Query 004343
Match_columns 760
No_of_seqs 95 out of 97
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 22:11:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v87_A Deltex protein 2; ring- 98.8 1.5E-09 5.2E-14 89.6 4.0 61 697-757 25-90 (114)
2 2ect_A Ring finger protein 126 98.8 3.8E-09 1.3E-13 82.1 4.1 48 696-758 14-61 (78)
3 1x4j_A Ring finger protein 38; 98.8 2.5E-09 8.5E-14 83.1 2.5 47 696-757 22-68 (75)
4 2kiz_A E3 ubiquitin-protein li 98.7 4.3E-09 1.5E-13 80.1 3.5 48 695-757 12-59 (69)
5 1iym_A EL5; ring-H2 finger, ub 98.7 5.6E-09 1.9E-13 76.2 3.8 48 696-758 4-52 (55)
6 2ep4_A Ring finger protein 24; 98.7 3.2E-09 1.1E-13 81.8 2.4 47 696-757 14-60 (74)
7 2ecm_A Ring finger and CHY zin 98.7 4.5E-09 1.5E-13 76.5 2.4 49 696-758 4-52 (55)
8 2l0b_A E3 ubiquitin-protein li 98.7 9.1E-09 3.1E-13 83.6 4.0 47 696-757 39-85 (91)
9 2ysl_A Tripartite motif-contai 98.6 5.1E-08 1.8E-12 74.4 6.4 48 696-758 19-66 (73)
10 2ecl_A Ring-box protein 2; RNF 98.6 4.9E-08 1.7E-12 78.3 6.2 56 697-758 15-73 (81)
11 2ea6_A Ring finger protein 4; 98.6 1.5E-08 5.1E-13 75.9 2.6 53 695-758 13-65 (69)
12 2d8t_A Dactylidin, ring finger 98.6 3.9E-08 1.3E-12 75.9 5.0 46 695-758 13-58 (71)
13 3ng2_A RNF4, snurf, ring finge 98.5 1.6E-08 5.4E-13 76.7 1.1 51 696-757 9-59 (71)
14 1chc_A Equine herpes virus-1 r 98.5 3E-08 1E-12 75.0 1.8 46 696-758 4-49 (68)
15 2ysj_A Tripartite motif-contai 98.5 9.4E-08 3.2E-12 71.8 4.4 45 696-755 19-63 (63)
16 2xeu_A Ring finger protein 4; 98.5 2.3E-08 7.7E-13 74.0 0.9 51 696-757 2-52 (64)
17 3dpl_R Ring-box protein 1; ubi 98.5 6.6E-08 2.3E-12 82.9 3.7 58 697-758 37-98 (106)
18 2csy_A Zinc finger protein 183 98.5 7.2E-08 2.5E-12 75.8 3.3 44 696-757 14-57 (81)
19 2ecy_A TNF receptor-associated 98.4 1.1E-07 3.9E-12 72.2 3.9 46 696-758 14-59 (66)
20 4ayc_A E3 ubiquitin-protein li 98.4 9.5E-08 3.3E-12 82.5 3.7 42 698-757 54-95 (138)
21 2ct2_A Tripartite motif protei 98.4 8.3E-08 2.8E-12 75.1 2.9 51 696-757 14-64 (88)
22 2ecj_A Tripartite motif-contai 98.4 1.4E-07 4.8E-12 69.0 3.8 45 696-755 14-58 (58)
23 2y43_A E3 ubiquitin-protein li 98.4 2.8E-08 9.6E-13 80.7 -0.5 63 677-757 1-65 (99)
24 2egp_A Tripartite motif-contai 98.4 1.7E-07 5.7E-12 72.3 3.8 49 696-758 11-62 (79)
25 1g25_A CDK-activating kinase a 98.3 1.7E-07 5.8E-12 71.0 2.8 49 697-758 3-52 (65)
26 2djb_A Polycomb group ring fin 98.3 8.8E-08 3E-12 74.1 1.2 46 696-758 14-59 (72)
27 1t1h_A Gspef-atpub14, armadill 98.3 2.8E-07 9.5E-12 71.6 3.3 46 695-757 6-51 (78)
28 2ecw_A Tripartite motif-contai 98.3 2.1E-07 7.3E-12 71.6 2.5 49 696-758 18-68 (85)
29 4ap4_A E3 ubiquitin ligase RNF 98.3 2E-07 6.8E-12 76.6 2.3 53 694-757 4-56 (133)
30 2ecn_A Ring finger protein 141 98.3 1.1E-07 3.9E-12 72.4 0.7 43 696-757 14-56 (70)
31 2yur_A Retinoblastoma-binding 98.3 2.9E-07 9.9E-12 71.9 2.8 47 696-758 14-61 (74)
32 2ckl_A Polycomb group ring fin 98.3 2.9E-07 1E-11 75.9 2.4 45 696-757 14-58 (108)
33 2ckl_B Ubiquitin ligase protei 98.3 2.3E-07 7.7E-12 81.6 1.8 46 696-757 53-98 (165)
34 2ecv_A Tripartite motif-contai 98.3 2.1E-07 7.1E-12 71.7 1.3 48 696-757 18-67 (85)
35 3fl2_A E3 ubiquitin-protein li 98.2 3.3E-07 1.1E-11 77.3 2.6 45 696-757 51-95 (124)
36 3lrq_A E3 ubiquitin-protein li 98.2 1.9E-07 6.6E-12 77.0 1.1 46 696-757 21-66 (100)
37 3ztg_A E3 ubiquitin-protein li 98.2 5.3E-07 1.8E-11 71.9 3.5 48 695-758 11-59 (92)
38 4a0k_B E3 ubiquitin-protein li 98.2 1.6E-07 5.4E-12 82.7 0.3 58 697-758 48-109 (117)
39 3l11_A E3 ubiquitin-protein li 98.2 5.9E-07 2E-11 74.6 3.3 45 696-757 14-58 (115)
40 1jm7_A BRCA1, breast cancer ty 98.2 5.7E-07 2E-11 73.3 2.0 47 696-757 20-66 (112)
41 4ap4_A E3 ubiquitin ligase RNF 98.1 5.7E-07 2E-11 73.9 0.2 52 695-757 70-121 (133)
42 1z6u_A NP95-like ring finger p 98.0 2E-06 6.7E-11 76.5 2.6 45 696-757 77-121 (150)
43 1bor_A Transcription factor PM 98.0 2E-06 6.9E-11 64.7 2.2 42 696-758 5-46 (56)
44 3hct_A TNF receptor-associated 97.9 3.2E-06 1.1E-10 71.1 2.5 45 696-757 17-61 (118)
45 1jm7_B BARD1, BRCA1-associated 97.9 3.3E-06 1.1E-10 70.9 2.4 42 696-757 21-63 (117)
46 1rmd_A RAG1; V(D)J recombinati 97.9 3.2E-06 1.1E-10 70.3 1.9 45 696-757 22-66 (116)
47 2d8s_A Cellular modulator of i 97.9 5.4E-06 1.8E-10 68.1 2.7 49 695-757 13-66 (80)
48 1e4u_A Transcriptional repress 97.8 8E-06 2.7E-10 66.5 2.5 48 696-758 10-59 (78)
49 4ic3_A E3 ubiquitin-protein li 97.8 1.2E-05 4.2E-10 63.4 3.4 40 696-757 23-63 (74)
50 2kre_A Ubiquitin conjugation f 97.7 1.7E-05 5.8E-10 66.8 3.4 45 695-757 27-71 (100)
51 2y1n_A E3 ubiquitin-protein li 97.7 1.2E-05 4.1E-10 83.0 2.9 46 696-758 331-376 (389)
52 2c2l_A CHIP, carboxy terminus 97.7 8.7E-06 3E-10 74.0 1.6 46 695-757 206-251 (281)
53 2kr4_A Ubiquitin conjugation f 97.6 3E-05 1E-09 63.1 3.3 45 695-757 12-56 (85)
54 1wgm_A Ubiquitin conjugation f 97.6 5.7E-05 2E-09 63.4 4.9 45 695-757 20-65 (98)
55 3knv_A TNF receptor-associated 97.5 1E-05 3.5E-10 71.4 -0.3 45 696-757 30-74 (141)
56 2ecg_A Baculoviral IAP repeat- 97.5 2.5E-05 8.5E-10 61.4 1.9 40 696-757 24-64 (75)
57 2ct0_A Non-SMC element 1 homol 97.5 7.9E-05 2.7E-09 61.4 4.3 48 695-757 13-60 (74)
58 2yu4_A E3 SUMO-protein ligase 97.4 3.8E-05 1.3E-09 63.2 1.9 48 695-756 5-57 (94)
59 3hcs_A TNF receptor-associated 97.2 8E-05 2.7E-09 65.6 1.4 45 696-757 17-61 (170)
60 2ea5_A Cell growth regulator w 97.2 0.00024 8.2E-09 56.1 3.9 41 696-758 14-55 (68)
61 2yho_A E3 ubiquitin-protein li 97.1 0.00028 9.6E-09 57.0 3.4 40 696-757 17-57 (79)
62 3t6p_A Baculoviral IAP repeat- 97.0 0.00024 8.1E-09 71.5 3.0 40 696-757 294-334 (345)
63 2vje_A E3 ubiquitin-protein li 97.0 0.00024 8.3E-09 55.1 1.7 45 696-758 7-54 (64)
64 2f42_A STIP1 homology and U-bo 96.9 0.00023 7.8E-09 66.6 1.4 46 695-757 104-149 (179)
65 2vje_B MDM4 protein; proto-onc 96.8 0.00032 1.1E-08 54.2 1.4 45 696-758 6-53 (63)
66 1wim_A KIAA0161 protein; ring 96.8 0.00029 9.8E-09 57.1 1.1 52 696-758 4-61 (94)
67 3htk_C E3 SUMO-protein ligase 96.6 0.0013 4.3E-08 65.8 4.2 48 695-757 179-228 (267)
68 3k1l_B Fancl; UBC, ring, RWD, 96.2 0.0011 3.8E-08 69.0 1.2 54 696-757 307-369 (381)
69 1vyx_A ORF K3, K3RING; zinc-bi 95.2 0.005 1.7E-07 48.2 0.9 46 696-757 5-55 (60)
70 3nw0_A Non-structural maintena 94.6 0.017 5.7E-07 55.5 3.2 47 696-757 179-225 (238)
71 2bay_A PRE-mRNA splicing facto 94.4 0.0099 3.4E-07 46.4 0.8 42 698-757 4-46 (61)
72 3vk6_A E3 ubiquitin-protein li 92.0 0.048 1.7E-06 48.4 1.5 44 698-757 2-45 (101)
73 1f62_A Transcription factor WS 74.2 3.3 0.00011 30.7 3.9 31 727-757 19-49 (51)
74 2lri_C Autoimmune regulator; Z 72.4 2.6 8.8E-05 33.9 3.1 49 696-758 11-59 (66)
75 2k16_A Transcription initiatio 71.3 3.2 0.00011 32.8 3.4 51 696-757 17-67 (75)
76 1wil_A KIAA1045 protein; ring 69.6 2.5 8.6E-05 37.1 2.6 30 728-757 34-75 (89)
77 2ysm_A Myeloid/lymphoid or mix 63.4 6.5 0.00022 33.0 3.9 49 696-755 6-54 (111)
78 1we9_A PHD finger family prote 61.0 2.2 7.4E-05 32.9 0.5 52 696-757 5-57 (64)
79 2jun_A Midline-1; B-BOX, TRIM, 60.0 4.6 0.00016 32.6 2.3 33 697-740 3-35 (101)
80 1mm2_A MI2-beta; PHD, zinc fin 56.7 4.6 0.00016 31.5 1.7 31 728-758 26-56 (61)
81 2l5u_A Chromodomain-helicase-D 53.4 6.1 0.00021 30.8 1.9 48 696-757 10-57 (61)
82 2lv9_A Histone-lysine N-methyl 51.6 12 0.0004 31.6 3.6 50 695-757 26-75 (98)
83 2ku3_A Bromodomain-containing 51.1 8.6 0.00029 31.2 2.5 55 691-756 10-64 (71)
84 2ysm_A Myeloid/lymphoid or mix 50.5 5 0.00017 33.7 1.1 47 699-756 56-102 (111)
85 2yql_A PHD finger protein 21A; 50.3 2.2 7.6E-05 32.5 -1.0 48 696-757 8-55 (56)
86 1wee_A PHD finger family prote 47.5 7.7 0.00026 30.8 1.7 52 695-757 14-65 (72)
87 2e6r_A Jumonji/ARID domain-con 46.0 7.7 0.00026 32.6 1.5 51 696-757 15-65 (92)
88 2yt5_A Metal-response element- 43.2 4 0.00014 31.5 -0.6 54 696-758 5-61 (66)
89 3v43_A Histone acetyltransfera 42.8 9.9 0.00034 32.4 1.8 39 697-740 5-43 (112)
90 2puy_A PHD finger protein 21A; 41.2 6.2 0.00021 30.3 0.3 46 697-756 5-50 (60)
91 1fp0_A KAP-1 corepressor; PHD 40.6 13 0.00044 31.8 2.1 48 697-758 25-72 (88)
92 3asl_A E3 ubiquitin-protein li 40.1 15 0.00051 29.5 2.3 30 728-757 38-68 (70)
93 2l43_A N-teminal domain from h 38.4 16 0.00054 30.5 2.3 51 696-757 24-74 (88)
94 1wew_A DNA-binding family prot 37.9 16 0.00055 29.5 2.2 50 696-757 15-71 (78)
95 1zfo_A LAsp-1; LIM domain, zin 37.8 9.8 0.00034 26.4 0.8 28 698-738 4-31 (31)
96 2e6s_A E3 ubiquitin-protein li 37.7 13 0.00044 30.6 1.6 30 728-757 46-76 (77)
97 3mjh_B Early endosome antigen 35.3 8 0.00027 28.6 0.0 15 695-709 3-17 (34)
98 1xwh_A Autoimmune regulator; P 35.1 7.3 0.00025 30.6 -0.2 49 696-758 7-55 (66)
99 1wem_A Death associated transc 34.4 11 0.00036 30.1 0.6 51 695-757 14-69 (76)
100 3v43_A Histone acetyltransfera 34.0 19 0.00066 30.5 2.2 30 728-757 82-111 (112)
101 1x62_A C-terminal LIM domain p 32.3 32 0.0011 26.6 3.0 30 696-739 14-43 (79)
102 1wen_A Inhibitor of growth fam 32.0 24 0.00082 28.5 2.3 29 729-759 37-66 (71)
103 2kwj_A Zinc finger protein DPF 30.9 13 0.00045 31.8 0.6 47 699-756 60-106 (114)
104 3ask_A E3 ubiquitin-protein li 30.4 19 0.00064 35.3 1.7 30 728-757 194-224 (226)
105 1wev_A Riken cDNA 1110020M19; 30.3 7.7 0.00026 32.3 -0.9 53 696-757 15-71 (88)
106 6rxn_A Rubredoxin; electron tr 30.3 22 0.00076 27.4 1.8 32 726-758 7-39 (46)
107 2dar_A PDZ and LIM domain prot 29.1 27 0.00091 27.7 2.1 30 696-739 24-53 (90)
108 3o70_A PHD finger protein 13; 29.0 15 0.00052 29.4 0.7 50 696-758 18-67 (68)
109 1weu_A Inhibitor of growth fam 28.0 29 0.00099 29.7 2.2 29 729-759 57-86 (91)
110 2lbm_A Transcriptional regulat 28.0 26 0.00088 32.1 2.1 30 728-757 80-116 (142)
111 2ri7_A Nucleosome-remodeling f 27.5 10 0.00036 33.6 -0.6 51 696-757 7-58 (174)
112 1x64_A Alpha-actinin-2 associa 26.7 22 0.00076 28.1 1.2 29 697-739 25-53 (89)
113 2xb1_A Pygopus homolog 2, B-ce 26.0 4.4 0.00015 34.8 -3.2 52 697-757 3-60 (105)
114 2d8x_A Protein pinch; LIM doma 25.2 29 0.00098 26.0 1.6 12 697-708 5-16 (70)
115 3shb_A E3 ubiquitin-protein li 25.1 28 0.00095 28.8 1.6 30 728-757 46-76 (77)
116 2cu8_A Cysteine-rich protein 2 24.2 35 0.0012 26.0 1.9 31 696-739 8-38 (76)
117 2kgg_A Histone demethylase jar 23.8 13 0.00045 28.0 -0.6 48 699-756 4-52 (52)
118 2l4z_A DNA endonuclease RBBP8, 23.2 27 0.00091 30.0 1.2 30 697-739 61-90 (123)
119 2d8y_A Eplin protein; LIM doma 23.1 37 0.0013 26.9 1.9 13 697-709 15-27 (91)
120 2cor_A Pinch protein; LIM doma 22.6 40 0.0014 26.3 2.0 13 696-708 14-26 (79)
121 2d8z_A Four and A half LIM dom 22.1 35 0.0012 25.4 1.5 11 698-708 6-16 (70)
122 1x4l_A Skeletal muscle LIM-pro 21.8 42 0.0014 25.3 1.9 13 697-709 5-17 (72)
123 2cur_A Skeletal muscle LIM-pro 21.4 38 0.0013 25.3 1.5 12 697-708 5-16 (69)
124 1x61_A Thyroid receptor intera 21.2 37 0.0013 25.4 1.5 11 698-708 6-16 (72)
125 1yuz_A Nigerythrin; rubrythrin 21.2 26 0.0009 32.8 0.8 23 724-758 172-195 (202)
126 1a7i_A QCRP2 (LIM1); LIM domai 20.7 27 0.00094 26.9 0.7 12 697-708 7-18 (81)
127 1wig_A KIAA1808 protein; LIM d 20.6 36 0.0012 26.2 1.3 41 691-744 25-66 (73)
128 1wep_A PHF8; structural genomi 20.5 25 0.00087 28.2 0.5 52 696-758 11-63 (79)
No 1
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.84 E-value=1.5e-09 Score=89.58 Aligned_cols=61 Identities=23% Similarity=0.419 Sum_probs=42.9
Q ss_pred CcccccccccccCCCc-C---CccCCCCCCceEEecCCccchHhhhhhcCCCCC-CCCCCCCCCCC
Q 004343 697 GYKCDLCNRDLSFASE-G---QILQPGVRPSTAVLPCGHHFHDYCLQQITPADQ-TDNPPCIHCDM 757 (760)
Q Consensus 697 gqtCGICsKdLSERSs-G---RIsrsndLPVVAVLSCGHVFHAECLEA~TpeSq-k~DPpCPLCr~ 757 (760)
...|.||...|..... . .........++.+|+|||+||.+||+.|..... .....||+|+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~ 90 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCC
Confidence 3589999999976531 0 011122335677999999999999999984322 35678999985
No 2
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.78 E-value=3.8e-09 Score=82.11 Aligned_cols=48 Identities=31% Similarity=0.768 Sum_probs=39.1
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
....|.||...+.... .+.+|+|||+||.+||+.|.. ....||+|+..
T Consensus 14 ~~~~C~IC~~~~~~~~-----------~~~~~~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~ 61 (78)
T 2ect_A 14 SGLECPVCKEDYALGE-----------SVRQLPCNHLFHDSCIVPWLE----QHDSCPVCRKS 61 (78)
T ss_dssp SSCCCTTTTSCCCTTS-----------CEEECTTSCEEETTTTHHHHT----TTCSCTTTCCC
T ss_pred CCCCCeeCCccccCCC-----------CEEEeCCCCeecHHHHHHHHH----cCCcCcCcCCc
Confidence 5678999998886542 467899999999999999973 34689999853
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=2.5e-09 Score=83.09 Aligned_cols=47 Identities=30% Similarity=0.605 Sum_probs=38.8
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.... .+.+|+|||+||.+||+.|.. ....||+|+.
T Consensus 22 ~~~~C~IC~~~~~~~~-----------~~~~l~C~H~fh~~Ci~~w~~----~~~~CP~Cr~ 68 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ-----------LLRVLPCNHEFHAKCVDKWLK----ANRTCPICRA 68 (75)
T ss_dssp SCCEETTTTEECCBTC-----------EEEEETTTEEEETTHHHHHHH----HCSSCTTTCC
T ss_pred CCCCCeECCcccCCCC-----------eEEEECCCCHhHHHHHHHHHH----cCCcCcCcCC
Confidence 5678999998886542 578899999999999999973 2468999985
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.75 E-value=4.3e-09 Score=80.15 Aligned_cols=48 Identities=31% Similarity=0.601 Sum_probs=38.3
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
.....|.||...+.... .+.+|+|||+||.+||..|... ...||+|+.
T Consensus 12 ~~~~~C~IC~~~~~~~~-----------~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~ 59 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGE-----------DVRRLPCMHLFHQVCVDQWLIT----NKKCPICRV 59 (69)
T ss_dssp TCCCSBTTTTBCCCSSS-----------CEEECTTSCEEEHHHHHHHHHH----CSBCTTTCS
T ss_pred CCCCCCeeCCccccCCC-----------cEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCc
Confidence 36678999998886432 3678999999999999999743 446999985
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.74 E-value=5.6e-09 Score=76.20 Aligned_cols=48 Identities=29% Similarity=0.715 Sum_probs=37.9
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEec-CCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLP-CGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLS-CGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
+...|.||...+.... .+.+|+ |||+||.+||+.|.. ....||+|+..
T Consensus 4 ~~~~C~IC~~~~~~~~-----------~~~~~~~C~H~f~~~Ci~~w~~----~~~~CP~Cr~~ 52 (55)
T 1iym_A 4 DGVECAVCLAELEDGE-----------EARFLPRCGHGFHAECVDMWLG----SHSTCPLCRLT 52 (55)
T ss_dssp CSCCCTTTCCCCCTTS-----------CCEECSSSCCEECTTHHHHTTT----TCCSCSSSCCC
T ss_pred CCCcCccCCccccCCC-----------ceEECCCCCCcccHHHHHHHHH----cCCcCcCCCCE
Confidence 4568999998886642 245676 999999999999983 35789999863
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=3.2e-09 Score=81.80 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=38.4
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
....|.||...+.... .+.+|+|||+||.+||+.|... ...||+|+.
T Consensus 14 ~~~~C~IC~~~~~~~~-----------~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~ 60 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRD-----------ELGICPCKHAFHRKCLIKWLEV----RKVCPLCNM 60 (74)
T ss_dssp CSCBCSSSCCBCCSSS-----------CEEEETTTEEEEHHHHHHHHHH----CSBCTTTCC
T ss_pred CCCCCcCCCcccCCCC-----------cEEEcCCCCEecHHHHHHHHHc----CCcCCCcCc
Confidence 5678999999887642 4678999999999999999842 358999985
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.71 E-value=4.5e-09 Score=76.46 Aligned_cols=49 Identities=27% Similarity=0.597 Sum_probs=39.1
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
+...|.||...+.... ..+.+|+|||+||.+||+.|... ...||+|+..
T Consensus 4 ~~~~C~IC~~~~~~~~----------~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSR----------VVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTT----------SCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCS
T ss_pred CCCcCcccChhhcCCC----------cCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCc
Confidence 5578999998886531 25789999999999999999843 3789999863
No 8
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.69 E-value=9.1e-09 Score=83.62 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=38.7
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
....|.||...+.... .+.+|+|||+||.+||+.|.. ....||+|+.
T Consensus 39 ~~~~C~IC~~~~~~~~-----------~~~~l~C~H~Fh~~Ci~~wl~----~~~~CP~Cr~ 85 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGD-----------VATELPCHHYFHKPCVSIWLQ----KSGTCPVCRC 85 (91)
T ss_dssp SCSEETTTTEECCTTC-----------EEEEETTTEEEEHHHHHHHHT----TTCBCTTTCC
T ss_pred CCCCCcccChhhcCCC-----------cEEecCCCChHHHHHHHHHHH----cCCcCcCcCc
Confidence 5678999998886542 467899999999999999984 3468999985
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=5.1e-08 Score=74.42 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=38.6
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
+...|.||...+.+ ..+|+|||+||.+||+.|... ......||+|+..
T Consensus 19 ~~~~C~IC~~~~~~--------------~~~~~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 19 EEVICPICLDILQK--------------PVTIDCGHNFCLKCITQIGET-SCGFFKCPLCKTS 66 (73)
T ss_dssp CCCBCTTTCSBCSS--------------EEECTTCCEEEHHHHHHHCSS-SCSCCCCSSSCCC
T ss_pred cCCEeccCCcccCC--------------eEEcCCCChhhHHHHHHHHHc-CCCCCCCCCCCCc
Confidence 66799999987764 356799999999999999853 2357789999863
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=4.9e-08 Score=78.26 Aligned_cols=56 Identities=20% Similarity=0.391 Sum_probs=37.1
Q ss_pred CcccccccccccCC-C--cCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 697 GYKCDLCNRDLSFA-S--EGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 697 gqtCGICsKdLSER-S--sGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
...|.||...+.+. + .... ..+-.++.++.|||+||.+||+.|... ...||+|+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~--~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 73 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAEN--KQEDCVVVWGECNHSFHNCCMSLWVKQ----NNRCPLCQQD 73 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHT--CTTTCCEEEETTSCEEEHHHHHHHTTT----CCBCTTTCCB
T ss_pred CCCCcccChhhhccCccccccc--CCCceEEEeCCCCCccChHHHHHHHHh----CCCCCCcCCC
Confidence 45688888888663 1 0000 011224555569999999999999843 3589999863
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.5e-08 Score=75.92 Aligned_cols=53 Identities=21% Similarity=0.417 Sum_probs=40.6
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
.+...|.||...+..... ....+.+|.|||+||.+|++.|.. ....||+|+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~-------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~ 65 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQ-------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRKK 65 (69)
T ss_dssp TCCCCCTTTCCCHHHHTT-------TTCCEEECSSSCEEEHHHHHHHHH----HCSSCTTTCCC
T ss_pred CCCCCCcccCcccccccc-------ccCCeEeCCCCChhcHHHHHHHHH----cCCCCCCCCCc
Confidence 367789999988875321 113568899999999999999974 25689999863
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=3.9e-08 Score=75.85 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=37.1
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
.+...|.||...+.+ ..+|+|||+||.+|++.|.. ....||+|+..
T Consensus 13 ~~~~~C~IC~~~~~~--------------~~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~ 58 (71)
T 2d8t_A 13 LTVPECAICLQTCVH--------------PVSLPCKHVFCYLCVKGASW----LGKRCALCRQE 58 (71)
T ss_dssp SSCCBCSSSSSBCSS--------------EEEETTTEEEEHHHHHHCTT----CSSBCSSSCCB
T ss_pred CCCCCCccCCcccCC--------------CEEccCCCHHHHHHHHHHHH----CCCcCcCcCch
Confidence 366789999887744 35789999999999999984 34789999863
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.53 E-value=1.6e-08 Score=76.66 Aligned_cols=51 Identities=22% Similarity=0.427 Sum_probs=39.7
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+...-. .-..+.+|+|||+||.+|++.|.. ....||+|+.
T Consensus 9 ~~~~C~IC~~~~~~~~~-------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 59 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQ-------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRK 59 (71)
T ss_dssp TCCBCTTTCCBHHHHHT-------TTCCEEECTTSCEEEHHHHHHHHH----HCSBCTTTCC
T ss_pred CCCCCcccChhhhcccc-------ccCCeEeCCCCChHhHHHHHHHHH----cCCCCCCCCC
Confidence 66789999998876310 113568999999999999999973 3468999985
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.49 E-value=3e-08 Score=75.02 Aligned_cols=46 Identities=30% Similarity=0.701 Sum_probs=37.1
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
....|.||...+.. .+.+|+|||+||.+|++.|.. ....||+|+..
T Consensus 4 ~~~~C~IC~~~~~~-------------~~~~~~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~ 49 (68)
T 1chc_A 4 VAERCPICLEDPSN-------------YSMALPCLHAFCYVCITRWIR----QNPTCPLCKVP 49 (68)
T ss_dssp CCCCCSSCCSCCCS-------------CEEETTTTEEESTTHHHHHHH----HSCSTTTTCCC
T ss_pred CCCCCeeCCccccC-------------CcEecCCCCeeHHHHHHHHHh----CcCcCcCCChh
Confidence 55689999887754 247899999999999999973 34689999853
No 15
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=9.4e-08 Score=71.81 Aligned_cols=45 Identities=27% Similarity=0.521 Sum_probs=36.0
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHC 755 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLC 755 (760)
+...|.||...+.+ ..+|+|||+||.+||+.|... ......||+|
T Consensus 19 ~~~~C~IC~~~~~~--------------p~~~~CgH~fC~~Ci~~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK--------------PVTIDCGHNFCLKCITQIGET-SCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS--------------CEECTTSSEECHHHHHHHHHH-CSSCCCCSCC
T ss_pred cCCCCCcCCchhCC--------------eEEeCCCCcchHHHHHHHHHc-CCCCCcCcCC
Confidence 66789999987764 246799999999999999853 2346789998
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.49 E-value=2.3e-08 Score=73.98 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=38.9
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.+... ....+.+++|||+||.+|++.|... ...||+|+.
T Consensus 2 ~~~~C~IC~~~~~~~~~-------~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~ 52 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQ-------NGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRK 52 (64)
T ss_dssp CCCBCTTTCCBHHHHHH-------TTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCC
T ss_pred CCCCCCccChhhhCccc-------cCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCc
Confidence 35689999998865310 1125689999999999999999742 568999985
No 17
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.48 E-value=6.6e-08 Score=82.90 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=40.4
Q ss_pred CcccccccccccCCCc----CCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 697 GYKCDLCNRDLSFASE----GQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 697 gqtCGICsKdLSERSs----GRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
...|.||...+...-. .......+--.+.+|+|||+||.+||+.|.. ....||+|+..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~----~~~~CP~Cr~~ 98 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK----TRQVCPLDNRE 98 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT----TCSBCSSSCSB
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH----cCCcCcCCCCc
Confidence 4679999888876520 0001122334678999999999999999974 35789999863
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=7.2e-08 Score=75.81 Aligned_cols=44 Identities=27% Similarity=0.685 Sum_probs=36.5
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
....|.||...+.. ..+|+|||+||..|++.|.. ....||+|+.
T Consensus 14 ~~~~C~IC~~~~~~--------------p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~ 57 (81)
T 2csy_A 14 IPFRCFICRQAFQN--------------PVVTKCRHYFCESCALEHFR----ATPRCYICDQ 57 (81)
T ss_dssp CCSBCSSSCSBCCS--------------EEECTTSCEEEHHHHHHHHH----HCSBCSSSCC
T ss_pred CCCCCcCCCchhcC--------------eeEccCCCHhHHHHHHHHHH----CCCcCCCcCc
Confidence 56789999888754 24799999999999999983 3668999985
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.1e-07 Score=72.16 Aligned_cols=46 Identities=28% Similarity=0.731 Sum_probs=37.3
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
+...|.||...+.+. .++.|||+||.+|++.|.. .....||+|+..
T Consensus 14 ~~~~C~IC~~~~~~p--------------~~~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP--------------KQTECGHRFCESCMAALLS---SSSPKCTACQES 59 (66)
T ss_dssp CCEECTTTCCEESSC--------------CCCSSSCCCCHHHHHHHHT---TSSCCCTTTCCC
T ss_pred cCCCCCCCChHhcCe--------------eECCCCCHHHHHHHHHHHH---hCcCCCCCCCcC
Confidence 678999999888652 2379999999999999985 346789999863
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.44 E-value=9.5e-08 Score=82.49 Aligned_cols=42 Identities=24% Similarity=0.647 Sum_probs=34.7
Q ss_pred cccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 698 YKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 698 qtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
..|.||...+.. ..+|+|||+||..|+..|.. ....||+|+.
T Consensus 54 ~~C~iC~~~~~~--------------~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 95 (138)
T 4ayc_A 54 LQCIICSEYFIE--------------AVTLNCAHSFCSYCINEWMK----RKIECPICRK 95 (138)
T ss_dssp SBCTTTCSBCSS--------------EEEETTSCEEEHHHHHHHTT----TCSBCTTTCC
T ss_pred CCCcccCcccCC--------------ceECCCCCCccHHHHHHHHH----cCCcCCCCCC
Confidence 479999887754 35799999999999999973 4567999985
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=8.3e-08 Score=75.07 Aligned_cols=51 Identities=20% Similarity=0.543 Sum_probs=39.6
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.... ....+|+|||+||.+|++.|.... .....||+|+.
T Consensus 14 ~~~~C~IC~~~~~~~~----------~~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~ 64 (88)
T 2ct2_A 14 EVLECPICMESFTEEQ----------LRPKLLHCGHTICRQCLEKLLASS-INGVRCPFCSK 64 (88)
T ss_dssp SCCBCTTTCCBCCTTS----------SCEEECSSSCEEEHHHHHHHHHHC-SSCBCCTTTCC
T ss_pred CCCCCccCCccccccC----------CCeEECCCCChhhHHHHHHHHHcC-CCCcCCCCCCC
Confidence 5678999998887642 125688999999999999997432 23578999986
No 22
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.4e-07 Score=68.99 Aligned_cols=45 Identities=24% Similarity=0.631 Sum_probs=35.9
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHC 755 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLC 755 (760)
+...|.||...+.+. .+|+|||+||.+||+.|.... .....||+|
T Consensus 14 ~~~~C~IC~~~~~~p--------------~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP--------------VIIECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC--------------CCCSSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred cCCCCccCCcccCcc--------------EeCCCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 567899999887652 358999999999999996432 357789998
No 23
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.40 E-value=2.8e-08 Score=80.68 Aligned_cols=63 Identities=16% Similarity=0.426 Sum_probs=39.4
Q ss_pred cccccccCCCCCCCCCCC--CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCC
Q 004343 677 MAREIRLRLPQDSNRFPQ--PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIH 754 (760)
Q Consensus 677 vA~SqRERWS~DSEqSVS--PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPL 754 (760)
||...-.+|...... .+ .+...|.||...+.. .+.+++|||+||..|++.|.. ....||+
T Consensus 1 Ma~~~~~~~~~~~~~-~~~~~~~~~C~IC~~~~~~-------------p~~~~~CgH~fC~~Ci~~~~~----~~~~CP~ 62 (99)
T 2y43_A 1 MDSLAESRWPPGLAV-MKTIDDLLRCGICFEYFNI-------------AMIIPQCSHNYCSLCIRKFLS----YKTQCPT 62 (99)
T ss_dssp -------CCCGGGGG-GHHHHHHTBCTTTCSBCSS-------------EEECTTTCCEEEHHHHHHHHT----TCCBCTT
T ss_pred CCccccccCCcchhH-HHhCCCCCCcccCChhhCC-------------cCEECCCCCHhhHHHHHHHHH----CCCCCCC
Confidence 444555667432211 11 155789999988765 233348999999999999985 3478999
Q ss_pred CCC
Q 004343 755 CDM 757 (760)
Q Consensus 755 Cr~ 757 (760)
|+.
T Consensus 63 Cr~ 65 (99)
T 2y43_A 63 CCV 65 (99)
T ss_dssp TCC
T ss_pred CCC
Confidence 985
No 24
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.40 E-value=1.7e-07 Score=72.28 Aligned_cols=49 Identities=20% Similarity=0.474 Sum_probs=38.3
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCC---CCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQ---TDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSq---k~DPpCPLCr~G 758 (760)
+...|.||...+.+. .+|+|||+||.+|++.|..... .....||+|+..
T Consensus 11 ~~~~C~IC~~~~~~p--------------~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~ 62 (79)
T 2egp_A 11 EEVTCPICLELLTEP--------------LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62 (79)
T ss_dssp CCCEETTTTEECSSC--------------CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCC
T ss_pred cCCCCcCCCcccCCe--------------eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCc
Confidence 567899999887552 2479999999999999986432 237789999853
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.35 E-value=1.7e-07 Score=71.01 Aligned_cols=49 Identities=20% Similarity=0.441 Sum_probs=37.1
Q ss_pred Ccccccccc-cccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 697 GYKCDLCNR-DLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 697 gqtCGICsK-dLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
...|+||.. .+.... ..+.+++|||+||.+|++.|... ....||+|+..
T Consensus 3 ~~~C~IC~~~~~~~~~----------~~~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~ 52 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS----------LKLMVNVCGHTLCESCVDLLFVR---GAGNCPECGTP 52 (65)
T ss_dssp TTCCSTTTTHHHHCSS----------CCEEECTTCCCEEHHHHHHHHHT---TSSSCTTTCCC
T ss_pred CCcCCcCCCCccCCCc----------cCeecCCCCCHhHHHHHHHHHHc---CCCcCCCCCCc
Confidence 468999998 666532 13467899999999999999532 35679999863
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=8.8e-08 Score=74.06 Aligned_cols=46 Identities=22% Similarity=0.447 Sum_probs=36.7
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
+...|.||...+.+ .+.++.|||+||.+||+.|... ...||+|+..
T Consensus 14 ~~~~C~IC~~~~~~-------------p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 59 (72)
T 2djb_A 14 PYILCSICKGYLID-------------ATTITECLHTFCKSCIVRHFYY----SNRCPKCNIV 59 (72)
T ss_dssp GGGSCTTTSSCCSS-------------CEECSSSCCEECHHHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCCCCChHHHC-------------cCEECCCCCHHHHHHHHHHHHc----CCcCCCcCcc
Confidence 56789999887765 2444599999999999999832 5789999863
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.31 E-value=2.8e-07 Score=71.57 Aligned_cols=46 Identities=13% Similarity=0.327 Sum_probs=37.5
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
++...|+||...+.+ ..+++|||+||..|++.|... ....||+|+.
T Consensus 6 ~~~~~C~IC~~~~~~--------------Pv~~~CgH~fc~~Ci~~~~~~---~~~~CP~C~~ 51 (78)
T 1t1h_A 6 PEYFRCPISLELMKD--------------PVIVSTGQTYERSSIQKWLDA---GHKTCPKSQE 51 (78)
T ss_dssp SSSSSCTTTSCCCSS--------------EEEETTTEEEEHHHHHHHHTT---TCCBCTTTCC
T ss_pred cccCCCCCccccccC--------------CEEcCCCCeecHHHHHHHHHH---CcCCCCCCcC
Confidence 467899999988765 246799999999999999852 2677999985
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.31 E-value=2.1e-07 Score=71.62 Aligned_cols=49 Identities=18% Similarity=0.412 Sum_probs=37.8
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCC--CCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPAD--QTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeS--qk~DPpCPLCr~G 758 (760)
....|.||...+... .+|+|||+||.+||+.|.... ......||+|+..
T Consensus 18 ~~~~C~IC~~~~~~p--------------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 18 EEVTCPICLELLKEP--------------VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68 (85)
T ss_dssp TTTSCTTTCSCCSSC--------------EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCC
T ss_pred cCCCCcCCChhhCcc--------------eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCc
Confidence 567899998877542 378999999999999987542 2346789999853
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.30 E-value=2e-07 Score=76.57 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=39.6
Q ss_pred CCCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 694 QPIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 694 SPdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
..+...|+||...+.+.-. +...+.+|.|||+||.+|++.|.. ....||+|+.
T Consensus 4 ~~~~~~C~IC~~~~~~~~~-------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 56 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQ-------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRK 56 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHH-------TTCCEEEETTCCEEEHHHHHHHHT----TCSBCTTTCC
T ss_pred CCCCCCCcccChhhhCccc-------cccCeEecCCCChhhHHHHHHHHH----hCCCCCCCCC
Confidence 3467899999988875310 112468999999999999999973 3458999985
No 30
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.1e-07 Score=72.42 Aligned_cols=43 Identities=23% Similarity=0.619 Sum_probs=35.4
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.. .+|+|||+||.+|++.|.. ....||+|+.
T Consensus 14 ~~~~C~IC~~~~~~---------------~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 56 (70)
T 2ecn_A 14 DEEECCICMDGRAD---------------LILPCAHSFCQKCIDKWSD----RHRNCPICRL 56 (70)
T ss_dssp CCCCCSSSCCSCCS---------------EEETTTEEECHHHHHHSSC----CCSSCHHHHH
T ss_pred CCCCCeeCCcCccC---------------cccCCCCcccHHHHHHHHH----CcCcCCCcCC
Confidence 56789999876532 5899999999999999984 4778999974
No 31
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.29 E-value=2.9e-07 Score=71.91 Aligned_cols=47 Identities=26% Similarity=0.639 Sum_probs=37.5
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEec-CCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLP-CGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLS-CGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
+...|.||...+.+. .+|+ |||+||.+||+.|.... ....||+|+..
T Consensus 14 ~~~~C~IC~~~~~~p--------------~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~ 61 (74)
T 2yur_A 14 DELLCLICKDIMTDA--------------VVIPCCGNSYCDECIRTALLES--DEHTCPTCHQN 61 (74)
T ss_dssp GGGSCSSSCCCCTTC--------------EECSSSCCEECTTHHHHHHHHS--SSSCCSSSCCS
T ss_pred CCCCCcCCChHHhCC--------------eEcCCCCCHHHHHHHHHHHHhc--CCCcCCCCCCc
Confidence 667999998877652 4588 99999999999998533 24689999863
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.26 E-value=2.9e-07 Score=75.94 Aligned_cols=45 Identities=24% Similarity=0.533 Sum_probs=36.1
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.+ .+.+++|||+||..|++.|... ...||+|+.
T Consensus 14 ~~~~C~IC~~~~~~-------------p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~ 58 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-------------ATTIIECLHSFCKTCIVRYLET----SKYCPICDV 58 (108)
T ss_dssp GGTBCTTTSSBCSS-------------EEEETTTCCEEEHHHHHHHHTS----CSBCTTTCC
T ss_pred CcCCCccCChHHhC-------------cCEeCCCCChhhHHHHHHHHHh----CCcCcCCCc
Confidence 46789999988865 2344599999999999999843 378999985
No 33
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.25 E-value=2.3e-07 Score=81.62 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=36.8
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.. .+.+++|||+||.+|++.|... ....||+|+.
T Consensus 53 ~~~~C~IC~~~~~~-------------p~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~ 98 (165)
T 2ckl_B 53 SELMCPICLDMLKN-------------TMTTKECLHRFCADCIITALRS---GNKECPTCRK 98 (165)
T ss_dssp HHHBCTTTSSBCSS-------------EEEETTTCCEEEHHHHHHHHHT---TCCBCTTTCC
T ss_pred CCCCCcccChHhhC-------------cCEeCCCCChhHHHHHHHHHHh---CcCCCCCCCC
Confidence 45689999888765 2445699999999999999852 2678999985
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=2.1e-07 Score=71.67 Aligned_cols=48 Identities=25% Similarity=0.568 Sum_probs=37.0
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCC--CCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPAD--QTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeS--qk~DPpCPLCr~ 757 (760)
+...|.||...+... .+|+|||+||.+||+.|.... ......||+|+.
T Consensus 18 ~~~~C~IC~~~~~~p--------------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~ 67 (85)
T 2ecv_A 18 EEVTCPICLELLTQP--------------LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI 67 (85)
T ss_dssp CCCCCTTTCSCCSSC--------------BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCC
T ss_pred CCCCCCCCCcccCCc--------------eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCC
Confidence 567899999887542 357999999999999987431 123688999985
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.25 E-value=3.3e-07 Score=77.27 Aligned_cols=45 Identities=18% Similarity=0.385 Sum_probs=36.0
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|+||...+.. ..+|+|||+||..||+.|.. .....||+|+.
T Consensus 51 ~~~~C~IC~~~~~~--------------p~~~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~ 95 (124)
T 3fl2_A 51 ETFQCICCQELVFR--------------PITTVCQHNVCKDCLDRSFR---AQVFSCPACRY 95 (124)
T ss_dssp HHTBCTTTSSBCSS--------------EEECTTSCEEEHHHHHHHHH---TTCCBCTTTCC
T ss_pred cCCCCCcCChHHcC--------------cEEeeCCCcccHHHHHHHHh---HCcCCCCCCCc
Confidence 44689999988774 24679999999999999984 23458999985
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.25 E-value=1.9e-07 Score=76.96 Aligned_cols=46 Identities=17% Similarity=0.439 Sum_probs=36.8
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.. .+.++.|||+||..||+.|.... ...||+|+.
T Consensus 21 ~~~~C~IC~~~~~~-------------p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~ 66 (100)
T 3lrq_A 21 EVFRCFICMEKLRD-------------ARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRA 66 (100)
T ss_dssp HHTBCTTTCSBCSS-------------EEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCC
T ss_pred CCCCCccCCccccC-------------ccccCCCCChhhHHHHHHHHHHC---cCCCCCCCC
Confidence 45689999998865 24449999999999999998533 278999985
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.24 E-value=5.3e-07 Score=71.91 Aligned_cols=48 Identities=27% Similarity=0.678 Sum_probs=38.0
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEec-CCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLP-CGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLS-CGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
.+...|+||...+.+. .+|+ |||+|+..||+.|.... ....||+|+..
T Consensus 11 ~~~~~C~IC~~~~~~p--------------~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~ 59 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA--------------VVIPCCGNSYCDECIRTALLES--DEHTCPTCHQN 59 (92)
T ss_dssp CTTTEETTTTEECSSC--------------EECTTTCCEECHHHHHHHHHHC--TTCCCTTTCCS
T ss_pred CcCCCCCCCChhhcCc--------------eECCCCCCHHHHHHHHHHHHhc--CCCcCcCCCCc
Confidence 3678999999888752 4788 99999999999997432 24789999864
No 38
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.23 E-value=1.6e-07 Score=82.66 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=0.4
Q ss_pred CcccccccccccCCCc----CCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 697 GYKCDLCNRDLSFASE----GQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 697 gqtCGICsKdLSERSs----GRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
...|.||...+...-. .......+--++.+++|||+||.+|+..|.. ....||+|+..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~----~~~~CP~Cr~~ 109 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK----TRQVCPLDNRE 109 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH----cCCcCCCCCCe
Confidence 4689999999876420 0011112334567789999999999999984 35789999863
No 39
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.21 E-value=5.9e-07 Score=74.63 Aligned_cols=45 Identities=24% Similarity=0.546 Sum_probs=36.8
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.. ..+|+|||+||..||+.|... ....||+|+.
T Consensus 14 ~~~~C~iC~~~~~~--------------p~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~ 58 (115)
T 3l11_A 14 SECQCGICMEILVE--------------PVTLPCNHTLCKPCFQSTVEK---ASLCCPFCRR 58 (115)
T ss_dssp HHHBCTTTCSBCSS--------------CEECTTSCEECHHHHCCCCCT---TTSBCTTTCC
T ss_pred CCCCCccCCcccCc--------------eeEcCCCCHHhHHHHHHHHhH---CcCCCCCCCc
Confidence 56789999988765 246799999999999999853 2578999985
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.15 E-value=5.7e-07 Score=73.30 Aligned_cols=47 Identities=17% Similarity=0.481 Sum_probs=36.0
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
....|.||...+... .+|+|||+||.+|++.|.... .....||+|+.
T Consensus 20 ~~~~C~IC~~~~~~p--------------~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~ 66 (112)
T 1jm7_A 20 KILECPICLELIKEP--------------VSTKCDHIFCKFCMLKLLNQK-KGPSQCPLCKN 66 (112)
T ss_dssp HHTSCSSSCCCCSSC--------------CBCTTSCCCCSHHHHHHHHSS-SSSCCCTTTSC
T ss_pred CCCCCcccChhhcCe--------------EECCCCCHHHHHHHHHHHHhC-CCCCCCcCCCC
Confidence 356899998877542 247999999999999998533 23468999985
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.06 E-value=5.7e-07 Score=73.86 Aligned_cols=52 Identities=21% Similarity=0.421 Sum_probs=38.3
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
.+...|.||...+.+... ....+.++.|||+||..|++.|.. ....||+|+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~-------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 121 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQ-------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRK 121 (133)
T ss_dssp SSSCBCTTTCCBHHHHHH-------TTCCEEEETTSBEEEHHHHHHHHH----HCSBCTTTCC
T ss_pred CCCCCCCCCCCccccccc-------cCcceEeCCCCChhhHHHHHHHHH----cCCCCCCCCC
Confidence 456778888887765310 112457999999999999999983 3468999985
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.00 E-value=2e-06 Score=76.52 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=36.0
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.. ..+|+|||+||..||+.|... ....||+|+.
T Consensus 77 ~~~~C~IC~~~~~~--------------pv~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~ 121 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ--------------PVTTECFHNVCKDCLQRSFKA---QVFSCPACRH 121 (150)
T ss_dssp HHTBCTTTSSBCSS--------------EEECTTSCEEEHHHHHHHHHT---TCCBCTTTCC
T ss_pred cCCEeecCChhhcC--------------CEEcCCCCchhHHHHHHHHHh---CCCcCCCCCc
Confidence 45689999887765 245899999999999999853 3457999985
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.00 E-value=2e-06 Score=64.74 Aligned_cols=42 Identities=24% Similarity=0.575 Sum_probs=33.7
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
+...|.||...+... .+|+|||+|+..||+.+ ...||+|+..
T Consensus 5 ~~~~C~IC~~~~~~p--------------~~l~CgH~fC~~Ci~~~-------~~~CP~Cr~~ 46 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP--------------KLLPCLHTLCSGCLEAS-------GMQCPICQAP 46 (56)
T ss_dssp CCSSCSSSCSSCBCC--------------SCSTTSCCSBTTTCSSS-------SSSCSSCCSS
T ss_pred cCCCceEeCCccCCe--------------EEcCCCCcccHHHHccC-------CCCCCcCCcE
Confidence 567899998877642 47899999999999883 4579999853
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.93 E-value=3.2e-06 Score=71.10 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=36.0
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.. ..+++|||+||..|++.|.... ...||+|+.
T Consensus 17 ~~~~C~IC~~~~~~--------------p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~ 61 (118)
T 3hct_A 17 SKYECPICLMALRE--------------AVQTPCGHRFCKACIIKSIRDA---GHKCPVDNE 61 (118)
T ss_dssp GGGBCTTTCSBCSS--------------EEECTTSCEEEHHHHHHHHHHH---CSBCTTTCC
T ss_pred CCCCCCcCChhhcC--------------eEECCcCChhhHHHHHHHHhhC---CCCCCCCCC
Confidence 66799999988764 2468999999999999997533 237999975
No 45
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.92 E-value=3.3e-06 Score=70.92 Aligned_cols=42 Identities=24% Similarity=0.486 Sum_probs=34.7
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEe-cCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVL-PCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVL-SCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|+||...+... .+| +|||+|+..||+.|.. ..||+|+.
T Consensus 21 ~~~~C~IC~~~~~~p--------------v~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~ 63 (117)
T 1jm7_B 21 KLLRCSRCTNILREP--------------VCLGGCEHIFCSNCVSDCIG------TGCPVCYT 63 (117)
T ss_dssp HTTSCSSSCSCCSSC--------------BCCCSSSCCBCTTTGGGGTT------TBCSSSCC
T ss_pred hCCCCCCCChHhhCc--------------cEeCCCCCHHHHHHHHHHhc------CCCcCCCC
Confidence 567899999887652 355 9999999999999984 67999985
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.90 E-value=3.2e-06 Score=70.30 Aligned_cols=45 Identities=20% Similarity=0.482 Sum_probs=35.9
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|+||...+.+ ..+++|||+||.+|++.|.... ...||+|+.
T Consensus 22 ~~~~C~IC~~~~~~--------------p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~ 66 (116)
T 1rmd_A 22 KSISCQICEHILAD--------------PVETSCKHLFCRICILRCLKVM---GSYCPSCRY 66 (116)
T ss_dssp HHTBCTTTCSBCSS--------------EEECTTSCEEEHHHHHHHHHHT---CSBCTTTCC
T ss_pred CCCCCCCCCcHhcC--------------cEEcCCCCcccHHHHHHHHhHC---cCcCCCCCC
Confidence 45689999888754 2358999999999999998432 567999985
No 47
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=5.4e-06 Score=68.06 Aligned_cols=49 Identities=29% Similarity=0.562 Sum_probs=36.9
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCC-----ccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCG-----HHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCG-----HVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
.+...|.||...+.... . .+|+|. |.||.+||++|.... ....||+|+.
T Consensus 13 ~~~~~C~IC~~~~~~~~-----------~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~ 66 (80)
T 2d8s_A 13 SSQDICRICHCEGDDES-----------P-LITPCHCTGSLHFVHQACLQQWIKSS--DTRCCELCKY 66 (80)
T ss_dssp TTSCCCSSSCCCCCSSS-----------C-EECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSSSCC
T ss_pred CCCCCCeEcCccccCCC-----------e-eEeccccCCcCCeeCHHHHHHHHhhC--CCCCCCCCCC
Confidence 46678999987664321 1 379996 999999999998543 3468999975
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.79 E-value=8e-06 Score=66.49 Aligned_cols=48 Identities=23% Similarity=0.555 Sum_probs=36.3
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEE--ecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAV--LPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAV--LSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
+...|+||...++... .++ |.|||.|+..||..+... ....||.|+..
T Consensus 10 ~~~~CpICle~~~~~d------------~~~~p~~CGH~fC~~Cl~~~~~~---~~~~CP~CR~~ 59 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDD------------INFFPCTCGYQICRFCWHRIRTD---ENGLCPACRKP 59 (78)
T ss_dssp CCCBCTTTCCBCCTTT------------TTCCSSTTSCCCCHHHHHHHTTS---SCSBCTTTCCB
T ss_pred cCCcCCccCccCcccc------------ccccccCCCCCcCHHHHHHHHhc---CCCCCCCCCCc
Confidence 6678999999775432 224 459999999999998643 46789999863
No 49
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.78 E-value=1.2e-05 Score=63.38 Aligned_cols=40 Identities=23% Similarity=0.538 Sum_probs=32.9
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCcc-chHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHH-FHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHV-FHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.+ +.+|+|||+ |+.+|++.| ..||+|+.
T Consensus 23 ~~~~C~iC~~~~~~--------------~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~ 63 (74)
T 4ic3_A 23 EEKLCKICMDRNIA--------------IVFVPCGHLVTCKQCAEAV--------DKCPMCYT 63 (74)
T ss_dssp HHTBCTTTSSSBCC--------------EEEETTCCBCCCHHHHTTC--------SBCTTTCC
T ss_pred cCCCCCCCCCCCCC--------------EEEcCCCChhHHHHhhhcC--------ccCCCcCc
Confidence 34689999866543 568899999 999999998 56999985
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.71 E-value=1.7e-05 Score=66.82 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=38.5
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
++.+.|+||...+.+. ++++|||+|.-.|++.|... ...||+|+.
T Consensus 27 p~~~~CpI~~~~m~dP--------------V~~~cGhtf~r~~I~~~l~~----~~~cP~~~~ 71 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP--------------VRLPSGTIMDRSIILRHLLN----SPTDPFNRQ 71 (100)
T ss_dssp STTTBCTTTCSBCSSE--------------EEETTTEEEEHHHHHHHTTS----CSBCSSSCC
T ss_pred cHhhCCcCccCcccCC--------------eECCCCCEEchHHHHHHHHc----CCCCCCCCC
Confidence 5889999999888773 57899999999999999852 578999975
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.71 E-value=1.2e-05 Score=82.96 Aligned_cols=46 Identities=22% Similarity=0.537 Sum_probs=36.1
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
....|.||...+.. +++++|||+||..|++.|... ....||+|+..
T Consensus 331 ~~~~C~ICle~~~~--------------pv~lpCGH~FC~~Ci~~wl~~---~~~~CP~CR~~ 376 (389)
T 2y1n_A 331 TFQLCKICAENDKD--------------VKIEPCGHLMCTSCLTSWQES---EGQGCPFCRCE 376 (389)
T ss_dssp SSSBCTTTSSSBCC--------------EEEETTCCEECHHHHHHHHHH---TCSBCTTTCCB
T ss_pred CCCCCCccCcCCCC--------------eEEeCCCChhhHHHHHHHHhc---CCCCCCCCCCc
Confidence 44789999766533 578999999999999999741 35689999863
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.70 E-value=8.7e-06 Score=74.03 Aligned_cols=46 Identities=7% Similarity=-0.065 Sum_probs=37.5
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
++.+.|+||...+.+. ++++|||+|.-.|++.|.... ...||+|+.
T Consensus 206 ~~~~~c~i~~~~~~dP--------------v~~~~gh~f~~~~i~~~~~~~---~~~cP~~~~ 251 (281)
T 2c2l_A 206 PDYLCGKISFELMREP--------------CITPSGITYDRKDIEEHLQRV---GHFNPVTRS 251 (281)
T ss_dssp CSTTBCTTTCSBCSSE--------------EECSSCCEEETTHHHHHHHHT---CSSCTTTCC
T ss_pred CcccCCcCcCCHhcCC--------------eECCCCCEECHHHHHHHHHHC---CCCCcCCCC
Confidence 5788999999998873 578999999999999998432 234999985
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.61 E-value=3e-05 Score=63.05 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=38.3
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
++.+.|+||...+.+. ++++|||+|-..|++.|... ...||+|+.
T Consensus 12 p~~~~CpI~~~~m~dP--------------V~~~cGhtf~r~~I~~~l~~----~~~cP~~~~ 56 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP--------------VRLPSGTVMDRSIILRHLLN----SPTDPFNRQ 56 (85)
T ss_dssp CTTTBCTTTCSBCSSE--------------EECTTSCEEEHHHHHHHHHH----CSBCTTTCC
T ss_pred chheECcccCchhcCC--------------eECCCCCEECHHHHHHHHhc----CCCCCCCcC
Confidence 5789999999988873 57899999999999999852 578999975
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.59 E-value=5.7e-05 Score=63.42 Aligned_cols=45 Identities=7% Similarity=-0.057 Sum_probs=38.5
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCC-ccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCG-HHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCG-HVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
++.+.|+||...+.+. ++++|| |+|--.|++.|... ...||+|+.
T Consensus 20 p~~~~CpI~~~~m~dP--------------V~~~cG~htf~r~cI~~~l~~----~~~cP~~~~ 65 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP--------------VVLPSSRVTVDRSTIARHLLS----DQTDPFNRS 65 (98)
T ss_dssp CTTTBCTTTCSBCSSE--------------EECTTTCCEEEHHHHHHHTTT----SCBCTTTCS
T ss_pred cHhcCCcCccccccCC--------------eECCCCCeEECHHHHHHHHHh----CCCCCCCCC
Confidence 5789999999988873 578999 99999999999853 578999975
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.54 E-value=1e-05 Score=71.43 Aligned_cols=45 Identities=27% Similarity=0.659 Sum_probs=36.5
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+.+.|.||...|.+. ..+.|||+|+..||+.|.. .....||+|+.
T Consensus 30 ~~~~C~IC~~~~~~p--------------v~~~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~ 74 (141)
T 3knv_A 30 AKYLCSACRNVLRRP--------------FQAQCGHRYCSFCLASILS---SGPQNCAACVH 74 (141)
T ss_dssp GGGBCTTTCSBCSSE--------------EECTTSCEEEHHHHHHHGG---GSCEECHHHHH
T ss_pred cCcCCCCCChhhcCc--------------EECCCCCccCHHHHHHHHh---cCCCCCCCCCC
Confidence 678999999888762 4579999999999999984 23468999974
No 56
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=2.5e-05 Score=61.41 Aligned_cols=40 Identities=23% Similarity=0.538 Sum_probs=31.6
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCcc-chHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHH-FHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHV-FHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.. +++|+|||+ |+.+|++.. ..||+|+.
T Consensus 24 ~~~~C~IC~~~~~~--------------~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~ 64 (75)
T 2ecg_A 24 EEKLCKICMDRNIA--------------IVFVPCGHLVTCKQCAEAV--------DKCPMCYT 64 (75)
T ss_dssp HHHSCSSSCSSCCC--------------BCCSSSCCCCBCHHHHHHC--------SBCTTTCC
T ss_pred CCCCCCcCCCCCCC--------------EEEecCCCHHHHHHHhhCC--------CCCccCCc
Confidence 45689999766543 357899999 999999754 57999985
No 57
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.49 E-value=7.9e-05 Score=61.36 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=36.6
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
.....|.||...+... ..-..|+|.||.+||..|.... ....||+|+.
T Consensus 13 ~~i~~C~IC~~~i~~g-------------~~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr~ 60 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG-------------QSCETCGIRMHLPCVAKYFQSN--AEPRCPHCND 60 (74)
T ss_dssp SSSCBCSSSCCBCSSS-------------EECSSSCCEECHHHHHHHSTTC--SSCCCTTTCS
T ss_pred CCCCcCcchhhHcccC-------------CccCCCCchhhHHHHHHHHHhc--CCCCCCCCcC
Confidence 3667899999998632 1122999999999999999432 2488999985
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.45 E-value=3.8e-05 Score=63.15 Aligned_cols=48 Identities=17% Similarity=0.558 Sum_probs=37.5
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEec-CCccchHhhhhhcCCCCC--CCCCCCCC--CC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLP-CGHHFHDYCLQQITPADQ--TDNPPCIH--CD 756 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLS-CGHVFHAECLEA~TpeSq--k~DPpCPL--Cr 756 (760)
...+.|+||...+.+. ++++ |||+|.-.|++.|..... .....||+ |.
T Consensus 5 ~~~~~CPI~~~~~~dP--------------V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~ 57 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP--------------VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCS 57 (94)
T ss_dssp SSCCBCTTTCSBCSSE--------------EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCC
T ss_pred CcEeECcCcCchhcCC--------------EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCc
Confidence 3668899999888762 4675 999999999999985431 34678999 86
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.22 E-value=8e-05 Score=65.57 Aligned_cols=45 Identities=27% Similarity=0.554 Sum_probs=36.0
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+.+.|+||...|... ..++|||+|+..|++.|.... ...||+|+.
T Consensus 17 ~~~~C~IC~~~~~~p--------------v~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~ 61 (170)
T 3hcs_A 17 SKYECPICLMALREA--------------VQTPCGHRFCKACIIKSIRDA---GHKCPVDNE 61 (170)
T ss_dssp GGGBCTTTCSBCSSE--------------EECTTSCEEEHHHHHHHHHHH---CSBCTTTCC
T ss_pred CCCCCCCCChhhcCc--------------EECCCCCHHHHHHHHHHHHhC---CCCCCCCcc
Confidence 678999999888652 358999999999999997432 237999975
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.00024 Score=56.08 Aligned_cols=41 Identities=24% Similarity=0.623 Sum_probs=32.6
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCcc-chHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHH-FHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHV-FHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
+...|.||..... .+++|+|||+ |..+|++.. ..||+|+..
T Consensus 14 ~~~~C~IC~~~~~--------------~~v~~pCgH~~~C~~C~~~~--------~~CP~CR~~ 55 (68)
T 2ea5_A 14 NSKDCVVCQNGTV--------------NWVLLPCRHTCLCDGCVKYF--------QQCPMCRQF 55 (68)
T ss_dssp CSSCCSSSSSSCC--------------CCEETTTTBCCSCTTHHHHC--------SSCTTTCCC
T ss_pred CCCCCCCcCcCCC--------------CEEEECCCChhhhHHHHhcC--------CCCCCCCcc
Confidence 5678999976432 3689999999 999999953 469999863
No 61
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.11 E-value=0.00028 Score=56.96 Aligned_cols=40 Identities=25% Similarity=0.654 Sum_probs=31.9
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCcc-chHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHH-FHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHV-FHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+. .+++|+|||+ |-.+|++.+. .||+|+.
T Consensus 17 ~~~~C~IC~~~~~--------------~~v~~pCgH~~~C~~C~~~~~--------~CP~Cr~ 57 (79)
T 2yho_A 17 EAMLCMVCCEEEI--------------NSTFCPCGHTVCCESCAAQLQ--------SCPVCRS 57 (79)
T ss_dssp HHTBCTTTSSSBC--------------CEEEETTCBCCBCHHHHTTCS--------BCTTTCC
T ss_pred CCCEeEEeCcccC--------------cEEEECCCCHHHHHHHHHhcC--------cCCCCCc
Confidence 3457999976443 3678999999 9999999874 7999986
No 62
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.04 E-value=0.00024 Score=71.55 Aligned_cols=40 Identities=23% Similarity=0.561 Sum_probs=33.4
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCcc-chHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHH-FHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHV-FHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.||...+.. +.+|+|||+ |+..|+..+ ..||+|+.
T Consensus 294 ~~~~C~IC~~~~~~--------------~v~lpCgH~~fC~~C~~~~--------~~CP~CR~ 334 (345)
T 3t6p_A 294 EERTCKVCMDKEVS--------------VVFIPCGHLVVCQECAPSL--------RKCPICRG 334 (345)
T ss_dssp TTCBCTTTSSSBCC--------------EEEETTCCEEECTTTGGGC--------SBCTTTCC
T ss_pred CCCCCCccCCcCCc--------------eEEcCCCChhHhHHHHhcC--------CcCCCCCC
Confidence 44789999877654 567899999 999999988 56999985
No 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.96 E-value=0.00024 Score=55.06 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=33.8
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEe--cCCcc-chHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVL--PCGHH-FHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVL--SCGHV-FHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
+...|.||.....+ +++| +|||+ |-.+|++.|.. ....||+|+..
T Consensus 7 ~~~~C~IC~~~~~~--------------~~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~ 54 (64)
T 2vje_A 7 AIEPCVICQGRPKN--------------GCIVHGKTGHLMACFTCAKKLKK----RNKPCPVCRQP 54 (64)
T ss_dssp GGSCCTTTSSSCSC--------------EEEEETTEEEEEECHHHHHHHHH----TTCCCTTTCCC
T ss_pred CcCCCCcCCCCCCC--------------EEEECCCCCChhhHHHHHHHHHH----cCCcCCCcCcc
Confidence 56689999764332 3555 99999 67999999883 35689999863
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.91 E-value=0.00023 Score=66.65 Aligned_cols=46 Identities=7% Similarity=-0.075 Sum_probs=37.6
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
++.+.|+||...+.+. ++++|||+|--.|++.|.... ...||+|+.
T Consensus 104 p~~f~CPI~~elm~DP--------------V~~~~Ghtfer~~I~~~l~~~---~~tcP~t~~ 149 (179)
T 2f42_A 104 PDYLCGKISFELMREP--------------CITPSGITYDRKDIEEHLQRV---GHFDPVTRS 149 (179)
T ss_dssp CGGGBCTTTCSBCSSE--------------EECTTSCEEEHHHHHHHHHHT---CSBCTTTCC
T ss_pred cHhhcccCccccCCCC--------------eECCCCCEECHHHHHHHHHhC---CCCCCCCcC
Confidence 5889999999988862 567999999999999998532 236999974
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.83 E-value=0.00032 Score=54.24 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=33.9
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEe--cCCcc-chHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVL--PCGHH-FHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVL--SCGHV-FHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
....|.||.....+ +++| +|||+ |-.+|++.+.. ....||+|+..
T Consensus 6 ~~~~C~IC~~~~~~--------------~~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~ 53 (63)
T 2vje_B 6 LLKPCSLCEKRPRD--------------GNIIHGRTGHLVTCFHCARRLKK----AGASCPICKKE 53 (63)
T ss_dssp GGSBCTTTSSSBSC--------------EEEEETTEEEEEECHHHHHHHHH----TTCBCTTTCCB
T ss_pred cCCCCcccCCcCCC--------------eEEEecCCCCHhHHHHHHHHHHH----hCCcCCCcCch
Confidence 45689999764333 3455 99998 99999999873 34789999863
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.81 E-value=0.00029 Score=57.14 Aligned_cols=52 Identities=21% Similarity=0.417 Sum_probs=36.1
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCC----CCCCCCCCC--CCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPAD----QTDNPPCIH--CDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeS----qk~DPpCPL--Cr~G 758 (760)
....|+||...+...- .+.++.|||.|..+||++..... ......||. |...
T Consensus 4 ~~~~C~IC~~~~~~~~-----------~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQ-----------MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGG-----------EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCccccccc-----------ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4678999987765431 23445799999999998876421 113568999 9753
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0013 Score=65.75 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=38.5
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCC--CCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIH--CDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPL--Cr~ 757 (760)
..-.+|+||...+.+ +|....|||+|-..|++.|-... ....||+ |+.
T Consensus 179 ~~el~CPIcl~~f~D-------------PVts~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~ 228 (267)
T 3htk_C 179 KIELTCPITCKPYEA-------------PLISRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQ 228 (267)
T ss_dssp BCCSBCTTTSSBCSS-------------EEEESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSC
T ss_pred ceeeECcCccCcccC-------------CeeeCCCCCcccHHHHHHHHHhC--CCCCCCcccccC
Confidence 477799999999977 34456999999999999998542 3467999 975
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.22 E-value=0.0011 Score=69.00 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=35.0
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceE--EecCCccchHhhhhhcCCCCCC-------CCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTA--VLPCGHHFHDYCLQQITPADQT-------DNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVA--VLSCGHVFHAECLEA~TpeSqk-------~DPpCPLCr~ 757 (760)
....|+||-...... ..+|... -+.|||.||..||..|...... .--.||.|+.
T Consensus 307 ~~~ECaICys~~l~~--------g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~ 369 (381)
T 3k1l_B 307 EELRCNICFAYRLDG--------GEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369 (381)
T ss_dssp SCCSCSSSCCSSCTT--------CCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCC
T ss_pred CCccCcccceeecCC--------CCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCC
Confidence 567899997665542 1222221 2589999999999999732111 1245999985
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.18 E-value=0.005 Score=48.21 Aligned_cols=46 Identities=26% Similarity=0.546 Sum_probs=32.8
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCC--c---cchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCG--H---HFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCG--H---VFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|-||..... .+ . +++|. | .||.+||+.|.... ....||+|..
T Consensus 5 ~~~~CrIC~~~~~----------~~--l--~~PC~C~gs~~~~H~~Cl~~W~~~~--~~~~C~~C~~ 55 (60)
T 1vyx_A 5 DVPVCWICNEELG----------NE--R--FRACGCTGELENVHRSCLSTWLTIS--RNTACQICGV 55 (60)
T ss_dssp SCCEETTTTEECS----------CC--C--CCSCCCSSGGGSCCHHHHHHHHHHH--TCSBCTTTCC
T ss_pred CCCEeEEeecCCC----------Cc--e--ecCcCCCCchhhhHHHHHHHHHHhC--CCCccCCCCC
Confidence 5668999976411 11 1 68865 4 99999999998543 3578999975
No 70
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.63 E-value=0.017 Score=55.53 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=35.7
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
....|.||...+... ..+. .|+|.||..|++.|... ...+.||.|..
T Consensus 179 ~i~~C~iC~~iv~~g----~~C~---------~C~~~~H~~C~~~~~~~--~~~~~CP~C~~ 225 (238)
T 3nw0_A 179 AVKICNICHSLLIQG----QSCE---------TCGIRMHLPCVAKYFQS--NAEPRCPHCND 225 (238)
T ss_dssp TCCBCTTTCSBCSSC----EECS---------SSCCEECHHHHHHHTTT--CSSCBCTTTCC
T ss_pred CCCcCcchhhHHhCC----cccC---------ccChHHHHHHHHHHHHh--CCCCCCCCCCC
Confidence 477899999999852 1121 29999999999999742 34678999975
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.41 E-value=0.0099 Score=46.44 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=33.3
Q ss_pred cccccccccccCCCcCCccCCCCCCceEEe-cCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 698 YKCDLCNRDLSFASEGQILQPGVRPSTAVL-PCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 698 qtCGICsKdLSERSsGRIsrsndLPVVAVL-SCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+.|+||.+.+.+. +++ +|||+|=-+|+|.|..+. ..||++..
T Consensus 4 ~~CpIs~~~m~dP--------------V~~~~sG~~yer~~I~~~l~~~----~~cP~t~~ 46 (61)
T 2bay_A 4 MLCAISGKVPRRP--------------VLSPKSRTIFEKSLLEQYVKDT----GNDPITNE 46 (61)
T ss_dssp CCCTTTCSCCSSE--------------EEETTTTEEEEHHHHHHHHHHH----SBCTTTCC
T ss_pred EEecCCCCCCCCC--------------EEeCCCCcEEcHHHHHHHHHhC----CCCcCCcC
Confidence 6799999888752 566 899999999999999532 34998864
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=92.03 E-value=0.048 Score=48.41 Aligned_cols=44 Identities=23% Similarity=0.474 Sum_probs=35.1
Q ss_pred cccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 698 YKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 698 qtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
.-|++|+....-. ..+++|.|||--+|.+.|..+ .|-.||.|+.
T Consensus 2 hfC~~C~~Pi~iy-------------gRmIPCkHvFCydCa~~~~~~---~~k~Cp~C~~ 45 (101)
T 3vk6_A 2 HFCDKCGLPIKVY-------------GRMIPCKHVFCYDCAILHEKK---GDKMCPGCSD 45 (101)
T ss_dssp CBCTTTCSBCSEE-------------EEEETTCCEEEHHHHHHHHHT---TCCBCTTTCC
T ss_pred eecCccCCCeEEE-------------eeeccccccHHHHHHHHHHhc---cCCCCcCcCC
Confidence 4588998888775 479999999999999998643 3566999974
No 73
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=74.20 E-value=3.3 Score=30.69 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=22.7
Q ss_pred ecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 727 LPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 727 LSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
-.|...||..||.--..+.-+.+-.|+.|..
T Consensus 19 d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 19 DECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp TTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 3688999999997433334445788999975
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=72.39 E-value=2.6 Score=33.88 Aligned_cols=49 Identities=18% Similarity=0.409 Sum_probs=32.8
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
....|.+|.+. +. .+-==.|...||..||.-.....-..+-.|+.|...
T Consensus 11 ~~~~C~vC~~~------~~--------ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG------TD--------VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC------TT--------CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC------Ce--------EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34569999742 11 222335899999999975554444567889999754
No 75
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=71.35 E-value=3.2 Score=32.82 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=34.7
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
....|.+|.+.-... . .+.-=.|.--||..||.-........+-.||.|..
T Consensus 17 ~~~~C~~C~~~~~~~---~--------mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDDGS---P--------MIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCSSC---C--------EEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCCCC---C--------EEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 456799998763211 1 12223599999999998766555456788999963
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=69.57 E-value=2.5 Score=37.14 Aligned_cols=30 Identities=33% Similarity=0.637 Sum_probs=20.9
Q ss_pred cCCccchHhhhhhcCC------------CCCCCCCCCCCCCC
Q 004343 728 PCGHHFHDYCLQQITP------------ADQTDNPPCIHCDM 757 (760)
Q Consensus 728 SCGHVFHAECLEA~Tp------------eSqk~DPpCPLCr~ 757 (760)
.|+-|||.-||+.+-- -....--+|+.|-.
T Consensus 34 vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 34 VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred cccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 5899999999999711 11224567888853
No 77
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=63.42 E-value=6.5 Score=32.99 Aligned_cols=49 Identities=22% Similarity=0.567 Sum_probs=29.3
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHC 755 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLC 755 (760)
....|.+|...-... ..+.=-.|+..||..||..........+-.|+.|
T Consensus 6 ~~~~C~~C~~~g~~~-----------~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 6 SGANCAVCDSPGDLL-----------DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CCSCBTTTCCCCCTT-----------TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCCcCCCCCCCCc-----------CCeECCCCCCCcChHHhCCccccccccCccCCcC
Confidence 456799997652110 1233357899999999987664333344444433
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.99 E-value=2.2 Score=32.91 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=36.1
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCC-CCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQ-TDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSq-k~DPpCPLCr~ 757 (760)
....|++|.+..... + .-|.--.|..-||..|+.-...... ...-.|+.|+.
T Consensus 5 e~~~C~~C~~~~~~~--~--------~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAAD--E--------FWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSS--S--------CEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCC--C--------CEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 567899998875321 1 1345557999999999976554332 36788999964
No 79
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=59.97 E-value=4.6 Score=32.59 Aligned_cols=33 Identities=21% Similarity=0.595 Sum_probs=24.3
Q ss_pred CcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhh
Q 004343 697 GYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQ 740 (760)
Q Consensus 697 gqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA 740 (760)
...|.||..+.... ++..-|.|+|.|-..||+.
T Consensus 3 e~~C~~C~~~~~~~-----------av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQD-----------AVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCB-----------CCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCC-----------ceEECCcCChHHhHHHCHH
Confidence 35799998653222 1334499999999999998
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=56.68 E-value=4.6 Score=31.49 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=23.5
Q ss_pred cCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 728 PCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 728 SCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
.|-..||..||.--....-..+-.|+.|...
T Consensus 26 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 26 TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4888999999996444444567889999754
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=53.37 E-value=6.1 Score=30.82 Aligned_cols=48 Identities=21% Similarity=0.511 Sum_probs=32.8
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
....|.+|.+. +. .+.=-.|--.||..||.--..+.-+.+-.||.|..
T Consensus 10 ~~~~C~vC~~~------g~--------ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG------GE--------IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC------SS--------EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC------Cc--------EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34579999863 11 22223578899999999754444556888999975
No 82
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=51.62 E-value=12 Score=31.62 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
.+..+| ||.+.-.... .|.==.|.-.||..|+.-... ....+-.||.|..
T Consensus 26 ~d~vrC-iC~~~~~~~~-----------mi~Cd~C~~w~H~~C~~~~~~-~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGY-----------MICCDKCSVWQHIDCMGIDRQ-HIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSC-----------EEEBTTTCBEEETTTTTCCTT-SCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCc-----------EEEcCCCCCcCcCcCCCCCcc-CCCCCEECCCCcC
Confidence 466788 8976533221 233335899999999965332 2224678999974
No 83
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=51.15 E-value=8.6 Score=31.23 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=34.5
Q ss_pred CCCCCCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCC
Q 004343 691 RFPQPIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCD 756 (760)
Q Consensus 691 qSVSPdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr 756 (760)
++.......|.+|.+.-+..... .+.==.|.-.||..||.-.. .-+.+-.|+.|.
T Consensus 10 ~~~~~~~~~C~vC~~~~s~~~~~---------ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~ 64 (71)
T 2ku3_A 10 QSLIDEDAVCSICMDGESQNSNV---------ILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCL 64 (71)
T ss_dssp CCCCCSSCSCSSSCCCCCCSSSC---------EEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHH
T ss_pred ccCCCCCCCCCCCCCCCCCCCCC---------EEECCCCCCccccccCCCCc--CCCCCcCCccCc
Confidence 34444667899998764333211 11222688899999998542 233577888885
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=50.50 E-value=5 Score=33.69 Aligned_cols=47 Identities=21% Similarity=0.513 Sum_probs=28.8
Q ss_pred ccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCC
Q 004343 699 KCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCD 756 (760)
Q Consensus 699 tCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr 756 (760)
.|.+|.+.-.+ ...+.--.|...||..||.-.....-+.+-.||.|.
T Consensus 56 ~C~~C~~~~~~-----------~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 102 (111)
T 2ysm_A 56 VCQNCKQSGED-----------SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCR 102 (111)
T ss_dssp CCTTTCCCSCC-----------TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHH
T ss_pred cccccCccCCC-----------CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCc
Confidence 67777764322 124445578889999999854333333456676664
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.29 E-value=2.2 Score=32.52 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=32.5
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
....|.+|.+. +. .+.--.|...||..||.--....-+.+-.||.|..
T Consensus 8 ~~~~C~vC~~~------g~--------ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS------GQ--------LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS------SC--------CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC------Ce--------EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45679999863 11 23334788999999999544344445778998864
No 86
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.55 E-value=7.7 Score=30.78 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=35.0
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
.....| +|.+.... + -.-|.-=.|..-||..|+.-...+.......||.|..
T Consensus 14 ~~~~~C-~C~~~~~~---g-------~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDD---G-------ERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCC---S-------SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCC---C-------CcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 356789 79876421 1 0124444699999999998765544557888998863
No 87
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.97 E-value=7.7 Score=32.58 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=31.9
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
+...|.+|.+.=... . .+.-=.|...||..||.--....-+.+-.||.|..
T Consensus 15 ~~~~C~vC~~~~~~~---~--------ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDEDD---K--------LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGGG---G--------CEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCCC---C--------EEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 445799998753211 1 12222588999999998433333445778999864
No 88
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=43.16 E-value=4 Score=31.48 Aligned_cols=54 Identities=19% Similarity=0.411 Sum_probs=33.7
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCC--C-CCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPA--D-QTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~Tpe--S-qk~DPpCPLCr~G 758 (760)
....|.+|.+.-.+... ..+-=-.|.-.||..||.--... . ...+-.|+.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~---------~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPN---------EMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTB---------CEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCC---------CEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45679999875433211 12333468889999999863221 1 3457789888654
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=42.79 E-value=9.9 Score=32.36 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=24.2
Q ss_pred CcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhh
Q 004343 697 GYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQ 740 (760)
Q Consensus 697 gqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA 740 (760)
...|.+|...=.....+ ..-..+.=-.|+..||..||+.
T Consensus 5 ~~~C~~C~~~~~~~~~g-----~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 5 IPICSFCLGTKEQNREK-----KPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CSSBTTTCCCTTCCTTS-----CCCCCEECTTTCCEECHHHHTC
T ss_pred CccccccCCchhhCcCC-----CchhceEhhhcCCCCCCchhcC
Confidence 35799997653322111 1123455567999999999963
No 90
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=41.25 E-value=6.2 Score=30.32 Aligned_cols=46 Identities=22% Similarity=0.426 Sum_probs=30.8
Q ss_pred CcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCC
Q 004343 697 GYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCD 756 (760)
Q Consensus 697 gqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr 756 (760)
...|.+|.+. +. .+.==.|.-.||..||.--....-..+-.||.|.
T Consensus 5 ~~~C~vC~~~------g~--------ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~ 50 (60)
T 2puy_A 5 EDFCSVCRKS------GQ--------LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 50 (60)
T ss_dssp CSSCTTTCCC------SS--------CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHH
T ss_pred CCCCcCCCCC------Cc--------EEEcCCCCcCEECCcCCCCcCCCCCCceEChhcc
Confidence 4579999863 11 2333368899999999954333444577898885
No 91
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=40.61 E-value=13 Score=31.85 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=31.7
Q ss_pred CcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 697 GYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 697 gqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
...|.+|.+. +. .+-=-.|--+||..||.--....-..+-.|+.|...
T Consensus 25 ~~~C~vC~~~------g~--------LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 25 ATICRVCQKP------GD--------LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSCCSSSCSS------SC--------CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCcCcCcCCC------CC--------EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3479999864 11 122225777899999976554445567889999743
No 92
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=40.10 E-value=15 Score=29.51 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=21.7
Q ss_pred cCCccchHhhhhhcCCCCCCC-CCCCCCCCC
Q 004343 728 PCGHHFHDYCLQQITPADQTD-NPPCIHCDM 757 (760)
Q Consensus 728 SCGHVFHAECLEA~TpeSqk~-DPpCPLCr~ 757 (760)
.|...||..||.--..+.-+. +-.||.|..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 478999999998433333334 788999975
No 93
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=38.43 E-value=16 Score=30.51 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=31.7
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
....|.+|.+.-+..... .+.=-.|.-.||..||.-.. .-..+-.|+.|..
T Consensus 24 ~~~~C~vC~~~~s~~~~~---------ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~ 74 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNV---------ILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCSSCCSSSSCSEEE---------EEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCcCCcCCCCCCCCCCC---------EEECCCCCchhhcccCCCCc--cCCCceECccccC
Confidence 456899998754332211 11122577899999998542 2235778988853
No 94
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.90 E-value=16 Score=29.48 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=33.2
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEe--cCCccchHhhhhhcCCC-----CCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVL--PCGHHFHDYCLQQITPA-----DQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVL--SCGHVFHAECLEA~Tpe-----Sqk~DPpCPLCr~ 757 (760)
....| +|.+...... -|+-= .|..-||..|+--.... .......||.|..
T Consensus 15 ~~~~C-iC~~~~~~g~-----------MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 15 IKVRC-VCGNSLETDS-----------MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCC-SSCCCCCCSC-----------EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCEEe-ECCCcCCCCC-----------EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 56678 8998743221 23333 79999999999765543 2345788999864
No 95
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=37.85 E-value=9.8 Score=26.43 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=19.7
Q ss_pred cccccccccccCCCcCCccCCCCCCceEEecCCccchHhhh
Q 004343 698 YKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCL 738 (760)
Q Consensus 698 qtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECL 738 (760)
..|+.|+|.+-.-- .|..=|.+||..|+
T Consensus 4 ~~C~~C~k~Vy~~E-------------k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTE-------------KVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGG-------------CCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecce-------------eEEECCeEecccCC
Confidence 47999999874321 14455889999985
No 96
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.71 E-value=13 Score=30.60 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=21.6
Q ss_pred cCCccchHhhhhhcCCCCCCC-CCCCCCCCC
Q 004343 728 PCGHHFHDYCLQQITPADQTD-NPPCIHCDM 757 (760)
Q Consensus 728 SCGHVFHAECLEA~TpeSqk~-DPpCPLCr~ 757 (760)
.|...||..||.--....-.. +-.||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688999999998533333333 788999974
No 97
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=35.31 E-value=8 Score=28.56 Aligned_cols=15 Identities=27% Similarity=0.680 Sum_probs=12.6
Q ss_pred CCCcccccccccccC
Q 004343 695 PIGYKCDLCNRDLSF 709 (760)
Q Consensus 695 PdgqtCGICsKdLSE 709 (760)
..++.|+||.++|..
T Consensus 3 ~EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 3 SEGFICPQCMKSLGS 17 (34)
T ss_dssp SEEEECTTTCCEESS
T ss_pred CcccCCcHHHHHcCC
Confidence 467999999999865
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=35.11 E-value=7.3 Score=30.60 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=32.0
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
....|.+|.+. +. .+.-=.|--.||..||.--....-..+-.|+.|..+
T Consensus 7 ~~~~C~vC~~~------g~--------ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG------GE--------LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC------SS--------CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC------CC--------EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45679999853 11 233336888999999985333334467789988643
No 99
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=34.38 E-value=11 Score=30.11 Aligned_cols=51 Identities=18% Similarity=0.445 Sum_probs=32.4
Q ss_pred CCCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCC-----CCCCCCCCCCCC
Q 004343 695 PIGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPAD-----QTDNPPCIHCDM 757 (760)
Q Consensus 695 PdgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeS-----qk~DPpCPLCr~ 757 (760)
+....| +|.+...... -|.--.|..-||..|+.-..... ...+-.|+.|..
T Consensus 14 ~~~~~C-~C~~~~~~~~-----------MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRF-----------MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TTCCCS-TTCCCCCSSC-----------EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCCEE-ECCCccCCCC-----------EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 345678 8987654211 24444699999999996543221 235778998863
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=34.04 E-value=19 Score=30.55 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=22.4
Q ss_pred cCCccchHhhhhhcCCCCCCCCCCCCCCCC
Q 004343 728 PCGHHFHDYCLQQITPADQTDNPPCIHCDM 757 (760)
Q Consensus 728 SCGHVFHAECLEA~TpeSqk~DPpCPLCr~ 757 (760)
.|-..||..||.--..+.-+.+-.|+.|+.
T Consensus 82 ~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 82 SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588999999997544444455778999974
No 101
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.27 E-value=32 Score=26.65 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhh
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQ 739 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLE 739 (760)
...+|.-|.+.+..+ .|..-+.+||.+|+.
T Consensus 14 ~~~~C~~C~~~I~~~--------------~~~a~~~~~H~~CF~ 43 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV--------------FVKLRDRHRHPECYV 43 (79)
T ss_dssp CCCCCSSSCCCCCSS--------------CEECSSCEECTTTTS
T ss_pred CCCccccCCCCccCc--------------EEEECcceeCcCcCe
Confidence 456899998887652 245568899988864
No 102
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=32.03 E-value=24 Score=28.54 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=20.8
Q ss_pred CC-ccchHhhhhhcCCCCCCCCCCCCCCCCCC
Q 004343 729 CG-HHFHDYCLQQITPADQTDNPPCIHCDMHE 759 (760)
Q Consensus 729 CG-HVFHAECLEA~TpeSqk~DPpCPLCr~GE 759 (760)
|. ..||..|+.-.. ....+-.||.|....
T Consensus 37 C~~~wfH~~Cvgl~~--~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 37 CSIEWFHFACVGLTT--KPRGKWFCPRCSQES 66 (71)
T ss_dssp CSCCCEETTTTTCSS--CCSSCCCCTTTSSCS
T ss_pred CCCccEecccCCcCc--CCCCCEECCCCCccc
Confidence 55 689999998433 223578899998754
No 103
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=30.88 E-value=13 Score=31.79 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=29.6
Q ss_pred ccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCC
Q 004343 699 KCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCD 756 (760)
Q Consensus 699 tCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr 756 (760)
.|.+|.+.-.+. ..+.=-.|...||..||.--....-..+-.|+.|.
T Consensus 60 ~C~~C~~~~~~~-----------~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 60 SCILCGTSENDD-----------QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp CCTTTTCCTTTT-----------TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred ccCcccccCCCC-----------ceEEcCCCCccccccccCCCccCCCCCCeECcccc
Confidence 677887643221 12333368889999999954434444577788885
No 104
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=30.35 E-value=19 Score=35.33 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=19.6
Q ss_pred cCCccchHhhhhhcCCCCCCC-CCCCCCCCC
Q 004343 728 PCGHHFHDYCLQQITPADQTD-NPPCIHCDM 757 (760)
Q Consensus 728 SCGHVFHAECLEA~TpeSqk~-DPpCPLCr~ 757 (760)
.|...||..||.--....-.. +-.||.|..
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 588999999998433333333 788999974
No 105
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.34 E-value=7.7 Score=32.26 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=32.8
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCC----CCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPA----DQTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~Tpe----Sqk~DPpCPLCr~ 757 (760)
....|.+|.+.-.... +. .+-==.|...||..||.--... .-..+-.|+.|..
T Consensus 15 ~~~~C~vC~~~~~~~~-~~--------ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 15 MGLACVVCRQMTVASG-NQ--------LVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HCCSCSSSCCCCCCTT-CC--------EEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCcCCCCCCCCCCCC-Cc--------eEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 3557999987533211 11 1111258899999999865432 3456778988853
No 106
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=30.31 E-value=22 Score=27.42 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=19.6
Q ss_pred EecCCccchHhhhhhcCCCCCC-CCCCCCCCCCC
Q 004343 726 VLPCGHHFHDYCLQQITPADQT-DNPPCIHCDMH 758 (760)
Q Consensus 726 VLSCGHVFHAECLEA~TpeSqk-~DPpCPLCr~G 758 (760)
=..||++|.-+=-+. |++.+. .|-.||+|..+
T Consensus 7 C~vCGyvyd~~~Gd~-t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 7 CNVCGYEYDPAEHDN-VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp ETTTCCEECGGGGTT-CCGGGSCTTCBCTTTCCB
T ss_pred CCCCCeEEeCCcCCC-cchhhCCCCCcCcCCCCc
Confidence 356888887432111 565554 34689999854
No 107
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.09 E-value=27 Score=27.71 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=19.5
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhh
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQ 739 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLE 739 (760)
...+|.-|.+.+... .|..-|..||.+|+.
T Consensus 24 ~~~~C~~C~~~I~~~--------------~v~a~~~~~H~~CF~ 53 (90)
T 2dar_A 24 RTPMCAHCNQVIRGP--------------FLVALGKSWHPEEFN 53 (90)
T ss_dssp CCCBBSSSCCBCCSC--------------EEEETTEEECTTTCB
T ss_pred CCCCCccCCCEecce--------------EEEECCccccccCCc
Confidence 456788888877432 244567788877764
No 108
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=29.02 E-value=15 Score=29.39 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=33.9
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCCCCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQTDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSqk~DPpCPLCr~G 758 (760)
+...| +|.+.-.... -|.--.|..-||..|+.-.... ....-.||.|...
T Consensus 18 ~~~~C-iC~~~~~~~~-----------MIqCd~C~~WfH~~Cvgi~~~~-~~~~~~C~~C~~s 67 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRP-----------MIECNECHTWIHLSCAKIRKSN-VPEVFVCQKCRDS 67 (68)
T ss_dssp TCCCS-TTCCCCTTCC-----------EEECTTTCCEEETTTTTCCTTS-CCSSCCCHHHHTC
T ss_pred CceEe-ECCCcCCCCC-----------EEECCCCCccccccccCcCccc-CCCcEECCCCCCC
Confidence 56788 9987543221 2444569999999999765542 2357789998753
No 109
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.02 E-value=29 Score=29.70 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=20.9
Q ss_pred CC-ccchHhhhhhcCCCCCCCCCCCCCCCCCC
Q 004343 729 CG-HHFHDYCLQQITPADQTDNPPCIHCDMHE 759 (760)
Q Consensus 729 CG-HVFHAECLEA~TpeSqk~DPpCPLCr~GE 759 (760)
|. .-||..|+.-.. ....+--||.|....
T Consensus 57 C~~~WfH~~CVgl~~--~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 57 CSIEWFHFACVGLTT--KPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCCCSTTTTCSS--CCCSSCCCTTTCCCC
T ss_pred CCCCCEecccCCcCc--CCCCCEECcCccCcC
Confidence 66 689999998433 223578899998754
No 110
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=27.99 E-value=26 Score=32.14 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=22.5
Q ss_pred cCCccchHhhhhhcCCC-------CCCCCCCCCCCCC
Q 004343 728 PCGHHFHDYCLQQITPA-------DQTDNPPCIHCDM 757 (760)
Q Consensus 728 SCGHVFHAECLEA~Tpe-------Sqk~DPpCPLCr~ 757 (760)
.|--+||.+||..-... ....+-.|+.|..
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 68889999999954431 2356889999975
No 111
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=27.50 E-value=10 Score=33.57 Aligned_cols=51 Identities=16% Similarity=0.384 Sum_probs=32.0
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCC-CCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPAD-QTDNPPCIHCDM 757 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeS-qk~DPpCPLCr~ 757 (760)
....| +|.+.-.. .+. .+.-=.|.-.||..|+.-...+. ...+-.||.|..
T Consensus 7 ~~~~C-~C~~~~~~--~~~--------mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDE--SKF--------YIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCT--TSC--------EEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCC--CCC--------EeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 45678 99876321 111 23334699999999996433221 245778999964
No 112
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.72 E-value=22 Score=28.12 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=16.4
Q ss_pred CcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhh
Q 004343 697 GYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQ 739 (760)
Q Consensus 697 gqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLE 739 (760)
..+|.-|.+.+..+ .|..-+.+||.+|+.
T Consensus 25 ~~~C~~C~~~I~~~--------------~~~a~~~~~H~~CF~ 53 (89)
T 1x64_A 25 MPLCDKCGSGIVGA--------------VVKARDKYRHPECFV 53 (89)
T ss_dssp CCBCTTTCCBCCSC--------------CEESSSCEECTTTCC
T ss_pred CCCcccCCCEeccc--------------EEEECCceECccCCE
Confidence 45677776665542 134456667766643
No 113
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=26.04 E-value=4.4 Score=34.80 Aligned_cols=52 Identities=23% Similarity=0.459 Sum_probs=32.3
Q ss_pred CcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCC------CCCCCCCCCCCCC
Q 004343 697 GYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPA------DQTDNPPCIHCDM 757 (760)
Q Consensus 697 gqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~Tpe------Sqk~DPpCPLCr~ 757 (760)
.+.|++|.+...... ..|... + .|---||.+|..-.... .....-.||.|..
T Consensus 3 ~~~C~iC~~p~~~~~-~mi~Cd-d-------~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQ-DAILCE-A-------SCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTTS-CEEECT-T-------TTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCCC-CEEEec-C-------CcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 468999999875421 112222 1 78999999998644321 1124667888864
No 114
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.23 E-value=29 Score=26.02 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=7.1
Q ss_pred Cccccccccccc
Q 004343 697 GYKCDLCNRDLS 708 (760)
Q Consensus 697 gqtCGICsKdLS 708 (760)
...|.-|.+.+.
T Consensus 5 ~~~C~~C~~~I~ 16 (70)
T 2d8x_A 5 SSGCHQCGEFII 16 (70)
T ss_dssp SSBCSSSCCBCC
T ss_pred CCcCccCCCEec
Confidence 445666666554
No 115
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=25.05 E-value=28 Score=28.75 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=20.5
Q ss_pred cCCccchHhhhhhcCCCCCCCC-CCCCCCCC
Q 004343 728 PCGHHFHDYCLQQITPADQTDN-PPCIHCDM 757 (760)
Q Consensus 728 SCGHVFHAECLEA~TpeSqk~D-PpCPLCr~ 757 (760)
.|...||..||.-.....-..+ =.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4788899999985433333334 78999974
No 116
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.25 E-value=35 Score=26.01 Aligned_cols=31 Identities=32% Similarity=0.844 Sum_probs=18.7
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhh
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQ 739 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLE 739 (760)
...+|..|.+.+.... .|..-|.+||.+|+.
T Consensus 8 ~~~~C~~C~~~I~~~~-------------~v~a~~~~~H~~CF~ 38 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAE-------------KVSSLGKDWHKFCLK 38 (76)
T ss_dssp CCCBCTTTCCBCCTTT-------------EEEETTEEEETTTCB
T ss_pred CCCCCcCCCCEeECCe-------------EEEECCeEeeCCCCC
Confidence 3457777777766321 234557777777753
No 117
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=23.80 E-value=13 Score=28.02 Aligned_cols=48 Identities=19% Similarity=0.397 Sum_probs=30.6
Q ss_pred ccccccccccCCCcCCccCCCCCCceEEe-cCCccchHhhhhhcCCCCCCCCCCCCCCC
Q 004343 699 KCDLCNRDLSFASEGQILQPGVRPSTAVL-PCGHHFHDYCLQQITPADQTDNPPCIHCD 756 (760)
Q Consensus 699 tCGICsKdLSERSsGRIsrsndLPVVAVL-SCGHVFHAECLEA~TpeSqk~DPpCPLCr 756 (760)
.|.+|.+..... ..-|.-- .|.--||..|+.-........+-.||.|+
T Consensus 4 ~cc~C~~p~~~~----------~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDK----------VDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTT----------CCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCC----------CcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477787765321 1234455 78889999998765443333677898884
No 118
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.18 E-value=27 Score=29.97 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=21.9
Q ss_pred CcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhh
Q 004343 697 GYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQ 739 (760)
Q Consensus 697 gqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLE 739 (760)
..+|.-|.+.+..+. .|..-|..||.+|+.
T Consensus 61 ~~~C~~C~~~I~~~~-------------~v~a~~~~wH~~CF~ 90 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF-------------LLYAMDSYWHSRCLK 90 (123)
T ss_dssp CSBBSSSSSBCCSSS-------------EEEETTEEEETTTSB
T ss_pred CCcCcCCCCCcCCcE-------------EEEeCCcEEcccccC
Confidence 468999998877542 355678899988864
No 119
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.11 E-value=37 Score=26.93 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=7.7
Q ss_pred CcccccccccccC
Q 004343 697 GYKCDLCNRDLSF 709 (760)
Q Consensus 697 gqtCGICsKdLSE 709 (760)
..+|.-|.+.+..
T Consensus 15 ~~~C~~C~~~I~~ 27 (91)
T 2d8y_A 15 RETCVECQKTVYP 27 (91)
T ss_dssp SCBCTTTCCBCCT
T ss_pred CCcCccCCCccCC
Confidence 4566666666543
No 120
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.63 E-value=40 Score=26.31 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=8.4
Q ss_pred CCccccccccccc
Q 004343 696 IGYKCDLCNRDLS 708 (760)
Q Consensus 696 dgqtCGICsKdLS 708 (760)
...+|.-|.+.+.
T Consensus 14 ~~~~C~~C~~~I~ 26 (79)
T 2cor_A 14 GKYICQKCHAIID 26 (79)
T ss_dssp CCCBCTTTCCBCC
T ss_pred CCCCCccCCCEec
Confidence 4456777777665
No 121
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.07 E-value=35 Score=25.44 Aligned_cols=11 Identities=18% Similarity=0.685 Sum_probs=5.7
Q ss_pred ccccccccccc
Q 004343 698 YKCDLCNRDLS 708 (760)
Q Consensus 698 qtCGICsKdLS 708 (760)
.+|.-|.+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (70)
T 2d8z_A 6 SGCVQCKKPIT 16 (70)
T ss_dssp CBCSSSCCBCC
T ss_pred CCCcccCCeec
Confidence 34555555543
No 122
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.83 E-value=42 Score=25.26 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=7.2
Q ss_pred CcccccccccccC
Q 004343 697 GYKCDLCNRDLSF 709 (760)
Q Consensus 697 gqtCGICsKdLSE 709 (760)
..+|.-|.+.+..
T Consensus 5 ~~~C~~C~~~I~~ 17 (72)
T 1x4l_A 5 SSGCAGCTNPISG 17 (72)
T ss_dssp SCSBTTTTBCCCC
T ss_pred CCCCcCCCccccC
Confidence 3456666665553
No 123
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.41 E-value=38 Score=25.31 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=6.7
Q ss_pred Cccccccccccc
Q 004343 697 GYKCDLCNRDLS 708 (760)
Q Consensus 697 gqtCGICsKdLS 708 (760)
..+|.-|.+.+.
T Consensus 5 ~~~C~~C~~~I~ 16 (69)
T 2cur_A 5 SSGCVKCNKAIT 16 (69)
T ss_dssp CCCCSSSCCCCC
T ss_pred cCCCcccCCEeC
Confidence 345666666554
No 124
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.21 E-value=37 Score=25.44 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=5.1
Q ss_pred ccccccccccc
Q 004343 698 YKCDLCNRDLS 708 (760)
Q Consensus 698 qtCGICsKdLS 708 (760)
.+|..|.+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (72)
T 1x61_A 6 SGCGGCGEDVV 16 (72)
T ss_dssp CCCSSSCSCCC
T ss_pred CCCccCCCccC
Confidence 34555554443
No 125
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.19 E-value=26 Score=32.81 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=14.0
Q ss_pred eEEecCCccchHhhhhhcCCCCCCCC-CCCCCCCCC
Q 004343 724 TAVLPCGHHFHDYCLQQITPADQTDN-PPCIHCDMH 758 (760)
Q Consensus 724 VAVLSCGHVFHAECLEA~TpeSqk~D-PpCPLCr~G 758 (760)
-.-..|||+|-. .. -.||+|...
T Consensus 172 ~~C~~CG~i~~g------------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 172 HLCPICGYIHKG------------EDFEKCPICFRP 195 (202)
T ss_dssp EECSSSCCEEES------------SCCSBCTTTCCB
T ss_pred EEECCCCCEEcC------------cCCCCCCCCCCC
Confidence 344567888642 12 369999754
No 126
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.72 E-value=27 Score=26.93 Aligned_cols=12 Identities=42% Similarity=0.980 Sum_probs=5.8
Q ss_pred Cccccccccccc
Q 004343 697 GYKCDLCNRDLS 708 (760)
Q Consensus 697 gqtCGICsKdLS 708 (760)
..+|..|.+.+.
T Consensus 7 ~~~C~~C~~~I~ 18 (81)
T 1a7i_A 7 GNKCGACGRTVY 18 (81)
T ss_dssp -CBCSSSCCBCS
T ss_pred CCcCcCcCcccc
Confidence 345555555543
No 127
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.65 E-value=36 Score=26.22 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCCCCCCccccccccccc-CCCcCCccCCCCCCceEEecCCccchHhhhhhcCCC
Q 004343 691 RFPQPIGYKCDLCNRDLS-FASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPA 744 (760)
Q Consensus 691 qSVSPdgqtCGICsKdLS-ERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~Tpe 744 (760)
+...++-++|..|.+.|. ... -.+.=|.+|+..|-+.+..+
T Consensus 25 ~~wH~~CF~C~~C~~~L~~~~~-------------f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 25 KHYHPSCALCVRCGQMFAEGEE-------------MYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CCBCTTTSCCSSSCCCCCSSCC-------------CEEETTEEECTTHHHHTSSS
T ss_pred CCCCCCcCEeCCCCCCCCCCCe-------------eEeeCCEEEChHHChHhhcc
Confidence 344556667777777776 221 12223456677777766654
No 128
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.48 E-value=25 Score=28.22 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=33.0
Q ss_pred CCcccccccccccCCCcCCccCCCCCCceEEecCCccchHhhhhhcCCCCC-CCCCCCCCCCCC
Q 004343 696 IGYKCDLCNRDLSFASEGQILQPGVRPSTAVLPCGHHFHDYCLQQITPADQ-TDNPPCIHCDMH 758 (760)
Q Consensus 696 dgqtCGICsKdLSERSsGRIsrsndLPVVAVLSCGHVFHAECLEA~TpeSq-k~DPpCPLCr~G 758 (760)
....| +|.+.-... + .-|.--.|..-||..|+.-...... ...-.|+.|...
T Consensus 11 ~~~~C-~C~~~~d~~--~--------~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVN--H--------FMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSS--S--------CEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCC--C--------ceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 44567 898765211 1 1244446999999999975443222 357889999854
Done!