Query 004342
Match_columns 760
No_of_seqs 297 out of 1662
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 22:09:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 3.1E-66 1.1E-70 564.1 27.1 342 416-758 3-345 (351)
2 3k49_A MRNA-binding protein PU 100.0 6.6E-65 2.2E-69 557.2 23.8 341 416-757 3-362 (369)
3 3k62_A FEM-3 mRNA-binding fact 100.0 9.2E-62 3.1E-66 540.3 26.4 344 395-758 3-405 (412)
4 3v71_A PUF (pumilio/FBF) domai 100.0 1.9E-59 6.4E-64 517.2 24.4 325 431-755 10-381 (382)
5 3bwt_A Protein PUF4; pumilio, 100.0 2.6E-59 8.9E-64 505.0 19.0 318 432-753 6-332 (333)
6 3gvo_A Pumilio 2, pumilio homo 100.0 2.6E-44 8.8E-49 391.5 19.2 265 412-677 68-342 (351)
7 3k49_A MRNA-binding protein PU 100.0 2.6E-41 8.9E-46 370.2 16.7 302 449-757 3-325 (369)
8 3bwt_A Protein PUF4; pumilio, 100.0 1.9E-39 6.6E-44 349.9 24.2 282 468-758 6-297 (333)
9 3v71_A PUF (pumilio/FBF) domai 100.0 1.4E-37 4.7E-42 343.0 20.9 283 470-758 13-329 (382)
10 3k62_A FEM-3 mRNA-binding fact 100.0 2E-36 6.7E-41 336.8 26.9 283 470-758 23-349 (412)
11 3hjl_A Flagellar motor switch 90.2 21 0.00073 38.2 20.2 182 457-657 30-225 (329)
12 2of3_A ZYG-9; multifunctional 81.8 40 0.0014 35.0 16.3 126 594-734 130-263 (266)
13 1wdy_A 2-5A-dependent ribonucl 71.8 52 0.0018 31.9 13.4 222 482-723 35-267 (285)
14 2ilr_A Protein FACE, fanconi a 62.3 97 0.0033 32.1 13.3 72 453-530 40-115 (264)
15 4fhr_B Flagellar motor switch 60.3 76 0.0026 31.8 12.0 120 486-606 44-170 (216)
16 3u0r_A Apoptosis inhibitor 5; 57.1 1.5E+02 0.0052 33.4 14.6 109 642-754 146-267 (507)
17 3pkr_A FLIG, flagellar motor s 55.5 1.2E+02 0.0042 31.5 12.9 152 454-606 66-227 (279)
18 2pnn_A Transient receptor pote 50.8 1.5E+02 0.005 29.0 12.4 156 447-605 10-195 (273)
19 3hjl_A Flagellar motor switch 50.4 2.6E+02 0.0088 29.8 20.3 35 706-740 196-230 (329)
20 3u0r_A Apoptosis inhibitor 5; 47.1 90 0.0031 35.2 10.7 159 441-603 89-267 (507)
21 3tpo_A Importin subunit alpha- 44.9 3.5E+02 0.012 29.7 18.2 15 455-469 168-182 (529)
22 2yvy_A MGTE, Mg2+ transporter 44.1 47 0.0016 33.7 7.6 18 528-545 86-103 (278)
23 3ul1_B Importin subunit alpha- 43.8 3E+02 0.01 30.2 14.7 26 460-485 130-156 (510)
24 1k1a_A B-cell lymphoma 3-encod 39.7 2.4E+02 0.0083 26.4 12.4 131 446-579 5-137 (241)
25 3jxi_A Vanilloid receptor-rela 39.0 2.7E+02 0.0091 26.7 12.5 188 453-643 8-237 (260)
26 3tpo_A Importin subunit alpha- 37.2 4.5E+02 0.015 28.8 19.5 27 460-486 149-176 (529)
27 1b3u_A Protein (protein phosph 37.0 4.3E+02 0.015 28.5 15.9 10 723-732 534-543 (588)
28 2etb_A Transient receptor pote 36.5 2.9E+02 0.01 26.4 12.2 187 456-645 8-235 (256)
29 3pkr_A FLIG, flagellar motor s 36.4 1.6E+02 0.0055 30.6 10.2 52 568-620 114-168 (279)
30 1xi4_A Clathrin heavy chain; a 36.1 2E+02 0.007 36.9 12.5 54 413-466 525-578 (1630)
31 1wdy_A 2-5A-dependent ribonucl 35.5 1.3E+02 0.0044 29.0 9.0 190 486-692 5-207 (285)
32 1b3u_A Protein (protein phosph 34.8 4.6E+02 0.016 28.2 14.5 12 417-428 12-23 (588)
33 3eu9_A Huntingtin-interacting 34.6 2.8E+02 0.0097 25.7 11.2 123 449-579 8-130 (240)
34 1k1a_A B-cell lymphoma 3-encod 30.6 3E+02 0.01 25.7 10.6 188 481-680 4-196 (241)
35 3ldz_A STAM-1, signal transduc 30.1 2.1E+02 0.0073 26.3 9.0 43 717-759 94-136 (140)
36 3s4w_B Protein FACD2, fanconi 26.6 1E+03 0.036 30.0 16.6 64 595-659 209-272 (1323)
37 2qk1_A Protein STU2; STU2P, XM 26.2 4.9E+02 0.017 25.7 16.8 128 592-732 100-246 (249)
38 2etb_A Transient receptor pote 26.0 2.4E+02 0.0083 27.0 9.1 190 485-681 1-235 (256)
39 3utm_A Tankyrase-1; tankyrase, 26.0 4.8E+02 0.017 25.7 14.5 123 449-579 23-145 (351)
40 2f8y_A Notch homolog 1, transl 25.7 4E+02 0.014 24.6 13.1 125 447-579 22-146 (223)
41 2rfa_A Transient receptor pote 25.3 4.2E+02 0.014 24.7 12.3 62 481-542 32-95 (232)
42 3jxi_A Vanilloid receptor-rela 25.0 2.1E+02 0.0072 27.5 8.5 196 483-687 2-245 (260)
43 2ilr_A Protein FACE, fanconi a 24.6 4.8E+02 0.017 26.9 11.1 166 489-663 39-213 (264)
44 3hra_A Ankyrin repeat family p 24.4 4E+02 0.014 24.1 11.8 118 481-605 34-151 (201)
45 2pnn_A Transient receptor pote 23.8 3E+02 0.01 26.6 9.5 193 482-681 9-247 (273)
46 4fhr_B Flagellar motor switch 22.9 5.6E+02 0.019 25.3 14.0 117 631-760 86-211 (216)
47 2dzn_A Probable 26S proteasome 22.5 4.6E+02 0.016 24.2 11.3 97 482-579 32-128 (228)
48 2dzn_A Probable 26S proteasome 21.7 2.6E+02 0.0088 26.0 8.1 86 486-573 2-87 (228)
49 2zy9_A Mg2+ transporter MGTE; 21.5 1.4E+02 0.0047 33.1 7.0 41 457-509 59-99 (473)
50 3b7b_A Euchromatic histone-lys 21.5 2.3E+02 0.0078 26.6 7.8 229 481-734 6-235 (237)
51 1x5b_A Signal transducing adap 21.4 4.1E+02 0.014 25.0 9.3 73 669-759 74-147 (163)
52 2bpt_A Importin beta-1 subunit 20.5 9.7E+02 0.033 27.2 22.3 34 724-757 750-788 (861)
53 2xes_A Protein PAT1 homolog 1; 20.2 2.6E+02 0.0088 28.6 8.1 50 669-719 127-176 (248)
54 3opb_A SWI5-dependent HO expre 20.2 1.1E+03 0.039 27.9 17.4 50 437-487 76-126 (778)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=3.1e-66 Score=564.13 Aligned_cols=342 Identities=56% Similarity=0.950 Sum_probs=329.8
Q ss_pred hhhHHHHHhhccccccchHHhHHHHHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCcccchhhhhhhc
Q 004342 416 KKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 495 (760)
Q Consensus 416 ~rs~LLeeL~s~~~~~~~L~eI~GkvveLa~dq~gSRvIQ~lLe~~s~Eqr~~If~EL~p~~~eL~~D~yGnhVIQKLLe 495 (760)
-|+.|+|+|+.++.+.++|+++.|+++++|+||+|||+||++|+++++++++.||+|+.+++.+||+|+||||||||||+
T Consensus 3 ~~~~l~e~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle 82 (351)
T 3gvo_A 3 GRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFE 82 (351)
T ss_dssp CCCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHH
T ss_pred CccHHHHHHhCCCCCCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhccccccccccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCChhhhHhhhcCChhHHH
Q 004342 496 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIE 575 (760)
Q Consensus 496 ~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNhVLQklLe~~~~e~~~ 575 (760)
+++++++..|++.+.|++.+|+.|+|||||||++|+.++.+++..|++||.+++..|++|++||||+|+|+++++++.+.
T Consensus 83 ~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~ 162 (351)
T 3gvo_A 83 FGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ 162 (351)
T ss_dssp HCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTH
T ss_pred hCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHhhhccCCcchhHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhcCChhhHHHHHHHHH
Q 004342 576 FIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLA 655 (760)
Q Consensus 576 ~Ii~~L~~~i~~Ls~hkyGS~VLQklLe~~~~~~q~~~Il~eL~~~l~~La~Dq~GNyVVQ~LLe~~~~k~R~~Iie~L~ 655 (760)
+|++.+.+++.+|++|+|||+|||++|+.+. ++++..|++++.+++..|++|+|||||||++|++++++.++.|++.++
T Consensus 163 ~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~-~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~ 241 (351)
T 3gvo_A 163 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCT-AEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 241 (351)
T ss_dssp HHHHHTTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHCC-HHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 9999999999999999999999999999986 567888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccHHHHHHHHHHhCCHHHHHHHHHHHhcCCC-CcHHHHHhhcCCChhHHHHHHHhhCCHHHHHHHHHHHHH
Q 004342 656 GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRV 734 (760)
Q Consensus 656 ~~l~~Ls~~K~GS~VVEk~L~~a~~keRk~II~eLl~~~~-~ke~L~~La~DqyGnyVIQklL~~~dd~~rk~Il~~Lk~ 734 (760)
+++..|+++||||+|||+||+++++++|+.|+++|+...+ ..+.+..|+.|+|||||||++|+.+++++|+.|++.|++
T Consensus 242 ~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~ 321 (351)
T 3gvo_A 242 GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP 321 (351)
T ss_dssp TCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999996432 124799999999999999999999999999999999999
Q ss_pred hHHHHhhCCChHHHHHHHHHHHhc
Q 004342 735 HCDALKKYTYGKHIVARFEQLYGE 758 (760)
Q Consensus 735 ~l~~L~~~~yGk~Vv~kLekl~~~ 758 (760)
++..|++++||++|+++||+++..
T Consensus 322 ~~~~L~~~~~g~~i~~kl~~~~~~ 345 (351)
T 3gvo_A 322 HITTLRKYTYGKHILAKLEKYYLK 345 (351)
T ss_dssp GHHHHTTSTTTHHHHHHHHHHTC-
T ss_pred HHHHHhcCCchHHHHHHHHHHHhh
Confidence 999999999999999999999864
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=6.6e-65 Score=557.18 Aligned_cols=341 Identities=45% Similarity=0.748 Sum_probs=322.0
Q ss_pred hhhHHHHHhhcccc-----ccchHHhHHHHHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCcccchhh
Q 004342 416 KKHSFLEELKSSNA-----QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 490 (760)
Q Consensus 416 ~rs~LLeeL~s~~~-----~~~~L~eI~GkvveLa~dq~gSRvIQ~lLe~~s~Eqr~~If~EL~p~~~eL~~D~yGnhVI 490 (760)
.|+.|||+|++++. +++.|+++.|+++++|+||+|||+||++|+++++++++.||+||.+++.+||+|+||||||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHH
Confidence 58999999998874 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCHHHHHHHHHHHhhccccccccccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCChhhhHhhhcCC
Q 004342 491 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVP 570 (760)
Q Consensus 491 QKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNhVLQklLe~~~ 570 (760)
||||++++++++..|++.+.|++.+|++|+|||||||++|++++.+++..|+.||.+++..|++|++||||+|+|+++++
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhHhhhccCCcchhHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhcCChhh----
Q 004342 571 AEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE---- 646 (760)
Q Consensus 571 ~e~~~~Ii~~L~~~i~~Ls~hkyGS~VLQklLe~~~~~~q~~~Il~eL~~~l~~La~Dq~GNyVVQ~LLe~~~~k~---- 646 (760)
++.+.+|++.+.+++.+|+.|+|||+|+|+||+++. ++++..|++++.+++..|++|+|||||||++|+.++++.
T Consensus 163 ~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~-~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~ 241 (369)
T 3k49_A 163 IEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGS-SEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMV 241 (369)
T ss_dssp GGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhH
Confidence 999999999999999999999999999999999987 556788999999999999999999999999999998865
Q ss_pred --HHHHHHHHHHHHHHHhcCccHHHHHHHHHHhCCHHHHHHHHHHHhcCC-------CCcHHHHHhhcCCChhHHHHHHH
Q 004342 647 --RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQS-------EENDNLLVMMKDQYANYVVQKIL 717 (760)
Q Consensus 647 --R~~Iie~L~~~l~~Ls~~K~GS~VVEk~L~~a~~keRk~II~eLl~~~-------~~ke~L~~La~DqyGnyVIQklL 717 (760)
+..|++.|.+++.+|+++||||+|||+||+++++++|+.|+++|+... ++++.+..|++|+|||||||++|
T Consensus 242 ~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l 321 (369)
T 3k49_A 242 DIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLV 321 (369)
T ss_dssp HHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHH
Confidence 578999999999999999999999999999999999999999998743 23467899999999999999999
Q ss_pred hhCCHHHHHHHHHHHHHhHHHHhh-CCChHHHHHHHHHHHh
Q 004342 718 EKCNEKLRETLISRIRVHCDALKK-YTYGKHIVARFEQLYG 757 (760)
Q Consensus 718 ~~~dd~~rk~Il~~Lk~~l~~L~~-~~yGk~Vv~kLekl~~ 757 (760)
+.+++++|+.|+++|++++.+|++ ++||++|++++||++.
T Consensus 322 ~~~~~~~~~~l~~~i~p~l~~L~~~~~~G~~~~~~~e~~~~ 362 (369)
T 3k49_A 322 NVSEGEGKKLIVIAIRAYLDKLNKSNSLGNRHLASVEKLAA 362 (369)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHH
Confidence 999999999999999999999987 5999999999999976
No 3
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=9.2e-62 Score=540.29 Aligned_cols=344 Identities=28% Similarity=0.520 Sum_probs=312.3
Q ss_pred CCCCCcccccccCCCcccCchhhhHHHHHhhccccccchHHhH--HHHHHHHhcCCCcCHHHHHhhhcC-CHHHHHHHHH
Q 004342 395 GIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDI--AGRIVEFSVDQHGSRFIQQKLEHC-SAEEKVSVFK 471 (760)
Q Consensus 395 ~~~~~W~~~r~~~~~~~~~~~~rs~LLeeL~s~~~~~~~L~eI--~GkvveLa~dq~gSRvIQ~lLe~~-s~Eqr~~If~ 471 (760)
.++|.|..++.++ +.+. +.|.++ +|+|+++|+||+|||+||++|+++ ++++++.||+
T Consensus 3 ~~~~~w~~~~~~~----~~~~----------------~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~ 62 (412)
T 3k62_A 3 NVLPTWSLDSNGE----MRSR----------------LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFE 62 (412)
T ss_dssp --CCGGGBCTTSS----BCTT----------------CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred CcCccchhcccCC----CCCC----------------CcHHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHH
Confidence 4789999999888 4332 467777 699999999999999999999997 9999999999
Q ss_pred HHhhc---hhhhccCcccchhhhhhhccCCH-------HHHHHHHHHHhhccccccccccccHHHHHHHHhhCHHHHHHH
Q 004342 472 EVLPH---ASKLMTDVFGNYVIQKFFEHGSP-------DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQL 541 (760)
Q Consensus 472 EL~p~---~~eL~~D~yGnhVIQKLLe~~s~-------eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~as~eqr~~L 541 (760)
||.++ +.+||+|+||||||||||+++++ +++..|++.+.|++.+|+.|+|||||||++|+.++.+++..|
T Consensus 63 el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~i 142 (412)
T 3k62_A 63 QVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKL 142 (412)
T ss_dssp HHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHH
Confidence 99986 89999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHh--hhhHhHHhhcccCChhhhHhhhcCChhHHHHHHHHhh--hhHhhhccCCcchhHHHHHHhhCCCh---------
Q 004342 542 VLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR--GQVATLSTHPYGCRVIQRVLEHCSDE--------- 608 (760)
Q Consensus 542 v~EL--~g~i~~L~kDq~GNhVLQklLe~~~~e~~~~Ii~~L~--~~i~~Ls~hkyGS~VLQklLe~~~~~--------- 608 (760)
+.|| .+++..|++|++||||||+||++++++.+++|++.+. +++.+|++|+|||+|||+||+++.++
T Consensus 143 v~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~ 222 (412)
T 3k62_A 143 VQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSA 222 (412)
T ss_dssp HHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHH
T ss_pred HHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhh
Confidence 9999 6899999999999999999999999999999999998 59999999999999999999999753
Q ss_pred --HHHH----HHHHHHHHHHHHHhhcccchHHHHHHHhcCChh-hHHHHHH-HHHHHHHHHhcCccHHHHHHHHHHhCCH
Q 004342 609 --QQGQ----CIVDEILESAFALAQDQYGNYVTQHVLERGKSY-ERTQILS-KLAGKIVQMSQHKYASNVVEKCLEYGDT 680 (760)
Q Consensus 609 --~q~~----~Il~eL~~~l~~La~Dq~GNyVVQ~LLe~~~~k-~R~~Iie-~L~~~l~~Ls~~K~GS~VVEk~L~~a~~ 680 (760)
+++. .++++|..++..|++|+|||||||++|+++.+. .|..|++ .|.+++.+||++||||+|||+||+++++
T Consensus 223 ~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~ 302 (412)
T 3k62_A 223 AQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPL 302 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCH
Confidence 2343 467778888899999999999999999998876 4888887 5999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-----CCCcHHHHHhhcCCChhHHHHHHHhhCCHH--------------------HHHHHHHHHHHh
Q 004342 681 AERELLIEEILGQ-----SEENDNLLVMMKDQYANYVVQKILEKCNEK--------------------LRETLISRIRVH 735 (760)
Q Consensus 681 keRk~II~eLl~~-----~~~ke~L~~La~DqyGnyVIQklL~~~dd~--------------------~rk~Il~~Lk~~ 735 (760)
++|+.|+++|+.. ..+++.+..|++|+|||||||++|+++++. .++.|+.+|++|
T Consensus 303 ~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~ 382 (412)
T 3k62_A 303 ELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKE 382 (412)
T ss_dssp HHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccCCccccchHHHHHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999863 123467999999999999999999999775 257899999999
Q ss_pred HHHHhhCCChHHHHHHHHHHHhc
Q 004342 736 CDALKKYTYGKHIVARFEQLYGE 758 (760)
Q Consensus 736 l~~L~~~~yGk~Vv~kLekl~~~ 758 (760)
...|++++|||||+++++++..+
T Consensus 383 ~~~L~~~~~Gk~i~~~l~~~~~~ 405 (412)
T 3k62_A 383 RHRLSRFSSGKKMIETLANLRST 405 (412)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHC-
T ss_pred HHHhccCCCccHHHHHHHHhhcc
Confidence 99999999999999999998654
No 4
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1.9e-59 Score=517.20 Aligned_cols=325 Identities=26% Similarity=0.515 Sum_probs=295.7
Q ss_pred cchHHhH--HHHHHHHhcCCCcCHHHHHhhhcCCHHH-HHHHHHHHh---hchhhhccCcccchhhhhhhccCCHHHHHH
Q 004342 431 KFELSDI--AGRIVEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVL---PHASKLMTDVFGNYVIQKFFEHGSPDQRKE 504 (760)
Q Consensus 431 ~~~L~eI--~GkvveLa~dq~gSRvIQ~lLe~~s~Eq-r~~If~EL~---p~~~eL~~D~yGnhVIQKLLe~~s~eqr~~ 504 (760)
.+.|.++ +|+++++|+||+||||||++|+.+++++ ++.||+||. +++.+||+|+||||||||||++++++++..
T Consensus 10 ~~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~ 89 (382)
T 3v71_A 10 FISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRE 89 (382)
T ss_dssp -CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHH
T ss_pred cCcHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHH
Confidence 4578888 7999999999999999999999998655 789999985 789999999999999999999999999999
Q ss_pred HHHH-HhhccccccccccccHHHHHHHHhhCHHHHHHHHHHhhh-hHhHHhhcccCChhhhHhhhcCChhHHHHHHHHhh
Q 004342 505 LAEK-LVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG-HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR 582 (760)
Q Consensus 505 Ii~~-L~g~v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g-~i~~L~kDq~GNhVLQklLe~~~~e~~~~Ii~~L~ 582 (760)
|+.. +.+++..|+.|+|||||||+++++++.+++..|+.||.+ ++..|++|++||||||+||++++++.+++|++.+.
T Consensus 90 li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~ 169 (382)
T 3v71_A 90 LLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLS 169 (382)
T ss_dssp HHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHH
T ss_pred HHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHh
Confidence 9987 689999999999999999999999999999999999998 89999999999999999999999999999999997
Q ss_pred --hhHhhhccCCcchhHHHHHHhhCCChHH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHhcCCh--hhHH
Q 004342 583 --GQVATLSTHPYGCRVIQRVLEHCSDEQQ----------GQCIVDEILESAFALAQDQYGNYVTQHVLERGKS--YERT 648 (760)
Q Consensus 583 --~~i~~Ls~hkyGS~VLQklLe~~~~~~q----------~~~Il~eL~~~l~~La~Dq~GNyVVQ~LLe~~~~--k~R~ 648 (760)
+++.++++|+|||+|||+||+++.++.+ ...|+++|..++..|++|+|||||||++|+++.+ +.|.
T Consensus 170 ~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~ 249 (382)
T 3v71_A 170 SGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRD 249 (382)
T ss_dssp STTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHH
T ss_pred cccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHH
Confidence 6999999999999999999999875421 2346677778888999999999999999999874 4688
Q ss_pred HHHHH-HHHHHHHHhcCccHHHHHHHHHHhCCHHHHHHHHHHHhcC-----CCCcHHHHHhhcCCChhHHHHHHHhhCCH
Q 004342 649 QILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ-----SEENDNLLVMMKDQYANYVVQKILEKCNE 722 (760)
Q Consensus 649 ~Iie~-L~~~l~~Ls~~K~GS~VVEk~L~~a~~keRk~II~eLl~~-----~~~ke~L~~La~DqyGnyVIQklL~~~dd 722 (760)
.|++. |.+++.+|+++||||+|||+||++++++.|+.|+++|+.. ..+++.|..|++|+|||||||++|+.+++
T Consensus 250 ~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~ 329 (382)
T 3v71_A 250 TIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTA 329 (382)
T ss_dssp HHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHccc
Confidence 99974 9999999999999999999999999999999999999862 12346899999999999999999999876
Q ss_pred H-------------------HHHHHHHHHHHhHHHHhhCCChHHHHHHHHHH
Q 004342 723 K-------------------LRETLISRIRVHCDALKKYTYGKHIVARFEQL 755 (760)
Q Consensus 723 ~-------------------~rk~Il~~Lk~~l~~L~~~~yGk~Vv~kLekl 755 (760)
. .+++|+++|++|+..|+.++|||||+++|+|.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~~ 381 (382)
T 3v71_A 330 ALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRH 381 (382)
T ss_dssp HCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHC
T ss_pred ccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHhc
Confidence 3 25799999999999999999999999999983
No 5
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=2.6e-59 Score=504.96 Aligned_cols=318 Identities=31% Similarity=0.499 Sum_probs=297.1
Q ss_pred chHHhHHHHHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCcccchhhhhhhccCCHHHHHHHHHHHhh
Q 004342 432 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVG 511 (760)
Q Consensus 432 ~~L~eI~GkvveLa~dq~gSRvIQ~lLe~~s~Eqr~~If~EL~p~~~eL~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g 511 (760)
..+++++|+++++|+||+|||+||++|++++++++..||+|+.+++.+||+|+||||||||||++++++++..|++.+.+
T Consensus 6 ~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~ 85 (333)
T 3bwt_A 6 AVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSP 85 (333)
T ss_dssp CCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGG
T ss_pred CcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccHHHHHHHHhhC-HHHHHHHHHHhhhhHhHHhhcccCChhhhHhhhcCChhHHHHHHHHhhhhHhhhcc
Q 004342 512 QVLPLSLQMYGCRVIQKALEVIE-LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLST 590 (760)
Q Consensus 512 ~v~~Ls~h~yGSrVIQklLe~as-~eqr~~Lv~EL~g~i~~L~kDq~GNhVLQklLe~~~~e~~~~Ii~~L~~~i~~Ls~ 590 (760)
++.+|++|+|||||||+++++++ ++++..+++||.+++..|++|++||||+|+|+++++++.+++|++.+.+++.+|+.
T Consensus 86 ~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~~ 165 (333)
T 3bwt_A 86 HFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIAT 165 (333)
T ss_dssp GHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHHT
T ss_pred HHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999985 66777789999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhcCChhh----HHHHHHHHHHHHHHHhcCcc
Q 004342 591 HPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE----RTQILSKLAGKIVQMSQHKY 666 (760)
Q Consensus 591 hkyGS~VLQklLe~~~~~~q~~~Il~eL~~~l~~La~Dq~GNyVVQ~LLe~~~~k~----R~~Iie~L~~~l~~Ls~~K~ 666 (760)
|+|||+|+|+|++++. +++++.|++++.+++..|++|+|||||||++|++++++. ++.|++.|++++.+|++++|
T Consensus 166 ~~~Gs~Vvq~~l~~~~-~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k~ 244 (333)
T 3bwt_A 166 HRHGCCVLQRCLDHGT-TEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKF 244 (333)
T ss_dssp STTHHHHHHHHHHHCC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTSTT
T ss_pred CchhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHcccH
Confidence 9999999999999976 567889999999999999999999999999999877643 68999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCcHHHHHhhcCCChhHHHHHHHhhCCHH---HHHHHHHHHHHhH-HHHhhC
Q 004342 667 ASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEK---LRETLISRIRVHC-DALKKY 742 (760)
Q Consensus 667 GS~VVEk~L~~a~~keRk~II~eLl~~~~~ke~L~~La~DqyGnyVIQklL~~~dd~---~rk~Il~~Lk~~l-~~L~~~ 742 (760)
||+||++||+.++ .++.++.+++... +.+.+..|+.|+|||||||++|+.++++ .++.|+++|++++ .+|+.+
T Consensus 245 gs~Vvek~l~~~~--~~~~ii~ell~~~-~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr~~ 321 (333)
T 3bwt_A 245 GSNVIEKILKTAI--VSEPMILEILNNG-GETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIRNT 321 (333)
T ss_dssp HHHHHHHHHTSHH--HHHHHHHHHHHTT-HHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGGGS
T ss_pred HHHHHHHHHcccc--hhHHHHHHHHhcc-CchHHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHHHhchhhhcCC
Confidence 9999999999754 4678999998632 1368999999999999999999998765 7899999999998 999999
Q ss_pred CChHHHHHHHH
Q 004342 743 TYGKHIVARFE 753 (760)
Q Consensus 743 ~yGk~Vv~kLe 753 (760)
+|||||+++|+
T Consensus 322 ~~G~~i~~~l~ 332 (333)
T 3bwt_A 322 PHGKRIIGMLH 332 (333)
T ss_dssp HHHHHHHTTSC
T ss_pred CCHHHHHHHhc
Confidence 99999998764
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=2.6e-44 Score=391.54 Aligned_cols=265 Identities=29% Similarity=0.465 Sum_probs=246.7
Q ss_pred cCchhhhHHHHHhh---ccccccchHHhHHHHHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCcccch
Q 004342 412 FEDSKKHSFLEELK---SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 488 (760)
Q Consensus 412 ~~~~~rs~LLeeL~---s~~~~~~~L~eI~GkvveLa~dq~gSRvIQ~lLe~~s~Eqr~~If~EL~p~~~eL~~D~yGnh 488 (760)
+.|.+++.++++|. +.+++...++++.|++++++.|++||||||++|+.++.+++..|++|+.+++.+|++|+||||
T Consensus 68 ~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ 147 (351)
T 3gvo_A 68 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 147 (351)
T ss_dssp HTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHH
T ss_pred HhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhH
Confidence 45556666666544 234556677889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCHHHHHHHHHHHhhccccccccccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCChhhhHhhhc
Q 004342 489 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIEC 568 (760)
Q Consensus 489 VIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNhVLQklLe~ 568 (760)
||||+|++++++++..|++.+.+++.+|++|+|||||||++|++++++++..|+++|.+++..|++|+|||||+|++|++
T Consensus 148 ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~ 227 (351)
T 3gvo_A 148 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEH 227 (351)
T ss_dssp HHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhhhHhhhccCCcchhHHHHHHhhCCChHHHHHHHHHHHH-------HHHHHhhcccchHHHHHHHhc
Q 004342 569 VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILE-------SAFALAQDQYGNYVTQHVLER 641 (760)
Q Consensus 569 ~~~e~~~~Ii~~L~~~i~~Ls~hkyGS~VLQklLe~~~~~~q~~~Il~eL~~-------~l~~La~Dq~GNyVVQ~LLe~ 641 (760)
++++.+..|++.+.+++..|++|+|||+|||+||+++. ++++..|++++.. .+..|+.|+|||||||++|+.
T Consensus 228 ~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~-~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~ 306 (351)
T 3gvo_A 228 GRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHAS-RAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 306 (351)
T ss_dssp SCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCC-HHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHh
Confidence 99999999999999999999999999999999999987 4578889999996 799999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHh
Q 004342 642 GKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEY 677 (760)
Q Consensus 642 ~~~k~R~~Iie~L~~~l~~Ls~~K~GS~VVEk~L~~ 677 (760)
+++++|+.|++.|++++..|+.++||++|+.++...
T Consensus 307 ~~~~~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~~ 342 (351)
T 3gvo_A 307 AEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKY 342 (351)
T ss_dssp CCHHHHHHHHHHHGGGHHHHTTSTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 999999999999999999999999999999998775
No 7
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=2.6e-41 Score=370.23 Aligned_cols=302 Identities=21% Similarity=0.315 Sum_probs=278.8
Q ss_pred CcCHHHHHhhhcC--CHHHHHHHHHHHhhchhhhccCcccchhhhhhhccCCHHHHHHHHHHHhhccccccccccccHHH
Q 004342 449 HGSRFIQQKLEHC--SAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVI 526 (760)
Q Consensus 449 ~gSRvIQ~lLe~~--s~Eqr~~If~EL~p~~~eL~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVI 526 (760)
+-|++++.+.... +..++...++++.+++.+|++|++|+++|||+|++++++++..|++++.+++.+|+.|+||++||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHH
Confidence 3588888888776 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCChhhhHhhhcCChhHHHHHHHHhhhhHhhhccCCcchhHHHHHHhhCC
Q 004342 527 QKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 606 (760)
Q Consensus 527 QklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNhVLQklLe~~~~e~~~~Ii~~L~~~i~~Ls~hkyGS~VLQklLe~~~ 606 (760)
|++|++++.+++..|++++.+++..|+.|++|++|+|+++++++++.+..|++.+.+++..|++|++|++|||++|+.+.
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHhCCHHH----
Q 004342 607 DEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAE---- 682 (760)
Q Consensus 607 ~~~q~~~Il~eL~~~l~~La~Dq~GNyVVQ~LLe~~~~k~R~~Iie~L~~~l~~Ls~~K~GS~VVEk~L~~a~~ke---- 682 (760)
++.+..|++.+.+++..|+.++||+.|+|++|+++++++|..|++.|.+++..|+.+.||++||+++|+.++++.
T Consensus 163 -~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~ 241 (369)
T 3k49_A 163 -IEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMV 241 (369)
T ss_dssp -GGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhH
Confidence 446788999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred --HHHHHHHHhcCCCCcHHHHHhhcCCChhHHHHHHHhhCCHHHHHHHHHHHHH-------------hHHHHhhCCChHH
Q 004342 683 --RELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRV-------------HCDALKKYTYGKH 747 (760)
Q Consensus 683 --Rk~II~eLl~~~~~ke~L~~La~DqyGnyVIQklL~~~dd~~rk~Il~~Lk~-------------~l~~L~~~~yGk~ 747 (760)
++.|++.|. +++.+|++|+||+.||++||+.+++++|+.|+++|.. .+..|..++||.+
T Consensus 242 ~~~~~i~~~l~------~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNy 315 (369)
T 3k49_A 242 DIKQEIIETVA------NNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANY 315 (369)
T ss_dssp HHHHHHHHHHH------TTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHH
T ss_pred hHHHHHHHHHH------HHHHHHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHH
Confidence 678888885 4799999999999999999999999999999999854 4778999999999
Q ss_pred HHHHHHHHHh
Q 004342 748 IVARFEQLYG 757 (760)
Q Consensus 748 Vv~kLekl~~ 757 (760)
||.++...++
T Consensus 316 Viq~~l~~~~ 325 (369)
T 3k49_A 316 VIQKLVNVSE 325 (369)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 9999887654
No 8
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=1.9e-39 Score=349.89 Aligned_cols=282 Identities=20% Similarity=0.302 Sum_probs=260.6
Q ss_pred HHHHHHhhchhhhccCcccchhhhhhhccCCHHHHHHHHHHHhhccccccccccccHHHHHHHHhhCHHHHHHHHHHhhh
Q 004342 468 SVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG 547 (760)
Q Consensus 468 ~If~EL~p~~~eL~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g 547 (760)
.+++++.+++.+|++|++|+++|||+|++++++++..|++++.+++.+|+.|+||++|||+++++++.+++..|++++.+
T Consensus 6 ~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~ 85 (333)
T 3bwt_A 6 AVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSP 85 (333)
T ss_dssp CCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGG
T ss_pred CcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHhhcccCChhhhHhhhcCC-hhHHHHHHHHhhhhHhhhccCCcchhHHHHHHhhCCChHHHHHHHHHHHHHHHHHh
Q 004342 548 HVMRCVRDQNGNHVIQKCIECVP-AEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALA 626 (760)
Q Consensus 548 ~i~~L~kDq~GNhVLQklLe~~~-~e~~~~Ii~~L~~~i~~Ls~hkyGS~VLQklLe~~~~~~q~~~Il~eL~~~l~~La 626 (760)
++..|+.|++|++|+|+++++++ ++.+..|++.|.+++..|+.++||++|||++|+... ++.++.|++.+.+++..|+
T Consensus 86 ~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~-~~~~~~i~~~l~~~~~~l~ 164 (333)
T 3bwt_A 86 HFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLK-PENFQFIFDAISDSCIDIA 164 (333)
T ss_dssp GHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875 566788999999999999999999999999999875 5678889999999999999
Q ss_pred hcccchHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHhCCHHH----HHHHHHHHhcCCCCcHHHHH
Q 004342 627 QDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAE----RELLIEEILGQSEENDNLLV 702 (760)
Q Consensus 627 ~Dq~GNyVVQ~LLe~~~~k~R~~Iie~L~~~l~~Ls~~K~GS~VVEk~L~~a~~ke----Rk~II~eLl~~~~~ke~L~~ 702 (760)
.++||+.|||++|+++++++++.|++.|.+++..|+.+.||++||+++|+.++++. ++.|++.|. +.+.+
T Consensus 165 ~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~------~~~~~ 238 (333)
T 3bwt_A 165 THRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLK------PRAIE 238 (333)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHG------GGHHH
T ss_pred cCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHH------HHHHH
Confidence 99999999999999999999999999999999999999999999999999887654 578888884 68999
Q ss_pred hhcCCChhHHHHHHHhhCCHHHHHHHHHHHH-----HhHHHHhhCCChHHHHHHHHHHHhc
Q 004342 703 MMKDQYANYVVQKILEKCNEKLRETLISRIR-----VHCDALKKYTYGKHIVARFEQLYGE 758 (760)
Q Consensus 703 La~DqyGnyVIQklL~~~dd~~rk~Il~~Lk-----~~l~~L~~~~yGk~Vv~kLekl~~~ 758 (760)
|++++||++||+++|+..+ .++.++.++. +++..|..++||.+|+.++...+++
T Consensus 239 Ls~~k~gs~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~ 297 (333)
T 3bwt_A 239 LSIHKFGSNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHK 297 (333)
T ss_dssp HHTSTTHHHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHcccc--hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccC
Confidence 9999999999999999754 4667777765 5799999999999999999887653
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1.4e-37 Score=342.97 Aligned_cols=283 Identities=22% Similarity=0.312 Sum_probs=253.8
Q ss_pred HHHH--hhchhhhccCcccchhhhhhhccCCHHH-HHHHHHHHh---hccccccccccccHHHHHHHHhhCHHHHHHHHH
Q 004342 470 FKEV--LPHASKLMTDVFGNYVIQKFFEHGSPDQ-RKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 543 (760)
Q Consensus 470 f~EL--~p~~~eL~~D~yGnhVIQKLLe~~s~eq-r~~Ii~~L~---g~v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~ 543 (760)
+.++ ++++.++++|++|+.+||++|+.+++++ +..|++++. .++.+|+.|+||++||||++++++.+++..|+.
T Consensus 13 L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~ 92 (382)
T 3v71_A 13 LEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLR 92 (382)
T ss_dssp HHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4566 6999999999999999999999998654 788899885 578999999999999999999999999999998
Q ss_pred H-hhhhHhHHhhcccCChhhhHhhhcCChhHHHHHHHHhhh-hHhhhccCCcchhHHHHHHhhCCChHHHHHHHHHHH--
Q 004342 544 E-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRG-QVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL-- 619 (760)
Q Consensus 544 E-L~g~i~~L~kDq~GNhVLQklLe~~~~e~~~~Ii~~L~~-~i~~Ls~hkyGS~VLQklLe~~~~~~q~~~Il~eL~-- 619 (760)
+ +.+++..|+.|.+|++|+|++|++++.+.+..|++.+.+ ++..|+.+++|++|||+||+.+.. +.++.|++++.
T Consensus 93 ~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~-~~~~~Ii~~~~~~ 171 (382)
T 3v71_A 93 QMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPV-DMWTFFVHFLSSG 171 (382)
T ss_dssp HHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCT-TTSHHHHHHHHST
T ss_pred HHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCH-HHHHHHHHHHhcc
Confidence 7 589999999999999999999999999999999999998 899999999999999999998864 46778999997
Q ss_pred HHHHHHhhcccchHHHHHHHhcCChhh-------H----HHHHHHHHHHHHHHhcCccHHHHHHHHHHhCCH--HHHHHH
Q 004342 620 ESAFALAQDQYGNYVTQHVLERGKSYE-------R----TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDT--AERELL 686 (760)
Q Consensus 620 ~~l~~La~Dq~GNyVVQ~LLe~~~~k~-------R----~~Iie~L~~~l~~Ls~~K~GS~VVEk~L~~a~~--keRk~I 686 (760)
+++..|+.|+||++|||++|+++++.. | ..|++.+.+++..|++++||++||++||+++++ +.|..|
T Consensus 172 ~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~i 251 (382)
T 3v71_A 172 DSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTI 251 (382)
T ss_dssp THHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHHH
T ss_pred cchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHHHH
Confidence 589999999999999999999887643 2 346677778889999999999999999999764 468889
Q ss_pred HHHHhcCCCCcHHHHHhhcCCChhHHHHHHHhhCCHHHHHHHHHHHHH-----------hHHHHhhCCChHHHHHHHHHH
Q 004342 687 IEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRV-----------HCDALKKYTYGKHIVARFEQL 755 (760)
Q Consensus 687 I~eLl~~~~~ke~L~~La~DqyGnyVIQklL~~~dd~~rk~Il~~Lk~-----------~l~~L~~~~yGk~Vv~kLekl 755 (760)
+.+.+. +++..|++|+||++||++||+.+++++|+.|+++|.. .+..|..+.||.+||.++...
T Consensus 252 i~~~l~-----~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~ 326 (382)
T 3v71_A 252 IDKCLL-----RNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISI 326 (382)
T ss_dssp HHHTTT-----TCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHH
Confidence 986332 5799999999999999999999999999999999974 789999999999999999998
Q ss_pred Hhc
Q 004342 756 YGE 758 (760)
Q Consensus 756 ~~~ 758 (760)
+++
T Consensus 327 ~~~ 329 (382)
T 3v71_A 327 CTA 329 (382)
T ss_dssp HHH
T ss_pred ccc
Confidence 874
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=2e-36 Score=336.76 Aligned_cols=283 Identities=19% Similarity=0.292 Sum_probs=257.3
Q ss_pred HHHH-hhchhhhccCcccchhhhhhhccC-CHHHHHHHHHHHhhc---cccccccccccHHHHHHHHhhCH-------HH
Q 004342 470 FKEV-LPHASKLMTDVFGNYVIQKFFEHG-SPDQRKELAEKLVGQ---VLPLSLQMYGCRVIQKALEVIEL-------HQ 537 (760)
Q Consensus 470 f~EL-~p~~~eL~~D~yGnhVIQKLLe~~-s~eqr~~Ii~~L~g~---v~~Ls~h~yGSrVIQklLe~as~-------eq 537 (760)
.+-+ ++++.++++|++|+.+||++|+++ +++++..|++++.++ +.+|+.|+||.+||||++++++. ++
T Consensus 23 ~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q 102 (412)
T 3k62_A 23 SEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKR 102 (412)
T ss_dssp HHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHH
T ss_pred HHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHH
Confidence 3344 699999999999999999999997 899999999999886 89999999999999999999999 99
Q ss_pred HHHHHHHhhhhHhHHhhcccCChhhhHhhhcCChhHHHHHHHHh--hhhHhhhccCCcchhHHHHHHhhCCChHHHHHHH
Q 004342 538 KSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF--RGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIV 615 (760)
Q Consensus 538 r~~Lv~EL~g~i~~L~kDq~GNhVLQklLe~~~~e~~~~Ii~~L--~~~i~~Ls~hkyGS~VLQklLe~~~~~~q~~~Il 615 (760)
+..|++.+.+++..|+.|++|++|+|++|+.++++.+..|++.+ .+++..|+.|++|++|||+||+.+. ++.++.|+
T Consensus 103 ~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~-~~~~~~I~ 181 (412)
T 3k62_A 103 QEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIP-LKNWEFIV 181 (412)
T ss_dssp HHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCC-HHHHHHHH
Confidence 99999999999999999999999999999999999999999999 6899999999999999999999985 56788899
Q ss_pred HHHH--HHHHHHhhcccchHHHHHHHhcCCh------------hhHH----HHHHHHHHHHHHHhcCccHHHHHHHHHHh
Q 004342 616 DEIL--ESAFALAQDQYGNYVTQHVLERGKS------------YERT----QILSKLAGKIVQMSQHKYASNVVEKCLEY 677 (760)
Q Consensus 616 ~eL~--~~l~~La~Dq~GNyVVQ~LLe~~~~------------k~R~----~Iie~L~~~l~~Ls~~K~GS~VVEk~L~~ 677 (760)
+.+. +++..|++++||+.|||++|+++.+ ++|. .|++.+..+...|+.++||.+||++||++
T Consensus 182 ~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~ 261 (412)
T 3k62_A 182 DFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSN 261 (412)
T ss_dssp HHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHC
T ss_pred HHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhc
Confidence 9998 5899999999999999999999874 2444 45667778889999999999999999999
Q ss_pred CCHH-HHHHHHHHHhcCCCCcHHHHHhhcCCChhHHHHHHHhhCCHHHHHHHHHHHHH-----------hHHHHhhCCCh
Q 004342 678 GDTA-ERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRV-----------HCDALKKYTYG 745 (760)
Q Consensus 678 a~~k-eRk~II~eLl~~~~~ke~L~~La~DqyGnyVIQklL~~~dd~~rk~Il~~Lk~-----------~l~~L~~~~yG 745 (760)
+.++ .|..|+...+. +++..|++++||+.||++||+.++++.|+.|+++|.. .+..|..+.||
T Consensus 262 g~~~~~r~~ii~~~l~-----~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyG 336 (412)
T 3k62_A 262 DDLAVYRECIIEKCLM-----RNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFG 336 (412)
T ss_dssp GGGHHHHHHHHHHHTT-----TCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTH
T ss_pred CCchhHHHHHHHHHHH-----HHHHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhccCCccccchHHHHHhcCCch
Confidence 8876 47888875332 5799999999999999999999999999999999985 48899999999
Q ss_pred HHHHHHHHHHHhc
Q 004342 746 KHIVARFEQLYGE 758 (760)
Q Consensus 746 k~Vv~kLekl~~~ 758 (760)
.+||.++...++|
T Consensus 337 NYViQ~~L~~~~~ 349 (412)
T 3k62_A 337 NYVVQCMLTICCD 349 (412)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc
Confidence 9999999998864
No 11
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=90.19 E-value=21 Score=38.17 Aligned_cols=182 Identities=13% Similarity=0.156 Sum_probs=81.9
Q ss_pred hhhcCCHHHHHHHHHHHhhchhhhccCcccchhhhhhhccCCHHHHHHHHHHHhhccccccccccccHHHHHHHHhh-CH
Q 004342 457 KLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI-EL 535 (760)
Q Consensus 457 lLe~~s~Eqr~~If~EL~p~~~eL~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~a-s~ 535 (760)
+|++.++++.+.|-.++ .-+...++++...++++|...+..-..-..|+..++++++.+ .+
T Consensus 30 vlk~L~~~ei~~l~~~m------------------a~l~~v~~~~~~~Vl~EF~~~~~~~~~i~~gg~~~~~~L~~aLg~ 91 (329)
T 3hjl_A 30 IVKELSEEELQKLFALA------------------KDLESVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENIKKVIPP 91 (329)
T ss_dssp HHHHSCHHHHHHHHHHH------------------HTCCCCCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHSCC
T ss_pred HHHcCCHHHHHHHHHHH------------------HccCCCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCH
Confidence 44555666666655554 234556777777777777665554433222225555555433 33
Q ss_pred HHHHHHHHHhhhhH----hHHhhcccCChhhhHhhhcCChhHHHHHHHHhhh----hHhhhccCCcchhHHHHHHhhCC-
Q 004342 536 HQKSQLVLELDGHV----MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRG----QVATLSTHPYGCRVIQRVLEHCS- 606 (760)
Q Consensus 536 eqr~~Lv~EL~g~i----~~L~kDq~GNhVLQklLe~~~~e~~~~Ii~~L~~----~i~~Ls~hkyGS~VLQklLe~~~- 606 (760)
+.-..|++++.+.. +..++.- --..+..+|..-.|.....|+..+.. .+........-..|+.++.....
T Consensus 92 ~~A~~ll~~i~~~~~~~~~~~L~~~-dp~~la~~i~~EhPQtiAlILs~L~p~~AA~vL~~Lp~~~r~ev~~Ria~l~~v 170 (329)
T 3hjl_A 92 TLAEKFRGILELGDAEKILKEIEKV-DSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENV 170 (329)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHhccccCCHHHHHHCC-CHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHccCCC
Confidence 33334444443321 1111111 11222223332233333333333221 11111122223355555555433
Q ss_pred ChHHHHHHHHHHHHHHHHHh----hcccchHHHHHHHhcCChhhHHHHHHHHHHH
Q 004342 607 DEQQGQCIVDEILESAFALA----QDQYGNYVTQHVLERGKSYERTQILSKLAGK 657 (760)
Q Consensus 607 ~~~q~~~Il~eL~~~l~~La----~Dq~GNyVVQ~LLe~~~~k~R~~Iie~L~~~ 657 (760)
.++..+.|-+.+...+..+. ...-|.-.+-.+|...+....+.|++.|...
T Consensus 171 ~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~il~~L~~~ 225 (329)
T 3hjl_A 171 NVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQSIGQE 225 (329)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 23333323222323333321 1234566677777777777777777777653
No 12
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=81.79 E-value=40 Score=34.97 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=68.0
Q ss_pred chhHHHHHHhhCCCh-HHHHHHHHHHHHHHHHHhhcccchHHHHHHHh---cCChhhHHHHHHHHHHHHHHHhcCcc-HH
Q 004342 594 GCRVIQRVLEHCSDE-QQGQCIVDEILESAFALAQDQYGNYVTQHVLE---RGKSYERTQILSKLAGKIVQMSQHKY-AS 668 (760)
Q Consensus 594 GS~VLQklLe~~~~~-~q~~~Il~eL~~~l~~La~Dq~GNyVVQ~LLe---~~~~k~R~~Iie~L~~~l~~Ls~~K~-GS 668 (760)
++.++=.+++.+.+. +..+.-+.+++..+..++ --++|...+++ +.+...|.+.++.+..-+..--...- +-
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l 206 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSL 206 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGG
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 345555666665543 233334444444444432 23445555544 55567788777776654444322211 22
Q ss_pred ---HHHHHHHHhCCHHHHHHHHHHHhcCCCCcHHHHHhhcCCChhHHHHHHHhhCCHHHHHHHHHHHHH
Q 004342 669 ---NVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRV 734 (760)
Q Consensus 669 ---~VVEk~L~~a~~keRk~II~eLl~~~~~ke~L~~La~DqyGnyVIQklL~~~dd~~rk~Il~~Lk~ 734 (760)
..|.+++.-.+...|+.-++.+.. +...+ |.- |-+.+....++.+..|.++++.
T Consensus 207 ~~~~~ia~ll~D~d~~VR~aAl~~lve-------~y~~~----Gd~-v~k~lg~L~~~~~~~l~er~~r 263 (266)
T 2of3_A 207 SVEKTVAPFVGDKDVNVRNAAINVLVA-------CFKFE----GDQ-MWKAAGRMADKDKSLVEERIKR 263 (266)
T ss_dssp CHHHHHGGGGGCSSHHHHHHHHHHHHH-------HHHHH----TTH-HHHHHCCCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHH-------HHHHh----hHH-HHHHHhcCCHHHHHHHHHHHhh
Confidence 335566666777788877777742 33333 333 2344455678888888877764
No 13
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.76 E-value=52 Score=31.85 Aligned_cols=222 Identities=12% Similarity=0.039 Sum_probs=112.1
Q ss_pred cCcccchhhhhhhccCCHHHHHHHHHHHhhccccccccccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCChh
Q 004342 482 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHV 561 (760)
Q Consensus 482 ~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNhV 561 (760)
.+..|.-.+......+..+..+.+++. ....-..+..|...+..+......+....|++. + ...-..+.+|...
T Consensus 35 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g-~~~~~~~~~g~t~ 108 (285)
T 1wdy_A 35 EEEGGWTPLHNAVQMSREDIVELLLRH---GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK--G-ADVNECDFYGFTA 108 (285)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--T-CCTTCBCTTCCBH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc--C-CCCCccCcccCCH
Confidence 366677777777777777666666553 111223456676677666666655443333331 0 0111346667777
Q ss_pred hhHhhhcCChhHHHHHHHHhhhh-Hh------hhccCCcchhHHHHHHhhCCChHHHHHHHHHHHHH--HHHHhhcccch
Q 004342 562 IQKCIECVPAEKIEFIISAFRGQ-VA------TLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILES--AFALAQDQYGN 632 (760)
Q Consensus 562 LQklLe~~~~e~~~~Ii~~L~~~-i~------~Ls~hkyGS~VLQklLe~~~~~~q~~~Il~eL~~~--l~~La~Dq~GN 632 (760)
+...+.....+..+.+++.-..- .. .-..+..|...+........ . .+++.+++. ...-..|..|.
T Consensus 109 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~----~~v~~Ll~~~~~~~~~~~~~g~ 183 (285)
T 1wdy_A 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH-V----EVLKILLDEMGADVNACDNMGR 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC-H----HHHHHHHHTSCCCTTCCCTTSC
T ss_pred HHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCC-H----HHHHHHHHhcCCCCCccCCCCC
Confidence 77777776666555555532110 00 00013445555555554432 1 233333322 11123456677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHH-hcCccHHHHHHHHHHhCCHHHHHHHHHHHhc-CCCCcHHHHHhhcCCChh
Q 004342 633 YVTQHVLERGKSYERTQILSKLAGKIVQM-SQHKYASNVVEKCLEYGDTAERELLIEEILG-QSEENDNLLVMMKDQYAN 710 (760)
Q Consensus 633 yVVQ~LLe~~~~k~R~~Iie~L~~~l~~L-s~~K~GS~VVEk~L~~a~~keRk~II~eLl~-~~~~ke~L~~La~DqyGn 710 (760)
..+...+..+.......+++.|..+=..+ ..+..|.-.+..+...+..+. ++.|+. ... + --..|..|.
T Consensus 184 t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~~g~--~---~~~~~~~g~ 254 (285)
T 1wdy_A 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL----VQRLLEQEHI--E---INDTDSDGK 254 (285)
T ss_dssp CHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH----HHHHHHSSSC--C---TTCCCTTSC
T ss_pred CHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH----HHHHHhccCC--C---ccccCCCCC
Confidence 77777777776666566776665432221 234556666666666665443 444443 110 0 012455565
Q ss_pred HHHHHHHhhCCHH
Q 004342 711 YVVQKILEKCNEK 723 (760)
Q Consensus 711 yVIQklL~~~dd~ 723 (760)
-.+..+......+
T Consensus 255 t~l~~A~~~~~~~ 267 (285)
T 1wdy_A 255 TALLLAVELKLKK 267 (285)
T ss_dssp CHHHHHHHTTCHH
T ss_pred cHHHHHHHcCcHH
Confidence 5555555554443
No 14
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=62.29 E-value=97 Score=32.14 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=38.1
Q ss_pred HHHHhhhcCCHHHHHHHHHHHhhchhhhccCcccchhhhhhhccCC---HHHHHHHHH-HHhhccccccccccccHHHHH
Q 004342 453 FIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGS---PDQRKELAE-KLVGQVLPLSLQMYGCRVIQK 528 (760)
Q Consensus 453 vIQ~lLe~~s~Eqr~~If~EL~p~~~eL~~D~yGnhVIQKLLe~~s---~eqr~~Ii~-~L~g~v~~Ls~h~yGSrVIQk 528 (760)
++| +|-.+++.|.+.+++++.=+ .|....+.. +++.++.... -..-..+++ .|-+++..| ..-++|++..
T Consensus 40 ~l~-~L~~~sp~q~e~lc~~L~l~--~lsd~~l~~-lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L--~~~ASR~L~s 113 (264)
T 2ilr_A 40 ELQ-LLHECSPSQMDLLCAQLQLP--QLSDLGLLR-LCTWLLALSPDLSLSNATVLTRSLFLGRILSL--TSSASRLLTT 113 (264)
T ss_dssp HHH-GGGGCCHHHHHHHHHHHTGG--GCCHHHHHH-HHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHC--SSCCCHHHHH
T ss_pred HHH-HHHhCCHHHHHHHHHHHhhc--cCCHHHHHH-HHHHHHcCCcchhhhhHHHHHHHHHHHHHHhc--cCcchhHHHH
Confidence 444 55569999999999998522 222222222 2244443321 112222222 245566555 6777888766
Q ss_pred HH
Q 004342 529 AL 530 (760)
Q Consensus 529 lL 530 (760)
++
T Consensus 114 al 115 (264)
T 2ilr_A 114 AL 115 (264)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 15
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=60.29 E-value=76 Score=31.77 Aligned_cols=120 Identities=11% Similarity=0.182 Sum_probs=67.7
Q ss_pred cchhhhhh--hccCCHHHHHHHHHHHhhccccccccc----cccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcccC-
Q 004342 486 GNYVIQKF--FEHGSPDQRKELAEKLVGQVLPLSLQM----YGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNG- 558 (760)
Q Consensus 486 GnhVIQKL--Le~~s~eqr~~Ii~~L~g~v~~Ls~h~----yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq~G- 558 (760)
-.-|+.++ ++..+++...+|-+.+...+....... -|...+-.++...+.+....+++.|...-.+++..--.
T Consensus 44 ~~ev~~Ria~l~~v~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~~~~A~IlN~~~~~~e~~il~~L~~~d~ela~~I~~~ 123 (216)
T 4fhr_B 44 QTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRR 123 (216)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTCC-------CSHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHHcCChhHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33444443 344578888888777777666554332 36677888888888888777777664432222221100
Q ss_pred ChhhhHhhhcCChhHHHHHHHHhhhhHhhhccCCcchhHHHHHHhhCC
Q 004342 559 NHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 606 (760)
Q Consensus 559 NhVLQklLe~~~~e~~~~Ii~~L~~~i~~Ls~hkyGS~VLQklLe~~~ 606 (760)
-|+...++ ..++..++.|+..+-.....++...-.-.+-+++|.+.+
T Consensus 124 mF~Fedl~-~ld~~~iq~llr~v~~~~L~~ALKga~~e~~e~il~nmS 170 (216)
T 4fhr_B 124 MFVFEDIL-KLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMS 170 (216)
T ss_dssp HSCGGGGG-GSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHTTSC
T ss_pred hcCHHHHh-CCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 12333333 345556666666665555555555555566666666654
No 16
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=57.12 E-value=1.5e+02 Score=33.42 Aligned_cols=109 Identities=15% Similarity=0.211 Sum_probs=63.8
Q ss_pred CChhhHHHHHHHHHHHHHHHhcCccHHH-------HHHHHHHhCCHHHHHHHHHHHhcCCC------CcHHHHHhhcCCC
Q 004342 642 GKSYERTQILSKLAGKIVQMSQHKYASN-------VVEKCLEYGDTAERELLIEEILGQSE------ENDNLLVMMKDQY 708 (760)
Q Consensus 642 ~~~k~R~~Iie~L~~~l~~Ls~~K~GS~-------VVEk~L~~a~~keRk~II~eLl~~~~------~ke~L~~La~Dqy 708 (760)
+++..|+++++.|..++..|-.+-.+.- .+.++|.-.+.++...++.-| +... +...|..++.++.
T Consensus 146 ~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL-~~lkl~~t~~g~qeLv~ii~eQa 224 (507)
T 3u0r_A 146 GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKIL-SGLKSLQTVSGRQQLVELVAEQA 224 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH-HTSGGGSSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HhcccccCchHHHHHHHHHHHHH
Confidence 5677888999999888877766555432 344555556677777777444 3210 1122333333221
Q ss_pred hhHHHHHHHhhCCHHHHHHHHHHHHHhHHHHhhCCChHHHHHHHHH
Q 004342 709 ANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQ 754 (760)
Q Consensus 709 GnyVIQklL~~~dd~~rk~Il~~Lk~~l~~L~~~~yGk~Vv~kLek 754 (760)
+ +...|+..|++.-++++..++..+.-......+.+.+..+-+
T Consensus 225 ~---L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 225 D---LEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp T---TTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred h---ccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence 1 011223356777788888888877777777777666665543
No 17
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=55.45 E-value=1.2e+02 Score=31.52 Aligned_cols=152 Identities=9% Similarity=0.087 Sum_probs=89.1
Q ss_pred HHHhhhcCCHHHHHHHHHHHhhc----hhhhccCcccchhhhhhhc--cCCHHHHHHHHHHHhhccccc---cccccccH
Q 004342 454 IQQKLEHCSAEEKVSVFKEVLPH----ASKLMTDVFGNYVIQKFFE--HGSPDQRKELAEKLVGQVLPL---SLQMYGCR 524 (760)
Q Consensus 454 IQ~lLe~~s~Eqr~~If~EL~p~----~~eL~~D~yGnhVIQKLLe--~~s~eqr~~Ii~~L~g~v~~L---s~h~yGSr 524 (760)
|-.+|+...+.....|+.-|.|. ++...-...-.-|+.++.. ..+|+...+|-+.|...+... ....-|..
T Consensus 66 La~~l~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~r~dV~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~ 145 (279)
T 3pkr_A 66 LADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLR 145 (279)
T ss_dssp HHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHH
T ss_pred HHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccccccccCcHH
Confidence 33455555555555555444332 2222223333444555443 446777776666665544433 45566778
Q ss_pred HHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcc-cCChhhhHhhhcCChhHHHHHHHHhhhhHhhhccCCcchhHHHHHHh
Q 004342 525 VIQKALEVIELHQKSQLVLELDGHVMRCVRDQ-NGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLE 603 (760)
Q Consensus 525 VIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq-~GNhVLQklLe~~~~e~~~~Ii~~L~~~i~~Ls~hkyGS~VLQklLe 603 (760)
.+-.++...+......++..|...-..++..- .--|+...++ ..++..++.|+..+-.....++...-.--+-+++|.
T Consensus 146 ~vA~ILN~~d~~~e~~iL~~L~~~dpelAe~Ir~~MF~FeDl~-~lddr~iq~llreV~~~~L~~ALKGa~~elrekil~ 224 (279)
T 3pkr_A 146 AVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIV-KLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLN 224 (279)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGGG-GSCHHHHHHHHHHSCHHHHHHHTTTSCHHHHHHHHT
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCHHHHHHHHHhccCHHHHh-cCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHH
Confidence 88899988888888888877654433333221 1124444444 456777788888887777777777666677778887
Q ss_pred hCC
Q 004342 604 HCS 606 (760)
Q Consensus 604 ~~~ 606 (760)
+.+
T Consensus 225 nmS 227 (279)
T 3pkr_A 225 NMS 227 (279)
T ss_dssp TSC
T ss_pred hcC
Confidence 765
No 18
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=50.83 E-value=1.5e+02 Score=29.00 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=68.4
Q ss_pred CCCcCHHHHHhhhcCCHHHHHHHHHHHhhchhh-----hccCcccchhhhhhhcc---CCHHHHHHHHHHHhh--c----
Q 004342 447 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK-----LMTDVFGNYVIQKFFEH---GSPDQRKELAEKLVG--Q---- 512 (760)
Q Consensus 447 dq~gSRvIQ~lLe~~s~Eqr~~If~EL~p~~~e-----L~~D~yGnhVIQKLLe~---~s~eqr~~Ii~~L~g--~---- 512 (760)
|.+|...|-...+.+..+..+.+++.....-.. ..+|..|.-.+.....+ +..+..+.|++.-.. .
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~ 89 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence 344444444455555555444444433222111 24466777666666654 555555555554211 0
Q ss_pred ccc--ccccccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcc--------------cCChhhhHhhhcCChhHHHH
Q 004342 513 VLP--LSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQ--------------NGNHVIQKCIECVPAEKIEF 576 (760)
Q Consensus 513 v~~--Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq--------------~GNhVLQklLe~~~~e~~~~ 576 (760)
+.. -..+..|.-.|-.+......+....|++. +.-. -..+. +|...+...+.....+..+.
T Consensus 90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~--ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN--GADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC--CCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 010 01234666666666655554433333331 1000 11121 56666666666655555555
Q ss_pred HHHHhhhhHhhhccCCcchhHHHHHHhhC
Q 004342 577 IISAFRGQVATLSTHPYGCRVIQRVLEHC 605 (760)
Q Consensus 577 Ii~~L~~~i~~Ls~hkyGS~VLQklLe~~ 605 (760)
+++.......--..+..|...|....+..
T Consensus 167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~ 195 (273)
T 2pnn_A 167 LLQNSWQPADISARDSVGNTVLHALVEVA 195 (273)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHC
T ss_pred HHhcccCCCCceeeCCCCCcHHHHHHHcc
Confidence 55421000111123445555555555443
No 19
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=50.43 E-value=2.6e+02 Score=29.76 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHhhCCHHHHHHHHHHHHHhHHHHh
Q 004342 706 DQYANYVVQKILEKCNEKLRETLISRIRVHCDALK 740 (760)
Q Consensus 706 DqyGnyVIQklL~~~dd~~rk~Il~~Lk~~l~~L~ 740 (760)
..-|.-.+-.+|...+....+.|++.|..+=++|+
T Consensus 196 ~~gG~~~vA~ILN~~d~~~e~~il~~L~~~dpela 230 (329)
T 3hjl_A 196 KLEGTAVAAELLNTLDKETRELILQSIGQEDPLLE 230 (329)
T ss_dssp CCCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHH
T ss_pred ccccHHHHHHHHhcCChHHHHHHHHHHHHhCHHHH
Confidence 35577888888888888888888888777655554
No 20
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=47.07 E-value=90 Score=35.22 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=83.0
Q ss_pred HHHHhcCCCcCHHH---HHhhhcCCHHHHHHHHHHHhhchhhhccCcccchhhhhhhccCCHHHHHHHHHHHhhcccccc
Q 004342 441 IVEFSVDQHGSRFI---QQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLS 517 (760)
Q Consensus 441 vveLa~dq~gSRvI---Q~lLe~~s~Eqr~~If~EL~p~~~eL~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls 517 (760)
+..+|.+.+-+|+. =++|......++..|=..|...+..=.+...+....| +..+.+..|+.++.-|..++..|-
T Consensus 89 Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~--i~~~~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 89 LPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQ--ILQGEDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp GGGGCCTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHGGGSC
T ss_pred hHHHhhhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHH--HcccchHHHHHHHHHHHHHHhhcc
Confidence 44566665566644 4566767777777666555444332222222222211 223567788888888888888777
Q ss_pred ccccccHH-------HHHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCChhhhHhh----------hcCChhHHHHHHHH
Q 004342 518 LQMYGCRV-------IQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI----------ECVPAEKIEFIISA 580 (760)
Q Consensus 518 ~h~yGSrV-------IQklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNhVLQklL----------e~~~~e~~~~Ii~~ 580 (760)
..-.+..+ +.++++-.+.++...+++-| ...++..+..|.--+-.++ ...+.+..+.++..
T Consensus 167 ~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL--~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C 244 (507)
T 3u0r_A 167 DEVLTKEVEELILTESKKVLEDVTGEEFVLFMKIL--SGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQC 244 (507)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH--HTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHH--HhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHH
Confidence 66654322 23344444555555444333 1122222222211111111 11356677777777
Q ss_pred hhhhHhhhccCCcchhHHHHHHh
Q 004342 581 FRGQVATLSTHPYGCRVIQRVLE 603 (760)
Q Consensus 581 L~~~i~~Ls~hkyGS~VLQklLe 603 (760)
+...+.-.+....++..+..+.+
T Consensus 245 ~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 245 TRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp HHHHGGGCBTTBCCHHHHHHHHH
T ss_pred HHHHHHHhccCCChHHHHHHHHH
Confidence 77776666666666665555444
No 21
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=44.94 E-value=3.5e+02 Score=29.70 Aligned_cols=15 Identities=13% Similarity=-0.102 Sum_probs=7.6
Q ss_pred HHhhhcCCHHHHHHH
Q 004342 455 QQKLEHCSAEEKVSV 469 (760)
Q Consensus 455 Q~lLe~~s~Eqr~~I 469 (760)
-.+|...+.+.+...
T Consensus 168 v~LL~s~~~~v~e~A 182 (529)
T 3tpo_A 168 ISLLASPHAHISEQA 182 (529)
T ss_dssp HHHTTCSCHHHHHHH
T ss_pred HHHHcCCCHHHHHHH
Confidence 345555555554443
No 22
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=44.11 E-value=47 Score=33.71 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=8.6
Q ss_pred HHHHhhCHHHHHHHHHHh
Q 004342 528 KALEVIELHQKSQLVLEL 545 (760)
Q Consensus 528 klLe~as~eqr~~Lv~EL 545 (760)
.+++..+.+.+..++.++
T Consensus 86 ~ll~~l~~d~~~~ll~~l 103 (278)
T 2yvy_A 86 EILEELSLDDLADALQAV 103 (278)
T ss_dssp HHHHHSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhC
Confidence 344444455555555444
No 23
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=43.82 E-value=3e+02 Score=30.20 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHH-HhhchhhhccCcc
Q 004342 460 HCSAEEKVSVFKE-VLPHASKLMTDVF 485 (760)
Q Consensus 460 ~~s~Eqr~~If~E-L~p~~~eL~~D~y 485 (760)
.++.+++..|++. ..|.++.|..+..
T Consensus 130 s~~~e~~~~vv~~GaIp~Lv~lL~s~~ 156 (510)
T 3ul1_B 130 SGTSEQTKAVVDGGAIPAFISLLASPH 156 (510)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 4567777777664 5666666666543
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.69 E-value=2.4e+02 Score=26.39 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=68.0
Q ss_pred cCCCcCHHHHHhhhcCCHHHHHHHHHHHhhc-hhhhccCcccchhhhhhhccCCHHHHHHHHHHHhhccccccccccccH
Q 004342 446 VDQHGSRFIQQKLEHCSAEEKVSVFKEVLPH-ASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCR 524 (760)
Q Consensus 446 ~dq~gSRvIQ~lLe~~s~Eqr~~If~EL~p~-~~eL~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSr 524 (760)
.|.+|.-.|....+.+..+..+.+++.+... ..--..|..|.-.+...+..+..+..+.+++. | ...-..+..|..
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g-~~~~~~~~~g~t 81 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA--G-ASPMALDRHGQT 81 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--T-CCTTCCCTTSCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc--C-CCccccCCCCCC
Confidence 3556666666677777777666666654322 22234566777777777777776665555542 1 112234556666
Q ss_pred HHHHHHHhhCHHHHHHHHHHhhh-hHhHHhhcccCChhhhHhhhcCChhHHHHHHH
Q 004342 525 VIQKALEVIELHQKSQLVLELDG-HVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS 579 (760)
Q Consensus 525 VIQklLe~as~eqr~~Lv~EL~g-~i~~L~kDq~GNhVLQklLe~~~~e~~~~Ii~ 579 (760)
.+..+......+....|++.... .+..-..+..|...+...+.....+..+.+++
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 137 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH
Confidence 66666665555444433332110 00112234556666655555554444444443
No 25
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.03 E-value=2.7e+02 Score=26.70 Aligned_cols=188 Identities=13% Similarity=0.101 Sum_probs=90.2
Q ss_pred HHHHhhhcCCHHHHHHHHHHHhhchh-----hhccCcccchhhhhhh---ccCCHHHHHHHHHHHhh--c------cccc
Q 004342 453 FIQQKLEHCSAEEKVSVFKEVLPHAS-----KLMTDVFGNYVIQKFF---EHGSPDQRKELAEKLVG--Q------VLPL 516 (760)
Q Consensus 453 vIQ~lLe~~s~Eqr~~If~EL~p~~~-----eL~~D~yGnhVIQKLL---e~~s~eqr~~Ii~~L~g--~------v~~L 516 (760)
.|-...+.++.+..+.+++.+..+-. ....+..|.-.+.... ..+..+..+.|++.-.. . ..--
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34445555555555555554333222 2223455777766555 45566666666654211 1 1111
Q ss_pred cccccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhc--------------ccCChhhhHhhhcCChhHHHHHHHHhh
Q 004342 517 SLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD--------------QNGNHVIQKCIECVPAEKIEFIISAFR 582 (760)
Q Consensus 517 s~h~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kD--------------q~GNhVLQklLe~~~~e~~~~Ii~~L~ 582 (760)
..+..|.-.|..+......+....|++. +.-. -..+ .+|...+...+.....+..+.+++.-.
T Consensus 88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 164 (260)
T 3jxi_A 88 DVYYRGQTALHIAIERRCKHYVELLVEK--GADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164 (260)
T ss_dssp CSSEESBCHHHHHHHTTCHHHHHHHHHT--TCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhC--CCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 2233666667666666665444333331 1001 1122 457777777777666665555555210
Q ss_pred hhHhhhccCCcchhHHHHHHhhCCChHHH----HHHHHHHHHHHHHH--------hhcccchHHHHHHHhcCC
Q 004342 583 GQVATLSTHPYGCRVIQRVLEHCSDEQQG----QCIVDEILESAFAL--------AQDQYGNYVTQHVLERGK 643 (760)
Q Consensus 583 ~~i~~Ls~hkyGS~VLQklLe~~~~~~q~----~~Il~eL~~~l~~L--------a~Dq~GNyVVQ~LLe~~~ 643 (760)
....--..+..|.-.+............. ..+++.+++.-..+ +.|..|.-.+......+.
T Consensus 165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence 00111134556666666665543321111 23444455444443 466667666666666554
No 26
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=37.23 E-value=4.5e+02 Score=28.78 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=16.7
Q ss_pred cCCHHHHHHHHHH-HhhchhhhccCccc
Q 004342 460 HCSAEEKVSVFKE-VLPHASKLMTDVFG 486 (760)
Q Consensus 460 ~~s~Eqr~~If~E-L~p~~~eL~~D~yG 486 (760)
.++.+++..|++. ..|.++.|..+...
T Consensus 149 ~~~~~~~~~vv~~Gaip~Lv~LL~s~~~ 176 (529)
T 3tpo_A 149 SGTSEQTKAVVDGGAIPAFISLLASPHA 176 (529)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 3566666666654 56667777666544
No 27
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=37.01 E-value=4.3e+02 Score=28.47 Aligned_cols=10 Identities=10% Similarity=0.255 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 004342 723 KLRETLISRI 732 (760)
Q Consensus 723 ~~rk~Il~~L 732 (760)
..|..++..+
T Consensus 534 ~Vr~~a~~~l 543 (588)
T 1b3u_A 534 NVRFNVAKSL 543 (588)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3444444433
No 28
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=36.48 E-value=2.9e+02 Score=26.40 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=90.6
Q ss_pred HhhhcCCHHHHHHHHHHHhhchhhh-----ccCcccchhhhhhhcc---CCHHHHHHHHHHHhh-c-cccc------ccc
Q 004342 456 QKLEHCSAEEKVSVFKEVLPHASKL-----MTDVFGNYVIQKFFEH---GSPDQRKELAEKLVG-Q-VLPL------SLQ 519 (760)
Q Consensus 456 ~lLe~~s~Eqr~~If~EL~p~~~eL-----~~D~yGnhVIQKLLe~---~s~eqr~~Ii~~L~g-~-v~~L------s~h 519 (760)
...+.+..+....+++.+..+-..+ ..|..|.-.+...... +..+..+.|++.-.. . +..+ ..+
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 87 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEF 87 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTT
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccccc
Confidence 3444444444444444443332222 2577888777777776 666666666654211 1 1111 122
Q ss_pred ccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcc-------------cCChhhhHhhhcCChhHHHHHHHHhhhhHh
Q 004342 520 MYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQ-------------NGNHVIQKCIECVPAEKIEFIISAFRGQVA 586 (760)
Q Consensus 520 ~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq-------------~GNhVLQklLe~~~~e~~~~Ii~~L~~~i~ 586 (760)
..|.-.|..+......+....|++. +.-.. ..+. +|...+...+.....+..+.+++.-.....
T Consensus 88 ~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~ 164 (256)
T 2etb_A 88 YQGHSALHIAIEKRSLQCVKLLVEN--GADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS 164 (256)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHHT--TCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHHc--CCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence 4576667666666655444433332 10011 1222 377777777776666666666552100111
Q ss_pred hhccCCcchhHHHHHHhhCCC-hH---HHHHHHHHHHHHHHHH--------hhcccchHHHHHHHhcCChh
Q 004342 587 TLSTHPYGCRVIQRVLEHCSD-EQ---QGQCIVDEILESAFAL--------AQDQYGNYVTQHVLERGKSY 645 (760)
Q Consensus 587 ~Ls~hkyGS~VLQklLe~~~~-~~---q~~~Il~eL~~~l~~L--------a~Dq~GNyVVQ~LLe~~~~k 645 (760)
--..+..|.-.+......... .+ ....+++.+++.-..+ +.|..|.-.+......+..+
T Consensus 165 ~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~ 235 (256)
T 2etb_A 165 LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE 235 (256)
T ss_dssp TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHH
Confidence 113455666666655553221 11 0112444444443333 45666776666666655433
No 29
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=36.43 E-value=1.6e+02 Score=30.64 Aligned_cols=52 Identities=8% Similarity=0.247 Sum_probs=29.6
Q ss_pred cCChhHHHHHHHHhhhhHhhhc---cCCcchhHHHHHHhhCCChHHHHHHHHHHHH
Q 004342 568 CVPAEKIEFIISAFRGQVATLS---THPYGCRVIQRVLEHCSDEQQGQCIVDEILE 620 (760)
Q Consensus 568 ~~~~e~~~~Ii~~L~~~i~~Ls---~hkyGS~VLQklLe~~~~~~q~~~Il~eL~~ 620 (760)
..+++..+.|-+.|...+..+. ...-|...+-.+|.... ....+.|++.|..
T Consensus 114 ~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d-~~~e~~iL~~L~~ 168 (279)
T 3pkr_A 114 EISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLG-QKSAKTTLARIES 168 (279)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSC-HHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCC-hHHHHHHHHHHHh
Confidence 3456666666665555544433 23336677777887765 3344556666654
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=36.15 E-value=2e+02 Score=36.89 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=35.2
Q ss_pred CchhhhHHHHHhhccccccchHHhHHHHHHHHhcCCCcCHHHHHhhhcCCHHHH
Q 004342 413 EDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEK 466 (760)
Q Consensus 413 ~~~~rs~LLeeL~s~~~~~~~L~eI~GkvveLa~dq~gSRvIQ~lLe~~s~Eqr 466 (760)
+++....|...|...+...+.+..|...+.+.-.-|.+..+|...|+...+|+-
T Consensus 525 ~P~~~~~fa~~L~~~~~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~ 578 (1630)
T 1xi4_A 525 SPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEG 578 (1630)
T ss_pred ChHHHHHHHHHHhcCCCCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhh
Confidence 344455566665555444555666666666666666778888889988877553
No 31
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=35.54 E-value=1.3e+02 Score=28.99 Aligned_cols=190 Identities=13% Similarity=0.113 Sum_probs=92.8
Q ss_pred cchhhhhhhccCCHHHHHHHHHHHhhccccccccccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCChhhhHh
Q 004342 486 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKC 565 (760)
Q Consensus 486 GnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNhVLQkl 565 (760)
|+..+...+..+..+..+.+++. +.-.....+..|...+..+......+....|++. ....-..+..|...+...
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH---GADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHH
T ss_pred cchHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHH
Confidence 44455555666666655555543 1112222356666777777777665544444331 111123567788888877
Q ss_pred hhcCChhHHHHHHHHhhhhHhhhccCCcchhHHHHHHhhCCChHHHHHHHHHHHHHHHHH-----------hhcccchHH
Q 004342 566 IECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFAL-----------AQDQYGNYV 634 (760)
Q Consensus 566 Le~~~~e~~~~Ii~~L~~~i~~Ls~hkyGS~VLQklLe~~~~~~q~~~Il~eL~~~l~~L-----------a~Dq~GNyV 634 (760)
+.....+..+.+++.-. .--..+..|...+........ . .+++.+++.-..+ ..+..|...
T Consensus 80 ~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~-~----~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGA---DVNECDFYGFTAFMEAAVYGK-V----KALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp HHHTCHHHHHHHHHTTC---CTTCBCTTCCBHHHHHHHTTC-H----HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH
T ss_pred HHcCCHHHHHHHHHcCC---CCCccCcccCCHHHHHHHhCC-H----HHHHHHHHhCCCcccccccHHHHHhhccCCCcH
Confidence 77777666666665311 011234455555555554432 1 2333333321111 114455555
Q ss_pred HHHHHhcCChhhHHHHHHHHHHH--HHHHhcCccHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004342 635 TQHVLERGKSYERTQILSKLAGK--IVQMSQHKYASNVVEKCLEYGDTAERELLIEEILG 692 (760)
Q Consensus 635 VQ~LLe~~~~k~R~~Iie~L~~~--l~~Ls~~K~GS~VVEk~L~~a~~keRk~II~eLl~ 692 (760)
+......+.. ++++.|..+ ..--..+..|...+..++..+.......+++.|+.
T Consensus 152 L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~ 207 (285)
T 1wdy_A 152 LMDAAEKGHV----EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207 (285)
T ss_dssp HHHHHHHTCH----HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH
T ss_pred HHHHHHcCCH----HHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHH
Confidence 5555554432 333333321 00112345566666666666654444556666664
No 32
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=34.79 E-value=4.6e+02 Score=28.20 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=7.2
Q ss_pred hhHHHHHhhccc
Q 004342 417 KHSFLEELKSSN 428 (760)
Q Consensus 417 rs~LLeeL~s~~ 428 (760)
-..|++.+.+.+
T Consensus 12 i~~l~~~l~s~~ 23 (588)
T 1b3u_A 12 IAVLIDELRNED 23 (588)
T ss_dssp HHHHHHHTTCSC
T ss_pred HHHHHHHhhccc
Confidence 345677776653
No 33
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.60 E-value=2.8e+02 Score=25.68 Aligned_cols=123 Identities=12% Similarity=-0.019 Sum_probs=59.7
Q ss_pred CcCHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCcccchhhhhhhccCCHHHHHHHHHHHhhccccccccccccHHHHH
Q 004342 449 HGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 528 (760)
Q Consensus 449 ~gSRvIQ~lLe~~s~Eqr~~If~EL~p~~~eL~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQk 528 (760)
++...|...++.+..+..+.+++. ..---..+..|.-.+...+..+..+..+.+++. +.......+..|...+..
T Consensus 8 ~~~~~l~~A~~~g~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 8 YSTWDIVKATQYGIYERCRELVEA---GYDVRQPDKENVTLLHWAAINNRIDLVKYYISK--GAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp GGGCCHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTTBCHHHH
T ss_pred ccchHHHHHHHcCChHHHHHHHHc---CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc--CCcchhhcCCcCCChhHH
Confidence 333334445555555544444331 111123466677777777777776666655552 222222333445555655
Q ss_pred HHHhhCHHHHHHHHHHhhhhHhHHhhcccCChhhhHhhhcCChhHHHHHHH
Q 004342 529 ALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS 579 (760)
Q Consensus 529 lLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNhVLQklLe~~~~e~~~~Ii~ 579 (760)
+......+....|++. ....-..+..|...+...+.....+..+.+++
T Consensus 83 A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKY---GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130 (240)
T ss_dssp HHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHh
Confidence 5555544433333221 00111235566666666666655555555544
No 34
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.61 E-value=3e+02 Score=25.74 Aligned_cols=188 Identities=13% Similarity=0.053 Sum_probs=101.6
Q ss_pred ccCcccchhhhhhhccCCHHHHHHHHHHHhhc-cccccccccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCC
Q 004342 481 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQ-VLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGN 559 (760)
Q Consensus 481 ~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~-v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GN 559 (760)
.+|..|.-.+.....++..+..+.+++.+... ..--..+..|.-.+..+......+....|++. + ...-..+..|.
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g-~~~~~~~~~g~ 80 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA--G-ASPMALDRHGQ 80 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--T-CCTTCCCTTSC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc--C-CCccccCCCCC
Confidence 45788999999999999999888888865432 22234567787788878777766544444431 1 11123477788
Q ss_pred hhhhHhhhcCChhHHHHHHHHhhhhHhh-hccCCcchhHHHHHHhhCCChHHHHHHHHHHHHHHHHH-hhc-ccchHHHH
Q 004342 560 HVIQKCIECVPAEKIEFIISAFRGQVAT-LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFAL-AQD-QYGNYVTQ 636 (760)
Q Consensus 560 hVLQklLe~~~~e~~~~Ii~~L~~~i~~-Ls~hkyGS~VLQklLe~~~~~~q~~~Il~eL~~~l~~L-a~D-q~GNyVVQ 636 (760)
..+...+.....+..+.+++........ -..+..|...+........ . .+++.+++.-..+ ..+ ..|...+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~----~~~~~Ll~~g~~~~~~~~~~g~t~L~ 155 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-Q----ETVQLLLERGADIDAVDIKSGRSPLI 155 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-H----HHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-H----HHHHHHHHcCCCcccccccCCCcHHH
Confidence 8888888887777777777654321111 1234455555555554432 1 2333333321111 122 45666666
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHH-hcCccHHHHHHHHHHhCCH
Q 004342 637 HVLERGKSYERTQILSKLAGKIVQM-SQHKYASNVVEKCLEYGDT 680 (760)
Q Consensus 637 ~LLe~~~~k~R~~Iie~L~~~l~~L-s~~K~GS~VVEk~L~~a~~ 680 (760)
.....+.. ++++.|..+=..+ ..+..|.-.+..+...+..
T Consensus 156 ~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 196 (241)
T 1k1a_A 156 HAVENNSL----SMVQLLLQHGANVNAQMYSGSSALHSASGRGLL 196 (241)
T ss_dssp HHHHTTCH----HHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH
T ss_pred HHHHcCCH----HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 66655443 3333333321111 2344555555555555543
No 35
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=30.13 E-value=2.1e+02 Score=26.31 Aligned_cols=43 Identities=26% Similarity=0.215 Sum_probs=32.3
Q ss_pred HhhCCHHHHHHHHHHHHHhHHHHhhCCChHHHHHHHHHHHhcC
Q 004342 717 LEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLYGEG 759 (760)
Q Consensus 717 L~~~dd~~rk~Il~~Lk~~l~~L~~~~yGk~Vv~kLekl~~~g 759 (760)
+...+..++++|++.|..=-.+.+.++.-..|.+.-..|...|
T Consensus 94 ~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G 136 (140)
T 3ldz_A 94 LNKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQG 136 (140)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHHHHTT
T ss_pred hccCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHcc
Confidence 3446778999999988877777777776667777777777666
No 36
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=26.57 E-value=1e+03 Score=30.01 Aligned_cols=64 Identities=6% Similarity=0.008 Sum_probs=34.7
Q ss_pred hhHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004342 595 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 659 (760)
Q Consensus 595 S~VLQklLe~~~~~~q~~~Il~eL~~~l~~La~Dq~GNyVVQ~LLe~~~~k~R~~Iie~L~~~l~ 659 (760)
-.|++.+-...-+++....+.+.+++.+.. +....=-.+|.-+|+..++..-.++++.|++++.
T Consensus 209 ~~iLdaLs~L~Ls~~~l~~vr~~vl~~L~s-~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~ 272 (1323)
T 3s4w_B 209 VPILDVFSSLRLDPNFLSKIRQLVMGKLSS-VRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLN 272 (1323)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHSTTS-SCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcC
Confidence 334444444433444444444444433322 1222234567777777777777888888887663
No 37
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=26.17 E-value=4.9e+02 Score=25.75 Aligned_cols=128 Identities=13% Similarity=0.179 Sum_probs=61.5
Q ss_pred CcchhHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhc-------ccchHHHHHHHh---cCChhhHHHHHHHHHHHHHHH
Q 004342 592 PYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQD-------QYGNYVTQHVLE---RGKSYERTQILSKLAGKIVQM 661 (760)
Q Consensus 592 kyGS~VLQklLe~~~~~~q~~~Il~eL~~~l~~La~D-------q~GNyVVQ~LLe---~~~~k~R~~Iie~L~~~l~~L 661 (760)
+|...++-.+|+...+.. ..+.+.....+..++.. .|-..++..+++ +.++..|...+..|...+...
T Consensus 100 ~y~~~llp~ll~~l~dkk--~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKK--PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHGGGCCC--HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 455566777777655432 22323333333333321 113345555554 334556666666655444322
Q ss_pred hc--C-------ccHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCcHHHHHhhcCCChhHHHHHHHhhCCHHHHHHHHHHH
Q 004342 662 SQ--H-------KYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRI 732 (760)
Q Consensus 662 s~--~-------K~GS~VVEk~L~~a~~keRk~II~eLl~~~~~ke~L~~La~DqyGnyVIQklL~~~dd~~rk~Il~~L 732 (760)
-. . +-=-.++.++++..+++.|+.-++.|- .+ ..-.|+-.+...+...|+..+++|-+.+
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~-------~i----~~~vG~~~~~p~l~~Ld~~k~~ki~~~~ 246 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA-------IL----IKIFGMNTFVKTLEHLDNLKRKKIEETV 246 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH-------HH----HHHHCSGGGHHHHHHSCHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------HH----HHHhCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 0 112223455555566666666555552 12 1233444566666666776666665443
No 38
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.01 E-value=2.4e+02 Score=26.98 Aligned_cols=190 Identities=15% Similarity=0.061 Sum_probs=93.6
Q ss_pred ccchhhhhhhccCCHHHHHHHHHHHhhccccc-----cccccccHHHHHHHHh---hCHHHHHHHHHHh-hhh-HhHH--
Q 004342 485 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPL-----SLQMYGCRVIQKALEV---IELHQKSQLVLEL-DGH-VMRC-- 552 (760)
Q Consensus 485 yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~L-----s~h~yGSrVIQklLe~---as~eqr~~Lv~EL-~g~-i~~L-- 552 (760)
||.-.+......+..+..+.|++.+..+-..+ ..+..|.-.|..+... ...+....|++.- ... ...+
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 34444555556666665555665543322222 2577888777777766 4443333333210 000 0000
Q ss_pred ----hhcccCChhhhHhhhcCChhHHHHHHHHhhhhHhhhccC------------CcchhHHHHHHhhCCChHHHHHHHH
Q 004342 553 ----VRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTH------------PYGCRVIQRVLEHCSDEQQGQCIVD 616 (760)
Q Consensus 553 ----~kDq~GNhVLQklLe~~~~e~~~~Ii~~L~~~i~~Ls~h------------kyGS~VLQklLe~~~~~~q~~~Il~ 616 (760)
.+|..|...+...+.....+..+.+++.=. .+ ..... .+|.-.|........ . .+++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~-~----~~v~ 153 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA-DV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQ-W----DVVT 153 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC-CT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC-H----HHHH
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCC-CC-CcccccccccccccccccCCCCHHHHHHHcCC-H----HHHH
Confidence 123568888888888777776666665411 11 11111 136555555554432 2 2444
Q ss_pred HHHH---H-HHHHhhcccchHHHHHHHhc--CChhh---HHHHHHHHHHHHHHH--------hcCccHHHHHHHHHHhCC
Q 004342 617 EILE---S-AFALAQDQYGNYVTQHVLER--GKSYE---RTQILSKLAGKIVQM--------SQHKYASNVVEKCLEYGD 679 (760)
Q Consensus 617 eL~~---~-l~~La~Dq~GNyVVQ~LLe~--~~~k~---R~~Iie~L~~~l~~L--------s~~K~GS~VVEk~L~~a~ 679 (760)
.|++ . ...-+.|..|.-.+...... ...+. ...+++.|..+=..+ ..+..|.-.+..+...+.
T Consensus 154 ~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 233 (256)
T 2etb_A 154 YLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233 (256)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence 4443 1 11124567788777777763 22221 122555555544433 345556555555555554
Q ss_pred HH
Q 004342 680 TA 681 (760)
Q Consensus 680 ~k 681 (760)
.+
T Consensus 234 ~~ 235 (256)
T 2etb_A 234 IE 235 (256)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 39
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=26.00 E-value=4.8e+02 Score=25.68 Aligned_cols=123 Identities=9% Similarity=-0.026 Sum_probs=63.6
Q ss_pred CcCHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCcccchhhhhhhccCCHHHHHHHHHHHhhccccccccccccHHHHH
Q 004342 449 HGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 528 (760)
Q Consensus 449 ~gSRvIQ~lLe~~s~Eqr~~If~EL~p~~~eL~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQk 528 (760)
++...|-...+.++.+....++.+. ...--..|.+|.-.+.....++..+..+.|++. | ..--..+..|...+..
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g-~~~~~~~~~g~t~L~~ 97 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPL--NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH--G-ADVHAKDKGGLVPLHN 97 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTT--TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT--T-CCTTCCCTTCCCHHHH
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhc--CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc--C-CCCCccCCCCCcHHHH
Confidence 3333444455555555444443321 112224567777777777777777666666553 1 1112345566666666
Q ss_pred HHHhhCHHHHHHHHHHhhhhHhHHhhcccCChhhhHhhhcCChhHHHHHHH
Q 004342 529 ALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS 579 (760)
Q Consensus 529 lLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNhVLQklLe~~~~e~~~~Ii~ 579 (760)
+......+....|++. + ...-..+.+|...+...+.....+..+.+++
T Consensus 98 A~~~g~~~iv~~Ll~~--g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 98 ACSYGHYEVTELLLKH--G-ACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp HHHTTCHHHHHHHHHT--T-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHC--C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 6666554433333321 0 1111245566666666666666555555554
No 40
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=25.75 E-value=4e+02 Score=24.59 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=64.7
Q ss_pred CCCcCHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCcccchhhhhhhccCCHHHHHHHHHHHhhccccccccccccHHH
Q 004342 447 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVI 526 (760)
Q Consensus 447 dq~gSRvIQ~lLe~~s~Eqr~~If~EL~p~~~eL~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVI 526 (760)
|..|.-.|......+..+..+.+++. ....-..+..|...+...+..+..+..+.|++.-. ...-..+..|...+
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~g~t~L 96 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEA---SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA--TDLDARMHDGTTPL 96 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT--SCTTCCCTTCCCHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCcHH
Confidence 34454555555556655544444332 11122456777777777777777766666655221 11223355666666
Q ss_pred HHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCChhhhHhhhcCChhHHHHHHH
Q 004342 527 QKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS 579 (760)
Q Consensus 527 QklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNhVLQklLe~~~~e~~~~Ii~ 579 (760)
..+......+....|++. ....-..+..|...+...+.....+..+.+++
T Consensus 97 ~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 146 (223)
T 2f8y_A 97 ILAARLAVEGMLEDLINS---HADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146 (223)
T ss_dssp HHHHHHTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHc---CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 666655554433333321 01112345667777777766666555555554
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.31 E-value=4.2e+02 Score=24.68 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=34.4
Q ss_pred ccCcccchhhhhhhccCCHHHHHHHHHHHhhccc--cccccccccHHHHHHHHhhCHHHHHHHH
Q 004342 481 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVL--PLSLQMYGCRVIQKALEVIELHQKSQLV 542 (760)
Q Consensus 481 ~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~--~Ls~h~yGSrVIQklLe~as~eqr~~Lv 542 (760)
.+|..|.-.+......+..+..+.|++.-..-.. .-..+..|...+..+......+....|+
T Consensus 32 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 95 (232)
T 2rfa_A 32 QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALL 95 (232)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHH
Confidence 3467777777777777777666666654221111 1234456666666666655544333333
No 42
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.01 E-value=2.1e+02 Score=27.46 Aligned_cols=196 Identities=18% Similarity=0.123 Sum_probs=104.2
Q ss_pred CcccchhhhhhhccCCHHHHHHHHHHHhhccccc-----cccccccHHHHHHH---HhhCHHHHHHHHHHh--hhhHhHH
Q 004342 483 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPL-----SLQMYGCRVIQKAL---EVIELHQKSQLVLEL--DGHVMRC 552 (760)
Q Consensus 483 D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~L-----s~h~yGSrVIQklL---e~as~eqr~~Lv~EL--~g~i~~L 552 (760)
+.|+...+-..++.+..+..+.|++.+..+-..+ ..+..|.-.|..+. +....+....|++.- ...+..+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 4567777777777777777777777554422222 22355776666665 333333333333211 0111111
Q ss_pred ------hhcccCChhhhHhhhcCChhHHHHHHHHhhhhHhhhc-cC--------------CcchhHHHHHHhhCCChHHH
Q 004342 553 ------VRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS-TH--------------PYGCRVIQRVLEHCSDEQQG 611 (760)
Q Consensus 553 ------~kDq~GNhVLQklLe~~~~e~~~~Ii~~L~~~i~~Ls-~h--------------kyGS~VLQklLe~~~~~~q~ 611 (760)
..|..|...+...+.....+..+.+++.= .++- .+ .+|.-.|........ .
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~-~--- 153 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG----ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ-P--- 153 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC-H---
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCC----CCcCccccccccCcccccccccCCCCHHHHHHHcCC-H---
Confidence 12347888888888877777666666531 1111 11 356555555554432 2
Q ss_pred HHHHHHHHH---H-HHHHhhcccchHHHHHHHhcCChh-----hHHHHHHHHHHHHHHH--------hcCccHHHHHHHH
Q 004342 612 QCIVDEILE---S-AFALAQDQYGNYVTQHVLERGKSY-----ERTQILSKLAGKIVQM--------SQHKYASNVVEKC 674 (760)
Q Consensus 612 ~~Il~eL~~---~-l~~La~Dq~GNyVVQ~LLe~~~~k-----~R~~Iie~L~~~l~~L--------s~~K~GS~VVEk~ 674 (760)
.+++.|++ . ...-+.|..|.-.+......+... ...++++.|..+=..+ ..++.|.-.+..+
T Consensus 154 -~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A 232 (260)
T 3jxi_A 154 -HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232 (260)
T ss_dssp -HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred -HHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHH
Confidence 24444444 1 111245778888888777655421 1235666666655554 4667777777766
Q ss_pred HHhCCHHHHHHHH
Q 004342 675 LEYGDTAERELLI 687 (760)
Q Consensus 675 L~~a~~keRk~II 687 (760)
...+..+..+.|+
T Consensus 233 ~~~g~~~~v~~Ll 245 (260)
T 3jxi_A 233 AKTGKIGIFQHII 245 (260)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 6666544433333
No 43
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=24.58 E-value=4.8e+02 Score=26.91 Aligned_cols=166 Identities=17% Similarity=0.171 Sum_probs=85.1
Q ss_pred hhhhhhccCCHHHHHHHHHHHhhccccccccccccHHHHHHHHhh---CHHHHHHHHH-HhhhhHhHHhhcccCChhhhH
Q 004342 489 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI---ELHQKSQLVL-ELDGHVMRCVRDQNGNHVIQK 564 (760)
Q Consensus 489 VIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~a---s~eqr~~Lv~-EL~g~i~~L~kDq~GNhVLQk 564 (760)
.+-+++.-|++.|.+.+-+.+.=. .+.-... ..+.+.++... +-..-..+++ -+.+++..| ..-++.++..
T Consensus 39 ~~l~~L~~~sp~q~e~lc~~L~l~--~lsd~~l-~~lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L--~~~ASR~L~s 113 (264)
T 2ilr_A 39 VELQLLHECSPSQMDLLCAQLQLP--QLSDLGL-LRLCTWLLALSPDLSLSNATVLTRSLFLGRILSL--TSSASRLLTT 113 (264)
T ss_dssp HHHHGGGGCCHHHHHHHHHHHTGG--GCCHHHH-HHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHC--SSCCCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc--cCCHHHH-HHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHhc--cCcchhHHHH
Confidence 556677779999999988876321 2211111 12333344321 2333334444 345666666 4445555444
Q ss_pred hhhcCChhHHHHHHHHh-hhhHhhhccCCcchhHHHHHHh-hCCChHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhcC
Q 004342 565 CIECVPAEKIEFIISAF-RGQVATLSTHPYGCRVIQRVLE-HCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERG 642 (760)
Q Consensus 565 lLe~~~~e~~~~Ii~~L-~~~i~~Ls~hkyGS~VLQklLe-~~~~~~q~~~Il~eL~~~l~~La~Dq~GNyVVQ~LLe~~ 642 (760)
++..+-...-..+++.+ ..-+..-...+.=+.+|-++++ .+-+++.+..++..+. .+.-+..---|+|.+++..
T Consensus 114 al~~f~k~~p~a~~~all~PLL~~~~~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL----~l~WtE~~~~Vlq~lL~~k 189 (264)
T 2ilr_A 114 ALTSFAAKYTYPVCSALLDPVLQAPGTGPAQTELLCCLVKMESLEPDAQVLMLGQIL----ELPWKEETFLVLQSLLERQ 189 (264)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH----HSCCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHH----hccchHHHHHHHHHHHhcC
Confidence 44322233333333332 2333333444455678888888 6767776666666664 3444555566889999865
Q ss_pred Ch---hhHHHHHHHHHHHHHHHhc
Q 004342 643 KS---YERTQILSKLAGKIVQMSQ 663 (760)
Q Consensus 643 ~~---k~R~~Iie~L~~~l~~Ls~ 663 (760)
.+ +.-+.++..|.+.-..++.
T Consensus 190 ~~L~~~~i~~Lv~~L~~~a~~~sk 213 (264)
T 2ilr_A 190 VEMTPEKFSVLMEKLCKKGLAATT 213 (264)
T ss_dssp CCCCHHHHHHHHHHHHC-----CC
T ss_pred CCCCHHHHHHHHHHHHHHhHHhhc
Confidence 42 3344444444443333333
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.40 E-value=4e+02 Score=24.12 Aligned_cols=118 Identities=9% Similarity=0.004 Sum_probs=59.2
Q ss_pred ccCcccchhhhhhhccCCHHHHHHHHHHHhhccccccccccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCCh
Q 004342 481 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH 560 (760)
Q Consensus 481 ~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNh 560 (760)
..|..|...+......+..+..+.+++. | ..--..+..|...+..+......+....+++.-. ...-..+.+|..
T Consensus 34 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~--~~~~~~~~~g~t 108 (201)
T 3hra_A 34 EVDTEGNTPLNIAVHNNDIEIAKALIDR--G-ADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT--PDLNKHNRYGGN 108 (201)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHT--T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC--CCTTCCCTTSCC
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHc--C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccC--cccccccCCCCc
Confidence 3466777777777777776666665553 1 1112244556666666666555544444432211 111234556666
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhHhhhccCCcchhHHHHHHhhC
Q 004342 561 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHC 605 (760)
Q Consensus 561 VLQklLe~~~~e~~~~Ii~~L~~~i~~Ls~hkyGS~VLQklLe~~ 605 (760)
.+...+.....+..+.+++.-.. .--..+..|...+.......
T Consensus 109 ~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~g~t~L~~A~~~~ 151 (201)
T 3hra_A 109 ALIPAAEKGHIDNVKLLLEDGRE--DIDFQNDFGYTALIEAVGLR 151 (201)
T ss_dssp SHHHHHHTTCHHHHHHHHHHCCC--CTTCCCTTSCCHHHHHHHSS
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC--CcCCCCCCCCCHHHHHHHhc
Confidence 66666666665555555543211 11123444555555544443
No 45
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.85 E-value=3e+02 Score=26.63 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=101.0
Q ss_pred cCcccchhhhhhhccCCHHHHHHHHHHHhhccccc-----cccccccHHHHHHHHh---hCHHHHHHHHHHhh--hhHhH
Q 004342 482 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPL-----SLQMYGCRVIQKALEV---IELHQKSQLVLELD--GHVMR 551 (760)
Q Consensus 482 ~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~L-----s~h~yGSrVIQklLe~---as~eqr~~Lv~EL~--g~i~~ 551 (760)
.|.+|.-.+......+..+..+.|++.+...-..+ ..+..|.-.|..+... ...+....|++.-. +.+..
T Consensus 9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 46667777777777777777777776554332222 3466777777666654 33333333332100 00111
Q ss_pred Hh------hcccCChhhhHhhhcCChhHHHHHHHHhhhhHhhhccC-------------CcchhHHHHHHhhCCChHHHH
Q 004342 552 CV------RDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTH-------------PYGCRVIQRVLEHCSDEQQGQ 612 (760)
Q Consensus 552 L~------kDq~GNhVLQklLe~~~~e~~~~Ii~~L~~~i~~Ls~h-------------kyGS~VLQklLe~~~~~~q~~ 612 (760)
++ .|.+|...+...+.....+..+.+++.= ..+ ..... .+|.-.|........ .
T Consensus 89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-a~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~-~---- 161 (273)
T 2pnn_A 89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG-ADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ-L---- 161 (273)
T ss_dssp HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC-H----
T ss_pred HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCC-CCc-CccccccccccccccccccCCCCHHHHHHHcCC-H----
Confidence 11 3457888888888877777766666641 111 11111 145555555554432 2
Q ss_pred HHHHHHHH---H-HHHHhhcccchHHHHHHHhcCChh--h---HHHHHHHHHHHHHHH--------hcCccHHHHHHHHH
Q 004342 613 CIVDEILE---S-AFALAQDQYGNYVTQHVLERGKSY--E---RTQILSKLAGKIVQM--------SQHKYASNVVEKCL 675 (760)
Q Consensus 613 ~Il~eL~~---~-l~~La~Dq~GNyVVQ~LLe~~~~k--~---R~~Iie~L~~~l~~L--------s~~K~GS~VVEk~L 675 (760)
.+++.|++ . ...-+.|..|...+......+... . ..++++.|..+-..+ ..++.|.-.+..+.
T Consensus 162 ~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~ 241 (273)
T 2pnn_A 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241 (273)
T ss_dssp HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHH
Confidence 24444444 1 111245778888888777765421 1 134555665554444 35666766666666
Q ss_pred HhCCHH
Q 004342 676 EYGDTA 681 (760)
Q Consensus 676 ~~a~~k 681 (760)
..+..+
T Consensus 242 ~~g~~~ 247 (273)
T 2pnn_A 242 SSGKIG 247 (273)
T ss_dssp HTTCHH
T ss_pred HhChHH
Confidence 665543
No 46
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=22.89 E-value=5.6e+02 Score=25.34 Aligned_cols=117 Identities=13% Similarity=0.230 Sum_probs=65.6
Q ss_pred chHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHh-----CCHHHHHHHHHHHhcCCCCcHHHHHhhc
Q 004342 631 GNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEY-----GDTAERELLIEEILGQSEENDNLLVMMK 705 (760)
Q Consensus 631 GNyVVQ~LLe~~~~k~R~~Iie~L~~~l~~Ls~~K~GS~VVEk~L~~-----a~~keRk~II~eLl~~~~~ke~L~~La~ 705 (760)
|-..+-.+|...+....+.|++.|...=.++ +..|-..+|.+ .++.....|++++ + ...+.+|.
T Consensus 86 G~~~~A~IlN~~~~~~e~~il~~L~~~d~el-----a~~I~~~mF~Fedl~~ld~~~iq~llr~v----~--~~~L~~AL 154 (216)
T 4fhr_B 86 GIDTAAEIMNNLDRTTEKKIMDKLVQENPEL-----ADEIRRRMFVFEDILKLDDRSIQLVLREV----D--TRDLALAL 154 (216)
T ss_dssp SHHHHHHHHHHSCHHHHHHHHHHHHHHCHHH-----HHHHHHHHSCGGGGGGSCHHHHHHHHTTS----C--HHHHHHHH
T ss_pred cHHHHHHHHHcCChhHHHHHHHHHHhcCHHH-----HHHHHHHhcCHHHHhCCCHHHHHHHHHhC----C--HHHHHHHH
Confidence 5566777888888777788888887644433 33444555554 3344444444443 1 22233343
Q ss_pred CCChhHHHHHHHhhCCHHHHHHHHHHHHHh----HHHHhhCCChHHHHHHHHHHHhcCC
Q 004342 706 DQYANYVVQKILEKCNEKLRETLISRIRVH----CDALKKYTYGKHIVARFEQLYGEGA 760 (760)
Q Consensus 706 DqyGnyVIQklL~~~dd~~rk~Il~~Lk~~----l~~L~~~~yGk~Vv~kLekl~~~g~ 760 (760)
--...-+.+++|.+-+...++.|.+++... +.+.. .-=+.|+..+-++.++|.
T Consensus 155 Kga~~e~~e~il~nmS~Raa~~l~ee~e~~gpvr~~dVe--~Aq~~Iv~~~r~L~~~Ge 211 (216)
T 4fhr_B 155 KGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVE--EAQQKIINIIRRLEEAGE 211 (216)
T ss_dssp TTSCHHHHHHHHTTSCHHHHHHHHHHHHHCCCCCHHHHH--HHHHHHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHHHHHHHCCC
Confidence 334445667777777766666666655421 11111 112458888888888773
No 47
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=22.46 E-value=4.6e+02 Score=24.16 Aligned_cols=97 Identities=14% Similarity=-0.024 Sum_probs=47.3
Q ss_pred cCcccchhhhhhhccCCHHHHHHHHHHHhhccccccccccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCChh
Q 004342 482 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHV 561 (760)
Q Consensus 482 ~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNhV 561 (760)
.|..|...+......+..+..+.+++.-..--.....+..|...+..+......+....+++.- .....-..+..|...
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~g~t~ 110 (228)
T 2dzn_A 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP-LKPDLNKITNQGVTC 110 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSS-SCCCTTCCCTTCCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCcccccCCcCCCCH
Confidence 6777777777777777766665555532111111124556666666666555433222222110 001112234556666
Q ss_pred hhHhhhcCChhHHHHHHH
Q 004342 562 IQKCIECVPAEKIEFIIS 579 (760)
Q Consensus 562 LQklLe~~~~e~~~~Ii~ 579 (760)
+...+.....+..+.+++
T Consensus 111 L~~A~~~~~~~~~~~Ll~ 128 (228)
T 2dzn_A 111 LHLAVGKKWFEVSQFLIE 128 (228)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHhHHHHHHH
Confidence 655555555444444443
No 48
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.72 E-value=2.6e+02 Score=26.01 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=38.2
Q ss_pred cchhhhhhhccCCHHHHHHHHHHHhhccccccccccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCChhhhHh
Q 004342 486 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKC 565 (760)
Q Consensus 486 GnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNhVLQkl 565 (760)
|+..+......+..+..+.+++.-. -.....+..|...+..+......+....+++.-...-.....+..|...+...
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKP--SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCG--GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCc--cccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 4455555556666655555554321 11122456666666666655544433333322100111111445555555555
Q ss_pred hhcCChhH
Q 004342 566 IECVPAEK 573 (760)
Q Consensus 566 Le~~~~e~ 573 (760)
+.....+.
T Consensus 80 ~~~~~~~~ 87 (228)
T 2dzn_A 80 CSVGNLEV 87 (228)
T ss_dssp HHHCCHHH
T ss_pred HHcCCHHH
Confidence 55444333
No 49
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=21.54 E-value=1.4e+02 Score=33.10 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=20.0
Q ss_pred hhhcCCHHHHHHHHHHHhhchhhhccCcccchhhhhhhccCCHHHHHHHHHHH
Q 004342 457 KLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKL 509 (760)
Q Consensus 457 lLe~~s~Eqr~~If~EL~p~~~eL~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L 509 (760)
+|+..+.+++..+|+++.+.. ...+|+..+++.+..|++.+
T Consensus 59 ll~~L~~~~~~~v~~~L~~~~------------~~evl~~l~~~~~~~ll~~l 99 (473)
T 2zy9_A 59 LWDELKGEHRYVVLTLLPKAK------------AAEVLSHLSPEEQAEYLKTL 99 (473)
T ss_dssp GGGGSCHHHHHHHHHHSCHHH------------HHHHTTSSCHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHhCCHHH------------HHHHHHcCCHHHHHHHHHcC
Confidence 444445555555554443332 23455555555555555544
No 50
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.54 E-value=2.3e+02 Score=26.64 Aligned_cols=229 Identities=11% Similarity=-0.010 Sum_probs=0.0
Q ss_pred ccCcccchhhhhhhccCCHHHHHHHHHHHhhccccccccccccHHHHHHHHhhCHHHHHHHHHHhhhhHhHHhhcccCCh
Q 004342 481 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH 560 (760)
Q Consensus 481 ~~D~yGnhVIQKLLe~~s~eqr~~Ii~~L~g~v~~Ls~h~yGSrVIQklLe~as~eqr~~Lv~EL~g~i~~L~kDq~GNh 560 (760)
++|..|.-.+......+..+..+.+++. ...--..+..|...+..++.....+....|++. ....-..+..|..
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t 79 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQA---GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA---GALVDPKDAEGST 79 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCCCCCCTTSCC
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHc---CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC---CCCCCCCCCCCCc
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhHhhhccCCcchhHHHHHHhhCCChHHHHHHHHHHHHHHHHHh-hcccchHHHHHHH
Q 004342 561 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALA-QDQYGNYVTQHVL 639 (760)
Q Consensus 561 VLQklLe~~~~e~~~~Ii~~L~~~i~~Ls~hkyGS~VLQklLe~~~~~~q~~~Il~eL~~~l~~La-~Dq~GNyVVQ~LL 639 (760)
.+...+.....+..+.+++.-...+. ..+..|...+........ ..+++.+++.-..+- .+..|...+....
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 152 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVN--CQDDGGWTPMIWATEYKH-----VDLVKLLLSKGSDINIRDNEENICLHWAA 152 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTT--CCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcc--cCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCccCCCCCCHHHHHH
Q ss_pred hcCChhhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCcHHHHHhhcCCChhHHHHHHHhh
Q 004342 640 ERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEK 719 (760)
Q Consensus 640 e~~~~k~R~~Iie~L~~~l~~Ls~~K~GS~VVEk~L~~a~~keRk~II~eLl~~~~~ke~L~~La~DqyGnyVIQklL~~ 719 (760)
..+..+..+.+++. ...--..+..|.-.+..+...+..+..+.+++.=..... .|..|.-.+..+...
T Consensus 153 ~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~---------~d~~g~t~l~~A~~~ 220 (237)
T 3b7b_A 153 FSGCVDIAEILLAA---KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL---------KNKEGETPLQCASLN 220 (237)
T ss_dssp HHCCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC---------CCTTSCCHHHHSCTT
T ss_pred HCCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc---------cCCCCCCHHHHHHHH
Q ss_pred CCHHHHHHHHHHHHH
Q 004342 720 CNEKLRETLISRIRV 734 (760)
Q Consensus 720 ~dd~~rk~Il~~Lk~ 734 (760)
........+++.|..
T Consensus 221 ~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 221 SQVWSALQMSKALQD 235 (237)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
No 51
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=21.35 E-value=4.1e+02 Score=25.05 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCHHHHHHHH-HHHhcCCCCcHHHHHhhcCCChhHHHHHHHhhCCHHHHHHHHHHHHHhHHHHhhCCChHH
Q 004342 669 NVVEKCLEYGDTAERELLI-EEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKH 747 (760)
Q Consensus 669 ~VVEk~L~~a~~keRk~II-~eLl~~~~~ke~L~~La~DqyGnyVIQklL~~~dd~~rk~Il~~Lk~~l~~L~~~~yGk~ 747 (760)
.+++.|+..|.......|. ++++ +.|..++.. ..+..++++|++.|..=-.....++.-..
T Consensus 74 ~LLd~~vkNcG~~Fh~evas~~Fl------~el~~l~~~------------~~~~~Vk~kil~li~~W~~~f~~~~~l~~ 135 (163)
T 1x5b_A 74 TLLGACVANCGKIFHLEVCSRDFA------TEVRAVIKN------------KAHPKVCEKLKSLMVEWSEEFQKDPQFSL 135 (163)
T ss_dssp HHHHHHHHHTCHHHHHHHTSHHHH------HHHHHHHHT------------TCCHHHHHHHHHHHHHHHHHTTTCSTTHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHH------HHHHHHHcc------------CCCHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5778888888776664333 2332 123333332 14567888888877766666666665566
Q ss_pred HHHHHHHHHhcC
Q 004342 748 IVARFEQLYGEG 759 (760)
Q Consensus 748 Vv~kLekl~~~g 759 (760)
|.+.-+.|...|
T Consensus 136 i~~~Y~~Lk~~G 147 (163)
T 1x5b_A 136 ISATIKSMKEEG 147 (163)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHcC
Confidence 666666666555
No 52
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=20.46 E-value=9.7e+02 Score=27.16 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhHHHHh-----hCCChHHHHHHHHHHHh
Q 004342 724 LRETLISRIRVHCDALK-----KYTYGKHIVARFEQLYG 757 (760)
Q Consensus 724 ~rk~Il~~Lk~~l~~L~-----~~~yGk~Vv~kLekl~~ 757 (760)
.|+.+++.+...+..+. -.+|-..|+..+.++..
T Consensus 750 vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~ 788 (861)
T 2bpt_A 750 VLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAE 788 (861)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHc
Confidence 46666666666555543 23455667766666654
No 53
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=20.22 E-value=2.6e+02 Score=28.57 Aligned_cols=50 Identities=8% Similarity=0.162 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCcHHHHHhhcCCChhHHHHHHHhh
Q 004342 669 NVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEK 719 (760)
Q Consensus 669 ~VVEk~L~~a~~keRk~II~eLl~~~~~ke~L~~La~DqyGnyVIQklL~~ 719 (760)
..+.+|+...+-.+.-.++..++... ++..+..++++++|--+|..+|+.
T Consensus 127 ~~~~~~I~~~~l~~l~~~l~~Ll~~~-~~~~l~~v~~~k~GlSlLt~LLsR 176 (248)
T 2xes_A 127 SPFSLLLYHLPSVSITSLLRQLMNLP-GSPHLTAVLQNKFGLSLLLILLSR 176 (248)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHTSST-TTTCCHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CCccceeeeecCchHHHHHHHHHH
Confidence 36677777788777777788886542 244688899999999999888875
No 54
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=20.18 E-value=1.1e+03 Score=27.86 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCcCH-HHHHhhhcCCHHHHHHHHHHHhhchhhhccCcccc
Q 004342 437 IAGRIVEFSVDQHGSR-FIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGN 487 (760)
Q Consensus 437 I~GkvveLa~dq~gSR-vIQ~lLe~~s~Eqr~~If~EL~p~~~eL~~D~yGn 487 (760)
|.--+.....||..|| .+.+++.. +....-.+|+.+......+..+.|++
T Consensus 76 ~e~~l~~~~q~~~~s~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~ 126 (778)
T 3opb_A 76 IEEILTRSYQDHSESRVHLSKLIQN-DIPFALNLFEILSRSSIHVFVGCFSN 126 (778)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH-THHHHHHHHHTSCGGGHHHHHTTCCS
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHh-ChHHHHHHHHhccCCceEeecccCCC
Confidence 4444456677888884 44444433 34445556666665555555555544
Done!