G + E+QP
Sbjct: 184 GQYNQSTPFAANAYYGNGNYRLVESQP 210
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 558 (201.5 bits), Expect = 2.9e-55, Sum P(2) = 2.9e-55
Identities = 119/325 (36%), Positives = 183/325 (56%)
Query: 427 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 486
+N + + G I DQHG RF+Q+KLE + +FKEV + +LMTD FG
Sbjct: 702 ANKTYTSIDQVMGSIYPLCRDQHGCRFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFG 761
Query: 487 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-L 545
NY+ QK EH + QR + EK+ ++ +S+ M+G R +QK +E + ++ QL+ L
Sbjct: 762 NYLCQKLLEHCNDRQRLTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSL 821
Query: 546 DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR--GQVATLSTHPYGCRVIQRVLE 603
V+ ++D NGNHVIQKC+ + + +FI A G ++TH +GC V+QR ++
Sbjct: 822 KDSVVPLIQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCID 881
Query: 604 HCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQ 663
H S+ Q+ Q ++ E++ ++ L QD YGNYV Q+VL+ T++ + G + ++
Sbjct: 882 HASESQKLQ-LIQEVIANSLVLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILAT 940
Query: 664 HKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEK 723
K++SNVVEKCL D R LI+E++ + DNLL +++D YANYV+Q L
Sbjct: 941 QKFSSNVVEKCLHVADAITRGYLIQEVI----DYDNLLHLLQDPYANYVIQTSLTISEPH 996
Query: 724 LRETLISRIRVHCDALKKYTYGKHI 748
L+ IR H LK YGK I
Sbjct: 997 QHTKLVEAIRPHLPLLKNTPYGKRI 1021
Score = 267 (99.0 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 62/248 (25%), Positives = 128/248 (51%)
Query: 507 EKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI 566
++++G + PL +GCR +QK LE +L + E+ +++ + D GN++ QK +
Sbjct: 710 DQVMGSIYPLCRDQHGCRFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFGNYLCQKLL 769
Query: 567 E-CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFAL 625
E C +++ II + +S + +G R +Q+++E+ + +Q Q I + +S L
Sbjct: 770 EHCNDRQRLT-IIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKDSVVPL 828
Query: 626 AQDQYGNYVTQHVLERGKSYERTQILSKLA--GKIVQMSQHKYASNVVEKCLEYGDTAER 683
QD GN+V Q L + + I ++ G + ++ H++ V+++C+++ +++
Sbjct: 829 IQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQK 888
Query: 684 ELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYT 743
LI+E++ S LV+++D Y NYVVQ +L+ + L + R H L
Sbjct: 889 LQLIQEVIANS------LVLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILATQK 942
Query: 744 YGKHIVAR 751
+ ++V +
Sbjct: 943 FSSNVVEK 950
Score = 252 (93.8 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 65/262 (24%), Positives = 134/262 (51%)
Query: 427 SNAQKFELSDIAGR-IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS-KLMTDV 484
++ Q+ + + G IV S++ HG+R +Q+ +E+ + E++ + K L + L+ D+
Sbjct: 773 NDRQRLTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKDSVVPLIQDL 832
Query: 485 FGNYVIQKFFEHGSPDQRKELAEKLV--GQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 542
GN+VIQK SP + + + + G + ++ +GC V+Q+ ++ QK QL+
Sbjct: 833 NGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQKLQLI 892
Query: 543 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF-IISAFRGQVATLSTHPYGCRVIQRV 601
E+ + + V+D GN+V+Q ++ +P + + + F G V L+T + V+++
Sbjct: 893 QEVIANSLVLVQDPYGNYVVQYVLD-LPFQGLATEMAKRFVGHVPILATQKFSSNVVEKC 951
Query: 602 LEHCSDEQQGQCIVDEILE--SAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 659
L H +D ++ E+++ + L QD Y NYV Q L + ++ T+++ + +
Sbjct: 952 L-HVADAITRGYLIQEVIDYDNLLHLLQDPYANYVIQTSLTISEPHQHTKLVEAIRPHLP 1010
Query: 660 QMSQHKYASNVVEKCLEYG-DT 680
+ Y + K ++ G DT
Sbjct: 1011 LLKNTPYGKRIQNKIIKEGRDT 1032
Score = 47 (21.6 bits), Expect = 2.9e-55, Sum P(2) = 2.9e-55
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 130 NNAHNGMDKNSYGHGKFSSFEAQPSMNSPGLTP-PLYASAGTYMPS 174
NN++N + N G+ +S +++ P TP P +S + PS
Sbjct: 434 NNSNNNSNNNGNGNSNSNSSNNNNTVH-PARTPTPPQSSGNSTSPS 478
Score = 43 (20.2 bits), Expect = 7.6e-55, Sum P(2) = 7.6e-55
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 151 AQPSMNSPGLTPPLYASAGTYMPS-GNPFYPSFQPSGAGVYP 191
AQ S+ SP +T P+ + + N Y S +YP
Sbjct: 677 AQLSITSPPITDPITSDISKKIDLIANKTYTSIDQVMGSIYP 718
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 531 (192.0 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 117/330 (35%), Positives = 184/330 (55%)
Query: 426 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 485
SS+ L + I+ F DQHG R++Q+ LE + +VF E P+ + LM D F
Sbjct: 335 SSSVASLSLQN--SNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAF 392
Query: 486 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL-HQKSQLVLE 544
GNY+ QK FEH S QR + + +++P+S M+G R +QK ++++ Q S +V
Sbjct: 393 GNYLCQKLFEHASEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNA 452
Query: 545 LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH 604
L +V+ +D NGNHVIQKC+ E +FI A +STH +GC V+QR +H
Sbjct: 453 LRPNVVLLTKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDH 512
Query: 605 CSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQH 664
S Q Q +V+ I+ A L QD +GNYV Q+VLE I+S K+ +S
Sbjct: 513 ASPAQIEQ-LVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQ 571
Query: 665 KYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKL 724
K++SNV+EKC+ + A +E LI E++ + +L +++D +ANYV+Q L+ + K
Sbjct: 572 KFSSNVMEKCIFFAPAAIKEKLISELMDEK----HLPKLLRDSFANYVIQTALDNASVKQ 627
Query: 725 RETLISRIRVHCDALKKYTYGKHIVARFEQ 754
R L+ RI+ ++K G+ I+++ E+
Sbjct: 628 RAELVERIKPLIPSIKNTPCGRRILSKLER 657
Score = 40 (19.1 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 14/64 (21%), Positives = 19/64 (29%)
Query: 107 PSAXXXXXXXXXXXXXXXXSLGMNNAHNGMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYA 166
PSA + ++ NG+ S F S LTP L A
Sbjct: 214 PSASKNFAFTSGSSSTNNSTTSSSSMANGLQSISKHSAAFPLLSNATSFFGENLTPSLAA 273
Query: 167 SAGT 170
S +
Sbjct: 274 STAS 277
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 114/219 (52%), Positives = 149/219 (68%)
Query: 438 AGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHG 497
AG I+EFS DQHGSRFIQ KLE + E+ VF E+L A +LM DVFGNYVIQKFFE G
Sbjct: 1 AGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFG 60
Query: 498 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK--SQLVLELDGHVMRCVRD 555
S +Q+ LAE++ G VL L+LQMYGCRVIQKALE I Q+ +++V ELDGHV++CV+D
Sbjct: 61 SLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 120
Query: 556 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIV 615
QNGNHV+QKCIECV + ++FII AF+GQ YG VIQ VLEH E + + IV
Sbjct: 121 QNGNHVVQKCIECVQPQSLQFIIDAFKGQ------DQYGNYVIQHVLEHGRPEDKSK-IV 173
Query: 616 DEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
EI + L+Q ++ + V + + ER ++ ++
Sbjct: 174 AEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 212
Score = 328 (120.5 bits), Expect = 1.0e-28, P = 1.0e-28
Identities = 78/231 (33%), Positives = 124/231 (53%)
Query: 476 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL 535
H + D G+ IQ E +P +R+ + +++ L + ++G VIQK E L
Sbjct: 3 HIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSL 62
Query: 536 HQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEK--IEFIISAFRGQVATLSTHPY 593
QK L + GHV+ G VIQK +E +P+++ I ++ G V
Sbjct: 63 EQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQN 122
Query: 594 GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK 653
G V+Q+ +E C Q Q I+D AF QDQYGNYV QHVLE G+ ++++I+++
Sbjct: 123 GNHVVQKCIE-CVQPQSLQFIID-----AFK-GQDQYGNYVIQHVLEHGRPEDKSKIVAE 175
Query: 654 LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMM 704
+ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L M
Sbjct: 176 IRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTM 226
Score = 210 (79.0 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 64/223 (28%), Positives = 106/223 (47%)
Query: 511 GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVP 570
G ++ S +G R IQ LE ++ + E+ + + D GN+VIQK E
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGS 61
Query: 571 AEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHC-SDEQQGQCIVDEILESAFALAQDQ 629
E+ + RG V +L+ YGCRVIQ+ LE SD+Q +V E+ +DQ
Sbjct: 62 LEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQ 121
Query: 630 YGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEE 689
GN+V Q +E + I+ G Q +Y + V++ LE+G ++ ++ E
Sbjct: 122 NGNHVVQKCIECVQPQSLQFIIDAFKG------QDQYGNYVIQHVLEHGRPEDKSKIVAE 175
Query: 690 ILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRI 732
I G N+LV+ + ++A+ VV+K + + R LI +
Sbjct: 176 IRG------NVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 212
Score = 192 (72.6 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 60/213 (28%), Positives = 101/213 (47%)
Query: 413 EDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 468
+D F++ LK A E ++I + VD G+ IQ+ E S E+K++
Sbjct: 9 QDQHGSRFIQ-LKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 67
Query: 469 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVI 526
+ + + H L ++G VIQK E DQ+ E+ +L G VL G V+
Sbjct: 68 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 127
Query: 527 QKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQV 585
QK +E ++ Q Q +++ G +DQ GN+VIQ +E E I++ RG V
Sbjct: 128 QKCIECVQ-PQSLQFIIDAFKG------QDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 180
Query: 586 ATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEI 618
LS H + V+++ + H S ++ ++DE+
Sbjct: 181 LVLSQHKFASNVVEKCVTHASRTERA-VLIDEV 212
Score = 179 (68.1 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 54/208 (25%), Positives = 101/208 (48%)
Query: 547 GHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHC 605
GH+M +DQ+G+ IQ +E PAE+ + + + L +G VIQ+ E
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAER-QLVFNEILQAAYQLMVDVFGNYVIQKFFEFG 60
Query: 606 SDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERT--QILSKLAGKIVQMSQ 663
S EQ+ + + I +LA YG V Q LE S ++ +++ +L G +++ +
Sbjct: 61 SLEQK-LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVK 119
Query: 664 HKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEK 723
+ ++VV+KC+E + +I+ GQ DQY NYV+Q +LE +
Sbjct: 120 DQNGNHVVQKCIECVQPQSLQFIIDAFKGQ------------DQYGNYVIQHVLEHGRPE 167
Query: 724 LRETLISRIRVHCDALKKYTYGKHIVAR 751
+ +++ IR + L ++ + ++V +
Sbjct: 168 DKSKIVAEIRGNVLVLSQHKFASNVVEK 195
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 655 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQ 714
AG I++ SQ ++ S ++ LE AER+L+ EIL + + +M D + NYV+Q
Sbjct: 1 AGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQ------LMVDVFGNYVIQ 54
Query: 715 KILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVAR 751
K E + + + L RIR H +L YG ++ +
Sbjct: 55 KFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQK 91
>GENEDB_PFALCIPARUM|PFD0825c [details] [associations]
symbol:PFD0825c "RNA-binding protein of
pumilio/mpt5 family, putative" species:5833 "Plasmodium falciparum"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 117/376 (31%), Positives = 198/376 (52%)
Query: 382 HEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFE-DSKKHSFLEELKSSNAQKFELSDIAGR 440
H + P+ + N Y Q + F+ D +KH+ EE ++S +
Sbjct: 145 HYEKSPEQVIDNKRYYENLPEQVIINKKDMFKNDEEKHN--EE----GQVHIDMSKVMYD 198
Query: 441 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 500
I ++G +I +KL+ + EEK + +L L D++G+YV Q F+
Sbjct: 199 IYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEK 258
Query: 501 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH 560
++ ++ + L+L YGCR+IQK+LE + K ++ EL +++ + QNGNH
Sbjct: 259 YKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNH 318
Query: 561 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILE 620
VIQKC+E +P I+ II+ + LS+H YGCR++QR+ E +EQQ + ++I++
Sbjct: 319 VIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYE-IGNEQQINRLNEQIIK 377
Query: 621 SAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDT 680
L +++YGNYV Q E R I ++ I ++S HKYA N++EK L +
Sbjct: 378 KIH-LIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEY 436
Query: 681 AERELLIEEILGQ-SEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDAL 739
++ +I++I+ S+ DN++ + KD Y N+++QK+L C +K R +I I + D L
Sbjct: 437 KYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTTCRKKERNFIIKTIIENLDKL 496
Query: 740 KKYTYGKHIVARFEQL 755
K TYGK+I+ L
Sbjct: 497 KDETYGKYILRAINNL 512
Score = 126 (49.4 bits), Expect = 0.00018, P = 0.00018
Identities = 38/171 (22%), Positives = 77/171 (45%)
Query: 588 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 647
L H GC I + L+ + E++ + I++ +L +L D YG+YV Q + + +
Sbjct: 202 LCFHKNGCEYIIKKLKEDNKEEK-EIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEKYK 260
Query: 648 TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQ 707
+ + ++ H Y +++K LE + + +E+ ++L+ + Q
Sbjct: 261 ERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKEL------QEDLIKYICHQ 314
Query: 708 YANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLYGE 758
N+V+QK +E + +I+ I + L + YG IV R ++ E
Sbjct: 315 NGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNE 365
>UNIPROTKB|Q8I1R7 [details] [associations]
symbol:PFD0825c "RNA-binding protein of pumilio/mpt5
family, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 117/376 (31%), Positives = 198/376 (52%)
Query: 382 HEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFE-DSKKHSFLEELKSSNAQKFELSDIAGR 440
H + P+ + N Y Q + F+ D +KH+ EE ++S +
Sbjct: 145 HYEKSPEQVIDNKRYYENLPEQVIINKKDMFKNDEEKHN--EE----GQVHIDMSKVMYD 198
Query: 441 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 500
I ++G +I +KL+ + EEK + +L L D++G+YV Q F+
Sbjct: 199 IYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEK 258
Query: 501 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH 560
++ ++ + L+L YGCR+IQK+LE + K ++ EL +++ + QNGNH
Sbjct: 259 YKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNH 318
Query: 561 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILE 620
VIQKC+E +P I+ II+ + LS+H YGCR++QR+ E +EQQ + ++I++
Sbjct: 319 VIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYE-IGNEQQINRLNEQIIK 377
Query: 621 SAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDT 680
L +++YGNYV Q E R I ++ I ++S HKYA N++EK L +
Sbjct: 378 KIH-LIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEY 436
Query: 681 AERELLIEEILGQ-SEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDAL 739
++ +I++I+ S+ DN++ + KD Y N+++QK+L C +K R +I I + D L
Sbjct: 437 KYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTTCRKKERNFIIKTIIENLDKL 496
Query: 740 KKYTYGKHIVARFEQL 755
K TYGK+I+ L
Sbjct: 497 KDETYGKYILRAINNL 512
Score = 126 (49.4 bits), Expect = 0.00018, P = 0.00018
Identities = 38/171 (22%), Positives = 77/171 (45%)
Query: 588 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 647
L H GC I + L+ + E++ + I++ +L +L D YG+YV Q + + +
Sbjct: 202 LCFHKNGCEYIIKKLKEDNKEEK-EIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEKYK 260
Query: 648 TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQ 707
+ + ++ H Y +++K LE + + +E+ ++L+ + Q
Sbjct: 261 ERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKEL------QEDLIKYICHQ 314
Query: 708 YANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLYGE 758
N+V+QK +E + +I+ I + L + YG IV R ++ E
Sbjct: 315 NGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNE 365
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 487 (176.5 bits), Expect = 2.7e-46, P = 2.7e-46
Identities = 116/332 (34%), Positives = 189/332 (56%)
Query: 426 SSNAQKF--ELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTD 483
SSN + ++S+ G + + DQHG RF+Q E SA + + +F EV+PH +LM D
Sbjct: 186 SSNPNESLPKVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMD 245
Query: 484 VFGNYVIQKFFEHGSPDQRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQ 540
FGNY++QK + + +QR ++ + GQ++ +SL YG RV+Q+ +E I+ ++
Sbjct: 246 PFGNYLMQKLLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQIS 305
Query: 541 LVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 599
LV L + +RD NGNHVIQ+C++C+ E EFI ++TH +GC V+Q
Sbjct: 306 LVKSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQ 365
Query: 600 RVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 659
+ + + S Q+ + +V EI ++ LAQD YGNY Q VLE +L++L G V
Sbjct: 366 KCIAYSSGLQREK-LVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYV 424
Query: 660 QMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEK 719
++S K++S++VE+CL + + R ++ E++ S + ++L+ +D YAN+V+Q L
Sbjct: 425 ELSMQKFSSHMVERCLTHCPES-RPQIVRELI--SVPHFDILI--QDPYANFVIQAALAV 479
Query: 720 CNEKLRETLISRIRVHCDALKKYTYGKHIVAR 751
L TL+ IR H L+ Y K I +R
Sbjct: 480 TKGSLHATLVEVIRPH-SILRNNPYCKRIFSR 510
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 487 (176.5 bits), Expect = 2.7e-46, P = 2.7e-46
Identities = 111/374 (29%), Positives = 195/374 (52%)
Query: 384 MRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELK--SSNAQKFE-LSDIAGR 440
MR LN I G G + G+ ++ L S QK+ +++ G+
Sbjct: 223 MRSQMDLNTAKVIKYG-AGDESQNGRLWLQNQLNEDLTMSLNNLSLQPQKYNSIAEARGK 281
Query: 441 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 500
I + DQHG RF+Q+ + +F E++ + S+LM D FGNY++QK E + D
Sbjct: 282 IYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNED 341
Query: 501 QRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH-VMRCVRDQ 556
QR ++ + G ++ +S M+G R +QK +E + ++ +++ H ++ +++
Sbjct: 342 QRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNV 401
Query: 557 NGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVD 616
NGNHV+Q+C++ + +F+ A L+T +GC V+Q+ L + EQ+ Q +V
Sbjct: 402 NGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQK-QHLVS 460
Query: 617 EILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLE 676
EI +A L+QD +GNYV Q+V E + +IL +L G ++S K +SNVVEKCL+
Sbjct: 461 EIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLK 520
Query: 677 YGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHC 736
D R +I E++ + +M D Y NYV+Q L++ + L+ I+++
Sbjct: 521 LADDKHRARIIRELINYGRLDQ----VMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNI 576
Query: 737 DALKKYTYGKHIVA 750
+L+ YGK +++
Sbjct: 577 SSLRTNPYGKKVLS 590
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 491 (177.9 bits), Expect = 4.1e-46, Sum P(2) = 4.1e-46
Identities = 108/333 (32%), Positives = 186/333 (55%)
Query: 424 LKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS-VFKEVLPHASKLMT 482
L + + + L +I G+I + Q G RF+Q+KLE E V+ +F EV H ++LM
Sbjct: 458 LNNQDPKCTSLEEITGQIYHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMI 517
Query: 483 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 542
D +G Y+I + ++ +QR+++ +K+ V + +YG IQK L+ + Q ++
Sbjct: 518 DPYGQYLIPQLMKYCDNNQRRQIVDKIAPSVETFACHVYGIHGIQKLLQYLSPDQVESII 577
Query: 543 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 602
+ G V++ +D GN++IQ ++ E +F+ A G + + TH GC V+ R +
Sbjct: 578 ASIKGKVIQLSKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCI 637
Query: 603 EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMS 662
++ + EQ + +VD+I E + L QDQ+GNYV QH+L + K+Y I+S L I ++S
Sbjct: 638 DNANPEQLEK-LVDKITEHSLKLVQDQFGNYVVQHLLSKNKAYSSKLIVS-LKDNIAELS 695
Query: 663 QHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNE 722
K++SNV+EKCL+ DT EL+I+ + E D +L +++D+YAN+V+Q L+ N+
Sbjct: 696 IQKFSSNVIEKCLQLADTPTYELIIKALT----EAD-ILSLLQDKYANFVIQTALDVSND 750
Query: 723 KLRETLISRIRVHCDALKKYTYGKHIVARFEQL 755
L+ I + +K Y HI + Q+
Sbjct: 751 TQHAKLVKIIVPYIHQIKT-PYVIHIQKKILQV 782
Score = 202 (76.2 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 126/589 (21%), Positives = 237/589 (40%)
Query: 144 GKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNS 203
G SS S+NS G + +S + S N P+ Q P + N G L S
Sbjct: 225 GHPSSSSTPSSLNSSGGSISTSSSTSSPATSTNTT-PNTQAPFKS--PRKLNTSGSGLTS 281
Query: 204 ALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLML 263
+ PP G+ ++ + S S+ TT +S+ +T F G M
Sbjct: 282 -IIPP---GFSNESSPNTSSNIVSPSTTT--TTPLSSTSPSTTTTTTTPTSFQPSGGKMK 335
Query: 264 QSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNG----ALADPS-SKKEPIVAAYMGD 318
+SP + P+ G++ + + LAS+ N + ++ S S +P +
Sbjct: 336 KSPSM-PVIAGKLN---GESLKSPNKPNLASNNNNNNNNYSNSNISFSNIKPNNGSLSSS 391
Query: 319 QNLQSS----LNGGPSISNPRKXXXXXXXXXXXXXXXXXXXQFPT--SPIASPVLPSSPV 372
N S+ L+GG +N PT S P P +
Sbjct: 392 ANSISTGLPNLSGGKINTNVYSSLGNIGSGMNGSSTKDDSVS-PTKKSTDHQPRKPMTKS 450
Query: 373 GSTSQLGLRHEMRLPQGLNRNTG-IYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQK 431
S S +GL ++ L TG IY + Q G R + KK LEE S
Sbjct: 451 VSMSSIGLNNQDPKCTSLEEITGQIYHLTKYQA---GCRFLQ--KK---LEEKPDSEHVT 502
Query: 432 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQ 491
+++ + E +D +G I Q +++C ++ + ++ P V+G + IQ
Sbjct: 503 LIFNEVFDHLNELMIDPYGQYLIPQLMKYCDNNQRRQIVDKIAPSVETFACHVYGIHGIQ 562
Query: 492 KFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVM 550
K ++ SPDQ + + + G+V+ LS G +IQ L+ + +Q V + + G++
Sbjct: 563 KLLQYLSPDQVESIIASIKGKVIQLSKDNKGNYLIQSFLKQFS-PEVNQFVCDAIMGNIE 621
Query: 551 RCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQ 610
+ G V+ +CI+ E++E ++ L +G V+Q +L ++
Sbjct: 622 EICTHKVGCTVVNRCIDNANPEQLEKLVDKITEHSLKLVQDQFGNYVVQHLLS--KNKAY 679
Query: 611 GQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLA-GKIVQMSQHKYASN 669
++ + ++ L+ ++ + V + L+ + I+ L I+ + Q KYA+
Sbjct: 680 SSKLIVSLKDNIAELSIQKFSSNVIEKCLQLADTPTYELIIKALTEADILSLLQDKYANF 739
Query: 670 VVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILE 718
V++ L+ + + L++ I+ + +K Y ++ +KIL+
Sbjct: 740 VIQTALDVSNDTQHAKLVKIIVPYIHQ-------IKTPYVIHIQKKILQ 781
Score = 51 (23.0 bits), Expect = 4.1e-46, Sum P(2) = 4.1e-46
Identities = 29/114 (25%), Positives = 41/114 (35%)
Query: 266 PFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSL 325
P Q Q P G ++S L SSG G+++ SS P + N Q+
Sbjct: 210 PLSSQQQTQQQQQPIGHPSSSSTPSSLNSSG--GSISTSSSTSSPATSTNT-TPNTQA-- 264
Query: 326 NGGPSISNPRKXXXXXXXXXXXXXXXXXXXQFP--TSPIASP-VLPSSPVGSTS 376
P +PRK P +S I SP ++P+ STS
Sbjct: 265 ---P-FKSPRKLNTSGSGLTSIIPPGFSNESSPNTSSNIVSPSTTTTTPLSSTS 314
Score = 38 (18.4 bits), Expect = 9.5e-45, Sum P(2) = 9.5e-45
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 216 QGPVPMPFDATSGSSFNIRTTSVST 240
Q P+ P +++ SS N S+ST
Sbjct: 221 QQPIGHPSSSSTPSSLNSSGGSIST 245
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 474 (171.9 bits), Expect = 6.2e-44, P = 6.2e-44
Identities = 110/322 (34%), Positives = 183/322 (56%)
Query: 434 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 493
+ DI G + + DQHG RF+Q+ + ++ + + +F EV+ H +LM D FGNY++QK
Sbjct: 331 MCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKL 390
Query: 494 FEHGSPDQRKEL---AEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV-LELDGHV 549
+ + +QR ++ A + GQ++ +SL YG RV+Q+ +E I ++ LV L L
Sbjct: 391 LDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGF 450
Query: 550 MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQ 609
+ ++D NGNHVIQ+C++C+ E +FI A ++TH +GC V+Q+ + + S Q
Sbjct: 451 LDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAY-SMRQ 509
Query: 610 QGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASN 669
Q + ++ EI ++ LAQD +GNY Q V+E +L++L G VQ+S K++S+
Sbjct: 510 QREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSH 569
Query: 670 VVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLI 729
+VE+CL + + R ++ E++ D LL +D YAN+V+Q L L +L+
Sbjct: 570 MVERCLMHCPES-RPQIVRELVSVPHF-DQLL---QDPYANFVIQAALAATKGPLHASLV 624
Query: 730 SRIRVHCDALKKYTYGKHIVAR 751
IR H L+ Y K I +R
Sbjct: 625 EVIRPH-SILRNNPYCKRIFSR 645
Score = 131 (51.2 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 42/180 (23%), Positives = 79/180 (43%)
Query: 426 SSNAQKFELSDIAGRI-VEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDV 484
S+ KF + D A + E + +HG +Q+ + + +++ + E+ ++ L D
Sbjct: 471 STEDNKF-IFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDP 529
Query: 485 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 544
FGNY +Q E P + +L G + LS+Q + ++++ L + Q+V E
Sbjct: 530 FGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCP-ESRPQIVRE 588
Query: 545 LDG--HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 602
L H + ++D N VIQ + ++ R + L +PY R+ R L
Sbjct: 589 LVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEVIRPH-SILRNNPYCKRIFSRNL 647
Score = 126 (49.4 bits), Expect = 0.00025, P = 0.00025
Identities = 44/218 (20%), Positives = 101/218 (46%)
Query: 536 HQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGC 595
H + ++ G+V +DQ+G +Q+ + + I + V L P+G
Sbjct: 325 HPSLPNMCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGN 384
Query: 596 RVIQRVLEHCSDEQQGQCIVDEILESA--FALAQDQYGNYVTQHVLERGKSYERTQILSK 653
++Q++L+ C++EQ+ Q ++ E ++ + YG V Q ++E +S ++ ++ K
Sbjct: 385 YLMQKLLDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLV-K 443
Query: 654 LAGK--IVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANY 711
LA + + + + ++V+++CL+ T + + + + E + ++
Sbjct: 444 LALRPGFLDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTE------IATHRHGCC 497
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIV 749
V+QK + + RE LI+ I + L + +G + V
Sbjct: 498 VLQKCIAYSMRQQREKLIAEISRNSLLLAQDPFGNYAV 535
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 426 (155.0 bits), Expect = 2.1e-39, P = 2.1e-39
Identities = 108/348 (31%), Positives = 186/348 (53%)
Query: 408 GQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV 467
G R + S K + K + + D G + + DQ G R +Q+ ++ + + +
Sbjct: 216 GSRELDGSAK---CMKNKEDSLDLASMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVM 272
Query: 468 SVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLV---GQVLPLSLQMYGCR 524
+FKEV+ + +L TD FGNY+IQK E + +QR ++ +L G ++ +S+ YG R
Sbjct: 273 IIFKEVINNVIELGTDPFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTR 332
Query: 525 VIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRG 583
V+QK +E + ++ LV L + R+ NGNHVI C++ +FI+ A
Sbjct: 333 VVQKLIETVTTKEQISLVKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATK 392
Query: 584 QVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGK 643
++T +GC V+QR + + EQ + +VDEI ++ LAQD +GNY+ Q+++E K
Sbjct: 393 FCIEIATTRHGCCVLQRCVSYSVGEQHEK-LVDEISRNSLLLAQDPFGNYLVQYIIE--K 449
Query: 644 SYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVM 703
+L +L G V+++ K+ S+VVEKCL Y + R ++ E++ N +
Sbjct: 450 KVGGVNVLFELRGNYVKLATQKFGSHVVEKCLRYYPES-RSQIVNELVSVL----NFGYL 504
Query: 704 MKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVAR 751
++D YANYV+Q L K +R +L+ ++R + + LK Y K I ++
Sbjct: 505 LQDPYANYVIQCALSKTKGFVRASLVEKVRRY-ENLKMTPYCKRIFSK 551
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 453 (164.5 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 113/344 (32%), Positives = 190/344 (55%)
Query: 415 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 474
++K +EE SS L G I DQHG RF+Q++L+ ++ ++F+E
Sbjct: 544 AEKQRKIEE--SSRFADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETK 601
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
+ +LMTD FGNY+IQK E + +QR L + + +SL +G R +QK +E I+
Sbjct: 602 DYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIK 661
Query: 535 LHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 593
+++Q+V++ L + ++ +D NGNHVIQKC++ + E +FI A ++TH +
Sbjct: 662 TDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRH 721
Query: 594 GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVL--ERGKS-YERT-Q 649
GC V+QR L+H + EQ + D++L L D +GNYV Q+++ E K+ Y+ T +
Sbjct: 722 GCCVLQRCLDHGTTEQCDN-LCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHK 780
Query: 650 ILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYA 709
I+ L + +++S HK+ SNV+EK L+ +E +L EIL E + ++ D Y
Sbjct: 781 IVHLLKPRAIELSIHKFGSNVIEKILKTAIVSEPMIL--EILNNGGET-GIQSLLNDSYG 837
Query: 710 NYVVQKILE---KCNEKLRETLISRIR-VHCDALKKYTYGKHIV 749
NYV+Q L+ K N+ L + L + + ++ +GK I+
Sbjct: 838 NYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIRNTPHGKRII 881
Score = 137 (53.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 38/176 (21%), Positives = 84/176 (47%)
Query: 577 IISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQ 636
++ + G + +L +GCR +Q+ L+ + I +E + L D +GNY+ Q
Sbjct: 560 VLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKA-ADAIFEETKDYTVELMTDSFGNYLIQ 618
Query: 637 HVLERGKSYERTQILSKLAGK-IVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE 695
+LE + +R +L+K++ V++S + + + ++K +E T E ++ + L
Sbjct: 619 KLLEEVTTEQRI-VLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSL---- 673
Query: 696 ENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVAR 751
+ + KD N+V+QK L++ + + + I C + + +G ++ R
Sbjct: 674 -RPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQR 728
Score = 38 (18.4 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 211 AGYPSQGPVPMPFDATSGSSFNI 233
A YP GP+ P G NI
Sbjct: 306 AAYPYGGPLLQPNPIMPGHPHNI 328
Score = 38 (18.4 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 19 PCVMDPQDIALISNNGPAAVSFSSSPCPDGTETSRNPR 56
P P +A + N +V+FS G T+ N +
Sbjct: 370 PLTQSPIHLAPVLNPSSNSVAFSDMKNDGGKPTTDNDK 407
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 430 (156.4 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 96/328 (29%), Positives = 175/328 (53%)
Query: 425 KSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDV 484
KS + Q L G + DQ+G R++Q+ L+ F E+ +LM D
Sbjct: 451 KSQDNQIPHLVGFLGHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDP 510
Query: 485 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 544
FGNY+ QK F + S +Q+ + + ++ + +YG R +Q ++ + +++ L+L+
Sbjct: 511 FGNYMCQKLFVYASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLK 570
Query: 545 LDGHVMRCVR-DQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLE 603
+ + + D NG HV+QKCI P EK+E + + + TL+T+ +GC ++QR L+
Sbjct: 571 IIIPSLTTLACDNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLD 630
Query: 604 HCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQ 663
+ + Q + +V+ I++S L Q+ YGNY+ QHVLE +I+ K G I ++S
Sbjct: 631 RTNGDIQER-LVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSL 689
Query: 664 HKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEK 723
K++SN +E+C+ + RE +++E L N+ ++ D YANYV+Q+ L +E
Sbjct: 690 QKFSSNAIEQCIRTASPSTREQMLQEFLSFP----NIEQLLDDCYANYVMQRFLNVADES 745
Query: 724 LRETLISRIRVHCDALKKYTYGKHIVAR 751
+ ++ I ++ +G+HI+A+
Sbjct: 746 QKFLILRSISHVIPKIQNTRHGRHILAK 773
Score = 159 (61.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 47/210 (22%), Positives = 98/210 (46%)
Query: 547 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 606
GH+ +DQ G +QK ++ P R V L P+G + Q++ + S
Sbjct: 465 GHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYAS 524
Query: 607 DEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLA-GKIVQMSQHK 665
EQ+ +++ I E + + YG Q+++++ S E+ +L K+ + ++
Sbjct: 525 REQK-LSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDN 583
Query: 666 YASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLR 725
++V++KC+ + E L L E NL+ + +++ ++Q+ L++ N ++
Sbjct: 584 NGTHVLQKCIAKFPPEKLEPLF---LSMEE---NLITLATNRHGCCILQRCLDRTNGDIQ 637
Query: 726 ETLISRIRVHCDALKKYTYGKHIVARFEQL 755
E L++ I C L + YG ++V +L
Sbjct: 638 ERLVNSIIKSCLLLVQNAYGNYLVQHVLEL 667
Score = 143 (55.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 65/339 (19%), Positives = 142/339 (41%)
Query: 418 HSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHA 477
+SF +SN K LS A E S D S ++ K + S + ++ L H
Sbjct: 412 NSFFGSHSTSNYSKVPLS--AKLTGEKSDDL--SNLLKNKGKKKSQDNQIPHLVGFLGHL 467
Query: 478 SKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQ-VLPLSLQMYGCRVIQKALEVIELH 536
S + D +G +QK + +P L + Q V+ L + +G + QK
Sbjct: 468 STICKDQYGCRYLQKLLDE-NPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYASRE 526
Query: 537 QKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPA-EKIEFIISAFRGQVATLSTHPYGC 595
QK ++ + ++ + G +Q I+ + + E+I ++ + TL+ G
Sbjct: 527 QKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNNGT 586
Query: 596 RVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLA 655
V+Q+ + E+ + + E+ LA +++G + Q L+R + ++++ +
Sbjct: 587 HVLQKCIAKFPPEKLEPLFLS-MEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSII 645
Query: 656 GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQK 715
+ + Q+ Y + +V+ LE E +IE+ G N+ + ++++ +++
Sbjct: 646 KSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFG------NICKLSLQKFSSNAIEQ 699
Query: 716 ILEKCNEKLRETLISRIRV--HCDALKKYTYGKHIVARF 752
+ + RE ++ + + L Y +++ RF
Sbjct: 700 CIRTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRF 738
>UNIPROTKB|H0YDC5 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525997 Uniprot:H0YDC5
Length = 217
Score = 396 (144.5 bits), Expect = 4.2e-36, P = 4.2e-36
Identities = 86/222 (38%), Positives = 131/222 (59%)
Query: 483 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 542
D G+ IQ E +P +R+ + +++ L + ++G VIQK E L QK L
Sbjct: 6 DQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALA 65
Query: 543 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 602
+ GHV+ G VIQK +E +P+++ QV LSTHPYGCRVIQR+L
Sbjct: 66 ERIRGHVLSLALQMYGCRVIQKALEFIPSDQ----------QVFALSTHPYGCRVIQRIL 115
Query: 603 EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMS 662
EHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++ G ++ +S
Sbjct: 116 EHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 174
Query: 663 QHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMM 704
QHK+ASNVVEKC+ + ER +LI+E+ ++ + L M
Sbjct: 175 QHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTM 216
Score = 375 (137.1 bits), Expect = 8.2e-34, P = 8.2e-34
Identities = 93/213 (43%), Positives = 122/213 (57%)
Query: 443 EFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR 502
EFS DQHGSRFIQ KLE + E+ VF E+L A +LM DVFGNYVIQKFFE GS +Q+
Sbjct: 2 EFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQK 61
Query: 503 KELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVI 562
LAE++ G VL L+LQMYGCRVIQKALE I Q+ V L H C VI
Sbjct: 62 LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ---VFALSTHPYGC-------RVI 111
Query: 563 QKCIE-CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILES 621
Q+ +E C+P + + I+ L YG VIQ VLEH E + + IV EI +
Sbjct: 112 QRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGN 169
Query: 622 AFALAQDQYGNYVTQHVLERGKSYERTQILSKL 654
L+Q ++ + V + + ER ++ ++
Sbjct: 170 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 202
Score = 217 (81.4 bits), Expect = 9.3e-17, P = 9.3e-17
Identities = 65/210 (30%), Positives = 100/210 (47%)
Query: 413 EDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 468
+D F++ LK A E ++I + VD G+ IQ+ E S E+K++
Sbjct: 5 QDQHGSRFIQ-LKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 63
Query: 469 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 528
+ + + H L ++G VIQK E DQ QV LS YGCRVIQ+
Sbjct: 64 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ----------QVFALSTHPYGCRVIQR 113
Query: 529 ALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 588
LE Q ++ EL H + V+DQ GN+VIQ +E E I++ RG V L
Sbjct: 114 ILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVL 173
Query: 589 STHPYGCRVIQRVLEHCSDEQQGQCIVDEI 618
S H + V+++ + H S ++ ++DE+
Sbjct: 174 SQHKFASNVVEKCVTHASRTERA-VLIDEV 202
Score = 121 (47.7 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 32/113 (28%), Positives = 57/113 (50%)
Query: 620 ESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGD 679
+ FAL+ YG V Q +LE + IL +L Q+ Q +Y + V++ LE+G
Sbjct: 96 QQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR 155
Query: 680 TAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRI 732
++ ++ EI G N+LV+ + ++A+ VV+K + + R LI +
Sbjct: 156 PEDKSKIVAEIRG------NVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 202
>POMBASE|SPCC1682.08c [details] [associations]
symbol:SPCC1682.08c "RNA-binding protein Mcp2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPCC1682.08c GO:GO:0007126 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 eggNOG:COG5099
EMBL:AB189990 PIR:T41065 RefSeq:NP_587801.1
ProteinModelPortal:O74438 EnsemblFungi:SPCC1682.08c.1
GeneID:2539137 KEGG:spo:SPCC1682.08c OMA:FNDSANG OrthoDB:EOG4QNR4B
NextBio:20800309 Uniprot:O74438
Length = 703
Score = 392 (143.0 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 100/380 (26%), Positives = 193/380 (50%)
Query: 388 QGLNRNTGIYSGWQGQRTFEGQRTFEDSKKH---SFLEELKSSNAQKFELSDIAGRIVEF 444
+G+N + S W+ E + + ++ NA ++ + I +I+
Sbjct: 312 KGVNSAASLQSIWETMNNSNPSVIPESTSSREPAARYRKISERNAV-YDWNVIIDKII-V 369
Query: 445 SVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKE 504
S DQ S F+QQKL+ S + K ++ ++ LM + FGN+++Q+ FEHG+ Q ++
Sbjct: 370 SNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQIRQ 429
Query: 505 LAEKLVGQVLPLSLQMYGCRVIQKAL----EVIELHQKSQLVLELDGHVMRCVRDQNGNH 560
+ ++G +L L+ +GC V+QKA+ E I+L +L L +D +M H
Sbjct: 430 MGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMH----HYACH 485
Query: 561 VIQKCIEC----VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVD 616
V QK E P + + +A RG+ ++ G V+Q + E+C ++ + +CI +
Sbjct: 486 VWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECI-E 544
Query: 617 EILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLE 676
EI+ +A+ Q+GN+V QH++E G+ + +++ L + V+ S ++AS V+EK ++
Sbjct: 545 EIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIK 604
Query: 677 YGDTAERELLIEEILGQSEENDN--LLVMMKDQYANYVVQKILEKCNEKLRETLISRIRV 734
G L +++I + L+ + DQY NY++Q+I++ + +I+ I+
Sbjct: 605 SGPKNFISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEKNLVITHIKK 664
Query: 735 HCDALKKYTYGKHIVARFEQ 754
H +L+ YG+ + E+
Sbjct: 665 HMVSLRGSKYGQKVAYLVEK 684
Score = 174 (66.3 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 47/189 (24%), Positives = 96/189 (50%)
Query: 437 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 496
+ G+ E +V ++GS +Q E+C ++K +E++ H + +GN+V+Q E+
Sbjct: 510 LRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVEN 569
Query: 497 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE-----VIELHQKSQLVLELDGH--- 548
G + K + + L+ + + S+ + +VI+KA++ I L+ K +D
Sbjct: 570 GQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITNARVDRTRQP 629
Query: 549 VMRCVRDQNGNHVIQKCIEC-VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSD 607
++ DQ GN++IQ+ I+ PAEK +I+ + + +L YG +V V E +
Sbjct: 630 LIDIASDQYGNYLIQQIIQLGQPAEK-NLVITHIKKHMVSLRGSKYGQKVAYLV-EKWNS 687
Query: 608 EQQGQCIVD 616
++Q +++
Sbjct: 688 QKQVSSVIN 696
Score = 45 (20.9 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 309 EPIVAAYMGDQNLQSSLNGGP 329
E I++A ++NL S+ NG P
Sbjct: 182 ENILSASSSEENLNSNRNGDP 202
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 387 (141.3 bits), Expect = 1.6e-33, P = 1.6e-33
Identities = 96/334 (28%), Positives = 176/334 (52%)
Query: 427 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 486
SN + +I G + + DQ G R +Q+ +E + E + ++ H +L D FG
Sbjct: 240 SNNDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFG 299
Query: 487 NYVIQKFFEHGSPDQRKELAEKLVG---QVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 543
NY++QK F+ +QR + L +++ + L YG RV+QK +E ++ Q+ LV
Sbjct: 300 NYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVK 359
Query: 544 E-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 602
L + V+D NGNHVIQ C++ + EF++ A A ++ H +GC V+Q +
Sbjct: 360 SGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCI 419
Query: 603 EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMS 662
+ S Q + +V EI ++ L+QD +GNYV Q+++++ S ++L + +++
Sbjct: 420 SN-SVGLQRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQVS--AVKLLVQFRMHYAELA 476
Query: 663 QHKYASNVVEKCL-EYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCN 721
K++S+V+EKCL +Y ++ R ++ E+L N +++D YANYV+Q L
Sbjct: 477 TQKFSSHVIEKCLRKYPES--RAEIVRELLCVP----NFEYLLQDPYANYVIQTALSVTK 530
Query: 722 EKLRETLISRI----RVHCDALKKYTYGKHIVAR 751
+R L++++ ++H K + K I+ +
Sbjct: 531 GPVRAKLVAKVYRYGKLHSSPYCKKIFSKTILKK 564
Score = 242 (90.2 bits), Expect = 4.5e-17, P = 4.5e-17
Identities = 64/266 (24%), Positives = 126/266 (47%)
Query: 498 SPDQRKELAE--KLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 555
SP +L ++ G V ++ GCRV+QK +E H+ ++L + HV+ D
Sbjct: 237 SPKSNNDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMD 296
Query: 556 QNGNHVIQKCIECVPAEKIEFIISAFRG---QVATLSTHPYGCRVIQRVLEHCSDEQQGQ 612
GN+++QK + E+ I+S ++ + + YG RV+Q+++E +QQ
Sbjct: 297 PFGNYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIA 356
Query: 613 CIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVE 672
+ + AL +D GN+V Q L+ + +L +++ H++ V++
Sbjct: 357 LVKSGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQ 416
Query: 673 KCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRI 732
C+ +RE L+ EI + N L + +D + NYVVQ ++++ ++ L+ +
Sbjct: 417 CCISNSVGLQRERLVAEI------SRNSLHLSQDPFGNYVVQYLIDQQVSAVK--LLVQF 468
Query: 733 RVHCDALKKYTYGKHIVARFEQLYGE 758
R+H L + H++ + + Y E
Sbjct: 469 RMHYAELATQKFSSHVIEKCLRKYPE 494
>POMBASE|SPAC4G9.05 [details] [associations]
symbol:mpf1 "meiotic PUF family protein 1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPAC4G9.05 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003729 eggNOG:COG5099
OrthoDB:EOG4QNR4B EMBL:AB248102 PIR:T38864 RefSeq:NP_593687.1
ProteinModelPortal:Q10238 EnsemblFungi:SPAC4G9.05.1 GeneID:2543134
KEGG:spo:SPAC4G9.05 NextBio:20804161 Uniprot:Q10238
Length = 581
Score = 378 (138.1 bits), Expect = 2.6e-32, P = 2.6e-32
Identities = 97/350 (27%), Positives = 179/350 (51%)
Query: 412 FEDSKKHSFLEELK-SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVF 470
FE + HS E L+ S+ K++ + +I+ F DQ S +QQ+L++ E+ +++
Sbjct: 233 FEKNSVHSGKETLQYSATISKWKA--MIEQII-FQNDQAASLSLQQQLKNEDIEDNINLI 289
Query: 471 KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL 530
+LP + LM + FGN++IQK FE+ + Q + + L V LS+ +G V+QK+L
Sbjct: 290 NTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSL 349
Query: 531 EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF----RGQVA 586
E+ + L+ EL + + ++ HV QK E ++ I F +G+
Sbjct: 350 EIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFETRRKSLVDGIFDHFNKKMQGKWL 409
Query: 587 TLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE 646
+S G V+Q + E+C ++ + C+ DEI+ + + Q+GN+V QH++E G +
Sbjct: 410 QVSVSEMGSLVVQTIFENCKEKDKRTCL-DEIINNMDQIICGQWGNWVIQHIIEHGSEPD 468
Query: 647 RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLV--MM 704
+ +IL+ L ++ S ++YAS VVE+ L + ++EI E + + +
Sbjct: 469 KQRILNSLLKEVESYSTNRYASKVVERALRVCHVTFFDRYVKEITTPQNELPTIFLQEIA 528
Query: 705 KDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQ 754
+QY NY+VQ +L+ + ++ H +L+ + YG+ I A E+
Sbjct: 529 SNQYGNYIVQYLLQVATPSQINLMAEHLKKHMVSLRGHKYGQRIAALVEK 578
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 368 (134.6 bits), Expect = 1.4e-31, P = 1.4e-31
Identities = 102/365 (27%), Positives = 182/365 (49%)
Query: 400 WQGQRTFEGQRTFE-----DSKKHSFLEELKSSNAQKFELS---DIAGRIVEFSVDQHGS 451
++G FEG R + + S+ +E K + +L +I G + + DQ G
Sbjct: 169 FKGSLMFEGIRVSQILAAMEGSGASYPDEPKINGGLPLDLVSMVEIYGSVNLMARDQIGC 228
Query: 452 RFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVG 511
R +Q+ +E + + +F E++ H +L D GNY++QK +QR + L
Sbjct: 229 RALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMIVSVLTS 288
Query: 512 ---QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE 567
+++ + L G RVIQK ++ ++ Q+ LV L+ + V D NG HV+Q C+E
Sbjct: 289 KPRELIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLE 348
Query: 568 CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQ 627
+ +F++ A A L+TH YGC V+Q L + Q + +V EI + L+Q
Sbjct: 349 FLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGLQHER-LVAEISRDSLRLSQ 407
Query: 628 DQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCL-EYGDTAERELL 686
D +GNYV Q ++++ S +L ++++ K++S+V+EKCL +Y ++ R +
Sbjct: 408 DPFGNYVVQCLIDQQVS--SVNLLLPFRTHCIELATQKFSSHVIEKCLRKYPES--RAEI 463
Query: 687 IEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGK 746
+ E+L N +++D YANYV+Q L +R L+ +++ L+ Y K
Sbjct: 464 VRELLSYP----NFEQLLQDPYANYVIQTALSVTKGAVRARLVEKVK-RFGKLQSNPYCK 518
Query: 747 HIVAR 751
I ++
Sbjct: 519 KIFSK 523
Score = 201 (75.8 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 63/255 (24%), Positives = 115/255 (45%)
Query: 508 KLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE 567
++ G V ++ GCR +QK +E + + LE+ HV+ D GN+++QK +
Sbjct: 213 EIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLV 272
Query: 568 CVPAEKIEFIISAFRG---QVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAF- 623
E+ I+S ++ + + G RVIQ++++ +QQ +V LE F
Sbjct: 273 VSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQ-IALVKSALEPGFL 331
Query: 624 ALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAER 683
L D G +V Q LE + ++ Q++ H+Y V++ L +
Sbjct: 332 VLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGLQH 391
Query: 684 ELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYT 743
E L+ EI D+L + +D + NYVVQ ++++ + L+ R HC L
Sbjct: 392 ERLVAEI-----SRDSLR-LSQDPFGNYVVQCLIDQQVSSVN--LLLPFRTHCIELATQK 443
Query: 744 YGKHIVARFEQLYGE 758
+ H++ + + Y E
Sbjct: 444 FSSHVIEKCLRKYPE 458
>WB|WBGene00004239 [details] [associations]
symbol:puf-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0035046 "pronuclear
migration" evidence=IMP] [GO:0009992 "cellular water homeostasis"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 341 (125.1 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 91/268 (33%), Positives = 144/268 (53%)
Query: 434 LSDIAGR--IVEFSVDQHGSRFIQQKLEHCSAEEKVSV----FKEVLPHAS---KLMTDV 484
L D+ +VEF+ D++G RF+Q EH E V F++++ + L +++
Sbjct: 137 LQDVLANDALVEFATDKNGCRFLQ---EHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNM 193
Query: 485 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 544
FGN+ +Q+ E + ++++ L E L + L L CRVIQ A++ +++H ++L LE
Sbjct: 194 FGNFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLE 253
Query: 545 L-DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ--VATLSTHPYGCRVIQRV 601
L D H++R DQNGNHVIQK ++ +P F++ F + + YGCRVIQ
Sbjct: 254 LRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQST 313
Query: 602 LEHCSDEQQGQCIVDEI--LESAFA--------LAQDQYGNYVTQHVLERGKSYE--RTQ 649
+E S +Q QC + L S A LA +++ NYV QHV++ G + R
Sbjct: 314 VETLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDI 373
Query: 650 ILSK-LAGKIVQMSQHKYASNVVEKCLE 676
I+ + L ++ MSQ KYAS+VVE E
Sbjct: 374 IIEQCLLQNLLSMSQEKYASHVVEVAFE 401
Score = 162 (62.1 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 77/280 (27%), Positives = 124/280 (44%)
Query: 450 GSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKL 509
G+ F+Q+ LE + EE+ + + + L D VIQ + L+ +L
Sbjct: 195 GNFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLEL 254
Query: 510 VG-QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIEC 568
++ LS+ G VIQK ++ + + + LV D D N HV Q C
Sbjct: 255 RDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLV---DFFA----DDDNLIHVCQDKYGC 307
Query: 569 VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQD 628
+ V TLST Y RV+ S ++ + + LA +
Sbjct: 308 ----------RVIQSTVETLSTDQYAQCYQHRVILLRS-------LMAGVTRNCTQLASN 350
Query: 629 QYGNYVTQHVLERGKSYE--RTQILSK-LAGKIVQMSQHKYASNVVE---KCLEYGDTAE 682
++ NYV QHV++ G + R I+ + L ++ MSQ KYAS+VVE +C Y AE
Sbjct: 351 EFANYVVQHVIKCGDALAVYRDIIIEQCLLQNLLSMSQEKYASHVVEVAFECAPYRLVAE 410
Query: 683 R-ELLIEEILGQSEEN-DNLLVMMKDQYANYVVQKILEKC 720
+ E + + N D L +++ QY NYVVQ++++ C
Sbjct: 411 MMNEIFEGYIPHPDTNRDALDILLFHQYGNYVVQQMIQTC 450
Score = 138 (53.6 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 68/271 (25%), Positives = 123/271 (45%)
Query: 482 TDVFGNYVIQKFFE-HGSPDQRKELAEKLV-GQVLPLSL--QMYGCRVIQKALEVIELHQ 537
TD G +Q+ + D ++L KLV + + LSL M+G +Q+ LE +
Sbjct: 151 TDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRVLECSNTEE 210
Query: 538 KSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRG-QVATLSTHPYGCR 596
+ L L + D++ VIQ I+ + + R + LS G
Sbjct: 211 QEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTHLVRLSIDQNGNH 270
Query: 597 VIQRVLEHCSDEQQGQCIVDEILE--SAFALAQDQYGNYVTQHVLER------GKSYERT 648
VIQ++++ +VD + + + QD+YG V Q +E + Y+
Sbjct: 271 VIQKIVKTLP-VSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVETLSTDQYAQCYQHR 329
Query: 649 QIL--SKLAG---KIVQMSQHKYASNVVEKCLEYGDTAE--RELLIEEILGQSEENDNLL 701
IL S +AG Q++ +++A+ VV+ ++ GD R+++IE+ L Q NLL
Sbjct: 330 VILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIIIEQCLLQ-----NLL 384
Query: 702 VMMKDQYANYVVQKILEKCNEKLRETLISRI 732
M +++YA++VV+ E +L +++ I
Sbjct: 385 SMSQEKYASHVVEVAFECAPYRLVAEMMNEI 415
>UNIPROTKB|Q9U2G4 [details] [associations]
symbol:puf-3 "Protein PUF-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 341 (125.1 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 91/268 (33%), Positives = 144/268 (53%)
Query: 434 LSDIAGR--IVEFSVDQHGSRFIQQKLEHCSAEEKVSV----FKEVLPHAS---KLMTDV 484
L D+ +VEF+ D++G RF+Q EH E V F++++ + L +++
Sbjct: 137 LQDVLANDALVEFATDKNGCRFLQ---EHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNM 193
Query: 485 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 544
FGN+ +Q+ E + ++++ L E L + L L CRVIQ A++ +++H ++L LE
Sbjct: 194 FGNFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLE 253
Query: 545 L-DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ--VATLSTHPYGCRVIQRV 601
L D H++R DQNGNHVIQK ++ +P F++ F + + YGCRVIQ
Sbjct: 254 LRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQST 313
Query: 602 LEHCSDEQQGQCIVDEI--LESAFA--------LAQDQYGNYVTQHVLERGKSYE--RTQ 649
+E S +Q QC + L S A LA +++ NYV QHV++ G + R
Sbjct: 314 VETLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDI 373
Query: 650 ILSK-LAGKIVQMSQHKYASNVVEKCLE 676
I+ + L ++ MSQ KYAS+VVE E
Sbjct: 374 IIEQCLLQNLLSMSQEKYASHVVEVAFE 401
Score = 162 (62.1 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 77/280 (27%), Positives = 124/280 (44%)
Query: 450 GSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKL 509
G+ F+Q+ LE + EE+ + + + L D VIQ + L+ +L
Sbjct: 195 GNFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLEL 254
Query: 510 VG-QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIEC 568
++ LS+ G VIQK ++ + + + LV D D N HV Q C
Sbjct: 255 RDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLV---DFFA----DDDNLIHVCQDKYGC 307
Query: 569 VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQD 628
+ V TLST Y RV+ S ++ + + LA +
Sbjct: 308 ----------RVIQSTVETLSTDQYAQCYQHRVILLRS-------LMAGVTRNCTQLASN 350
Query: 629 QYGNYVTQHVLERGKSYE--RTQILSK-LAGKIVQMSQHKYASNVVE---KCLEYGDTAE 682
++ NYV QHV++ G + R I+ + L ++ MSQ KYAS+VVE +C Y AE
Sbjct: 351 EFANYVVQHVIKCGDALAVYRDIIIEQCLLQNLLSMSQEKYASHVVEVAFECAPYRLVAE 410
Query: 683 R-ELLIEEILGQSEEN-DNLLVMMKDQYANYVVQKILEKC 720
+ E + + N D L +++ QY NYVVQ++++ C
Sbjct: 411 MMNEIFEGYIPHPDTNRDALDILLFHQYGNYVVQQMIQTC 450
Score = 138 (53.6 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 68/271 (25%), Positives = 123/271 (45%)
Query: 482 TDVFGNYVIQKFFE-HGSPDQRKELAEKLV-GQVLPLSL--QMYGCRVIQKALEVIELHQ 537
TD G +Q+ + D ++L KLV + + LSL M+G +Q+ LE +
Sbjct: 151 TDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRVLECSNTEE 210
Query: 538 KSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRG-QVATLSTHPYGCR 596
+ L L + D++ VIQ I+ + + R + LS G
Sbjct: 211 QEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTHLVRLSIDQNGNH 270
Query: 597 VIQRVLEHCSDEQQGQCIVDEILE--SAFALAQDQYGNYVTQHVLER------GKSYERT 648
VIQ++++ +VD + + + QD+YG V Q +E + Y+
Sbjct: 271 VIQKIVKTLP-VSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVETLSTDQYAQCYQHR 329
Query: 649 QIL--SKLAG---KIVQMSQHKYASNVVEKCLEYGDTAE--RELLIEEILGQSEENDNLL 701
IL S +AG Q++ +++A+ VV+ ++ GD R+++IE+ L Q NLL
Sbjct: 330 VILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIIIEQCLLQ-----NLL 384
Query: 702 VMMKDQYANYVVQKILEKCNEKLRETLISRI 732
M +++YA++VV+ E +L +++ I
Sbjct: 385 SMSQEKYASHVVEVAFECAPYRLVAEMMNEI 415
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 346 (126.9 bits), Expect = 4.5e-28, P = 4.5e-28
Identities = 84/267 (31%), Positives = 152/267 (56%)
Query: 426 SSNAQKFELSDIAGRIVEF---SVDQHGSRFIQQKLEHCSAEEKVS--VFKEVLPHASKL 480
S+++ E+S + R +++ + DQ G RF+Q+KLE S V +++++ P L
Sbjct: 197 STSSSMVEISALPLRDLDYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDL 256
Query: 481 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 540
+ D FGNY++QK ++ + +Q+ L + + V +S+ YG R +QK ++ ++ +
Sbjct: 257 ILDPFGNYLVQKLCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQID 316
Query: 541 LVL-----ELDG--HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF--RGQVATLSTH 591
L++ E V+ + D NGNHVIQKCI K FII A + + T+STH
Sbjct: 317 LIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTH 376
Query: 592 PYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKS--YERTQ 649
+GC V+Q++L C+ +Q + V +I++ L DQ+GNY+ Q +L+ + Y +
Sbjct: 377 KHGCCVLQKLLSVCTLQQIFKISV-KIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAE 435
Query: 650 ILSKLAGKIVQMSQHKYASNVVEKCLE 676
+ ++L+ ++ Q+S K++SNVVEK ++
Sbjct: 436 LFNRLSNELCQLSCLKFSSNVVEKFIK 462
Score = 140 (54.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 36/137 (26%), Positives = 77/137 (56%)
Query: 588 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFA-LAQDQYGNYVTQHVLERGKSYE 646
L+T +GCR +Q+ LE S+ + ++ E ++ F L D +GNY+ Q + + + +
Sbjct: 218 LATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTAEQ 277
Query: 647 RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEIL-GQSEEN---DNLLV 702
+T ++ + + Q+S ++Y + ++K + DT + E+ I+ I+ G S+E + ++
Sbjct: 278 KTLLIQTIYPNVFQISINQYGTRSLQKII---DTVDNEVQIDLIIKGFSQEFTSIEQVVT 334
Query: 703 MMKDQYANYVVQKILEK 719
++ D N+V+QK + K
Sbjct: 335 LINDLNGNHVIQKCIFK 351
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 332 (121.9 bits), Expect = 1.8e-26, P = 1.8e-26
Identities = 92/313 (29%), Positives = 161/313 (51%)
Query: 422 EELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHC---SAEEKVS----VFKEVL 474
E L S N K L+ + I++ + DQ+G RF+Q+K++ + + +++ +F ++
Sbjct: 269 EYLASIN--KLPLTQLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIY 326
Query: 475 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 534
H +L+ D FGNY+IQK + + L E L + +S+ +G R +QK ++ +
Sbjct: 327 SHVYELIVDPFGNYLIQKLIVYCNESNLDLLMEILQYNLFQISINQHGTRALQKIIDSLN 386
Query: 535 -LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 593
HQ L+ L +++ ++D NGNHVIQK + +FI + + ++TH +
Sbjct: 387 NSHQLGLLIKGLKPYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKH 446
Query: 594 GCRVIQRVLEHCSDEQQGQCIVDEIL--ESAFALAQDQYGNYVTQHVLERGKSYERTQIL 651
GC V+Q+ L H + +Q G+ IL E+ L DQ+GNYV Q+++ QI
Sbjct: 447 GCCVLQKCLNHVTLQQLGE-FSRAILKFENFKLLINDQFGNYVLQYLISINSLDINFQIF 505
Query: 652 SKLAG-KIVQMSQHKYASNVVEKCLE--YGDTAER---ELLIEEILGQSEENDNLLVMMK 705
I + K++SNVVEK L+ Y + + L E++ +D L V++
Sbjct: 506 QNFVNFGISNLCNLKFSSNVVEKFLKNCYANESVNVSFSNLKFELIYIILVSD-LNVLIN 564
Query: 706 DQYANYVVQKILE 718
D Y NYV+Q +++
Sbjct: 565 DPYGNYVIQTMID 577
>WB|WBGene00022257 [details] [associations]
symbol:puf-11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009792 GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000003 GO:GO:0003723 EMBL:FO081731
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
RefSeq:NP_741425.1 ProteinModelPortal:Q8IU00 SMR:Q8IU00
IntAct:Q8IU00 STRING:Q8IU00 PaxDb:Q8IU00 EnsemblMetazoa:Y73B6BL.38
GeneID:177406 KEGG:cel:CELE_Y73B6BL.38 UCSC:Y73B6BL.38 CTD:177406
WormBase:Y73B6BL.38 InParanoid:Q8IU00 OMA:HVVKCGG NextBio:896676
Uniprot:Q8IU00
Length = 505
Score = 322 (118.4 bits), Expect = 3.1e-26, P = 3.1e-26
Identities = 81/252 (32%), Positives = 138/252 (54%)
Query: 441 IVEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVLPHAS---KLMTDVFGNYVIQKFFEH 496
+VEF+ D++G RF+Q+ S + +F++++ + L ++FGN+ +Q+ E
Sbjct: 149 LVEFATDKNGCRFLQEHYPTESDNDIHQKLFRKLVEDRAIFLSLCCNMFGNFFVQRVLEC 208
Query: 497 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL-DGHVMRCVRD 555
+ ++++ L E L + L L CRVIQ A++ +++H ++L LEL D +++R D
Sbjct: 209 SNTEEQEILTEHLASDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTYLVRLSID 268
Query: 556 QNGNHVIQKCIECVPAEKIEFIISAFRGQ--VATLSTHPYGCRVIQRVLEHCSDEQQGQC 613
QNGNHVIQK ++ +P F++ F + + YGCRVIQ +E S + +C
Sbjct: 269 QNGNHVIQKIVKTLPVSAWSFVVEFFADDDNLIHVCQDKYGCRVIQSTVETLSSDTYAEC 328
Query: 614 IVDEI--LESAFA--------LAQDQYGNYVTQHVLERGKSYE--RTQILSK-LAGKIVQ 660
+ L S + LA +++ NYV QHV++ G + R I+ + L ++
Sbjct: 329 YQQRVVLLRSLMSGVTRNCSQLASNEFANYVVQHVIKCGDAMAVYRDVIIEQCLLQNLLS 388
Query: 661 MSQHKYASNVVE 672
MSQ KYAS+VVE
Sbjct: 389 MSQEKYASHVVE 400
Score = 158 (60.7 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 87/317 (27%), Positives = 137/317 (43%)
Query: 420 FLEE---LKSSNA--QKFELSDIAGRIVEFSV--DQHGSRFIQQKLEHCSAEEKVSVFKE 472
FL+E +S N QK + R + S+ + G+ F+Q+ LE + EE+ + +
Sbjct: 161 FLQEHYPTESDNDIHQKLFRKLVEDRAIFLSLCCNMFGNFFVQRVLECSNTEEQEILTEH 220
Query: 473 VLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLP-LSLQMYGCRVIQKALE 531
+ L D VIQ + L+ +L L LS+ G VIQK ++
Sbjct: 221 LASDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTYLVRLSIDQNGNHVIQKIVK 280
Query: 532 VIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTH 591
+ + S V+E D N HV Q C + V TLS+
Sbjct: 281 TLPVSAWS-FVVEFFAD------DDNLIHVCQDKYGC----------RVIQSTVETLSSD 323
Query: 592 PYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE--RTQ 649
Y QRV+ S ++ + + LA +++ NYV QHV++ G + R
Sbjct: 324 TYAECYQQRVVLLRS-------LMSGVTRNCSQLASNEFANYVVQHVIKCGDAMAVYRDV 376
Query: 650 ILSK-LAGKIVQMSQHKYASNVVEK---CLEYGDTAER-ELLIEEILGQSEEN-DNLLVM 703
I+ + L ++ MSQ KYAS+VVE C AE + E + + N D L ++
Sbjct: 377 IIEQCLLQNLLSMSQEKYASHVVEVAFGCAPCRLAAEMMNEIFEGYIPHPDTNRDALDIL 436
Query: 704 MKDQYANYVVQKILEKC 720
+ QY NYVVQK+++ C
Sbjct: 437 LFHQYGNYVVQKMIQIC 453
>WB|WBGene00004243 [details] [associations]
symbol:puf-7 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IGI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0035188 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477 GO:GO:0003723
GO:GO:0000910 GO:GO:0007281 eggNOG:COG5099
GeneTree:ENSGT00390000017241 EMBL:FO080145 HOGENOM:HOG000113900
PIR:T32538 RefSeq:NP_500820.1 PDB:3V71 PDBsum:3V71
ProteinModelPortal:O44169 SMR:O44169 STRING:O44169
EnsemblMetazoa:B0273.2.1 EnsemblMetazoa:B0273.2.2 GeneID:177332
KEGG:cel:CELE_B0273.2 UCSC:B0273.2.1 CTD:177332 WormBase:B0273.2
InParanoid:O44169 OMA:HAMQRIR NextBio:896304 Uniprot:O44169
Length = 485
Score = 261 (96.9 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 72/281 (25%), Positives = 144/281 (51%)
Query: 434 LSDIA--GRIVEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVLPHASKLMTDVF----G 486
L D+ G++++F++D G +F++ S ++ + +VF E ++ L + G
Sbjct: 84 LEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVF-EKFTESTTLFVGLCHSRNG 142
Query: 487 NYVIQKFFEHGSPDQRKELAEKLV-GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 545
N+++QK E +P +++EL +++ G +L + + CRV+Q AL+ + QL+ EL
Sbjct: 143 NFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQEL 202
Query: 546 DGHVMRCV-RDQNGNHVIQKCIECVPAEKIEFIISAFRG--QVATLSTHPYGCRVIQRVL 602
+ + DQ HVIQ+ ++ +P + F + + + YGCR++Q+V+
Sbjct: 203 STFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVI 262
Query: 603 EHCSDEQQGQC----------IVDEILESAFALAQDQYGNYVTQHVLERGKSYE--RTQI 650
+ ++ + C ++ I+ + + L+ +++ NYV Q+V++ E R I
Sbjct: 263 DRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTI 322
Query: 651 LSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 690
+ K L ++ MSQ KYAS+V+E + A ++EEI
Sbjct: 323 IDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEI 363
Score = 143 (55.4 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 38/115 (33%), Positives = 62/115 (53%)
Query: 618 ILESAFALAQDQYGNYVTQHVLERGKSYE--RTQILSK-LAGKIVQMSQHKYASNVVEKC 674
I+ + + L+ +++ NYV Q+V++ E R I+ K L ++ MSQ KYAS+V+E
Sbjct: 288 IVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGA 347
Query: 675 LEYGDTAERELLIEEILG----QSEEN-DNLLVMMKDQYANYVVQKILEKCNEKL 724
+ A ++EEI E N D L +++ QY NYVVQ+++ C L
Sbjct: 348 FLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAAL 402
Score = 42 (19.8 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 16/74 (21%), Positives = 28/74 (37%)
Query: 137 DKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQPSGAGVYPSQYNV 196
D +SY F+S +P P++ S + +G + PSG + Y +
Sbjct: 56 DSDSY---IFNSGSGSSDAETPAPVAPIFISLEDVLLNGQLIDFAIDPSGVKFLEANYPL 112
Query: 197 GGY-ALNSALFPPF 209
+ A+F F
Sbjct: 113 DSEDQIRKAVFEKF 126
>WB|WBGene00004242 [details] [associations]
symbol:puf-6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0035188 GO:GO:0005737 GO:GO:0008285 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0048477
GO:GO:0000910 GO:GO:0003730 GO:GO:0007281 GO:GO:0006402
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:Z81507 PIR:T21080
RefSeq:NP_496773.1 ProteinModelPortal:O01322 SMR:O01322
STRING:O01322 EnsemblMetazoa:F18A11.1.1 EnsemblMetazoa:F18A11.1.2
GeneID:174947 KEGG:cel:CELE_F18A11.1 UCSC:F18A11.1.1 CTD:174947
WormBase:F18A11.1 HOGENOM:HOG000113900 InParanoid:O01322
OMA:RDIANHI NextBio:886152 Uniprot:O01322
Length = 485
Score = 260 (96.6 bits), Expect = 2.9e-19, P = 2.9e-19
Identities = 71/274 (25%), Positives = 141/274 (51%)
Query: 439 GRIVEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVLPHASKLMTDVF----GNYVIQKF 493
G +++F++D G +F++ S ++ + +VF E L ++ L + GN+++QK
Sbjct: 91 GLLIDFAIDPSGVKFLEANYPLDSEDQIRKAVF-EKLTESTTLFVGLCHSRNGNFIVQKL 149
Query: 494 FEHGSPDQRKELAEKLV-GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRC 552
E +P +++EL +++ G +L + + CRV+Q AL+ + QL+ EL +
Sbjct: 150 VELATPAEQRELLRQMIDGGLLVMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAA 209
Query: 553 V-RDQNGNHVIQKCIECVPAEKIEFIISAFRG--QVATLSTHPYGCRVIQRVLEHCSDEQ 609
+ DQ HVIQ+ ++ +P + F + + + YGCR++Q+V++ ++
Sbjct: 210 MCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENP 269
Query: 610 QGQC----------IVDEILESAFALAQDQYGNYVTQHVLERGKSYE--RTQILSK-LAG 656
+ C ++ I+ + + L+ +++ NYV Q+V++ E R I+ K L
Sbjct: 270 KLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLR 329
Query: 657 KIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 690
++ MSQ KYAS+V+E + A ++EEI
Sbjct: 330 NLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEI 363
Score = 140 (54.3 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 38/115 (33%), Positives = 62/115 (53%)
Query: 618 ILESAFALAQDQYGNYVTQHVLERGKSYE--RTQILSK-LAGKIVQMSQHKYASNVVEKC 674
I+ + + L+ +++ NYV Q+V++ E R I+ K L ++ MSQ KYAS+V+E
Sbjct: 288 IVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGA 347
Query: 675 LEYGDTAERELLIEEILG----QSEEN-DNLLVMMKDQYANYVVQKILEKCNEKL 724
+ A ++EEI E N D L +++ QY NYVVQ+++ C L
Sbjct: 348 FLFAPPALLHEMMEEIFSGYVKDVELNRDALDILLFHQYGNYVVQQMISICTAAL 402
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 45/207 (21%), Positives = 94/207 (45%)
Query: 556 QNGNHVIQKCIE-CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCI 614
+NGN ++QK +E PAE+ E + G + + + CRV+Q L+ Q I
Sbjct: 140 RNGNFIVQKLVELATPAEQRELLRQMIDGGLLVMCKDKFACRVVQLALQKFDHSNVFQLI 199
Query: 615 VDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAG--KIVQMSQHKYASNVVE 672
+ A+ DQ +V Q V+++ T + L+ ++ + Q KY +V+
Sbjct: 200 QELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQ 259
Query: 673 KCLE-YGDTAE------RELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCN--EK 723
+ ++ + + R L+ ++ N L +++ANYV+Q +++ E
Sbjct: 260 QVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRL--SSNEFANYVIQYVIKSSGIMEM 317
Query: 724 LRETLISRIRV-HCDALKKYTYGKHIV 749
R+T+I + + + ++ + Y H++
Sbjct: 318 YRDTIIDKCLLRNLLSMSQDKYASHVI 344
>CGD|CAL0004399 [details] [associations]
symbol:orf19.5381 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001308 "negative
regulation of chromatin silencing involved in replicative cell
aging" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
CGD:CAL0004399 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AACQ01000050 RefSeq:XP_717758.1
ProteinModelPortal:Q5A835 GeneID:3640530 KEGG:cal:CaO19.5381
Uniprot:Q5A835
Length = 783
Score = 247 (92.0 bits), Expect = 2.8e-17, Sum P(3) = 2.8e-17
Identities = 84/343 (24%), Positives = 155/343 (45%)
Query: 422 EELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLM 481
E + +NA ++I + VE +D G+ IQ+ + E+++ + + ++
Sbjct: 464 ELINETNATLI-FNEIYFKAVELMIDPFGNYLIQKLFTMINLEQRLVLINQCSNELFRIA 522
Query: 482 TDVFGNYVIQKFFEHGSPDQRKELAEK-LVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 540
D G +QK + ++ E+ + L ++ LS + G V+QK L
Sbjct: 523 LDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVVLSRDLNGNHVVQKILTKFN------ 576
Query: 541 LVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQR 600
+ D + RD H Q +FI + + ++ H +GC V+QR
Sbjct: 577 -TISSDSNSSDSNRD-GAQHQNQN----------QFIFDIIQANLLYIACHRHGCCVLQR 624
Query: 601 VLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLER---GKSYERTQ------IL 651
L++ ++QQ Q + EI + L+ D YGNYV Q+VL + G + T I+
Sbjct: 625 CLDY-GNKQQCQQLSQEIAKHTIKLSLDPYGNYVVQYVLNKYSVGGDAQNTDNQVIDIII 683
Query: 652 SKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANY 711
++ +Q+S HK+ SNV+EKCL+ + ++L+ I+ + N L + D + NY
Sbjct: 684 QEIKSNFIQLSLHKFGSNVIEKCLKISSIS-KDLIDNLIVLDHGQAFNQL--LNDPFGNY 740
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQ 754
V+Q L+ N + E L + +K +G+ I+ + +Q
Sbjct: 741 VLQTSLDVANLEQFEQLSKILLPLLPNIKSTPHGRRILNKIQQ 783
Score = 224 (83.9 bits), Expect = 9.5e-15, Sum P(3) = 9.5e-15
Identities = 71/288 (24%), Positives = 134/288 (46%)
Query: 433 ELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQK 492
+L D G I+ DQHG RF+Q++L + +F E+ A +LM D FGNY+IQK
Sbjct: 440 KLQDFTGSILTLCKDQHGCRFLQREL--INETNATLIFNEIYFKAVELMIDPFGNYLIQK 497
Query: 493 FFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMR 551
F + +QR L + ++ ++L +G R +QK ++VIE +++ +++ L +++
Sbjct: 498 LFTMINLEQRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVV 557
Query: 552 CVRDQNGNHVIQKCIECVPAEKIEFIIS-AFRGQVATLSTHPYGCRVIQRVLEHCSDEQQ 610
RD NGNHV+QK + + S + R + + + +IQ L + + +
Sbjct: 558 LSRDLNGNHVVQKILTKFNTISSDSNSSDSNRDGAQHQNQNQFIFDIIQANLLYIACHRH 617
Query: 611 GQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNV 670
G C++ L+ Q + +H ++ L +VQ +KY+
Sbjct: 618 GCCVLQRCLDYGNKQQCQQLSQEIAKHTIKLS--------LDPYGNYVVQYVLNKYSVG- 668
Query: 671 VEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILE 718
GD + + +I+ Q E N + + ++ + V++K L+
Sbjct: 669 -------GDAQNTDNQVIDIIIQ-EIKSNFIQLSLHKFGSNVIEKCLK 708
Score = 145 (56.1 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 40/141 (28%), Positives = 76/141 (53%)
Query: 581 FRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLE 640
F G + TL +GCR +QR L +E I +EI A L D +GNY+ Q +
Sbjct: 444 FTGSILTLCKDQHGCRFLQREL---INETNATLIFNEIYFKAVELMIDPFGNYLIQKLFT 500
Query: 641 RGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNL 700
+R ++++ + ++ +++ + + ++K ++ +T E E+ EI+ ++ + N+
Sbjct: 501 MINLEQRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNE-EI---EIITRNLYS-NI 555
Query: 701 LVMMKDQYANYVVQKILEKCN 721
+V+ +D N+VVQKIL K N
Sbjct: 556 VVLSRDLNGNHVVQKILTKFN 576
Score = 52 (23.4 bits), Expect = 2.8e-17, Sum P(3) = 2.8e-17
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 144 GKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQPS 185
G + SF+ PS+ SP PP+ + P+ P P+ QP+
Sbjct: 303 GDYQSFDKIPSVPSPA--PPIIQESQVPTPAPVPV-PAPQPN 341
Score = 41 (19.5 bits), Expect = 3.7e-16, Sum P(3) = 3.7e-16
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 207 PPFVAGYPSQGPVPMP 222
PP G PS P P P
Sbjct: 270 PPHSMGLPSFSPFPHP 285
Score = 39 (18.8 bits), Expect = 2.8e-17, Sum P(3) = 2.8e-17
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 31 SNNGPAAVSF--SSSPCPDGTETSRNPRIDDT 60
S+N P+ ++ +S+ C + TE+ N I+ T
Sbjct: 55 SSNDPSFLNGENTSANCTNSTESDDNELIEPT 86
>WB|WBGene00001402 [details] [associations]
symbol:fbf-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IPI] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0030154 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011 GO:GO:0007283
GO:GO:0051729 GO:GO:0040035 GO:GO:0003730 GO:GO:0045132
GO:GO:0040027 GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078 EMBL:FO080717
PIR:T16128 RefSeq:NP_495220.1 PDB:3K5Q PDB:3K5Y PDB:3K5Z PDB:3K61
PDB:3K62 PDB:3K64 PDB:3QG9 PDB:3QGB PDB:3QGC PDB:3V6Y PDB:3V74
PDBsum:3K5Q PDBsum:3K5Y PDBsum:3K5Z PDBsum:3K61 PDBsum:3K62
PDBsum:3K64 PDBsum:3QG9 PDBsum:3QGB PDBsum:3QGC PDBsum:3V6Y
PDBsum:3V74 ProteinModelPortal:Q09312 SMR:Q09312 MINT:MINT-3385835
STRING:Q09312 EnsemblMetazoa:F21H12.5 GeneID:174017
KEGG:cel:CELE_F21H12.5 UCSC:F21H12.5 CTD:174017 WormBase:F21H12.5
InParanoid:Q09312 OMA:FALENID EvolutionaryTrace:Q09312
NextBio:882143 Uniprot:Q09312
Length = 632
Score = 239 (89.2 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 69/263 (26%), Positives = 133/263 (50%)
Query: 431 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 484
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 182 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 241
Query: 485 FGNYVIQKFF-------EHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 537
FGNY++Q + G ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 242 FGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 301
Query: 538 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 593
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + + Y
Sbjct: 302 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKY 361
Query: 594 GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK 653
GCRV+Q ++E + + VD + +A L + +T V R + + +
Sbjct: 362 GCRVVQTIIEKLTADSMN---VD-LTSAAQNLRERALQRLMTS-VTNRCQELATNEYANY 416
Query: 654 LAGKIVQMSQHK-YASNVVEKCL 675
+ IV Y ++EKCL
Sbjct: 417 IIQHIVSNDDLAVYRECIIEKCL 439
Score = 151 (58.2 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 85/327 (25%), Positives = 146/327 (44%)
Query: 420 FLEE-LKSS--NAQKFELSD-IAGRIVEF---SVDQHGSRFIQQKLEHCSA--EEKVSVF 470
FLE+ +K S + QKF+L + + GR +F S + G+ +Q + A ++ +
Sbjct: 206 FLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKR 265
Query: 471 KEVLPH-ASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYG-C----- 523
+E L + S MTD+ + + + + LA KLV Q LP ++ C
Sbjct: 266 QEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLV-QALPRDARLIAICVDQNA 324
Query: 524 -RVIQKALEVIELHQKSQLV--LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISA 580
VIQK + VI L +V + H+ + D+ G V+Q IE + A+ + +++
Sbjct: 325 NHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTS 384
Query: 581 FRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLE 640
+ R +QR++ ++ Q LA ++Y NY+ QH++
Sbjct: 385 AAQNLRE--------RALQRLMTSVTNRCQ-------------ELATNEYANYIIQHIVS 423
Query: 641 RGK-SYERTQILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILG-----Q 693
+ R I+ K L ++ +SQ K+AS+VVEK + +++EI
Sbjct: 424 NDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHP 483
Query: 694 SEENDNLLVMMKDQYANYVVQKILEKC 720
D L +MM Q+ NYVVQ +L C
Sbjct: 484 DTGKDALDIMMFHQFGNYVVQCMLTIC 510
>WB|WBGene00001401 [details] [associations]
symbol:fbf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IGI;IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0043073 "germ cell nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0010608 "posttranscriptional regulation of gene expression"
evidence=IGI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 230 (86.0 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 68/263 (25%), Positives = 133/263 (50%)
Query: 431 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 484
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 180 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 239
Query: 485 FGNYVIQKF-------FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 537
FGNY +Q+ ++ + ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 240 FGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 299
Query: 538 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 593
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + Y
Sbjct: 300 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKY 359
Query: 594 GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK 653
GCRV+Q ++E + + VD + +A L + +T V R + + +
Sbjct: 360 GCRVVQTIIEKLTADSIN---VD-LTSAAQHLRERALQRLMTS-VTNRCQELATNEYANY 414
Query: 654 LAGKIVQMSQHK-YASNVVEKCL 675
+ IV Y ++EKCL
Sbjct: 415 IIQHIVSNDDLAVYRECIIEKCL 437
Score = 158 (60.7 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 85/327 (25%), Positives = 147/327 (44%)
Query: 420 FLEE-LKSS--NAQKFELSD-IAGRIVEF---SVDQHGSRFIQQKLEHCSA---EEKVSV 469
FLE+ +K S + QKF+L + + GR +F S + G+ F+Q+ + ++ +
Sbjct: 204 FLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEIIGMSLTTYDDDNIKR 263
Query: 470 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYG-C----- 523
+++ S MTD+ + + + + LA KLV Q LP ++ C
Sbjct: 264 QEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLV-QALPRDARLIAICVDQNA 322
Query: 524 -RVIQKALEVIELHQKSQLV--LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISA 580
VIQK + VI L +V + H+ + D+ G V+Q IE + A+ I +++
Sbjct: 323 NHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTIIEKLTADSINVDLTS 382
Query: 581 FRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLE 640
+ R +QR++ ++ Q LA ++Y NY+ QH++
Sbjct: 383 AAQHLRE--------RALQRLMTSVTNRCQ-------------ELATNEYANYIIQHIVS 421
Query: 641 RGK-SYERTQILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEIL-GQSEE- 696
+ R I+ K L ++ +SQ K+AS+VVEK + +++EI G
Sbjct: 422 NDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPMELLAEMMDEIFDGYMPHP 481
Query: 697 ---NDNLLVMMKDQYANYVVQKILEKC 720
D L +MM Q+ NYVVQ +L C
Sbjct: 482 GTGKDALDIMMFHQFGNYVVQCMLTIC 508
>UNIPROTKB|Q9N5M6 [details] [associations]
symbol:fbf-1 "Fem-3 mRNA-binding factor 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 230 (86.0 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 68/263 (25%), Positives = 133/263 (50%)
Query: 431 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 484
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 180 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 239
Query: 485 FGNYVIQKF-------FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 537
FGNY +Q+ ++ + ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 240 FGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 299
Query: 538 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 593
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + Y
Sbjct: 300 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKY 359
Query: 594 GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK 653
GCRV+Q ++E + + VD + +A L + +T V R + + +
Sbjct: 360 GCRVVQTIIEKLTADSIN---VD-LTSAAQHLRERALQRLMTS-VTNRCQELATNEYANY 414
Query: 654 LAGKIVQMSQHK-YASNVVEKCL 675
+ IV Y ++EKCL
Sbjct: 415 IIQHIVSNDDLAVYRECIIEKCL 437
Score = 158 (60.7 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 85/327 (25%), Positives = 147/327 (44%)
Query: 420 FLEE-LKSS--NAQKFELSD-IAGRIVEF---SVDQHGSRFIQQKLEHCSA---EEKVSV 469
FLE+ +K S + QKF+L + + GR +F S + G+ F+Q+ + ++ +
Sbjct: 204 FLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEIIGMSLTTYDDDNIKR 263
Query: 470 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYG-C----- 523
+++ S MTD+ + + + + LA KLV Q LP ++ C
Sbjct: 264 QEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLV-QALPRDARLIAICVDQNA 322
Query: 524 -RVIQKALEVIELHQKSQLV--LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISA 580
VIQK + VI L +V + H+ + D+ G V+Q IE + A+ I +++
Sbjct: 323 NHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTIIEKLTADSINVDLTS 382
Query: 581 FRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLE 640
+ R +QR++ ++ Q LA ++Y NY+ QH++
Sbjct: 383 AAQHLRE--------RALQRLMTSVTNRCQ-------------ELATNEYANYIIQHIVS 421
Query: 641 RGK-SYERTQILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEIL-GQSEE- 696
+ R I+ K L ++ +SQ K+AS+VVEK + +++EI G
Sbjct: 422 NDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPMELLAEMMDEIFDGYMPHP 481
Query: 697 ---NDNLLVMMKDQYANYVVQKILEKC 720
D L +MM Q+ NYVVQ +L C
Sbjct: 482 GTGKDALDIMMFHQFGNYVVQCMLTIC 508
>WB|WBGene00004241 [details] [associations]
symbol:puf-5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0035188
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477
GO:GO:0003723 GO:GO:0000910 EMBL:Z49967 GO:GO:0043186
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
PIR:T22634 RefSeq:NP_495814.1 ProteinModelPortal:Q20757 SMR:Q20757
STRING:Q20757 PaxDb:Q20757 EnsemblMetazoa:F54C9.8 GeneID:174373
KEGG:cel:CELE_F54C9.8 UCSC:F54C9.8 CTD:174373 WormBase:F54C9.8
InParanoid:Q20757 OMA:MISICIS NextBio:883756 Uniprot:Q20757
Length = 553
Score = 224 (83.9 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 58/242 (23%), Positives = 118/242 (48%)
Query: 434 LSDIA--GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF----GN 487
L D+ G +++F++D+ G +F+++ E V + L + T + GN
Sbjct: 144 LQDVVSNGSLIDFAMDRTGVKFLERHFPEDHDNEMHFVLFDKLTEQGAVFTSLCRSAAGN 203
Query: 488 YVIQKFFEHGSPDQRKELAEKLVGQ-VLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 546
++IQKF EH + D+++ L K+ ++ + L + CRV+Q +++ ++ +LV ++
Sbjct: 204 FIIQKFVEHATLDEQERLVRKMCDNGLIEMCLDKFACRVVQMSIQKFDVSIAMKLVEKIS 263
Query: 547 G-HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF-RGQ-VATLSTHPYGCRVIQRVLE 603
+ DQ HV+QK ++ +P F + R + T+ YGCR++Q+ ++
Sbjct: 264 SLDFLPLCTDQCAIHVLQKVVKLLPISAWSFFVKFLCRDDNLMTVCQDKYGCRLVQQTID 323
Query: 604 HCSDEQQGQC----------IVDEILESAFALAQDQYGNYVTQHVLERGKSYE--RTQIL 651
SD + C ++ + + F L+ +++ NYV Q+V++ E R I+
Sbjct: 324 KLSDNPKLHCFNTRLQLLHGLMTSVARNCFRLSSNEFANYVVQYVIKSSGVMEMYRDTII 383
Query: 652 SK 653
K
Sbjct: 384 EK 385
Score = 141 (54.7 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 40/135 (29%), Positives = 69/135 (51%)
Query: 614 IVDEILESAFALAQDQYGNYVTQHVLERGKSYE--RTQILSK-LAGKIVQMSQHKYASNV 670
++ + + F L+ +++ NYV Q+V++ E R I+ K L I+ MSQ KYAS+V
Sbjct: 344 LMTSVARNCFRLSSNEFANYVVQYVIKSSGVMEMYRDTIIEKCLLRNILSMSQDKYASHV 403
Query: 671 VEKCLEYGDTAERELLIEEILG-----QSEENDNLLVMMKDQYANYVVQKILEKCNEKL- 724
VE + +++EI Q D L +++ QY NYVVQ+++ C L
Sbjct: 404 VEGAFLFAPPLLLSEMMDEIFDGYVKDQETNRDALDILLFHQYGNYVVQQMISICISALL 463
Query: 725 ----RETLISRIRVH 735
R+ + S +R++
Sbjct: 464 GKEERKMVASEMRLY 478
>POMBASE|SPBP35G2.14 [details] [associations]
symbol:SPBP35G2.14 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBP35G2.14 GO:GO:0005829 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:NP_595389.2
EnsemblFungi:SPBP35G2.14.1 GeneID:2541323 NextBio:20802433
Uniprot:Q9P789
Length = 1065
Score = 226 (84.6 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 79/321 (24%), Positives = 151/321 (47%)
Query: 433 ELSDIAGRIVEFS-------VDQHGSRFIQQKLEH--CSAEEKVSVFKEVLPHASKLMTD 483
EL+D A +I S ++ R +++++++ C+ EE + L S L +D
Sbjct: 725 ELTDFAAQIPSISKAFSSRRLNAPKLRQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSD 784
Query: 484 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 543
GN V+QK F++ S ++ + E++ + + + G QK ++V + +L+
Sbjct: 785 HLGNTVVQKLFDYCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIA 844
Query: 544 E-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 602
+ L ++ DQ GN+V+Q C++ A +F+ A Q ++ YG R ++ L
Sbjct: 845 KHLQPYIPLLFADQFGNYVVQTCLK-FGAPMNDFVFEAILNQFWVIAQSRYGSRAVRACL 903
Query: 603 EHCS-DEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQIL--SKLAGKIV 659
E E+Q + I + LA + G + +++E +Y IL + IV
Sbjct: 904 ESPDVTEEQRVLVAAAITVYSVHLAMNGNGTLLLTYLVEN-MNYPHIPILLTRRFVQDIV 962
Query: 660 QMSQHKYASNVVEKCLEY--GDTAERELLIEEILG-QSEENDNLL--VMMKDQYANYVVQ 714
++ H+ A N + K + GDTA +L+++ IL Q++ N N L ++ + Y +
Sbjct: 963 RVCTHRLAYNSLLKIISISQGDTACGDLVVDAILDTQNDLNPNSLEKILFEQTYGPSFIC 1022
Query: 715 KIL--EKCNEKLRETLISRIR 733
K+L E + R+ L S +R
Sbjct: 1023 KLLTHENISASHRQQLQSAVR 1043
Score = 53 (23.7 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 24/91 (26%), Positives = 36/91 (39%)
Query: 207 PPFVAGYPSQGPVPMPFDATSGSSF-NIRTT-SVSTGEGIPHIGSTQHQKFYGHQGLMLQ 264
PPF GYP +P + S SSF + T S S G I + +
Sbjct: 277 PPF--GYPPTTSSALPNASGSSSSFFGLPTAVSASAGTSFSDISPAAPKASLENNIASNA 334
Query: 265 SPFVDPLHMQYFQHPFGDAYNASVQHRLASS 295
S ++P+ + +F G ++ H ASS
Sbjct: 335 SSLLNPVGLDHFSAASG--WSRDFNHLPASS 363
Score = 44 (20.5 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 386 LPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFS 445
LP G++ T + + + T R S KHS S K L ++ G+ + F
Sbjct: 599 LPSGVSATT-VATTFSAYGTVSSIRML--SHKHSAFLNFDSVETAKHVLEELNGKRIFFG 655
Query: 446 VD 447
D
Sbjct: 656 SD 657
>WB|WBGene00004240 [details] [associations]
symbol:puf-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000016078 EMBL:FO081656 PIR:T33752 RefSeq:NP_500301.1
UniGene:Cel.28747 ProteinModelPortal:Q8I723 SMR:Q8I723
EnsemblMetazoa:M4.2 GeneID:191754 KEGG:cel:CELE_M4.2 UCSC:M4.2
CTD:191754 WormBase:M4.2 InParanoid:Q8I723 NextBio:950224
Uniprot:Q8I723
Length = 420
Score = 175 (66.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 54/172 (31%), Positives = 88/172 (51%)
Query: 527 QKAL-EVIELHQKSQLVLELDGHVMR--CVRDQNGNHVIQKCIECVPAEKIEFIISAFRG 583
QK + E + + S+L EL G + C+ DQNGNHVIQ+ ++ +P +F++ F
Sbjct: 224 QKIIVEYLAIVLASRLASELRGVDLTHACI-DQNGNHVIQQLLKTLPPSSWQFLVEFFSR 282
Query: 584 QV--ATLSTHPYGCRVIQRVLEHCSDEQQGQCI---VDEILESAFALAQDQYGNYVTQHV 638
+ Y CRVIQ LE S +Q + V I+ + LA +++ NYV +HV
Sbjct: 283 DTNFVEVCEDKYVCRVIQSTLETLSKREQLVALRRLVGVIIRNCGQLASNEFANYVVRHV 342
Query: 639 L---ERGKSYERTQILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELL 686
+ + + R I+ K L ++ MSQ KYAS+++ G + E++ L
Sbjct: 343 IKCDDAEMTIYRDVIIEKCLLQNLLSMSQEKYASHMIHVA---GQSTEQKWL 391
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 61/233 (26%), Positives = 116/233 (49%)
Query: 540 QLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEK----IEFIISAFRGQVAT-LS----T 590
QLV + + +C + GN +Q+ +EC AE+ +E++ ++A+ L T
Sbjct: 191 QLVADRVIFLDQC-KHMFGNFFVQRVLECSDAEEQKIIVEYLAIVLASRLASELRGVDLT 249
Query: 591 HPY----GCRVIQRVLEHCSDEQQGQCIVDEIL-ESAFA-LAQDQYGNYVTQHVLERGKS 644
H G VIQ++L+ Q +V+ ++ F + +D+Y V Q LE
Sbjct: 250 HACIDQNGNHVIQQLLKTLPPSSW-QFLVEFFSRDTNFVEVCEDKYVCRVIQSTLETLSK 308
Query: 645 YERTQILSKLAGKIV----QMSQHKYASNVVE---KCLEYGDTAERELLIEEILGQSEEN 697
E+ L +L G I+ Q++ +++A+ VV KC + T R+++IE+ L Q
Sbjct: 309 REQLVALRRLVGVIIRNCGQLASNEFANYVVRHVIKCDDAEMTIYRDVIIEKCLLQ---- 364
Query: 698 DNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVA 750
NLL M +++YA++++ + +K E + R+ + L++++ GK I+A
Sbjct: 365 -NLLSMSQEKYASHMIHVAGQSTEQKWLERIRERVVRNASRLERFSSGKKIIA 416
Score = 90 (36.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 37/162 (22%), Positives = 73/162 (45%)
Query: 356 QFPTSPIASPVLPSSPVGSTSQLGLRHEMR-LPQGLN-RNTGIYSGWQGQRTFEGQRTFE 413
Q P +P + + T++ G H +R L G N +++GI++ R+ + T
Sbjct: 77 QRPDTPRYQQRASTPSMTPTARFGY-HGIRPLFNGYNQKHSGIFNS-PANRSIVQKSTLP 134
Query: 414 DSKKHSFLEELKSSNAQKFELSDIA--GRIVEFSVDQHGSRFIQ-QKLEHCSAEEKVSVF 470
+ + + A L D+ ++EF D++G RF+Q Q E C E +F
Sbjct: 135 -----IWASDEHGNVADTVTLDDVIQMDSLMEFMKDKNGCRFLQDQYSEDCHVESHQKIF 189
Query: 471 KEVLPHASKLMTD---VFGNYVIQKFFEHGSPDQRKELAEKL 509
++++ + +FGN+ +Q+ E +++K + E L
Sbjct: 190 EQLVADRVIFLDQCKHMFGNFFVQRVLECSDAEEQKIIVEYL 231
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 209 (78.6 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 70/261 (26%), Positives = 125/261 (47%)
Query: 469 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQ---VLPLSLQMYGCRV 525
+F ++ H +LM D +G+ V +K E + +Q + + ++ + + L + +G
Sbjct: 183 IFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITRVLDIVLEEPFEFVRLCVHTHGTHA 242
Query: 526 IQKALEVIELHQKSQLVLELDGHV-MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ 584
IQ + + ++ +E +V + +D + VI C +++
Sbjct: 243 IQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHRVILFCFNQFSPSHTRYLLEVIVQN 302
Query: 585 VATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYG----------NYV 634
++ GC ++++++ S E + ++ EI+ A L + YG NYV
Sbjct: 303 CYQVAIDQNGCCMLKKLIRQSSRELRDP-LIKEIISIAVRLCGNCYGTLTPKSLLVRNYV 361
Query: 635 TQHVLERGKSYERTQILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ 693
Q++L R K YE T LSK L G VQ+S KY S+VV+KCLE + + R + I E+L
Sbjct: 362 VQYLL-RLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLESREFSSRRI-IAELLS- 418
Query: 694 SEENDNLLVMMKDQYANYVVQ 714
+ D+LLV D Y +YV+Q
Sbjct: 419 --DIDSLLV---DPYGDYVIQ 434
Score = 175 (66.7 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 57/206 (27%), Positives = 90/206 (43%)
Query: 442 VEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT-DVFGNYVIQKFFEHGSPD 500
V V HG+ IQ + +EE++S F E L + S L+T DV + VI F SP
Sbjct: 231 VRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHRVILFCFNQFSPS 290
Query: 501 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNG-- 558
+ L E +V +++ GC +++K + + L+ E+ +R + G
Sbjct: 291 HTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISIAVRLCGNCYGTL 350
Query: 559 --------NHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQ 610
N+V+Q + E + G LS YG V+Q+ LE S E
Sbjct: 351 TPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLE--SREFS 408
Query: 611 GQCIVDEILESAFALAQDQYGNYVTQ 636
+ I+ E+L +L D YG+YV Q
Sbjct: 409 SRRIIAELLSDIDSLLVDPYGDYVIQ 434
Score = 130 (50.8 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 59/278 (21%), Positives = 126/278 (45%)
Query: 483 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ-- 540
D ++++Q G + ++ + L+ V L L YG +V +K +E Q ++
Sbjct: 161 DGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITRVL 220
Query: 541 -LVLELDGHVMR-CVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 598
+VLE +R CV +G H IQ + + +E+ IS F + +S +
Sbjct: 221 DIVLEEPFEFVRLCVHT-HGTHAIQGLMRSLCSEEQ---ISRFMETLCYVSLLLTKDVIA 276
Query: 599 QRVLEHCSDE---QQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLA 655
RV+ C ++ + +++ I+++ + +A DQ G + + ++ + R ++ ++
Sbjct: 277 HRVILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEII 336
Query: 656 GKIVQMSQHKYASNVVEKCLEYGDTAERELLIE--EILGQ-SEEND-NLLVMMKDQYANY 711
V++ + Y + + L + L ++ E+ S+ D N + + D+Y ++
Sbjct: 337 SIAVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSH 396
Query: 712 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIV 749
VVQK LE E +I+ + D+L YG +++
Sbjct: 397 VVQKCLES-REFSSRRIIAELLSDIDSLLVDPYGDYVI 433
>TAIR|locus:2168529 [details] [associations]
symbol:PUM16 "pumilio 16" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB016890 IPI:IPI00533013 RefSeq:NP_200736.1 UniGene:At.65693
ProteinModelPortal:Q9FIE9 PRIDE:Q9FIE9 EnsemblPlants:AT5G59280.1
GeneID:836046 KEGG:ath:AT5G59280 TAIR:At5g59280
HOGENOM:HOG000152208 OMA:CTRNIAD Genevestigator:Q9FIE9
Uniprot:Q9FIE9
Length = 332
Score = 202 (76.2 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 54/189 (28%), Positives = 91/189 (48%)
Query: 540 QLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 599
+ ++ L HVM D+ ++V + + +K E + L+ YGC +
Sbjct: 116 EAIMRLFIHVMT---DKYASYVTIQGMRVFQQDKRELMYDQILRYACFLAGDQYGCIALN 172
Query: 600 RVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 659
++ D ++D + +A L+ D YGN+V QHVL+ S I KL G V
Sbjct: 173 EIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCV 232
Query: 660 QMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEK 719
++S KY S +VE+ LE GD ++++ + ++E L+ + + +Y N+VV K LE
Sbjct: 233 ELSFKKYGSYIVERLLEAGDVPMATVVLDLLACKTEM---LIRLARSEYGNFVVCKALEL 289
Query: 720 CNEKLRETL 728
NE L L
Sbjct: 290 TNEILTADL 298
Score = 147 (56.8 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 46/200 (23%), Positives = 94/200 (47%)
Query: 445 SVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKE 504
+ +++GS+ +Q KL S + V F+ ++ +MTD + +YV + D+R+
Sbjct: 91 TTNKNGSKTLQ-KLMGMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQDKREL 149
Query: 505 LAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 563
+ ++++ L+ YGC + + + ++ + + + QL+ + + + D GN V+Q
Sbjct: 150 MYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQ 209
Query: 564 KCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL---E 620
++ + I G LS YG +++R+LE D ++D + E
Sbjct: 210 HVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLE-AGDVPMATVVLDLLACKTE 268
Query: 621 SAFALAQDQYGNYVTQHVLE 640
LA+ +YGN+V LE
Sbjct: 269 MLIRLARSEYGNFVVCKALE 288
>TAIR|locus:2167771 [details] [associations]
symbol:PUM13 "pumilio 13" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 IPI:IPI00522991 RefSeq:NP_199123.1
UniGene:At.55330 ProteinModelPortal:Q9FMH4 SMR:Q9FMH4 PaxDb:Q9FMH4
PRIDE:Q9FMH4 EnsemblPlants:AT5G43090.1 GeneID:834325
KEGG:ath:AT5G43090 TAIR:At5g43090 HOGENOM:HOG000136003
InParanoid:Q9FMH4 OMA:NGERNIW PhylomeDB:Q9FMH4
ProtClustDB:CLSN2686651 Genevestigator:Q9FMH4 Uniprot:Q9FMH4
Length = 527
Score = 205 (77.2 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 70/323 (21%), Positives = 148/323 (45%)
Query: 439 GRIVEFSV--DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 496
GR FS+ D+ S+ +++ + + E +F ++ +LM D FGN V++
Sbjct: 209 GRGSYFSIATDRVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGK 268
Query: 497 GSPDQR---KELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQL--VLELDGHV-M 550
S +Q ++ + + + + + G IQ L I +Q+ +++ V +
Sbjct: 269 CSSEQIILIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVAL 328
Query: 551 RCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL--EHCSDE 608
+ R+ N +VI C + + ++ ++ GC ++Q+ E +
Sbjct: 329 QLTRNTNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNH 388
Query: 609 QQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYAS 668
+ Q ++ E++E A L + +GNYV Q+V+E +E +++KL ++++KY S
Sbjct: 389 EIRQRLISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGS 448
Query: 669 NVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETL 728
+VV+K L+ + ++++ + G D LL+ D + NYV+Q E +R+ L
Sbjct: 449 HVVQKLLKLRGIDSKLIVVDLLRGI----DTLLL---DPFGNYVIQTAWFVSKEDVRQML 501
Query: 729 ISRIRVHCDALKKYTYGKHIVAR 751
I + ++ +G I+ +
Sbjct: 502 RYYIERNIRLMRCNKFGNKILEK 524
Score = 130 (50.8 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 54/243 (22%), Positives = 109/243 (44%)
Query: 524 RVIQKALE-VIELHQKSQLVLELDGHVMR-C--VRDQNGNHVIQKCIECVPAEKIEFIIS 579
RV K LE I + K + + DG ++ C + D GN V++ I +E+I I+
Sbjct: 220 RVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQIILIVD 279
Query: 580 AFRGQVA---TLSTHPYGCRVIQRVLEHCSDEQQGQC--IVDEILESAFALAQDQYGNYV 634
++ + +P G IQ +L + Q I+D I A L ++ YV
Sbjct: 280 VVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRNTNAKYV 339
Query: 635 TQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQS 694
S + ++L ++ Q++ + ++++C + E+ + ++ S
Sbjct: 340 ILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIR-QRLI--S 396
Query: 695 EENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQ 754
E ++ L + + + NYVVQ ++E N+ + L++++ + L + YG H+V + +
Sbjct: 397 EVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLK 456
Query: 755 LYG 757
L G
Sbjct: 457 LRG 459
>POMBASE|SPBC56F2.08c [details] [associations]
symbol:SPBC56F2.08c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBC56F2.08c GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000288 eggNOG:COG5099
OrthoDB:EOG4MWCFG PIR:T40536 RefSeq:NP_596709.1
ProteinModelPortal:O60059 EnsemblFungi:SPBC56F2.08c.1
GeneID:2540913 KEGG:spo:SPBC56F2.08c NextBio:20802028
Uniprot:O60059
Length = 661
Score = 194 (73.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 63/251 (25%), Positives = 119/251 (47%)
Query: 464 EEKVSVF-KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYG 522
+E++ V + +L ++L +D GN V+QKFFE+ S ++ + E++ + + + G
Sbjct: 182 QEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYLAAIGIHKNG 241
Query: 523 CRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF 581
QK ++V ++ L+++ L + DQ GN+V Q C+ K F+
Sbjct: 242 TWAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCLR-FKYPKNTFLFEVM 300
Query: 582 RGQVATLSTHPYGCRVIQRVLEH--CSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVL 639
+ +G R I+ LE+ + EQQ +V I+ ++ LA + G + +L
Sbjct: 301 ARHCCEIGQSRFGARAIRACLENENATFEQQA-LVVASIIINSHLLATNSNGMLLLTWLL 359
Query: 640 ERGKSYERTQILS-KLAGKIVQMSQHKYASNVVEKCLEYGDTAE-RELLIEEILGQSEEN 697
+ R ++L+ LA + HK AS ++ K + E R LL++ + E
Sbjct: 360 DNSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLINNKQEPESRNLLLKNLF--FSEK 417
Query: 698 DNLLV-MMKDQ 707
DN+L +++DQ
Sbjct: 418 DNVLTYILQDQ 428
>TAIR|locus:2167786 [details] [associations]
symbol:PUM14 "pumilio 14" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 HOGENOM:HOG000136003
ProtClustDB:CLSN2686651 EMBL:DQ056705 IPI:IPI00526385
RefSeq:NP_199125.2 UniGene:At.55331 ProteinModelPortal:Q4PSD1
SMR:Q4PSD1 PRIDE:Q4PSD1 EnsemblPlants:AT5G43110.1 GeneID:834328
KEGG:ath:AT5G43110 TAIR:At5g43110 InParanoid:Q4PSD1
PhylomeDB:Q4PSD1 Genevestigator:Q4PSD1 Uniprot:Q4PSD1
Length = 518
Score = 194 (73.4 bits), Expect = 4.7e-11, Sum P(3) = 4.7e-11
Identities = 76/333 (22%), Positives = 145/333 (43%)
Query: 432 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQ 491
F+ + F+ D+ S + + + E +++ ++ +LM D +G+ V+Q
Sbjct: 196 FDYNQCQASFSAFAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQ 255
Query: 492 KFFEHGSPDQRKELAEKLVGQVLP---LSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 548
S +Q +L + + Q+ + + G IQ L I K Q+ +D
Sbjct: 256 LLMRRCSSEQIVQLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVD-- 313
Query: 549 VMRCVRDQ--NGNH---VIQKCIECVPAE---KIEFIISAFRGQVATLSTHPYGCRVIQR 600
V+R V Q NH VI C P +E I+ Q+A + H GC ++Q
Sbjct: 314 VVRTVALQLSKSNHAIFVILACFRLFPLHCRLLLELIVQNCH-QIA-IDQH--GCCLLQL 369
Query: 601 VL--EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKI 658
+ + + Q ++ E + +A L + YGNYV Q+++E Y ++ +L G
Sbjct: 370 CFNKDRVPNLEIRQRLIMEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNY 429
Query: 659 VQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILE 718
++++KY S+ V+K L+ R ++I+ + E D LL+ D + NYV+Q
Sbjct: 430 AHLARNKYGSHAVQKLLKLRWIDSRVIVIDLL----REIDTLLL---DPFGNYVIQTAWF 482
Query: 719 KCNEKLRETLISRIRVHCDALKKYTYGKHIVAR 751
+ +R L I + ++ +G ++ +
Sbjct: 483 VSKDDVRRMLRYHIERNIPMMRCNKFGNKVLEK 515
Score = 39 (18.8 bits), Expect = 4.7e-11, Sum P(3) = 4.7e-11
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 410 RTFEDSKKHSFLEELKSS 427
R E+ ++H++L +L+ S
Sbjct: 119 RELEELQRHNYLNQLRMS 136
Score = 39 (18.8 bits), Expect = 4.7e-11, Sum P(3) = 4.7e-11
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 298 NGALADPSSKKEPIVAAYMGDQNLQSSLNGG 328
N +A SS+ +PI + + +N + +N G
Sbjct: 24 NLTMASSSSQPQPISSPFHQPENQVNRVNPG 54
>ASPGD|ASPL0000066087 [details] [associations]
symbol:AN7474 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304
eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:XP_680743.1
ProteinModelPortal:Q5AW56 EnsemblFungi:CADANIAT00000567
GeneID:2869548 KEGG:ani:AN7474.2 HOGENOM:HOG000182368 OMA:RACLESH
Uniprot:Q5AW56
Length = 1175
Score = 183 (69.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 68/328 (20%), Positives = 150/328 (45%)
Query: 413 EDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEH--CSAEEKVSVF 470
E +K ++ +++ S E+ IA D R I++++++ CS +E
Sbjct: 619 ETTKINASIQQAISYQEFSDEIPPIAEPNQTRMFDAPRLRDIRKRIDNGNCSIQEIEETA 678
Query: 471 KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL 530
+LP ++L +D GN V+QK FE+ S ++ + + + + + G QK +
Sbjct: 679 IAMLPEIAELASDYLGNTVVQKLFEYSSEPIKERILVPIAPHLGEIGVHKNGTWAAQKII 738
Query: 531 EVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 589
+V + + +++++ L + + DQ GN+V+Q C+ + +F+ ++ ++
Sbjct: 739 DVAKTPAQMRMIVDALRPYTVPLFLDQYGNYVLQCCLR-FGSPYNDFVFETMLSRMWEIA 797
Query: 590 THPYGCRVIQRVLE-HCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGK-SYER 647
+G R ++ LE H + + Q + + I + LA + G + L+ + R
Sbjct: 798 QGRFGARAMRACLESHHATKDQQRMLAAAIALHSVQLATNANGALLLTWFLDTCTFPHRR 857
Query: 648 TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQ 707
T + +L +V + HK A V K + + E ++ + L S ++ L ++ DQ
Sbjct: 858 TVLAPRLVPHLVHLCTHKVAYLTVLKVINQRNEPEARNIVLKALFFSPGDEVLEKILSDQ 917
Query: 708 YANY-VVQKILEK-C-NEKLRETLISRI 732
+ ++ K+L C +E +R ++ +
Sbjct: 918 TSGATLIFKVLTTPCFDESMRPEVVKNV 945
Score = 53 (23.7 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 36/142 (25%), Positives = 51/142 (35%)
Query: 130 NNAHNGMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYPSFQPSG--A 187
+ A NG + + S F +N L P + + PS +PF P+ SG
Sbjct: 126 SGAMNGPARRTRAGTVPSRFSPVGVLNEANLQQPFVSQSSRPTPSTSPFRPTGM-SGIDT 184
Query: 188 GVYPSQYNVGGYA-----LNSALFPPFVAGYPSQGPV-PMPFDAT--SGSSFNIRTTSVS 239
GV P GG L + P S GP P F +G TS+
Sbjct: 185 GVKPPTTIGGGSTGSLSRLRAGSMPQRTNLLGSAGPFGPSLFSTNWATGRDRATTLTSIR 244
Query: 240 TGEGIPHIGSTQHQKFYGHQGL 261
+ EG P ++ Q + GL
Sbjct: 245 SSEG-P---ASPSQSSFSRDGL 262
>ZFIN|ZDB-GENE-030131-9808 [details] [associations]
symbol:si:ch211-241o7.5 "si:ch211-241o7.5"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
ZFIN:ZDB-GENE-030131-9808 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000015757
EMBL:CR628386 IPI:IPI00799550 Ensembl:ENSDART00000127277
ArrayExpress:E9QJ83 Bgee:E9QJ83 Uniprot:E9QJ83
Length = 601
Score = 172 (65.6 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 63/285 (22%), Positives = 127/285 (44%)
Query: 422 EELKSSNAQKFELSDIA-GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 480
++ K + K EL D+ G+I + +R +Q ++ S +++ VF E+ H +L
Sbjct: 134 DKQKRTKLMK-ELQDLVKGKIKTIAFAHDSTRVLQCFIQFGSDKQRKEVFDELKEHIVEL 192
Query: 481 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKS 539
+ +++KF +GS +Q E+ G+V + V++ A + L Q+
Sbjct: 193 SKSKYARNIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYAYNDKAILSQRL 252
Query: 540 QLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR------GQVATLSTHPY 593
L EL G+ ++ + ++K +E P K+E I+ + Q + H
Sbjct: 253 MLTEELYGNTFTVLKS-SVCPTLEKVLEANPG-KLESILDEMKQILTPMAQKEAVIKHSL 310
Query: 594 GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK 653
+V EH D+Q+ + +++ I E+ +A G VT H L G + +R I+
Sbjct: 311 VHKVFLDFFEHAPDKQRTE-MIESIREAVVYMAHTHDGARVTMHCLWHGTTKDRKVIVKT 369
Query: 654 LAGKIVQMSQHKYASNVVEKCLEYGDTAE--RELLIEEILGQSEE 696
+ I + + +YA V+ + D + ++++I E++ E
Sbjct: 370 MKSYIAKFAMGEYAHLVLLAAFDCIDDTKLVKQIIISEMVSSLSE 414
Score = 157 (60.3 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 66/322 (20%), Positives = 142/322 (44%)
Query: 387 PQGLNRNTGIYSGWQGQRTFEGQRTFE---DSKKHSFLEELKSSNAQKFELS-DIAGRIV 442
PQ NR + +R F G R + D +K +E K ++ +L+ R
Sbjct: 56 PQKFNRKP-TDGKFAKKRKFPGDRIKQEEGDERKKPKWDEFKQKK-KELKLNRQQTDRKE 113
Query: 443 EFSVDQHGSRFIQQ-KLEHCSAEEKVSVFKEVLPHAS-KLMTDVFGN---YVIQKFFEHG 497
+ + + + + + C +++ + KE+ K+ T F + V+Q F + G
Sbjct: 114 SYQIVSRAKQVWEMVRRKDCDKQKRTKLMKELQDLVKGKIKTIAFAHDSTRVLQCFIQFG 173
Query: 498 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 557
S QRKE+ ++L ++ LS Y +++K L Q +++L G V + +R
Sbjct: 174 SDKQRKEVFDELKEHIVELSKSKYARNIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSE 233
Query: 558 GNHVIQKCI--ECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIV 615
+ V++ + + ++++ + G T+ C +++VLE ++ + + I+
Sbjct: 234 ASSVVEYAYNDKAILSQRL-MLTEELYGNTFTVLKSSV-CPTLEKVLE--ANPGKLESIL 289
Query: 616 DEILESAFALAQDQYGNYVTQHVL---------ERGKSYERTQILSKLAGKIVQMSQHKY 666
DE+ + +AQ + V +H L E +RT+++ + +V M+
Sbjct: 290 DEMKQILTPMAQKEA---VIKHSLVHKVFLDFFEHAPDKQRTEMIESIREAVVYMAHTHD 346
Query: 667 ASNVVEKCLEYGDTAERELLIE 688
+ V CL +G T +R+++++
Sbjct: 347 GARVTMHCLWHGTTKDRKVIVK 368
Score = 133 (51.9 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 44/169 (26%), Positives = 80/169 (47%)
Query: 582 RGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLER 641
+G++ T++ RV+Q ++ SD+Q+ + + DE+ E L++ +Y + + L
Sbjct: 150 KGKIKTIAFAHDSTRVLQCFIQFGSDKQRKE-VFDELKEHIVELSKSKYARNIVKKFLMY 208
Query: 642 GKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTA---ERELLIEEILGQSEEND 698
G + +++ GK+ QM +H AS+VVE Y D A +R +L EE+ G
Sbjct: 209 GSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYA--YNDKAILSQRLMLTEELYG------ 260
Query: 699 NLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKH 747
N ++K ++K+LE KL L ++ +K KH
Sbjct: 261 NTFTVLKSSVCP-TLEKVLEANPGKLESILDEMKQILTPMAQKEAVIKH 308
>UNIPROTKB|H0YDQ6 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957 ChiTaRS:PUM1
Ensembl:ENST00000530669 Bgee:H0YDQ6 Uniprot:H0YDQ6
Length = 76
Score = 147 (56.8 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 30/52 (57%), Positives = 37/52 (71%)
Query: 576 FIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQ 627
FII AF+GQV LSTHPYGCRVIQR+LEHC +Q I++E+ + L Q
Sbjct: 1 FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQ 51
>TAIR|locus:2144711 [details] [associations]
symbol:PUM21 "pumilio 21" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB020752
EMBL:AL353994 eggNOG:COG5099 IPI:IPI00537619 PIR:T49937
RefSeq:NP_196523.1 UniGene:At.54788 ProteinModelPortal:Q9LXC5
SMR:Q9LXC5 EnsemblPlants:AT5G09610.1 GeneID:830820
KEGG:ath:AT5G09610 TAIR:At5g09610 HOGENOM:HOG000153154
InParanoid:Q9LXC5 OMA:HQEPGES PhylomeDB:Q9LXC5
ProtClustDB:CLSN2916885 Genevestigator:Q9LXC5 Uniprot:Q9LXC5
Length = 517
Score = 160 (61.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 62/230 (26%), Positives = 101/230 (43%)
Query: 514 LPLSLQMYGCRVIQKALEVIELHQKSQ---LVLELDGHVMRCVRDQNGNHVIQKCIECVP 570
L L+ YG +AL ++ S L +D + + D+ G +I I V
Sbjct: 264 LHLATNQYG----SQALRILFRRSPSLDHLLFCAVDTNFFLLMSDKYGRGLIIPAIRAVD 319
Query: 571 AEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQY 630
K E + L+ GC + VL+ + I + + +A L+ D Y
Sbjct: 320 KTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRGIYR-DLIFECVANNADWLSFDPY 378
Query: 631 GNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 690
G +V Q++L T I +L G +++ + S VVEKCL+ D A R+ ++EE
Sbjct: 379 GTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKCLK-SDFA-RDQVLEEF 436
Query: 691 LGQSEENDNLLVMMKDQYANYVVQKILEKCNEK-----LRETLISRIRVH 735
G ++E + M D++ N+VVQ L EK LRE + ++R H
Sbjct: 437 RGNAKE---WVRMTTDKFGNFVVQSALRVMKEKEMRPLLRE-FVEKLRPH 482
Score = 56 (24.8 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 130 NNAHNGMDKNSYGHGKFSSFEAQPSMNSPGLTPPLYASAGTYMPSGNPFYP 180
NN + ++ + GH +SF A P S LT P S+ Y SG PF P
Sbjct: 151 NNNYPNLNVYNVGHISAASFNAPPFTPS-SLTQP-DDSSSRY--SGKPFPP 197
Score = 45 (20.9 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 21/76 (27%), Positives = 31/76 (40%)
Query: 154 SMNSPGLTPPLYASAGTYMPSGNPFYPSFQPSGAGVYPSQ--YNVGGYALNSALFPPFVA 211
++N+ PPL + N + S YP+ YNVG + S PPF
Sbjct: 118 NINNNNPNPPLLTAFDNLRLYANYNHQEPGESSNNNYPNLNVYNVGHISAASFNAPPFT- 176
Query: 212 GYPSQGPVPMPFDATS 227
PS + P D++S
Sbjct: 177 --PSS--LTQPDDSSS 188
>SGD|S000003851 [details] [associations]
symbol:JSN1 "Member of the Puf family of RNA-binding
proteins" species:4932 "Saccharomyces cerevisiae" [GO:0051654
"establishment of mitochondrion localization" evidence=IMP]
[GO:0034629 "cellular protein complex localization" evidence=IMP]
[GO:0032473 "external side of mitochondrial outer membrane"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000003851
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006943
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:L47993
GO:GO:0051654 GO:GO:0000288 EMBL:Z49591 eggNOG:COG5099
GO:GO:0034629 EMBL:L43493 PIR:S57112 RefSeq:NP_012624.1
ProteinModelPortal:P47135 SMR:P47135 DIP:DIP-1281N IntAct:P47135
MINT:MINT-405099 STRING:P47135 PaxDb:P47135 PeptideAtlas:P47135
EnsemblFungi:YJR091C GeneID:853553 KEGG:sce:YJR091C CYGD:YJR091c
GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136 OMA:CLEAHDI
OrthoDB:EOG4MWCFG NextBio:974290 Genevestigator:P47135
GermOnline:YJR091C GO:GO:0032473 Uniprot:P47135
Length = 1091
Score = 173 (66.0 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 64/274 (23%), Positives = 117/274 (42%)
Query: 473 VLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEV 532
+L +L +D GN ++QK FEH S + + K + + + G QK + +
Sbjct: 618 MLDELPELSSDYLGNTIVQKLFEHSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITM 677
Query: 533 IEL-HQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTH 591
Q Q+ + + + DQ GN+VIQ C+ +FI + + +
Sbjct: 678 AHTPRQIMQVTQGVKDYCTPLINDQFGNYVIQ-CVLKFGFPWNQFIFESIIANFWVIVQN 736
Query: 592 PYGCRVIQRVLEHCSDEQQGQCIVDEILESAFA--LAQDQYGNYVTQHVLERGKSYERTQ 649
YG R ++ LE Q IV + +A L+ + G + L+ R
Sbjct: 737 RYGARAVRACLEAHDIVTPEQSIVLSAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHS 796
Query: 650 ILS-KLAGKIVQMSQHKYASNVVEKCLEY-GDTAERELLIEEILGQSEENDN------LL 701
IL+ +L +IV++ H+ AS + K L Y GD R+++++ + G +D+
Sbjct: 797 ILAPRLTKRIVELCGHRLASLTILKVLNYRGDDNARKIILDSLFGNVNAHDSSPPKELTK 856
Query: 702 VMMKDQYANYVVQKILEK--CNEKLRETLISRIR 733
++ + Y V K+L + LR +I ++R
Sbjct: 857 LLCETNYGPTFVHKVLAMPLLEDDLRAHIIKQVR 890
Score = 42 (19.8 bits), Expect = 9.1e-08, Sum P(3) = 9.1e-08
Identities = 16/75 (21%), Positives = 26/75 (34%)
Query: 93 EEQKYQGRIMMQQYPSAXX----XXXXXXXXXXXXXXSLGMNNAHNGMDKNSYGHGKFSS 148
+EQ + G + QQ + S G +N +G + N+ HG ++
Sbjct: 459 QEQLFNGAVTFQQQGNVSIPVFNQQSQQSQHQNHSSGSAGFSNVLHGYNNNNSMHGNNNN 518
Query: 149 FEAQPSMNSPGLTPP 163
A P PP
Sbjct: 519 -SANEKEQCPFPLPP 532
Score = 41 (19.5 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 32/140 (22%), Positives = 47/140 (33%)
Query: 153 PSMNSPGLTPPLYASAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAG 212
P + PG+T P+Y N QP G Y S+ L++ L P A
Sbjct: 16 PEVIDPGITIPIYEEEYENNGESNSQLQQ-QPQKLGSYRSRAGKFSNTLSN-LLPSISAK 73
Query: 213 YP-----SQGPVPMPFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSP- 266
S G F +++ SS + T + T P G+ + P
Sbjct: 74 LHHSKKNSHGKNGAEFSSSNNSSQS--TVASKTPRASPSRSKMMESSI---DGVTMDRPG 128
Query: 267 -FVDPLHMQYFQHPFGDAYN 285
P M+ H F D+ N
Sbjct: 129 SLTPPQDMEKLVH-FPDSSN 147
Score = 40 (19.1 bits), Expect = 9.1e-08, Sum P(3) = 9.1e-08
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 31 SNNGPAAVSFSSSP-CPDGTETSRNPRIDDTNSK 63
+++G FSSS T S+ PR + SK
Sbjct: 80 NSHGKNGAEFSSSNNSSQSTVASKTPRASPSRSK 113
Score = 38 (18.4 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 16/61 (26%), Positives = 23/61 (37%)
Query: 2 NISEAPEANGSADVHVDPCVMDPQDIALISNNGPAAVSFSSSPCPDGTETSRNPRIDDTN 61
N+S PE +DP + P NNG + P G+ SR + +T
Sbjct: 11 NLSNIPEV-------IDPGITIPIYEEEYENNGESNSQLQQQPQKLGSYRSRAGKFSNTL 63
Query: 62 S 62
S
Sbjct: 64 S 64
Score = 38 (18.4 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 158 PGLTPPLYASAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGY 213
P L L+ A T+ GN P F SQ+ ++ SA F + GY
Sbjct: 456 PLLQEQLFNGAVTFQQQGNVSIPVFNQQSQ---QSQHQ--NHSSGSAGFSNVLHGY 506
>TAIR|locus:2164165 [details] [associations]
symbol:PUM18 "pumilio 18" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB019231
eggNOG:COG5099 HOGENOM:HOG000152208 EMBL:DQ056729 IPI:IPI00533181
RefSeq:NP_200819.1 UniGene:At.55636 ProteinModelPortal:Q9LVG3
SMR:Q9LVG3 EnsemblPlants:AT5G60110.1 GeneID:836133
KEGG:ath:AT5G60110 TAIR:At5g60110 InParanoid:Q9LVG3 OMA:EMISNSD
PhylomeDB:Q9LVG3 ProtClustDB:CLSN2916299 Genevestigator:Q9LVG3
Uniprot:Q9LVG3
Length = 327
Score = 153 (58.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 62/269 (23%), Positives = 119/269 (44%)
Query: 419 SFLEELKSSNAQKFELSDIAGRIVEFS-------VDQHGSRFIQQKLEHCSAEEKVSVF- 470
S+ +E+ SN+ K EL +A + S + GSR +Q+ L + V F
Sbjct: 56 SYFKEM-ISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL---GKSDDVDAFF 111
Query: 471 -KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 529
+L + TD + +YV + +K L E+++ L L+ +GC +
Sbjct: 112 CAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCIALNDI 171
Query: 530 L-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 588
+ + + + + QL+ + + +R D +GN V+Q + + I I GQ L
Sbjct: 172 ITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIEL 231
Query: 589 STHPYGCRVIQRVLEHCSDEQQGQCIVDEIL----ESAFALAQDQYGNYVTQHVLERGKS 644
S YG +++++LE E+ +V E+L + LA++++GN+V L R
Sbjct: 232 SFKKYGSYIVEKLLEV---EESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKAL-RFTK 287
Query: 645 YERTQILSKLAGKI---VQMSQHKYASNV 670
R + L K+ +++ + + SN+
Sbjct: 288 MSRMDLFWGLVQKLMPFIRLLRRSHGSNI 316
Score = 149 (57.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 37/130 (28%), Positives = 68/130 (52%)
Query: 588 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 647
L+ +GC + ++ D +++ + +A L+ D GN+V QHVL S
Sbjct: 158 LACDQHGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCI 217
Query: 648 TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQ 707
I L G+ +++S KY S +VEK LE ++ +++ E+LG + D L+ + +++
Sbjct: 218 HNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMV--VVVVELLGC--DGDRLMRLARNE 273
Query: 708 YANYVVQKIL 717
+ N+VV K L
Sbjct: 274 FGNFVVVKAL 283
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 153 (58.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 42/164 (25%), Positives = 83/164 (50%)
Query: 588 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 647
L+ +GC + ++ D +++ ++ +A L+ D GN+V QHVL S
Sbjct: 158 LACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCI 217
Query: 648 TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQ 707
I L G+ +++S KY S +VEK LE ++ +++ E+LG + D L+ + +++
Sbjct: 218 HNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMV--VVVVELLGC--DGDRLMRLARNE 273
Query: 708 YANYVVQKILEKCNEKLRET---LISRIRVHCDALKKYTYGKHI 748
+ N+VV K L E + L+ ++ L++ ++G +I
Sbjct: 274 FGNFVVVKALRFTKEMRMDLFWGLVQKLMPFIHLLRR-SHGNNI 316
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 60/269 (22%), Positives = 117/269 (43%)
Query: 419 SFLEELKSSNAQKFELSDIAGRIVEFS-------VDQHGSRFIQQKLEHCSAEEKVSVF- 470
S+ +E+ S + K EL +A + S + GSR +Q+ L + V F
Sbjct: 56 SYFKEM-ISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL---GKSDDVDAFF 111
Query: 471 -KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 529
+L + TD + +YV + +K L E+++ L L+ +GC +
Sbjct: 112 CAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCIALNDI 171
Query: 530 L-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 588
+ + + + + QL+ + + +R D +GN V+Q + + I I GQ L
Sbjct: 172 ITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIEL 231
Query: 589 STHPYGCRVIQRVLEHCSDEQQGQCIVDEIL----ESAFALAQDQYGNYVTQHVLERGKS 644
S YG +++++LE E+ +V E+L + LA++++GN+V L K
Sbjct: 232 SFKKYGSYIVEKLLEV---EESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKALRFTKE 288
Query: 645 YERTQILSKLAGKI---VQMSQHKYASNV 670
R + L K+ + + + + +N+
Sbjct: 289 M-RMDLFWGLVQKLMPFIHLLRRSHGNNI 316
>CGD|CAL0000283 [details] [associations]
symbol:orf19.4262 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0034629 "cellular protein complex localization" evidence=IEA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0051654
"establishment of mitochondrion localization" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000283 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000021
EMBL:AACQ01000022 eggNOG:COG5099 RefSeq:XP_720570.1
RefSeq:XP_720698.1 ProteinModelPortal:Q5AGB7 GeneID:3637600
GeneID:3637766 KEGG:cal:CaO19.11738 KEGG:cal:CaO19.4262
Uniprot:Q5AGB7
Length = 492
Score = 153 (58.9 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 63/243 (25%), Positives = 103/243 (42%)
Query: 473 VLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLP-LSLQMYGCRVIQKALE 531
+L +L D GN ++QK F K + K V L L + G IQK +
Sbjct: 13 MLDELPELSYDYLGNTIVQKLFTLVESSLVKLMMVKEVAPYLTQLGIHKNGTWAIQKIIN 72
Query: 532 VIEL-HQKSQLV-LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 589
+ +Q+ L+ L + ++ DQ GN+VIQ CI+ + +F+ A +S
Sbjct: 73 LCHSDYQQMYLIGASLKPYAVKLFNDQFGNYVIQGCIK-FGSPFNDFVFEAMLDNFLEIS 131
Query: 590 THPYGCRVIQRVLEHCSDEQQGQCIVDE--------ILESAFALAQDQYGNYVTQHVLER 641
+G R I+ +LE C D + +E I+E A LA + G+ + L+
Sbjct: 132 VGRFGARCIRTILESCHDSSSTSPVTNEQVLLVAGLIIEFANELAVNSNGSLLITWYLDT 191
Query: 642 GKSYE-RTQIL-SKLAGKIVQMSQHKYASNVVEKCLEYG-DTAERELLIEEILGQSEEND 698
K + + ++L SK I + HK A+ V K L D R ++ I E +
Sbjct: 192 FKDCDSKIELLMSKFLPNIRALCVHKLANLTVLKILNNRIDDKSRVATMDAIFNNKETLE 251
Query: 699 NLL 701
+L
Sbjct: 252 YIL 254
Score = 138 (53.6 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 49/213 (23%), Positives = 97/213 (45%)
Query: 424 LKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAE--EKVSVFKEVLPHASKLM 481
++SS + + ++A + + + ++G+ IQ+ + C ++ + + + P+A KL
Sbjct: 37 VESSLVKLMMVKEVAPYLTQLGIHKNGTWAIQKIINLCHSDYQQMYLIGASLKPYAVKLF 96
Query: 482 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKS-- 539
D FGNYVIQ + GSP + E ++ L +S+ +G R I+ LE H S
Sbjct: 97 NDQFGNYVIQGCIKFGSPFN-DFVFEAMLDNFLEISVGRFGARCIRTILE--SCHDSSST 153
Query: 540 -----QLVLELDGHVMRCVRD----QNGNHVIQKCIECVPA--EKIEFIISAFRGQVATL 588
+ VL + G ++ + NG+ +I ++ KIE ++S F + L
Sbjct: 154 SPVTNEQVLLVAGLIIEFANELAVNSNGSLLITWYLDTFKDCDSKIELLMSKFLPNIRAL 213
Query: 589 STHPYGCRVIQRVLEHCSDEQQGQCIVDEILES 621
H + ++L + D++ +D I +
Sbjct: 214 CVHKLANLTVLKILNNRIDDKSRVATMDAIFNN 246
>SGD|S000006246 [details] [associations]
symbol:PUF2 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0003729 "mRNA binding"
evidence=ISS;IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000006246
GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:Z71255
EMBL:BK006949 EMBL:Z49219 GO:GO:0000288 EMBL:Z68111 eggNOG:COG5099
EMBL:Z73616 GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136
OrthoDB:EOG4MWCFG PIR:S54067 RefSeq:NP_015367.1
ProteinModelPortal:Q12221 SMR:Q12221 IntAct:Q12221
MINT:MINT-4505998 STRING:Q12221 PaxDb:Q12221 EnsemblFungi:YPR042C
GeneID:856155 KEGG:sce:YPR042C CYGD:YPR042c NextBio:981289
Genevestigator:Q12221 GermOnline:YPR042C Uniprot:Q12221
Length = 1075
Score = 159 (61.0 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 77/296 (26%), Positives = 124/296 (41%)
Query: 452 RFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVG 511
+F L E+ V + LP +L +D GN VIQK FE+ S R + K
Sbjct: 559 QFDSNSLSTIEMEQLAIVMLDQLP---ELSSDYLGNTVIQKLFENSSNIIRDIMLRKCNK 615
Query: 512 QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIEC-V 569
+ + + G V QK +++ ++ LV + + DQ GN+VIQ ++
Sbjct: 616 YLTSMGVHKNGTWVCQKIIKMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQGILKFGF 675
Query: 570 PAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQC--IVDEILESAFALAQ 627
P FI + T+ + YG R ++ LE S Q Q I I+ + LA
Sbjct: 676 PWNS--FIFESVLSHFWTIVQNRYGSRAVRACLEADSIITQCQLLTITSLIIVLSPYLAT 733
Query: 628 DQYGNYVTQHVLERGKSYERTQIL-SKLAGK-IVQMSQHKYASNVVEKCLEYGDTAEREL 685
D G + +L+ + IL KL K +V++ HK S V K L E L
Sbjct: 734 DTNGTLLITWLLDTCTLPNKNLILCDKLVNKNLVKLCCHKLGSLTVLKILNLRGGEEEAL 793
Query: 686 ----LIEEILGQSEENDNLLVMMKDQ--YANYVVQKILEK--CNEKLRETLISRIR 733
+I I +D++L + D+ Y + K+L + +R+ I++IR
Sbjct: 794 SKNKIIHAIFDGPISSDSILFQILDEGNYGPTFIYKVLTSRILDNSVRDEAITKIR 849
Score = 43 (20.2 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 136 MDKNSYGHGKFSSFEAQPSMNSPGLTPPLY 165
MD +G S+ P + PG+T P+Y
Sbjct: 1 MDNKRLYNGNLSNI---PEVIDPGITIPIY 27
>DICTYBASE|DDB_G0288551 [details] [associations]
symbol:DDB_G0288551 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
dictyBase:DDB_G0288551 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 KO:K14844
EMBL:AAFI02000116 RefSeq:XP_636672.1 ProteinModelPortal:Q54IS5
STRING:Q54IS5 EnsemblProtists:DDB0238675 GeneID:8626685
KEGG:ddi:DDB_G0288551 OMA:LLRNDHI ProtClustDB:CLSZ2429870
Uniprot:Q54IS5
Length = 679
Score = 145 (56.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 54/287 (18%), Positives = 126/287 (43%)
Query: 421 LEELKSSNAQKFELSD-----IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLP 475
++E+K S+ ++ L + + G ++ V SR +Q L++ + ++ VFKE+
Sbjct: 120 IKEIKLSSEERATLIEQLTQKLKGNVLNVIVKHDASRVVQTLLKYGNEAQREIVFKELKD 179
Query: 476 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIE 534
+ +G ++I K ++G+ +QR + ++ G+ + + V++ E+
Sbjct: 180 QELTISKTQYGRFLILKLLKYGTEEQRNTIIKQFYGKFVSMISHKESSSVVEYIFSEIAS 239
Query: 535 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 594
QK+ ++ E G R + + + +E P +K E II+ Q+ + + G
Sbjct: 240 KLQKTHIIEEFYGPEYRLFKTEQPR-TLDSIVESSPQKK-EPIITYLSSQLTKILSSK-G 296
Query: 595 CRVIQ------RVLEHCSDEQQGQCI-VDEIL-ESAFALAQDQYGNYVTQHVLERGKSYE 646
R++Q ++E C+ + E L E + + G+ V +V+
Sbjct: 297 ERLVQFTIIQTLLIEFFKHASPDNCVDMSETLGELLLPMIHSKEGSQVAYYVISYATPKT 356
Query: 647 RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ 693
R I+ L I +++ +Y + + L+ D + +++I+ + +
Sbjct: 357 RKSIVKSLKDFIPKIASEEYGFLALVRLLDVTD--DTQMIIKSVFNE 401
Score = 38 (18.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 705 KDQYANYVVQKILEKCNEKLRETLISR 731
+ + N++ K++E C+ ++ L S+
Sbjct: 462 RKELLNWISPKLIELCSNHTQDLLSSQ 488
>SGD|S000002904 [details] [associations]
symbol:PUF6 "Pumilio-homology domain protein that binds the
3' UTR of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005934 "cellular bud tip" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0015934 "large ribosomal subunit"
evidence=IDA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IMP] [GO:0006810 "transport" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IDA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002904 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005934 GO:GO:0006810
EMBL:BK006938 EMBL:U33057 GO:GO:0003730 GO:GO:0042273 GO:GO:0000900
GO:GO:0015934 eggNOG:NOG273657 KO:K14844
GeneTree:ENSGT00390000015757 HOGENOM:HOG000246618 OMA:FAELVHT
OrthoDB:EOG41ZJKF PIR:S69554 RefSeq:NP_010784.1
ProteinModelPortal:Q04373 SMR:Q04373 DIP:DIP-6579N IntAct:Q04373
MINT:MINT-637951 STRING:Q04373 PaxDb:Q04373 PeptideAtlas:Q04373
EnsemblFungi:YDR496C GeneID:852107 KEGG:sce:YDR496C CYGD:YDR496c
NextBio:970463 Genevestigator:Q04373 GermOnline:YDR496C
Uniprot:Q04373
Length = 656
Score = 135 (52.6 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 56/253 (22%), Positives = 110/253 (43%)
Query: 425 KSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDV 484
K SN + +ELS I + + SR +Q +++ S + + + + L T
Sbjct: 148 KLSN-EIWELSKDC--ISDLVLKHDASRIVQTLVKYSSKDRREQIVDALKGKFYVLATSA 204
Query: 485 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELH-QKSQLVL 543
+G Y++ K +GS R+ + +L G + L G V++ + H Q+ Q++
Sbjct: 205 YGKYLLVKLLHYGSRSSRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIK 264
Query: 544 ELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQV-ATLSTHPYGCRVIQRVL 602
E G R+ + + I+K E EK I G + A++ G +++ +
Sbjct: 265 EFWGSEYAVFRETHKDLTIEKVCES-SIEKRNIIARNLIGTITASVEKGSTGFQILHAAM 323
Query: 603 EH---CSDEQQGQCIVDEILESAFA-LAQDQYGNYVTQHVLERGKSYERTQILSKLAGKI 658
++E++ ++ E+L FA L G+ V ++ R + ER IL L
Sbjct: 324 REYVKIANEKEISEMI-ELLHEQFAELVHTPEGSDVACTLVARANAKERKLILKALKNHA 382
Query: 659 VQMSQHKYASNVV 671
++ +++Y N+V
Sbjct: 383 EKLIKNEYG-NIV 394
Score = 122 (48.0 bits), Expect = 0.00070, P = 0.00070
Identities = 55/260 (21%), Positives = 112/260 (43%)
Query: 498 SPDQRKELAEKLVGQVLPLS--------LQMYGCRVIQKALEVIELHQKSQLVLELDGHV 549
+P K++ EKL ++ LS L+ R++Q ++ ++ Q+V L G
Sbjct: 138 TPPLPKQIREKLSNEIWELSKDCISDLVLKHDASRIVQTLVKYSSKDRREQIVDALKGKF 197
Query: 550 MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQ 609
G +++ K + + II+ G + L H G V++ + + +
Sbjct: 198 YVLATSAYGKYLLVKLLHYGSRSSRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHE 257
Query: 610 QGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK-LAGKIV-QMSQHKYA 667
Q Q ++ E S +A+ ++ + + + V E S E+ I+++ L G I + +
Sbjct: 258 QRQQMIKEFWGSEYAVFRETHKDLTIEKVCE--SSIEKRNIIARNLIGTITASVEKGSTG 315
Query: 668 SNVVEKCL-EYGDTA-ERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLR 725
++ + EY A E+E I E++ E LV + + V ++ + N K R
Sbjct: 316 FQILHAAMREYVKIANEKE--ISEMIELLHEQFAELVHTPE--GSDVACTLVARANAKER 371
Query: 726 ETLISRIRVHCDALKKYTYG 745
+ ++ ++ H + L K YG
Sbjct: 372 KLILKALKNHAEKLIKNEYG 391
>RGD|1564753 [details] [associations]
symbol:LOC499339 "hypothetical protein LOC499339" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1564753 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 GeneTree:ENSGT00390000015757 HOGENOM:HOG000237322
EMBL:BC092579 EMBL:BC098744 IPI:IPI00563669 RefSeq:NP_001020207.1
UniGene:Rn.127943 UniGene:Rn.52964 ProteinModelPortal:Q562C7
STRING:Q562C7 PhosphoSite:Q562C7 PRIDE:Q562C7
Ensembl:ENSRNOT00000033724 GeneID:499339 KEGG:rno:499339
InParanoid:Q562C7 NextBio:702600 Genevestigator:Q562C7
GermOnline:ENSRNOG00000012574 Uniprot:Q562C7
Length = 647
Score = 134 (52.2 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 75/356 (21%), Positives = 158/356 (44%)
Query: 412 FEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFK 471
++D KK +ELK Q +LSD V +H +++K C E++V +
Sbjct: 109 WDDFKKKK--KELK----QNRQLSDKTNYDVVVRA-KHIWESLRRK--DCDKEKRVKLMS 159
Query: 472 EVLPHAS-KLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQ 527
++ K+ T F + VIQ ++GS +QRK E+L G ++ LS Y +++
Sbjct: 160 DLQKLIQGKIKTIAFAHDSTRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIVK 219
Query: 528 KALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI-ECVPAEKIEFIISAFRGQVA 586
K L Q ++++ GHV + +R + +++ + E+ + G
Sbjct: 220 KFLMYGSKPQIAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTF 279
Query: 587 TL---STHPYGCRVIQRVLEHCSDEQQG--QCIVDEILESAFALAQDQ--YGNYVTQHVL 639
L + HP +++VLE Q G + I+DE+ + +AQ + + + V
Sbjct: 280 QLYKSADHP----TLEKVLE----VQPGKLELILDEMKQILTPMAQKEAVIKHSLVHKVF 331
Query: 640 ERGKSYE----RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE 695
+Y R++++ + +V ++ + V CL +G +R+++++ + E
Sbjct: 332 LDFFTYAPPKLRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVE 391
Query: 696 ENDNLLVMMKDQYANYVVQKILEKCNE-KL-RETLISRIRVHCDALKKYTYGKHIV 749
+ N QY++ V+ + ++ KL ++ +IS + ++ YG+ ++
Sbjct: 392 KIAN------GQYSHLVLLAAFDCIDDTKLVKQIIISEVISSLPSIVNDKYGRKVL 441
>CGD|CAL0005913 [details] [associations]
symbol:orf19.3547 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IEA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0005913 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000094
EMBL:AACQ01000093 eggNOG:NOG273657 KO:K14844 HOGENOM:HOG000246618
RefSeq:XP_714906.1 RefSeq:XP_714969.1 ProteinModelPortal:Q59ZH2
STRING:Q59ZH2 GeneID:3643365 GeneID:3643461 KEGG:cal:CaO19.11031
KEGG:cal:CaO19.3547 Uniprot:Q59ZH2
Length = 667
Score = 133 (51.9 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 64/305 (20%), Positives = 135/305 (44%)
Query: 433 ELSDIAGRIVEFSVDQH-GSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQ 491
E+ +++ ++ V +H SR +Q +++ S E + + + +L T +G Y++
Sbjct: 157 EVWELSHDVINDLVMKHDASRVVQTLVKYSSKERRDIIVNSLKGSFYQLATSAYGKYLLI 216
Query: 492 KFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL-HQKSQLVLELDGHVM 550
K +GS + R + ++L G++ L G V++ + Q+ Q++ E G
Sbjct: 217 KLLHYGSKESRAIIVDELHGKLRKLMRHKEGAYVVEDLYVLYSTSEQRQQMIREFWGSQY 276
Query: 551 RCVRDQN-GNHVIQKCIECVPAEKIEFIISAFRGQV-ATLSTHPYGCRVIQRVLEH---- 604
RD G V+ E AEK + I+S G + A++ G +++ ++
Sbjct: 277 AVFRDSGKGKTVLDITRES--AEKKQLIMSNLYGTIKASVEKGSTGFQILHAAMKEYVTV 334
Query: 605 CSDE--QQGQCIVD--EILESAFA-LAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 659
D+ I D ++L FA L Q G+ V +++ + ER I+ L
Sbjct: 335 LKDDIDANDSAIRDFIDLLGEQFAELVHTQEGSDVACNLIALANAKERKVIIRGLKTHTN 394
Query: 660 QMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLV-MMKDQYANYVVQKILE 718
++ +++Y N+V L T + +LI + G L+ +++D+++ + +L+
Sbjct: 395 ELIKNEYG-NIVLITLFM--TVDDTVLISKSFGAEIFTSELVPQLIQDKFSRRPILYLLK 451
Query: 719 KCNEK 723
+ K
Sbjct: 452 GLDGK 456
>TAIR|locus:2086760 [details] [associations]
symbol:PUM24 "pumilio 24" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006406 "mRNA export from nucleus" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB028608 eggNOG:NOG273657 KO:K14844 EMBL:AY045638
IPI:IPI00521400 RefSeq:NP_566559.1 UniGene:At.5720
ProteinModelPortal:Q9LRZ3 SMR:Q9LRZ3 STRING:Q9LRZ3 PaxDb:Q9LRZ3
PRIDE:Q9LRZ3 EnsemblPlants:AT3G16810.1 GeneID:820934
KEGG:ath:AT3G16810 TAIR:At3g16810 HOGENOM:HOG000070534
InParanoid:Q9LRZ3 OMA:IKHGSAK PhylomeDB:Q9LRZ3
ProtClustDB:CLSN2688458 Genevestigator:Q9LRZ3 Uniprot:Q9LRZ3
Length = 641
Score = 132 (51.5 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 61/279 (21%), Positives = 120/279 (43%)
Query: 439 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGS 498
G++ E +V SR +Q ++ CS EK +F E+ P L ++ + + IQK + S
Sbjct: 121 GKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFIQKMLDGAS 180
Query: 499 PDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL---DGHVMRCVRD 555
Q L G V PL ++G V++ A + QK +L+ EL + + + +
Sbjct: 181 KQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAELYSTELQLFKGLTT 240
Query: 556 QNGNHVIQKCIECVPAEK------IEFIISAF--RGQVATLSTHPYGCRVIQRVLEHCSD 607
N V+ I + +K + II +G V TH + + + S
Sbjct: 241 SNEKTVVD-IIAKLGLQKGAVNRHMTAIIQPILEKGIVDHTITHKLLIEYLT-IADKTSA 298
Query: 608 EQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYA 667
Q + +L + + G+ + ++ G + ER +I+ + + +M+ ++
Sbjct: 299 ADVLQLLTGSLL---LRMVHTRDGSRLAMLSIKHGSAKERKKIIKAMKEHVKKMAFDQFG 355
Query: 668 SNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKD 706
S V+ C+ + + +L+ + I+ + E LVM K+
Sbjct: 356 SMVLA-CI-FSIVDDTKLVTKIIVRELEATLKDLVMDKN 392
Score = 125 (49.1 bits), Expect = 0.00032, P = 0.00032
Identities = 59/251 (23%), Positives = 108/251 (43%)
Query: 447 DQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFEHGSPDQRKEL 505
D+ S + +K A+E K+ PH + L ++ + + G D+ K +
Sbjct: 54 DKEQSTNLSKKERRVQAKELTEARKKKRKPHYN-LEQELVSLWEKMRRRNIGKEDRSKLI 112
Query: 506 AE---KLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVI 562
+E K+ G+V +++ RV+Q ++ +K L EL + ++ H I
Sbjct: 113 SEAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFI 172
Query: 563 QKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESA 622
QK ++ +++ IS+ RG VA L H +G V++ H Q Q E+L
Sbjct: 173 QKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAY-HLGSAAQKQ----ELLAEL 227
Query: 623 FALAQDQYGNYVTQHVLERGKSYERT--QILSKLAGKIVQMSQHKYASNVVEKCLEYG-- 678
++ + T S E+T I++KL + +++H A +++ LE G
Sbjct: 228 YSTELQLFKGLTT--------SNEKTVVDIIAKLGLQKGAVNRHMTA--IIQPILEKGIV 277
Query: 679 -DTAERELLIE 688
T +LLIE
Sbjct: 278 DHTITHKLLIE 288
>MGI|MGI:106253 [details] [associations]
symbol:D19Bwg1357e "DNA segment, Chr 19, Brigham & Women's
Genetics 1357 expressed" species:10090 "Mus musculus" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:106253 GO:GO:0005783
SUPFAM:SSF48371 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844
OMA:RKDCDKE OrthoDB:EOG4X3H13 EMBL:AK050829 EMBL:AK088081
EMBL:AK141893 EMBL:AK172872 IPI:IPI00222675 RefSeq:NP_803425.1
UniGene:Mm.261027 ProteinModelPortal:Q8BKS9 STRING:Q8BKS9
PhosphoSite:Q8BKS9 PaxDb:Q8BKS9 PRIDE:Q8BKS9
Ensembl:ENSMUST00000076219 GeneID:52874 KEGG:mmu:52874
UCSC:uc008hby.1 CTD:52874 GeneTree:ENSGT00390000015757
HOGENOM:HOG000237322 InParanoid:Q8BKS9 NextBio:309667 Bgee:Q8BKS9
Genevestigator:Q8BKS9 GermOnline:ENSMUSG00000041360 Uniprot:Q8BKS9
Length = 647
Score = 140 (54.3 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 72/354 (20%), Positives = 158/354 (44%)
Query: 412 FEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFK 471
++D KK +ELK S +LSD + +H +++K C E++V +
Sbjct: 109 WDDFKKKK--KELKQSR----QLSDKTNYDIVVRA-KHIWESLRRK--DCDKEKRVKLMS 159
Query: 472 EVLPHAS-KLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQ 527
++ K+ T F + VIQ F ++G+ +QRK+ ++L G ++ LS Y +++
Sbjct: 160 DLQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVK 219
Query: 528 KALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI-ECVPAEKIEFIISAFRGQVA 586
K L Q ++++ GHV + +R + +++ + E+ + G
Sbjct: 220 KFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTF 279
Query: 587 TL---STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQ--YGNYVTQHVLER 641
L + HP + +VLE + + I+DE+ + +AQ + + + V
Sbjct: 280 QLYKSADHP----TLDKVLE--LQPAKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLD 333
Query: 642 GKSYE----RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEEN 697
+Y R++++ + +V ++ + V CL +G +R+++++ + E+
Sbjct: 334 FFTYAPPKPRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKV 393
Query: 698 DNLLVMMKDQYANYVVQKILEKCNE-KL-RETLISRIRVHCDALKKYTYGKHIV 749
N QY++ V+ + ++ KL ++ +IS I ++ YG+ ++
Sbjct: 394 AN------GQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVL 441
Score = 38 (18.4 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 401 QGQRTFEGQRTFEDSKKHSFLEELKSSNAQKF 432
+G++ F G+ K+ F + +SS+++ F
Sbjct: 4 KGKKKFTGKSPQTSQGKNKFHKNSESSSSKTF 35
>UNIPROTKB|G4MRT4 [details] [associations]
symbol:MGG_13803 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50303 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:CM001231 KO:K14844
RefSeq:XP_003710911.1 ProteinModelPortal:G4MRT4
EnsemblFungi:MGG_13803T0 GeneID:5049020 KEGG:mgr:MGG_13803
Uniprot:G4MRT4
Length = 724
Score = 127 (49.8 bits), Expect = 0.00023, P = 0.00023
Identities = 61/293 (20%), Positives = 124/293 (42%)
Query: 423 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLM- 481
+LKS + K + + ++ + + G + H ++ K P A +L
Sbjct: 77 DLKSEDDHKHKKAKLSSGTSDGKTFERGQT---SRESHALQKQLAQERKAAKPLADELAR 133
Query: 482 TDVFGNYVIQKFFEHGSPDQRKELAEKL----VGQVLPLSLQMYGCRVIQKALEVIELHQ 537
T + +K H ++R+ L ++L G+V L+ R +Q A++ + Q
Sbjct: 134 TKKLWERLRRK--SHVPKEERQGLVDELFTIVTGRVRDFVLKHDAVRAVQTAIKYATMAQ 191
Query: 538 KSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRV 597
+ ++ EL G + + +I K + E + I+ F G+V L HP +
Sbjct: 192 RREIAQELKGTFAQLAESRYAKFLIGKLLGHQDDEVRDLIVPEFYGKVKKLINHPEASWI 251
Query: 598 IQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHV--LERGKSYERTQILSKLA 655
+ + + ++Q ++ E + FAL + + G VT + + + + +R IL L
Sbjct: 252 LDDIYRGVATKEQKDILLREWYGTEFALFKPENGEAVTADLPKILKNEPSKRGPILKYLF 311
Query: 656 GKIVQMSQHKYASNVV--EKCLEY-----GDTAERELLIEEILGQSEENDNLL 701
G I + Q + + + L+Y DT E + +E I ++++N +LL
Sbjct: 312 GMINNLIQKQMTGFTMLHDAMLQYFLCLPPDTEEHKEFVEII--KADDNGDLL 362
>UNIPROTKB|Q15397 [details] [associations]
symbol:KIAA0020 "Pumilio domain-containing protein
KIAA0020" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:CH471071 EMBL:AK292169 EMBL:AL354723 EMBL:AL589675
EMBL:BC016137 EMBL:D13645 EMBL:AF490254 EMBL:CR456957 EMBL:AY047588
EMBL:AY047589 EMBL:AY047590 IPI:IPI00791325 RefSeq:NP_055693.4
UniGene:Hs.493309 ProteinModelPortal:Q15397 IntAct:Q15397
MINT:MINT-1404790 STRING:Q15397 PhosphoSite:Q15397 DMDM:81175177
SWISS-2DPAGE:Q15397 PaxDb:Q15397 PRIDE:Q15397 DNASU:9933
Ensembl:ENST00000397885 GeneID:9933 KEGG:hsa:9933 UCSC:uc003zhp.1
CTD:9933 GeneCards:GC09M002720 HGNC:HGNC:29676 HPA:HPA002353
MIM:609960 neXtProt:NX_Q15397 PharmGKB:PA134895115 eggNOG:NOG273657
HOVERGEN:HBG052166 InParanoid:Q15397 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 ChiTaRS:KIAA0020 GenomeRNAi:9933 NextBio:37470
Bgee:Q15397 CleanEx:HS_KIAA0020 Genevestigator:Q15397
GermOnline:ENSG00000080608 Uniprot:Q15397
Length = 648
Score = 132 (51.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 70/351 (19%), Positives = 155/351 (44%)
Query: 412 FEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFK 471
++D KK +ELK S +LSD + Q +++K C E++V +
Sbjct: 110 WDDFKKKK--KELKQSR----QLSDKTNYDIVVRAKQMWE-ILRRK--DCDKEKRVKLMS 160
Query: 472 EVLPHAS-KLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQ 527
++ K+ T F + VIQ + ++G+ +QRK+ E+L ++ LS Y +++
Sbjct: 161 DLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVK 220
Query: 528 KALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI-ECVPAEKIEFIISAFRGQVA 586
K L Q ++++ GHV + +R + +++ + E+ + G
Sbjct: 221 KFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTF 280
Query: 587 TLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQ--YGNYVTQHVLERGKS 644
L R + +VLE ++ + I+DE+ + +AQ + + + V +
Sbjct: 281 QLYKSA-DHRTLDKVLE--VQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFT 337
Query: 645 YE----RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNL 700
Y R++++ + +V ++ + V CL +G +R+++++ + E+ N
Sbjct: 338 YAPPKLRSEMIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVAN- 396
Query: 701 LVMMKDQYANYVVQKILEKCNE-KL-RETLISRIRVHCDALKKYTYGKHIV 749
QY++ V+ + ++ KL ++ +IS I ++ YG+ ++
Sbjct: 397 -----GQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVL 442
Score = 41 (19.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 401 QGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIA 438
+G++ F G+ T +K+ F + S +++ F +A
Sbjct: 4 KGKKQFTGKSTKTAQEKNRFHKNSDSGSSKTFPTRKVA 41
>UNIPROTKB|E1C1R5 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 OMA:RKDCDKE
GeneTree:ENSGT00390000015757 EMBL:AADN02068459 EMBL:AADN02068460
EMBL:AADN02068461 IPI:IPI00574038 Ensembl:ENSGALT00000016546
ArrayExpress:E1C1R5 Uniprot:E1C1R5
Length = 638
Score = 126 (49.4 bits), Expect = 0.00025, P = 0.00025
Identities = 65/352 (18%), Positives = 155/352 (44%)
Query: 414 DSKKHSF--LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFK 471
DSKK + ++ K Q +L+D + + Q ++K C E++ +
Sbjct: 96 DSKKPKWDDFKKKKKELKQSRQLNDRSNYDIIVKSKQIWESVRRKK---CDKEKREKLMN 152
Query: 472 EV--LPHASKLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVI 526
E+ L H K+ F + VIQ F ++G+ QR+E E+L ++ LS Y ++
Sbjct: 153 ELQKLLHG-KIKNLAFAHDSTRVIQCFIQYGNDKQRQETFEELKDSLVELSKSKYSRNIV 211
Query: 527 QKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI-ECVPAEKIEFIISAFRGQV 585
+K L Q ++++ GHV + +R + V++ + E+ + G
Sbjct: 212 KKFLMYGTKQQIAEIIKSFKGHVKKMLRHAEASAVVEYAYNDKAILEQRNMLTEELYGNT 271
Query: 586 ATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQY---GNYVTQHVLE-- 640
+ P + +VLE + ++ + I+DE+ + +AQ + + V + L+
Sbjct: 272 FQVYKTPI-VPTLDKVLE--AQPEKREAILDEMKQILTPMAQKEAVIKHSLVHKVFLDFF 328
Query: 641 -RGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDN 699
+R++++ + ++ ++ + V CL +G +R+++++ + E+
Sbjct: 329 THALPKQRSEMIEAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYIEK--- 385
Query: 700 LLVMMKDQYANYVVQKILEKCNE-KL-RETLISRIRVHCDALKKYTYGKHIV 749
+ ++++ V+ + ++ KL ++ +I+ + +L +GK ++
Sbjct: 386 ---IATGEFSHLVLLAAFDCIDDTKLVKQLIITELNASLPSLISNKHGKKVL 434
>UNIPROTKB|F1SJG9 [details] [associations]
symbol:LOC100152831 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
OMA:RKDCDKE GeneTree:ENSGT00390000015757 EMBL:CU062572
Ensembl:ENSSSCT00000005761 Uniprot:F1SJG9
Length = 647
Score = 135 (52.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 70/351 (19%), Positives = 157/351 (44%)
Query: 412 FEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFK 471
+++ KK +ELK S +LSD A + Q +++K C+ E++V +
Sbjct: 109 WDEFKKKK--KELKQSR----QLSDKANYDIVVRAKQIWE-ILRRK--DCNKEKRVKLMS 159
Query: 472 EVLPHAS-KLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQ 527
++ K+ T F + VIQ + ++G+ +QRK+ E+L G ++ LS Y +++
Sbjct: 160 DLQKLIQGKIKTIAFAHDSTRVIQCYIQYGTEEQRKQAFEELRGDLVELSKAKYSRNIVK 219
Query: 528 KALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI-ECVPAEKIEFIISAFRGQVA 586
K L Q ++++ GHV + +R + +++ + E+ + G
Sbjct: 220 KFLMYGNKAQIAEIMRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTF 279
Query: 587 TLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQY---GNYVTQHVLE--- 640
L C + +VLE ++ + I+DE+ + +AQ + + V + L+
Sbjct: 280 QLYKSA-DCPTLDKVLE--VQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFT 336
Query: 641 RGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNL 700
R++++ + ++ ++ + V CL +G +R+++++ + E+ N
Sbjct: 337 HAPPKLRSEMIEAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVAN- 395
Query: 701 LVMMKDQYANYVVQKILEKCNE-KL-RETLISRIRVHCDALKKYTYGKHIV 749
QY++ V+ + ++ KL ++ +IS I + YG+ ++
Sbjct: 396 -----GQYSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGRKVL 441
Score = 37 (18.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 401 QGQRTFEGQRTFEDSKKHSFLEELKSSNAQKF 432
+G++ F G+ T +K+ F + S +++ F
Sbjct: 4 KGKKKFTGKGTKTSQEKNRFHKNNGSGSSKTF 35
>TAIR|locus:2035312 [details] [associations]
symbol:PUM22 "pumilio 22" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AC023628 IPI:IPI00518100
PIR:F86144 RefSeq:NP_171648.1 UniGene:At.51446
ProteinModelPortal:Q9LNI2 EnsemblPlants:AT1G01410.1 GeneID:837547
KEGG:ath:AT1G01410 TAIR:At1g01410 eggNOG:NOG237520
HOGENOM:HOG000153055 InParanoid:Q9LNI2 OMA:MTHERGY PhylomeDB:Q9LNI2
ProtClustDB:CLSN2912781 Genevestigator:Q9LNI2 Uniprot:Q9LNI2
Length = 361
Score = 119 (46.9 bits), Expect = 0.00059, P = 0.00059
Identities = 59/232 (25%), Positives = 113/232 (48%)
Query: 531 EVIELHQ-KSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISA-FRGQVATL 588
+V +LH+ S+L+L+ D V + G+ +IQ I +E+++ +I A + + +
Sbjct: 119 DVDKLHKLASKLMLDSD-LFFEFVITRRGSLMIQ--IILGKSEEVDQVILAGVKQRFIDV 175
Query: 589 STHPYGCRVIQRVLEHCSDEQQGQC-IVDEILE----SAFALAQD-QYGNYVTQHVLERG 642
+T+ YG R++ + ++ +++G + D+IL A L +D GN QH +
Sbjct: 176 TTNFYGYRIMIQTIKVF--KKRGDLKVYDQILRLIGVHALYLTKDPDMGNKTFQHAINLH 233
Query: 643 KSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYG-DTAERELLIEEILGQSEENDNLL 701
T I L +++S K+ S +VE ++ LL+ EI+ E D L+
Sbjct: 234 HQDCTTFIACGLQSHYIELSFLKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDE--DTLV 291
Query: 702 VMMKDQYANYVVQKILEKCNEKLRE---TLISRIRVHCDALKKYTYGKHIVA 750
+ D+Y N +++K L E + L+ ++ D+L+ T G++IVA
Sbjct: 292 RLATDEYGNNILKKFLALAKEHKEDFFGDLVDKLNPLLDSLRG-TLGENIVA 342
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 760 711 0.00084 121 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 98
No. of states in DFA: 610 (65 KB)
Total size of DFA: 352 KB (2174 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 67.91u 0.20s 68.11t Elapsed: 00:00:04
Total cpu time: 67.94u 0.20s 68.14t Elapsed: 00:00:04
Start: Tue May 21 06:06:17 2013 End: Tue May 21 06:06:21 2013