BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004346
(760 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA +GH +VV L+E + + ++ G T LHLAA G++E+ + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 150 PKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAA 203
V A++K+ TPL LAA NG L D ++ + NG T LH A
Sbjct: 59 AD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLA 108
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCM 145
K+ T LHLAA +GH +VV L+E + + ++ G T LHLAA G++E+ + +
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 146 ASKDPKLVGARNKDSETPLFLAALNG 171
V A++K+ TPL LAA NG
Sbjct: 88 LEAGAD-VNAKDKNGRTPLHLAARNG 112
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 126 GNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHD 185
G T LHLAA G++E+ + + V A++K+ TPL LAA NG L D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 186 KDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILA 238
++ + NG T LH A + + ++ D VN ++NG +PLH+ A
Sbjct: 61 VNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAA 109
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCM 145
K+ T LHLAA +GH +VV L+E + + ++ G T LHLAA G++E+ + +
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 448 QSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
+ + TPL +A + G LE+V+ +L+A + +D NG+ + LA + + +LLL+
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 508 KKMIMENAFRKLDNQGNSALHYAA 531
+ D G + LH AA
Sbjct: 90 AGADVNAK----DKNGRTPLHLAA 109
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A + G LE+V+ +L+A + +D NG+ + LA + + +LLL+ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 514 NAFRKLDNQGNSALHYAA 531
D G + LH AA
Sbjct: 63 AK----DKNGRTPLHLAA 76
Score = 32.7 bits (73), Expect = 0.87, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 448 QSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
+ + TPL +A + G LE+V+ +L+A + +D NG+ + LA + + +LLL+
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 21/152 (13%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKITKSED---TALHLAAASGHSDVVCRLVETMGE 113
L E+A G+ D + E+ A + S+ T LHLAA +GH +VV +L+ + G
Sbjct: 8 LIEAAENGNKDRVKDLLENG-----ADVNASDSDGKTPLHLAAENGHKEVV-KLLLSQGA 61
Query: 114 NESNILKIQNNRGNTALHLAAALGNVEMCRCMASK--DPKLVGARNKDSETPLFLAALNG 171
+ + +++ G T LHLAA G+ E+ + + S+ DP A++ D +TPL LAA NG
Sbjct: 62 DPN----AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN---AKDSDGKTPLHLAAENG 114
Query: 172 KKAAFLCLHFLSHDKDSSLGRKSNGDTILHAA 203
K L D ++S S+G T L A
Sbjct: 115 HKEVVKLLLSQGADPNTS---DSDGRTPLDLA 143
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 153 VGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212
V A + D +TPL LAA NG K L LS D + + S+G T LH A + +
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLL--LSQGADPN-AKDSDGKTPLHLAAENGHKEVV 86
Query: 213 FHIIRCYPDLVNCVNENGLSPLHILA 238
++ D N + +G +PLH+ A
Sbjct: 87 KLLLSQGAD-PNAKDSDGKTPLHLAA 111
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 421 GARPVPENTETSQKNIV---LSTPEKKNTQQSRRKETPLLIATKTGVLEIVEKILD--AF 475
G P+ E K +V LS N + S K TPL +A + G E+V+ +L A
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEVVKLLLSQGAD 95
Query: 476 PVAIQDEDANGKNVVLLAVEHRQTHIYELLL 506
P A +D++GK + LA E+ + +LLL
Sbjct: 96 PNA---KDSDGKTPLHLAAENGHKEVVKLLL 123
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 454 TPLLIATKTGVLEIVEKILD--AFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMI 511
TPL +A + G E+V+ +L A P A +D++GK + LA E+ + +LLL +
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
Query: 512 MENAFRKLDNQGNSALHYAA 531
NA D+ G + LH AA
Sbjct: 96 -PNAK---DSDGKTPLHLAA 111
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA +GH +VV L+E + + ++ G T LHLAA G++E+ + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 150 PKLVGARNKDSETPLFLAALNG 171
V A++K+ TPL LAA NG
Sbjct: 59 AD-VNAKDKNGRTPLHLAARNG 79
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 126 GNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHD 185
G T LHLAA G++E+ + + V A++K+ TPL LAA NG L D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 186 KDSSLGRKSNGDTILHAA 203
++ + NG T LH A
Sbjct: 61 VNA---KDKNGRTPLHLA 75
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCM 145
K+ T LHLAA +GH +VV L+E + + ++ G T LHLAA G++E+ + +
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A + G LE+V+ +L+A + +D NG+ + LA + + +LLL+ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 514 NAFRKLDNQGNSALHYAA 531
D G + LH AA
Sbjct: 63 AK----DKNGRTPLHLAA 76
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 159 DSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRC 218
+ TPL LAA NG L D ++ + NG T LH A + + ++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 219 YPDLVNCVNENGLSPLHILA 238
D VN ++NG +PLH+ A
Sbjct: 58 GAD-VNAKDKNGRTPLHLAA 76
Score = 32.7 bits (73), Expect = 0.82, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 448 QSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
+ + TPL +A + G LE+V+ +L+A + +D NG+ + LA + + +LLL+
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 85 TKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRC 144
+K +T LH AA +GH++ V +L+ + + ++ GNT LHLAA G+ E+ +
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 145 MASKDPKLVGARNKDSETPLFLAALNG 171
+ +K V AR+KD TP LA NG
Sbjct: 61 LLAKGAD-VNARSKDGNTPEHLAKKNG 86
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 126 GNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHD 185
GNT LH AA G+ E + + SK V AR+KD TPL LAA NG A + L+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGH--AEIVKLLLAKG 65
Query: 186 KDSSLGRKSNGDTILHAA 203
D + R +G+T H A
Sbjct: 66 ADVN-ARSKDGNTPEHLA 82
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKI---TKSEDTALHLAAASGHSDVVCRLVETMGE 113
L +A GH + + + +S+ A + +K +T LHLAA +GH+++V +L+ G
Sbjct: 13 LHNAAKNGHAEEVKKL-----LSKGADVNARSKDGNTPLHLAAKNGHAEIV-KLLLAKGA 66
Query: 114 NESNILKIQNNRGNTALHLAAALGNVEMCRCMASK 148
+ + ++ GNT HLA G+ E+ + + +K
Sbjct: 67 D----VNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LH+AAA GH ++V E + N +++ + N G T LHLAA+LG++E+ +
Sbjct: 37 TPLHMAAAVGHLEIV----EVLLRNGADVNAVDTN-GTTPLHLAASLGHLEIVEVLLKYG 91
Query: 150 PKLVGARNKDSETPLFLAALNG 171
V A++ TPL+LAA G
Sbjct: 92 AD-VNAKDATGITPLYLAAYWG 112
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AA +G D V R++ G + + ++ G T LH+AAA+G++E+ + ++ V
Sbjct: 9 AARAGQDDEV-RILMANGADAN----AYDHYGRTPLHMAAAVGHLEIVEVLL-RNGADVN 62
Query: 155 ARNKDSETPLFLAA 168
A + + TPL LAA
Sbjct: 63 AVDTNGTTPLHLAA 76
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A G LEIVE +L + + +DA G + LA I E+LLK
Sbjct: 70 TPLHLAASLGHLEIVEVLLK-YGADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 15/195 (7%)
Query: 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALG-----NVEMC 142
+ T LHLA + ++ L+ + E +++ RGNT LHLA G V
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPE-----LRDFRGNTPLHLACEQGCLASVGVLTQ 99
Query: 143 RCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHA 202
C ++ A N + T L LA+++G L L D ++ NG T LH
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ--EPCNGRTALHL 157
Query: 203 AISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVS 262
A+ L +++C D VN V G SP + G+P+ R LG L +
Sbjct: 158 AVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPST-RIQQQLGQLTLENLQMLP 215
Query: 263 VDELREEKYDYSKNY 277
E EE YD +
Sbjct: 216 ESE-DEESYDTESEF 229
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALG-----NVEMC 142
+ T LHLA + ++ L+ + E +++ RGNT LHLA G V
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPE-----LRDFRGNTPLHLACEQGCLASVGVLTQ 96
Query: 143 RCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHA 202
C ++ A N + T L LA+++G L L D ++ NG T LH
Sbjct: 97 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ--EPCNGRTALHL 154
Query: 203 AISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPN 242
A+ L +++C D VN V G SP + G+P+
Sbjct: 155 AVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPS 193
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENES 116
L E+A G D V+ +N AK K T LHLAA GH ++V L++ +
Sbjct: 18 LLEAARAGQ-DDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD--- 72
Query: 117 NILKIQNNRGNTALHLAAALGNVEMCRCM--ASKDPKLVGARNKDSETPLFLAALNG 171
+ ++ G T LHLAA G++E+ + A D V A++KD TPL LAA G
Sbjct: 73 --VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREG 124
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A + G LEIVE +L A + +D +G + LA I E+LLK +
Sbjct: 49 TPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 514 NAFRKLDNQGNSALHYAA 531
D G + LH AA
Sbjct: 108 AK----DKDGYTPLHLAA 121
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 153 VGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212
V A++KD TPL LAA G L D ++ + +G T LH A + +
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA---KDKDGYTPLHLAAREGHLEIV 96
Query: 213 FHIIRCYPDLVNCVNENGLSPLHILA 238
+++ D VN +++G +PLH+ A
Sbjct: 97 EVLLKAGAD-VNAKDKDGYTPLHLAA 121
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCM--AS 147
T LHLAA GH ++V L++ + + ++ G T LHLAA G++E+ + A
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGAD-----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 148 KDPKLVGARNKDSETPLFLAALNGKK 173
D V A++K +T ++ NG +
Sbjct: 137 AD---VNAQDKFGKTAFDISIDNGNE 159
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKITKSED---TALHLAAASGHSDVVCRLVETMGE 113
L E+A G+ D + E+ A + S+ T LH AA +GH +VV L+ +
Sbjct: 8 LIEAAENGNKDRVKDLIENG-----ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD 62
Query: 114 NESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKK 173
+ +++ G T LH AA G+ E+ + + SK V A++ D TPL AA NG K
Sbjct: 63 -----VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHK 116
Query: 174 AAFLCLHFLSHDKDSSLGRKSNGDTILHAA 203
L D ++S S+G T L A
Sbjct: 117 EVVKLLISKGADVNTS---DSDGRTPLDLA 143
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AA +G+ D V L+E + + ++ G T LH AA G+ E+ + + SK V
Sbjct: 11 AAENGNKDRVKDLIENGAD-----VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VN 64
Query: 155 ARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFH 214
A++ D TPL AA NG K L +S D + + S+G T LH A + +
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLL--ISKGADVN-AKDSDGRTPLHHAAENGHKEVVKL 121
Query: 215 IIRCYPDLVNCVNENGLSPLHI 236
+I D VN + +G +PL +
Sbjct: 122 LISKGAD-VNTSDSDGRTPLDL 142
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 19/146 (13%)
Query: 385 MKELVQ-CASLYKYDDNGQNPENSRLDNKHGE--PFLVP-----------GARPVPENTE 430
+K+L++ A + D +G+ P + +N H E L+ G P+ E
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE 79
Query: 431 TSQKNIV---LSTPEKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGK 487
K +V +S N + S + TPL A + G E+V K+L + + D++G+
Sbjct: 80 NGHKEVVKLLISKGADVNAKDSDGR-TPLHHAAENGHKEVV-KLLISKGADVNTSDSDGR 137
Query: 488 NVVLLAVEHRQTHIYELLLKKKMIME 513
+ LA EH + +LL K+ +E
Sbjct: 138 TPLDLAREHGNEEVVKLLEKQGGWLE 163
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENES 116
L E+A G D V+ +N AK K T LHLAA GH ++V L++ +
Sbjct: 6 LLEAARAGQDDE-VRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD--- 60
Query: 117 NILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNG 171
+ ++ G T LHLAA G++E+ + K V A++KD TPL LAA G
Sbjct: 61 --VNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREG 112
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA GH ++V L++ + + ++ G T LHLAA G++E+ + K
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD-----VNAKDKDGYTPLHLAAREGHLEIVEVLL-KA 123
Query: 150 PKLVGARNKDSETPLFLAALNGKK 173
V A++K +TP LA NG +
Sbjct: 124 GADVNAQDKFGKTPFDLAIDNGNE 147
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A + G LEIVE +L A + +D +G + LA I E+LLK +
Sbjct: 37 TPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 514 NAFRKLDNQGNSALHYAA 531
D G + LH AA
Sbjct: 96 AK----DKDGYTPLHLAA 109
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 153 VGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212
V A++KD TPL LAA G L D ++ + +G T LH A + +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA---KDKDGYTPLHLAAREGHLEIV 84
Query: 213 FHIIRCYPDLVNCVNENGLSPLHILA 238
+++ D VN +++G +PLH+ A
Sbjct: 85 EVLLKAGAD-VNAKDKDGYTPLHLAA 109
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A + G LEIVE +L A + +D GK LA+++ I E+L K
Sbjct: 103 TPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENES 116
L E+A G D V+ +N AK K T LHLAA GH ++V L++ +
Sbjct: 6 LLEAARAGQDDE-VRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD--- 60
Query: 117 NILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNG 171
+ ++ G T LHLAA G++E+ + K V A++KD TPL LAA G
Sbjct: 61 --VNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREG 112
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA GH ++V L++ + + ++ G T LHLAA G++E+ + K
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD-----VNAKDKDGYTPLHLAAREGHLEIVEVLL-KA 123
Query: 150 PKLVGARNKDSETPLFLAALNGKK 173
V A++K +TP LA G +
Sbjct: 124 GADVNAQDKFGKTPFDLAIREGHE 147
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A + G LEIVE +L A + +D +G + LA I E+LLK +
Sbjct: 37 TPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 514 NAFRKLDNQGNSALHYAA 531
D G + LH AA
Sbjct: 96 AK----DKDGYTPLHLAA 109
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 153 VGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212
V A++KD TPL LAA G L D ++ + +G T LH A + +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA---KDKDGYTPLHLAAREGHLEIV 84
Query: 213 FHIIRCYPDLVNCVNENGLSPLHILA 238
+++ D VN +++G +PLH+ A
Sbjct: 85 EVLLKAGAD-VNAKDKDGYTPLHLAA 109
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A + G LEIVE +L A + +D GK LA+ I E+L K
Sbjct: 103 TPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKITKSED---TALHLAAASGHSDVVCRLVETMGE 113
L E+A G+ D + E+ A + S+ T LH AA GH ++V L+ +
Sbjct: 8 LIEAAENGNKDRVKDLIENG-----ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD 62
Query: 114 NESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKK 173
+ +++ G T LH AA G+ E+ + + SK V A++ D TPL AA G K
Sbjct: 63 -----VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHK 116
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 421 GARPVPENTETSQKNIV---LSTPEKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPV 477
G P+ + K IV +S N + S + TPL A K G EIV K+L +
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-TPLHYAAKEGHKEIV-KLLISKGA 127
Query: 478 AIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
+ D++G+ + LA EH I +LL K+ +E
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 16/121 (13%)
Query: 57 LFESAMRGHWDHIVQAYE--SNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGEN 114
L E+A G+ D + E ++P + ++ T LH AA +GH ++V +L+ + G +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGR----TPLHYAAENGHKEIV-KLLLSKGAD 62
Query: 115 ESNILKIQNNRGNTALHLAAALGNVEMCRCMASK--DPKLVGARNKDSETPLFLAALNGK 172
+ +++ G T LH AA G+ E+ + + SK DP A++ D TPL AA NG
Sbjct: 63 PN----AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN---AKDSDGRTPLHYAAENGH 115
Query: 173 K 173
K
Sbjct: 116 K 116
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 14/144 (9%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASK--DPKL 152
AA +G+ D V L+E + + ++ G T LH AA G+ E+ + + SK DP
Sbjct: 11 AAENGNKDRVKDLLENGADPNA-----SDSDGRTPLHYAAENGHKEIVKLLLSKGADPN- 64
Query: 153 VGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212
A++ D TPL AA NG K L LS D + + S+G T LH A + +
Sbjct: 65 --AKDSDGRTPLHYAAENGHKEIVKLL--LSKGADPN-AKDSDGRTPLHYAAENGHKEIV 119
Query: 213 FHIIRCYPDLVNCVNENGLSPLHI 236
++ D N + +G +PL +
Sbjct: 120 KLLLSKGAD-PNTSDSDGRTPLDL 142
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 78 MSQEAKITKSED---TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAA 134
M+ A + +++ T LHLAA++GH ++ VE + +N +++ + G T LHLAA
Sbjct: 34 MANGADVNATDNDGYTPLHLAASNGHLEI----VEVLLKNGADV-NASDLTGITPLHLAA 88
Query: 135 ALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNG 171
A G++E+ + K V A + D TPL LAA G
Sbjct: 89 ATGHLEIVEVLL-KHGADVNAYDNDGHTPLHLAAKYG 124
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAAA+GH ++V L++ + + +N G+T LHLAA G++E+ + K
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGAD-----VNAYDNDGHTPLHLAAKYGHLEIVEVLL-KH 135
Query: 150 PKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNE 159
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A G LEIVE +L + D G + LA I E+LLK +
Sbjct: 49 TPLHLAASNGHLEIVEVLLKN-GADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV- 106
Query: 514 NAFRKLDNQGNSALHYAAMF 533
NA+ DN G++ LH AA +
Sbjct: 107 NAY---DNDGHTPLHLAAKY 123
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AA +G D V R++ G + + +N G T LHLAA+ G++E+ + K+ V
Sbjct: 21 AARAGQDDEV-RILMANGAD----VNATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVN 74
Query: 155 ARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAA 203
A + TPL LAA G L L H D + ++G T LH A
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVL--LKHGADVN-AYDNDGHTPLHLA 120
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A TG LEIVE +L + D +G + LA ++ I E+LLK
Sbjct: 82 TPLHLAAATGHLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 153 VGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212
V A + D TPL LAA NG L D ++S G T LH A + + +
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS---DLTGITPLHLAAATGHLEIV 96
Query: 213 FHIIRCYPDLVNCVNENGLSPLHILA 238
+++ D VN + +G +PLH+ A
Sbjct: 97 EVLLKHGAD-VNAYDNDGHTPLHLAA 121
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 14/119 (11%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKITKSED---TALHLAAASGHSDVVCRLVETMGE 113
L E+A G D + M+ A + ++D T LHLAAA+G ++ VE + +
Sbjct: 10 LLEAAAAGQDDEVRIL-----MANGADVNATDDNGLTPLHLAAANGQLEI----VEVLLK 60
Query: 114 NESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGK 172
N +++ ++ G T LHLAA G++E+ + K V A ++ TPL LAAL+G+
Sbjct: 61 NGADV-NASDSAGITPLHLAAYDGHLEIVEVLL-KHGADVNAYDRAGWTPLHLAALSGQ 117
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AAA+G D V R++ G + + ++ G T LHLAAA G +E+ + K+ V
Sbjct: 13 AAAAGQDDEV-RILMANGAD----VNATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVN 66
Query: 155 ARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILH-AAISG 206
A + TPL LAA +G L L H D + ++ G T LH AA+SG
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVL--LKHGADVNAYDRA-GWTPLHLAALSG 116
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A G LEIVE +L + D+ G + LA I E+LLK +
Sbjct: 41 TPLHLAAANGQLEIVEVLLKN-GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV- 98
Query: 514 NAFRKLDNQGNSALHYAAM 532
NA+ D G + LH AA+
Sbjct: 99 NAY---DRAGWTPLHLAAL 114
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCM 145
T LHLAA GH ++V L++ + + + G T LHLAA G +E+ +
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGAD-----VNAYDRAGWTPLHLAALSGQLEIVEVL 124
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LH+A+ GH +V L++ + +K++ T LH+AA G+ E+ + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-----TPLHMAARAGHTEVAKYLLQNK 70
Query: 150 PKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYF 209
K V A+ KD +TPL AA G L L ++ + +L + G T LH A +
Sbjct: 71 AK-VNAKAKDDQTPLHCAARIGHTNMVKLL--LENNANPNLATTA-GHTPLHIAAREGHV 126
Query: 210 SLAFHIIRCYPDLVNCVNENGLSPLHILA 238
++ C+ + G +PLH+ A
Sbjct: 127 ETVLALLEKEASQA-CMTKKGFTPLHVAA 154
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCM 145
K + T LH AA GH+++V L+ EN +N + G+T LH+AA G+VE +
Sbjct: 78 KDDQTPLHCAARIGHTNMVKLLL----ENNANP-NLATTAGHTPLHIAAREGHVETVLAL 132
Query: 146 ASKDPKLVGARNKDSETPLFLAALNGK-KAAFLCLHFLSHDKDSSLGRKSNGDTILHAAI 204
K+ K TPL +AA GK + A L L +H + NG T LH A+
Sbjct: 133 LEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG----KNGLTPLHVAV 187
Query: 205 SGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILA 238
+ + ++ + NG +PLHI A
Sbjct: 188 HHNNLDI-VKLLLPRGGSPHSPAWNGYTPLHIAA 220
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 20/153 (13%)
Query: 89 DTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMA-- 146
+T LH+AA +GH++V L++ + + K ++++ T LH AA +G+ M + +
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNA---KAKDDQ--TPLHCAARIGHTNMVKLLLEN 102
Query: 147 SKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLG-RKSNGDTILHAAIS 205
+ +P L TPL +AA G L L +K++S G T LH A
Sbjct: 103 NANPNLA---TTAGHTPLHIAAREGHVETVLAL----LEKEASQACMTKKGFTPLHVAAK 155
Query: 206 GDYFSLAFHIIR--CYPDLVNCVNENGLSPLHI 236
+A ++ +P N +NGL+PLH+
Sbjct: 156 YGKVRVAELLLERDAHP---NAAGKNGLTPLHV 185
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 63/148 (42%), Gaps = 14/148 (9%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LH+AA +V L++ G +N +Q G T LHLAA G+ EM + SK
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGS--ANAESVQ---GVTPLHLAAQEGHAEMVALLLSKQ 268
Query: 150 PKLVGARNKDSETPLFLAALNGK--KAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGD 207
NK TPL L A G A L H + D + +G T LH A
Sbjct: 269 AN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-----TPLHVASHYG 322
Query: 208 YFSLAFHIIRCYPDLVNCVNENGLSPLH 235
L +++ D VN + G SPLH
Sbjct: 323 NIKLVKFLLQHQAD-VNAKTKLGYSPLH 349
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 100/272 (36%), Gaps = 57/272 (20%)
Query: 60 SAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNIL 119
+A GH + + E+N A T + T LH+AA GH + V L+E
Sbjct: 87 AARIGHTNMVKLLLENNANPNLA--TTAGHTPLHIAAREGHVETVLALLEKEASQ----- 139
Query: 120 KIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLA------------ 167
+G T LH+AA G V + + +D A K+ TPL +A
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Query: 168 ----------ALNGKKAAFLCLHFLSHDKDSSLGRK------------SNGDTILHAAIS 205
A NG + LH + + R G T LH A
Sbjct: 199 LPRGGSPHSPAWNG----YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 254
Query: 206 GDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDE 265
+ + ++ + N N++GL+PLH++A + + D+++ V VD
Sbjct: 255 EGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVA-------QEGHVPVADVLIKHGVMVDA 306
Query: 266 LREEKY---DYSKNYGSHGTAKFPENYRTCIN 294
Y + +YG+ KF ++ +N
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 448 QSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
+ R +TPL++A + L +V+++L+ + I D D++GK +LLAVE + I ELL K
Sbjct: 235 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294
Query: 508 K 508
+
Sbjct: 295 R 295
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 448 QSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
+ R +TPL++A + L +V+++L+ + I D D++GK +LLAVE + I ELL K
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274
Query: 508 K 508
+
Sbjct: 275 R 275
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
TALHLAAA SD RL+E + IQ+N G T LH A + + + +
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASAD-----ANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 150 PKLVGARNKDSETPLFLAA 168
+ AR D TPL LAA
Sbjct: 114 ATDLDARMHDGTTPLILAA 132
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 448 QSRRKETPLLIATKTGVLEIVEKILDAF 475
Q+ R+ETPL +A + G E + +LD F
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHF 213
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCM 145
++ +TALHLAA SD RL+E + IQ+N G T LH A + + + +
Sbjct: 23 RTGETALHLAARYSRSDAAKRLLEASAD-----ANIQDNMGRTPLHAAVSADAQGVFQIL 77
Query: 146 ASKDPKLVGARNKDSETPLFLAA 168
+ AR D TPL LAA
Sbjct: 78 IRNRATDLDARMHDGTTPLILAA 100
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 448 QSRRKETPLLIATKTGVLEIVEKILDAF 475
Q+ R+ETPL +A + G E + +LD F
Sbjct: 154 QNNREETPLFLAAREGSYETAKVLLDHF 181
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCM 145
++ +TALHLAA SD RL+E + IQ+N G T LH A + + + +
Sbjct: 55 RTGETALHLAARYSRSDAAKRLLEASAD-----ANIQDNMGRTPLHAAVSADAQGVFQIL 109
Query: 146 ASKDPKLVGARNKDSETPLFLAA 168
+ AR D TPL LAA
Sbjct: 110 IRNRATDLDARMHDGTTPLILAA 132
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 448 QSRRKETPLLIATKTGVLEIVEKILDAF 475
Q+ R+ETPL +A + G E + +LD F
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHF 213
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 92 LHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPK 151
+H AA +G D + +T+ EN++++ I++N GN LHLAA G++ + +
Sbjct: 74 IHDAARAGFLDTL----QTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 152 LVGARNKDSETPLFLAALNGK 172
VG RN +T LA L G+
Sbjct: 129 NVGHRNHKGDTACDLARLYGR 149
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA +GH ++V L++ + + +N G T LHLAA G++E+ + K
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGAD-----VNAWDNYGATPLHLAADNGHLEIVEVLL-KH 102
Query: 150 PKLVGARNKDSETPLFLAALNG 171
V A++ + TPL LAA +G
Sbjct: 103 GADVNAKDYEGFTPLHLAAYDG 124
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A KTG LEIVE +L + + D G + LA ++ I E+LLK +
Sbjct: 49 TPLHLAAKTGHLEIVEVLLK-YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 514 NAFRKLDNQGNSALHYAAMFENH 536
D +G + LH AA ++ H
Sbjct: 108 AK----DYEGFTPLHLAA-YDGH 125
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 126 GNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHD 185
G+T LHLAA G++E+ + V A + TPL LAA NG L L H
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVL--LKHG 103
Query: 186 KDSSLGRKSNGDTILHAA 203
D + + G T LH A
Sbjct: 104 ADVN-AKDYEGFTPLHLA 120
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCM 145
++ +TALHLAA SD RL+E + IQ+N G T LH A + + + +
Sbjct: 20 RTGETALHLAARYSRSDAAKRLLEASAD-----AXIQDNMGRTPLHAAVSADAQGVFQIL 74
Query: 146 ASKDPKLVGARNKDSETPLFLAA 168
+ AR D TPL LAA
Sbjct: 75 LRNRATDLDARMHDGTTPLILAA 97
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA GH ++V E + +N +++ + G+T LHLAA G++E+ + K+
Sbjct: 49 TPLHLAAYWGHLEIV----EVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLL-KN 102
Query: 150 PKLVGARNKDSETPLFLAALNG 171
V A++ + TPL LAA G
Sbjct: 103 GADVNAKDDNGITPLHLAANRG 124
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 62 MRGHWDH--IVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNIL 119
+ +W H IV+ N A T T LHLAA GH ++V E + +N +++
Sbjct: 53 LAAYWGHLEIVEVLLKNGADVNAYDTLGS-TPLHLAAHFGHLEIV----EVLLKNGADV- 106
Query: 120 KIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKK 173
+++ G T LHLAA G++E+ + V A++K +T ++ NG +
Sbjct: 107 NAKDDNGITPLHLAANRGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISINNGNE 159
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A G LEIVE +L + +D NG + LA I E+LLK
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKN-GADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 48/162 (29%)
Query: 126 GNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHD 185
G T LHLAA G++E+ + K+ V A + TPL LAA HF H
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLL-KNGADVNAYDTLGSTPLHLAA-----------HF-GHL 93
Query: 186 KDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFR 245
+ + K+ D VN ++NG++PLH+ A + +
Sbjct: 94 EIVEVLLKNGAD-------------------------VNAKDDNGITPLHLAANRGH--- 125
Query: 246 SSSCLGLFDLML---YDCVSVDELREEKYDYSKNYGSHGTAK 284
L + +++L D + D+ + +D S N G+ A+
Sbjct: 126 ----LEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAE 163
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 78 MSQEAKITKSEDTA---LHLAAASGHSDVVCRLVETMGE-NESNILKIQNNRGNTALHLA 133
M+ A + +++T LHLAA SGH ++V L++ + + S++ G T LHLA
Sbjct: 34 MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF------GYTPLHLA 87
Query: 134 AALGNVEMCRCMASKDPKLVGARNKDSETPLFLAA 168
A G++E+ + K+ V A + D TPL LAA
Sbjct: 88 AYWGHLEIVEVLL-KNGADVNAMDSDGMTPLHLAA 121
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AA +G D V R++ G + + +N G T LHLAA G++E+ + K V
Sbjct: 21 AARAGQDDEV-RILMANGAD----VNAADNTGTTPLHLAAYSGHLEIVEVLL-KHGADVD 74
Query: 155 ARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSL 211
A + TPL LAA G L L + D + S+G T LH A Y +
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVL--LKNGADVN-AMDSDGMTPLHLAAKWGYLEI 128
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A +G LEIVE +L + D G + LA I E+LLK +
Sbjct: 49 TPLHLAAYSGHLEIVEVLLK-HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV- 106
Query: 514 NAFRKLDNQGNSALHYAA 531
NA +D+ G + LH AA
Sbjct: 107 NA---MDSDGMTPLHLAA 121
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 83 KITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMC 142
+ ++ +TALHLAA SD RL+E + IQ+N G T LH A + +
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLLEASAD-----ANIQDNMGRTPLHAAVSADAQGVF 107
Query: 143 RCMASKDPKLVGARNKDSETPLFLAA 168
+ + + AR D TPL LAA
Sbjct: 108 QILIRNRATDLDARMHDGTTPLILAA 133
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 448 QSRRKETPLLIATKTGVLEIVEKILDAF 475
Q+ R+ETPL +A + G E + +LD F
Sbjct: 187 QNNREETPLFLAAREGSYETAKVLLDHF 214
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 57 LFESAMRGHWDH--IVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGEN 114
L E+A G D I+ A ++ +++A S T LHLAA +GH ++ VE + +N
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDA----SGWTPLHLAAFNGHLEI----VEVLLKN 69
Query: 115 ESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNG 171
+++ + ++ G T L LAA G++E+ + K+ V A + + TPL LAA+ G
Sbjct: 70 GADVNAV-DHAGMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFG 124
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 60 SAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNIL 119
+A GH + IV+ N A + + T L LAA GH ++V L++ + +N +
Sbjct: 54 AAFNGHLE-IVEVLLKNGADVNA-VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM 111
Query: 120 KIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKK 173
+ G+T LHLAA G++E+ + K+ V A++K +T ++ NG +
Sbjct: 112 E-----GHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNE 159
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A G LEIVE +L + D G + LA I E+LLK +
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 514 NAFRKLDNQGNSALHYAAMF 533
D +G++ LH AAMF
Sbjct: 108 AN----DMEGHTPLHLAAMF 123
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENES 116
L E+A G D V+ +N A+ T DT LHLAA GH ++ VE + +N +
Sbjct: 18 LLEAARAGQ-DDEVRILMANGADVNAEDTYG-DTPLHLAARVGHLEI----VEVLLKNGA 71
Query: 117 NILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNG 171
++ + + G+T LHLAA G++E+ + V A + TPL LAA G
Sbjct: 72 DVNAL-DFSGSTPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLHLAADTG 124
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 87 SEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMA 146
S T LHLAA GH ++V L++ + ++ + G+T LHLAA G++E+ +
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGADVNAD-----DTIGSTPLHLAADTGHLEIVEVLL 133
Query: 147 SKDPKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 134 KYGAD-VNAQDKFGKTAFDISIDNGNE 159
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 453 ETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIM 512
+TPL +A + G LEIVE +L + D +G + LA + I E+LLK +
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKN-GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 513 ENAFRKLDNQGNSALHYAA 531
D G++ LH AA
Sbjct: 107 NAD----DTIGSTPLHLAA 121
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELL 505
TPL +A TG LEIVE +L + + +D GK +++++ + E+L
Sbjct: 115 TPLHLAADTGHLEIVEVLLK-YGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCM 145
++ + +H AA +G D + L+E + + I++N GN LHLAA G++ + +
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 146 ASKDPKLVGARNKDSETPLFLAALNGK 172
VG RN +T LA L G+
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGR 149
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 92 LHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPK 151
+H AA +G D + L+E + + I++N GN LHLAA G++ + +
Sbjct: 74 IHDAARAGQLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 152 LVGARNKDSETPLFLAALNGK 172
VG RN +T LA L G+
Sbjct: 129 NVGHRNHKGDTACDLARLYGR 149
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 90 TALHLAAASGHSDVVCRLVETMGE-NESNILKIQNNRGNTALHLAAALGNVEMCRCMASK 148
T LHLAA GH ++V L++ + N +I+ G+T LHLAA +G++E+ + K
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAIDIM------GSTPLHLAALIGHLEIVEVLL-K 101
Query: 149 DPKLVGARNKDSETPLFLAALNG 171
V A + +TPL LAA+ G
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMG 124
Score = 35.8 bits (81), Expect = 0.094, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA GH ++V E + ++ +++ + + G+T LHLAA +G++E+ + K
Sbjct: 82 TPLHLAALIGHLEIV----EVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLL-KH 135
Query: 150 PKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNE 159
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AA +G D V R++ G + + + G T LHLAA G++E+ + K V
Sbjct: 21 AARAGQDDEV-RILMANGAD----VNATDASGLTPLHLAATYGHLEIVEVLL-KHGADVN 74
Query: 155 ARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILH-AAISG 206
A + TPL LAAL G L L H D + + GDT LH AAI G
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVL--LKHGADVN-AVDTWGDTPLHLAAIMG 124
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA GH ++V E + ++ +++ I + G+T LHLAA +G++E+ + K
Sbjct: 49 TPLHLAATYGHLEIV----EVLLKHGADVNAI-DIXGSTPLHLAALIGHLEIVEVLL-KH 102
Query: 150 PKLVGARNKDSETPLFLAALNG 171
V A + +TPL LAA+ G
Sbjct: 103 GADVNAVDTWGDTPLHLAAIMG 124
Score = 35.8 bits (81), Expect = 0.094, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA GH ++V E + ++ +++ + + G+T LHLAA +G++E+ + K
Sbjct: 82 TPLHLAALIGHLEIV----EVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLL-KH 135
Query: 150 PKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNE 159
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AA +G D V R++ G + + + G T LHLAA G++E+ + K V
Sbjct: 21 AARAGQDDEV-RILMANGAD----VNATDASGLTPLHLAATYGHLEIVEVLL-KHGADVN 74
Query: 155 ARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILH-AAISG 206
A + TPL LAAL G L L H D + + GDT LH AAI G
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVL--LKHGADVN-AVDTWGDTPLHLAAIMG 124
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 92 LHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPK 151
+H AA +G D + L+E + + I++N GN LHLAA G++ + +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 152 LVGARNKDSETPLFLAALNGK 172
VG RN +T LA L G+
Sbjct: 129 NVGHRNHKGDTACDLARLYGR 149
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 92 LHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPK 151
+H AA +G D + L+E + + I++N GN LHLAA G++ + +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 152 LVGARNKDSETPLFLAALNGK 172
VG RN +T LA L G+
Sbjct: 129 NVGHRNHKGDTACDLARLYGR 149
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA GH ++ VE + +N +++ +++ G T LHLAA G++E+ + K+
Sbjct: 49 TPLHLAAHFGHLEI----VEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLL-KN 102
Query: 150 PKLVGARNKDSETPLFLAALNG 171
V A + TPL LAA G
Sbjct: 103 GADVNASDSHGFTPLHLAAKRG 124
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA GH ++ VE + +N +++ ++ G T LHLAA G++E+ + K+
Sbjct: 82 TPLHLAARRGHLEI----VEVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLL-KN 135
Query: 150 PKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNE 159
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AA +G D V R++ G + + ++ G T LHLAA G++E+ + K+ V
Sbjct: 21 AARAGQDDEV-RILMANGAD----VNARDFTGWTPLHLAAHFGHLEIVEVLL-KNGADVN 74
Query: 155 ARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAA 203
A++ TPL LAA G L D ++S S+G T LH A
Sbjct: 75 AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS---DSHGFTPLHLA 120
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A G LEIVE +L + +D+ G + LA I E+LLK +
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKN-GADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 514 NAFRKLDNQGNSALHYAA 531
+ D+ G + LH AA
Sbjct: 108 AS----DSHGFTPLHLAA 121
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A + G LEIVE +L + D++G + LA + I E+LLK
Sbjct: 82 TPLHLAARRGHLEIVEVLLKN-GADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 10/147 (6%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
TALH A ++GH+++V L++ +G ++ +++ G + LH+AA+ G E+ + + K
Sbjct: 42 TALHWACSAGHTEIVEFLLQ-LGVPVND----KDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 150 PKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYF 209
+ V A N++ TPL AA + + L + D+ + T +H A +
Sbjct: 97 AQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAMHRAAAKGNL 152
Query: 210 SLAFHIIRCYPDLVNCVNENGLSPLHI 236
+ HI+ Y N + G +PLH+
Sbjct: 153 KM-IHILLYYKASTNIQDTEGNTPLHL 178
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMAS 147
E TA+H AAA G+ ++ L+ IQ+ GNT LHLA VE + + S
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKAST-----NIQDTEGNTPLHLACDEERVEEAKLLVS 193
Query: 148 KDPKLVGARNKDSETPLFLA 167
+ + NK+ +TPL +A
Sbjct: 194 QGASIY-IENKEEKTPLQVA 212
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 84 ITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCR 143
+ + +DT LHLAA+ GH D+V +L++ + + N GN LH A G ++
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQYKAD-----INAVNEHGNVPLHYACFWGQDQVAE 122
Query: 144 CMASKDPKLVGARNKDSETPL 164
+ + + LV NK E P+
Sbjct: 123 DLVA-NGALVSICNKYGEMPV 142
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 10/147 (6%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
TALH A ++GH+++V L++ +G ++ +++ G + LH+AA+ G E+ + + K
Sbjct: 43 TALHWACSAGHTEIVEFLLQ-LGVPVND----KDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 150 PKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYF 209
+ V A N++ TPL AA + + L + D+ + T +H A +
Sbjct: 98 AQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAMHRAAAKGNL 153
Query: 210 SLAFHIIRCYPDLVNCVNENGLSPLHI 236
+ HI+ Y N + G +PLH+
Sbjct: 154 KM-IHILLYYKASTNIQDTEGNTPLHL 179
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMAS 147
E TA+H AAA G+ ++ L+ IQ+ GNT LHLA VE + + S
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKAST-----NIQDTEGNTPLHLACDEERVEEAKLLVS 194
Query: 148 KDPKLVGARNKDSETPLFLA 167
+ + NK+ +TPL +A
Sbjct: 195 QGASIY-IENKEEKTPLQVA 213
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 84 ITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCR 143
+ + +DT LHLAA+ GH D+V +L++ + + N GN LH A G ++
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQYKAD-----INAVNEHGNVPLHYACFWGQDQVAE 117
Query: 144 CMASKDPKLVGARNKDSETPL 164
+ + + LV NK E P+
Sbjct: 118 DLVA-NGALVSICNKYGEMPV 137
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AA +G D V R++ G + + +++G+T LHLAA +G+ E+ + K V
Sbjct: 21 AARAGQDDEV-RILMANGAD----VNAHDDQGSTPLHLAAWIGHPEIVEVLL-KHGADVN 74
Query: 155 ARNKDSETPLFLAALNG 171
AR+ D TPL LAA NG
Sbjct: 75 ARDTDGWTPLHLAADNG 91
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKITKSED---TALHLAAASGHSDVVCRLVETMGE 113
L E+A G D + M+ A + +D T LHLAA GH ++V L++ +
Sbjct: 18 LLEAARAGQDDEVRIL-----MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 114 NESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNG 171
+ ++ G T LHLAA G++E+ + V A++ TPL LAA G
Sbjct: 73 -----VNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD-VNAQDAYGLTPLHLAADRG 124
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA +GH ++V L++ + + Q+ G T LHLAA G++E+ + K
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGAD-----VNAQDAYGLTPLHLAADRGHLEIVEVLL-KH 135
Query: 150 PKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNE 159
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 153 VGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212
V A + TPL LAA G L L H D + R ++G T LH A + +
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVL--LKHGADVN-ARDTDGWTPLHLAADNGHLEIV 96
Query: 213 FHIIRCYPDLVNCVNENGLSPLHILAGK 240
+++ D VN + GL+PLH+ A +
Sbjct: 97 EVLLKYGAD-VNAQDAYGLTPLHLAADR 123
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A G LEIVE +L + + +DA G + LA + I E+LLK
Sbjct: 82 TPLHLAADNGHLEIVEVLLK-YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 92 LHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMAS 147
+H+AA G +D V RL+ET G + + IQN G TALHLA G V+ + +AS
Sbjct: 24 IHVAARKGQTDEVRRLIET-GVSPT----IQNRFGCTALHLACKFGCVDTAKYLAS 74
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 78 MSQEAKITKSED---TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAA 134
M+ A + S+ T LHLAA GH ++ VE + +N +++ ++ G T LHLAA
Sbjct: 34 MANGADVNASDHVGWTPLHLAAYFGHLEI----VEVLLKNGADV-NADDSLGVTPLHLAA 88
Query: 135 ALGNVEMCRCMASKDPKLVGARNKDSETPLFLAA 168
G++E+ + K+ V A + + TPL LAA
Sbjct: 89 DRGHLEVVEVLL-KNGADVNANDHNGFTPLHLAA 121
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA GH +VV L++ + +N ++ G T LHLAA +G++E+ + K
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGADVNAN-----DHNGFTPLHLAANIGHLEIVEVLL-KH 135
Query: 150 PKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNE 159
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AA +G D V R++ G + + ++ G T LHLAA G++E+ + K+ V
Sbjct: 21 AARAGQDDEV-RILMANGAD----VNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGADVN 74
Query: 155 ARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAA 203
A + TPL LAA G L L + D + NG T LH A
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVL--LKNGADVN-ANDHNGFTPLHLA 120
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A G LEIVE +L + +D+ G + LA + + E+LLK +
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKN-GADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 514 NAFRKLDNQGNSALHYAA 531
D+ G + LH AA
Sbjct: 108 AN----DHNGFTPLHLAA 121
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
TALH A ++GH+++V L++ +G ++ +++ G + LH+AA+ G E+ + + K
Sbjct: 42 TALHWACSAGHTEIVEFLLQ-LGVPVND----KDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 150 PKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYF 209
V A N++ TPL AA + + L + D+ + T +H A +
Sbjct: 97 AH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAMHRAAAKGNL 152
Query: 210 SLAFHIIRCYPDLVNCVNENGLSPLHI 236
+ HI+ Y N + G +PLH+
Sbjct: 153 KM-VHILLFYKASTNIQDTEGNTPLHL 178
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
TA+H AAA G+ +V L+ IQ+ GNT LHLA VE + + ++
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKAST-----NIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 150 PKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSL 190
+ NK+ +TPL +A K L L L+ +++S+
Sbjct: 196 ASIY-IENKEEKTPLQVA----KGGLGLILKRLAEGEEASM 231
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
TALH A ++GH+++V L++ +G ++ +++ G + LH+AA+ G E+ + + K
Sbjct: 42 TALHWACSAGHTEIVEFLLQ-LGVPVND----KDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 150 PKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYF 209
V A N++ TPL AA + + L + D+ + T +H A +
Sbjct: 97 AH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAMHRAAAKGNL 152
Query: 210 SLAFHIIRCYPDLVNCVNENGLSPLHI 236
+ HI+ Y N + G +PLH+
Sbjct: 153 KM-VHILLFYKASTNIQDTEGNTPLHL 178
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
TA+H AAA G+ +V L+ IQ+ GNT LHLA VE + + ++
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKAST-----NIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 150 PKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSL 190
+ NK+ +TPL +A K L L L+ +++S+
Sbjct: 196 ASIY-IENKEEKTPLQVA----KGGLGLILKRLAEGEEASM 231
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA SGH ++V L++ + ++ + G T LHLAA G++E+ +
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHGADVDA-----ADVYGFTPLHLAAMTGHLEIVEVLLKYG 103
Query: 150 PKLVGARNKDSETPLFLAALNG 171
V A + TPL LAA G
Sbjct: 104 AD-VNAFDMTGSTPLHLAADEG 124
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A TG LEIVE +L + + D G + LA + I E+LLK
Sbjct: 82 TPLHLAAMTGHLEIVEVLLK-YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AA +G D V R++ G + + + +N G T LHLAA G++E+ + K V
Sbjct: 21 AARAGQDDEV-RILIANGADVNAV----DNTGLTPLHLAAVSGHLEIVEVLL-KHGADVD 74
Query: 155 ARNKDSETPLFLAALNG 171
A + TPL LAA+ G
Sbjct: 75 AADVYGFTPLHLAAMTG 91
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL +A +G LEIVE +L + D G + LA I E+LLK +
Sbjct: 49 TPLHLAAVSGHLEIVEVLLK-HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV- 106
Query: 514 NAFRKLDNQGNSALHYAA 531
NAF D G++ LH AA
Sbjct: 107 NAF---DMTGSTPLHLAA 121
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 123 NNRGNTALHLAAALGNVEMCRCM----ASKDPKLVGARNKDSETPLFLAALNGKKAA 175
+N G TALH AAA+ N E + A++D A++ ETPLFLAA G A
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLMHHANRD-----AQDDKDETPLFLAAREGSYEA 199
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 53 EIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMG 112
+I+N +S + D + Q E N A + K+ +T+LHLAA +D RL++
Sbjct: 21 DIENNEDSTAQVISDLLAQGAELN-----ATMDKTGETSLHLAARFARADAAKRLLDAGA 75
Query: 113 ENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAA 168
+ S Q+N G T LH A A + + + + + AR D TPL LAA
Sbjct: 76 DANS-----QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA 126
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 85 TKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRC 144
KS TALH+AAA G+++V+ L++ + + I++ G T LH AA G E CR
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYD-----VNIKDYDGWTPLHAAAHWGKEEACRI 250
Query: 145 M 145
+
Sbjct: 251 L 251
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 57 LFESAMRGHWD---HIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGE 113
L +S++ G +D I+ + + + IT ALH A +GH+++V LV+ G
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGIT-----ALHNAVCAGHTEIVKFLVQ-FGV 94
Query: 114 NESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSET 162
N + ++ G T LH AA+ NV++C+ + + D +T
Sbjct: 95 N----VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 57 LFESAMRGHWD---HIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGE 113
L +S++ G +D I+ + + + IT ALH A +GH+++V LV+ G
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGIT-----ALHNAVCAGHTEIVKFLVQ-FGV 94
Query: 114 NESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSET 162
N + ++ G T LH AA+ NV++C+ + + D +T
Sbjct: 95 N----VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 84 ITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNV 139
+T+ DTALHLA H + L+ +E L +QN+ G TALHLAA LG
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE--YLDLQNDLGQTALHLAAILGEA 58
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 84 ITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNV 139
+T+ DTALHLA H + L+ +E L +QN+ G TALHLAA LG
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE--YLDLQNDLGQTALHLAAILGEA 58
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 26 KDDISGVEEMDSNSLSTEDEEEKSMQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKIT 85
+DD + + ++ ED+ K+ L +A++GH + IV+ + A
Sbjct: 26 QDDEVRILMANGADVNAEDDSGKT------PLHLAAIKGHLE-IVEVLLKHGADVNAA-D 77
Query: 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCM 145
K DT LHLAA GH ++ VE + +N +++ + G T LHLAA G++E+ +
Sbjct: 78 KMGDTPLHLAALYGHLEI----VEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 146 ASKDPKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 133 LKYGAD-VNAQDKFGKTAFDISIDNGNE 159
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 456 LLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENA 515
LL A + G + V +IL A + ED +GK + LA I E+LLK + A
Sbjct: 18 LLEAARAGQDDEV-RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 516 FRKLDNQGNSALHYAAMF 533
D G++ LH AA++
Sbjct: 77 ----DKMGDTPLHLAALY 90
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 78 MSQEAKITKSED---TALHLAAASGHSDVVCRLVETMGE-NESNILKIQNNRGNTALHLA 133
M+ A + +D T LHLAA GH ++V L++ + N S+I G T LHLA
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW------GRTPLHLA 87
Query: 134 AALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKK 173
A +G++E+ + V A++K +T ++ NG +
Sbjct: 88 ATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNE 126
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A G LEIVE +L+ + + +D GK +++++ + E+L K
Sbjct: 82 TPLHLAATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 54 IDN-LFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMG 112
IDN L E+A RG+ + + ++ + K+ TAL+ A GH D+V L
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVN--GLDKAGSTALYWACHGGHKDIVEXLF---- 126
Query: 113 ENESNI-LKIQNNRGNTALHLAAALGNVEMCRCMASKDPK 151
+ NI L QN G+TALH AA G ++ + + +K +
Sbjct: 127 -TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 69 IVQAYESNPMSQEA-KITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGN 127
+V++ P+ + KIT T LHLA +V L+E ++I++
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-----VRIKDKFNQ 141
Query: 128 TALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCL 179
LH AA++G++++ + V ++K TPLF A G A + L
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 69 IVQAYESNPMSQEA-KITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGN 127
+V++ P+ + KIT T LHLA +V L+E ++I++
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-----VRIKDKFNQ 141
Query: 128 TALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCL 179
LH AA++G++++ + V ++K TPLF A G A + L
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 38/191 (19%)
Query: 92 LHLAAASGHSDVVCRLVETMGEN----------------ESNILKI-------------Q 122
LH AA +GH D+ C ++ G N E+N L+ +
Sbjct: 15 LHAAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 123 NNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFL 182
+ G+T LHLAA G+ E+ + + S V ++ TP+ A K L L
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA--TEYKHVDLVKLLL 131
Query: 183 SHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPN 242
S D ++ R + + LH A +A ++ DL + VN +G SPLHI A + N
Sbjct: 132 SKGSDINI-RDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHI-AAREN 188
Query: 243 AFRSSSCLGLF 253
+ C+ LF
Sbjct: 189 RY---DCVVLF 196
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 119 LKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLC 178
K+++ + LH AA G+V++C + + ++D TPL AA N A
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEA--- 59
Query: 179 LHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPL 234
+ +L + + G T LH A ++ + +++ VNC ++ G +P+
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
T L +A K G E+V+ +L + + +D G ++ A E++ + +LLL K
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG---- 134
Query: 514 NAFRKLDNQGNSALHYAA 531
+ DN+ N LH+AA
Sbjct: 135 SDINIRDNEENICLHWAA 152
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMAS 147
E+ LH AA SG D+ L+ + L N G++ LH+AA + S
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCD-----LHAVNIHGDSPLHIAARENRYDCVVLFLS 198
Query: 148 KDPKLVGARNKDSETPLFLAALNGK 172
+D V +NK+ ETPL A+LN +
Sbjct: 199 RDSD-VTLKNKEGETPLQCASLNSQ 222
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 69 IVQAYESNPMSQEA-KITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGN 127
+V++ P+ + KIT T LHLA +V L+E ++I++
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-----VRIKDKFNQ 141
Query: 128 TALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCL 179
LH AA++G++++ + V ++K TPLF A G A + L
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 36.6 bits (83), Expect = 0.056, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 78 MSQEAKITKSED---TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAA 134
M+ A + +D T LHLAA GH ++V L++ + + ++ G T LHLAA
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-----VNASDSWGRTPLHLAA 88
Query: 135 ALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKK 173
+G++E+ + V A++K +T ++ NG +
Sbjct: 89 TVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNE 126
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A G LEIVE +L+ + + +D GK +++++ + E+L K
Sbjct: 82 TPLHLAATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 119 LKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLC 178
+ + + G++ LH+AA G ++ + K GARN D PL LA G C
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLL-KHGANAGARNADQAVPLHLACQQGHFQVVKC 137
Query: 179 LHFLSHDKDSSLGRKS-NGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLH 235
L D ++ +K +G+T L A SG + L +++ + +N N G + LH
Sbjct: 138 L----LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALH 190
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENES 116
L E+A G D V+ +N A K +T LHLAA H ++V L++ +
Sbjct: 18 LLEAARAGQ-DDEVRILMANGADVNANDRKG-NTPLHLAADYDHLEIVEVLLKHGAD--- 72
Query: 117 NILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKK 173
+ +N G+T LHLAA G++E+ + K V A++K +T ++ NG +
Sbjct: 73 --VNAHDNDGSTPLHLAALFGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNE 126
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 456 LLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENA 515
LL A + G + V +IL A + D G + LA ++ I E+LLK + NA
Sbjct: 18 LLEAARAGQDDEV-RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NA 75
Query: 516 FRKLDNQGNSALHYAAMF 533
DN G++ LH AA+F
Sbjct: 76 H---DNDGSTPLHLAALF 90
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 78 MSQEAKITKSED---TALHLAAASGHSDVVCRLVETMGE-NESNILKIQNNRGNTALHLA 133
M+ A + +D T LHLAA GH ++V L++ + N +I G T LHLA
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW------GRTPLHLA 87
Query: 134 AALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKK 173
A +G++E+ + V A++K +T ++ NG +
Sbjct: 88 ATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNE 126
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A G LEIVE +L+ + + +D GK +++++ + E+L K
Sbjct: 82 TPLHLAATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA GH ++V L++ + + ++N G T LHLAA G++E+ + K
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGAD-----VNAEDNFGITPLHLAAIRGHLEIVEVLL-KH 102
Query: 150 PKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNE 126
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AA +G D V R++ G + + + + G T LHLAA LG++E+ + V
Sbjct: 21 AARAGQDDEV-RILMANGADVNAL----DEDGLTPLHLAAQLGHLEIVEVLLKYGAD-VN 74
Query: 155 ARNKDSETPLFLAALNG 171
A + TPL LAA+ G
Sbjct: 75 AEDNFGITPLHLAAIRG 91
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A + G LEIVE +L + + ED G + LA I E+LLK
Sbjct: 49 TPLHLAAQLGHLEIVEVLLK-YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA GH ++ VE + +N +++ N G T LHLAA ++E+ + K
Sbjct: 49 TPLHLAAMLGHLEI----VEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVEVLL-KH 102
Query: 150 PKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNE 126
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 95 AAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVG 154
AA +G D V R++ G + + + G+T LHLAA LG++E+ + K+ V
Sbjct: 21 AARAGQDDEV-RILTANGAD----VNANDYWGHTPLHLAAMLGHLEIVEVLL-KNGADVN 74
Query: 155 ARNKDSETPLFLAA 168
A TPL LAA
Sbjct: 75 ATGNTGRTPLHLAA 88
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMAS-- 147
T LH+AA H+DV+ E + ++ + + + ++ G TALH AA G+++ CR + S
Sbjct: 249 TPLHVAAERAHNDVM----EVLHKHGAKMNAL-DSLGQTALHRAALAGHLQTCRLLLSYG 303
Query: 148 KDPKLV 153
DP ++
Sbjct: 304 SDPSII 309
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 89 DTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASK 148
+TALH+AA + + L+E E + + G TALH+A NV + R + ++
Sbjct: 38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97
Query: 149 DPKLVGARNKDS-------------ETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSN 195
V AR S E PL AA G + L + H D + S
Sbjct: 98 GAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL--IEHGADIR-AQDSL 153
Query: 196 GDTILHAAI 204
G+T+LH I
Sbjct: 154 GNTVLHILI 162
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T L+LA A GH ++V E + +N +++ + + G T LHLAA +G++E+ + K
Sbjct: 49 TPLYLATAHGHLEIV----EVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIAEVLL-KH 102
Query: 150 PKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 103 GADVNAQDKFGKTAFDISIGNGNE 126
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCM 145
KS T LHLAA GH ++V L++ + + + +G T LHLAA G++E+ +
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGAD-----VNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 146 ASKDPKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 133 LKYGAD-VNAQDKFGKTAFDISIDNGNE 159
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIME 513
TPL + G LEI+E +L + + D +G + LA I E+LLK +
Sbjct: 49 TPLHLVVNNGHLEIIEVLLK-YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV- 106
Query: 514 NAFRKLDNQGNSALHYAA 531
NA +D QG + LH AA
Sbjct: 107 NA---MDYQGYTPLHLAA 121
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A G LEIVE +L + + D G + LA E I E+LLK
Sbjct: 82 TPLHLAAYRGHLEIVEVLLK-YGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 44/192 (22%)
Query: 94 LAAASGHSDVVCRLVETMGENESNILKIQNN-------RGNTALHLAAALGNVEMCRCMA 146
L ++G +D + L++ + E N+ + N+ RG TALH+A +
Sbjct: 55 LNLSAGRNDTIPILLD-IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV 113
Query: 147 SK-------------DPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHD--KDSSLG 191
K PK G E PL LAA + +H+L+ + K + L
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH---IVHYLTENGHKQADLR 170
Query: 192 RK-SNGDTILHA--AISGD-----------YFSLAFHIIRCYPD--LVNCVNENGLSPLH 235
R+ S G+T+LHA AI+ + Y L + +PD L +N +GLSPL
Sbjct: 171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM 230
Query: 236 ILA--GKPNAFR 245
+ A GK F+
Sbjct: 231 MAAKTGKIGIFQ 242
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 33.1 bits (74), Expect = 0.61, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 92 LHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASK--D 149
LH A + GH +V LV+ ++ + + T LH AAA G E+C+ + D
Sbjct: 81 LHNACSYGHYEVAELLVK-----HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135
Query: 150 PKLVGARNKDSETPLFL 166
P +N+D TPL L
Sbjct: 136 PT---KKNRDGNTPLDL 149
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 92 LHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMAS--KD 149
LH A + GH +V LV+ ++ + + T LH AAA G E+C+ + D
Sbjct: 79 LHNACSYGHYEVAELLVK-----HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Query: 150 PKLVGARNKDSETPLFL 166
P +N+D TPL L
Sbjct: 134 PT---KKNRDGNTPLDL 147
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 92 LHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMAS--KD 149
LH A + GH +V LV+ ++ + + T LH AAA G E+C+ + D
Sbjct: 83 LHNACSYGHYEVAELLVK-----HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137
Query: 150 PKLVGARNKDSETPLFL 166
P +N+D TPL L
Sbjct: 138 PT---KKNRDGNTPLDL 151
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 38/189 (20%)
Query: 94 LAAASGHSDVVCRLVETMGENESNILKIQNN-------RGNTALHLAAALGNVEMCRCMA 146
L ++G +D + L++ + E N+ + N+ RG TALH+A +
Sbjct: 53 LNLSNGRNDTIPVLLD-IAERTGNMREFINSPFRDIYYRGQTALHIAIERRCKHYVELLV 111
Query: 147 SK-------------DPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRK 193
++ PK G E PL LAA + L H K +
Sbjct: 112 AQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVNYLTENPHKKADMRRQD 171
Query: 194 SNGDTILHA--AISGD-----------YFSLAFHIIRCYPD--LVNCVNENGLSPLHILA 238
S G+T+LHA AI+ + Y L R +PD L +N +GLSPL + A
Sbjct: 172 SRGNTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAA 231
Query: 239 --GKPNAFR 245
GK F+
Sbjct: 232 KTGKIGIFQ 240
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMAS 147
++TALHLA S + +V+ + +N N+ K Q +G+TALH N E C +
Sbjct: 169 DETALHLAVRSVDRTSL-HIVDFLVQNSGNLDK-QTGKGSTALHYCCLTDNAE-CLKLLL 225
Query: 148 KDPKLVGARNKDSETPLFLA 167
+ + N+ ETPL +A
Sbjct: 226 RGKASIEIANESGETPLDIA 245
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 445 NTQQSRRKETPLLIATKTGVLEIVEKILDA-FPVAIQDEDANGKNVVLLAVEHRQTHIYE 503
N + S+ +T L++A G +++V+ +L V +QD+D G ++ A EH I
Sbjct: 176 NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD--GSTALMCACEHGHKEIAG 233
Query: 504 LLL 506
LLL
Sbjct: 234 LLL 236
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 118 ILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFL 177
++ I ++ GNTALH + + N + + + V +N+ +P+ L AL K
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 178 CLHFLSHDKDSSLGRKSN--GDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPL 234
L + ++ K++ G T L A+S + ++ C D VN +++G + L
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTAL 220
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 125 RGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGK 172
+G TALH AA + N + + + + +++D +TP+ LAA G+
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR 325
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENES 116
L E+A G D V+ +N AK K+ T LHLAA +GH +VV L+E +
Sbjct: 28 LLEAARAGQ-DDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD--- 82
Query: 117 NILKIQNNRGNTALHLAAALGNVEMCRCM 145
+ Q+ G TA ++ GN ++ +
Sbjct: 83 --VXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD 149
T LHLAA + H ++ VE + +N +++ I + G T LHL A G++E+ + K
Sbjct: 49 TPLHLAAMNDHLEI----VEVLLKNGADVNAI-DAIGETPLHLVAMYGHLEIVEVLL-KH 102
Query: 150 PKLVGARNKDSETPLFLAALNGKK 173
V A++K +T ++ NG +
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNE 126
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 57 LFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENES 116
L E+A G D V+ +N AK K+ T LHLAA +GH +VV L+E +
Sbjct: 10 LLEAARAGQ-DDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD--- 64
Query: 117 NILKIQNNRGNTALHLAAALGNVEMCRCM 145
+ Q+ G TA ++ GN ++ +
Sbjct: 65 --VNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
pdb|2QAE|B Chain B, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
Length = 468
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 29/175 (16%)
Query: 132 LAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLG 191
L AL E + M S K+VG N L + NGK+ C L S+G
Sbjct: 221 LVGALAKNEKMKFMTST--KVVGGTNNGDSVSLEVEGKNGKRETVTCEALL-----VSVG 273
Query: 192 RK--SNGDTILHAAIS---------GDYFSLAF-------HIIRCYPDLVNCVNENGLSP 233
R+ + G + ++ GD+F + ++ P L + + G++
Sbjct: 274 RRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGPMLAHKAEDEGVAC 333
Query: 234 LHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGTAKFPEN 288
ILAGKP G+ ++Y V + + + + K ++ KFP N
Sbjct: 334 AEILAGKPGHVN----YGVIPAVIYTMPEVASVGKSEDELKKEGVAYKVGKFPFN 384
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 40 LSTEDEEEKSMQMEIDNLFE-SAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAAS 98
L T DE K +Q E F +A GH + + E P A I A LAA +
Sbjct: 114 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAEN 173
Query: 99 GHSDVVCRLVETMGENESNILKIQN 123
GH V+ RL E + ++ +N
Sbjct: 174 GHLHVLNRLCELAPTEATAXIQAEN 198
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 89 DTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLA 133
DT LH+A G+ V RLV + L I NN T LHLA
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLA 53
>pdb|1HLM|A Chain A, Amino Acid Sequence Of A Globin From The Sea Cucumber
Caudina (Molpadia) Arenicola
Length = 159
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 306 LSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLGIGI 365
+S L+T DE+D E + + + + ++H N + LF K++M+A+ LG+G
Sbjct: 78 VSALMTTYIDEMDTEVLPELLATLTRTHDKNHVGKKN---YDLFGKVLMEAIKAELGVGF 134
Query: 366 WRISRIKEKKVRHKWA 381
K+V WA
Sbjct: 135 -------TKQVHDAWA 143
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 78 MSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGE-NESNILKIQNNRGNTALHLAAAL 136
+S++A+ TK + T LH+AA+ GH+++V L++ + N ++LK+ TALH A
Sbjct: 58 VSRDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM------TALHWATEH 110
Query: 137 GNVEMCRCM 145
+ E+ +
Sbjct: 111 NHQEVVELL 119
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507
TPL +A + G LEIVE +L A + +D GK +++++ + E+L K
Sbjct: 37 TPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 89
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMAS 147
E+ LHLA + + LV+ + +N + L + GNTALH AA L N C +
Sbjct: 171 EELVLHLAVKVANQASL-PLVDFIIQNGGH-LDAKAADGNTALHYAA-LYNQPDCLKLLL 227
Query: 148 KDPKLVGARNKDSETPLFLA 167
K LVG N+ ET L +A
Sbjct: 228 KGRALVGTVNEAGETALDIA 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,987,284
Number of Sequences: 62578
Number of extensions: 889974
Number of successful extensions: 2968
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 2510
Number of HSP's gapped (non-prelim): 361
length of query: 760
length of database: 14,973,337
effective HSP length: 106
effective length of query: 654
effective length of database: 8,340,069
effective search space: 5454405126
effective search space used: 5454405126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)