BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004343
         (760 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OQL|A Chain A, Mistletoe Lectin I From Viscum Album Complexed With
           Galactose
          Length = 249

 Score = 32.7 bits (73), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 9/65 (13%)

Query: 450 VPVGLSQMI---YATRFPPIACPTQCSTRLVTHQSISESAQAAPSVNQATQIYPVQPQVQ 506
           +P+G+ Q+I    A RFP  +  TQ  + L+  Q ISE+A+  P + +A Q       + 
Sbjct: 128 IPLGIDQLIQSVTALRFPGGSTRTQARSILILIQMISEAARFNPILWRARQ------YIN 181

Query: 507 AAASF 511
           + ASF
Sbjct: 182 SGASF 186


>pdb|2RG9|A Chain A, Crystal Structure Of Viscum Album Mistletoe Lectin I In
           Native State At 1.95 A Resolution, Comparison Of
           Structure Active Site Conformation In Ricin And In
           Viscumin
          Length = 249

 Score = 32.7 bits (73), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 9/65 (13%)

Query: 450 VPVGLSQMI---YATRFPPIACPTQCSTRLVTHQSISESAQAAPSVNQATQIYPVQPQVQ 506
           +P+G+ Q+I    A RFP  +  TQ  + L+  Q ISE+A+  P + +A Q       + 
Sbjct: 128 IPLGIDQLIQSVTALRFPGGSTRTQARSILILIQMISEAARFNPILWRARQ------YIN 181

Query: 507 AAASF 511
           + ASF
Sbjct: 182 SGASF 186


>pdb|3O5W|A Chain A, Binding Of Kinetin In The Active Site Of Mistletoe Lectin
           I
          Length = 254

 Score = 32.7 bits (73), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 9/65 (13%)

Query: 450 VPVGLSQMI---YATRFPPIACPTQCSTRLVTHQSISESAQAAPSVNQATQIYPVQPQVQ 506
           +P+G+ Q+I    A RFP  +  TQ  + L+  Q ISE+A+  P + +A Q       + 
Sbjct: 128 IPLGIDQLIQSVTALRFPGGSTRTQARSILILIQMISEAARFNPILWRARQ------YIN 181

Query: 507 AAASF 511
           + ASF
Sbjct: 182 SGASF 186


>pdb|1PUM|A Chain A, Mistletoe Lectin I In Complex With Galactose
          Length = 249

 Score = 32.3 bits (72), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 450 VPVGLSQMI---YATRFPPIACPTQCSTRLVTHQSISESAQAAPSVNQATQ 497
           +P+G+ Q+I    A RFP  +  TQ  + L+  Q ISE+A+  P + +A Q
Sbjct: 128 IPLGIDQLIASVTALRFPGGSTRTQARSILILIQMISEAARFNPILWRARQ 178


>pdb|1PUU|A Chain A, Mistletoe Lectin I In Complex With Lactose
 pdb|1SZ6|A Chain A, Mistletoe Lectin I From Viscum Album. Crystal Structure At
           2.05 A Resolution
          Length = 249

 Score = 32.3 bits (72), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 450 VPVGLSQMI---YATRFPPIACPTQCSTRLVTHQSISESAQAAPSVNQATQ 497
           +P+G+ Q+I    A RFP  +  TQ  + L+  Q ISE+A+  P + +A Q
Sbjct: 128 IPLGIDQLIASVTALRFPGGSTRTQARSILILIQMISEAARFNPILWRARQ 178


>pdb|3D7W|A Chain A, Mistletoe Lectin I In Complex With Zeatin
          Length = 254

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 450 VPVGLSQMI---YATRFPPIACPTQCSTRLVTHQSISESAQAAPSVNQATQ 497
           +P+G+ Q+I    A RFP     TQ  + L+  Q ISE+A+  P + +A Q
Sbjct: 128 IPLGIDQLIQSVTALRFPGGQTKTQARSILILIQMISEAARFNPILWRARQ 178


>pdb|1M2T|A Chain A, Mistletoe Lectin I From Viscum Album In Complex With
           Adenine Monophosphate. Crystal Structure At 1.9 A
           Resolution
 pdb|2R9K|A Chain A, Crystal Structure Of Misteltoe Lectin I In Complex With
           Phloretamide
          Length = 254

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 450 VPVGLSQMI---YATRFPPIACPTQCSTRLVTHQSISESAQAAPSVNQATQ 497
           +P+G+ Q+I    A RFP     TQ  + L+  Q ISE+A+  P + +A Q
Sbjct: 128 IPLGIDQLIQSVTALRFPGGQTKTQARSILILIQMISEAARFNPILWRARQ 178


>pdb|1ONK|A Chain A, Mistletoe Lectin I From Viscum Album
          Length = 254

 Score = 30.8 bits (68), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 9/65 (13%)

Query: 450 VPVGLSQMI---YATRFPPIACPTQCSTRLVTHQSISESAQAAPSVNQATQIYPVQPQVQ 506
           +P+G+ Q+I    A RFP  +  TQ  + L+  Q ISE+A+  P + +  Q       + 
Sbjct: 128 IPLGIDQLIQSVTALRFPGGSTRTQARSILILIQMISEAARFNPILWRYRQ------YIN 181

Query: 507 AAASF 511
           + ASF
Sbjct: 182 SGASF 186


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,046,399
Number of Sequences: 62578
Number of extensions: 889414
Number of successful extensions: 1738
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1738
Number of HSP's gapped (non-prelim): 11
length of query: 760
length of database: 14,973,337
effective HSP length: 106
effective length of query: 654
effective length of database: 8,340,069
effective search space: 5454405126
effective search space used: 5454405126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)