Query 004346
Match_columns 760
No_of_seqs 518 out of 4728
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 22:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 7.2E-52 2.5E-56 458.1 24.9 384 43-586 4-388 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3E-49 1E-53 437.1 20.5 368 27-539 25-393 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 6.8E-42 2.3E-46 364.3 27.6 286 52-540 24-318 (337)
4 1wdy_A 2-5A-dependent ribonucl 100.0 7.7E-41 2.6E-45 346.8 30.3 269 52-521 4-284 (285)
5 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-40 3.8E-45 356.8 30.1 290 40-531 11-321 (351)
6 1wdy_A 2-5A-dependent ribonucl 100.0 1.4E-39 4.9E-44 337.3 24.0 251 86-539 3-269 (285)
7 2fo1_E LIN-12 protein; beta-ba 100.0 8.2E-41 2.8E-45 360.6 13.0 262 83-539 89-362 (373)
8 3utm_A Tankyrase-1; tankyrase, 100.0 3.5E-40 1.2E-44 353.0 17.0 313 79-592 15-330 (351)
9 2xai_A ASB-9, ankyrin repeat a 100.0 3.9E-39 1.3E-43 329.7 23.8 246 87-536 2-251 (261)
10 3d9h_A CDNA FLJ77766, highly s 100.0 6.3E-39 2.2E-43 332.4 24.2 184 48-242 10-202 (285)
11 3d9h_A CDNA FLJ77766, highly s 100.0 1.4E-38 4.7E-43 329.9 24.0 248 85-533 12-265 (285)
12 3ljn_A Hypothetical protein; a 100.0 5.7E-39 2E-43 345.6 19.4 266 77-539 9-305 (364)
13 1oy3_D Transcription factor in 100.0 3E-38 1E-42 327.0 20.7 257 81-535 2-270 (282)
14 1yyh_A HN1;, notch 1, ankyrin 100.0 8.6E-38 2.9E-42 318.2 21.1 155 80-242 2-169 (253)
15 2fo1_E LIN-12 protein; beta-ba 100.0 2.3E-38 7.8E-43 341.5 17.3 262 48-510 89-370 (373)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 6.3E-38 2.1E-42 319.2 17.8 224 119-539 3-239 (253)
17 1k1a_A B-cell lymphoma 3-encod 100.0 4.3E-37 1.5E-41 310.5 21.2 153 82-241 3-161 (241)
18 3ljn_A Hypothetical protein; a 100.0 2.9E-37 9.8E-42 332.3 20.6 197 45-261 12-235 (364)
19 2xai_A ASB-9, ankyrin repeat a 100.0 7.1E-37 2.4E-41 312.9 22.3 176 53-242 3-178 (261)
20 4g8k_A 2-5A-dependent ribonucl 100.0 1.3E-36 4.6E-41 323.4 24.3 200 31-242 36-251 (337)
21 1k1a_A B-cell lymphoma 3-encod 100.0 9.3E-37 3.2E-41 308.0 21.1 224 119-540 2-233 (241)
22 3b7b_A Euchromatic histone-lys 100.0 3.5E-36 1.2E-40 303.1 24.7 84 448-536 140-223 (237)
23 3b7b_A Euchromatic histone-lys 100.0 4.8E-36 1.6E-40 302.1 25.1 154 80-242 3-156 (237)
24 1s70_B 130 kDa myosin-binding 100.0 4.3E-37 1.5E-41 321.4 17.1 264 59-532 4-274 (299)
25 3aji_A 26S proteasome non-ATPa 100.0 8.5E-36 2.9E-40 299.0 22.7 227 85-510 3-229 (231)
26 4b93_B Ankyrin repeat domain-c 100.0 1.8E-36 6.2E-41 310.3 16.2 155 83-242 6-164 (269)
27 2dzn_A Probable 26S proteasome 100.0 3.1E-35 1.1E-39 294.2 21.8 128 88-221 2-132 (228)
28 3aji_A 26S proteasome non-ATPa 100.0 1.1E-35 3.7E-40 298.2 18.1 219 123-539 3-221 (231)
29 3eu9_A Huntingtin-interacting 100.0 8.6E-35 2.9E-39 293.1 24.6 231 82-510 3-234 (240)
30 2dzn_A Probable 26S proteasome 100.0 4.8E-35 1.6E-39 292.8 22.5 214 126-534 2-219 (228)
31 4b93_B Ankyrin repeat domain-c 100.0 1E-35 3.4E-40 304.8 15.9 218 120-535 5-230 (269)
32 3kea_A K1L; tropism, ANK repea 100.0 4.1E-35 1.4E-39 303.6 18.9 165 61-242 7-173 (285)
33 1sw6_A Regulatory protein SWI6 100.0 5.3E-35 1.8E-39 309.0 13.2 279 63-534 29-327 (327)
34 1oy3_D Transcription factor in 100.0 5.1E-34 1.7E-38 295.2 20.1 185 49-242 5-204 (282)
35 3kea_A K1L; tropism, ANK repea 100.0 4.9E-34 1.7E-38 295.5 18.6 227 98-540 9-238 (285)
36 2f8y_A Notch homolog 1, transl 100.0 1.2E-33 4E-38 281.7 19.9 214 99-510 2-215 (223)
37 1ikn_D Protein (I-kappa-B-alph 100.0 6.1E-34 2.1E-38 286.5 12.5 225 83-535 3-231 (236)
38 3eu9_A Huntingtin-interacting 100.0 4.1E-33 1.4E-37 280.8 18.5 223 119-539 2-226 (240)
39 1s70_B 130 kDa myosin-binding 100.0 4.5E-33 1.5E-37 290.9 17.4 174 51-242 38-211 (299)
40 2rfa_A Transient receptor pote 100.0 1.4E-31 4.8E-36 268.4 22.3 145 87-240 2-164 (232)
41 1sw6_A Regulatory protein SWI6 100.0 2.9E-33 1E-37 295.7 9.8 193 31-239 30-267 (327)
42 2f8y_A Notch homolog 1, transl 100.0 5.7E-31 2E-35 262.2 22.3 210 37-264 8-218 (223)
43 2rfa_A Transient receptor pote 100.0 9.9E-31 3.4E-35 262.2 21.1 201 53-265 3-225 (232)
44 3hra_A Ankyrin repeat family p 100.0 1.7E-30 5.9E-35 254.2 21.8 193 51-260 3-201 (201)
45 3hra_A Ankyrin repeat family p 100.0 3.6E-30 1.2E-34 251.9 22.9 150 85-241 2-151 (201)
46 4gpm_A Engineered protein OR26 100.0 2E-30 6.9E-35 244.8 20.0 157 54-221 5-161 (169)
47 4gpm_A Engineered protein OR26 100.0 3E-30 1E-34 243.7 19.9 159 90-265 6-164 (169)
48 2pnn_A Transient receptor pote 100.0 3.1E-31 1E-35 273.0 13.6 157 80-241 5-195 (273)
49 2etb_A Transient receptor pote 100.0 7.3E-31 2.5E-35 267.5 15.2 142 88-239 2-181 (256)
50 2etb_A Transient receptor pote 100.0 5.1E-30 1.8E-34 261.2 17.3 200 52-265 1-249 (256)
51 1ikn_D Protein (I-kappa-B-alph 100.0 9.3E-31 3.2E-35 263.2 11.2 201 48-264 3-211 (236)
52 2pnn_A Transient receptor pote 100.0 7.4E-30 2.5E-34 262.7 15.7 206 45-262 5-258 (273)
53 3jxi_A Vanilloid receptor-rela 100.0 1.2E-29 4.1E-34 259.1 14.4 201 51-265 3-253 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 2.8E-29 9.5E-34 256.4 13.6 63 447-510 171-249 (260)
55 4hbd_A KN motif and ankyrin re 100.0 9.7E-29 3.3E-33 254.3 13.4 129 87-221 75-208 (276)
56 2aja_A Ankyrin repeat family p 100.0 2.6E-30 8.8E-35 275.6 1.5 182 53-266 65-254 (376)
57 2rfm_A Putative ankyrin repeat 100.0 9.8E-28 3.4E-32 232.8 19.2 164 80-260 27-190 (192)
58 3v30_A DNA-binding protein rfx 100.0 7.7E-28 2.6E-32 229.0 17.1 170 53-233 2-171 (172)
59 4hbd_A KN motif and ankyrin re 99.9 2.7E-28 9.2E-33 251.0 11.8 191 54-260 77-273 (276)
60 3v31_A Ankyrin repeat family A 99.9 4.2E-27 1.4E-31 222.7 17.8 159 87-262 2-160 (167)
61 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.5E-27 8.4E-32 223.1 16.1 157 53-220 5-161 (162)
62 2vge_A RELA-associated inhibit 99.9 4.8E-29 1.7E-33 248.7 3.6 112 104-221 1-112 (229)
63 1ihb_A P18-INK4C(INK6), cyclin 99.9 6.2E-27 2.1E-31 220.3 17.7 148 86-243 3-150 (162)
64 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.2E-26 4.1E-31 220.1 18.7 155 53-218 14-168 (169)
65 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.9E-26 6.5E-31 218.7 20.0 148 85-242 11-158 (169)
66 3v30_A DNA-binding protein rfx 99.9 7.2E-27 2.5E-31 222.3 16.8 162 88-265 2-163 (172)
67 3v31_A Ankyrin repeat family A 99.9 1.2E-26 4E-31 219.7 16.6 158 53-221 3-160 (167)
68 2vge_A RELA-associated inhibit 99.9 1.7E-29 5.7E-34 252.0 -3.5 159 70-240 2-166 (229)
69 2rfm_A Putative ankyrin repeat 99.9 6.2E-27 2.1E-31 227.1 14.7 163 46-219 28-190 (192)
70 2aja_A Ankyrin repeat family p 99.9 5.1E-29 1.7E-33 265.6 -0.4 174 50-242 89-266 (376)
71 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.9E-26 1.3E-30 213.4 18.5 154 53-218 2-155 (156)
72 1awc_B Protein (GA binding pro 99.9 8.4E-26 2.9E-30 210.4 19.4 150 54-215 3-152 (153)
73 1awc_B Protein (GA binding pro 99.9 5E-26 1.7E-30 211.9 17.7 151 88-256 2-152 (153)
74 3twr_A Tankyrase-2; ankyrin re 99.9 2.1E-26 7E-31 217.5 15.2 160 85-261 5-164 (165)
75 3f6q_A Integrin-linked protein 99.9 2.5E-26 8.4E-31 220.1 15.6 168 52-230 4-171 (179)
76 3f6q_A Integrin-linked protein 99.9 3.4E-26 1.2E-30 219.2 15.9 164 86-265 3-166 (179)
77 3twr_A Tankyrase-2; ankyrin re 99.9 3.3E-26 1.1E-30 216.1 15.1 160 50-220 5-164 (165)
78 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.5E-25 5.1E-30 209.4 16.2 154 88-259 2-155 (156)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 5.7E-26 2E-30 228.5 8.6 178 52-242 4-193 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6E-25 2E-29 221.0 13.7 171 85-273 2-175 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 8.5E-25 2.9E-29 199.1 12.7 134 78-221 2-136 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 8.7E-25 3E-29 204.2 10.2 146 82-238 6-152 (156)
83 3t8k_A Uncharacterized protein 99.9 3.5E-25 1.2E-29 212.6 7.1 160 53-226 6-183 (186)
84 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.4E-22 4.6E-27 181.5 16.8 126 87-221 1-126 (126)
85 2jab_A H10-2-G3; HER2, darpin, 99.9 5.2E-23 1.8E-27 187.2 13.7 126 85-219 11-136 (136)
86 3t8k_A Uncharacterized protein 99.9 7.6E-24 2.6E-28 203.3 8.5 155 88-261 6-178 (186)
87 1d9s_A Cyclin-dependent kinase 99.9 3.9E-23 1.3E-27 188.0 11.6 131 119-262 5-136 (136)
88 1bi7_B P16INK4A, MTS1, multipl 99.9 3.6E-23 1.2E-27 193.1 10.3 144 48-203 7-151 (156)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 5.1E-22 1.7E-26 180.6 15.5 128 48-183 9-136 (136)
90 3c5r_A BARD-1, BRCA1-associate 99.9 7E-23 2.4E-27 186.6 8.0 129 83-220 5-133 (137)
91 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6E-21 2.1E-25 170.7 15.2 125 53-185 2-126 (126)
92 3deo_A Signal recognition part 99.9 2.2E-21 7.4E-26 186.3 13.0 141 49-218 40-181 (183)
93 3aaa_C Myotrophin, protein V-1 99.9 1.4E-21 4.9E-26 174.2 10.1 112 85-205 4-115 (123)
94 3deo_A Signal recognition part 99.9 8.9E-22 3E-26 189.0 9.2 140 85-259 41-181 (183)
95 3ui2_A Signal recognition part 99.8 3.3E-21 1.1E-25 194.1 13.6 143 50-221 42-185 (244)
96 3ehr_A Osteoclast-stimulating 99.8 6.2E-22 2.1E-26 196.6 7.9 137 84-230 69-206 (222)
97 3c5r_A BARD-1, BRCA1-associate 99.8 1.6E-21 5.4E-26 177.6 9.6 117 121-242 5-121 (137)
98 3ui2_A Signal recognition part 99.8 1.7E-21 5.9E-26 196.2 10.5 144 85-263 42-186 (244)
99 2b0o_E UPLC1; arfgap, structur 99.8 4.1E-21 1.4E-25 199.3 13.3 140 87-242 150-298 (301)
100 2b0o_E UPLC1; arfgap, structur 99.8 2.7E-21 9.1E-26 200.7 11.8 140 53-209 151-299 (301)
101 3aaa_C Myotrophin, protein V-1 99.8 1.5E-20 5.1E-25 167.6 10.6 114 51-172 5-118 (123)
102 3ehr_A Osteoclast-stimulating 99.8 2.3E-20 7.9E-25 185.2 9.2 134 45-186 65-199 (222)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.5E-19 5.2E-24 152.1 12.2 92 87-184 1-92 (93)
104 3jue_A Arfgap with coiled-coil 99.8 1.4E-19 4.9E-24 191.8 13.7 148 85-241 196-348 (368)
105 3jue_A Arfgap with coiled-coil 99.8 2.4E-19 8.1E-24 190.2 14.4 147 52-206 198-347 (368)
106 1dcq_A PYK2-associated protein 99.8 7E-19 2.4E-23 180.3 17.1 127 90-220 132-262 (278)
107 1dcq_A PYK2-associated protein 99.8 8.4E-19 2.9E-23 179.7 15.9 128 53-186 130-264 (278)
108 3lvq_E ARF-GAP with SH3 domain 99.8 5.3E-19 1.8E-23 197.2 14.9 136 88-239 132-276 (497)
109 3lvq_E ARF-GAP with SH3 domain 99.8 7.2E-19 2.5E-23 196.2 15.4 135 54-205 133-276 (497)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.2E-18 4.2E-23 146.6 12.3 93 125-221 1-93 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.8 5.5E-19 1.9E-23 155.3 8.5 107 84-199 5-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.3E-18 4.5E-23 152.8 8.7 109 121-234 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 6.3E-17 2.2E-21 140.7 10.0 93 81-179 17-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 5.5E-16 1.9E-20 134.7 10.5 94 118-215 16-109 (110)
115 3rko_J NADH-quinone oxidoreduc 29.9 1.5E+02 0.0053 26.7 7.6 14 644-657 5-18 (184)
116 4ev6_A Magnesium transport pro 25.9 62 0.0021 32.7 4.9 21 688-708 281-301 (339)
117 1vry_A Glycine receptor alpha- 24.9 1.1E+02 0.0038 23.1 4.7 39 702-740 19-57 (76)
118 2iub_A CORA, divalent cation t 24.0 50 0.0017 33.8 3.7 20 688-707 305-324 (363)
119 1gp8_A Protein (scaffolding pr 21.4 68 0.0023 20.5 2.4 19 54-72 14-32 (40)
120 3rhw_A Avermectin-sensitive gl 21.2 3.8E+02 0.013 26.9 9.8 37 700-736 258-294 (347)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.2e-52 Score=458.05 Aligned_cols=384 Identities=20% Similarity=0.226 Sum_probs=315.6
Q ss_pred chhhhhhhccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccc
Q 004346 43 EDEEEKSMQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQ 122 (760)
Q Consensus 43 ~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 122 (760)
+...+...+.+.||||.||..|+.+.++.+++. +.+++..+..|.||||+||..|+.+++++|++.+++ ++.+
T Consensus 4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~ 76 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-----VNAK 76 (437)
T ss_dssp -----------CCHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-----SSCC
T ss_pred CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----CCCC
Confidence 445566677889999999999999999999998 788888899999999999999999999999999988 8899
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHH
Q 004346 123 NNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHA 202 (760)
Q Consensus 123 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~ 202 (760)
|..|+||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+
T Consensus 77 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~ 152 (437)
T 1n11_A 77 AKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEAS---QACMTKKGFTPLHV 152 (437)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC---CcCCCCCCCCHHHH
Confidence 99999999999999999999999999999 899999999999999999999999999999877 56688899999999
Q ss_pred HHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCC
Q 004346 203 AISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGT 282 (760)
Q Consensus 203 A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (760)
|+..|+.+++++|++++++ ++..+..|.||||+|+..++ .++++.|+..|++++..+..
T Consensus 153 A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~~~~~------------- 211 (437)
T 1n11_A 153 AAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNN-------LDIVKLLLPRGGSPHSPAWN------------- 211 (437)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTC-------HHHHHHHGGGTCCSCCCCTT-------------
T ss_pred HHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCCCcCCC-------------
Confidence 9999999999999999998 99999999999999999997 79999999998866542111
Q ss_pred CCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 004346 283 AKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLG 362 (760)
Q Consensus 283 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (760)
+.+|++ .++ .
T Consensus 212 -------------------------------------------------g~t~L~----------------~A~-----~ 221 (437)
T 1n11_A 212 -------------------------------------------------GYTPLH----------------IAA-----K 221 (437)
T ss_dssp -------------------------------------------------CCCHHH----------------HHH-----H
T ss_pred -------------------------------------------------CCCHHH----------------HHH-----H
Confidence 011111 000 0
Q ss_pred cchhhHHHHHHHHHHhHHHHHHHHHHHhcc-ccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCc
Q 004346 363 IGIWRISRIKEKKVRHKWAYLVMKELVQCA-SLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTP 441 (760)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~-~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 441 (760)
....++++.|++.+ +.+..+..|.||++.++..+. ..+++++.+.+.
T Consensus 222 ----------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~----------~~~v~~Ll~~~~------ 269 (437)
T 1n11_A 222 ----------------QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH----------AEMVALLLSKQA------ 269 (437)
T ss_dssp ----------------TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----------HHHHHHHHTTTC------
T ss_pred ----------------cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCC----------HHHHHHHHhcCC------
Confidence 11247889999987 566678889999988875433 334444444433
Q ss_pred cchhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHhccchhhhhhccccC
Q 004346 442 EKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENAFRKLDN 521 (760)
Q Consensus 442 ~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~in~~D~ 521 (760)
..+..|..|.||||+|+..|+.+++++|+++ +.+++.+|..|+||||+|+.+|+.++|++|+++|+ ++|.+|.
T Consensus 270 --~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----d~n~~~~ 342 (437)
T 1n11_A 270 --NGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA----DVNAKTK 342 (437)
T ss_dssp --CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC----CTTCCCT
T ss_pred --CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC----CCCCCCC
Confidence 2346788999999999999999999999985 89999999999999999999999999999999999 9999999
Q ss_pred CCCchhhHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHHhcCCccchhccccCCCCccchhhhhh
Q 004346 522 QGNSALHYAAMFENHRPSSLIPGAALQMQWEIKWYKYVKESMPQNFFVRYNNNGQTPKELFTETH 586 (760)
Q Consensus 522 ~G~T~LhlAa~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~tp~~i~~~~~ 586 (760)
.|+||||+|++.|+.+++++| ++. ....+.+|.+|+||++++.+..
T Consensus 343 ~g~t~L~~A~~~g~~~iv~~L----------------l~~---ga~~~~~~~~g~t~l~~A~~~g 388 (437)
T 1n11_A 343 LGYSPLHQAAQQGHTDIVTLL----------------LKN---GASPNEVSSDGTTPLAIAKRLG 388 (437)
T ss_dssp TSCCHHHHHHHTTCHHHHHHH----------------HHT---TCCSCCCCSSSCCHHHHHHHTT
T ss_pred CCCCHHHHHHHCChHHHHHHH----------------HHC---cCCCCCCCCCCCCHHHHHHHcC
Confidence 999999999999987766211 111 1224678999999999986653
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3e-49 Score=437.06 Aligned_cols=368 Identities=21% Similarity=0.195 Sum_probs=311.7
Q ss_pred hccchhhhcccCCCCCchhhhhhhccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHH
Q 004346 27 DDISGVEEMDSNSLSTEDEEEKSMQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCR 106 (760)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~ 106 (760)
+.++-++.+... +.+.+..+..+.||||.||..|+.+.++.|++. +.+++.+|..|+||||+|+..|+.++|++
T Consensus 25 g~~~~v~~Ll~~----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 98 (437)
T 1n11_A 25 GHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKL 98 (437)
T ss_dssp TCHHHHHHHHHT----TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 444444444433 333444556778999999999999999999998 78888899999999999999999999999
Q ss_pred HHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCC
Q 004346 107 LVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDK 186 (760)
Q Consensus 107 Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 186 (760)
|+++|++ ++..|..|.||||+|+..|+.++++.|++.+++ .+..+..|.||||+|+..|+.+++++|++.+.+
T Consensus 99 Ll~~ga~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~- 171 (437)
T 1n11_A 99 LLENNAN-----PNLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAH- 171 (437)
T ss_dssp HHHHTCC-----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred HHhCCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-
Confidence 9999988 889999999999999999999999999999998 788999999999999999999999999999887
Q ss_pred CCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhh
Q 004346 187 DSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDEL 266 (760)
Q Consensus 187 ~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~ 266 (760)
++..+..|.||||+|+..|+.+++++|++++++ ++..+.+|.||||+|+..++ .++++.|+..|++++..
T Consensus 172 --~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~~~ 241 (437)
T 1n11_A 172 --PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQ-------VEVARSLLQYGGSANAE 241 (437)
T ss_dssp --TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTCC
T ss_pred --CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCCCCC
Confidence 777899999999999999999999999999998 88999999999999999997 79999999999876652
Q ss_pred hhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchh
Q 004346 267 REEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTF 346 (760)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (760)
+..+ .+|++
T Consensus 242 ~~~g--------------------------------------------------------------~t~L~--------- 250 (437)
T 1n11_A 242 SVQG--------------------------------------------------------------VTPLH--------- 250 (437)
T ss_dssp CTTC--------------------------------------------------------------CCHHH---------
T ss_pred CCCC--------------------------------------------------------------CCHHH---------
Confidence 2111 11111
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhcc-ccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 004346 347 VLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCA-SLYKYDDNGQNPENSRLDNKHGEPFLVPGARPV 425 (760)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~-~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~ 425 (760)
.++ . ....+++++|++++ +.+..|..|.||++.++..+. ..
T Consensus 251 -------~A~-----~----------------~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~----------~~ 292 (437)
T 1n11_A 251 -------LAA-----Q----------------EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH----------VP 292 (437)
T ss_dssp -------HHH-----H----------------TTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC----------HH
T ss_pred -------HHH-----H----------------CCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC----------HH
Confidence 000 0 11247899999987 566678899999998875432 23
Q ss_pred CCCccccccccccCCccchhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHH
Q 004346 426 PENTETSQKNIVLSTPEKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELL 505 (760)
Q Consensus 426 ~~~~l~~~~~~~~~~~~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~L 505 (760)
++++|.+++. ..+.+|..|+||||+|+..|+.++|++|++ .++++|.+|..|+||||+|+++|+.++|++|
T Consensus 293 ~~~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g~~~iv~~L 363 (437)
T 1n11_A 293 VADVLIKHGV--------MVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363 (437)
T ss_dssp HHHHHHHHTC--------CTTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCc--------cCCCCCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCChHHHHHHH
Confidence 3444444433 335788899999999999999999999997 4899999999999999999999999999999
Q ss_pred HhccchhhhhhccccCCCCchhhHHhhcCCCCCC
Q 004346 506 LKKKMIMENAFRKLDNQGNSALHYAAMFENHRPS 539 (760)
Q Consensus 506 l~~~a~~~~~in~~D~~G~T~LhlAa~~g~~~~~ 539 (760)
+++|+ +++.+|.+|+||||+|++.|+.+++
T Consensus 364 l~~ga----~~~~~~~~g~t~l~~A~~~g~~~~~ 393 (437)
T 1n11_A 364 LKNGA----SPNEVSSDGTTPLAIAKRLGYISVT 393 (437)
T ss_dssp HHTTC----CSCCCCSSSCCHHHHHHHTTCHHHH
T ss_pred HHCcC----CCCCCCCCCCCHHHHHHHcCcHHHH
Confidence 99999 9999999999999999999986555
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.8e-42 Score=364.33 Aligned_cols=286 Identities=22% Similarity=0.226 Sum_probs=248.6
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCC-CCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHH
Q 004346 52 MEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITK-SEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTAL 130 (760)
Q Consensus 52 ~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpL 130 (760)
.+.|+|+.|+..|+.+.|+.||+. |++++.++. .|+||||+||..|+.++|++|+++|++ ++.++..+.+|+
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-----~~~~~~~~~~~~ 96 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-----PVLRKKNGATPF 96 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-----hhhhccCCCchh
Confidence 356899999999999999999998 788887765 599999999999999999999999998 889999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCC-------CcccCCCCCChHHHHH
Q 004346 131 HLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKD-------SSLGRKSNGDTILHAA 203 (760)
Q Consensus 131 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~-------~~~~~~~~g~t~Lh~A 203 (760)
|.++..++..++..++..+++ ++.+|..|.||||+|+..|+.+++++|++.+++.. .....+..|.||||+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A 175 (337)
T 4g8k_A 97 ILAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175 (337)
T ss_dssp HHHHHHTCHHHHHHHHTTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHH
T ss_pred HHHHhcccchhhHHhhhccch-hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHH
Confidence 999999999999999999999 89999999999999999999999999999988632 1223566799999999
Q ss_pred HHcCCHHHHHHHHHh-CCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCC
Q 004346 204 ISGDYFSLAFHIIRC-YPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGT 282 (760)
Q Consensus 204 ~~~~~~~iv~~Ll~~-~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (760)
+..|+.+++++||++ +++ ++.+|..|.||+|.++..+.. ...
T Consensus 176 ~~~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~---~~~--------------------------------- 218 (337)
T 4g8k_A 176 AEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDD---SDV--------------------------------- 218 (337)
T ss_dssp HHHTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCT---TTH---------------------------------
T ss_pred HHCCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCc---ccH---------------------------------
Confidence 999999999999976 566 999999999999998765431 000
Q ss_pred CCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 004346 283 AKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLG 362 (760)
Q Consensus 283 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (760)
T Consensus 219 -------------------------------------------------------------------------------- 218 (337)
T 4g8k_A 219 -------------------------------------------------------------------------------- 218 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCcc
Q 004346 363 IGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPE 442 (760)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 442 (760)
.+++++|++++ .++
T Consensus 219 -------------------~~i~~lLl~~g---------ad~-------------------------------------- 232 (337)
T 4g8k_A 219 -------------------EAITHLLLDHG---------ADV-------------------------------------- 232 (337)
T ss_dssp -------------------HHHHHHHHHTT---------CCT--------------------------------------
T ss_pred -------------------HHHHHHHHHCC---------CCC--------------------------------------
Confidence 13566677663 111
Q ss_pred chhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHhccchhhhhhccccCC
Q 004346 443 KKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENAFRKLDNQ 522 (760)
Q Consensus 443 ~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~in~~D~~ 522 (760)
|.+|.+|+||||+|+..|+.++|+.|++..+.++|.+|.+|+||||+|+++|+.++|++|+++|+ ++|.
T Consensus 233 ---n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA----d~n~---- 301 (337)
T 4g8k_A 233 ---NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA----STDC---- 301 (337)
T ss_dssp ---TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC----SSTT----
T ss_pred ---CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCC----
Confidence 35667899999999999999999999987899999999999999999999999999999999999 6654
Q ss_pred CCchhhHHhhcCCCCCCC
Q 004346 523 GNSALHYAAMFENHRPSS 540 (760)
Q Consensus 523 G~T~LhlAa~~g~~~~~~ 540 (760)
.||||+|++.|+.++++
T Consensus 302 -~~~L~~A~~~~~~~iv~ 318 (337)
T 4g8k_A 302 -GDLVMTARRNYDHSLVK 318 (337)
T ss_dssp -CCHHHHHHHTTCHHHHH
T ss_pred -CCHHHHHHHcCCHHHHH
Confidence 56999999999987774
No 4
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.7e-41 Score=346.78 Aligned_cols=269 Identities=23% Similarity=0.236 Sum_probs=240.1
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHH
Q 004346 52 MEIDNLFESAMRGHWDHIVQAYESNPMSQEAKI-TKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTAL 130 (760)
Q Consensus 52 ~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~-d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpL 130 (760)
.+.++|+.|+..|+.+.++.+++. +.+++.. +..|+||||+|+..|+.+++++|+++|++ ++.+|..|.|||
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L 76 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-----PVLRKKNGATPF 76 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CcccCCCCCCHH
Confidence 467999999999999999999998 5666666 78899999999999999999999999988 888999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccC----------CCCCChHH
Q 004346 131 HLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGR----------KSNGDTIL 200 (760)
Q Consensus 131 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~----------~~~g~t~L 200 (760)
|+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+.+ ++.. +..|.|||
T Consensus 77 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 77 LLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN---VNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCCCCHHHHHTTCCCCCHH
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC---cccccccHHHHHhhccCCCcHH
Confidence 999999999999999999999 899999999999999999999999999999887 4434 78899999
Q ss_pred HHHHHcCCHHHHHHHHHh-CCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCC
Q 004346 201 HAAISGDYFSLAFHIIRC-YPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGS 279 (760)
Q Consensus 201 h~A~~~~~~~iv~~Ll~~-~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 279 (760)
|.|+..|+.+++++|++. +.+ ++..|..|.||||+|+..++.. .
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~---~------------------------------- 197 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDS---D------------------------------- 197 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTT---T-------------------------------
T ss_pred HHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccc---h-------------------------------
Confidence 999999999999999998 666 9999999999999999987520 0
Q ss_pred CCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHH
Q 004346 280 HGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLI 359 (760)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (760)
T Consensus 198 -------------------------------------------------------------------------------- 197 (285)
T 1wdy_A 198 -------------------------------------------------------------------------------- 197 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccC
Q 004346 360 VLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLS 439 (760)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 439 (760)
..+++++|++++ .++
T Consensus 198 ---------------------~~~i~~~Ll~~g---------~~~----------------------------------- 212 (285)
T 1wdy_A 198 ---------------------VEAITHLLLDHG---------ADV----------------------------------- 212 (285)
T ss_dssp ---------------------HHHHHHHHHHTT---------CCS-----------------------------------
T ss_pred ---------------------HHHHHHHHHHcC---------CCC-----------------------------------
Confidence 024666777663 111
Q ss_pred CccchhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHhccchhhhhhccc
Q 004346 440 TPEKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENAFRKL 519 (760)
Q Consensus 440 ~~~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~in~~ 519 (760)
+.+|..|.||||+|+..|+.+++++|++..|.+++.+|..|+||||+|++.|+.+++++|+++|+ +++.+
T Consensus 213 ------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga----~~~~~ 282 (285)
T 1wdy_A 213 ------NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA----STDCG 282 (285)
T ss_dssp ------SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS----CSCCS
T ss_pred ------CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC----CCCcc
Confidence 24566899999999999999999999987899999999999999999999999999999999999 88888
Q ss_pred cC
Q 004346 520 DN 521 (760)
Q Consensus 520 D~ 521 (760)
|.
T Consensus 283 d~ 284 (285)
T 1wdy_A 283 DL 284 (285)
T ss_dssp SC
T ss_pred cc
Confidence 74
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-40 Score=356.84 Aligned_cols=290 Identities=17% Similarity=0.135 Sum_probs=251.3
Q ss_pred CCCchhhhhhhccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCcccc
Q 004346 40 LSTEDEEEKSMQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNIL 119 (760)
Q Consensus 40 ~~~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 119 (760)
..+........+.+.++|+.||..|+.+.++.+|... +.+.+..|..|+||||+||..|+.++|++|+++|++ +
T Consensus 11 ~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~ 84 (351)
T 3utm_A 11 ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-----V 84 (351)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----T
T ss_pred cCCceeeeeeccccchhHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----C
Confidence 3455556667778889999999999999999999864 567788899999999999999999999999999988 8
Q ss_pred ccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChH
Q 004346 120 KIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTI 199 (760)
Q Consensus 120 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~ 199 (760)
+.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++..+..|.||
T Consensus 85 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~~~ 160 (351)
T 3utm_A 85 HAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD---PTLVNCHGKSA 160 (351)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CccccCCCCcc
Confidence 89999999999999999999999999999999 899999999999999999999999999999887 77789999999
Q ss_pred HHHH---------------------HHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHh
Q 004346 200 LHAA---------------------ISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLY 258 (760)
Q Consensus 200 Lh~A---------------------~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~ 258 (760)
+|.| +..+..+.+..++..... ....+..|.||||+|+..++. .
T Consensus 161 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~----~---------- 225 (351)
T 3utm_A 161 VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHP----K---------- 225 (351)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCST----T----------
T ss_pred hHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCc----c----------
Confidence 8765 456666777777766655 556778899999999987641 0
Q ss_pred cccCchhhhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCC
Q 004346 259 DCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHF 338 (760)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (760)
T Consensus 226 -------------------------------------------------------------------------------- 225 (351)
T 3utm_A 226 -------------------------------------------------------------------------------- 225 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCC
Q 004346 339 CPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFL 418 (760)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~ 418 (760)
..+++++|++++ .++
T Consensus 226 ------------------------------------------~~~~~~~Ll~~g---------~~~-------------- 240 (351)
T 3utm_A 226 ------------------------------------------RKQVAELLLRKG---------ANV-------------- 240 (351)
T ss_dssp ------------------------------------------HHHHHHHHHHTT---------CCT--------------
T ss_pred ------------------------------------------HHHHHHHHHHcC---------CCc--------------
Confidence 124666666663 111
Q ss_pred CCCCCCCCCCccccccccccCCccchhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCc
Q 004346 419 VPGARPVPENTETSQKNIVLSTPEKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQ 498 (760)
Q Consensus 419 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~ 498 (760)
+.+|..|+||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+.+|+
T Consensus 241 ---------------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~ 292 (351)
T 3utm_A 241 ---------------------------NEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGH 292 (351)
T ss_dssp ---------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ---------------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCc
Confidence 2456689999999999999999999997 589999999999999999999999
Q ss_pred HHHHHHHHhccchhhhhhccccCCCCchhhHHh
Q 004346 499 THIYELLLKKKMIMENAFRKLDNQGNSALHYAA 531 (760)
Q Consensus 499 ~~iv~~Ll~~~a~~~~~in~~D~~G~T~LhlAa 531 (760)
.+++++|+++|+ +++.+|..|+||||+|.
T Consensus 293 ~~~v~~Ll~~ga----d~~~~~~~g~tal~~a~ 321 (351)
T 3utm_A 293 LQTCRLLLSYGS----DPSIISLQGFTAAQMGN 321 (351)
T ss_dssp HHHHHHHHHTTC----CTTCCCTTSCCHHHHSC
T ss_pred HHHHHHHHHcCC----CCCCcCCCCCChhhhhh
Confidence 999999999999 99999999999999984
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-39 Score=337.25 Aligned_cols=251 Identities=21% Similarity=0.233 Sum_probs=224.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccc-cCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHH
Q 004346 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQ-NNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPL 164 (760)
Q Consensus 86 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 164 (760)
.+|.||||.|++.|+.+++++|++.+.+ ++.+ +..|+||||+|+..|+.+++++|++.|++ ++.+|..|.|||
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L 76 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGAN-----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPF 76 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHH
Confidence 3588999999999999999999999877 6666 88899999999999999999999999999 899999999999
Q ss_pred HHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccc----------ccCCCcHH
Q 004346 165 FLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCV----------NENGLSPL 234 (760)
Q Consensus 165 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~----------d~~g~tpL 234 (760)
|+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.. +..|.|||
T Consensus 77 ~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 77 LLAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC---TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCHH
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-cccccccHHHHHhhccCCCcHH
Confidence 999999999999999999887 778899999999999999999999999999988 7766 78899999
Q ss_pred HHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCC
Q 004346 235 HILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPK 314 (760)
Q Consensus 235 ~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 314 (760)
|+|+..++ .+
T Consensus 153 ~~A~~~~~-------~~--------------------------------------------------------------- 162 (285)
T 1wdy_A 153 MDAAEKGH-------VE--------------------------------------------------------------- 162 (285)
T ss_dssp HHHHHHTC-------HH---------------------------------------------------------------
T ss_pred HHHHHcCC-------HH---------------------------------------------------------------
Confidence 99999886 33
Q ss_pred CCCCcCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhcccc
Q 004346 315 DELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASL 394 (760)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~ 394 (760)
+++.|+++.
T Consensus 163 ---------------------------------------------------------------------~v~~Ll~~~-- 171 (285)
T 1wdy_A 163 ---------------------------------------------------------------------VLKILLDEM-- 171 (285)
T ss_dssp ---------------------------------------------------------------------HHHHHHHTS--
T ss_pred ---------------------------------------------------------------------HHHHHHHhc--
Confidence 444454431
Q ss_pred ccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCccchhcccccCCCcHHHHHHhcCh----HHHHHH
Q 004346 395 YKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPEKKNTQQSRRKETPLLIATKTGV----LEIVEK 470 (760)
Q Consensus 395 ~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~g~tpLh~Aa~~g~----~eiv~~ 470 (760)
|.++ +..|..|.||||.|+..|+ .+++++
T Consensus 172 ------~~~~-----------------------------------------~~~~~~g~t~l~~a~~~~~~~~~~~i~~~ 204 (285)
T 1wdy_A 172 ------GADV-----------------------------------------NACDNMGRNALIHALLSSDDSDVEAITHL 204 (285)
T ss_dssp ------CCCT-----------------------------------------TCCCTTSCCHHHHHHHCSCTTTHHHHHHH
T ss_pred ------CCCC-----------------------------------------CccCCCCCCHHHHHHHccccchHHHHHHH
Confidence 0000 2456689999999999999 999999
Q ss_pred HHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHh-ccchhhhhhccccCCCCchhhHHhhcCCCCCC
Q 004346 471 ILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK-KKMIMENAFRKLDNQGNSALHYAAMFENHRPS 539 (760)
Q Consensus 471 LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~-~~a~~~~~in~~D~~G~T~LhlAa~~g~~~~~ 539 (760)
|++ .|++++.+|..|+||||+|++.|+.+++++|++ .|+ +++.+|.+|+||||+|++.|+.+++
T Consensus 205 Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~----~~~~~~~~g~t~l~~A~~~~~~~i~ 269 (285)
T 1wdy_A 205 LLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI----EINDTDSDGKTALLLAVELKLKKIA 269 (285)
T ss_dssp HHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC----CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC----CccccCCCCCcHHHHHHHcCcHHHH
Confidence 997 589999999999999999999999999999999 788 9999999999999999999997766
No 7
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=8.2e-41 Score=360.58 Aligned_cols=262 Identities=19% Similarity=0.253 Sum_probs=221.2
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCcccccccc-CCCChHHHHHHHcCCHHHHHHHH--------hcCCCcc
Q 004346 83 KITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQN-NRGNTALHLAAALGNVEMCRCMA--------SKDPKLV 153 (760)
Q Consensus 83 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll--------~~~~~~~ 153 (760)
..|..|+||||+|+..|+ +++++|+.. + ++.+| ..|+||||+||..|+.+++++|+ +.|++ +
T Consensus 89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~-----~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-v 159 (373)
T 2fo1_E 89 EPEPESPIKLHTEAAGSY-AITEPITRE--S-----VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-V 159 (373)
T ss_dssp -----CCCHHHHHHHSSS-CCCSCCSTT--T-----TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-T
T ss_pred CCCCCCccHHHHHhcCCc-hHHHHhccc--c-----ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-C
Confidence 457899999999999665 777777542 2 77788 79999999999999998877776 78888 8
Q ss_pred CCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhC---CCCccccccCC
Q 004346 154 GARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCY---PDLVNCVNENG 230 (760)
Q Consensus 154 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~---~~~~~~~d~~g 230 (760)
+.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+ .+ ++..|..|
T Consensus 160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~d~~g 235 (373)
T 2fo1_E 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD-IEELDRNG 235 (373)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT-TSCCCTTS
T ss_pred cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC---CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC-hhhcCCCC
Confidence 99999999999999999999999999999887 7789999999999999999999999999987 45 88999999
Q ss_pred CcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccC
Q 004346 231 LSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLL 310 (760)
Q Consensus 231 ~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 310 (760)
.||||+|+..+.. ...++++.|+..|++++...
T Consensus 236 ~t~L~~A~~~~~~----~~~~~v~~Ll~~g~~~~~~~------------------------------------------- 268 (373)
T 2fo1_E 236 MTALMIVAHNEGR----DQVASAKLLVEKGAKVDYDG------------------------------------------- 268 (373)
T ss_dssp CCHHHHHHHSCST----THHHHHHHHHHHTCCSSCCS-------------------------------------------
T ss_pred CCHHHHHHHhCCc----chHHHHHHHHHCCCCccccc-------------------------------------------
Confidence 9999999988631 12455555555554433200
Q ss_pred CCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHh
Q 004346 311 TKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQ 390 (760)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~ 390 (760)
T Consensus 269 -------------------------------------------------------------------------------- 268 (373)
T 2fo1_E 269 -------------------------------------------------------------------------------- 268 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCccchhcccccCCCcHHHHHHhcChHHHHHH
Q 004346 391 CASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPEKKNTQQSRRKETPLLIATKTGVLEIVEK 470 (760)
Q Consensus 391 ~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~ 470 (760)
....+..|..|.||||+||..|+.++|++
T Consensus 269 ---------------------------------------------------~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~ 297 (373)
T 2fo1_E 269 ---------------------------------------------------AARKDSEKYKGRTALHYAAQVSNMPIVKY 297 (373)
T ss_dssp ---------------------------------------------------GGGTSSSSCCCCCTHHHHHSSCCHHHHHH
T ss_pred ---------------------------------------------------ccccCcccccCCCHHHHHHHhCCHHHHHH
Confidence 00002456689999999999999999999
Q ss_pred HHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHhccchhhhhhccccCCCCchhhHHhhcCCCCCC
Q 004346 471 ILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENAFRKLDNQGNSALHYAAMFENHRPS 539 (760)
Q Consensus 471 LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~in~~D~~G~T~LhlAa~~g~~~~~ 539 (760)
|++..+++++.+|..|+||||+|+.+|+.++|++|+++|+ +++.+|..|+||||+|+..|+.+++
T Consensus 298 Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga----d~~~~d~~g~t~l~~A~~~g~~~iv 362 (373)
T 2fo1_E 298 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA----SVEAVDATDHTARQLAQANNHHNIV 362 (373)
T ss_dssp HHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred HHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccCCCCCCCCHHHHHHHcCCHHHH
Confidence 9998789999999999999999999999999999999999 9999999999999999999997776
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.5e-40 Score=352.99 Aligned_cols=313 Identities=19% Similarity=0.178 Sum_probs=250.4
Q ss_pred CcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCC
Q 004346 79 SQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNK 158 (760)
Q Consensus 79 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~ 158 (760)
......+..|.|+||.||+.|+.+.|+.|+.....+ ++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|.
T Consensus 15 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~ 89 (351)
T 3utm_A 15 AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN----CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDK 89 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTT----CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred eeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCC----cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCC
Confidence 344445678899999999999999999998863222 788999999999999999999999999999999 899999
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHh
Q 004346 159 DSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILA 238 (760)
Q Consensus 159 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~ 238 (760)
.|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++++++ ++..+..|.||+++|+
T Consensus 90 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~ 165 (351)
T 3utm_A 90 GGLVPLHNACSYGHYEVTELLLKHGAC---VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAP 165 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCS
T ss_pred CCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHHh
Confidence 999999999999999999999999887 778899999999999999999999999999999 9999999999999998
Q ss_pred cCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCC
Q 004346 239 GKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELD 318 (760)
Q Consensus 239 ~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 318 (760)
..+. .+.+........
T Consensus 166 ~~~~-------~~~~~~~~~~~~--------------------------------------------------------- 181 (351)
T 3utm_A 166 TPEL-------RERLTYEFKGHS--------------------------------------------------------- 181 (351)
T ss_dssp SHHH-------HHHHHHHHHHHH---------------------------------------------------------
T ss_pred hhhh-------HHHHHhhhcccH---------------------------------------------------------
Confidence 6542 122221110000
Q ss_pred cCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhcccccccc
Q 004346 319 EEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYD 398 (760)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d 398 (760)
.+... .....+.++.++......
T Consensus 182 --------------------------------------~~~~~----------------~~~~~~~~~~~l~~~~~~--- 204 (351)
T 3utm_A 182 --------------------------------------LLQAA----------------READLAKVKKTLALEIIN--- 204 (351)
T ss_dssp --------------------------------------HHHHH----------------HTTCHHHHHHHTTTCCTT---
T ss_pred --------------------------------------HHHHH----------------HhccHHHHHHHHHhhccc---
Confidence 00000 000123444444331100
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCccchhcccccCCCcHHHHHHhc---ChHHHHHHHHHhC
Q 004346 399 DNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPEKKNTQQSRRKETPLLIATKT---GVLEIVEKILDAF 475 (760)
Q Consensus 399 ~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~g~tpLh~Aa~~---g~~eiv~~LL~~~ 475 (760)
...+..|.||||+|+.. ++.+++++|++ .
T Consensus 205 -----------------------------------------------~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~ 236 (351)
T 3utm_A 205 -----------------------------------------------FKQPQSHETALHCAVASLHPKRKQVAELLLR-K 236 (351)
T ss_dssp -----------------------------------------------CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH-T
T ss_pred -----------------------------------------------ccCCCCCCCHHHHHHHHhCccHHHHHHHHHH-c
Confidence 13455799999999999 67899999997 5
Q ss_pred CccccccccCCCchHHHHHHcCcHHHHHHHHhccchhhhhhccccCCCCchhhHHhhcCCCCCCCCCchhHHHHHHHHHH
Q 004346 476 PVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENAFRKLDNQGNSALHYAAMFENHRPSSLIPGAALQMQWEIKW 555 (760)
Q Consensus 476 ~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~in~~D~~G~T~LhlAa~~g~~~~~~~l~~~~~~~~~~~~~ 555 (760)
+.+++.+|..|+||||+|++.|+.+++++|+++|+ ++|.+|..|+||||+|+..|+.+++++|
T Consensus 237 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~n~~d~~g~t~L~~A~~~~~~~~v~~L------------- 299 (351)
T 3utm_A 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA----KMNALDSLGQTALHRAALAGHLQTCRLL------------- 299 (351)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHTCHHHHHHH-------------
T ss_pred CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHcCcHHHHHHH-------------
Confidence 89999999999999999999999999999999999 9999999999999999999997766211
Q ss_pred HHHHHhcCCccchhccccCCCCccchhhhhhhhhhhh
Q 004346 556 YKYVKESMPQNFFVRYNNNGQTPKELFTETHKKLVKE 592 (760)
Q Consensus 556 ~~~~~~~~~~~~~~~~n~~g~tp~~i~~~~~~~l~~~ 592 (760)
.+. ......+|.+|+||++++.+.-.+++.+
T Consensus 300 ----l~~--gad~~~~~~~g~tal~~a~~~~~~~l~~ 330 (351)
T 3utm_A 300 ----LSY--GSDPSIISLQGFTAAQMGNEAVQQILSE 330 (351)
T ss_dssp ----HHT--TCCTTCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred ----HHc--CCCCCCcCCCCCChhhhhhHHHHHHHHh
Confidence 111 1224688999999999997665554443
No 9
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.9e-39 Score=329.66 Aligned_cols=246 Identities=19% Similarity=0.172 Sum_probs=214.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHH
Q 004346 87 SEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFL 166 (760)
Q Consensus 87 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~ 166 (760)
+|+||||+||..|+.+++++|++.|.+ ++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 75 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA-----VNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFN 75 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-----SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHH
Confidence 689999999999999999999999887 889999999999999999999999999999998 89999999999999
Q ss_pred HHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCc
Q 004346 167 AALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRS 246 (760)
Q Consensus 167 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s 246 (760)
|+..|+.+++++|++.+++ ++ .+.+|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~---~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~---- 146 (261)
T 2xai_A 76 ACVSGSWDCVNLLLQHGAS---VQ-PESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQ---- 146 (261)
T ss_dssp HHHHTCHHHHHHHHHTTCC---SS-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTC----
T ss_pred HHHcCCHHHHHHHHHCCCC---CC-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHhCC----
Confidence 9999999999999999887 33 355699999999999999999999999998 99999999999999999886
Q ss_pred cchhHHHHHHHhcccCchhhhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccc
Q 004346 247 SSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNV 326 (760)
Q Consensus 247 ~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (760)
.++++.|++.|+++
T Consensus 147 ---~~~v~~Ll~~g~~~--------------------------------------------------------------- 160 (261)
T 2xai_A 147 ---RACVKKLLESGADV--------------------------------------------------------------- 160 (261)
T ss_dssp ---HHHHHHHHHHTCCT---------------------------------------------------------------
T ss_pred ---HHHHHHHHHcCCCC---------------------------------------------------------------
Confidence 34444444333321
Q ss_pred hhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCC
Q 004346 327 ISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPEN 406 (760)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~ 406 (760)
T Consensus 161 -------------------------------------------------------------------------------- 160 (261)
T 2xai_A 161 -------------------------------------------------------------------------------- 160 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccccccccccCCccchhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCC
Q 004346 407 SRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPEKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANG 486 (760)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G 486 (760)
..|..|.||||+|+..|+.+++++|++. |++++.+|.+|
T Consensus 161 ----------------------------------------~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g 199 (261)
T 2xai_A 161 ----------------------------------------NQGKGQDSPLHAVARTASEELACLLMDF-GADTQAKNAEG 199 (261)
T ss_dssp ----------------------------------------TCCBTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTS
T ss_pred ----------------------------------------CCCCCCCChHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCC
Confidence 1244789999999999999999999985 89999999999
Q ss_pred CchHHHHHHcCcHHHHHHHHhccchh----hhhhccccCCCCchhhHHhhcCCC
Q 004346 487 KNVVLLAVEHRQTHIYELLLKKKMIM----ENAFRKLDNQGNSALHYAAMFENH 536 (760)
Q Consensus 487 ~T~Lh~A~~~~~~~iv~~Ll~~~a~~----~~~in~~D~~G~T~LhlAa~~g~~ 536 (760)
+||||+|+.++ +++++|++++... ..+++.+|..|+||||+|++....
T Consensus 200 ~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p 251 (261)
T 2xai_A 200 KRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLP 251 (261)
T ss_dssp CCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSC
T ss_pred CChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCc
Confidence 99999999655 5899999987522 136778999999999999987653
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.3e-39 Score=332.43 Aligned_cols=184 Identities=17% Similarity=0.133 Sum_probs=138.9
Q ss_pred hhhccchHHHHHHHHcCCHHHHHHHHHcCCC---------CcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccc
Q 004346 48 KSMQMEIDNLFESAMRGHWDHIVQAYESNPM---------SQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNI 118 (760)
Q Consensus 48 ~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~---------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~ 118 (760)
+....+.|+||.|+..|+.+.+..++...+. ...+..|..|+||||+||..|+.+++++|++.|.+
T Consensus 10 ~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~----- 84 (285)
T 3d9h_A 10 HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA----- 84 (285)
T ss_dssp --------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred ccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-----
Confidence 3445677999999999999888887665322 12455688999999999999999999999999887
Q ss_pred cccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCCh
Q 004346 119 LKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDT 198 (760)
Q Consensus 119 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t 198 (760)
++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.+.+ ++ .+..|.|
T Consensus 85 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~-~~~~g~t 159 (285)
T 3d9h_A 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS---VQ-PESDLAS 159 (285)
T ss_dssp SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SS-CSCTTSC
T ss_pred CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC---CC-CCCCCCC
Confidence 889999999999999999999999999999998 899999999999999999999999999999877 43 3445999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCC
Q 004346 199 ILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPN 242 (760)
Q Consensus 199 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~ 242 (760)
|||+|+..|+.+++++|++.+++ ++.+|.+|.||||+|+..++
T Consensus 160 ~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~ 202 (285)
T 3d9h_A 160 PIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQ 202 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCc
Confidence 99999999999999999999998 89999999999999998886
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=329.90 Aligned_cols=248 Identities=16% Similarity=0.127 Sum_probs=192.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhhCcC------CccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCC
Q 004346 85 TKSEDTALHLAAASGHSDVVCRLVETMGEN------ESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNK 158 (760)
Q Consensus 85 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~------~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~ 158 (760)
...|.|+||+|+..|+.+.+..++..+... ....++.+|..|+||||+||..|+.+++++|++.|++ ++.+|.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEECT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCC
Confidence 468999999999999987777776664321 1222678899999999999999999999999999998 899999
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHh
Q 004346 159 DSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILA 238 (760)
Q Consensus 159 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~ 238 (760)
+|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+++ ++. +.+|.||||+|+
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~ 165 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAA 165 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSC-SCTTSCHHHHHH
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC-CCC-CCCCCCHHHHHH
Confidence 999999999999999999999999877 778999999999999999999999999999988 654 445999999999
Q ss_pred cCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCC
Q 004346 239 GKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELD 318 (760)
Q Consensus 239 ~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 318 (760)
..++ .++++.|+..|+++
T Consensus 166 ~~g~-------~~~v~~Ll~~g~~~------------------------------------------------------- 183 (285)
T 3d9h_A 166 RRGH-------VECVNSLIAYGGNI------------------------------------------------------- 183 (285)
T ss_dssp HHTC-------HHHHHHHHHTTCCT-------------------------------------------------------
T ss_pred HcCC-------HHHHHHHHHCCCCC-------------------------------------------------------
Confidence 9886 34444444333221
Q ss_pred cCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhcccccccc
Q 004346 319 EEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYD 398 (760)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d 398 (760)
T Consensus 184 -------------------------------------------------------------------------------- 183 (285)
T 3d9h_A 184 -------------------------------------------------------------------------------- 183 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCccchhcccccCCCcHHHHHHhcChHHHHHHHHHhCCcc
Q 004346 399 DNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPEKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVA 478 (760)
Q Consensus 399 ~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~ 478 (760)
+.+|..|.||||+|+..|+.++|++|++. +++
T Consensus 184 -----------------------------------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~ 215 (285)
T 3d9h_A 184 -----------------------------------------------DHKISHLGTPLYLACENQQRACVKKLLES-GAD 215 (285)
T ss_dssp -----------------------------------------------TCCBTTTBCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred -----------------------------------------------CCcCCCCCCHHHHHHHcCcHHHHHHHHHC-CCC
Confidence 24566899999999999999999999975 889
Q ss_pred ccccccCCCchHHHHHHcCcHHHHHHHHhccchhhhhhccccCCCCchhhHHhhc
Q 004346 479 IQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENAFRKLDNQGNSALHYAAMF 533 (760)
Q Consensus 479 i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~in~~D~~G~T~LhlAa~~ 533 (760)
++. |..|+||||+|+..++.+++++|+++|+ +++.+|.+|+||||+|+..
T Consensus 216 ~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 216 VNQ-GKGQDSPLHAVVRTASEELACLLMDFGA----DTQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp TTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCGGGGSCTT
T ss_pred CCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHhcCc
Confidence 985 8999999999999999999999999999 9999999999999999943
No 12
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=5.7e-39 Score=345.61 Aligned_cols=266 Identities=21% Similarity=0.200 Sum_probs=220.2
Q ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCC
Q 004346 77 PMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGAR 156 (760)
Q Consensus 77 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~ 156 (760)
+..+.+..|..|+||||+||..|+.++|++|++.|++ ++.+|..|+||||+||..|+.++|++|++.+++ + .
T Consensus 9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~--~ 80 (364)
T 3ljn_A 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-----PTIQNRFGCTALHLACKFGCVDTAKYLASVGEV-H--S 80 (364)
T ss_dssp -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC-C--C
T ss_pred cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-c--c
Confidence 3556677788999999999999999999999999887 889999999999999999999999999999985 3 3
Q ss_pred CCCCCcHHHHHHHcCChHHHHHHHhc----CCCCCCccc-----------------CCCCCChHHHHHHHcC--CHHHHH
Q 004346 157 NKDSETPLFLAALNGKKAAFLCLHFL----SHDKDSSLG-----------------RKSNGDTILHAAISGD--YFSLAF 213 (760)
Q Consensus 157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~----~~~~~~~~~-----------------~~~~g~t~Lh~A~~~~--~~~iv~ 213 (760)
+.+|.||||+|+..|+.+++++|++. +.+ ++. +|..|.||||+|+..| +.++++
T Consensus 81 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~ 157 (364)
T 3ljn_A 81 LWHGQKPIHLAVMANKTDLVVALVEGAKERGQM---PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIK 157 (364)
T ss_dssp CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC---HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC---HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHH
Confidence 35799999999999999999999998 544 333 7889999999999999 999999
Q ss_pred HHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCCCCCCchhHhHH
Q 004346 214 HIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCI 293 (760)
Q Consensus 214 ~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (760)
+|++.+++ ++.+|..|.||||+|+..|+ .++++.|+..|++...
T Consensus 158 ~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~~---------------------------- 201 (364)
T 3ljn_A 158 ILVQLGAS-PTAKDKADETPLMRAMEFRN-------REALDLMMDTVPSKSS---------------------------- 201 (364)
T ss_dssp HHHHHTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHCSCSSS----------------------------
T ss_pred HHHHcCCC-CcccCCCCCCHHHHHHHcCC-------HHHHHHHHhccccccc----------------------------
Confidence 99999998 99999999999999999986 3555555544432110
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHH
Q 004346 294 NFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKE 373 (760)
Q Consensus 294 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (760)
T Consensus 202 -------------------------------------------------------------------------------- 201 (364)
T 3ljn_A 202 -------------------------------------------------------------------------------- 201 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCccchhcccccCCC
Q 004346 374 KKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPEKKNTQQSRRKE 453 (760)
Q Consensus 374 ~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~g~ 453 (760)
...+.+|..|+
T Consensus 202 ---------------------------------------------------------------------~~~~~~~~~g~ 212 (364)
T 3ljn_A 202 ---------------------------------------------------------------------LRLDYANKQGN 212 (364)
T ss_dssp ---------------------------------------------------------------------CCTTCCCTTCC
T ss_pred ---------------------------------------------------------------------ccccccCCCCC
Confidence 00135677899
Q ss_pred cHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHhccchhhh--------hhccccCCCCc
Q 004346 454 TPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMEN--------AFRKLDNQGNS 525 (760)
Q Consensus 454 tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~--------~in~~D~~G~T 525 (760)
||||+||..|+.++|++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|+.... .....|..|+|
T Consensus 213 t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (364)
T 3ljn_A 213 SHLHWAILINWEDVAMRFVE-MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWL 291 (364)
T ss_dssp CTTHHHHTTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCC
T ss_pred cHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccc
Confidence 99999999999999999997 5899999999999999999999999999999999982110 11126788999
Q ss_pred hhhHHhhcCCCCCC
Q 004346 526 ALHYAAMFENHRPS 539 (760)
Q Consensus 526 ~LhlAa~~g~~~~~ 539 (760)
||+.|+..|+.+.+
T Consensus 292 ~l~~aa~~~~~~~v 305 (364)
T 3ljn_A 292 DFVPAAADPSKQEV 305 (364)
T ss_dssp TTSCSSCCHHHHHH
T ss_pred cchhhhhccCHHHH
Confidence 99999988864443
No 13
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3e-38 Score=327.02 Aligned_cols=257 Identities=19% Similarity=0.138 Sum_probs=186.9
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCC
Q 004346 81 EAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDS 160 (760)
Q Consensus 81 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g 160 (760)
.+.+|.+|+||||+||..|+.++|++|++.+++. ..++.+|..|+||||+||..|+.+++++|+++|++ ++.+|..|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g 78 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH--EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGG 78 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS--GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTS
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc--ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCC
Confidence 3567999999999999999999999999998762 23788999999999999999999999999999999 89999999
Q ss_pred CcHHHHHHHcCChHHHHHHHhcCCCCC----------CcccCCCCCChHHHHHHHcCCHHHHHH-HHHhCCCCccccccC
Q 004346 161 ETPLFLAALNGKKAAFLCLHFLSHDKD----------SSLGRKSNGDTILHAAISGDYFSLAFH-IIRCYPDLVNCVNEN 229 (760)
Q Consensus 161 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~----------~~~~~~~~g~t~Lh~A~~~~~~~iv~~-Ll~~~~~~~~~~d~~ 229 (760)
.||||+|+..|+.+++++|++.++... ........+.++++.++..+....... +...+.+ ++.+|..
T Consensus 79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 157 (282)
T 1oy3_D 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYD 157 (282)
T ss_dssp CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG-TTCCCTT
T ss_pred CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc-CCCcCCC
Confidence 999999999999999999999876521 111233456778887776665443333 3333444 8889999
Q ss_pred CCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhcc
Q 004346 230 GLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGL 309 (760)
Q Consensus 230 g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 309 (760)
|.||||+|+..|+ .++++.|++.|++++
T Consensus 158 g~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~--------------------------------------------- 185 (282)
T 1oy3_D 158 GHTPLHVAVIHKD-------AEMVRLLRDAGADLN--------------------------------------------- 185 (282)
T ss_dssp SCCHHHHHHHTTC-------HHHHHHHHHHTCCTT---------------------------------------------
T ss_pred CcCHHHHHHHcCC-------HHHHHHHHHcCCCCC---------------------------------------------
Confidence 9999999999986 355555554444322
Q ss_pred CCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHH
Q 004346 310 LTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELV 389 (760)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll 389 (760)
T Consensus 186 -------------------------------------------------------------------------------- 185 (282)
T 1oy3_D 186 -------------------------------------------------------------------------------- 185 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCccchhcccc-cCCCcHHHHHHhcChHHHH
Q 004346 390 QCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPEKKNTQQS-RRKETPLLIATKTGVLEIV 468 (760)
Q Consensus 390 ~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~g~tpLh~Aa~~g~~eiv 468 (760)
..+ ..|+||||+|+..|+.++|
T Consensus 186 ---------------------------------------------------------~~~~~~g~tpL~~A~~~~~~~~v 208 (282)
T 1oy3_D 186 ---------------------------------------------------------KPEPTCGRTPLHLAVEAQAASVL 208 (282)
T ss_dssp ---------------------------------------------------------CCCTTTCCCHHHHHHHTTCHHHH
T ss_pred ---------------------------------------------------------CCCCCCCcCHHHHHHHcCCHHHH
Confidence 222 2499999999999999999
Q ss_pred HHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHhccchhhhhhccccCCCCchhhHHhhcCC
Q 004346 469 EKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENAFRKLDNQGNSALHYAAMFEN 535 (760)
Q Consensus 469 ~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~in~~D~~G~T~LhlAa~~g~ 535 (760)
++|++. |++++.+|..|+||||+|+++|+.+++++|+++|+ +++.+|.+|.|||++|....+
T Consensus 209 ~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 209 ELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHGA----PEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHHHHT-TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC----CCCCCC---------------
T ss_pred HHHHHc-CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCC----CcCcCCCcccccccccCCccc
Confidence 999985 89999999999999999999999999999999999 999999999999999998765
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=8.6e-38 Score=318.18 Aligned_cols=155 Identities=23% Similarity=0.219 Sum_probs=103.9
Q ss_pred cccccCCCCCcHHHHHHHcC-------------CHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHH
Q 004346 80 QEAKITKSEDTALHLAAASG-------------HSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMA 146 (760)
Q Consensus 80 ~~~~~d~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll 146 (760)
+++.+|.+|+||||+|+..| +.+++++|++.|++. .+..|..|+||||+|+..|+.+++++|+
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll 77 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL----HNQTDRTGETALHLAARYSRSDAAKRLL 77 (253)
T ss_dssp ------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc----ccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 45677889999999999977 889999999988762 3456889999999999999999999999
Q ss_pred hcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCcccc
Q 004346 147 SKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCV 226 (760)
Q Consensus 147 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~ 226 (760)
++|++ ++.+|..|.||||+|+..|+.+++++|++.+... ++.++..|.||||+|+..|+.+++++|++.+++ ++.+
T Consensus 78 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~ 153 (253)
T 1yyh_A 78 EASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAV 153 (253)
T ss_dssp HTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC--TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCB
T ss_pred HcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCc
Confidence 99988 8889999999999999999999999999887632 667888899999999999999999999998888 8888
Q ss_pred ccCCCcHHHHHhcCCC
Q 004346 227 NENGLSPLHILAGKPN 242 (760)
Q Consensus 227 d~~g~tpL~~A~~~~~ 242 (760)
|..|.||||+|+..++
T Consensus 154 d~~g~t~L~~A~~~~~ 169 (253)
T 1yyh_A 154 DDLGKSALHWAAAVNN 169 (253)
T ss_dssp CTTSCBHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHcCC
Confidence 8888999998888775
No 15
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-38 Score=341.47 Aligned_cols=262 Identities=18% Similarity=0.179 Sum_probs=219.4
Q ss_pred hhhccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccC-CCCCcHHHHHHHcCCHHHHHHHH--------HhhCcCCccc
Q 004346 48 KSMQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKIT-KSEDTALHLAAASGHSDVVCRLV--------ETMGENESNI 118 (760)
Q Consensus 48 ~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~ 118 (760)
..+..+.|+||.|+..|. +.++.++ ...++..| ..|+||||+||..|+.+++++|+ +.|++
T Consensus 89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~----~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~----- 158 (373)
T 2fo1_E 89 EPEPESPIKLHTEAAGSY-AITEPIT----RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD----- 158 (373)
T ss_dssp -----CCCHHHHHHHSSS-CCCSCCS----TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-----
T ss_pred CCCCCCccHHHHHhcCCc-hHHHHhc----cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-----
Confidence 445667899999999554 4444332 23566667 79999999999999998888776 67777
Q ss_pred cccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCCh
Q 004346 119 LKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDT 198 (760)
Q Consensus 119 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t 198 (760)
++.+|..|+||||+|+..|+.++|++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+....+++..|..|.|
T Consensus 159 vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t 237 (373)
T 2fo1_E 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 237 (373)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCC
Confidence 899999999999999999999999999999999 8999999999999999999999999999887321237788999999
Q ss_pred HHHHHHHcC---CHHHHHHHHHhCCCCccc--------cccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhh
Q 004346 199 ILHAAISGD---YFSLAFHIIRCYPDLVNC--------VNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELR 267 (760)
Q Consensus 199 ~Lh~A~~~~---~~~iv~~Ll~~~~~~~~~--------~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~ 267 (760)
|||+|+..+ +.+++++|++.+++ ++. .|..|.||||+|+..|+ .+
T Consensus 238 ~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~-------~~---------------- 293 (373)
T 2fo1_E 238 ALMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSN-------MP---------------- 293 (373)
T ss_dssp HHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCC-------HH----------------
T ss_pred HHHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCC-------HH----------------
Confidence 999999998 89999999999988 654 67799999999999986 23
Q ss_pred hhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhH
Q 004346 268 EEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFV 347 (760)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (760)
T Consensus 294 -------------------------------------------------------------------------------- 293 (373)
T 2fo1_E 294 -------------------------------------------------------------------------------- 293 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 004346 348 LFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPE 427 (760)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~ 427 (760)
++++|++++. .+
T Consensus 294 ------------------------------------~v~~Ll~~~~--------~~------------------------ 305 (373)
T 2fo1_E 294 ------------------------------------IVKYLVGEKG--------SN------------------------ 305 (373)
T ss_dssp ------------------------------------HHHHHHHHSC--------CC------------------------
T ss_pred ------------------------------------HHHHHHHhcC--------CC------------------------
Confidence 4555554420 00
Q ss_pred CccccccccccCCccchhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHh
Q 004346 428 NTETSQKNIVLSTPEKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLK 507 (760)
Q Consensus 428 ~~l~~~~~~~~~~~~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 507 (760)
.+.+|..|.||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+.+|+.+++++|++
T Consensus 306 -----------------~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~ 367 (373)
T 2fo1_E 306 -----------------KDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367 (373)
T ss_dssp -----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred -----------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 02567789999999999999999999998 589999999999999999999999999999999
Q ss_pred ccc
Q 004346 508 KKM 510 (760)
Q Consensus 508 ~~a 510 (760)
+++
T Consensus 368 ~~a 370 (373)
T 2fo1_E 368 CRP 370 (373)
T ss_dssp TC-
T ss_pred cCc
Confidence 987
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.3e-38 Score=319.19 Aligned_cols=224 Identities=19% Similarity=0.166 Sum_probs=169.0
Q ss_pred cccccCCCChHHHHHHHcC-------------CHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCC
Q 004346 119 LKIQNNRGNTALHLAAALG-------------NVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHD 185 (760)
Q Consensus 119 ~~~~d~~g~TpLh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 185 (760)
++.+|.+|+||||+|+..| +.++++.|++.|++..+..|..|+||||+|+..|+.+++++|++.+++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7889999999999999977 899999999999996566799999999999999999999999999887
Q ss_pred CCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchh
Q 004346 186 KDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDE 265 (760)
Q Consensus 186 ~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~ 265 (760)
++.+|..|+||||+|+..|+.+++++|++.++..++.+|..|.||||+|+..++. ++++.|+..|+++
T Consensus 83 ---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~-------~~v~~Ll~~g~~~-- 150 (253)
T 1yyh_A 83 ---ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE-------GMLEDLINSHADV-- 150 (253)
T ss_dssp ---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS-------SHHHHHHHTTCCT--
T ss_pred ---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH-------HHHHHHHHcCCCC--
Confidence 7789999999999999999999999999999855999999999999999998862 4444444333221
Q ss_pred hhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCch
Q 004346 266 LREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTT 345 (760)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (760)
T Consensus 151 -------------------------------------------------------------------------------- 150 (253)
T 1yyh_A 151 -------------------------------------------------------------------------------- 150 (253)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 004346 346 FVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPV 425 (760)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~ 425 (760)
T Consensus 151 -------------------------------------------------------------------------------- 150 (253)
T 1yyh_A 151 -------------------------------------------------------------------------------- 150 (253)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccCCccchhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHH
Q 004346 426 PENTETSQKNIVLSTPEKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELL 505 (760)
Q Consensus 426 ~~~~l~~~~~~~~~~~~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~L 505 (760)
+.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+++|+.+++++|
T Consensus 151 --------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~L 209 (253)
T 1yyh_A 151 --------------------NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVL 209 (253)
T ss_dssp --------------------TCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred --------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 2456689999999999999999999997 4899999999999999999999999999999
Q ss_pred HhccchhhhhhccccCCCCchhhHHhhcCCCCCC
Q 004346 506 LKKKMIMENAFRKLDNQGNSALHYAAMFENHRPS 539 (760)
Q Consensus 506 l~~~a~~~~~in~~D~~G~T~LhlAa~~g~~~~~ 539 (760)
+++|+ +++.+|..|+||||+|++.|+.+++
T Consensus 210 l~~ga----~~~~~d~~g~tpl~~A~~~g~~~i~ 239 (253)
T 1yyh_A 210 LDHFA----NRDITDHMDRLPRDIAQERMHHDIV 239 (253)
T ss_dssp HHTTC----CTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred HHcCC----CccccccCCCCHHHHHHHcCCHHHH
Confidence 99999 9999999999999999999998776
No 17
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.3e-37 Score=310.50 Aligned_cols=153 Identities=25% Similarity=0.268 Sum_probs=121.8
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHH----hhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCC
Q 004346 82 AKITKSEDTALHLAAASGHSDVVCRLVE----TMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARN 157 (760)
Q Consensus 82 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~ 157 (760)
+.+|.+|+||||+||..|+.+++++|++ .+.+ ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~ 76 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-----LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALD 76 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccC
Confidence 4568899999999999999999999987 3444 788899999999999999999999999999988 88889
Q ss_pred CCCCcHHHHHHHcCChHHHHHHHhcCCCC-CCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccc-cCCCcHHH
Q 004346 158 KDSETPLFLAALNGKKAAFLCLHFLSHDK-DSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVN-ENGLSPLH 235 (760)
Q Consensus 158 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d-~~g~tpL~ 235 (760)
..|.||||+|+..|+.+++++|++.+... .+++..+..|.||||+|+..|+.+++++|++.+++ ++..+ ..|.||||
T Consensus 77 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~ 155 (241)
T 1k1a_A 77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLI 155 (241)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHH
Confidence 99999999999999999999999887631 13667788899999999999999999999988877 55444 44555555
Q ss_pred HHhcCC
Q 004346 236 ILAGKP 241 (760)
Q Consensus 236 ~A~~~~ 241 (760)
+|+..+
T Consensus 156 ~A~~~~ 161 (241)
T 1k1a_A 156 HAVENN 161 (241)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 555444
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.9e-37 Score=332.35 Aligned_cols=197 Identities=17% Similarity=0.108 Sum_probs=172.8
Q ss_pred hhhhhhccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccC
Q 004346 45 EEEKSMQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNN 124 (760)
Q Consensus 45 ~~~~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~ 124 (760)
.....+..+.||||.||..|+.+.++.+++. +.+++..|..|+||||+||..|+.++|++|++.+++ ..+.
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------~~~~ 82 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV-------HSLW 82 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC-------CCCB
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-------cccc
Confidence 3444566788999999999999999999988 788899999999999999999999999999999875 2345
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhc----CCCccCC-----------------CCCCCCcHHHHHHHcC--ChHHHHHHHh
Q 004346 125 RGNTALHLAAALGNVEMCRCMASK----DPKLVGA-----------------RNKDSETPLFLAALNG--KKAAFLCLHF 181 (760)
Q Consensus 125 ~g~TpLh~Aa~~g~~~~v~~Ll~~----~~~~~~~-----------------~~~~g~tpL~~A~~~g--~~~~v~~Ll~ 181 (760)
.|.||||+|+..|+.+++++|++. +++ ++. +|..|.||||+|+..| +.+++++|++
T Consensus 83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~ 161 (364)
T 3ljn_A 83 HGQKPIHLAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161 (364)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence 899999999999999999999998 766 555 8889999999999999 9999999999
Q ss_pred cCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCC----ccccccCCCcHHHHHhcCCCCCCccchhHHHHHHH
Q 004346 182 LSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDL----VNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLML 257 (760)
Q Consensus 182 ~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~----~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll 257 (760)
.+++ ++.+|..|+||||+|+..|+.+++++|++.+++. ++..|..|.||||+|+..|+ .++++.|+
T Consensus 162 ~ga~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll 231 (364)
T 3ljn_A 162 LGAS---PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW-------EDVAMRFV 231 (364)
T ss_dssp HTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC-------HHHHHHHH
T ss_pred cCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC-------HHHHHHHH
Confidence 9887 7889999999999999999999999999998773 78899999999999999986 35555555
Q ss_pred hccc
Q 004346 258 YDCV 261 (760)
Q Consensus 258 ~~~~ 261 (760)
++|+
T Consensus 232 ~~ga 235 (364)
T 3ljn_A 232 EMGI 235 (364)
T ss_dssp TTTC
T ss_pred HcCC
Confidence 4444
No 19
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=7.1e-37 Score=312.88 Aligned_cols=176 Identities=20% Similarity=0.166 Sum_probs=164.9
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHH
Q 004346 53 EIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHL 132 (760)
Q Consensus 53 ~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~ 132 (760)
+.||||.||..|+.+.++.+++. +.+++..|..|+||||+||..|+.+++++|++.|++ ++.+|..|+||||+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~ 75 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-----VNGVTADWHTPLFN 75 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHH
Confidence 67999999999999999999998 788899999999999999999999999999999988 88999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHH
Q 004346 133 AAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212 (760)
Q Consensus 133 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv 212 (760)
|+..|+.+++++|++.|++ ++. +.+|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v 150 (261)
T 2xai_A 76 ACVSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVECVNSLIAYGGN---IDHKISHLGTPLYLACENQQRACV 150 (261)
T ss_dssp HHHHTCHHHHHHHHHTTCC-SSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCBTTTBCHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCcCCCCCCCHHHHHHHhCCHHHH
Confidence 9999999999999999998 664 55699999999999999999999999887 778999999999999999999999
Q ss_pred HHHHHhCCCCccccccCCCcHHHHHhcCCC
Q 004346 213 FHIIRCYPDLVNCVNENGLSPLHILAGKPN 242 (760)
Q Consensus 213 ~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~ 242 (760)
++|++.+++ ++. |..|.||||+|+..++
T Consensus 151 ~~Ll~~g~~-~~~-~~~g~t~Lh~A~~~~~ 178 (261)
T 2xai_A 151 KKLLESGAD-VNQ-GKGQDSPLHAVARTAS 178 (261)
T ss_dssp HHHHHHTCC-TTC-CBTTBCHHHHHHHHTC
T ss_pred HHHHHcCCC-CCC-CCCCCChHHHHHHcCC
Confidence 999999998 774 8999999999999886
No 20
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.3e-36 Score=323.41 Aligned_cols=200 Identities=18% Similarity=0.140 Sum_probs=172.7
Q ss_pred hhhhcccCCCCCchhhhhhh-ccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 004346 31 GVEEMDSNSLSTEDEEEKSM-QMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVE 109 (760)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~ 109 (760)
+..++++.+++.+.+.+... +.+.||||.||..|+.+.++.||+. +++++..+..+.+++|.++..++...+..+++
T Consensus 36 g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (337)
T 4g8k_A 36 EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFILAAIAGSVKLLKLFLS 113 (337)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc--CCchhhhccCCCchhHHHHhcccchhhHHhhh
Confidence 33444444445555555443 4478999999999999999999988 88889999999999999999999999999999
Q ss_pred hhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCC----------CCCCCCcHHHHHHHcCChHHHHHH
Q 004346 110 TMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGA----------RNKDSETPLFLAALNGKKAAFLCL 179 (760)
Q Consensus 110 ~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~----------~~~~g~tpL~~A~~~g~~~~v~~L 179 (760)
.+.+ ++.+|..|.||||+|+..|+.+++++|+++|++ ++. .+..|.||||+|+..|+.+++++|
T Consensus 114 ~~~~-----~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~-~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~L 187 (337)
T 4g8k_A 114 KGAD-----VNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 187 (337)
T ss_dssp TTCC-----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHH
T ss_pred ccch-----hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCC-cchhhccccccccccCCCCcHHHHHHHCCCHHHHHHH
Confidence 9887 889999999999999999999999999999987 443 455789999999999999999999
Q ss_pred Hh-cCCCCCCcccCCCCCChHHHHHHHcCC----HHHHHHHHHhCCCCccccccCCCcHHHHHhcCCC
Q 004346 180 HF-LSHDKDSSLGRKSNGDTILHAAISGDY----FSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPN 242 (760)
Q Consensus 180 l~-~~~~~~~~~~~~~~g~t~Lh~A~~~~~----~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~ 242 (760)
++ .+++ ++.+|..|.|+||.++..+. ..++++|++++++ ++.+|.+|.||||+|+..++
T Consensus 188 L~~~gad---~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 188 LDEMGAD---VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHSCCC---TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTC
T ss_pred HhccCCC---cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhh
Confidence 96 4665 78899999999998876543 4689999999999 99999999999999999886
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=9.3e-37 Score=308.01 Aligned_cols=224 Identities=17% Similarity=0.192 Sum_probs=195.4
Q ss_pred cccccCCCChHHHHHHHcCCHHHHHHHHh----cCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCC
Q 004346 119 LKIQNNRGNTALHLAAALGNVEMCRCMAS----KDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKS 194 (760)
Q Consensus 119 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 194 (760)
++.+|.+|+||||+||..|+.++++.|++ .+.+ ++.+|..|.||||+|+..|+.+++++|++.+.+ ++.++.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~ 77 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS---PMALDR 77 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCT
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCC
Confidence 56789999999999999999999999997 5666 899999999999999999999999999999887 777899
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCC---CccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhc
Q 004346 195 NGDTILHAAISGDYFSLAFHIIRCYPD---LVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKY 271 (760)
Q Consensus 195 ~g~t~Lh~A~~~~~~~iv~~Ll~~~~~---~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~ 271 (760)
.|.||||+|+..|+.+++++|++.++. .++..|..|.||||+|+..++ .++++.|+..|++++
T Consensus 78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~------- 143 (241)
T 1k1a_A 78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-------QETVQLLLERGADID------- 143 (241)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-------HHHHHHHHHTTCCTT-------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-------HHHHHHHHHcCCCcc-------
Confidence 999999999999999999999999872 388899999999999998876 344444444333221
Q ss_pred ccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHH
Q 004346 272 DYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSK 351 (760)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (760)
T Consensus 144 -------------------------------------------------------------------------------- 143 (241)
T 1k1a_A 144 -------------------------------------------------------------------------------- 143 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccc
Q 004346 352 LMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTET 431 (760)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (760)
T Consensus 144 -------------------------------------------------------------------------------- 143 (241)
T 1k1a_A 144 -------------------------------------------------------------------------------- 143 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCccchhcccc-cCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHhccc
Q 004346 432 SQKNIVLSTPEKKNTQQS-RRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKM 510 (760)
Q Consensus 432 ~~~~~~~~~~~~~~~~~d-~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a 510 (760)
..+ ..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 144 ---------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 207 (241)
T 1k1a_A 144 ---------------AVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA 207 (241)
T ss_dssp ---------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ---------------cccccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence 223 4699999999999999999999974 89999999999999999999999999999999999
Q ss_pred hhhhhhccccCCCCchhhHHhhcCCCCCCC
Q 004346 511 IMENAFRKLDNQGNSALHYAAMFENHRPSS 540 (760)
Q Consensus 511 ~~~~~in~~D~~G~T~LhlAa~~g~~~~~~ 540 (760)
+++.+|..|+||||+|+..|+.++++
T Consensus 208 ----~~~~~~~~g~tpl~~A~~~~~~~i~~ 233 (241)
T 1k1a_A 208 ----DSSLKNCHNDTPLMVARSRRVIDILR 233 (241)
T ss_dssp ----CTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred ----CCCCcCCCCCCHHHHHHhcCcHHHHh
Confidence 99999999999999999999877764
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.5e-36 Score=303.09 Aligned_cols=84 Identities=15% Similarity=0.254 Sum_probs=73.1
Q ss_pred cccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHhccchhhhhhccccCCCCchh
Q 004346 448 QSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENAFRKLDNQGNSAL 527 (760)
Q Consensus 448 ~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~in~~D~~G~T~L 527 (760)
+|..|.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|++.++.+++++|+++|+ +++.+|.+|+|||
T Consensus 140 ~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~t~l 214 (237)
T 3b7b_A 140 RDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS----DVTLKNKEGETPL 214 (237)
T ss_dssp CCTTSCCHHHHHHHHCCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC----CTTCCCTTSCCHH
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCC----CCCccCCCCCCHH
Confidence 34467888888888899999999886 478899999999999999999999999999999998 8899999999999
Q ss_pred hHHhhcCCC
Q 004346 528 HYAAMFENH 536 (760)
Q Consensus 528 hlAa~~g~~ 536 (760)
|+|+..|+.
T Consensus 215 ~~A~~~~~~ 223 (237)
T 3b7b_A 215 QCASLNSQV 223 (237)
T ss_dssp HHSCTTCHH
T ss_pred HHHHHHHHH
Confidence 999988863
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4.8e-36 Score=302.05 Aligned_cols=154 Identities=20% Similarity=0.144 Sum_probs=144.6
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCC
Q 004346 80 QEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKD 159 (760)
Q Consensus 80 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~ 159 (760)
+.+..|.+|.||||+||..|+.+++++|++.|.+ ++..|..|+||||+|+..|+.+++++|++.|++ ++.++..
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 76 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-----IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAE 76 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTT
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-----cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCC
Confidence 4567789999999999999999999999999987 889999999999999999999999999999998 8999999
Q ss_pred CCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhc
Q 004346 160 SETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAG 239 (760)
Q Consensus 160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~ 239 (760)
|.||||+|+..|+.+++++|++.+... ++..+..|.||||+|+..++.+++++|++.+++ ++.+|..|.||||+|+.
T Consensus 77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 153 (237)
T 3b7b_A 77 GSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAF 153 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTTTCCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCC--cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHH
Confidence 999999999999999999999987322 677899999999999999999999999999998 99999999999999999
Q ss_pred CCC
Q 004346 240 KPN 242 (760)
Q Consensus 240 ~~~ 242 (760)
.++
T Consensus 154 ~~~ 156 (237)
T 3b7b_A 154 SGC 156 (237)
T ss_dssp HCC
T ss_pred CCC
Confidence 886
No 24
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.3e-37 Score=321.38 Aligned_cols=264 Identities=17% Similarity=0.191 Sum_probs=188.7
Q ss_pred HHHHcCCHHHHHHHHHcCCCCcc-------cccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHH
Q 004346 59 ESAMRGHWDHIVQAYESNPMSQE-------AKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALH 131 (760)
Q Consensus 59 ~Aa~~g~~~~v~~lL~~~~~~~~-------~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh 131 (760)
.++..+..+.+..++........ ...+.+|.||||.||..|+.++|++|++.|++ ++.+|..|.||||
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~ 78 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-----INYANVDGLTALH 78 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-----TTCBCTTCCBHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-----CcccCCCCCCHHH
Confidence 35666777777777766432111 11234566777777777777777777777766 6777777777777
Q ss_pred HHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHH
Q 004346 132 LAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSL 211 (760)
Q Consensus 132 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~i 211 (760)
+||..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..++.++
T Consensus 79 ~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~ 154 (299)
T 1s70_B 79 QACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAH---VGAVNSEGDTPLDIAEEEAMEEL 154 (299)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHhcchHHH
Confidence 77777777777777777777 677777777777777777777777777777665 55667777777777777777777
Q ss_pred HHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCCCCCCchhHh
Q 004346 212 AFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGTAKFPENYRT 291 (760)
Q Consensus 212 v~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (760)
++.++......++..+..+.+++
T Consensus 155 ~~~ll~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 177 (299)
T 1s70_B 155 LQNEVNRQGVDIEAARKEEERIM--------------------------------------------------------- 177 (299)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH---------------------------------------------------------
T ss_pred HHHHHhhcCCCchhhhhhhhhHH---------------------------------------------------------
Confidence 77666543321111111100000
Q ss_pred HHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhccchhhHHHH
Q 004346 292 CINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLGIGIWRISRI 371 (760)
Q Consensus 292 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (760)
T Consensus 178 -------------------------------------------------------------------------------- 177 (299)
T 1s70_B 178 -------------------------------------------------------------------------------- 177 (299)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCccchhcccccC
Q 004346 372 KEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPEKKNTQQSRR 451 (760)
Q Consensus 372 ~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~ 451 (760)
...++.++..+.... ...+..
T Consensus 178 ----------~~~~~~~l~~~~~~~-------------------------------------------------~~~~~~ 198 (299)
T 1s70_B 178 ----------LRDARQWLNSGHIND-------------------------------------------------VRHAKS 198 (299)
T ss_dssp ----------HHHHHHHHHHTCCCC-------------------------------------------------CCCTTT
T ss_pred ----------HHHHHHHHhccCcch-------------------------------------------------hhhcCC
Confidence 112233333321100 134567
Q ss_pred CCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHhccchhhhhhccccCCCCchhhHHh
Q 004346 452 KETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENAFRKLDNQGNSALHYAA 531 (760)
Q Consensus 452 g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~in~~D~~G~T~LhlAa 531 (760)
|.||||+||..|+.++|++|++ .|++++.+|..|+||||+|+.+|+.+++++|+++|+ +++.+|..|+||||+|+
T Consensus 199 g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~t~l~~A~ 273 (299)
T 1s70_B 199 GGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC----DMEAVNKVGQTAFDVAD 273 (299)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCTTTSCC
T ss_pred CCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHH
Confidence 9999999999999999999996 589999999999999999999999999999999999 99999999999999997
Q ss_pred h
Q 004346 532 M 532 (760)
Q Consensus 532 ~ 532 (760)
+
T Consensus 274 ~ 274 (299)
T 1s70_B 274 E 274 (299)
T ss_dssp S
T ss_pred H
Confidence 5
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8.5e-36 Score=298.97 Aligned_cols=227 Identities=19% Similarity=0.185 Sum_probs=193.7
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHH
Q 004346 85 TKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPL 164 (760)
Q Consensus 85 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 164 (760)
+..+.||||.|+..|+.+.++.|++.+... ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|.|||
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L 77 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSL----ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPL 77 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGG----GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhh----hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHH
Confidence 346789999999999999999999876442 677889999999999999999999999999988 888999999999
Q ss_pred HHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCC
Q 004346 165 FLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAF 244 (760)
Q Consensus 165 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 244 (760)
|+|+..|+.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|++++.+ ++.+|..|.||||+|+..++
T Consensus 78 ~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-- 151 (231)
T 3aji_A 78 HIAASAGXDEIVKALLVKGAH---VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGN-- 151 (231)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC--
T ss_pred HHHHHcCHHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCC--
Confidence 999999999999999998877 677888999999999999999999999999888 88889999999999998775
Q ss_pred CccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcc
Q 004346 245 RSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQ 324 (760)
Q Consensus 245 ~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (760)
.++++.|+..|+++
T Consensus 152 -----~~~v~~Ll~~g~~~------------------------------------------------------------- 165 (231)
T 3aji_A 152 -----LKMVHILLFYKAST------------------------------------------------------------- 165 (231)
T ss_dssp -----HHHHHHHHHTTCCS-------------------------------------------------------------
T ss_pred -----HHHHHHHHhcCCCc-------------------------------------------------------------
Confidence 33444333332211
Q ss_pred cchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCC
Q 004346 325 NVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNP 404 (760)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tp 404 (760)
T Consensus 166 -------------------------------------------------------------------------------- 165 (231)
T 3aji_A 166 -------------------------------------------------------------------------------- 165 (231)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCccccccccccCCccchhcccccCCCcHHHHHHhcChHHHHHHHHHhCCcccccccc
Q 004346 405 ENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPEKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDA 484 (760)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~ 484 (760)
+.+|..|.||||+|+..|+.+++++|+++ |++++.+|.
T Consensus 166 -----------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~ 203 (231)
T 3aji_A 166 -----------------------------------------NIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENK 203 (231)
T ss_dssp -----------------------------------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCT
T ss_pred -----------------------------------------cccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCC
Confidence 24556789999999999999999999974 899999999
Q ss_pred CCCchHHHHHHcCcHHHHHHHHhccc
Q 004346 485 NGKNVVLLAVEHRQTHIYELLLKKKM 510 (760)
Q Consensus 485 ~G~T~Lh~A~~~~~~~iv~~Ll~~~a 510 (760)
.|+||||+|++.++.+++++|.++|+
T Consensus 204 ~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 204 EEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp TSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhhHHHHHHHHHccccc
Confidence 99999999999999999999999886
No 26
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=310.27 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=107.7
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCC---ccccccccCCCChHHHHHHHcCCH-HHHHHHHhcCCCccCCCCC
Q 004346 83 KITKSEDTALHLAAASGHSDVVCRLVETMGENE---SNILKIQNNRGNTALHLAAALGNV-EMCRCMASKDPKLVGARNK 158 (760)
Q Consensus 83 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~~d~~g~TpLh~Aa~~g~~-~~v~~Ll~~~~~~~~~~~~ 158 (760)
.+|..+.+|||.||..|+.++|++|++.+.+.. ...++..|..|.||||+|+..++. .++++|++.|++ ++.+|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-vn~~d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-VNVTSQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC-TTCCCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-CCCcCC
Confidence 457778899999999999999999999886531 223667888999999999988776 488999999999 899999
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHh
Q 004346 159 DSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILA 238 (760)
Q Consensus 159 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~ 238 (760)
+|+||||+|+..|+.+++++|++.+++ ++.++..|.||+|.|+..++.+++++|++.+++ ++.+|..|.||||+|+
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~ 160 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGAN---AGARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYAC 160 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCC---cCccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence 999999999999999999999999887 777899999999999999999999999999988 8888888888888888
Q ss_pred cCCC
Q 004346 239 GKPN 242 (760)
Q Consensus 239 ~~~~ 242 (760)
..|+
T Consensus 161 ~~g~ 164 (269)
T 4b93_B 161 SGGH 164 (269)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 8775
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.1e-35 Score=294.18 Aligned_cols=128 Identities=19% Similarity=0.190 Sum_probs=81.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcC--CCccCC-CCCCCCcHH
Q 004346 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKD--PKLVGA-RNKDSETPL 164 (760)
Q Consensus 88 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~--~~~~~~-~~~~g~tpL 164 (760)
|+||||+||..|+.+++++|++.+.+. .+.+|..|+||||+|+..|+.+++++|++.+ .+ ++. .|..|.|||
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~g~t~L 76 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSL----LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-LDDYPDDSGWTPF 76 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGG----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC-GGGCCCTTSCCHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccc----cccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-ccccCCCCCCCHH
Confidence 567777777777777777777766542 3446677777777777777777777777776 34 333 566667777
Q ss_pred HHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCC
Q 004346 165 FLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPD 221 (760)
Q Consensus 165 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 221 (760)
|+|+..|+.+++++|++.+.. .+++..+..|.||||+|+..|+.+++++|++++.+
T Consensus 77 ~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 132 (228)
T 2dzn_A 77 HIACSVGNLEVVKSLYDRPLK-PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132 (228)
T ss_dssp HHHHHHCCHHHHHHHHSSSSC-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHhCCCC-cccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC
Confidence 777777777777766666521 12455566666666666666666666666665544
No 28
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.1e-35 Score=298.21 Aligned_cols=219 Identities=21% Similarity=0.209 Sum_probs=196.3
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHH
Q 004346 123 NNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHA 202 (760)
Q Consensus 123 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~ 202 (760)
+..++||||.|+..|+.++++.|+..++..++.+|..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~ 79 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHI 79 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC---CCCcCCCCCCHHHH
Confidence 456899999999999999999999998877888999999999999999999999999999877 77899999999999
Q ss_pred HHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCC
Q 004346 203 AISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGT 282 (760)
Q Consensus 203 A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (760)
|+..|+.+++++|++++++ ++.+|..|.||||+|+..++ .++
T Consensus 80 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~------------------------------ 121 (231)
T 3aji_A 80 AASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNR-------HEI------------------------------ 121 (231)
T ss_dssp HHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHH------------------------------
T ss_pred HHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCC-------HHH------------------------------
Confidence 9999999999999999998 99999999999999999886 344
Q ss_pred CCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 004346 283 AKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLG 362 (760)
Q Consensus 283 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (760)
T Consensus 122 -------------------------------------------------------------------------------- 121 (231)
T 3aji_A 122 -------------------------------------------------------------------------------- 121 (231)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCcc
Q 004346 363 IGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPE 442 (760)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 442 (760)
+++|++++ .++
T Consensus 122 ----------------------~~~Ll~~g---------~~~-------------------------------------- 132 (231)
T 3aji_A 122 ----------------------AVMLLEGG---------ANP-------------------------------------- 132 (231)
T ss_dssp ----------------------HHHHHHTT---------CCT--------------------------------------
T ss_pred ----------------------HHHHHHcC---------CCC--------------------------------------
Confidence 44444442 111
Q ss_pred chhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHhccchhhhhhccccCC
Q 004346 443 KKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENAFRKLDNQ 522 (760)
Q Consensus 443 ~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~in~~D~~ 522 (760)
+.+|..|.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..
T Consensus 133 ---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~ 204 (231)
T 3aji_A 133 ---DAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA----SIYIENKE 204 (231)
T ss_dssp ---TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCTT
T ss_pred ---CCcCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCC----CCCCCCCC
Confidence 1445679999999999999999999997 589999999999999999999999999999999999 99999999
Q ss_pred CCchhhHHhhcCCCCCC
Q 004346 523 GNSALHYAAMFENHRPS 539 (760)
Q Consensus 523 G~T~LhlAa~~g~~~~~ 539 (760)
|+||||+|+..++.+++
T Consensus 205 g~t~l~~A~~~~~~~i~ 221 (231)
T 3aji_A 205 EKTPLQVAKGGLGLILK 221 (231)
T ss_dssp SCCHHHHSCHHHHHHHH
T ss_pred CCCHHHHHHhhHHHHHH
Confidence 99999999988775554
No 29
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=8.6e-35 Score=293.14 Aligned_cols=231 Identities=21% Similarity=0.232 Sum_probs=202.8
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCC
Q 004346 82 AKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSE 161 (760)
Q Consensus 82 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 161 (760)
+..|..|.||||.|+..|+.+++++|++.|.+ ++.+|..|.||||+|+..|+.+++++|++.+++.....+..|.
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 77 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD-----VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS 77 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTB
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCC-----cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCC
Confidence 45688999999999999999999999999987 8889999999999999999999999999999985556666799
Q ss_pred cHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCC
Q 004346 162 TPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKP 241 (760)
Q Consensus 162 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~ 241 (760)
||||+|+..|+.+++++|++.+.+ ++.++..|.||||.|+..|+.+++++|++++++ ++.+|..|.||||+|+..+
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~ 153 (240)
T 3eu9_A 78 TPLHWATRQGHLSMVVQLMKYGAD---PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRT 153 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHC
T ss_pred ChhHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhC
Confidence 999999999999999999999877 777899999999999999999999999999998 9999999999999999766
Q ss_pred CCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCC
Q 004346 242 NAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEED 321 (760)
Q Consensus 242 ~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 321 (760)
+. ..+++.|+..|++++
T Consensus 154 ~~------~~~~~~L~~~~~~~~--------------------------------------------------------- 170 (240)
T 3eu9_A 154 HS------VDPTRLLLTFNVSVN--------------------------------------------------------- 170 (240)
T ss_dssp CS------STTHHHHHHTTCCTT---------------------------------------------------------
T ss_pred Ch------HHHHHHHHhcCCCcc---------------------------------------------------------
Confidence 42 223333333222211
Q ss_pred CcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCC
Q 004346 322 PQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNG 401 (760)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G 401 (760)
T Consensus 171 -------------------------------------------------------------------------------- 170 (240)
T 3eu9_A 171 -------------------------------------------------------------------------------- 170 (240)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCccchhccccc-CCCcHHHHHHhcChHHHHHHHHHhCCcccc
Q 004346 402 QNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPEKKNTQQSR-RKETPLLIATKTGVLEIVEKILDAFPVAIQ 480 (760)
Q Consensus 402 ~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~-~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~ 480 (760)
..+. .|.||||+|+..|+.+++++|++. |++++
T Consensus 171 ---------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~ 204 (240)
T 3eu9_A 171 ---------------------------------------------LGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVD 204 (240)
T ss_dssp ---------------------------------------------CCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTT
T ss_pred ---------------------------------------------hhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence 2232 689999999999999999999986 89999
Q ss_pred ccccCCCchHHHHHHcCcHHHHHHHHhccc
Q 004346 481 DEDANGKNVVLLAVEHRQTHIYELLLKKKM 510 (760)
Q Consensus 481 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a 510 (760)
.+|..|+||||+|++.|+.+++++|++.++
T Consensus 205 ~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 205 AQNIKGESALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp CBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence 999999999999999999999999999987
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=4.8e-35 Score=292.81 Aligned_cols=214 Identities=20% Similarity=0.222 Sum_probs=179.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCccc-CCCCCChHHHHHH
Q 004346 126 GNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLG-RKSNGDTILHAAI 204 (760)
Q Consensus 126 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~g~t~Lh~A~ 204 (760)
|+||||+|+..|+.++++.|++.+++..+.+|..|.||||+|+..|+.+++++|++.+++.. ++. .+..|+||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-LDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC-GGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-ccccCCCCCCCHHHHHH
Confidence 78899999999999999999998888666688889999999999999999999998885522 334 7788899999999
Q ss_pred HcCCHHHHHHHHHhC--CCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCC
Q 004346 205 SGDYFSLAFHIIRCY--PDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGT 282 (760)
Q Consensus 205 ~~~~~~iv~~Ll~~~--~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (760)
..|+.+++++|++++ ++ ++..|..|.||||+|+..++ .++++.|++.|++++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~------------------ 134 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKW-------FEVSQFLIENGASVR------------------ 134 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCSC------------------
T ss_pred HcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCC-------HhHHHHHHHcCCCcc------------------
Confidence 999999999999887 66 78888889999999998886 688999998887543
Q ss_pred CCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 004346 283 AKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLG 362 (760)
Q Consensus 283 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (760)
T Consensus 135 -------------------------------------------------------------------------------- 134 (228)
T 2dzn_A 135 -------------------------------------------------------------------------------- 134 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCcc
Q 004346 363 IGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPE 442 (760)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 442 (760)
T Consensus 135 -------------------------------------------------------------------------------- 134 (228)
T 2dzn_A 135 -------------------------------------------------------------------------------- 134 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHH-hccchhhhhhccccC
Q 004346 443 KKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLL-KKKMIMENAFRKLDN 521 (760)
Q Consensus 443 ~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll-~~~a~~~~~in~~D~ 521 (760)
.+|..|.||||+|+..|+.+++++|++..+++++.+|..|+||||+|+..|+.+++++|+ +.|+ +++.+|.
T Consensus 135 ----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga----~~~~~~~ 206 (228)
T 2dzn_A 135 ----IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA----EYDLVDN 206 (228)
T ss_dssp ----CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC----CSCCBCT
T ss_pred ----ccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----CCCccCC
Confidence 234468899999999999999999987644888889999999999999999999999999 7888 8889999
Q ss_pred CCCchhhHHhhcC
Q 004346 522 QGNSALHYAAMFE 534 (760)
Q Consensus 522 ~G~T~LhlAa~~g 534 (760)
+|+||||+|++.+
T Consensus 207 ~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 207 KGAKAEDVALNEQ 219 (228)
T ss_dssp TSCBGGGGCSSTT
T ss_pred CCCcHHHHHHHHH
Confidence 9999999987754
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=304.77 Aligned_cols=218 Identities=20% Similarity=0.241 Sum_probs=165.6
Q ss_pred ccccCCCChHHHHHHHcCCHHHHHHHHhcCCCc-------cCCCCCCCCcHHHHHHHcCCh-HHHHHHHhcCCCCCCccc
Q 004346 120 KIQNNRGNTALHLAAALGNVEMCRCMASKDPKL-------VGARNKDSETPLFLAALNGKK-AAFLCLHFLSHDKDSSLG 191 (760)
Q Consensus 120 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~-------~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~~~~~~~ 191 (760)
..+|..+.|||+.||..|+.++|++|++.+++. ++..+..|.||||+|+..++. .++++|++.|++ ++.
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad---vn~ 81 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG---VNV 81 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC---TTC
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC---CCC
Confidence 357788899999999999999999999988752 466788899999999988775 478899988877 888
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhc
Q 004346 192 RKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKY 271 (760)
Q Consensus 192 ~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~ 271 (760)
+|.+|+||||+|+..|+.+++++|++.+++ ++.++.+|.||+|+|+..++ .+
T Consensus 82 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~-------~~-------------------- 133 (269)
T 4b93_B 82 TSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGH-------FQ-------------------- 133 (269)
T ss_dssp CCTTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTC-------HH--------------------
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccCh-------HH--------------------
Confidence 999999999999999999999999999999 99999999999999998875 23
Q ss_pred ccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHH
Q 004346 272 DYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSK 351 (760)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (760)
T Consensus 134 -------------------------------------------------------------------------------- 133 (269)
T 4b93_B 134 -------------------------------------------------------------------------------- 133 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccc
Q 004346 352 LMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTET 431 (760)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (760)
+++.|++.+ .+|
T Consensus 134 --------------------------------~~~~Ll~~g---------~~~--------------------------- 145 (269)
T 4b93_B 134 --------------------------------VVKCLLDSN---------AKP--------------------------- 145 (269)
T ss_dssp --------------------------------HHHHHHHTT---------CCS---------------------------
T ss_pred --------------------------------HHHHHHHCC---------CCC---------------------------
Confidence 444555442 111
Q ss_pred cccccccCCccchhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHhccch
Q 004346 432 SQKNIVLSTPEKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMI 511 (760)
Q Consensus 432 ~~~~~~~~~~~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~ 511 (760)
+.+|..|+||||+||..|+.++|++||+ .|+++|.+|..|+||||+||.+|+.++|++|+++|+
T Consensus 146 --------------n~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga- 209 (269)
T 4b93_B 146 --------------NKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA- 209 (269)
T ss_dssp --------------CCCCTTCCCHHHHHHHTTCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred --------------CCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCC-
Confidence 2456689999999999999999999997 589999999999999999999999999999999999
Q ss_pred hhhhhccccCCCCchhhHHhhcCC
Q 004346 512 MENAFRKLDNQGNSALHYAAMFEN 535 (760)
Q Consensus 512 ~~~~in~~D~~G~T~LhlAa~~g~ 535 (760)
++|.+|.+|+||||+|+++++
T Consensus 210 ---d~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 210 ---SVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp ---CSCCCCTTSCCSGGGSCTTCH
T ss_pred ---CCCCcCCCCCCHHHHHHhCCc
Confidence 999999999999999998775
No 32
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4.1e-35 Score=303.62 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=150.8
Q ss_pred HHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHH
Q 004346 61 AMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVE 140 (760)
Q Consensus 61 a~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~ 140 (760)
+...+...+.++|.+. +++.+|..|+||||+||..|+.++|++|++.|++ ++.+ +|+||||+|+..|+.+
T Consensus 7 i~~~~~~~v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~--~g~t~L~~A~~~g~~~ 76 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-----KNLL--ENEFPLHQAATLEDTK 76 (285)
T ss_dssp GGGCCHHHHHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-----GSCC--TTCCHHHHHTTSSSCH
T ss_pred HHhcCHHHHHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----CCCC--CCCCHHHHHHHcCCHH
Confidence 4567888999999884 4678899999999999999999999999999887 6666 4999999999999999
Q ss_pred HHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCC-ChHHHHHHHcCCHHHHHHHHHhC
Q 004346 141 MCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNG-DTILHAAISGDYFSLAFHIIRCY 219 (760)
Q Consensus 141 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g-~t~Lh~A~~~~~~~iv~~Ll~~~ 219 (760)
++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.++..| .||||+|+..|+.+++++|++++
T Consensus 77 ~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 77 IVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG---GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 99999999999 899999999999999999999999999999877 78899999 79999999999999999999999
Q ss_pred CCCcccccc-CCCcHHHHHhcCCC
Q 004346 220 PDLVNCVNE-NGLSPLHILAGKPN 242 (760)
Q Consensus 220 ~~~~~~~d~-~g~tpL~~A~~~~~ 242 (760)
++ . .+. .|.||||+|+..++
T Consensus 153 ~~-~--~~~~~g~t~L~~A~~~g~ 173 (285)
T 3kea_A 153 PS-T--FDLAILLSCIHITIKNGH 173 (285)
T ss_dssp CT-T--CCCSTHHHHHHHHHHTTC
T ss_pred Cc-c--ccccCCccHHHHHHHcCh
Confidence 87 3 333 89999999999986
No 33
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=5.3e-35 Score=309.03 Aligned_cols=279 Identities=12% Similarity=0.040 Sum_probs=203.8
Q ss_pred cCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccc-c-----------ccCCCChHH
Q 004346 63 RGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILK-I-----------QNNRGNTAL 130 (760)
Q Consensus 63 ~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~-----------~d~~g~TpL 130 (760)
....+.+..+++. +++++..|..|.|++| |+.++|+.|+++|.+.....+. . +.....+.+
T Consensus 29 ~~~~dlv~~ll~~--ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (327)
T 1sw6_A 29 TFTHDLTSDFLSS--PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ 101 (327)
T ss_dssp ECCTTCCCSTTTS--SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------------------
T ss_pred hhcCchHHHHhhC--CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchh
Confidence 3444556666666 7888888999999988 9999999999999663211110 0 111222345
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccCC-CCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCC-
Q 004346 131 HLAAALGNVEMCRCMASKDPKLVGA-RNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDY- 208 (760)
Q Consensus 131 h~Aa~~g~~~~v~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~- 208 (760)
|+|+..+..+++++|++.|++ ++. +|..|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+
T Consensus 102 ~~a~~~~~~~~~~~l~~~g~d-vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad---~n~~d~~g~TpLh~A~~~g~~ 177 (327)
T 1sw6_A 102 HVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKSVNN 177 (327)
T ss_dssp --CHHHHHHHHHHHCTTSCCC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTBCCTTCCCHHHHHHHSSHH
T ss_pred HHHHHhhHHHHHHHHHhcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhccc
Confidence 888888899999999999999 888 899999999999999999999999999887 78899999999999999998
Q ss_pred --HHHHHHHHHhCCCCccccccCCCcHHHHHhc----CCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCC
Q 004346 209 --FSLAFHIIRCYPDLVNCVNENGLSPLHILAG----KPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGT 282 (760)
Q Consensus 209 --~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~----~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (760)
.++++.|++.+...++.+|..|.||||+|+. .++ .++++.|++.++....
T Consensus 178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~-------~~~v~~Ll~~~~~~~~----------------- 233 (327)
T 1sw6_A 178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC-------SAAAKYYLDILMGWIV----------------- 233 (327)
T ss_dssp HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC-------HHHHHHHHHHHHHHHH-----------------
T ss_pred ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc-------HHHHHHHHHHHHHHHh-----------------
Confidence 6888888888744499999999999999998 554 5777777654432111
Q ss_pred CCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 004346 283 AKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLG 362 (760)
Q Consensus 283 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (760)
T Consensus 234 -------------------------------------------------------------------------------- 233 (327)
T 1sw6_A 234 -------------------------------------------------------------------------------- 233 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCcc
Q 004346 363 IGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPE 442 (760)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 442 (760)
+... . .+ .. .....+
T Consensus 234 ---------------------------~~~~--------~-~i---------------------~~--------~~~~~g 248 (327)
T 1sw6_A 234 ---------------------------KKQN--------R-PI---------------------QS--------GTNEKE 248 (327)
T ss_dssp ---------------------------HGGG--------C-CE---------------------EE--------C-----
T ss_pred ---------------------------cccc--------h-HH---------------------Hh--------hhhccc
Confidence 0000 0 00 00 000112
Q ss_pred chhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCcHHHHHHHHhccchhhhhhccccCC
Q 004346 443 KKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENAFRKLDNQ 522 (760)
Q Consensus 443 ~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~in~~D~~ 522 (760)
...+.+|..|.||||.|+. +++|++. ++|.+|..|+||||+|+++|+.++|++|+++|+ +++.+|.+
T Consensus 249 ~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga----d~~~~d~~ 315 (327)
T 1sw6_A 249 SKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGA----DPFIANKS 315 (327)
T ss_dssp -----------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC----CTTCCCTT
T ss_pred CCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcccCCC
Confidence 2234678899999999996 8999986 699999999999999999999999999999999 99999999
Q ss_pred CCchhhHHhhcC
Q 004346 523 GNSALHYAAMFE 534 (760)
Q Consensus 523 G~T~LhlAa~~g 534 (760)
|+||||+|++.|
T Consensus 316 G~TpL~~A~~~g 327 (327)
T 1sw6_A 316 GLRPVDFGAGLE 327 (327)
T ss_dssp SCCGGGGTCC--
T ss_pred CCCHHHHHHhcC
Confidence 999999999875
No 34
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.1e-34 Score=295.18 Aligned_cols=185 Identities=18% Similarity=0.118 Sum_probs=139.6
Q ss_pred hhccchHHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCC
Q 004346 49 SMQMEIDNLFESAMRGHWDHIVQAYESNPMS-QEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGN 127 (760)
Q Consensus 49 ~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~-~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~ 127 (760)
.++.+.||||.||..|+.+.++.++...... .++..|..|+||||+||..|+.++|++|+++|++ ++.+|..|+
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~g~ 79 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-----VLVAERGGH 79 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----SSCCCTTSC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCC
Confidence 4566889999999999999999999873222 2778899999999999999999999999999988 889999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCcc------------CCCCCCCCcHHHHHHHcCChHHHHHH-HhcCCCCCCcccCCC
Q 004346 128 TALHLAAALGNVEMCRCMASKDPKLV------------GARNKDSETPLFLAALNGKKAAFLCL-HFLSHDKDSSLGRKS 194 (760)
Q Consensus 128 TpLh~Aa~~g~~~~v~~Ll~~~~~~~------------~~~~~~g~tpL~~A~~~g~~~~v~~L-l~~~~~~~~~~~~~~ 194 (760)
||||+|+..|+.+++++|++.++... ......+.++++.++..+.......+ ...+ .+++.++.
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 156 (282)
T 1oy3_D 80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR---LQLEAENY 156 (282)
T ss_dssp CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGG---GGTTCCCT
T ss_pred CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhh---hcCCCcCC
Confidence 99999999999999999999887521 12234566777777766654433322 2222 33677899
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCCCcccccc-CCCcHHHHHhcCCC
Q 004346 195 NGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNE-NGLSPLHILAGKPN 242 (760)
Q Consensus 195 ~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~-~g~tpL~~A~~~~~ 242 (760)
.|.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+..++
T Consensus 157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~ 204 (282)
T 1oy3_D 157 DGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQA 204 (282)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTC
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCC
Confidence 999999999999999999999999999 888875 49999999999886
No 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4.9e-34 Score=295.52 Aligned_cols=227 Identities=13% Similarity=0.108 Sum_probs=194.6
Q ss_pred cCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHH
Q 004346 98 SGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFL 177 (760)
Q Consensus 98 ~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 177 (760)
..+.+.+..++..+ + ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+ +|+||||+|+..|+.++++
T Consensus 9 ~~~~~~v~~lL~~~-~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~--~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 9 TWKSKQLKSFLSSK-D-----TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GCCHHHHHHHHHST-T-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC--TTCCHHHHHTTSSSCHHHH
T ss_pred hcCHHHHHHHHHhC-C-----CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC--CCCCHHHHHHHcCCHHHHH
Confidence 34444444444433 2 789999999999999999999999999999998 7777 4999999999999999999
Q ss_pred HHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCC-CcHHHHHhcCCCCCCccchhHHHHHH
Q 004346 178 CLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENG-LSPLHILAGKPNAFRSSSCLGLFDLM 256 (760)
Q Consensus 178 ~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g-~tpL~~A~~~~~~~~s~~~l~~~~~l 256 (760)
+|++.+++ ++.+|..|+||||+|+..|+.+++++|++++++ ++.+|..| .||||+|+..++ .+
T Consensus 80 ~Ll~~ga~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~-------~~----- 143 (285)
T 3kea_A 80 ILLFSGLD---DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLND-------VS----- 143 (285)
T ss_dssp HHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTC-------HH-----
T ss_pred HHHHCCCC---CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCC-------HH-----
Confidence 99999887 778999999999999999999999999999998 99999999 899999999986 34
Q ss_pred HhcccCchhhhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccC
Q 004346 257 LYDCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKED 336 (760)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (760)
T Consensus 144 -------------------------------------------------------------------------------- 143 (285)
T 3kea_A 144 -------------------------------------------------------------------------------- 143 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCC
Q 004346 337 HFCPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEP 416 (760)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~ 416 (760)
++++|++++..
T Consensus 144 -----------------------------------------------~v~~Ll~~g~~---------------------- 154 (285)
T 3kea_A 144 -----------------------------------------------IVSYFLSEIPS---------------------- 154 (285)
T ss_dssp -----------------------------------------------HHHHHHTTSCT----------------------
T ss_pred -----------------------------------------------HHHHHHhCCCc----------------------
Confidence 44455544210
Q ss_pred CCCCCCCCCCCCccccccccccCCccchhcccc-cCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCch-HHHHH
Q 004346 417 FLVPGARPVPENTETSQKNIVLSTPEKKNTQQS-RRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNV-VLLAV 494 (760)
Q Consensus 417 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~-Lh~A~ 494 (760)
..+ ..|.||||+|+..|+.+++++|+++ |++++.+|..|+|| ||+|+
T Consensus 155 ------------------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~ 203 (285)
T 3kea_A 155 ------------------------------TFDLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAI 203 (285)
T ss_dssp ------------------------------TCCCSTHHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHH
T ss_pred ------------------------------cccccCCccHHHHHHHcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHH
Confidence 011 1689999999999999999999986 89999999999998 99999
Q ss_pred HcCcHHHHHHHHhccchhhhhhccccCCCCchhhHHhhcCCCCCCC
Q 004346 495 EHRQTHIYELLLKKKMIMENAFRKLDNQGNSALHYAAMFENHRPSS 540 (760)
Q Consensus 495 ~~~~~~iv~~Ll~~~a~~~~~in~~D~~G~T~LhlAa~~g~~~~~~ 540 (760)
.+|+.+++++|+++|+ +++.+| +.|+..|+.++++
T Consensus 204 ~~~~~~~v~~Ll~~ga----d~~~~~-------~~a~~~~~~~iv~ 238 (285)
T 3kea_A 204 DNKDIEMLQALFKYDI----NIYSAN-------LENVLLDDAEIAK 238 (285)
T ss_dssp HHTCHHHHHHHTTSCB----CSTTTT-------GGGGTTTCHHHHH
T ss_pred HcCCHHHHHHHHHcCC----CCCCCC-------hhhhhcCCHHHHH
Confidence 9999999999999999 888888 4677788877764
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.2e-33 Score=281.67 Aligned_cols=214 Identities=23% Similarity=0.237 Sum_probs=160.6
Q ss_pred CCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHH
Q 004346 99 GHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLC 178 (760)
Q Consensus 99 g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 178 (760)
|+.+++++|++.|.+. .+..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++
T Consensus 2 g~~~~i~~Ll~~g~~~----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~ 76 (223)
T 2f8y_A 2 DAPAVISDFIYQGASL----HNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQI 76 (223)
T ss_dssp ---CCEETTEETTCCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHcCCCc----ccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 5666777777776652 233467777777777777777777777777777 67777777777777777777777777
Q ss_pred HHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHh
Q 004346 179 LHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLY 258 (760)
Q Consensus 179 Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~ 258 (760)
|++.+... ++.++..|.||||+|+..++.+++++|++.+++ ++.+|..|.||||+|+..++ .++++.|++
T Consensus 77 Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~ 146 (223)
T 2f8y_A 77 LIRNRATD--LDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNN-------VDAAVVLLK 146 (223)
T ss_dssp HHHBTTSC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTC-------HHHHHHHHH
T ss_pred HHHcCCCC--cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCC-------HHHHHHHHH
Confidence 77766522 556677777777777777777778877777777 77777778888888877765 233333333
Q ss_pred cccCchhhhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCC
Q 004346 259 DCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHF 338 (760)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (760)
.|+++
T Consensus 147 ~g~~~--------------------------------------------------------------------------- 151 (223)
T 2f8y_A 147 NGANK--------------------------------------------------------------------------- 151 (223)
T ss_dssp TTCCT---------------------------------------------------------------------------
T ss_pred cCCCC---------------------------------------------------------------------------
Confidence 22211
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCC
Q 004346 339 CPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFL 418 (760)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~ 418 (760)
T Consensus 152 -------------------------------------------------------------------------------- 151 (223)
T 2f8y_A 152 -------------------------------------------------------------------------------- 151 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccccccccccCCccchhcccccCCCcHHHHHHhcChHHHHHHHHHhCCccccccccCCCchHHHHHHcCc
Q 004346 419 VPGARPVPENTETSQKNIVLSTPEKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQ 498 (760)
Q Consensus 419 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~LL~~~~~~i~~~d~~G~T~Lh~A~~~~~ 498 (760)
+.+|..|.||||+|+..|+.+++++|++. +++++.+|..|+||||+|++.++
T Consensus 152 ---------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~ 203 (223)
T 2f8y_A 152 ---------------------------DMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMH 203 (223)
T ss_dssp ---------------------------TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTC
T ss_pred ---------------------------CCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCHHHHHHHhcc
Confidence 13455789999999999999999999974 89999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 004346 499 THIYELLLKKKM 510 (760)
Q Consensus 499 ~~iv~~Ll~~~a 510 (760)
.+++++|+++|+
T Consensus 204 ~~i~~~L~~~g~ 215 (223)
T 2f8y_A 204 HDIVRLLDEYNL 215 (223)
T ss_dssp HHHHHHHHHTTC
T ss_pred hHHHHHHHHcCC
Confidence 999999999998
No 37
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=6.1e-34 Score=286.48 Aligned_cols=225 Identities=21% Similarity=0.225 Sum_probs=170.8
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCc
Q 004346 83 KITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSET 162 (760)
Q Consensus 83 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t 162 (760)
.+|.+|+||||+|+..|+.+++++|++.+... ...++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|.|
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 80 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNT 80 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhcc-HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCC
Confidence 45788899999999999988888888876531 122778888889999999999999999999888888 8888888888
Q ss_pred HHHHHHHcCChHHHHHHHhcCCCC---CCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhc
Q 004346 163 PLFLAALNGKKAAFLCLHFLSHDK---DSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAG 239 (760)
Q Consensus 163 pL~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~ 239 (760)
|||+|+..|+.+++++|++.+.+. ..++..+..|.||||+|+..|+.+++++|++++++ ++
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~--------------- 144 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VN--------------- 144 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TT---------------
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CC---------------
Confidence 888888888888888888877642 12344555666666666666666666666665544 21
Q ss_pred CCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCCCCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCc
Q 004346 240 KPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYGSHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDE 319 (760)
Q Consensus 240 ~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 319 (760)
T Consensus 145 -------------------------------------------------------------------------------- 144 (236)
T 1ikn_D 145 -------------------------------------------------------------------------------- 144 (236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccC
Q 004346 320 EDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALLIVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDD 399 (760)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~ 399 (760)
T Consensus 145 -------------------------------------------------------------------------------- 144 (236)
T 1ikn_D 145 -------------------------------------------------------------------------------- 144 (236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccCCccchhccccc-CCCcHHHHHHhcChHHHHHHHHHhCCcc
Q 004346 400 NGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVLSTPEKKNTQQSR-RKETPLLIATKTGVLEIVEKILDAFPVA 478 (760)
Q Consensus 400 ~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~-~g~tpLh~Aa~~g~~eiv~~LL~~~~~~ 478 (760)
.++. .|.||||+|+..|+.++|++|++ .|++
T Consensus 145 -----------------------------------------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~ 176 (236)
T 1ikn_D 145 -----------------------------------------------AQEPCNGRTALHLAVDLQNPDLVSLLLK-CGAD 176 (236)
T ss_dssp -----------------------------------------------CCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCC
T ss_pred -----------------------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence 2232 68999999999999999999997 5899
Q ss_pred ccccccCCCchHHHHHHcCcHHHHHHHHhccchhhhhhccccCCCCchhhHHhhcCC
Q 004346 479 IQDEDANGKNVVLLAVEHRQTHIYELLLKKKMIMENAFRKLDNQGNSALHYAAMFEN 535 (760)
Q Consensus 479 i~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~in~~D~~G~T~LhlAa~~g~ 535 (760)
++.+|..|+||||+|+.+|+.+++++|+++|+. .....++.+|.||.+.+.....
T Consensus 177 ~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~~ 231 (236)
T 1ikn_D 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE--NLQMLPESEDEESYDTESEFTE 231 (236)
T ss_dssp SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG--GGSSCCCCCTTTCCCCC-----
T ss_pred CCcccCCCCCHHHHHHccCchHHHHHHHHcchh--hhhcCCccchHHHHhhhccccc
Confidence 999999999999999999999999999999982 2334899999999998876554
No 38
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=280.84 Aligned_cols=223 Identities=20% Similarity=0.182 Sum_probs=195.6
Q ss_pred cccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCCh
Q 004346 119 LKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDT 198 (760)
Q Consensus 119 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t 198 (760)
++..|..|.||||.|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.+.+. ....+..|.|
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~~~t 78 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV--DQLGGDLNST 78 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCBTTTTBC
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc--hhhcCCcCCC
Confidence 456788999999999999999999999999998 8999999999999999999999999999998873 2234556999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhhhhhhcccccCCC
Q 004346 199 ILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDELREEKYDYSKNYG 278 (760)
Q Consensus 199 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 278 (760)
|||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++ .++
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~-------~~~-------------------------- 124 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGH-------TSI-------------------------- 124 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHH--------------------------
T ss_pred hhHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCH-------HHH--------------------------
Confidence 99999999999999999999998 89999999999999999886 344
Q ss_pred CCCCCCCCchhHhHHhHHHHHHHHHHHhhccCCCCCCCCCcCCCcccchhhccccccCCCCCCCCchhHHHHHHHHHHHH
Q 004346 279 SHGTAKFPENYRTCINFFRFIWTSLRILSGLLTKPKDELDEEDPQQNVISREKEDKEDHFCPPNCTTFVLFSKLMMKALL 358 (760)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (760)
T Consensus 125 -------------------------------------------------------------------------------- 124 (240)
T 3eu9_A 125 -------------------------------------------------------------------------------- 124 (240)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhccchhhHHHHHHHHHHhHHHHHHHHHHHhccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccc
Q 004346 359 IVLGIGIWRISRIKEKKVRHKWAYLVMKELVQCASLYKYDDNGQNPENSRLDNKHGEPFLVPGARPVPENTETSQKNIVL 438 (760)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~~~~d~~G~tpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 438 (760)
++.|++++ .++
T Consensus 125 --------------------------~~~Ll~~~---------~~~---------------------------------- 135 (240)
T 3eu9_A 125 --------------------------VAYLIAKG---------QDV---------------------------------- 135 (240)
T ss_dssp --------------------------HHHHHHTT---------CCT----------------------------------
T ss_pred --------------------------HHHHHhcC---------CCc----------------------------------
Confidence 44444442 110
Q ss_pred CCccchhcccccCCCcHHHHHHhcCh-HHHHHHHHHhCCcccccccc-CCCchHHHHHHcCcHHHHHHHHhccchhhhhh
Q 004346 439 STPEKKNTQQSRRKETPLLIATKTGV-LEIVEKILDAFPVAIQDEDA-NGKNVVLLAVEHRQTHIYELLLKKKMIMENAF 516 (760)
Q Consensus 439 ~~~~~~~~~~d~~g~tpLh~Aa~~g~-~eiv~~LL~~~~~~i~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~~a~~~~~i 516 (760)
+.+|..|.||||+|+..|+ .+++++|++ .+.+++..+. .|+||||+|+.+|+.+++++|+++|+ ++
T Consensus 136 -------~~~~~~g~t~l~~a~~~~~~~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~ 203 (240)
T 3eu9_A 136 -------DMMDQNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA----NV 203 (240)
T ss_dssp -------TCCCTTSCCHHHHHHHHCCSSTTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC----CT
T ss_pred -------cccCCCCCcHHHHHHHhCChHHHHHHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC----CC
Confidence 1455679999999997776 788888886 5899999997 99999999999999999999999999 99
Q ss_pred ccccCCCCchhhHHhhcCCCCCC
Q 004346 517 RKLDNQGNSALHYAAMFENHRPS 539 (760)
Q Consensus 517 n~~D~~G~T~LhlAa~~g~~~~~ 539 (760)
+.+|..|+||||+|++.|+.+++
T Consensus 204 ~~~~~~g~t~l~~A~~~~~~~~v 226 (240)
T 3eu9_A 204 DAQNIKGESALDLAKQRKNVWMI 226 (240)
T ss_dssp TCBCTTSCBHHHHHHHTTCHHHH
T ss_pred CCcCCCCCCHHHHHHHcCcHHHH
Confidence 99999999999999999997776
No 39
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.5e-33 Score=290.87 Aligned_cols=174 Identities=20% Similarity=0.172 Sum_probs=149.1
Q ss_pred ccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHH
Q 004346 51 QMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTAL 130 (760)
Q Consensus 51 ~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpL 130 (760)
..+.++|+.||..|+.+.++.+++. +.+++..|..|.||||+||..|+.+++++|+++|++ ++.+|..|+|||
T Consensus 38 ~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~g~tpL 110 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-----INQPDNEGWIPL 110 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHH
T ss_pred cCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCcHH
Confidence 4567999999999999999999998 788888999999999999999999999999999988 889999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHH
Q 004346 131 HLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFS 210 (760)
Q Consensus 131 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~ 210 (760)
|+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.++++.++...... ++..+..+.++++ .
T Consensus 111 ~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~--~~~~~~~~~~~~~--------~ 179 (299)
T 1s70_B 111 HAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD--IEAARKEEERIML--------R 179 (299)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHH--------H
T ss_pred HHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCC--chhhhhhhhhHHH--------H
Confidence 999999999999999999999 8999999999999999999999999887654321 3333333334443 3
Q ss_pred HHHHHHHhCCCCccccccCCCcHHHHHhcCCC
Q 004346 211 LAFHIIRCYPDLVNCVNENGLSPLHILAGKPN 242 (760)
Q Consensus 211 iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~ 242 (760)
.+..++..+.......+..|.||||+|+..|+
T Consensus 180 ~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~ 211 (299)
T 1s70_B 180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211 (299)
T ss_dssp HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred HHHHHHhccCcchhhhcCCCCCHHHHHHHCCc
Confidence 34566677766567778999999999999886
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=1.4e-31 Score=268.40 Aligned_cols=145 Identities=23% Similarity=0.254 Sum_probs=97.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHh-hCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCcc----CCCCCCCC
Q 004346 87 SEDTALHLAAASGHSDVVCRLVET-MGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLV----GARNKDSE 161 (760)
Q Consensus 87 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~----~~~~~~g~ 161 (760)
.|+||||+||..|+.+++++|++. +.+ ++.+|..|+||||+|+..|+.+++++|++.+++.. +.+|..|.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~ 76 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE-----VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ 76 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC-----cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCc
Confidence 478888888888888888888887 555 77888888888888888888888888888887621 55667788
Q ss_pred cHHHHHHHcCChHHHHHHHhcCCCCCCcccCCC-------------CCChHHHHHHHcCCHHHHHHHHHhCCCCcccccc
Q 004346 162 TPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKS-------------NGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNE 228 (760)
Q Consensus 162 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-------------~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~ 228 (760)
||||+|+..|+.+++++|++.+++ ++.++. .|+||||+|+..|+.+++++|++++++ ++.+|.
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~ 152 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGAS---VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDS 152 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC---TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCC---CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCC
Confidence 888888888888888888887766 333332 345555555555555555555544444 443343
Q ss_pred CCCcHHHHHhcC
Q 004346 229 NGLSPLHILAGK 240 (760)
Q Consensus 229 ~g~tpL~~A~~~ 240 (760)
+|.||||+|+..
T Consensus 153 ~g~t~L~~A~~~ 164 (232)
T 2rfa_A 153 LGNTVLHILILQ 164 (232)
T ss_dssp TSCCHHHHHHTC
T ss_pred CCCCHHHHHHHc
Confidence 344443333333
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=2.9e-33 Score=295.69 Aligned_cols=193 Identities=17% Similarity=0.069 Sum_probs=146.2
Q ss_pred hhhhcccCCCCCchhhhhhhccchHHHHHHHHcCCHHHHHHHHHcCCCCcccc-----------------cCCCCCcHHH
Q 004346 31 GVEEMDSNSLSTEDEEEKSMQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAK-----------------ITKSEDTALH 93 (760)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~-----------------~d~~g~t~Lh 93 (760)
...+++..+++.+.+.+..+..+.++++ |+.+.++.+|++ +.+++. ......+.+|
T Consensus 30 ~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~--g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (327)
T 1sw6_A 30 FTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQR--LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 102 (327)
T ss_dssp CCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHH--HHC------------------------------
T ss_pred hcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHh--ccCCccccchHhhhcccccccccccCCccchhH
Confidence 3456677888888888887777777765 999999999988 433322 1112233468
Q ss_pred HHHHcCCHHHHHHHHHhhCcCCcccccc-ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCC
Q 004346 94 LAAASGHSDVVCRLVETMGENESNILKI-QNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGK 172 (760)
Q Consensus 94 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 172 (760)
+|+..+..++++.|++.|.+ ++. +|..|+||||+||..|+.++|++|+++|++ ++.+|..|+||||+|+..|+
T Consensus 103 ~a~~~~~~~~~~~l~~~g~d-----vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~ 176 (327)
T 1sw6_A 103 VSFDSLLQEVNDAFPNTQLN-----LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVN 176 (327)
T ss_dssp -CHHHHHHHHHHHCTTSCCC-----SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSH
T ss_pred HHHHhhHHHHHHHHHhcCCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcc
Confidence 88888889999999999888 888 899999999999999999999999999999 89999999999999999998
Q ss_pred ---hHHHHHHHhcCCCCCCcccCCCCCChHHHHHHH----cCCHHHHHHHHHh--------------------CCCCccc
Q 004346 173 ---KAAFLCLHFLSHDKDSSLGRKSNGDTILHAAIS----GDYFSLAFHIIRC--------------------YPDLVNC 225 (760)
Q Consensus 173 ---~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~----~~~~~iv~~Ll~~--------------------~~~~~~~ 225 (760)
.++++.|++.+.. +++.+|..|+||||+|+. .|+.+++++|++. +.+ ++.
T Consensus 177 ~~~~~~~~~ll~~~~~--~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~ 253 (327)
T 1sw6_A 177 NYDSGTFEALLDYLYP--CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PND 253 (327)
T ss_dssp HHHTTCHHHHHHHHGG--GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------
T ss_pred cccHHHHHHHHHhhhc--cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-ccc
Confidence 6777777776532 277899999999999999 8999999999987 566 888
Q ss_pred cccCCCcHHHHHhc
Q 004346 226 VNENGLSPLHILAG 239 (760)
Q Consensus 226 ~d~~g~tpL~~A~~ 239 (760)
+|..|.||||+|+.
T Consensus 254 ~~~~g~t~L~~a~~ 267 (327)
T 1sw6_A 254 KNGERKDSILENLD 267 (327)
T ss_dssp ------CHHHHHCS
T ss_pred ccccCCChhHHHHH
Confidence 99999999999873
No 42
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=5.7e-31 Score=262.19 Aligned_cols=210 Identities=16% Similarity=0.108 Sum_probs=190.6
Q ss_pred cCCCCCchhhhhh-hccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCC
Q 004346 37 SNSLSTEDEEEKS-MQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENE 115 (760)
Q Consensus 37 ~~~~~~~~~~~~~-~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~ 115 (760)
..+++.+.+.... +..+.||||.|+..|+.+.++.+++. +.+++..|..|+||||+|+..|+.+++++|++.++..
T Consensus 8 ~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~- 84 (223)
T 2f8y_A 8 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD- 84 (223)
T ss_dssp ETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC-
T ss_pred HHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-
Confidence 3334444444333 56788999999999999999999988 7888889999999999999999999999999998633
Q ss_pred ccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCC
Q 004346 116 SNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSN 195 (760)
Q Consensus 116 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 195 (760)
++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..
T Consensus 85 ---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~ 157 (223)
T 2f8y_A 85 ---LDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNR 157 (223)
T ss_dssp ---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTT
T ss_pred ---cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCC
Confidence 788999999999999999999999999999999 899999999999999999999999999999877 7789999
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCch
Q 004346 196 GDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVD 264 (760)
Q Consensus 196 g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~ 264 (760)
|.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|++.++ .++++.|++.|+...
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~-------~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMH-------HDIVRLLDEYNLVRS 218 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCSSC
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcc-------hHHHHHHHHcCCCcc
Confidence 99999999999999999999999998 99999999999999999997 699999999998654
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=9.9e-31 Score=262.20 Aligned_cols=201 Identities=22% Similarity=0.218 Sum_probs=179.8
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHH
Q 004346 53 EIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHL 132 (760)
Q Consensus 53 ~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~ 132 (760)
+.||||.|+..|+.+.++.+++.. +.+++.+|..|+||||+||..|+.+++++|++.+++......+.+|..|+||||+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 578999999999999999998864 6778888999999999999999999999999998773222237788899999999
Q ss_pred HHHcCCHHHHHHHHhcCCCccCCCCC-------------CCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChH
Q 004346 133 AAALGNVEMCRCMASKDPKLVGARNK-------------DSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTI 199 (760)
Q Consensus 133 Aa~~g~~~~v~~Ll~~~~~~~~~~~~-------------~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~ 199 (760)
|+..|+.+++++|+++|++ ++.++. .|.||||+|+..|+.+++++|++.+++ ++.+|..|+||
T Consensus 82 A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~ 157 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD---IRAQDSLGNTV 157 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred HHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCH
Confidence 9999999999999999998 777765 799999999999999999999999887 88899999999
Q ss_pred HHHHHHcCCHHHH----HHHHHhCCCCc-----cccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchh
Q 004346 200 LHAAISGDYFSLA----FHIIRCYPDLV-----NCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDE 265 (760)
Q Consensus 200 Lh~A~~~~~~~iv----~~Ll~~~~~~~-----~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~ 265 (760)
||+|+..++.+++ ++|++.+++.. +.+|..|.||||+|+..|+ .++++.|+++|.....
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~-------~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN-------IVMFQHLMQKRKHIAA 225 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC-------HHHHHHHHHHHHHC--
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC-------HHHHHHHHhcCccchh
Confidence 9999999999988 99999998722 6899999999999999997 7999999999876544
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1.7e-30 Score=254.21 Aligned_cols=193 Identities=16% Similarity=0.153 Sum_probs=178.5
Q ss_pred ccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHH
Q 004346 51 QMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTAL 130 (760)
Q Consensus 51 ~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpL 130 (760)
+.+.++|+.|+..|+.+.++.++... +.+++..|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+|||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~l 76 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-----INLQNSISDSPY 76 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCCHH
Confidence 45679999999999999999999884 347788899999999999999999999999999988 889999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcC-CCCCCcccCCCCCChHHHHHHHcCC-
Q 004346 131 HLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLS-HDKDSSLGRKSNGDTILHAAISGDY- 208 (760)
Q Consensus 131 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~g~t~Lh~A~~~~~- 208 (760)
|+|+..|+.+++++|++.++..++.+|..|.||||+|+..|+.+++++|++.+ .+ ++.+|..|+||||+|+..++
T Consensus 77 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~g~t~L~~A~~~~~~ 153 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED---IDFQNDFGYTALIEAVGLREG 153 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC---TTCCCTTSCCHHHHHHHSSCC
T ss_pred HHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cCCCCCCCCCHHHHHHHhccc
Confidence 99999999999999996655449999999999999999999999999999998 54 77899999999999999998
Q ss_pred ----HHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcc
Q 004346 209 ----FSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDC 260 (760)
Q Consensus 209 ----~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~ 260 (760)
.+++++|++.+++ ++.+|..|.||||+|+..++ .++++.|+++|
T Consensus 154 ~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~-------~~~~~~Ll~~G 201 (201)
T 3hra_A 154 NQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGY-------TEISKILAQYN 201 (201)
T ss_dssp SHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC-------HHHHHHHHTCC
T ss_pred hhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCC-------HhHHHHHHhcC
Confidence 9999999999999 99999999999999999997 69999998765
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=3.6e-30 Score=251.91 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=110.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHH
Q 004346 85 TKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPL 164 (760)
Q Consensus 85 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 164 (760)
+..+.||||.|+..|+.+.++.|++.+..+ ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|.|||
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l 76 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ----VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPY 76 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence 356778888888888888888888776522 777788888888888888888888888888887 777888888888
Q ss_pred HHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCC
Q 004346 165 FLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKP 241 (760)
Q Consensus 165 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~ 241 (760)
|+|+..|+.+++++|++.+.. +++..+..|.||||+|+..|+.+++++|++.++..++.+|..|.||||+|+..+
T Consensus 77 ~~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 151 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKHATP--DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSS
T ss_pred HHHHHcCCHHHHHHHHhccCc--ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhc
Confidence 888888888888888744332 256677778888888888888888888887773335555555555555555443
No 46
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=2e-30 Score=244.84 Aligned_cols=157 Identities=28% Similarity=0.286 Sum_probs=149.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHH
Q 004346 54 IDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLA 133 (760)
Q Consensus 54 ~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~A 133 (760)
.++|+.||..|+.+.|+.||+. +++++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-----~~~~d~~g~TpLh~A 77 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-----VNAKDSDGRTPLHHA 77 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-----hhhhccCCCCHHHHH
Confidence 4689999999999999999998 889999999999999999999999999999999988 899999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHH
Q 004346 134 AALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAF 213 (760)
Q Consensus 134 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~ 213 (760)
+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|++.+++ ++.+|.+|+||||+|+..|+.++++
T Consensus 78 ~~~g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~g~~~iv~ 153 (169)
T 4gpm_A 78 AENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAREHGNEEVVK 153 (169)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999 999999999999999999999999999999887 7889999999999999999999999
Q ss_pred HHHHhCCC
Q 004346 214 HIIRCYPD 221 (760)
Q Consensus 214 ~Ll~~~~~ 221 (760)
+|+++|++
T Consensus 154 ~Ll~~GA~ 161 (169)
T 4gpm_A 154 LLEKQGGW 161 (169)
T ss_dssp HHHTC---
T ss_pred HHHHCCCC
Confidence 99999998
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3e-30 Score=243.67 Aligned_cols=159 Identities=29% Similarity=0.339 Sum_probs=148.4
Q ss_pred cHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHH
Q 004346 90 TALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAAL 169 (760)
Q Consensus 90 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 169 (760)
++|+.||+.|+.++|+.|++.|++ ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-----vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~ 79 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-----VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAE 79 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHH
Confidence 479999999999999999999998 899999999999999999999999999999999 89999999999999999
Q ss_pred cCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccch
Q 004346 170 NGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSC 249 (760)
Q Consensus 170 ~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~ 249 (760)
.|+.+++++|++.+++ ++.+|.+|+||||+|+..|+.+++++|++++++ ++.+|.+|.||||+|++.++
T Consensus 80 ~g~~~~v~~Ll~~gad---vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~------- 148 (169)
T 4gpm_A 80 NGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGN------- 148 (169)
T ss_dssp TTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------
T ss_pred cCCHHHHHHHHHCcCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCC-------
Confidence 9999999999999887 888999999999999999999999999999999 99999999999999999997
Q ss_pred hHHHHHHHhcccCchh
Q 004346 250 LGLFDLMLYDCVSVDE 265 (760)
Q Consensus 250 l~~~~~ll~~~~~~~~ 265 (760)
.++++.|+++|++++.
T Consensus 149 ~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 149 EEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHHHHTC------
T ss_pred HHHHHHHHHCCCCcCC
Confidence 6999999999999875
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=3.1e-31 Score=273.04 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=100.1
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccc----cccCCCChHHHHHHHc---CCHHHHHHHHhcCCCc
Q 004346 80 QEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILK----IQNNRGNTALHLAAAL---GNVEMCRCMASKDPKL 152 (760)
Q Consensus 80 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~----~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~ 152 (760)
..+..|..|+||||.||+.|+.++|+.|++.+.+.... ++ .+|..|+||||+|+.. |+.+++++|++.|++.
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKR-LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCC-TTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccc-cCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 34456788888888888888888888888765322111 22 4577888888888876 8888888888876541
Q ss_pred ----------cCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCC--------------CCChHHHHHHHcCC
Q 004346 153 ----------VGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKS--------------NGDTILHAAISGDY 208 (760)
Q Consensus 153 ----------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~--------------~g~t~Lh~A~~~~~ 208 (760)
...+|..|.||||+|+..|+.+++++|++.+++ ++.++. .|+||||+|+..|+
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~ 160 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD---VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cCccccccccccccccccccCCCCHHHHHHHcCC
Confidence 112455677777777777777777777776655 444444 46666666666666
Q ss_pred HHHHHHHHH---hCCCCccccccCCCcHHHHHhcCC
Q 004346 209 FSLAFHIIR---CYPDLVNCVNENGLSPLHILAGKP 241 (760)
Q Consensus 209 ~~iv~~Ll~---~~~~~~~~~d~~g~tpL~~A~~~~ 241 (760)
.+++++|++ .+++ ++.+|.+|+||||+|+..+
T Consensus 161 ~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~ 195 (273)
T 2pnn_A 161 LAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVA 195 (273)
T ss_dssp HHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHC
T ss_pred HHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHcc
Confidence 666666666 5555 5555555555555555443
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=7.3e-31 Score=267.47 Aligned_cols=142 Identities=16% Similarity=0.104 Sum_probs=95.4
Q ss_pred CCcHHHHHHHcCCHH----HHHHHHHhhCcCCcccccc----ccCCCChHHHHHHHc---CCHHHHHHHHhcCCCccCC-
Q 004346 88 EDTALHLAAASGHSD----VVCRLVETMGENESNILKI----QNNRGNTALHLAAAL---GNVEMCRCMASKDPKLVGA- 155 (760)
Q Consensus 88 g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~----~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~- 155 (760)
|+||||.||..|+.+ ++++|++.+.+ ++. +|..|+||||+|+.. |+.+++++|++.|++ ++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-----i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~-~~~~ 75 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKY-----LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD-SGNP 75 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-----TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH-TTCS
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCC-----cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc-ccch
Confidence 677777777777775 44555556665 555 677777777777777 777777777777665 331
Q ss_pred ----------CCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCC-------------CChHHHHHHHcCCHHHH
Q 004346 156 ----------RNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSN-------------GDTILHAAISGDYFSLA 212 (760)
Q Consensus 156 ----------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-------------g~t~Lh~A~~~~~~~iv 212 (760)
+|..|.||||+|+..|+.+++++|++.+++ ++.++.. |.||||+|+..|+.+++
T Consensus 76 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v 152 (256)
T 2etb_A 76 KPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD---VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152 (256)
T ss_dssp SCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHH
T ss_pred hhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence 235566777777777777777777666655 4444444 77777777777777777
Q ss_pred HHHHH---hCCCCccccccCCCcHHHHHhc
Q 004346 213 FHIIR---CYPDLVNCVNENGLSPLHILAG 239 (760)
Q Consensus 213 ~~Ll~---~~~~~~~~~d~~g~tpL~~A~~ 239 (760)
++|++ .+++ ++.+|.+|+||||+|+.
T Consensus 153 ~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~ 181 (256)
T 2etb_A 153 TYLLENPHQPAS-LEATDSLGNTVLHALVM 181 (256)
T ss_dssp HHHHHCSSCCCC-TTCCCTTSCCHHHHHHH
T ss_pred HHHHhccccCCC-cCccCCCCCCHHHHHHH
Confidence 77777 5655 66666666666666665
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=5.1e-30 Score=261.19 Aligned_cols=200 Identities=20% Similarity=0.229 Sum_probs=174.7
Q ss_pred cchHHHHHHHHcCCHHHHHHHH----HcCCCCcccc----cCCCCCcHHHHHHHc---CCHHHHHHHHHhhCcCCc--cc
Q 004346 52 MEIDNLFESAMRGHWDHIVQAY----ESNPMSQEAK----ITKSEDTALHLAAAS---GHSDVVCRLVETMGENES--NI 118 (760)
Q Consensus 52 ~~~~~L~~Aa~~g~~~~v~~lL----~~~~~~~~~~----~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~--~~ 118 (760)
++.||||.|+..|+.+.++.++ .. +.+++. .|..|+||||+||.. |+.+++++|++.|++... .+
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHc--CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 3679999999999998654444 45 667776 799999999999999 999999999999876311 01
Q ss_pred cc----cccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCC-------------CCcHHHHHHHcCChHHHHHHHh
Q 004346 119 LK----IQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKD-------------SETPLFLAALNGKKAAFLCLHF 181 (760)
Q Consensus 119 ~~----~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~~v~~Ll~ 181 (760)
++ .+|..|+||||+|+..|+.+++++|+++|++ ++.+|.. |.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11 3457899999999999999999999999999 8888886 9999999999999999999999
Q ss_pred ---cCCCCCCcccCCCCCChHHHHHHH--cCCHH-------HHHHHHHhCCCCc-------cccccCCCcHHHHHhcCCC
Q 004346 182 ---LSHDKDSSLGRKSNGDTILHAAIS--GDYFS-------LAFHIIRCYPDLV-------NCVNENGLSPLHILAGKPN 242 (760)
Q Consensus 182 ---~~~~~~~~~~~~~~g~t~Lh~A~~--~~~~~-------iv~~Ll~~~~~~~-------~~~d~~g~tpL~~A~~~~~ 242 (760)
.+++ ++.+|..|+||||+|+. .++.+ ++++|++.+++ + +.+|..|.||||+|+..|+
T Consensus 158 ~~~~ga~---~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~ 233 (256)
T 2etb_A 158 NPHQPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKEGK 233 (256)
T ss_dssp CSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred ccccCCC---cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC-cccccccccccCCCCCCHHHHHHHhCC
Confidence 6666 88899999999999999 88888 99999999998 7 8999999999999999997
Q ss_pred CCCccchhHHHHHHHhcccCchh
Q 004346 243 AFRSSSCLGLFDLMLYDCVSVDE 265 (760)
Q Consensus 243 ~~~s~~~l~~~~~ll~~~~~~~~ 265 (760)
.++++.|+++|.+...
T Consensus 234 -------~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 234 -------IEIFRHILQREFSGAA 249 (256)
T ss_dssp -------HHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHhCCCCCCC
Confidence 6999999999886554
No 51
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=9.3e-31 Score=263.19 Aligned_cols=201 Identities=21% Similarity=0.242 Sum_probs=180.2
Q ss_pred hhhccchHHHHHHHHcCCHHHHHHHHHcCC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCC
Q 004346 48 KSMQMEIDNLFESAMRGHWDHIVQAYESNP--MSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNR 125 (760)
Q Consensus 48 ~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~--~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~ 125 (760)
..++.+.||||.|+..|+.+.++.++.... +.+++..|..|+||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~ 77 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-----PELRDFR 77 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-----SCCCCTT
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCC
Confidence 345678899999999999998888887643 236788899999999999999999999999999988 8899999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCC-----ccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCC-CCChH
Q 004346 126 GNTALHLAAALGNVEMCRCMASKDPK-----LVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKS-NGDTI 199 (760)
Q Consensus 126 g~TpLh~Aa~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~g~t~ 199 (760)
|+||||+|+..|+.+++++|++.+++ .++..|..|.||||+|+..|+.+++++|++.+++ ++.++. .|+||
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~tp 154 (236)
T 1ikn_D 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTA 154 (236)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCCH
Confidence 99999999999999999999999864 2577889999999999999999999999999887 777887 99999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCch
Q 004346 200 LHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVD 264 (760)
Q Consensus 200 Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~ 264 (760)
||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++ .++++.|+.+|++..
T Consensus 155 L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~-------~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 155 LHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPS-------TRIQQQLGQLTLENL 211 (236)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSC-------HHHHHHHHTTSCGGG
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCc-------hHHHHHHHHcchhhh
Confidence 9999999999999999999999 99999999999999999987 699999999999765
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=7.4e-30 Score=262.70 Aligned_cols=206 Identities=22% Similarity=0.276 Sum_probs=174.4
Q ss_pred hhhhhhccchHHHHHHHHcCCHHHHHHHHHcC--CCCccc----ccCCCCCcHHHHHHHc---CCHHHHHHHHHhhCcCC
Q 004346 45 EEEKSMQMEIDNLFESAMRGHWDHIVQAYESN--PMSQEA----KITKSEDTALHLAAAS---GHSDVVCRLVETMGENE 115 (760)
Q Consensus 45 ~~~~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~--~~~~~~----~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~ 115 (760)
..+..+..+.|+||.||..|+.+.++.+++.. .+...+ ..|..|+||||+||.. |+.++|++|++.|++..
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~ 84 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD 84 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc
Confidence 34456677899999999999999999888741 133332 4588999999999987 99999999999986521
Q ss_pred c--cc----cccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCC--------------CCCcHHHHHHHcCChHH
Q 004346 116 S--NI----LKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNK--------------DSETPLFLAALNGKKAA 175 (760)
Q Consensus 116 ~--~~----~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~--------------~g~tpL~~A~~~g~~~~ 175 (760)
. .+ ...+|..|+||||+|+..|+.+++++|+++|++ ++.++. .|.||||+|+..|+.++
T Consensus 85 ~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp CHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred chhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 0 01 223677999999999999999999999999999 888887 79999999999999999
Q ss_pred HHHHHh---cCCCCCCcccCCCCCChHHHHHHHcCC---------HHHHHHHHHhCCCCcc-------ccccCCCcHHHH
Q 004346 176 FLCLHF---LSHDKDSSLGRKSNGDTILHAAISGDY---------FSLAFHIIRCYPDLVN-------CVNENGLSPLHI 236 (760)
Q Consensus 176 v~~Ll~---~~~~~~~~~~~~~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~~-------~~d~~g~tpL~~ 236 (760)
+++|++ .+++ ++.+|..|+||||+|+..|+ .+++++|++.+++ ++ .+|..|.||||+
T Consensus 164 v~~Ll~~~~~gad---~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~-~n~~~~~~~~~d~~g~TpL~~ 239 (273)
T 2pnn_A 164 VKFLLQNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK-LHPTLKLEEITNRKGLTPLAL 239 (273)
T ss_dssp HHHHHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHH
T ss_pred HHHHHhcccCCCC---ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh-cccccccccccCCCCCCHHHH
Confidence 999999 6666 88899999999999999988 8999999999988 64 589999999999
Q ss_pred HhcCCCCCCccchhHHHHHHHhcccC
Q 004346 237 LAGKPNAFRSSSCLGLFDLMLYDCVS 262 (760)
Q Consensus 237 A~~~~~~~~s~~~l~~~~~ll~~~~~ 262 (760)
|+..|+ .++++.|+++|+.
T Consensus 240 A~~~g~-------~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 240 AASSGK-------IGVLAYILQREIH 258 (273)
T ss_dssp HHHTTC-------HHHHHHHHHHHTC
T ss_pred HHHhCh-------HHHHHHHHHCCCC
Confidence 999997 6999999999993
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=1.2e-29 Score=259.07 Aligned_cols=201 Identities=22% Similarity=0.246 Sum_probs=174.3
Q ss_pred ccchHHHHHHHHcCCHHHHHHHHH----cCCCCccccc----CCCCCcHHHHHH---HcCCHHHHHHHHHhhCcCCc---
Q 004346 51 QMEIDNLFESAMRGHWDHIVQAYE----SNPMSQEAKI----TKSEDTALHLAA---ASGHSDVVCRLVETMGENES--- 116 (760)
Q Consensus 51 ~~~~~~L~~Aa~~g~~~~v~~lL~----~~~~~~~~~~----d~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~~~--- 116 (760)
..+.++||.|+..|+.+.++.+++ . +..++.. |..|+||||+|+ +.|+.+++++|++.+++...
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 457799999999999998777776 4 4444433 478999999999 77999999999999864211
Q ss_pred ---cccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCC--------------CCCCcHHHHHHHcCChHHHHHH
Q 004346 117 ---NILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARN--------------KDSETPLFLAALNGKKAAFLCL 179 (760)
Q Consensus 117 ---~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~~v~~L 179 (760)
..++.+|..|+||||+||..|+.++|++|+++|++ ++.++ ..|.||||+|+..|+.+++++|
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 12456677999999999999999999999999999 88888 6899999999999999999999
Q ss_pred Hh---cCCCCCCcccCCCCCChHHHHHHHcCC---------HHHHHHHHHhCCCCc-------cccccCCCcHHHHHhcC
Q 004346 180 HF---LSHDKDSSLGRKSNGDTILHAAISGDY---------FSLAFHIIRCYPDLV-------NCVNENGLSPLHILAGK 240 (760)
Q Consensus 180 l~---~~~~~~~~~~~~~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~-------~~~d~~g~tpL~~A~~~ 240 (760)
++ .+++ ++.+|..|+||||+|+..++ .+++++|++++++ + +.+|.+|.||||+|++.
T Consensus 160 l~~~~~ga~---~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~ 235 (260)
T 3jxi_A 160 TENGHKQAD---LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK-LFPDTNLEALLNNDGLSPLMMAAKT 235 (260)
T ss_dssp HHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HhccccCCC---CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc-cccccchhhcccCCCCCHHHHHHHc
Confidence 99 6665 88899999999999998887 7999999999988 6 67999999999999999
Q ss_pred CCCCCccchhHHHHHHHhcccCchh
Q 004346 241 PNAFRSSSCLGLFDLMLYDCVSVDE 265 (760)
Q Consensus 241 ~~~~~s~~~l~~~~~ll~~~~~~~~ 265 (760)
|+ .++++.|+++|.+...
T Consensus 236 g~-------~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 236 GK-------IGIFQHIIRREIADAA 253 (260)
T ss_dssp TC-------HHHHHHHHHHHHHHHC
T ss_pred CC-------HHHHHHHHHhCCCccc
Confidence 97 7999999999986554
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=2.8e-29 Score=256.39 Aligned_cols=63 Identities=13% Similarity=0.234 Sum_probs=57.9
Q ss_pred ccccCCCcHHHHHHhcCh---------HHHHHHHHHhCCccc-------cccccCCCchHHHHHHcCcHHHHHHHHhccc
Q 004346 447 QQSRRKETPLLIATKTGV---------LEIVEKILDAFPVAI-------QDEDANGKNVVLLAVEHRQTHIYELLLKKKM 510 (760)
Q Consensus 447 ~~d~~g~tpLh~Aa~~g~---------~eiv~~LL~~~~~~i-------~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~a 510 (760)
.+|..|+||||+||..|+ .+++++|++. |+++ +.+|..|+||||+|++.|+.+++++|+++|+
T Consensus 171 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 566789999999999887 7999999985 7888 7899999999999999999999999999997
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=9.7e-29 Score=254.33 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=92.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHH
Q 004346 87 SEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFL 166 (760)
Q Consensus 87 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~ 166 (760)
.+++++|.|+..|+.+.++.+++.+.+ ..++.+|..|+||||+||..|+.+++++|++.|+..++.+|..|.||||+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~---~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~ 151 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLD---YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML 151 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHH---HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHh---hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHH
Confidence 456677888888888888888776543 22677888888888888888888888888888874478888888888888
Q ss_pred HH-----HcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCC
Q 004346 167 AA-----LNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPD 221 (760)
Q Consensus 167 A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 221 (760)
|+ ..++.+++++|++.+.. .+..+..|+||||+|+..|+.+++++|++.+++
T Consensus 152 a~~~~~~~~~~~~~v~~Ll~~g~~---~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad 208 (276)
T 4hbd_A 152 TALATLKTQDDIETVLQLFRLGNI---NAKASQAGQTALMLAVSHGRVDVVKALLACEAD 208 (276)
T ss_dssp GGGCCCCSHHHHHHHHHHHHHSCT---TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHhhhhhhHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 87 44666666766666644 444566666666666666666666666665554
No 56
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=2.6e-30 Score=275.60 Aligned_cols=182 Identities=15% Similarity=0.107 Sum_probs=145.8
Q ss_pred chHHHHHHHH-cCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHH
Q 004346 53 EIDNLFESAM-RGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALH 131 (760)
Q Consensus 53 ~~~~L~~Aa~-~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh 131 (760)
+.+.++.++. .++.+.++.++.. +.+++||||+||+.|+.++|++|++.|+.. ...+..|..|.||||
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~---------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~--~~~~~~~~~~~tpL~ 133 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKK---------GIKSEVICFVAAITGCSSALDTLCLLLTSD--EIVKVIQAENYQAFR 133 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHH---------TCCHHHHHHHHHHHCCHHHHHHHTTC--CC--SSCC--CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHc---------CCCcCCHHHHHHHcCCHHHHHHHHHcCCcH--HHHHHhccCCCCHHH
Confidence 3456777666 4666666666655 335569999999999999999999998632 112345667899999
Q ss_pred HHHHcCCHHHHHHHHhcCCC----ccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCccc--CCCCCChHHHHHH-
Q 004346 132 LAAALGNVEMCRCMASKDPK----LVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLG--RKSNGDTILHAAI- 204 (760)
Q Consensus 132 ~Aa~~g~~~~v~~Ll~~~~~----~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~~~~g~t~Lh~A~- 204 (760)
+||..|+.++|++|+++|++ .++.++ .||||+|+.+|+.+++++|++.+++ ++. .|..|.||||+|+
T Consensus 134 ~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~---~~~~~~d~~g~TpL~~Aa~ 207 (376)
T 2aja_A 134 LAAENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPT---EATAMIQAENYYAFRWAAV 207 (376)
T ss_dssp HHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGG---GHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCc---cchhccCCCCCCHHHHHHH
Confidence 99999999999999999974 133333 9999999999999999999999876 555 7888999999999
Q ss_pred HcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccCchhh
Q 004346 205 SGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVSVDEL 266 (760)
Q Consensus 205 ~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~~~~~ 266 (760)
.+|+.+++++|++.++ .|.||||+|+..|+ .+++++|+.+|++++..
T Consensus 208 ~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~-------~evv~lL~~~ga~~~~~ 254 (376)
T 2aja_A 208 GRGHHNVINFLLDCPV--------MLAYAEIHEFEYGE-------KYVNPFIARHVNRLKEM 254 (376)
T ss_dssp TTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTT-------TTHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCC--------ccchHHHHHHHCCC-------HHHHHHHHhcCcccccc
Confidence 9999999999998552 38999999999997 58999999999877653
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=9.8e-28 Score=232.78 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=151.6
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCC
Q 004346 80 QEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKD 159 (760)
Q Consensus 80 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~ 159 (760)
..+.+|..|+||||+||..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 100 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-----LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFS 100 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTT
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-----cccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCC
Confidence 4566789999999999999999999999999887 888999999999999999999999999999998 8999999
Q ss_pred CCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhc
Q 004346 160 SETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAG 239 (760)
Q Consensus 160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~ 239 (760)
|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+.
T Consensus 101 g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~ 176 (192)
T 2rfm_A 101 GKTPLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARI 176 (192)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence 99999999999999999999999877 778899999999999999999999999999998 99999999999999999
Q ss_pred CCCCCCccchhHHHHHHHhcc
Q 004346 240 KPNAFRSSSCLGLFDLMLYDC 260 (760)
Q Consensus 240 ~~~~~~s~~~l~~~~~ll~~~ 260 (760)
.++ .++++.|++.+
T Consensus 177 ~~~-------~~~v~~Ll~~~ 190 (192)
T 2rfm_A 177 FGR-------QEVIKIFTEVR 190 (192)
T ss_dssp TTC-------HHHHHHHHHHH
T ss_pred hCc-------HHHHHHHHhcc
Confidence 987 68999988764
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=7.7e-28 Score=229.02 Aligned_cols=170 Identities=19% Similarity=0.153 Sum_probs=152.0
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHH
Q 004346 53 EIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHL 132 (760)
Q Consensus 53 ~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~ 132 (760)
+.+||+.|+..|+.+.++.++... ...++..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~ 75 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-----PHILAKERESALSL 75 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----TTCCCTTCCCHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----chhhcccCCCHHHH
Confidence 347899999999999999999884 233778899999999999999999999999999988 88999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHH
Q 004346 133 AAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212 (760)
Q Consensus 133 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv 212 (760)
|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~ 151 (172)
T 3v30_A 76 ASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYRKVQ 151 (172)
T ss_dssp HHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHhCcHHHH
Confidence 9999999999999999999 899999999999999999999999999999877 778999999999999999999999
Q ss_pred HHHHHhCCCCccccccCCCcH
Q 004346 213 FHIIRCYPDLVNCVNENGLSP 233 (760)
Q Consensus 213 ~~Ll~~~~~~~~~~d~~g~tp 233 (760)
++|++++++ ....+..|.||
T Consensus 152 ~~L~~~~~~-~~~~~~~~~~p 171 (172)
T 3v30_A 152 QVIENHILK-LFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHHH-HSCC-------
T ss_pred HHHHHHHHH-HhcccCCCCCC
Confidence 999999998 78888888887
No 59
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=2.7e-28 Score=251.01 Aligned_cols=191 Identities=16% Similarity=0.129 Sum_probs=173.7
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHH
Q 004346 54 IDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLA 133 (760)
Q Consensus 54 ~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~A 133 (760)
.++++.|+..|+.+.++.++.......++..|.+|+||||+||..|+.++|++|++.|+.+ ++.+|..|.||||+|
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~----~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK----VDKQNRAGYSPIMLT 152 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC----TTCCCTTSCCHHHHG
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc----CCCCCCCCCCHHHHH
Confidence 4566788889999999888877434447888999999999999999999999999999732 889999999999999
Q ss_pred H-----HcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCC
Q 004346 134 A-----ALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDY 208 (760)
Q Consensus 134 a-----~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~ 208 (760)
+ ..++.+++++|++.|.. .+..|..|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad---~n~~d~~G~TpLh~A~~~g~ 228 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEAD---VNVQDDDGSTALMCACEHGH 228 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHCCC
Confidence 9 66899999999999987 788999999999999999999999999999887 88899999999999999999
Q ss_pred HHHHHHHHH-hCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcc
Q 004346 209 FSLAFHIIR-CYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDC 260 (760)
Q Consensus 209 ~~iv~~Ll~-~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~ 260 (760)
.+++++|++ .+++ ++.+|.+|.||||+|+..|+ .++++.|+++.
T Consensus 229 ~~iv~~Ll~~~gad-~~~~d~~g~TpL~~A~~~g~-------~~iv~~Ll~~~ 273 (276)
T 4hbd_A 229 KEIAGLLLAVPSCD-ISLTDRDGSTALMVALDAGQ-------SEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHHHTC-------HHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCC-CcCcCCCCCCHHHHHHHcCC-------HHHHHHHHhcc
Confidence 999999999 7777 99999999999999999997 69999998764
No 60
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=4.2e-27 Score=222.75 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=122.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHH
Q 004346 87 SEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFL 166 (760)
Q Consensus 87 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~ 166 (760)
.|.||||.|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|.||||+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 75 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-----INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSL 75 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-----cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHH
Confidence 467788888888888888888777665 677777788888888888888888888877777 77777777888888
Q ss_pred HHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCc
Q 004346 167 AALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRS 246 (760)
Q Consensus 167 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s 246 (760)
|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~---- 147 (167)
T 3v31_A 76 ACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGY---- 147 (167)
T ss_dssp HHHHTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHCCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCc----
Confidence 8888888888888777666 666777778888888888888888888877777 77777778888888877776
Q ss_pred cchhHHHHHHHhcccC
Q 004346 247 SSCLGLFDLMLYDCVS 262 (760)
Q Consensus 247 ~~~l~~~~~ll~~~~~ 262 (760)
.++++.|++++.+
T Consensus 148 ---~~~~~~L~~~~~~ 160 (167)
T 3v31_A 148 ---RSVQQVIESHLLK 160 (167)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH
Confidence 5777777766654
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=2.5e-27 Score=223.05 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=99.0
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHH
Q 004346 53 EIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHL 132 (760)
Q Consensus 53 ~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~ 132 (760)
..++|+.|+..|+.+.++.+++. +.+++..|..|+||||+|+. |+.+++++|++.|++ ++.+|..|+||||+
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~ 76 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-----PDLKDRTGFAVIHD 76 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-----TTCCCTTSCCHHHH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-----CCCCCCCCCCHHHH
Confidence 34666666666666666666654 45556666666666666666 666666666666655 55666666666666
Q ss_pred HHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHH
Q 004346 133 AAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212 (760)
Q Consensus 133 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv 212 (760)
|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.+++. ++.++..|.||||+|+..|+.+++
T Consensus 77 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~g~t~l~~A~~~~~~~~~ 153 (162)
T 1ihb_A 77 AARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYGRNEVV 153 (162)
T ss_dssp HHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC--CCCcCCCCCcHHHHHHHcCCHHHH
Confidence 6666666666666666665 5666666666666666666666666666665542 345566666666666666666666
Q ss_pred HHHHHhCC
Q 004346 213 FHIIRCYP 220 (760)
Q Consensus 213 ~~Ll~~~~ 220 (760)
++|+++|+
T Consensus 154 ~~Ll~~GA 161 (162)
T 1ihb_A 154 SLMQANGA 161 (162)
T ss_dssp HHHHHTC-
T ss_pred HHHHHhCC
Confidence 66666654
No 62
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.8e-29 Score=248.69 Aligned_cols=112 Identities=16% Similarity=0.081 Sum_probs=74.1
Q ss_pred HHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcC
Q 004346 104 VCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLS 183 (760)
Q Consensus 104 v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 183 (760)
++.|++.+++.. ..+..+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++.+
T Consensus 1 v~~ll~~~~~~~--~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 77 (229)
T 2vge_A 1 MRSVLRKAGSPR--KARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAG 77 (229)
T ss_dssp ---------CCC--CCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CeehhccCCCCc--cccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 355666665421 1344556677777777777777777777777776 7777777777777777777777777777776
Q ss_pred CCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCC
Q 004346 184 HDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPD 221 (760)
Q Consensus 184 ~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 221 (760)
++ ++.+|..|+||||+|+..|+.+++++|++.+++
T Consensus 78 a~---~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 112 (229)
T 2vge_A 78 AN---VNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112 (229)
T ss_dssp CC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred CC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 65 666777777777777777777777777766655
No 63
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=6.2e-27 Score=220.31 Aligned_cols=148 Identities=19% Similarity=0.177 Sum_probs=139.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHH
Q 004346 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLF 165 (760)
Q Consensus 86 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 165 (760)
....||||.|+..|+.+++++|++.+.+ ++.+|..|+||||+|+. |+.+++++|++.|++ ++.+|..|.||||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~ 75 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVN-----VNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIH 75 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCC-----TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCC-----ccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHH
Confidence 3567999999999999999999999877 88999999999999999 999999999999998 8999999999999
Q ss_pred HHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCC
Q 004346 166 LAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNA 243 (760)
Q Consensus 166 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~ 243 (760)
+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++++++.++.+|..|.||||+|+..++.
T Consensus 76 ~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~ 150 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150 (162)
T ss_dssp HHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 99999999999999999877 7789999999999999999999999999999986799999999999999999873
No 64
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.2e-26 Score=220.06 Aligned_cols=155 Identities=26% Similarity=0.282 Sum_probs=87.8
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHH
Q 004346 53 EIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHL 132 (760)
Q Consensus 53 ~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~ 132 (760)
..++|+.||..|+.+.++.+++. +.+++..|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-----VNAVDHAGMTPLRL 86 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHH
T ss_pred ccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCCHHHH
Confidence 44555555555555555555555 445555555555555555555555555555555544 45555555555555
Q ss_pred HHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHH
Q 004346 133 AAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212 (760)
Q Consensus 133 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv 212 (760)
|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++
T Consensus 87 A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~ 162 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNEDLA 162 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCHHHH
Confidence 5555555555555555555 555555555555555555555555555555544 444555555555555555555555
Q ss_pred HHHHHh
Q 004346 213 FHIIRC 218 (760)
Q Consensus 213 ~~Ll~~ 218 (760)
++|++.
T Consensus 163 ~~L~~~ 168 (169)
T 2y1l_E 163 EILQKL 168 (169)
T ss_dssp HHHHTC
T ss_pred HHHHHc
Confidence 555543
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.9e-26 Score=218.69 Aligned_cols=148 Identities=26% Similarity=0.270 Sum_probs=140.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHH
Q 004346 85 TKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPL 164 (760)
Q Consensus 85 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 164 (760)
...+.|+||.||+.|+.++|++|++.|.+ ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|.|||
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L 84 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGAD-----VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPL 84 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHH
Confidence 55778999999999999999999999987 889999999999999999999999999999998 899999999999
Q ss_pred HHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCC
Q 004346 165 FLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPN 242 (760)
Q Consensus 165 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~ 242 (760)
|+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..++
T Consensus 85 ~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~ 158 (169)
T 2y1l_E 85 RLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGN 158 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCC
Confidence 999999999999999999887 778999999999999999999999999999999 99999999999999999886
No 66
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=7.2e-27 Score=222.29 Aligned_cols=162 Identities=19% Similarity=0.184 Sum_probs=151.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHH
Q 004346 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLA 167 (760)
Q Consensus 88 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A 167 (760)
+.||||.||..|+.++++.|++.+... ++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 76 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNL----VNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLA 76 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGG----GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCccc----ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHH
Confidence 578999999999999999999987653 788999999999999999999999999999999 899999999999999
Q ss_pred HHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCcc
Q 004346 168 ALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSS 247 (760)
Q Consensus 168 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~ 247 (760)
+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++
T Consensus 77 ~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~----- 147 (172)
T 3v30_A 77 STGGYTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGY----- 147 (172)
T ss_dssp HHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC-----
T ss_pred HHCCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCc-----
Confidence 999999999999999887 778999999999999999999999999999999 99999999999999999997
Q ss_pred chhHHHHHHHhcccCchh
Q 004346 248 SCLGLFDLMLYDCVSVDE 265 (760)
Q Consensus 248 ~~l~~~~~ll~~~~~~~~ 265 (760)
.++++.|++++++...
T Consensus 148 --~~~~~~L~~~~~~~~~ 163 (172)
T 3v30_A 148 --RKVQQVIENHILKLFQ 163 (172)
T ss_dssp --HHHHHHHHHHHHHHSC
T ss_pred --HHHHHHHHHHHHHHhc
Confidence 6999999999887654
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=1.2e-26 Score=219.67 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=150.3
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHH
Q 004346 53 EIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHL 132 (760)
Q Consensus 53 ~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~ 132 (760)
+.||||.|+..|+.+.++.+++. +.+++..|..|+||||+|+..|+.+++++|++.|++ ++.+|..|.||||+
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~ 75 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-----PQLLGKGRESALSL 75 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHH
T ss_pred CcchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-----CCCcCCCCCcHHHH
Confidence 56899999999999999999998 677888999999999999999999999999999887 88899999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHH
Q 004346 133 AAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212 (760)
Q Consensus 133 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv 212 (760)
|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~ 151 (167)
T 3v31_A 76 ACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGYRSVQ 151 (167)
T ss_dssp HHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHH
Confidence 9999999999999999999 899999999999999999999999999999887 778999999999999999999999
Q ss_pred HHHHHhCCC
Q 004346 213 FHIIRCYPD 221 (760)
Q Consensus 213 ~~Ll~~~~~ 221 (760)
++|++++.+
T Consensus 152 ~~L~~~~~~ 160 (167)
T 3v31_A 152 QVIESHLLK 160 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 68
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.7e-29 Score=252.03 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=137.3
Q ss_pred HHHHHcCCCCcc---cccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHH
Q 004346 70 VQAYESNPMSQE---AKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMA 146 (760)
Q Consensus 70 ~~lL~~~~~~~~---~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll 146 (760)
+.+|+. +.++ +..+.+|.||||+||..|+.++|++|++.|++ ++.+|..|+||||+||..|+.+++++|+
T Consensus 2 ~~ll~~--~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll 74 (229)
T 2vge_A 2 RSVLRK--AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-----PSQPNEEGITALHNAICGANYSIVDFLI 74 (229)
T ss_dssp ----------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred eehhcc--CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 455665 3333 33456788899999999999999999999987 8899999999999999999999999999
Q ss_pred hcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCC-CCCChHHHHH--HHcCCHHHHHHHHHhCCCCc
Q 004346 147 SKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRK-SNGDTILHAA--ISGDYFSLAFHIIRCYPDLV 223 (760)
Q Consensus 147 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~iv~~Ll~~~~~~~ 223 (760)
+.|++ ++.+|..|+||||+|+..|+.+++++|++.+++ ++.++ ..|+||||+| +..|+.+++++|++.+++ +
T Consensus 75 ~~ga~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~ 149 (229)
T 2vge_A 75 TAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAA---IFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-M 149 (229)
T ss_dssp HTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-T
T ss_pred HCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-c
Confidence 99999 999999999999999999999999999999887 66665 6999999999 999999999999999998 8
Q ss_pred cccccCCCcHHHHHhcC
Q 004346 224 NCVNENGLSPLHILAGK 240 (760)
Q Consensus 224 ~~~d~~g~tpL~~A~~~ 240 (760)
+..|..|.||++.++..
T Consensus 150 ~~~~~~~~~~l~~~~~~ 166 (229)
T 2vge_A 150 GLMNSGAVYALWDYSAE 166 (229)
T ss_dssp TTSGGGEEEESSCBCCS
T ss_pred ccccCCchHHHHHHhhc
Confidence 99999999998866544
No 69
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=6.2e-27 Score=227.12 Aligned_cols=163 Identities=20% Similarity=0.163 Sum_probs=153.2
Q ss_pred hhhhhccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCC
Q 004346 46 EEKSMQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNR 125 (760)
Q Consensus 46 ~~~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~ 125 (760)
.+..+..+.||||.|+..|+.+.++.+++. +.+++..|..|+||||+|+..|+.+++++|++.|++ ++.+|..
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~ 100 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-----VNTKDFS 100 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----TTCCCTT
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCC
Confidence 344566788999999999999999999998 677888899999999999999999999999999987 8899999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHH
Q 004346 126 GNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAIS 205 (760)
Q Consensus 126 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~ 205 (760)
|+||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+.
T Consensus 101 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~ 176 (192)
T 2rfm_A 101 GKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEASARI 176 (192)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHH
Confidence 99999999999999999999999999 899999999999999999999999999999887 77899999999999999
Q ss_pred cCCHHHHHHHHHhC
Q 004346 206 GDYFSLAFHIIRCY 219 (760)
Q Consensus 206 ~~~~~iv~~Ll~~~ 219 (760)
.|+.+++++|++.+
T Consensus 177 ~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 177 FGRQEVIKIFTEVR 190 (192)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hCcHHHHHHHHhcc
Confidence 99999999999864
No 70
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=5.1e-29 Score=265.59 Aligned_cols=174 Identities=16% Similarity=0.050 Sum_probs=141.3
Q ss_pred hccchHHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCCh
Q 004346 50 MQMEIDNLFESAMRGHWDHIVQAYESNPM-SQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNT 128 (760)
Q Consensus 50 ~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~-~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~T 128 (760)
.....||||.||..|+.+.++.+++.... ...+..+..|.||||+||..|+.++|++|+++|++.....++.++ .|
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~T 165 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YH 165 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CC
Confidence 33456999999999999999999887321 112234567899999999999999999999998641100133333 99
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccCC--CCCCCCcHHHHHH-HcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHH
Q 004346 129 ALHLAAALGNVEMCRCMASKDPKLVGA--RNKDSETPLFLAA-LNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAIS 205 (760)
Q Consensus 129 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~--~~~~g~tpL~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~ 205 (760)
|||+||..|+.++|++|+++|++ ++. .|..|.||||+|+ .+|+.+++++|++.++ .|.||||.|+.
T Consensus 166 pLh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga----------~~~taL~~Aa~ 234 (376)
T 2aja_A 166 AFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV----------MLAYAEIHEFE 234 (376)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH----------HHHHHHHCTTT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC----------ccchHHHHHHH
Confidence 99999999999999999999998 666 8888999999999 9999999999988542 28899999999
Q ss_pred cCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCC
Q 004346 206 GDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPN 242 (760)
Q Consensus 206 ~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~ 242 (760)
+|+.+++++|++.+++ ++..+ ++++.|+..|+
T Consensus 235 ~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g~ 266 (376)
T 2aja_A 235 YGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDGV 266 (376)
T ss_dssp TTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSSC
T ss_pred CCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCCC
Confidence 9999999999999887 55544 47888888876
No 71
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=3.9e-26 Score=213.39 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=144.9
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHH
Q 004346 53 EIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHL 132 (760)
Q Consensus 53 ~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~ 132 (760)
+.++|+.|+..|+.+.++.+++. .+.+++..|..|+||||+ |..|+.+++++|++.|++ ++.+|..|+||||+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~ 74 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-----PNVQDTSGTSPVHD 74 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-----CCCcCCCCCCHHHH
Confidence 46899999999999999999998 566788889999999999 999999999999999988 88999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHH
Q 004346 133 AAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLA 212 (760)
Q Consensus 133 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv 212 (760)
|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++. .+ ++.+|..|.||||+|+..|+.+++
T Consensus 75 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~~~~~~~v 149 (156)
T 1bd8_A 75 AARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQRGAQDLV 149 (156)
T ss_dssp HHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred HHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHHcCcHHHH
Confidence 9999999999999999998 899999999999999999999999999988 55 778999999999999999999999
Q ss_pred HHHHHh
Q 004346 213 FHIIRC 218 (760)
Q Consensus 213 ~~Ll~~ 218 (760)
++|+++
T Consensus 150 ~~Ll~~ 155 (156)
T 1bd8_A 150 DILQGH 155 (156)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 999874
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=8.4e-26 Score=210.37 Aligned_cols=150 Identities=20% Similarity=0.159 Sum_probs=135.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHH
Q 004346 54 IDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLA 133 (760)
Q Consensus 54 ~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~A 133 (760)
.++|+.|+..|+.+.++.+++. +.+.+ .+..|.||||+|+..|+.+++++|++.|.+ ++.+|..|+||||+|
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~--g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A 74 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMAN--GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-----RDARTKVDRTPLHMA 74 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH--TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----TTCCCTTCCCHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHc--CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHH
Confidence 5789999999999999999988 44444 488899999999999999999999999877 788999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHH
Q 004346 134 AALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAF 213 (760)
Q Consensus 134 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~ 213 (760)
+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.++++
T Consensus 75 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~ 150 (153)
T 1awc_B 75 ASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAE 150 (153)
T ss_dssp HHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999998 899999999999999999999999999999877 7778999999999999999999998
Q ss_pred HH
Q 004346 214 HI 215 (760)
Q Consensus 214 ~L 215 (760)
+|
T Consensus 151 ~L 152 (153)
T 1awc_B 151 IL 152 (153)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=5e-26 Score=211.88 Aligned_cols=151 Identities=23% Similarity=0.212 Sum_probs=141.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHH
Q 004346 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLA 167 (760)
Q Consensus 88 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A 167 (760)
+.||||.|++.|+.+++++|++.|.+ ++ .|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~-----~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 74 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAP-----FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMA 74 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCC-----CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCC-----CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHH
Confidence 46899999999999999999999876 43 688999999999999999999999999999 899999999999999
Q ss_pred HHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCcc
Q 004346 168 ALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSS 247 (760)
Q Consensus 168 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~ 247 (760)
+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..++
T Consensus 75 ~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~----- 145 (153)
T 1awc_B 75 ASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGN----- 145 (153)
T ss_dssp HHHTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-----
T ss_pred HHcChHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCC-----
Confidence 999999999999999877 778999999999999999999999999999998 99999999999999999997
Q ss_pred chhHHHHHH
Q 004346 248 SCLGLFDLM 256 (760)
Q Consensus 248 ~~l~~~~~l 256 (760)
.++++.|
T Consensus 146 --~~i~~~L 152 (153)
T 1awc_B 146 --EDLAEIL 152 (153)
T ss_dssp --HHHHHHH
T ss_pred --HHHHHHh
Confidence 5777665
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=2.1e-26 Score=217.49 Aligned_cols=160 Identities=22% Similarity=0.212 Sum_probs=96.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHH
Q 004346 85 TKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPL 164 (760)
Q Consensus 85 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 164 (760)
|..|.||||.|++.|+.++++.|++.+... ++..+..|+||||+|+..|+.+++++|+++|++ ++.+|..|.|||
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L 79 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVN----CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPL 79 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTT----CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCC----ccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHH
Confidence 445566666666666666666666543221 445555666666666666666666666666665 566666666666
Q ss_pred HHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCC
Q 004346 165 FLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAF 244 (760)
Q Consensus 165 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 244 (760)
|+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.+++ ++.+|.+|.||||+|+. ++
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~-- 152 (165)
T 3twr_A 80 HNACSYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GD-- 152 (165)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TC--
T ss_pred HHHHHcCcHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CC--
Confidence 666666666666666666555 555566666666666666666666666666665 66666666666666554 33
Q ss_pred CccchhHHHHHHHhccc
Q 004346 245 RSSSCLGLFDLMLYDCV 261 (760)
Q Consensus 245 ~s~~~l~~~~~ll~~~~ 261 (760)
.++++.|+..|+
T Consensus 153 -----~~i~~~L~~~gA 164 (165)
T 3twr_A 153 -----TDIQDLLRGDAA 164 (165)
T ss_dssp -----HHHHHHHHTC--
T ss_pred -----hHHHHHHhhccc
Confidence 366666655543
No 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=2.5e-26 Score=220.14 Aligned_cols=168 Identities=18% Similarity=0.147 Sum_probs=153.9
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHH
Q 004346 52 MEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALH 131 (760)
Q Consensus 52 ~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh 131 (760)
...++|+.|+..|+.+.++.+++.. +.+++..|..|+||||+||..|+.+++++|++.|++ ++.+|..|+||||
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~ 77 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-----INVMNRGDDTPLH 77 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-----CCCcCCCCCCHHH
Confidence 4567899999999999999999875 456788899999999999999999999999999988 8899999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHH
Q 004346 132 LAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSL 211 (760)
Q Consensus 132 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~i 211 (760)
+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++.++
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~ 153 (179)
T 3f6q_A 78 LAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKAKAPLRELL 153 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SSBCCTTSCCGGGGSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cchhccCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999 899999999999999999999999999999887 78899999999999999999999
Q ss_pred HHHHHHhCCCCccccccCC
Q 004346 212 AFHIIRCYPDLVNCVNENG 230 (760)
Q Consensus 212 v~~Ll~~~~~~~~~~d~~g 230 (760)
+++|++.+++ ++..+..+
T Consensus 154 ~~~L~~~g~~-~~~~~~~~ 171 (179)
T 3f6q_A 154 RERAEKMGQN-LNRIPYKD 171 (179)
T ss_dssp HHHHHHTTCC-CSCBCCCC
T ss_pred HHHHHHhhcC-cccCCccc
Confidence 9999999998 66555443
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=3.4e-26 Score=219.18 Aligned_cols=164 Identities=17% Similarity=0.157 Sum_probs=151.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHH
Q 004346 86 KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLF 165 (760)
Q Consensus 86 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 165 (760)
..+.++||.||..|+.+++++|++.+..+ ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|.||||
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~ 77 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTEND----LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLH 77 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccc----ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHH
Confidence 46889999999999999999999985443 789999999999999999999999999999999 8999999999999
Q ss_pred HHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCC
Q 004346 166 LAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFR 245 (760)
Q Consensus 166 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~ 245 (760)
+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..++
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~--- 150 (179)
T 3f6q_A 78 LAASHGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLR--- 150 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHH---
T ss_pred HHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHH---
Confidence 99999999999999999887 788999999999999999999999999999999 99999999999999998775
Q ss_pred ccchhHHHHHHHhcccCchh
Q 004346 246 SSSCLGLFDLMLYDCVSVDE 265 (760)
Q Consensus 246 s~~~l~~~~~ll~~~~~~~~ 265 (760)
.++++.|+..|++++.
T Consensus 151 ----~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 151 ----ELLRERAEKMGQNLNR 166 (179)
T ss_dssp ----HHHHHHHHHTTCCCSC
T ss_pred ----HHHHHHHHHhhcCccc
Confidence 6999999999998876
No 77
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=3.3e-26 Score=216.07 Aligned_cols=160 Identities=20% Similarity=0.183 Sum_probs=146.2
Q ss_pred hccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChH
Q 004346 50 MQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTA 129 (760)
Q Consensus 50 ~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~Tp 129 (760)
++.+.++|+.|+..|+.+.++.+++.. +...+..+..|+||||+|+..|+.+++++|+++|.+ ++.+|..|+||
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~ 78 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-----VHAKDKGGLVP 78 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-----CCccCCCCCCH
Confidence 445679999999999999999998864 456667788999999999999999999999999988 88999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCH
Q 004346 130 LHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYF 209 (760)
Q Consensus 130 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~ 209 (760)
||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+. ++.
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~a~~-~~~ 153 (165)
T 3twr_A 79 LHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDLVKD-GDT 153 (165)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTGGGSCT-TCH
T ss_pred HHHHHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCChhHhHhc-CCh
Confidence 9999999999999999999999 899999999999999999999999999999877 78899999999999877 899
Q ss_pred HHHHHHHHhCC
Q 004346 210 SLAFHIIRCYP 220 (760)
Q Consensus 210 ~iv~~Ll~~~~ 220 (760)
+++++|+++++
T Consensus 154 ~i~~~L~~~gA 164 (165)
T 3twr_A 154 DIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHhhccc
Confidence 99999998764
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=1.5e-25 Score=209.37 Aligned_cols=154 Identities=19% Similarity=0.212 Sum_probs=142.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHH
Q 004346 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLA 167 (760)
Q Consensus 88 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A 167 (760)
|.||||.|+..|+.+++++|++....+ ++.+|..|+||||+ +..|+.+++++|++.|++ ++.+|..|.||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~----~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 75 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVH----PDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDA 75 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCC----TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcC----ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHH
Confidence 568999999999999999999982111 78899999999999 999999999999999999 899999999999999
Q ss_pred HHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCcc
Q 004346 168 ALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSS 247 (760)
Q Consensus 168 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~ 247 (760)
+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++. ++ ++.+|.+|.||||+|+..++
T Consensus 76 ~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~----- 145 (156)
T 1bd8_A 76 ARTGFLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGA----- 145 (156)
T ss_dssp HHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCC-----
T ss_pred HHcCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCc-----
Confidence 999999999999999877 788999999999999999999999999998 76 99999999999999999997
Q ss_pred chhHHHHHHHhc
Q 004346 248 SCLGLFDLMLYD 259 (760)
Q Consensus 248 ~~l~~~~~ll~~ 259 (760)
.++++.|+++
T Consensus 146 --~~~v~~Ll~~ 155 (156)
T 1bd8_A 146 --QDLVDILQGH 155 (156)
T ss_dssp --HHHHHHHHTT
T ss_pred --HHHHHHHHhh
Confidence 6899988753
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=5.7e-26 Score=228.47 Aligned_cols=178 Identities=15% Similarity=0.079 Sum_probs=134.0
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHH
Q 004346 52 MEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALH 131 (760)
Q Consensus 52 ~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh 131 (760)
.+.|||+.|+..|+.+.+..+++. +.+++. +..|.||||.|+..|+.++|++|++.|++ ++.+|..|+||||
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~d~~g~t~L~ 75 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-----PSLPNDEGITALH 75 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-----CCCCCTTSCCHHH
T ss_pred cccccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHH
Confidence 467999999999999999999988 666665 57899999999999999999999999987 8999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCC-hHHHHH--HHcCC
Q 004346 132 LAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGD-TILHAA--ISGDY 208 (760)
Q Consensus 132 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~-t~Lh~A--~~~~~ 208 (760)
+||..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++.+++ ++.++..|. ||||+| +..|+
T Consensus 76 ~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~t~l~~a~~~~~g~ 151 (239)
T 1ycs_B 76 NAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGY 151 (239)
T ss_dssp HHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTC
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cceecCCCCcchHHHHHHhhhcc
Confidence 99999999999999999999 899999999999999999999999999999888 677787776 999999 88899
Q ss_pred HHHHHHHHHhCCCCcccc---------ccCCCcHHHHHhcCCC
Q 004346 209 FSLAFHIIRCYPDLVNCV---------NENGLSPLHILAGKPN 242 (760)
Q Consensus 209 ~~iv~~Ll~~~~~~~~~~---------d~~g~tpL~~A~~~~~ 242 (760)
.+++++|++.+++ ++.. +..+.++++++.+.|.
T Consensus 152 ~~~~~~Ll~~~a~-~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 152 TQCSQFLYGVQEK-MGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp CCHHHHHHHHHHH-TTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHHHHHhhhc-ccccccceEEEEeccCCCCCCcccccCCC
Confidence 9999999999877 5554 6678888888888875
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=6e-25 Score=221.02 Aligned_cols=171 Identities=11% Similarity=0.021 Sum_probs=124.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHH
Q 004346 85 TKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPL 164 (760)
Q Consensus 85 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 164 (760)
+..|.||||.|++.|+.+.++.|+++|++ ++. +..|.||||+|+..|+.+++++|++.|++ ++.+|..|.|||
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~-----~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L 74 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMR-----VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITAL 74 (239)
T ss_dssp -----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCC-----ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHH
Confidence 34799999999999999999999999987 554 47899999999999999999999999998 999999999999
Q ss_pred HHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCC-cHHHHH--hcCC
Q 004346 165 FLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGL-SPLHIL--AGKP 241 (760)
Q Consensus 165 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~-tpL~~A--~~~~ 241 (760)
|+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++++++ ++.+|..|. ||||+| +..|
T Consensus 75 ~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g 150 (239)
T 1ycs_B 75 HNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEG 150 (239)
T ss_dssp HHHHHHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTT
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhc
Confidence 999999999999999999887 788999999999999999999999999999999 888888877 999999 6666
Q ss_pred CCCCccchhHHHHHHHhcccCchhhhhhhccc
Q 004346 242 NAFRSSSCLGLFDLMLYDCVSVDELREEKYDY 273 (760)
Q Consensus 242 ~~~~s~~~l~~~~~ll~~~~~~~~~~~~~~~~ 273 (760)
+ .++++.|+..|++++..+......
T Consensus 151 ~-------~~~~~~Ll~~~a~~~~~~~~~~~a 175 (239)
T 1ycs_B 151 Y-------TQCSQFLYGVQEKMGIMNKGVIYA 175 (239)
T ss_dssp C-------CCHHHHHHHHHHHTTTTGGGEEEE
T ss_pred c-------HHHHHHHHHhhhcccccccceEEE
Confidence 5 589999999999888765543333
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=8.5e-25 Score=199.06 Aligned_cols=134 Identities=17% Similarity=0.137 Sum_probs=127.1
Q ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCC
Q 004346 78 MSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARN 157 (760)
Q Consensus 78 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~ 157 (760)
+.+++..|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+. |+.+++++|+++|++ ++.+|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~ 74 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-----PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCAD 74 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCB
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-----cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcC
Confidence 467788899999999999999999999999999887 88999999999999999 999999999999999 89999
Q ss_pred CC-CCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCC
Q 004346 158 KD-SETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPD 221 (760)
Q Consensus 158 ~~-g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 221 (760)
.. |.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++|++
T Consensus 75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 75 PATLTRPVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TTTTBCHHHHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99 99999999999999999999999887 788999999999999999999999999998864
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=8.7e-25 Score=204.17 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=118.0
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCC
Q 004346 82 AKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSE 161 (760)
Q Consensus 82 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 161 (760)
...+..|.||||+||..|+.++|++|+++|++ ++.+|..|+||||+|+ .|+.+++++|++.|++ ++.+|..|.
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ 78 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN-----PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATL 78 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC-----TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTC
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCC
Confidence 34578899999999999999999999999887 8899999999999985 8999999999999998 899999999
Q ss_pred c-HHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHh
Q 004346 162 T-PLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILA 238 (760)
Q Consensus 162 t-pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~ 238 (760)
| |||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++++++ ++.+|..|.||.+-+.
T Consensus 79 ttpL~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 79 TRPVHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNHARIDAAEGPS 152 (156)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------------
T ss_pred cHHHHHHHHCCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC-CCccCcCcCcccccCC
Confidence 9 99999999999999999999877 778999999999999999999999999999999 9999999999987543
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=3.5e-25 Score=212.57 Aligned_cols=160 Identities=13% Similarity=0.070 Sum_probs=140.6
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCcccccC-CCCCcHHHHHHHcCCH----HHHHHHHHhhCcCCccccccccCCCC
Q 004346 53 EIDNLFESAMRGHWDHIVQAYESNPMSQEAKIT-KSEDTALHLAAASGHS----DVVCRLVETMGENESNILKIQNNRGN 127 (760)
Q Consensus 53 ~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~d~~g~ 127 (760)
+.++|+.|+..|+.+.++.++... . +.++ ..|+||||+|+..|+. +++++|+++|++ ++.+|..|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~--~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-----vn~~d~~g~ 76 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKG--Y--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-----IKSRTKEGT 76 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHS--S--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-----SSCCCTTCC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcC--c--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-----CCCCCCCCC
Confidence 457899999999999999999873 2 2334 6799999999999985 589999999998 999999999
Q ss_pred hHHHHHHHcCC------HHHHHHHHhcCCCccCCCCCCCC-cHHHHHHHcCC-----hHHHHHHHh-cCCCCCCcccCCC
Q 004346 128 TALHLAAALGN------VEMCRCMASKDPKLVGARNKDSE-TPLFLAALNGK-----KAAFLCLHF-LSHDKDSSLGRKS 194 (760)
Q Consensus 128 TpLh~Aa~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g~-----~~~v~~Ll~-~~~~~~~~~~~~~ 194 (760)
||||+|+..|+ .+++++|+++|++ ++.+|..|. ||||+|+..+. .+++++|++ .+++ ++.+|.
T Consensus 77 TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad---~~~~d~ 152 (186)
T 3t8k_A 77 TLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDK 152 (186)
T ss_dssp CTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC---TTCCCT
T ss_pred cHHHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC---CcccCC
Confidence 99999999987 6899999999999 999999999 99999999554 569999999 8887 888999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCCCcccc
Q 004346 195 NGDTILHAAISGDYFSLAFHIIRCYPDLVNCV 226 (760)
Q Consensus 195 ~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~ 226 (760)
.|+||||+|++.|+.+++++|++.... .+.+
T Consensus 153 ~G~TpL~~A~~~~~~~~v~~L~~~~~~-~~~~ 183 (186)
T 3t8k_A 153 WGLTALEFVKRCQKPIALKMMEDYIKK-YNLK 183 (186)
T ss_dssp TSCCHHHHHHTTTCHHHHHHHHHHHHH-HTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHHHHH-Hhcc
Confidence 999999999999999999999987544 4443
No 84
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.4e-22 Score=181.48 Aligned_cols=126 Identities=32% Similarity=0.419 Sum_probs=119.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHH
Q 004346 87 SEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFL 166 (760)
Q Consensus 87 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~ 166 (760)
+|+||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC-----CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHH
Confidence 589999999999999999999999887 788999999999999999999999999999998 89999999999999
Q ss_pred HHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCC
Q 004346 167 AALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPD 221 (760)
Q Consensus 167 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 221 (760)
|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|+++|++
T Consensus 75 A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHcChHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999877 778899999999999999999999999999874
No 85
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=5.2e-23 Score=187.19 Aligned_cols=126 Identities=25% Similarity=0.229 Sum_probs=101.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHH
Q 004346 85 TKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPL 164 (760)
Q Consensus 85 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 164 (760)
...|.||||+||..|+.+++++|++.|.+ ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|.|||
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L 84 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGAD-----VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPL 84 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHH
Confidence 45677888888888888888888888776 777888888888888888888888888888877 778888888888
Q ss_pred HHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhC
Q 004346 165 FLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCY 219 (760)
Q Consensus 165 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 219 (760)
|+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.|
T Consensus 85 ~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 85 HLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 888888888888888887766 6667788888888888888888888887754
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=7.6e-24 Score=203.25 Aligned_cols=155 Identities=14% Similarity=0.016 Sum_probs=137.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhhCcCCcccccccc-CCCChHHHHHHHcCCH----HHHHHHHhcCCCccCCCCCCCCc
Q 004346 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQN-NRGNTALHLAAALGNV----EMCRCMASKDPKLVGARNKDSET 162 (760)
Q Consensus 88 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d-~~g~TpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t 162 (760)
+.++||.||+.|+.+.++.+++.+. +.++ ..|+||||+|+..|+. +++++|+++|++ ++.+|..|+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~-------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~T 77 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY-------EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTT 77 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS-------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc-------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCc
Confidence 5689999999999999999998753 3455 7899999999999985 599999999999 9999999999
Q ss_pred HHHHHHHcCC------hHHHHHHHhcCCCCCCcccCCCCCC-hHHHHHHHcC-----CHHHHHHHHH-hCCCCccccccC
Q 004346 163 PLFLAALNGK------KAAFLCLHFLSHDKDSSLGRKSNGD-TILHAAISGD-----YFSLAFHIIR-CYPDLVNCVNEN 229 (760)
Q Consensus 163 pL~~A~~~g~------~~~v~~Ll~~~~~~~~~~~~~~~g~-t~Lh~A~~~~-----~~~iv~~Ll~-~~~~~~~~~d~~ 229 (760)
|||+|+..|+ .+++++|++.|++ ++.+|..|+ ||||+|+..+ +.+++++|++ .|++ ++.+|..
T Consensus 78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d~~ 153 (186)
T 3t8k_A 78 LFFPLFQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKW 153 (186)
T ss_dssp THHHHHHHCTTCHHHHHHHHHHHHHTTCC---SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCCTT
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHCCCC---CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccCCC
Confidence 9999999987 5789999999988 888999999 9999999954 3579999999 8998 9999999
Q ss_pred CCcHHHHHhcCCCCCCccchhHHHHHHHhccc
Q 004346 230 GLSPLHILAGKPNAFRSSSCLGLFDLMLYDCV 261 (760)
Q Consensus 230 g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~ 261 (760)
|.||||+|++.++ ..+++.|.....
T Consensus 154 G~TpL~~A~~~~~-------~~~v~~L~~~~~ 178 (186)
T 3t8k_A 154 GLTALEFVKRCQK-------PIALKMMEDYIK 178 (186)
T ss_dssp SCCHHHHHHTTTC-------HHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCC-------HHHHHHHHHHHH
Confidence 9999999999987 578888876543
No 87
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.89 E-value=3.9e-23 Score=188.01 Aligned_cols=131 Identities=14% Similarity=0.159 Sum_probs=125.4
Q ss_pred cccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCC-CC
Q 004346 119 LKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSN-GD 197 (760)
Q Consensus 119 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-g~ 197 (760)
++.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+. |+.+++++|++.+++ ++.+|.. |+
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~~g~ 79 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---PNCADPATLT 79 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC---SSCCBTTTTB
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC---CCCcCCCCCC
Confidence 889999999999999999999999999999998 89999999999999999 999999999999887 7789999 99
Q ss_pred hHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCCCCccchhHHHHHHHhcccC
Q 004346 198 TILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNAFRSSSCLGLFDLMLYDCVS 262 (760)
Q Consensus 198 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~~~s~~~l~~~~~ll~~~~~ 262 (760)
||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++ .++++.|+++|++
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~-------~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 80 RPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGH-------RDIARYLHAATGD 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTC-------HHHHHHHHHHHCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCC
Confidence 999999999999999999999999 99999999999999999987 6999999999874
No 88
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.88 E-value=3.6e-23 Score=193.12 Aligned_cols=144 Identities=17% Similarity=0.132 Sum_probs=118.5
Q ss_pred hhhccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCC
Q 004346 48 KSMQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGN 127 (760)
Q Consensus 48 ~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~ 127 (760)
...+.+.|+||.|+..|+.+.++.+++. +.+++..|..|+||||+|+ .|+.+++++|+++|++ ++.+|..|+
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-----~~~~d~~g~ 78 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-----PNCADPATL 78 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-----CCCCCTTTC
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-----CCCcCCCCC
Confidence 4456678999999999999999999988 7888899999999999996 9999999999999988 899999999
Q ss_pred h-HHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHH
Q 004346 128 T-ALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAA 203 (760)
Q Consensus 128 T-pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A 203 (760)
| |||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.++..|.||.+.+
T Consensus 79 ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 79 TRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAEGP 151 (156)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred cHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC---CCccCcCcCcccccC
Confidence 9 99999999999999999999999 999999999999999999999999999999887 778899999998744
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=5.1e-22 Score=180.62 Aligned_cols=128 Identities=24% Similarity=0.250 Sum_probs=118.4
Q ss_pred hhhccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCC
Q 004346 48 KSMQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGN 127 (760)
Q Consensus 48 ~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~ 127 (760)
.....+.|+||.|+..|+.+.++.+++. +.+++..|..|+||||+||..|+.+++++|++.|++ ++.+|..|+
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~ 81 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-----VNAVDAIGF 81 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTCC
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCCCC
Confidence 3445578999999999999999999998 788888999999999999999999999999999988 889999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcC
Q 004346 128 TALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLS 183 (760)
Q Consensus 128 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 183 (760)
||||+|+..|+.+++++|+++|++ ++.+|.+|.||||+|+..|+.+++++|++.|
T Consensus 82 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 82 TPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999999999999 8999999999999999999999999998764
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=7e-23 Score=186.60 Aligned_cols=129 Identities=19% Similarity=0.165 Sum_probs=114.5
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCc
Q 004346 83 KITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSET 162 (760)
Q Consensus 83 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t 162 (760)
.+|..|+||||+||..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++.+++ ++.+|..|.|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t 78 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-----PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDS 78 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCC
Confidence 5688999999999999999999999999887 888999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCC
Q 004346 163 PLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYP 220 (760)
Q Consensus 163 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 220 (760)
|||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..+..+++++|.+...
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 79 PLHDAAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 99999999999999999999877 77899999999999998888888877765543
No 91
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.85 E-value=6e-21 Score=170.66 Aligned_cols=125 Identities=31% Similarity=0.389 Sum_probs=118.8
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHH
Q 004346 53 EIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHL 132 (760)
Q Consensus 53 ~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~ 132 (760)
+.|+|+.|+..|+.+.++.+++. +.+++..|..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~l~~ 74 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHL 74 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHH
T ss_pred CccHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-----CcccCCCCCcHHHH
Confidence 57899999999999999999998 777888899999999999999999999999999887 88999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCC
Q 004346 133 AAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHD 185 (760)
Q Consensus 133 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 185 (760)
|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 75 A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999 899999999999999999999999999998864
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=2.2e-21 Score=186.29 Aligned_cols=141 Identities=18% Similarity=0.118 Sum_probs=127.5
Q ss_pred hhccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCcccccccc-CCCC
Q 004346 49 SMQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQN-NRGN 127 (760)
Q Consensus 49 ~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d-~~g~ 127 (760)
.+..+.||||.|+..|+.+.++.++. +.+++.+|..|+||||+|+..|+.+++++|+++|++ ++.+| ..|+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~~g~ 111 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-----LDHRDMRGGL 111 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCSSSSC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCCCCC
Confidence 34567899999999999999998887 567888899999999999999999999999999988 78888 8999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcC
Q 004346 128 TALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGD 207 (760)
Q Consensus 128 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~ 207 (760)
||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++. ..+.++|++|+..|
T Consensus 112 tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~--------------------~~~~~~l~~a~~~~ 170 (183)
T 3deo_A 112 TALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT--------------------TPKGNPMQFGRRIG 170 (183)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT--------------------CCCCSHHHHHHHHH
T ss_pred CHHHHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC--------------------cccccHHHHHHHcC
Confidence 999999999999999999999999 899999999999999975432 24679999999999
Q ss_pred CHHHHHHHHHh
Q 004346 208 YFSLAFHIIRC 218 (760)
Q Consensus 208 ~~~iv~~Ll~~ 218 (760)
+.+++++|.++
T Consensus 171 ~~~i~~~L~~~ 181 (183)
T 3deo_A 171 LEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999999764
No 93
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=1.4e-21 Score=174.20 Aligned_cols=112 Identities=23% Similarity=0.246 Sum_probs=85.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHH
Q 004346 85 TKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPL 164 (760)
Q Consensus 85 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 164 (760)
+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+|||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL 77 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-----VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPL 77 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC-----TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC-----cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHH
Confidence 45677788888888888888888887766 677777888888888888888888888887777 777777888888
Q ss_pred HHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHH
Q 004346 165 FLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAIS 205 (760)
Q Consensus 165 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~ 205 (760)
|+|+..|+.+++++|++.+++ ++.+|..|+||||+|..
T Consensus 78 ~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 78 LSAVYEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCC
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHhCC
Confidence 888888888888888777666 66677778888887743
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=8.9e-22 Score=189.00 Aligned_cols=140 Identities=19% Similarity=0.154 Sum_probs=125.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCC-CCCCcH
Q 004346 85 TKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARN-KDSETP 163 (760)
Q Consensus 85 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tp 163 (760)
+..|+||||+||..|+.++++.|++ +.+ ++.+|..|+||||+|+..|+.+++++|+++|++ ++.++ ..|+||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tp 113 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTA 113 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCH
Confidence 5588999999999999999999999 776 889999999999999999999999999999999 88887 889999
Q ss_pred HHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCC
Q 004346 164 LFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNA 243 (760)
Q Consensus 164 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~ 243 (760)
||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++ ...+.+||++|+..+.
T Consensus 114 L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~- 171 (183)
T 3deo_A 114 LHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGL- 171 (183)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHH-
T ss_pred HHHHHhcCcHHHHHHHHHcCCC---CcCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCH-
Confidence 9999999999999999999887 77899999999999987432 1456899999999875
Q ss_pred CCccchhHHHHHHHhc
Q 004346 244 FRSSSCLGLFDLMLYD 259 (760)
Q Consensus 244 ~~s~~~l~~~~~ll~~ 259 (760)
.++++.|..+
T Consensus 172 ------~~i~~~L~~~ 181 (183)
T 3deo_A 172 ------EKVINVLEGQ 181 (183)
T ss_dssp ------HHHHHHHHTC
T ss_pred ------HHHHHHHHHh
Confidence 5888887654
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=3.3e-21 Score=194.11 Aligned_cols=143 Identities=17% Similarity=0.114 Sum_probs=129.1
Q ss_pred hccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCcccccccc-CCCCh
Q 004346 50 MQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQN-NRGNT 128 (760)
Q Consensus 50 ~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d-~~g~T 128 (760)
...+.||||.|+..|+.+.++.++. +.+++.+|..|+||||+||..|+.++|++|+++|++ ++.+| ..|+|
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~~g~t 113 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-----LDHRDMRGGLT 113 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCSSSCCC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-----CCcCCCCCCCC
Confidence 3567899999999999999988887 567888899999999999999999999999999988 78888 88999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCC
Q 004346 129 ALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDY 208 (760)
Q Consensus 129 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~ 208 (760)
|||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++ ...+.||||+|+..|+
T Consensus 114 ~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~--------------------~~~~~~~l~~a~~~g~ 172 (244)
T 3ui2_A 114 ALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK--------------------TTPKGNPMQFGRRIGL 172 (244)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT--------------------TCCCSSHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh--------------------ccCCCCHHHHHHHcCh
Confidence 99999999999999999999999 99999999999999986322 2457899999999999
Q ss_pred HHHHHHHHHhCCC
Q 004346 209 FSLAFHIIRCYPD 221 (760)
Q Consensus 209 ~~iv~~Ll~~~~~ 221 (760)
.+++++|++...+
T Consensus 173 ~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 173 EKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHHHEE
T ss_pred HHHHHHHHHhccc
Confidence 9999999987544
No 96
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=6.2e-22 Score=196.59 Aligned_cols=137 Identities=19% Similarity=0.121 Sum_probs=112.4
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhc-CCCccCCCCCCCCc
Q 004346 84 ITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASK-DPKLVGARNKDSET 162 (760)
Q Consensus 84 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t 162 (760)
.+..|.||||+||..|+.+++++|++.|++ ++.+|..|+||||+||..|+.+++++|++. |++ ++.+|..|+|
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~t 142 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG-----VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDT 142 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCC
T ss_pred cccccccccccccccCcHHHHHHHHhCCCC-----ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCC
Confidence 366789999999999999999999999887 888999999999999999999999999998 777 8999999999
Q ss_pred HHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCC
Q 004346 163 PLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENG 230 (760)
Q Consensus 163 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g 230 (760)
|||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++.++++.|++.++. ....|.+|
T Consensus 143 pL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~-~~~~~~~~ 206 (222)
T 3ehr_A 143 ALHAAAWKGYADIVQLLLAKGAR---TDLRNIEKKLAFDMATNAACASLLKKKQGTDAV-RTLSNAED 206 (222)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCC---SCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC---CccccCCCCCHHHHhcchhHHHHHHHHhccchh-hhccchhh
Confidence 99999999999999999999887 778999999999999999999999999998887 55555444
No 97
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=1.6e-21 Score=177.58 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=111.4
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHH
Q 004346 121 IQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTIL 200 (760)
Q Consensus 121 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L 200 (760)
.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCCCCHH
Confidence 6899999999999999999999999999998 899999999999999999999999999999887 778999999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCC
Q 004346 201 HAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPN 242 (760)
Q Consensus 201 h~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~ 242 (760)
|+|+..|+.+++++|++.+++ ++.+|.+|.||||+|+..+.
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~ 121 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESM 121 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccH
Confidence 999999999999999999998 99999999999999987653
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=1.7e-21 Score=196.17 Aligned_cols=144 Identities=19% Similarity=0.149 Sum_probs=129.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCC-CCCCcH
Q 004346 85 TKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARN-KDSETP 163 (760)
Q Consensus 85 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tp 163 (760)
+..|+||||+||..|+.++++.|++ +++ ++.+|..|+||||+||..|+.++|++|+++|++ ++.++ ..|.||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~ 114 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTA 114 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCC-----TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCH
Confidence 4578999999999999999999999 776 889999999999999999999999999999999 88887 889999
Q ss_pred HHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHhcCCCC
Q 004346 164 LFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILAGKPNA 243 (760)
Q Consensus 164 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~~~~ 243 (760)
||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..+ .+..+.||||+|+..|+
T Consensus 115 L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g~- 172 (244)
T 3ui2_A 115 LHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGL- 172 (244)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHHHH-
T ss_pred HHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHcCh-
Confidence 9999999999999999999887 7889999999999998622 12578999999999986
Q ss_pred CCccchhHHHHHHHhcccCc
Q 004346 244 FRSSSCLGLFDLMLYDCVSV 263 (760)
Q Consensus 244 ~~s~~~l~~~~~ll~~~~~~ 263 (760)
.++++.|+..+.+.
T Consensus 173 ------~~iv~~L~~~~~~~ 186 (244)
T 3ui2_A 173 ------EKVINVLEGQVFEY 186 (244)
T ss_dssp ------HHHHHHHHHHHEEE
T ss_pred ------HHHHHHHHHhcccc
Confidence 68999998876543
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=199.26 Aligned_cols=140 Identities=16% Similarity=0.072 Sum_probs=123.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhhCcCCcccccc------ccCCCChHHHHHHHc---CCHHHHHHHHhcCCCccCCCC
Q 004346 87 SEDTALHLAAASGHSDVVCRLVETMGENESNILKI------QNNRGNTALHLAAAL---GNVEMCRCMASKDPKLVGARN 157 (760)
Q Consensus 87 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~------~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~ 157 (760)
.+.++||.|+..|+.+.++.|++.+.+ ++. .|..|+||||+|+.. |+.+++++|++.|++ ++.+|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d-----~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d 223 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQD-----FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKA 223 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCC-----TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCc-----ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCC
Confidence 345779999999999999999999887 555 689999999999997 899999999999999 89999
Q ss_pred CCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHH
Q 004346 158 KDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHIL 237 (760)
Q Consensus 158 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A 237 (760)
..|+||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+++ .|.||||+|
T Consensus 224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A 293 (301)
T 2b0o_E 224 ADGNTALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVD 293 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC---CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHH
Confidence 9999999999999999999999999887 788999999999999999999999999998764 689999999
Q ss_pred hcCCC
Q 004346 238 AGKPN 242 (760)
Q Consensus 238 ~~~~~ 242 (760)
+..|+
T Consensus 294 ~~~g~ 298 (301)
T 2b0o_E 294 YSWVI 298 (301)
T ss_dssp -----
T ss_pred HhcCC
Confidence 99875
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=200.68 Aligned_cols=140 Identities=22% Similarity=0.200 Sum_probs=122.6
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCcccc------cCCCCCcHHHHHHHc---CCHHHHHHHHHhhCcCCcccccccc
Q 004346 53 EIDNLFESAMRGHWDHIVQAYESNPMSQEAK------ITKSEDTALHLAAAS---GHSDVVCRLVETMGENESNILKIQN 123 (760)
Q Consensus 53 ~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~------~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~d 123 (760)
..++|+.|+..|+.+.++.++.. +.+++. .+..|+||||+||.. |+.+++++|+++|++ ++.+|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-----vn~~d 223 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-----LDAKA 223 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-----TTCCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-----CCCCC
Confidence 45789999999999999999988 666665 588999999999997 899999999999988 89999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHH
Q 004346 124 NRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAA 203 (760)
Q Consensus 124 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A 203 (760)
..|+||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.+++ .|.||||+|
T Consensus 224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A 293 (301)
T 2b0o_E 224 ADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVD 293 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC--
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHH
Confidence 9999999999999999999999999999 999999999999999999999999999998764 488999999
Q ss_pred HHcCCH
Q 004346 204 ISGDYF 209 (760)
Q Consensus 204 ~~~~~~ 209 (760)
+..|+.
T Consensus 294 ~~~g~~ 299 (301)
T 2b0o_E 294 YSWVIS 299 (301)
T ss_dssp ------
T ss_pred HhcCCc
Confidence 998864
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.83 E-value=1.5e-20 Score=167.57 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=104.8
Q ss_pred ccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHH
Q 004346 51 QMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTAL 130 (760)
Q Consensus 51 ~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpL 130 (760)
..+.++|+.|+..|+.+.++.+++. +.+++..|..|+||||+||..|+.+++++|++.|++ ++.+|..|+|||
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~tpL 77 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-----INAPDKHHITPL 77 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-----TTCCCTTSCCHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCCCCCHH
Confidence 4567999999999999999999998 678888999999999999999999999999999988 889999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCC
Q 004346 131 HLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGK 172 (760)
Q Consensus 131 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 172 (760)
|+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..+.
T Consensus 78 ~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~ 118 (123)
T 3aaa_C 78 LSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQAI 118 (123)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCCHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhCCHHH
Confidence 999999999999999999999 89999999999999954433
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.81 E-value=2.3e-20 Score=185.20 Aligned_cols=134 Identities=23% Similarity=0.228 Sum_probs=117.5
Q ss_pred hhhhhhccchHHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHh-hCcCCcccccccc
Q 004346 45 EEEKSMQMEIDNLFESAMRGHWDHIVQAYESNPMSQEAKITKSEDTALHLAAASGHSDVVCRLVET-MGENESNILKIQN 123 (760)
Q Consensus 45 ~~~~~~~~~~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~d 123 (760)
.....++.+.|+||.||..|+.+.++.+++. +.+++.+|..|+||||+||..|+.++|++|++. +++ ++.+|
T Consensus 65 ~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-----~~~~d 137 (222)
T 3ehr_A 65 YVAEQAESIDNPLHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-----LNQQN 137 (222)
T ss_dssp HHHHHEEEESCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-----CCCCC
T ss_pred hccccccccccccccccccCcHHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-----ccccC
Confidence 3455667788999999999999999999997 788888999999999999999999999999998 777 89999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCC
Q 004346 124 NRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDK 186 (760)
Q Consensus 124 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 186 (760)
..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.++++.|+..++..
T Consensus 138 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 138 KLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 9999999999999999999999999999 8999999999999999999999999999888763
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.5e-19 Score=152.14 Aligned_cols=92 Identities=36% Similarity=0.494 Sum_probs=77.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHH
Q 004346 87 SEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFL 166 (760)
Q Consensus 87 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~ 166 (760)
+|+||||+||..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-----CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHH
Confidence 478888888888888888888888877 788888888888888888888888888888888 78888888888888
Q ss_pred HHHcCChHHHHHHHhcCC
Q 004346 167 AALNGKKAAFLCLHFLSH 184 (760)
Q Consensus 167 A~~~g~~~~v~~Ll~~~~ 184 (760)
|+..|+.+++++|++.++
T Consensus 75 A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HHHTTCHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHcCC
Confidence 888888888888887765
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=1.4e-19 Score=191.83 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=117.8
Q ss_pred CCCCCcHHHHHHHc-CCHHHHHHHHHhhCcCCcccccccc--CCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCC
Q 004346 85 TKSEDTALHLAAAS-GHSDVVCRLVETMGENESNILKIQN--NRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSE 161 (760)
Q Consensus 85 d~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~d--~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 161 (760)
+..+.|+||.|+.. |+.++++.|++.|++ ++..| ..|.||||+|+..|+.+++++|+++|++ ++.+|..|.
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-----vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~ 269 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGAD-----VNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGR 269 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-----TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCC-----CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCC
Confidence 44567899999999 999999999999988 77887 8999999999999999999999999999 899999999
Q ss_pred cHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCC--ccccccCCCcHHHHHhc
Q 004346 162 TPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDL--VNCVNENGLSPLHILAG 239 (760)
Q Consensus 162 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~--~~~~d~~g~tpL~~A~~ 239 (760)
||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++.+++++|+..+... ....+..+.|+++.+..
T Consensus 270 TpLh~A~~~g~~~~v~~LL~~Gad---~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 270 GPLHHATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred CHHHHHHHcCcHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 999999999999999999999887 7889999999999999999999999999876442 33456778888888765
Q ss_pred CC
Q 004346 240 KP 241 (760)
Q Consensus 240 ~~ 241 (760)
..
T Consensus 347 ~~ 348 (368)
T 3jue_A 347 FS 348 (368)
T ss_dssp --
T ss_pred HH
Confidence 53
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=2.4e-19 Score=190.16 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=118.3
Q ss_pred cchHHHHHHHHc-CCHHHHHHHHHcCCCCcccccC--CCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCCh
Q 004346 52 MEIDNLFESAMR-GHWDHIVQAYESNPMSQEAKIT--KSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNT 128 (760)
Q Consensus 52 ~~~~~L~~Aa~~-g~~~~v~~lL~~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~T 128 (760)
...++||.|+.. |+.+.++.+|.. +++++..+ ..|.||||+||..|+.++|++|+++|++ ++.+|..|+|
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-----vn~~d~~G~T 270 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-----VNQADSAGRG 270 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCC
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-----CCCCCCCCCC
Confidence 356799999999 999999999988 77888777 8999999999999999999999999988 8999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHc
Q 004346 129 ALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISG 206 (760)
Q Consensus 129 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~ 206 (760)
|||+|+..|+.+++++|+++|++ ++.+|.+|.||||+|+..|+.+++++|+..+.........+..+.|+++.+...
T Consensus 271 pLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 271 PLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 99999999999999999999999 899999999999999999999999999988766544555667788888776654
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.80 E-value=7e-19 Score=180.32 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=60.0
Q ss_pred cHHHHHHHcCCHHHHHHHHHhhCcCCccc-cccccCCCChHHHHHHHc---CCHHHHHHHHhcCCCccCCCCCCCCcHHH
Q 004346 90 TALHLAAASGHSDVVCRLVETMGENESNI-LKIQNNRGNTALHLAAAL---GNVEMCRCMASKDPKLVGARNKDSETPLF 165 (760)
Q Consensus 90 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 165 (760)
++||.|+..|+.+.++.+++.|.+....+ ++..|..|+||||+|+.. |+.+++++|+++|++ ++.+|..|.||||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh 210 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHH
Confidence 44444444444444444444444322222 344444444444444444 444444444444444 4444444444444
Q ss_pred HHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCC
Q 004346 166 LAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYP 220 (760)
Q Consensus 166 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 220 (760)
+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.++
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 44444444444444444443 44444444445444444444444444444444
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=8.4e-19 Score=179.71 Aligned_cols=128 Identities=26% Similarity=0.269 Sum_probs=116.5
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCc----ccccCCCCCcHHHHHHHc---CCHHHHHHHHHhhCcCCccccccccCC
Q 004346 53 EIDNLFESAMRGHWDHIVQAYESNPMSQ----EAKITKSEDTALHLAAAS---GHSDVVCRLVETMGENESNILKIQNNR 125 (760)
Q Consensus 53 ~~~~L~~Aa~~g~~~~v~~lL~~~~~~~----~~~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~d~~ 125 (760)
..++|+.|+..|+.+.+..++....... .+..|..|+||||+||.. |+.+++++|+++|++ ++.+|..
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-----in~~d~~ 204 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-----LDKQTGK 204 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-----TTCCCTT
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-----ccccCCC
Confidence 4579999999999999999998843221 445588999999999999 899999999999988 8999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCC
Q 004346 126 GNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDK 186 (760)
Q Consensus 126 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 186 (760)
|+||||+|+..|+.+++++|+++|++ ++.+|.+|.||||+|+..|+.+++++|++.+++.
T Consensus 205 g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 205 GSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999 9999999999999999999999999999998863
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=5.3e-19 Score=197.20 Aligned_cols=136 Identities=17% Similarity=0.093 Sum_probs=114.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccc------cCCCChHHHHHHH---cCCHHHHHHHHhcCCCccCCCCC
Q 004346 88 EDTALHLAAASGHSDVVCRLVETMGENESNILKIQ------NNRGNTALHLAAA---LGNVEMCRCMASKDPKLVGARNK 158 (760)
Q Consensus 88 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~------d~~g~TpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~~~ 158 (760)
..+.||.|+..|+.+.|+.|++.|++ ++.+ |..|+||||+||. .|+.+++++|+++|++ ++.+|.
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~-----~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~ 205 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQD-----FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAA 205 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCC-----SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCS
T ss_pred cHHHHHHHHhccCHHHHHHHHhhccc-----ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCC
Confidence 34789999999999999999999987 5555 8899999999976 8999999999999998 899999
Q ss_pred CCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhCCCCccccccCCCcHHHHHh
Q 004346 159 DSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPLHILA 238 (760)
Q Consensus 159 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~ 238 (760)
.|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+++ ++. +|+|.+.
T Consensus 206 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~-~~~------~~~h~~~ 275 (497)
T 3lvq_E 206 DGNTALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQAQAG-TFA------FPLHVDY 275 (497)
T ss_dssp SSCCHHHHHTTTTCHHHHHHHHHTCCC---CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCC-CCC------Ccceeec
Confidence 999999999999999999999999887 788999999999999999999999999999988 554 5777665
Q ss_pred c
Q 004346 239 G 239 (760)
Q Consensus 239 ~ 239 (760)
.
T Consensus 276 ~ 276 (497)
T 3lvq_E 276 S 276 (497)
T ss_dssp -
T ss_pred c
Confidence 4
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.78 E-value=7.2e-19 Score=196.16 Aligned_cols=135 Identities=22% Similarity=0.243 Sum_probs=116.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCccccc------CCCCCcHHHHHHH---cCCHHHHHHHHHhhCcCCccccccccC
Q 004346 54 IDNLFESAMRGHWDHIVQAYESNPMSQEAKI------TKSEDTALHLAAA---SGHSDVVCRLVETMGENESNILKIQNN 124 (760)
Q Consensus 54 ~~~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~------d~~g~t~Lh~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~d~ 124 (760)
.+.|+.|+..|+.+.++.+|.. +++++.. |..|+||||+||. .|+.++|++|+++|++ ++.+|.
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-----vn~~d~ 205 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-----LDAKAA 205 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-----TTCCCS
T ss_pred HHHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-----CCccCC
Confidence 3679999999999999999999 6776665 8899999999977 8999999999999998 899999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHH
Q 004346 125 RGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAI 204 (760)
Q Consensus 125 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~ 204 (760)
.|+||||+||..|+.++|++|+++|++ ++.+|.+|+||||+|+..|+.+++++|++.+++ ++ .+|+|.+.
T Consensus 206 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~---~~------~~~~h~~~ 275 (497)
T 3lvq_E 206 DGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG---TF------AFPLHVDY 275 (497)
T ss_dssp SSCCHHHHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------------------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCC---CC------CCcceeec
Confidence 999999999999999999999999999 999999999999999999999999999999987 33 26888776
Q ss_pred H
Q 004346 205 S 205 (760)
Q Consensus 205 ~ 205 (760)
.
T Consensus 276 ~ 276 (497)
T 3lvq_E 276 S 276 (497)
T ss_dssp -
T ss_pred c
Confidence 4
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.78 E-value=1.2e-18 Score=146.55 Aligned_cols=93 Identities=30% Similarity=0.379 Sum_probs=87.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHHHHHH
Q 004346 125 RGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTILHAAI 204 (760)
Q Consensus 125 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~ 204 (760)
+|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHH
Confidence 489999999999999999999999999 899999999999999999999999999999887 7789999999999999
Q ss_pred HcCCHHHHHHHHHhCCC
Q 004346 205 SGDYFSLAFHIIRCYPD 221 (760)
Q Consensus 205 ~~~~~~iv~~Ll~~~~~ 221 (760)
..|+.+++++|++.|++
T Consensus 77 ~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHcCCC
Confidence 99999999999998864
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=5.5e-19 Score=155.28 Aligned_cols=107 Identities=33% Similarity=0.427 Sum_probs=68.8
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcH
Q 004346 84 ITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETP 163 (760)
Q Consensus 84 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp 163 (760)
+|.+|+||||+||..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|.||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tp 78 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTP 78 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-----SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCH
Confidence 456666666666666666666666666655 566666666666666666666666666666666 66666666666
Q ss_pred HHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChH
Q 004346 164 LFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTI 199 (760)
Q Consensus 164 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~ 199 (760)
||+|+..|+.+++++|++.+++ ++.++..|.||
T Consensus 79 l~~A~~~~~~~~~~~Ll~~ga~---~n~~~~~~~~~ 111 (115)
T 2l6b_A 79 EHLAKKNGHHEIVKLLDAKGAD---VNARSWGSSHH 111 (115)
T ss_dssp THHHHTTTCHHHHHHHHTTSSS---HHHHSCCCC--
T ss_pred HHHHHHCCCHHHHHHHHHcCCC---CCcCCcccccc
Confidence 6666666666666666666655 55555555554
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.75 E-value=1.3e-18 Score=152.81 Aligned_cols=109 Identities=31% Similarity=0.285 Sum_probs=101.9
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCChHH
Q 004346 121 IQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGDTIL 200 (760)
Q Consensus 121 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L 200 (760)
.+|..|+||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+|||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~tpl 79 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTPE 79 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---TTCCCTTCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCHH
Confidence 5789999999999999999999999999998 899999999999999999999999999999877 778999999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCccccccCCCcHH
Q 004346 201 HAAISGDYFSLAFHIIRCYPDLVNCVNENGLSPL 234 (760)
Q Consensus 201 h~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL 234 (760)
|+|+..++.+++++|++++++ ++.++..|.||-
T Consensus 80 ~~A~~~~~~~~~~~Ll~~ga~-~n~~~~~~~~~~ 112 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAKGAD-VNARSWGSSHHH 112 (115)
T ss_dssp HHHHTTTCHHHHHHHHTTSSS-HHHHSCCCC---
T ss_pred HHHHHCCCHHHHHHHHHcCCC-CCcCCccccccc
Confidence 999999999999999999999 999999999873
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=6.3e-17 Score=140.68 Aligned_cols=93 Identities=25% Similarity=0.312 Sum_probs=77.1
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHhhCcCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCC
Q 004346 81 EAKITKSEDTALHLAAASGHSDVVCRLVETMGENESNILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDS 160 (760)
Q Consensus 81 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g 160 (760)
....|.+|+||||+||..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g 90 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFG 90 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCC
Confidence 344577888899999999999999988888877 788888889999999999999999999888888 88888888
Q ss_pred CcHHHHHHHcCChHHHHHH
Q 004346 161 ETPLFLAALNGKKAAFLCL 179 (760)
Q Consensus 161 ~tpL~~A~~~g~~~~v~~L 179 (760)
.||||+|+..|+.+++++|
T Consensus 91 ~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHh
Confidence 8999999988888888876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.64 E-value=5.5e-16 Score=134.67 Aligned_cols=94 Identities=24% Similarity=0.215 Sum_probs=84.6
Q ss_pred ccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCCcccCCCCCC
Q 004346 118 ILKIQNNRGNTALHLAAALGNVEMCRCMASKDPKLVGARNKDSETPLFLAALNGKKAAFLCLHFLSHDKDSSLGRKSNGD 197 (760)
Q Consensus 118 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~ 197 (760)
.....|.+|+||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~ 91 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGK 91 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccccCCC
Confidence 3567889999999999999999999999999998 899999999999999999999999999999877 778999999
Q ss_pred hHHHHHHHcCCHHHHHHH
Q 004346 198 TILHAAISGDYFSLAFHI 215 (760)
Q Consensus 198 t~Lh~A~~~~~~~iv~~L 215 (760)
||||+|+..|+.+++++|
T Consensus 92 tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 92 TAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHh
Confidence 999999999999999876
No 115
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=29.91 E-value=1.5e+02 Score=26.73 Aligned_cols=14 Identities=21% Similarity=0.467 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 004346 644 FAISSLVSLCFSVT 657 (760)
Q Consensus 644 F~~~~~~a~~~s~~ 657 (760)
|.++-.++..+++.
T Consensus 5 F~~~a~~~i~~al~ 18 (184)
T 3rko_J 5 FYICGLIAILATLR 18 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 116
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=25.92 E-value=62 Score=32.72 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004346 688 TSLHVSVVSVWISFCAGHYLV 708 (760)
Q Consensus 688 ~~~~~~~~~m~~af~~~~~~~ 708 (760)
.+..+++.++...|++|+|-+
T Consensus 281 ~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 356678888889999999953
No 117
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=24.92 E-value=1.1e+02 Score=23.14 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=27.4
Q ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhhhhhHH
Q 004346 702 CAGHYLVIRDMLRSMALPMYAATCLPMAYFALIQLPLYV 740 (760)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (760)
.++.-.-+|..++..++=++.++|+.+.|..++.+....
T Consensus 19 ~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~V~ 57 (76)
T 1vry_A 19 SSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVN 57 (76)
T ss_dssp HHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444577777888888888888877777777766443
No 118
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=24.03 E-value=50 Score=33.84 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004346 688 TSLHVSVVSVWISFCAGHYL 707 (760)
Q Consensus 688 ~~~~~~~~~m~~af~~~~~~ 707 (760)
.+..+++.+|...|++|+|-
T Consensus 305 ~LTiit~IflP~T~IaGiyG 324 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYG 324 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 45667888888999999984
No 119
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.38 E-value=68 Score=20.46 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=13.7
Q ss_pred hHHHHHHHHcCCHHHHHHH
Q 004346 54 IDNLFESAMRGHWDHIVQA 72 (760)
Q Consensus 54 ~~~L~~Aa~~g~~~~v~~l 72 (760)
...++.||..||.+.+..|
T Consensus 14 EQqiyvA~seGd~etv~~L 32 (40)
T 1gp8_A 14 RKQMDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHH
Confidence 3567788888888877654
No 120
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=21.23 E-value=3.8e+02 Score=26.85 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=21.7
Q ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhhh
Q 004346 700 SFCAGHYLVIRDMLRSMALPMYAATCLPMAYFALIQL 736 (760)
Q Consensus 700 af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (760)
.|...+--.+|+.+..-+|-++.++|+.+.+..++.+
T Consensus 258 v~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~ 294 (347)
T 3rhw_A 258 AQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEF 294 (347)
T ss_dssp HHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHH
Confidence 4555555677877765566666666655554444443
Done!