Query 004347
Match_columns 759
No_of_seqs 553 out of 3110
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 21:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0385 Chromatin remodeling c 100.0 8E-130 2E-134 1057.9 51.8 603 82-722 69-673 (971)
2 KOG0384 Chromodomain-helicase 100.0 4E-109 9E-114 935.7 39.4 518 182-725 363-894 (1373)
3 KOG0388 SNF2 family DNA-depend 100.0 8E-107 2E-111 866.4 41.2 467 182-671 560-1183(1185)
4 PLN03142 Probable chromatin-re 100.0 5E-100 1E-104 895.7 62.4 506 183-719 163-669 (1033)
5 KOG0386 Chromatin remodeling c 100.0 9E-102 2E-106 860.8 33.9 519 182-719 387-907 (1157)
6 KOG0391 SNF2 family DNA-depend 100.0 1.5E-99 3E-104 841.8 38.1 480 180-675 606-1420(1958)
7 KOG0389 SNF2 family DNA-depend 100.0 1.8E-98 4E-103 817.0 43.7 471 185-667 395-913 (941)
8 KOG0387 Transcription-coupled 100.0 8.9E-98 2E-102 812.9 39.6 475 180-665 196-681 (923)
9 KOG0392 SNF2 family DNA-depend 100.0 2.6E-90 5.6E-95 778.2 41.8 493 182-691 968-1495(1549)
10 KOG1015 Transcription regulato 100.0 2.4E-79 5.2E-84 671.1 33.7 491 177-671 656-1306(1567)
11 KOG0390 DNA repair protein, SN 100.0 2E-77 4.4E-82 673.2 41.3 469 186-667 235-732 (776)
12 KOG1002 Nucleotide excision re 100.0 1.6E-70 3.4E-75 568.9 34.1 487 183-691 178-790 (791)
13 KOG4439 RNA polymerase II tran 100.0 2.1E-68 4.6E-73 574.3 32.7 478 183-690 319-899 (901)
14 COG0553 HepA Superfamily II DN 100.0 2.4E-66 5.3E-71 633.6 40.5 493 184-691 333-864 (866)
15 KOG1016 Predicted DNA helicase 100.0 5.7E-66 1.2E-70 555.9 23.6 488 187-694 252-892 (1387)
16 PRK04914 ATP-dependent helicas 100.0 1E-58 2.2E-63 545.1 36.1 438 187-668 150-631 (956)
17 KOG1000 Chromatin remodeling p 100.0 1.9E-58 4.2E-63 480.0 32.8 425 188-668 197-630 (689)
18 KOG0383 Predicted helicase [Ge 100.0 2.1E-54 4.6E-59 483.4 11.6 386 187-596 293-696 (696)
19 KOG1001 Helicase-like transcri 100.0 2.8E-51 6E-56 465.9 24.7 449 192-665 135-673 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 2.4E-42 5.2E-47 369.1 23.5 280 193-493 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 6.5E-41 1.4E-45 382.0 35.6 343 184-650 250-615 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 7.2E-36 1.6E-40 358.6 41.9 444 188-659 14-496 (773)
23 COG1111 MPH1 ERCC4-like helica 100.0 1E-31 2.2E-36 284.6 37.2 410 187-664 13-503 (542)
24 KOG0298 DEAD box-containing he 100.0 1.3E-32 2.9E-37 315.2 23.0 266 206-492 372-690 (1394)
25 PHA02558 uvsW UvsW helicase; P 100.0 6.5E-31 1.4E-35 298.7 34.0 337 187-643 112-456 (501)
26 COG1061 SSL2 DNA or RNA helica 100.0 7.5E-30 1.6E-34 284.4 33.6 367 184-654 31-406 (442)
27 KOG0330 ATP-dependent RNA heli 100.0 6.2E-30 1.4E-34 261.2 23.5 326 187-653 81-416 (476)
28 PTZ00110 helicase; Provisional 100.0 1.8E-28 3.8E-33 280.7 31.2 321 187-642 150-484 (545)
29 KOG0331 ATP-dependent RNA heli 100.0 2.4E-28 5.1E-33 266.1 27.2 320 187-641 111-447 (519)
30 TIGR00614 recQ_fam ATP-depende 100.0 1.3E-27 2.9E-32 270.2 31.2 310 185-636 7-329 (470)
31 PRK11776 ATP-dependent RNA hel 100.0 1.3E-27 2.9E-32 270.3 30.9 317 187-642 24-349 (460)
32 PLN00206 DEAD-box ATP-dependen 100.0 2.4E-27 5.2E-32 270.6 29.8 317 187-642 141-475 (518)
33 PRK10590 ATP-dependent RNA hel 100.0 2.6E-27 5.7E-32 266.9 29.5 324 187-651 21-359 (456)
34 PRK04837 ATP-dependent RNA hel 100.0 2.5E-27 5.5E-32 265.2 28.7 316 187-641 28-361 (423)
35 PRK04537 ATP-dependent RNA hel 100.0 7.3E-27 1.6E-31 268.3 31.3 317 187-641 29-363 (572)
36 PRK11192 ATP-dependent RNA hel 100.0 1E-26 2.3E-31 261.3 31.1 315 187-635 21-347 (434)
37 PRK11634 ATP-dependent RNA hel 100.0 1.3E-26 2.9E-31 267.6 31.5 311 187-633 26-345 (629)
38 PRK01297 ATP-dependent RNA hel 100.0 1.1E-26 2.3E-31 263.6 29.4 319 187-642 107-442 (475)
39 KOG0354 DEAD-box like helicase 100.0 6.4E-26 1.4E-30 254.2 33.6 438 184-664 57-550 (746)
40 PRK11057 ATP-dependent DNA hel 100.0 2.9E-26 6.3E-31 266.0 31.4 308 185-634 21-337 (607)
41 TIGR01389 recQ ATP-dependent D 100.0 4.9E-26 1.1E-30 264.8 32.0 307 184-634 8-325 (591)
42 PLN03137 ATP-dependent DNA hel 99.9 7.8E-26 1.7E-30 264.4 30.4 313 185-637 456-784 (1195)
43 PTZ00424 helicase 45; Provisio 99.9 9.7E-26 2.1E-30 251.3 29.1 320 187-643 48-375 (401)
44 COG0513 SrmB Superfamily II DN 99.9 1.6E-25 3.5E-30 254.0 30.2 334 186-655 48-392 (513)
45 PRK13767 ATP-dependent helicas 99.9 3.2E-25 6.9E-30 266.2 30.8 324 188-637 31-395 (876)
46 KOG0347 RNA helicase [RNA proc 99.9 3.7E-27 8.1E-32 249.7 11.6 365 186-664 200-613 (731)
47 KOG0338 ATP-dependent RNA heli 99.9 1E-24 2.2E-29 229.5 26.5 332 183-652 197-541 (691)
48 TIGR03817 DECH_helic helicase/ 99.9 1.8E-24 4E-29 254.7 30.8 331 188-650 35-394 (742)
49 TIGR00643 recG ATP-dependent D 99.9 7.2E-24 1.6E-28 247.1 31.3 304 188-634 234-560 (630)
50 KOG1123 RNA polymerase II tran 99.9 4.8E-25 1E-29 231.0 18.1 342 187-648 300-659 (776)
51 TIGR00580 mfd transcription-re 99.9 4.4E-24 9.5E-29 253.7 25.7 309 187-642 449-770 (926)
52 PRK10917 ATP-dependent DNA hel 99.9 9.5E-24 2E-28 247.7 28.0 307 188-640 260-587 (681)
53 KOG0342 ATP-dependent RNA heli 99.9 2E-24 4.4E-29 227.4 18.9 316 186-641 101-436 (543)
54 KOG0345 ATP-dependent RNA heli 99.9 2.1E-23 4.5E-28 218.3 26.0 316 186-637 25-361 (567)
55 PRK11448 hsdR type I restricti 99.9 1.4E-23 3.1E-28 253.6 27.2 353 187-639 411-815 (1123)
56 KOG0328 Predicted ATP-dependen 99.9 4.9E-24 1.1E-28 209.3 16.4 317 188-643 48-374 (400)
57 PRK10689 transcription-repair 99.9 3.3E-23 7.2E-28 251.3 24.7 306 188-641 599-918 (1147)
58 KOG0343 RNA Helicase [RNA proc 99.9 7.5E-23 1.6E-27 217.2 23.5 328 188-655 90-434 (758)
59 PRK02362 ski2-like helicase; P 99.9 4.3E-22 9.3E-27 237.0 32.1 314 188-641 22-396 (737)
60 KOG0333 U5 snRNP-like RNA heli 99.9 1.6E-22 3.6E-27 213.8 24.1 340 187-642 265-624 (673)
61 COG0514 RecQ Superfamily II DN 99.9 1.9E-22 4E-27 224.2 24.8 315 184-642 12-337 (590)
62 KOG0350 DEAD-box ATP-dependent 99.9 3.6E-23 7.8E-28 217.7 17.0 370 188-656 158-552 (620)
63 TIGR01587 cas3_core CRISPR-ass 99.9 8.7E-22 1.9E-26 216.0 28.0 317 211-655 2-354 (358)
64 KOG0340 ATP-dependent RNA heli 99.9 2.2E-22 4.7E-27 203.9 20.8 312 187-635 27-357 (442)
65 KOG0348 ATP-dependent RNA heli 99.9 4.7E-22 1E-26 210.7 23.4 346 188-634 158-548 (708)
66 COG1201 Lhr Lhr-like helicases 99.9 1E-21 2.2E-26 225.9 26.9 388 187-717 20-436 (814)
67 PRK01172 ski2-like helicase; P 99.9 6.6E-21 1.4E-25 225.2 30.5 308 188-638 21-374 (674)
68 PRK00254 ski2-like helicase; P 99.9 8.3E-21 1.8E-25 225.4 31.3 317 188-642 22-388 (720)
69 PRK09751 putative ATP-dependen 99.9 3.7E-21 7.9E-26 234.7 27.5 96 529-627 243-371 (1490)
70 KOG0335 ATP-dependent RNA heli 99.9 4.7E-21 1E-25 205.8 21.9 317 184-637 91-441 (482)
71 KOG0341 DEAD-box protein abstr 99.9 5.1E-22 1.1E-26 202.5 12.5 322 189-649 192-535 (610)
72 KOG0326 ATP-dependent RNA heli 99.9 4.9E-22 1.1E-26 198.3 9.7 314 187-640 105-427 (459)
73 TIGR02621 cas3_GSU0051 CRISPR- 99.9 5E-20 1.1E-24 213.3 26.7 106 528-638 270-390 (844)
74 TIGR00348 hsdR type I site-spe 99.9 3.1E-19 6.7E-24 208.7 33.1 368 189-640 238-649 (667)
75 KOG0339 ATP-dependent RNA heli 99.9 1.3E-19 2.8E-24 190.9 26.1 319 189-645 245-578 (731)
76 KOG4284 DEAD box protein [Tran 99.9 8.4E-21 1.8E-25 204.6 17.3 312 188-639 46-377 (980)
77 KOG0336 ATP-dependent RNA heli 99.9 2.1E-20 4.6E-25 192.0 18.4 310 188-632 241-564 (629)
78 TIGR03714 secA2 accessory Sec 99.9 7.8E-20 1.7E-24 209.7 25.0 115 512-632 406-529 (762)
79 PHA02653 RNA helicase NPH-II; 99.8 3.1E-19 6.8E-24 205.7 27.7 327 184-645 155-517 (675)
80 PRK09200 preprotein translocas 99.8 2.4E-19 5.3E-24 207.6 26.7 131 511-651 409-547 (790)
81 TIGR00963 secA preprotein tran 99.8 1.2E-19 2.6E-24 206.8 22.7 117 513-634 388-511 (745)
82 PRK09401 reverse gyrase; Revie 99.8 5.4E-19 1.2E-23 215.4 29.5 296 185-628 76-432 (1176)
83 COG4096 HsdR Type I site-speci 99.8 3.6E-20 7.8E-25 207.5 15.5 351 181-640 157-546 (875)
84 PRK12898 secA preprotein trans 99.8 2.9E-18 6.3E-23 194.7 30.2 132 512-653 455-594 (656)
85 COG1200 RecG RecG-like helicas 99.8 1.6E-18 3.4E-23 192.3 25.0 305 188-633 261-584 (677)
86 KOG0332 ATP-dependent RNA heli 99.8 7.9E-19 1.7E-23 179.2 20.5 318 187-644 110-446 (477)
87 TIGR03158 cas3_cyano CRISPR-as 99.8 6E-18 1.3E-22 184.4 27.3 85 529-625 271-357 (357)
88 COG1205 Distinct helicase fami 99.8 1.3E-17 2.9E-22 197.4 28.2 331 189-651 70-431 (851)
89 TIGR01970 DEAH_box_HrpB ATP-de 99.8 8.3E-18 1.8E-22 198.4 25.5 108 530-643 209-337 (819)
90 KOG0346 RNA helicase [RNA proc 99.8 1.2E-17 2.7E-22 173.7 23.5 311 186-635 38-405 (569)
91 COG1202 Superfamily II helicas 99.8 1.3E-17 2.9E-22 178.4 20.6 318 187-642 214-553 (830)
92 KOG0344 ATP-dependent RNA heli 99.8 2.4E-18 5.2E-23 186.1 14.7 319 187-641 156-494 (593)
93 TIGR01054 rgy reverse gyrase. 99.8 2.3E-17 5E-22 201.5 24.3 132 185-328 74-213 (1171)
94 PRK05580 primosome assembly pr 99.8 1.4E-16 3.1E-21 186.5 30.1 155 187-353 142-305 (679)
95 PRK11664 ATP-dependent RNA hel 99.8 4.3E-17 9.4E-22 192.8 25.4 110 529-644 211-341 (812)
96 COG1204 Superfamily II helicas 99.8 1.7E-17 3.8E-22 193.8 21.8 309 189-629 31-395 (766)
97 KOG0334 RNA helicase [RNA proc 99.8 9.5E-18 2.1E-22 192.4 19.0 314 187-641 385-719 (997)
98 KOG0351 ATP-dependent DNA heli 99.8 1.3E-17 2.9E-22 196.0 19.5 317 184-637 259-589 (941)
99 PRK14701 reverse gyrase; Provi 99.8 9.9E-17 2.1E-21 199.7 26.2 132 187-327 77-213 (1638)
100 PRK09694 helicase Cas3; Provis 99.7 3.6E-16 7.7E-21 184.7 28.3 338 187-630 284-665 (878)
101 TIGR00595 priA primosomal prot 99.7 4.1E-16 8.8E-21 176.5 25.6 97 543-642 271-383 (505)
102 cd00079 HELICc Helicase superf 99.7 2.3E-17 5.1E-22 153.1 11.9 120 514-636 12-131 (131)
103 KOG0352 ATP-dependent DNA heli 99.7 6E-16 1.3E-20 160.4 22.3 323 192-637 23-359 (641)
104 KOG0327 Translation initiation 99.7 5.4E-17 1.2E-21 167.5 14.5 318 187-650 46-376 (397)
105 KOG0337 ATP-dependent RNA heli 99.7 5.8E-17 1.3E-21 168.0 14.6 317 188-642 42-368 (529)
106 PF04851 ResIII: Type III rest 99.7 1.8E-16 3.9E-21 156.3 15.7 152 189-353 3-183 (184)
107 COG4098 comFA Superfamily II D 99.7 2E-14 4.4E-19 146.0 30.2 313 187-643 95-417 (441)
108 PRK11131 ATP-dependent RNA hel 99.7 1.6E-15 3.4E-20 182.8 25.1 109 529-645 285-414 (1294)
109 COG1197 Mfd Transcription-repa 99.7 3.6E-15 7.8E-20 174.6 26.8 311 187-642 592-913 (1139)
110 PRK13104 secA preprotein trans 99.7 1.9E-15 4.2E-20 174.9 23.7 120 512-636 426-583 (896)
111 PRK12906 secA preprotein trans 99.7 3.7E-15 8.1E-20 171.8 25.9 116 513-633 423-546 (796)
112 PRK12904 preprotein translocas 99.7 1.3E-14 2.9E-19 168.0 28.6 401 185-636 77-569 (830)
113 COG4889 Predicted helicase [Ge 99.7 2.7E-15 5.9E-20 166.8 18.1 166 182-352 154-350 (1518)
114 KOG0353 ATP-dependent DNA heli 99.6 1.4E-14 3.1E-19 147.9 20.7 316 187-637 92-464 (695)
115 TIGR00631 uvrb excinuclease AB 99.6 9.8E-14 2.1E-18 160.9 29.9 133 512-650 424-563 (655)
116 TIGR01967 DEAH_box_HrpA ATP-de 99.6 2.4E-14 5.2E-19 173.3 25.1 109 529-645 278-407 (1283)
117 PF00271 Helicase_C: Helicase 99.6 4.2E-16 9.1E-21 131.2 7.2 78 548-628 1-78 (78)
118 smart00487 DEXDc DEAD-like hel 99.6 5.8E-15 1.3E-19 146.7 15.2 160 186-355 5-173 (201)
119 PRK13107 preprotein translocas 99.6 1.3E-13 2.8E-18 159.4 28.0 118 513-635 432-586 (908)
120 KOG0952 DNA/RNA helicase MER3/ 99.6 1.8E-13 4E-18 156.2 25.0 319 189-640 110-489 (1230)
121 PRK05298 excinuclease ABC subu 99.6 6.8E-13 1.5E-17 155.0 29.9 125 513-643 429-558 (652)
122 cd00046 DEXDc DEAD-like helica 99.6 4.7E-14 1E-18 131.8 14.1 137 210-352 2-144 (144)
123 PRK12900 secA preprotein trans 99.6 9.8E-13 2.1E-17 152.8 27.0 116 513-633 581-704 (1025)
124 smart00490 HELICc helicase sup 99.5 5.7E-14 1.2E-18 118.7 8.1 81 545-628 2-82 (82)
125 PRK12899 secA preprotein trans 99.5 1.6E-11 3.4E-16 142.6 30.0 119 513-636 551-677 (970)
126 KOG0951 RNA helicase BRR2, DEA 99.5 1.7E-12 3.6E-17 150.2 19.3 71 554-628 607-688 (1674)
127 PF00270 DEAD: DEAD/DEAH box h 99.5 7.1E-13 1.5E-17 128.9 13.7 153 191-353 1-163 (169)
128 cd00268 DEADc DEAD-box helicas 99.4 1.8E-12 4E-17 130.3 16.2 156 188-353 20-185 (203)
129 COG1203 CRISPR-associated heli 99.4 6.1E-12 1.3E-16 149.2 22.6 352 187-660 193-570 (733)
130 PRK12326 preprotein translocas 99.4 3.7E-11 7.9E-16 136.2 24.0 404 185-636 74-543 (764)
131 KOG0329 ATP-dependent RNA heli 99.4 5.7E-12 1.2E-16 123.1 14.6 130 188-327 63-198 (387)
132 COG0556 UvrB Helicase subunit 99.4 3.1E-10 6.8E-15 122.1 28.4 125 523-651 439-568 (663)
133 PF11496 HDA2-3: Class II hist 99.4 1.5E-11 3.3E-16 128.9 18.1 220 433-653 4-256 (297)
134 KOG0947 Cytoplasmic exosomal R 99.3 1.3E-10 2.8E-15 131.8 22.1 143 187-352 295-444 (1248)
135 COG4581 Superfamily II RNA hel 99.3 2.8E-10 6.1E-15 134.1 21.7 160 186-384 116-282 (1041)
136 PRK13103 secA preprotein trans 99.3 7E-10 1.5E-14 129.0 23.6 119 513-636 432-587 (913)
137 PRK12903 secA preprotein trans 99.2 1.8E-09 3.9E-14 124.3 25.0 120 512-636 408-535 (925)
138 KOG0349 Putative DEAD-box RNA 99.2 2.9E-10 6.2E-15 118.7 15.3 96 529-627 504-602 (725)
139 TIGR01407 dinG_rel DnaQ family 99.2 1.4E-08 2.9E-13 123.3 29.6 88 519-612 662-756 (850)
140 COG1110 Reverse gyrase [DNA re 99.1 1.5E-08 3.3E-13 116.8 26.4 133 183-327 76-216 (1187)
141 COG1198 PriA Primosomal protei 99.1 2.9E-08 6.2E-13 114.9 24.9 375 188-643 197-606 (730)
142 KOG0948 Nuclear exosomal RNA h 99.0 8.6E-09 1.9E-13 114.6 17.5 141 188-352 128-276 (1041)
143 CHL00122 secA preprotein trans 99.0 5.1E-08 1.1E-12 113.2 24.1 84 513-600 407-491 (870)
144 TIGR00596 rad1 DNA repair prot 99.0 2.6E-08 5.7E-13 117.5 19.5 150 510-664 266-537 (814)
145 PF13872 AAA_34: P-loop contai 98.9 4.9E-08 1.1E-12 100.7 18.6 235 185-451 33-302 (303)
146 PRK07246 bifunctional ATP-depe 98.9 4.9E-07 1.1E-11 108.5 28.4 86 521-612 638-725 (820)
147 KOG0922 DEAH-box RNA helicase 98.9 4.2E-07 9E-12 101.4 23.7 111 532-645 260-393 (674)
148 KOG0953 Mitochondrial RNA heli 98.9 3E-08 6.6E-13 107.4 14.4 101 528-632 356-466 (700)
149 KOG0949 Predicted helicase, DE 98.8 9.4E-08 2E-12 109.3 18.2 158 192-365 514-682 (1330)
150 KOG0924 mRNA splicing factor A 98.8 1.6E-07 3.4E-12 103.8 19.0 129 532-663 565-721 (1042)
151 COG1643 HrpA HrpA-like helicas 98.8 2.1E-07 4.5E-12 109.4 21.4 113 530-645 259-390 (845)
152 PRK12902 secA preprotein trans 98.8 1.8E-06 4E-11 100.4 27.6 84 513-600 422-506 (939)
153 PRK12901 secA preprotein trans 98.8 5.6E-07 1.2E-11 105.7 23.4 119 513-636 611-737 (1112)
154 TIGR00604 rad3 DNA repair heli 98.8 9.3E-07 2E-11 105.3 25.5 74 186-259 7-82 (705)
155 COG0610 Type I site-specific r 98.8 1.3E-07 2.8E-12 114.8 18.1 159 189-356 244-417 (962)
156 KOG0926 DEAH-box RNA helicase 98.8 1.5E-07 3.3E-12 105.5 15.9 153 202-369 265-441 (1172)
157 KOG1513 Nuclear helicase MOP-3 98.7 8.9E-07 1.9E-11 99.2 21.1 189 182-379 257-477 (1300)
158 TIGR03117 cas_csf4 CRISPR-asso 98.7 1.6E-06 3.6E-11 99.7 24.1 67 194-261 2-70 (636)
159 COG1199 DinG Rad3-related DNA 98.7 5.8E-06 1.2E-10 98.3 27.3 80 528-612 477-559 (654)
160 PRK08074 bifunctional ATP-depe 98.7 1.1E-05 2.3E-10 98.8 29.9 95 518-615 739-839 (928)
161 PF07652 Flavi_DEAD: Flaviviru 98.6 2.5E-07 5.4E-12 85.1 10.9 129 207-352 3-136 (148)
162 KOG0950 DNA polymerase theta/e 98.6 1.8E-06 3.9E-11 99.6 19.7 154 189-356 223-391 (1008)
163 PRK15483 type III restriction- 98.5 8.2E-07 1.8E-11 105.1 14.2 186 191-382 8-272 (986)
164 PF02399 Herpes_ori_bp: Origin 98.5 2.8E-06 6E-11 98.0 17.8 111 515-636 268-384 (824)
165 TIGR02562 cas3_yersinia CRISPR 98.5 5.5E-05 1.2E-09 89.8 27.5 171 190-360 409-642 (1110)
166 KOG0923 mRNA splicing factor A 98.5 6.8E-06 1.5E-10 91.1 18.5 108 531-646 474-610 (902)
167 KOG0920 ATP-dependent RNA heli 98.5 1.1E-05 2.4E-10 94.9 20.9 127 516-648 397-550 (924)
168 PRK11747 dinG ATP-dependent DN 98.4 9.2E-06 2E-10 96.3 19.5 89 517-612 521-616 (697)
169 smart00489 DEXDc3 DEAD-like he 98.3 1.1E-05 2.5E-10 85.3 15.2 72 189-260 8-84 (289)
170 smart00488 DEXDc2 DEAD-like he 98.3 1.1E-05 2.5E-10 85.3 15.2 72 189-260 8-84 (289)
171 PF13871 Helicase_C_4: Helicas 98.3 1.3E-06 2.8E-11 90.1 7.5 94 571-667 52-153 (278)
172 KOG4150 Predicted ATP-dependen 98.3 1E-05 2.3E-10 87.9 14.4 133 511-648 506-646 (1034)
173 PRK14873 primosome assembly pr 98.2 7.9E-05 1.7E-09 87.1 21.5 126 217-352 169-303 (665)
174 COG0653 SecA Preprotein transl 98.0 0.00038 8.2E-09 81.3 20.3 113 512-629 411-534 (822)
175 KOG0925 mRNA splicing factor A 98.0 0.00012 2.5E-09 78.9 14.2 63 584-648 314-393 (699)
176 PF13086 AAA_11: AAA domain; P 97.9 4.8E-05 1E-09 77.7 10.7 67 189-259 1-75 (236)
177 PF02562 PhoH: PhoH-like prote 97.7 0.00023 4.9E-09 70.8 10.0 152 190-358 5-161 (205)
178 PRK10536 hypothetical protein; 97.6 0.00021 4.5E-09 73.0 9.2 144 189-356 59-216 (262)
179 PF07517 SecA_DEAD: SecA DEAD- 97.6 0.00066 1.4E-08 70.3 12.9 123 185-326 73-209 (266)
180 PF13401 AAA_22: AAA domain; P 97.5 0.00018 3.9E-09 66.4 5.6 116 207-352 3-125 (131)
181 PF13604 AAA_30: AAA domain; P 97.3 0.0031 6.7E-08 62.9 12.5 131 189-354 1-132 (196)
182 PF13892 DBINO: DNA-binding do 97.3 0.00034 7.4E-09 63.7 4.8 32 81-112 104-135 (139)
183 KOG1132 Helicase of the DEAD s 97.2 0.0011 2.3E-08 76.8 9.2 51 183-233 15-69 (945)
184 KOG1803 DNA helicase [Replicat 97.2 0.0018 3.9E-08 72.2 10.1 66 187-257 183-249 (649)
185 TIGR00376 DNA helicase, putati 97.1 0.0031 6.7E-08 74.1 11.8 68 188-260 156-224 (637)
186 COG3587 Restriction endonuclea 97.1 0.0029 6.4E-08 73.0 10.8 134 208-351 74-241 (985)
187 PF09848 DUF2075: Uncharacteri 97.1 0.0023 4.9E-08 70.1 9.6 91 211-328 4-97 (352)
188 COG0553 HepA Superfamily II DN 96.9 0.00041 8.9E-09 85.5 2.5 182 187-374 82-289 (866)
189 PF13307 Helicase_C_2: Helicas 96.9 0.0028 6.1E-08 61.4 7.8 78 528-612 7-92 (167)
190 KOG0951 RNA helicase BRR2, DEA 96.9 0.067 1.5E-06 64.5 19.9 108 205-329 1156-1268(1674)
191 KOG1802 RNA helicase nonsense 96.9 0.0052 1.1E-07 69.0 10.2 138 188-335 409-589 (935)
192 PF12340 DUF3638: Protein of u 96.7 0.0033 7.2E-08 63.1 6.5 74 186-261 20-93 (229)
193 KOG1131 RNA polymerase II tran 96.7 0.0074 1.6E-07 65.9 9.1 63 184-246 11-74 (755)
194 TIGR01448 recD_rel helicase, p 96.6 0.014 3.1E-07 69.6 12.4 135 187-355 321-455 (720)
195 cd00009 AAA The AAA+ (ATPases 96.6 0.03 6.6E-07 51.8 12.3 106 208-354 19-131 (151)
196 TIGR02881 spore_V_K stage V sp 96.5 0.0098 2.1E-07 62.2 8.8 28 209-236 43-70 (261)
197 TIGR01447 recD exodeoxyribonuc 96.4 0.021 4.5E-07 66.4 11.2 140 192-355 148-298 (586)
198 PRK04296 thymidine kinase; Pro 96.4 0.021 4.6E-07 56.6 9.8 34 211-246 5-38 (190)
199 PRK09112 DNA polymerase III su 96.3 0.028 6.1E-07 61.2 11.2 143 194-352 28-181 (351)
200 smart00382 AAA ATPases associa 96.0 0.039 8.4E-07 50.5 9.2 44 208-253 2-45 (148)
201 COG3421 Uncharacterized protei 95.9 0.0088 1.9E-07 66.6 4.8 135 214-353 3-166 (812)
202 PRK14956 DNA polymerase III su 95.9 0.057 1.2E-06 60.5 11.1 41 194-234 23-66 (484)
203 PRK07003 DNA polymerase III su 95.9 0.09 1.9E-06 61.6 13.0 52 313-364 118-170 (830)
204 PLN03025 replication factor C 95.8 0.092 2E-06 56.6 12.5 49 314-362 99-148 (319)
205 TIGR03015 pepcterm_ATPase puta 95.8 0.071 1.5E-06 55.8 10.9 42 192-233 26-68 (269)
206 TIGR02880 cbbX_cfxQ probable R 95.7 0.03 6.4E-07 59.3 7.8 38 208-245 58-97 (284)
207 KOG1805 DNA replication helica 95.7 0.075 1.6E-06 62.7 11.3 150 189-354 669-831 (1100)
208 PRK12723 flagellar biosynthesi 95.7 0.17 3.7E-06 55.6 13.6 131 209-369 175-314 (388)
209 CHL00181 cbbX CbbX; Provisiona 95.6 0.038 8.1E-07 58.5 8.2 38 208-245 59-98 (287)
210 PRK10875 recD exonuclease V su 95.6 0.072 1.6E-06 62.1 10.9 142 190-355 153-304 (615)
211 PRK12402 replication factor C 95.6 0.1 2.2E-06 56.6 11.6 42 195-236 21-64 (337)
212 PF06862 DUF1253: Protein of u 95.3 0.57 1.2E-05 52.1 16.1 147 515-665 282-436 (442)
213 PRK07940 DNA polymerase III su 95.3 0.23 4.9E-06 55.0 13.1 25 211-235 39-63 (394)
214 PRK07994 DNA polymerase III su 95.3 0.27 5.8E-06 57.5 14.3 42 194-235 21-65 (647)
215 PRK11773 uvrD DNA-dependent he 95.3 1.5 3.2E-05 53.0 21.1 67 189-261 9-78 (721)
216 PF13177 DNA_pol3_delta2: DNA 95.2 0.22 4.7E-06 47.9 11.2 141 194-362 2-151 (162)
217 PRK05707 DNA polymerase III su 95.1 0.19 4.2E-06 54.1 11.6 137 189-352 3-145 (328)
218 PRK06526 transposase; Provisio 95.1 0.098 2.1E-06 54.3 9.0 53 196-258 90-142 (254)
219 PRK06645 DNA polymerase III su 95.0 0.15 3.3E-06 58.1 11.1 43 193-235 25-70 (507)
220 PRK12323 DNA polymerase III su 94.9 0.23 5E-06 57.5 12.1 25 211-235 41-65 (700)
221 PRK14960 DNA polymerase III su 94.9 0.34 7.4E-06 56.3 13.2 41 313-353 117-158 (702)
222 TIGR01075 uvrD DNA helicase II 94.8 2 4.3E-05 51.8 20.5 67 189-261 4-73 (715)
223 PRK14949 DNA polymerase III su 94.7 0.37 8.1E-06 57.7 13.4 42 313-354 118-160 (944)
224 PRK14961 DNA polymerase III su 94.7 0.23 5E-06 54.6 11.1 42 193-234 20-64 (363)
225 PRK14952 DNA polymerase III su 94.6 0.39 8.5E-06 55.7 13.2 41 194-234 18-61 (584)
226 PRK06871 DNA polymerase III su 94.6 0.56 1.2E-05 50.4 13.5 145 190-362 3-156 (325)
227 PRK14958 DNA polymerase III su 94.6 0.24 5.2E-06 56.8 11.3 42 194-235 21-65 (509)
228 PRK08181 transposase; Validate 94.4 0.44 9.6E-06 49.8 12.0 53 190-244 88-140 (269)
229 TIGR01073 pcrA ATP-dependent D 94.4 3.8 8.2E-05 49.6 21.6 53 189-247 4-58 (726)
230 PRK14963 DNA polymerase III su 94.4 0.32 6.9E-06 55.7 11.6 43 194-236 19-64 (504)
231 PF13245 AAA_19: Part of AAA d 94.4 0.15 3.3E-06 42.2 6.7 43 210-252 12-56 (76)
232 PRK08769 DNA polymerase III su 94.4 0.43 9.3E-06 51.2 11.9 154 188-364 3-164 (319)
233 PRK07993 DNA polymerase III su 94.3 0.68 1.5E-05 50.1 13.4 148 189-362 2-157 (334)
234 PRK14974 cell division protein 94.3 0.58 1.2E-05 50.6 12.7 47 210-258 142-192 (336)
235 PRK11889 flhF flagellar biosyn 94.2 0.64 1.4E-05 50.9 12.7 124 210-366 243-376 (436)
236 PRK06090 DNA polymerase III su 94.1 0.99 2.2E-05 48.4 14.0 150 189-365 3-160 (319)
237 PF05621 TniB: Bacterial TniB 94.1 0.53 1.1E-05 49.5 11.6 133 192-352 40-189 (302)
238 PRK07764 DNA polymerase III su 94.1 0.6 1.3E-05 56.4 13.7 24 211-234 40-63 (824)
239 PF13173 AAA_14: AAA domain 94.1 0.31 6.6E-06 44.8 9.0 41 314-355 61-101 (128)
240 PRK08691 DNA polymerase III su 94.1 1.2 2.6E-05 52.3 15.4 42 194-235 21-65 (709)
241 PRK08058 DNA polymerase III su 94.0 0.72 1.6E-05 49.9 13.0 132 193-352 10-149 (329)
242 PRK05703 flhF flagellar biosyn 94.0 0.52 1.1E-05 52.8 12.1 132 208-369 221-359 (424)
243 PRK07471 DNA polymerase III su 94.0 0.4 8.7E-06 52.5 11.0 142 193-352 23-181 (365)
244 PHA02533 17 large terminase pr 94.0 0.29 6.2E-06 56.4 10.2 153 188-361 58-219 (534)
245 PRK09111 DNA polymerase III su 93.9 0.38 8.2E-06 56.1 11.3 135 194-355 29-174 (598)
246 PRK14957 DNA polymerase III su 93.9 0.76 1.6E-05 52.9 13.4 41 194-234 21-64 (546)
247 smart00492 HELICc3 helicase su 93.8 0.38 8.2E-06 45.1 9.1 52 558-612 26-79 (141)
248 PF00448 SRP54: SRP54-type pro 93.8 0.35 7.5E-06 48.1 9.3 131 211-365 4-138 (196)
249 PRK00149 dnaA chromosomal repl 93.7 0.47 1E-05 53.8 11.4 58 193-250 129-190 (450)
250 PRK14951 DNA polymerase III su 93.7 0.6 1.3E-05 54.5 12.2 42 194-235 21-65 (618)
251 TIGR02928 orc1/cdc6 family rep 93.6 0.47 1E-05 52.1 10.9 44 191-234 20-66 (365)
252 PRK08451 DNA polymerase III su 93.6 0.6 1.3E-05 53.5 11.7 131 194-352 19-156 (535)
253 COG1875 NYN ribonuclease and A 93.5 0.19 4.2E-06 53.4 7.1 55 193-250 232-288 (436)
254 PRK14962 DNA polymerase III su 93.5 0.68 1.5E-05 52.6 12.1 24 211-234 39-62 (472)
255 PRK14964 DNA polymerase III su 93.5 1.1 2.5E-05 50.8 13.8 135 194-355 18-158 (491)
256 PRK06835 DNA replication prote 93.5 0.84 1.8E-05 49.2 12.2 49 188-236 159-211 (329)
257 PHA02544 44 clamp loader, smal 93.4 0.65 1.4E-05 49.9 11.3 41 314-354 100-142 (316)
258 PRK14948 DNA polymerase III su 93.2 0.59 1.3E-05 54.9 11.3 43 193-235 20-65 (620)
259 PRK07952 DNA replication prote 93.2 0.6 1.3E-05 48.1 10.1 62 192-259 79-144 (244)
260 smart00491 HELICc2 helicase su 93.1 0.4 8.8E-06 45.0 8.0 54 558-612 23-80 (142)
261 TIGR03420 DnaA_homol_Hda DnaA 93.1 0.62 1.4E-05 47.2 10.2 29 207-235 37-65 (226)
262 PRK14088 dnaA chromosomal repl 93.0 0.84 1.8E-05 51.5 11.9 37 210-246 132-168 (440)
263 PRK08116 hypothetical protein; 93.0 0.7 1.5E-05 48.4 10.5 37 208-246 114-150 (268)
264 PRK14969 DNA polymerase III su 92.9 1.2 2.6E-05 51.4 13.2 41 194-234 21-64 (527)
265 TIGR00362 DnaA chromosomal rep 92.9 0.88 1.9E-05 50.8 11.8 35 211-245 139-173 (405)
266 PRK14955 DNA polymerase III su 92.8 1.3 2.8E-05 49.3 12.9 133 194-351 21-165 (397)
267 PRK00440 rfc replication facto 92.8 1.5 3.3E-05 46.9 13.1 40 195-234 23-64 (319)
268 PRK05896 DNA polymerase III su 92.7 1.1 2.3E-05 52.0 12.2 42 194-235 21-65 (605)
269 PRK08084 DNA replication initi 92.7 1.2 2.6E-05 45.7 11.6 41 195-235 30-72 (235)
270 PRK14959 DNA polymerase III su 92.6 1.1 2.4E-05 52.2 12.1 37 198-234 25-64 (624)
271 PRK06964 DNA polymerase III su 92.6 0.98 2.1E-05 48.9 11.1 167 190-362 2-181 (342)
272 cd01124 KaiC KaiC is a circadi 92.5 0.35 7.6E-06 47.4 7.1 48 211-260 2-49 (187)
273 PHA03372 DNA packaging termina 92.5 0.28 6.1E-06 55.8 6.9 121 216-351 210-336 (668)
274 PRK14950 DNA polymerase III su 92.4 1.3 2.9E-05 51.8 12.8 42 193-234 20-64 (585)
275 TIGR02768 TraA_Ti Ti-type conj 92.4 0.83 1.8E-05 55.0 11.3 61 187-252 350-410 (744)
276 PRK10917 ATP-dependent DNA hel 92.2 1 2.3E-05 53.8 11.9 93 512-607 292-389 (681)
277 PRK14953 DNA polymerase III su 92.2 2.2 4.8E-05 48.7 13.9 42 193-234 20-64 (486)
278 PRK05986 cob(I)alamin adenolsy 92.2 0.7 1.5E-05 45.4 8.5 143 208-366 22-171 (191)
279 PRK05563 DNA polymerase III su 92.2 1.3 2.8E-05 51.6 12.1 24 211-234 41-64 (559)
280 COG3267 ExeA Type II secretory 92.0 1.7 3.7E-05 44.3 11.1 110 210-352 53-173 (269)
281 COG0470 HolB ATPase involved i 92.0 0.9 2E-05 48.8 10.1 119 208-351 23-147 (325)
282 TIGR00595 priA primosomal prot 91.8 1.2 2.7E-05 51.0 11.4 95 511-609 6-101 (505)
283 PF05876 Terminase_GpA: Phage 91.8 0.21 4.5E-06 58.0 5.1 165 187-364 14-191 (557)
284 PRK14087 dnaA chromosomal repl 91.5 0.99 2.1E-05 51.0 10.1 43 211-253 144-186 (450)
285 PHA03368 DNA packaging termina 91.5 0.52 1.1E-05 54.4 7.7 127 211-351 257-389 (738)
286 PF00580 UvrD-helicase: UvrD/R 91.5 0.35 7.5E-06 51.5 6.2 55 190-250 1-57 (315)
287 PRK06921 hypothetical protein; 91.4 1.2 2.6E-05 46.6 9.9 38 207-245 116-153 (266)
288 PRK09165 replicative DNA helic 91.3 0.98 2.1E-05 51.7 9.8 127 198-327 207-354 (497)
289 PRK00411 cdc6 cell division co 91.2 1.4 3.1E-05 48.8 11.0 46 191-236 35-83 (394)
290 PRK14086 dnaA chromosomal repl 91.2 1.5 3.2E-05 50.9 11.1 98 211-351 317-418 (617)
291 PRK08727 hypothetical protein; 91.1 0.8 1.7E-05 46.9 8.2 26 211-236 44-69 (233)
292 PRK14722 flhF flagellar biosyn 91.1 1.2 2.6E-05 48.8 9.7 124 207-361 136-266 (374)
293 TIGR03345 VI_ClpV1 type VI sec 91.1 1.1 2.4E-05 54.7 10.6 41 194-234 192-234 (852)
294 PRK08760 replicative DNA helic 91.1 1.1 2.4E-05 51.0 10.0 126 198-327 219-352 (476)
295 TIGR00678 holB DNA polymerase 91.0 2.8 6.1E-05 41.1 11.8 25 211-235 17-41 (188)
296 PRK06893 DNA replication initi 91.0 1.9 4.1E-05 44.1 10.7 26 211-236 42-67 (229)
297 PRK06647 DNA polymerase III su 90.7 2.2 4.7E-05 49.6 12.0 24 211-234 41-64 (563)
298 PRK14965 DNA polymerase III su 90.6 2 4.3E-05 50.2 11.6 132 194-351 21-157 (576)
299 PRK08533 flagellar accessory p 90.5 2.8 6E-05 42.9 11.4 52 206-259 22-73 (230)
300 PRK05580 primosome assembly pr 90.5 2.2 4.8E-05 50.9 12.2 95 512-610 172-267 (679)
301 PF06733 DEAD_2: DEAD_2; Inte 90.4 0.25 5.4E-06 48.1 3.5 39 290-328 118-159 (174)
302 cd01120 RecA-like_NTPases RecA 90.4 2.6 5.6E-05 39.6 10.6 36 212-249 3-38 (165)
303 PRK07133 DNA polymerase III su 90.3 2.1 4.5E-05 50.8 11.4 42 194-235 23-67 (725)
304 TIGR00708 cobA cob(I)alamin ad 90.3 1.5 3.3E-05 42.5 8.6 58 307-364 90-151 (173)
305 TIGR03689 pup_AAA proteasome A 90.3 1 2.3E-05 51.3 8.7 28 207-234 215-242 (512)
306 PF00308 Bac_DnaA: Bacterial d 90.2 3.4 7.4E-05 41.8 11.7 97 211-350 37-137 (219)
307 PRK12727 flagellar biosynthesi 90.2 3.7 8.1E-05 46.8 12.8 38 208-245 350-387 (559)
308 PRK06904 replicative DNA helic 90.1 2.6 5.7E-05 47.9 11.8 129 196-327 209-347 (472)
309 cd01121 Sms Sms (bacterial rad 89.9 1.4 2.9E-05 48.5 9.0 102 196-327 69-171 (372)
310 TIGR00643 recG ATP-dependent D 89.9 2.2 4.7E-05 50.6 11.4 94 512-607 266-363 (630)
311 COG1419 FlhF Flagellar GTP-bin 89.8 5.7 0.00012 43.5 13.3 135 208-370 203-341 (407)
312 cd01122 GP4d_helicase GP4d_hel 89.7 1.5 3.2E-05 46.0 8.9 51 206-257 28-78 (271)
313 PRK05642 DNA replication initi 89.6 1.9 4.2E-05 44.1 9.4 37 315-351 98-138 (234)
314 PRK13342 recombination factor 89.5 2.5 5.3E-05 47.4 10.9 23 209-231 37-59 (413)
315 TIGR00665 DnaB replicative DNA 89.4 1.8 4E-05 48.8 10.0 129 195-327 182-318 (434)
316 PRK08903 DnaA regulatory inact 89.3 2.5 5.4E-05 43.0 10.0 37 207-245 41-77 (227)
317 PTZ00112 origin recognition co 89.3 3 6.4E-05 50.1 11.4 45 190-234 759-807 (1164)
318 cd00984 DnaB_C DnaB helicase C 89.3 2.4 5.3E-05 43.4 10.0 118 206-328 11-137 (242)
319 PF06745 KaiC: KaiC; InterPro 89.1 1.7 3.6E-05 44.2 8.6 101 208-326 19-127 (226)
320 PF05970 PIF1: PIF1-like helic 89.0 2.1 4.5E-05 47.1 9.7 61 189-251 1-63 (364)
321 PRK14954 DNA polymerase III su 89.0 4.5 9.7E-05 47.5 12.8 42 194-235 21-65 (620)
322 PRK12422 chromosomal replicati 88.9 1.8 3.8E-05 48.9 9.2 35 210-246 143-177 (445)
323 cd00561 CobA_CobO_BtuR ATP:cor 88.9 3.2 7E-05 39.6 9.6 139 212-364 6-149 (159)
324 TIGR03880 KaiC_arch_3 KaiC dom 88.9 5.1 0.00011 40.6 11.9 50 210-261 18-67 (224)
325 PRK05748 replicative DNA helic 88.9 2.2 4.8E-05 48.3 10.1 129 195-327 190-327 (448)
326 KOG0989 Replication factor C, 88.8 1.8 3.9E-05 45.3 8.2 43 192-234 39-83 (346)
327 PRK04132 replication factor C 88.7 1.7 3.6E-05 52.6 9.1 105 215-363 573-680 (846)
328 PRK07276 DNA polymerase III su 88.6 6.8 0.00015 41.4 12.7 145 190-363 3-154 (290)
329 PRK09183 transposase/IS protei 88.5 2.3 5E-05 44.3 9.2 46 194-245 92-137 (259)
330 PRK13889 conjugal transfer rel 88.5 3.3 7.3E-05 51.0 11.7 129 187-356 344-474 (988)
331 PRK00771 signal recognition pa 88.5 2.9 6.4E-05 46.8 10.5 36 209-246 96-131 (437)
332 COG1435 Tdk Thymidine kinase [ 88.5 2.3 4.9E-05 41.7 8.3 109 212-351 8-118 (201)
333 PRK04195 replication factor C 88.4 5.2 0.00011 45.8 12.8 41 192-232 20-63 (482)
334 PRK11054 helD DNA helicase IV; 88.3 1 2.3E-05 53.5 7.1 69 187-261 194-265 (684)
335 COG0552 FtsY Signal recognitio 88.3 3.6 7.9E-05 43.7 10.3 123 212-359 143-276 (340)
336 KOG0952 DNA/RNA helicase MER3/ 88.3 0.39 8.4E-06 57.4 3.5 111 206-329 941-1061(1230)
337 TIGR03600 phage_DnaB phage rep 88.3 3.3 7.1E-05 46.5 10.9 129 196-328 182-319 (421)
338 PRK14873 primosome assembly pr 88.2 2.4 5.1E-05 50.2 10.0 94 512-609 170-265 (665)
339 PF00004 AAA: ATPase family as 88.2 1.7 3.7E-05 39.5 7.2 34 212-250 2-35 (132)
340 TIGR03877 thermo_KaiC_1 KaiC d 88.2 4.2 9.2E-05 41.7 10.8 52 207-260 20-71 (237)
341 PHA03333 putative ATPase subun 88.1 4.1 9E-05 47.5 11.4 150 190-353 170-332 (752)
342 PRK10865 protein disaggregatio 87.9 2.5 5.4E-05 51.8 10.3 39 196-234 185-225 (857)
343 PRK05973 replicative DNA helic 87.9 2.4 5.3E-05 43.4 8.6 59 200-260 56-114 (237)
344 PRK08506 replicative DNA helic 87.8 2.6 5.7E-05 48.0 9.7 128 195-327 179-315 (472)
345 PRK06731 flhF flagellar biosyn 87.7 11 0.00023 39.6 13.4 126 208-366 75-210 (270)
346 PRK08840 replicative DNA helic 87.6 3.5 7.5E-05 46.8 10.6 127 198-327 207-342 (464)
347 PRK07399 DNA polymerase III su 87.6 4.5 9.9E-05 43.4 10.9 43 194-236 9-54 (314)
348 COG1198 PriA Primosomal protei 87.4 1.2 2.7E-05 52.6 6.9 81 510-593 225-306 (730)
349 PRK05595 replicative DNA helic 87.4 1.4 3.1E-05 49.8 7.4 128 195-327 188-324 (444)
350 PRK08006 replicative DNA helic 87.4 3.8 8.3E-05 46.6 10.7 127 198-327 214-349 (471)
351 PTZ00293 thymidine kinase; Pro 87.4 2 4.2E-05 43.1 7.4 35 212-248 8-42 (211)
352 CHL00095 clpC Clp protease ATP 87.1 2.1 4.6E-05 52.3 9.1 28 207-234 199-226 (821)
353 PRK10867 signal recognition pa 86.8 6.3 0.00014 44.1 11.8 35 211-246 103-137 (433)
354 PRK13833 conjugal transfer pro 86.7 1.7 3.8E-05 46.6 7.1 132 187-362 126-257 (323)
355 PRK06305 DNA polymerase III su 86.7 5.4 0.00012 45.2 11.4 42 194-235 22-66 (451)
356 KOG0740 AAA+-type ATPase [Post 86.6 1.7 3.6E-05 48.1 6.9 47 208-259 186-232 (428)
357 KOG0991 Replication factor C, 86.5 2.2 4.8E-05 42.8 7.0 30 206-235 46-75 (333)
358 COG2256 MGS1 ATPase related to 86.3 3.7 8.1E-05 44.6 9.2 36 315-352 105-140 (436)
359 TIGR02397 dnaX_nterm DNA polym 86.2 6.6 0.00014 42.8 11.6 42 194-235 19-63 (355)
360 TIGR03346 chaperone_ClpB ATP-d 86.1 4.2 9.2E-05 50.0 10.9 41 194-234 178-220 (852)
361 PRK06067 flagellar accessory p 86.0 3.6 7.9E-05 42.0 8.9 51 208-260 25-75 (234)
362 PRK05564 DNA polymerase III su 86.0 8 0.00017 41.5 11.9 24 212-235 30-53 (313)
363 cd03115 SRP The signal recogni 86.0 10 0.00022 36.6 11.6 33 211-245 3-35 (173)
364 TIGR02639 ClpA ATP-dependent C 86.0 5 0.00011 48.5 11.3 29 207-235 202-230 (731)
365 PRK07004 replicative DNA helic 86.0 2.7 5.8E-05 47.7 8.5 128 196-327 201-337 (460)
366 PRK11823 DNA repair protein Ra 85.9 4.7 0.0001 45.5 10.5 63 196-260 67-130 (446)
367 PRK06321 replicative DNA helic 85.7 4.5 9.8E-05 46.0 10.1 127 197-327 215-349 (472)
368 TIGR03878 thermo_KaiC_2 KaiC d 85.7 6.9 0.00015 40.7 10.9 35 210-246 38-72 (259)
369 PRK12726 flagellar biosynthesi 85.6 9.9 0.00021 41.7 12.0 47 209-257 207-257 (407)
370 PRK10416 signal recognition pa 85.5 12 0.00026 40.3 12.7 33 212-246 118-150 (318)
371 KOG0780 Signal recognition par 85.4 2.5 5.3E-05 45.6 7.2 96 212-331 105-200 (483)
372 PRK05636 replicative DNA helic 85.2 4.2 9E-05 46.7 9.6 126 198-327 255-388 (505)
373 PRK14970 DNA polymerase III su 85.0 6.4 0.00014 43.3 10.8 42 194-235 22-66 (367)
374 PRK06995 flhF flagellar biosyn 84.6 5.4 0.00012 45.2 10.0 35 211-245 259-293 (484)
375 COG0464 SpoVK ATPases of the A 84.6 3.3 7.1E-05 47.6 8.6 67 189-260 249-323 (494)
376 PRK00080 ruvB Holliday junctio 84.5 15 0.00033 39.6 13.3 42 191-232 30-75 (328)
377 PRK11034 clpA ATP-dependent Cl 84.5 3.8 8.1E-05 49.4 9.2 28 207-234 206-233 (758)
378 TIGR00064 ftsY signal recognit 84.2 15 0.00033 38.5 12.6 34 211-246 75-108 (272)
379 COG1484 DnaC DNA replication p 84.2 3.1 6.7E-05 43.2 7.4 59 194-254 91-149 (254)
380 TIGR00959 ffh signal recogniti 84.0 9.3 0.0002 42.8 11.5 36 210-246 101-136 (428)
381 KOG0737 AAA+-type ATPase [Post 84.0 2 4.3E-05 46.1 5.8 52 204-260 123-174 (386)
382 TIGR03499 FlhF flagellar biosy 83.9 4.9 0.00011 42.4 8.8 39 208-246 194-232 (282)
383 PRK14721 flhF flagellar biosyn 83.7 7.8 0.00017 43.2 10.6 54 314-368 269-327 (420)
384 TIGR01425 SRP54_euk signal rec 83.7 17 0.00037 40.6 13.2 34 211-246 103-136 (429)
385 TIGR01074 rep ATP-dependent DN 83.7 5.1 0.00011 47.9 10.0 66 190-261 2-70 (664)
386 PF01695 IstB_IS21: IstB-like 83.6 1.5 3.3E-05 42.8 4.6 48 206-259 45-92 (178)
387 TIGR00767 rho transcription te 83.5 8.2 0.00018 42.6 10.4 30 206-235 166-195 (415)
388 PF13191 AAA_16: AAA ATPase do 83.4 3.3 7.2E-05 40.1 7.0 69 192-261 6-79 (185)
389 TIGR02782 TrbB_P P-type conjug 83.4 2.6 5.6E-05 44.9 6.5 47 199-245 123-169 (299)
390 PRK13894 conjugal transfer ATP 83.1 3.1 6.6E-05 44.8 7.0 58 188-248 131-188 (319)
391 PRK13826 Dtr system oriT relax 83.1 8.7 0.00019 47.9 11.6 128 187-357 379-510 (1102)
392 COG0305 DnaB Replicative DNA h 82.9 8.6 0.00019 42.8 10.4 129 198-328 186-320 (435)
393 COG3972 Superfamily I DNA and 82.8 23 0.00049 39.7 13.2 44 217-260 185-229 (660)
394 PRK08699 DNA polymerase III su 82.7 10 0.00022 40.9 10.9 45 190-234 2-47 (325)
395 PF03796 DnaB_C: DnaB-like hel 82.6 1.6 3.5E-05 45.4 4.6 118 206-328 17-144 (259)
396 COG1474 CDC6 Cdc6-related prot 82.6 10 0.00022 41.6 10.9 47 189-235 20-69 (366)
397 KOG0921 Dosage compensation co 82.6 11 0.00024 44.9 11.3 135 204-352 389-535 (1282)
398 PF13481 AAA_25: AAA domain; P 82.3 11 0.00023 37.0 10.2 54 208-261 32-93 (193)
399 PF07015 VirC1: VirC1 protein; 82.3 4.3 9.3E-05 41.1 7.2 40 217-258 11-52 (231)
400 COG0541 Ffh Signal recognition 82.0 5.3 0.00011 44.0 8.2 105 211-340 103-207 (451)
401 PRK07773 replicative DNA helic 81.7 2.6 5.5E-05 52.1 6.5 131 194-328 203-341 (886)
402 PRK12724 flagellar biosynthesi 81.4 11 0.00024 41.9 10.5 125 211-368 226-360 (432)
403 COG3973 Superfamily I DNA and 81.3 2.6 5.6E-05 48.0 5.7 61 190-255 213-277 (747)
404 PRK04328 hypothetical protein; 81.1 14 0.00031 38.1 11.0 51 208-260 23-73 (249)
405 PRK10689 transcription-repair 81.1 11 0.00024 47.7 11.7 94 512-607 631-728 (1147)
406 TIGR03881 KaiC_arch_4 KaiC dom 81.0 13 0.00027 37.7 10.4 51 207-259 19-69 (229)
407 PRK12377 putative replication 80.9 11 0.00024 38.9 9.9 41 209-251 102-142 (248)
408 PRK14971 DNA polymerase III su 80.7 18 0.00039 42.7 12.7 39 314-352 121-160 (614)
409 PF05127 Helicase_RecD: Helica 80.6 1.4 3.1E-05 42.8 3.1 121 213-352 2-123 (177)
410 PF01443 Viral_helicase1: Vira 80.5 4.7 0.0001 40.9 7.1 41 313-356 61-101 (234)
411 COG0593 DnaA ATPase involved i 80.3 7.8 0.00017 42.8 8.9 41 314-354 175-221 (408)
412 TIGR00580 mfd transcription-re 79.7 11 0.00025 46.4 11.0 95 512-608 482-580 (926)
413 COG1200 RecG RecG-like helicas 79.7 26 0.00056 41.0 13.0 91 513-607 294-390 (677)
414 PRK03992 proteasome-activating 79.6 4.2 9.2E-05 45.1 6.8 25 208-232 165-189 (389)
415 PF02606 LpxK: Tetraacyldisacc 79.6 9.8 0.00021 41.0 9.3 122 218-354 47-190 (326)
416 TIGR02012 tigrfam_recA protein 79.5 12 0.00026 40.2 9.9 54 197-252 42-97 (321)
417 CHL00176 ftsH cell division pr 79.4 7.8 0.00017 45.8 9.2 24 208-231 216-239 (638)
418 cd00983 recA RecA is a bacter 79.1 11 0.00025 40.4 9.5 42 208-251 55-96 (325)
419 TIGR00416 sms DNA repair prote 79.1 6.6 0.00014 44.4 8.2 64 195-260 80-144 (454)
420 cd02037 MRP-like MRP (Multiple 78.9 16 0.00036 35.0 10.0 112 212-369 4-118 (169)
421 TIGR02640 gas_vesic_GvpN gas v 78.8 5.6 0.00012 41.5 7.1 49 192-245 5-53 (262)
422 PRK10919 ATP-dependent DNA hel 78.8 3 6.4E-05 49.8 5.6 66 189-260 2-70 (672)
423 cd01128 rho_factor Transcripti 78.7 4.6 0.0001 41.7 6.3 26 206-231 14-39 (249)
424 PRK14723 flhF flagellar biosyn 78.6 12 0.00027 44.7 10.4 122 211-365 188-318 (767)
425 PRK13341 recombination factor 78.4 7.4 0.00016 46.7 8.7 23 209-231 53-75 (725)
426 TIGR01242 26Sp45 26S proteasom 78.4 8.3 0.00018 42.3 8.6 25 208-232 156-180 (364)
427 PRK12608 transcription termina 78.3 8.2 0.00018 42.1 8.2 43 192-235 118-160 (380)
428 PTZ00454 26S protease regulato 78.2 4.3 9.3E-05 45.1 6.3 37 207-248 178-214 (398)
429 CHL00095 clpC Clp protease ATP 78.1 1.4E+02 0.0031 36.6 19.9 43 193-235 513-566 (821)
430 PRK09376 rho transcription ter 77.0 14 0.0003 40.7 9.5 30 206-235 167-196 (416)
431 cd01125 repA Hexameric Replica 77.0 23 0.00051 36.2 11.0 38 210-247 3-50 (239)
432 PRK07414 cob(I)yrinic acid a,c 76.6 15 0.00033 35.7 8.7 133 212-360 25-165 (178)
433 cd01129 PulE-GspE PulE/GspE Th 76.4 5.4 0.00012 41.7 6.1 43 190-234 64-106 (264)
434 PHA00012 I assembly protein 76.3 6.9 0.00015 41.7 6.7 34 212-249 5-38 (361)
435 cd02034 CooC The accessory pro 76.3 38 0.00082 30.4 10.8 48 211-262 2-49 (116)
436 PF06564 YhjQ: YhjQ protein; 75.8 5.2 0.00011 41.0 5.6 96 214-324 8-127 (243)
437 TIGR01243 CDC48 AAA family ATP 75.6 7.4 0.00016 47.1 7.9 41 208-253 487-527 (733)
438 KOG0738 AAA+-type ATPase [Post 75.5 11 0.00023 41.0 7.9 47 209-260 246-292 (491)
439 TIGR02655 circ_KaiC circadian 75.5 13 0.00029 42.5 9.5 67 192-260 246-313 (484)
440 PRK09302 circadian clock prote 75.5 10 0.00022 43.8 8.6 51 209-261 274-324 (509)
441 TIGR01243 CDC48 AAA family ATP 75.4 13 0.00028 45.0 9.9 26 207-232 211-236 (733)
442 CHL00206 ycf2 Ycf2; Provisiona 75.3 8.7 0.00019 50.0 8.3 42 207-253 1629-1670(2281)
443 TIGR03346 chaperone_ClpB ATP-d 75.0 1.4E+02 0.003 37.0 18.6 24 211-234 598-621 (852)
444 COG0467 RAD55 RecA-superfamily 75.0 6.4 0.00014 40.9 6.3 104 206-324 21-134 (260)
445 PHA02542 41 41 helicase; Provi 74.8 15 0.00034 41.7 9.6 61 195-257 176-237 (473)
446 COG0003 ArsA Predicted ATPase 74.7 10 0.00022 40.7 7.7 26 217-244 11-36 (322)
447 PRK13709 conjugal transfer nic 74.7 18 0.0004 47.4 11.2 62 188-251 966-1029(1747)
448 PRK14712 conjugal transfer nic 74.5 17 0.00037 47.1 10.7 61 189-251 835-897 (1623)
449 COG1702 PhoH Phosphate starvat 74.2 10 0.00023 40.4 7.4 53 190-246 129-181 (348)
450 PF02572 CobA_CobO_BtuR: ATP:c 74.0 20 0.00043 34.8 8.8 139 212-364 7-150 (172)
451 PRK06749 replicative DNA helic 74.0 10 0.00022 42.6 7.9 60 198-259 176-235 (428)
452 KOG1133 Helicase of the DEAD s 73.9 2.3 5E-05 49.0 2.7 82 531-613 630-721 (821)
453 PF05729 NACHT: NACHT domain 73.9 18 0.00038 34.0 8.7 28 211-238 3-30 (166)
454 PRK09354 recA recombinase A; P 73.8 21 0.00046 38.8 9.9 40 211-252 63-102 (349)
455 PF12846 AAA_10: AAA-like doma 73.8 11 0.00023 39.7 7.7 46 209-256 2-47 (304)
456 PF00437 T2SE: Type II/IV secr 73.7 4.5 9.8E-05 42.3 4.8 45 199-245 118-162 (270)
457 TIGR02974 phageshock_pspF psp 73.2 90 0.002 33.7 14.7 47 205-253 19-65 (329)
458 COG1618 Predicted nucleotide k 72.6 10 0.00022 36.1 6.1 127 209-347 6-134 (179)
459 TIGR02237 recomb_radB DNA repa 71.8 33 0.00071 34.1 10.4 45 211-257 15-59 (209)
460 PF02456 Adeno_IVa2: Adenoviru 71.6 6.4 0.00014 41.3 5.0 98 208-326 87-208 (369)
461 KOG1133 Helicase of the DEAD s 71.6 7.4 0.00016 45.0 5.9 48 186-233 12-60 (821)
462 KOG1807 Helicases [Replication 71.2 12 0.00026 43.9 7.4 85 183-273 372-461 (1025)
463 PRK13849 putative crown gall t 70.9 16 0.00034 37.3 7.8 38 216-255 10-49 (231)
464 KOG0739 AAA+-type ATPase [Post 70.7 26 0.00057 36.7 9.1 48 209-261 167-214 (439)
465 PRK08939 primosomal protein Dn 70.4 15 0.00032 39.3 7.7 46 208-259 156-201 (306)
466 TIGR01241 FtsH_fam ATP-depende 69.9 12 0.00026 42.9 7.5 24 208-231 88-111 (495)
467 COG1066 Sms Predicted ATP-depe 69.7 32 0.00068 37.9 9.9 87 211-328 96-182 (456)
468 COG3598 RepA RecA-family ATPas 69.7 34 0.00074 36.4 9.7 41 206-246 87-135 (402)
469 PRK09435 membrane ATPase/prote 69.6 50 0.0011 35.7 11.6 49 212-260 60-113 (332)
470 PRK10923 glnG nitrogen regulat 69.4 63 0.0014 36.7 13.2 46 206-253 159-204 (469)
471 PRK13900 type IV secretion sys 69.0 8.9 0.00019 41.5 5.8 36 199-234 151-186 (332)
472 PRK15429 formate hydrogenlyase 68.4 83 0.0018 37.8 14.4 40 206-247 397-436 (686)
473 PRK05728 DNA polymerase III su 68.2 27 0.00059 32.7 8.2 86 512-612 11-96 (142)
474 PF04364 DNA_pol3_chi: DNA pol 67.9 17 0.00036 33.9 6.6 83 516-612 15-97 (137)
475 TIGR00365 monothiol glutaredox 67.8 40 0.00086 29.2 8.6 48 530-577 11-64 (97)
476 TIGR01547 phage_term_2 phage t 67.6 10 0.00022 42.1 6.1 37 212-248 5-42 (396)
477 TIGR00682 lpxK tetraacyldisacc 67.4 18 0.0004 38.7 7.7 20 217-236 39-58 (311)
478 KOG0744 AAA+-type ATPase [Post 66.7 25 0.00055 37.3 8.1 50 211-260 180-233 (423)
479 PRK09361 radB DNA repair and r 66.6 42 0.0009 33.8 9.9 35 211-247 26-60 (225)
480 TIGR02688 conserved hypothetic 66.6 16 0.00035 40.5 7.1 56 195-255 196-252 (449)
481 PF03237 Terminase_6: Terminas 66.1 47 0.001 35.8 11.0 62 293-356 78-141 (384)
482 TIGR02525 plasmid_TraJ plasmid 65.9 12 0.00027 41.0 6.2 38 207-244 148-185 (372)
483 PRK09302 circadian clock prote 65.5 48 0.0011 38.2 11.3 65 195-260 17-82 (509)
484 TIGR03574 selen_PSTK L-seryl-t 65.3 53 0.0011 33.8 10.5 31 212-244 3-33 (249)
485 CHL00195 ycf46 Ycf46; Provisio 65.1 11 0.00023 43.2 5.6 35 208-247 259-293 (489)
486 cd01393 recA_like RecA is a b 64.8 36 0.00077 34.2 9.1 39 211-249 22-64 (226)
487 PRK05917 DNA polymerase III su 64.6 64 0.0014 34.1 10.9 118 211-362 22-144 (290)
488 COG2812 DnaX DNA polymerase II 64.4 14 0.0003 42.2 6.3 42 194-235 21-65 (515)
489 cd01130 VirB11-like_ATPase Typ 64.2 16 0.00034 35.8 6.1 43 187-232 7-49 (186)
490 PRK05818 DNA polymerase III su 64.1 46 0.001 34.5 9.5 123 210-363 9-138 (261)
491 PF06068 TIP49: TIP49 C-termin 64.0 7.8 0.00017 42.0 4.0 52 194-248 32-87 (398)
492 PF13607 Succ_CoA_lig: Succiny 63.9 27 0.00059 32.5 7.2 86 532-639 3-90 (138)
493 PLN00020 ribulose bisphosphate 63.8 9.3 0.0002 41.6 4.5 45 208-257 148-192 (413)
494 TIGR02785 addA_Gpos recombinat 63.2 16 0.00035 46.9 7.3 61 190-256 2-63 (1232)
495 PRK11331 5-methylcytosine-spec 62.6 17 0.00037 40.8 6.5 37 198-234 184-220 (459)
496 PF13479 AAA_24: AAA domain 62.3 20 0.00043 36.1 6.5 31 294-325 47-79 (213)
497 TIGR02760 TraI_TIGR conjugativ 62.0 57 0.0012 44.0 12.2 62 187-252 427-488 (1960)
498 KOG2543 Origin recognition com 62.0 2.5E+02 0.0054 30.9 15.3 140 188-355 8-161 (438)
499 PRK10436 hypothetical protein; 60.5 13 0.00027 42.2 5.1 44 189-234 201-244 (462)
500 COG1222 RPT1 ATP-dependent 26S 59.8 23 0.0005 38.2 6.5 26 206-231 183-208 (406)
No 1
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=7.7e-130 Score=1057.95 Aligned_cols=603 Identities=48% Similarity=0.826 Sum_probs=510.1
Q ss_pred cccchHHHhhhHHHHhhHHHHHHHHHhhhhhhccccccccCCccccccCCCCCCccCcccchhhHHHHHHHHHhcccccc
Q 004347 82 DHLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNGVEQESEPVGKKKGRGSKRKAAPQCNTRKAKRAVAAMLTRSKEGE 161 (759)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (759)
+..+.++.+++++|+.+|+.|++|+..++.+.+.........+ .++++.+.+ ...........+...+..
T Consensus 69 ~~~~~~~~kr~e~Ll~~te~f~~f~~~~~~~~~~~~~~~~~~~---~~k~~~~~~-------~~~~~~~~~r~te~eed~ 138 (971)
T KOG0385|consen 69 EKMKADQAKRFEKLLKQTELFQHFIQPKAQKIDTKPLMELLRP---RKKNDAKKK-------ESSSGDVRHRKTEQEEDE 138 (971)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHccchhhcCcccccchhccc---hhhccchhc-------cccccccccccccccchH
Confidence 3345677899999999999999999998866543322100001 000000000 000000111111111111
Q ss_pred ccccccchhhhhhhhh-hhhhcccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCC
Q 004347 162 KTENENLSEEERVDKE-QRELVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHG 239 (759)
Q Consensus 162 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~-~~~~~ 239 (759)
+.......++...... .+..|.++.++.|||||++|++||+++|++|.|||||||||||||+|+|+++.+|.. .+..|
T Consensus 139 e~~~~~~~e~~~~~~~~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~G 218 (971)
T KOG0385|consen 139 ELLKEEEKEEETTVQNRFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPG 218 (971)
T ss_pred HHHHHhhhhhhhhhhccccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCC
Confidence 1111111111111111 111245667799999999999999999999999999999999999999999999998 78899
Q ss_pred CeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEE
Q 004347 240 PYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLV 319 (759)
Q Consensus 240 ~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lI 319 (759)
|+|||||+|++.||.+||.+|+|++++++|+|++.+|..+++..+.. ..|+|+||||++++++ +.+|.+++|.|+|
T Consensus 219 PfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~---~~fdV~iTsYEi~i~d-k~~lk~~~W~ylv 294 (971)
T KOG0385|consen 219 PFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLP---GRFDVCITSYEIAIKD-KSFLKKFNWRYLV 294 (971)
T ss_pred CeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhcc---CCCceEeehHHHHHhh-HHHHhcCCceEEE
Confidence 99999999999999999999999999999999999999998887643 4899999999999999 6999999999999
Q ss_pred EcCcccccChhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHH
Q 004347 320 VDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEE 399 (759)
Q Consensus 320 vDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~ 399 (759)
|||||||||.+|.+++.++.|.+.+||||||||+|||+.|||+|||||.|++|++.++|.+||.......
T Consensus 295 IDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~---------- 364 (971)
T KOG0385|consen 295 IDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEG---------- 364 (971)
T ss_pred echhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998763222
Q ss_pred HHHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHH
Q 004347 400 KRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNL 479 (759)
Q Consensus 400 ~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (759)
....+.+||.+|+||++||+|.+|+..|||++|.++||+||+.|+.+|..++.+.+..... .+......++|+
T Consensus 365 --~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~-----~~~~~k~kL~NI 437 (971)
T KOG0385|consen 365 --DQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNG-----EGKGEKTKLQNI 437 (971)
T ss_pred --CHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcc-----cccchhhHHHHH
Confidence 2357889999999999999999999999999999999999999999999999887765532 222357899999
Q ss_pred HHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEE
Q 004347 480 MVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCR 559 (759)
Q Consensus 480 l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~ 559 (759)
+|+||+||||||||.+. .+...|.+.++++.+|||+.+|+++|++++++||||||||||+.|+|+|++||..+||.|||
T Consensus 438 ~mQLRKccnHPYLF~g~-ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycR 516 (971)
T KOG0385|consen 438 MMQLRKCCNHPYLFDGA-EPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCR 516 (971)
T ss_pred HHHHHHhcCCccccCCC-CCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEe
Confidence 99999999999999994 44478999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEe
Q 004347 560 IDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLA 639 (759)
Q Consensus 560 l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli 639 (759)
|||+++.++|...|+.||.+++.++|||+||+|||+||||++||+||+||++|||++++||++|||||||+|+|+|||||
T Consensus 517 iDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLi 596 (971)
T KOG0385|consen 517 LDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLI 596 (971)
T ss_pred ecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEe
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccCCHHHHHHhhcchhhhhhhhhccCCCHHHHHHHHhhhhc
Q 004347 640 TAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTDIGEEDLERVLDRADL 719 (759)
Q Consensus 640 ~~~TvEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~~~~~~~~~~~~~~~e~l~~~l~~~~~ 719 (759)
|++|||++|++|+..|++|.+.||++|..... .++ .+..+++..|++.+.+......++.+++ ||+++|.++..
T Consensus 597 tentVEe~IveRA~~KL~Ld~~VIq~g~l~~~--~~~---~~~k~~~l~~~r~g~~~~f~~~es~~~d-Did~il~~~e~ 670 (971)
T KOG0385|consen 597 TENTVEEKIVERAAAKLRLDKLVIQQGRLEEQ--KSN---GLGKDELLNLLRFGADPVFESKESTISD-DIDRILERGEE 670 (971)
T ss_pred ccchHHHHHHHHHHHHhchhhhhhccCchhhh--hcc---ccchHHHHHHHHcCchhhhhhcccccch-hHHHHHHhhhh
Confidence 99999999999999999999999999843221 121 3668899999999988877777778888 99999999875
Q ss_pred ccC
Q 004347 720 IAG 722 (759)
Q Consensus 720 ~~~ 722 (759)
-..
T Consensus 671 kt~ 673 (971)
T KOG0385|consen 671 KTA 673 (971)
T ss_pred hcc
Confidence 433
No 2
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=4e-109 Score=935.66 Aligned_cols=518 Identities=43% Similarity=0.719 Sum_probs=466.8
Q ss_pred cccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC-CCCCeEEEECCccHHHHHHHHHHh
Q 004347 182 VSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-LHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 182 ~~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~-~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
|.+..|.+||+||++|++||+..|.++.|||||||||||||+|+|+|+.+|...+ ..||+|||+|.|++.+|++||..|
T Consensus 363 p~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w 442 (1373)
T KOG0384|consen 363 PEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETW 442 (1373)
T ss_pred ccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHH
Confidence 4677778999999999999999999999999999999999999999999999866 889999999999999999999999
Q ss_pred CCCceEEEEeCChhHHHHHHHhcCCCCCC---CCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHH
Q 004347 261 VPSVSAIIYHGSKKERDEIRRKHMPRAIG---PKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKEL 337 (759)
Q Consensus 261 ~p~~~~~~~~g~~~~r~~~~~~~~~~~~~---~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l 337 (759)
+ .+++++|+|+...|+.++.+.+..... -+|+++||||++++.+ ..+|..++|.+++||||||+||..|.++..|
T Consensus 443 ~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD-k~~L~~i~w~~~~vDeahrLkN~~~~l~~~l 520 (1373)
T KOG0384|consen 443 T-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD-KAELSKIPWRYLLVDEAHRLKNDESKLYESL 520 (1373)
T ss_pred h-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc-HhhhccCCcceeeecHHhhcCchHHHHHHHH
Confidence 9 999999999999999999888754432 2799999999999999 4899999999999999999999999999999
Q ss_pred hcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 338 KYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 338 ~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
..+...||+++||||+||++.|||+||+||+|+.|.+..+|...|+. .....+..||.+|+|||
T Consensus 521 ~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~----------------~~e~~~~~L~~~L~P~~ 584 (1373)
T KOG0384|consen 521 NQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE----------------ETEEQVRKLQQILKPFL 584 (1373)
T ss_pred HHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc----------------hhHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999887732 12367889999999999
Q ss_pred hhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 418 LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
|||++.||++.||++.|+++.|.||+.|+.+|+.++.+++..+-. ...+....++|++|.|++|||||||+.++.
T Consensus 585 lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtK-----G~~g~~~~lLNimmELkKccNHpyLi~gae 659 (1373)
T KOG0384|consen 585 LRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTK-----GAKGSTPSLLNIMMELKKCCNHPYLIKGAE 659 (1373)
T ss_pred HHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhc-----cCCCCCchHHHHHHHHHHhcCCccccCcHH
Confidence 999999999999999999999999999999999999998766522 222334789999999999999999997764
Q ss_pred cCC-------CCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHH
Q 004347 498 SDS-------CFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERK 570 (759)
Q Consensus 498 ~~~-------~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~ 570 (759)
..- ........++.+|||+.+|++||.++.+.||||||||||+.|||+|.+||..+||+|-||||++..+.|+
T Consensus 660 e~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq 739 (1373)
T KOG0384|consen 660 EKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQ 739 (1373)
T ss_pred HHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHH
Confidence 211 1123567789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHH
Q 004347 571 RQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILK 650 (759)
Q Consensus 571 ~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~ 650 (759)
..|++||+++++-||||+||||||+||||++||||||||++|||+.++||+.|||||||++.|.||||||++|||+.|++
T Consensus 740 ~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilE 819 (1373)
T KOG0384|consen 740 QAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILE 819 (1373)
T ss_pred HHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccccccccccccccCCHHHHHHhhcchhhhhhhh---hccCCCHHHHHHHHhhhhcccCCCC
Q 004347 651 RAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKM---IQTDIGEEDLERVLDRADLIAGCLD 725 (759)
Q Consensus 651 ~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~~~~~~~~---~~~~~~~e~l~~~l~~~~~~~~~~~ 725 (759)
|+..|+-|.++||+.+...+..... ..++.+||.++|+.++.+-.+- ......++||++||.|....+....
T Consensus 820 RAk~KmvLD~aVIQ~m~t~~~~s~~---~~f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae~~~t~~~ 894 (1373)
T KOG0384|consen 820 RAKLKMVLDHAVIQRMDTKGKTSKS---NPFSKEELSAILKFGAYELFKEEENEESKFCEMDIDEILERAETRITEES 894 (1373)
T ss_pred HHHHHhhhHHHHHHhhccccccCCC---CCCCHHHHHHHHHhchHHhhhccccccccccccCHHHHHhhccccccccc
Confidence 9999999999999988763333332 3799999999999988654332 2235667899999999866555443
No 3
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=8.2e-107 Score=866.39 Aligned_cols=467 Identities=45% Similarity=0.789 Sum_probs=422.1
Q ss_pred cccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 182 VSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 182 ~~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~-~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
-|.+..|+|+.||++|++||..+|.+|.|||||||||||||+|+|+++++|.+ +..+||||||+|.|++.||.+||.+|
T Consensus 560 qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEisrF 639 (1185)
T KOG0388|consen 560 QPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEISRF 639 (1185)
T ss_pred CchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHHHHh
Confidence 36777899999999999999999999999999999999999999999999998 67899999999999999999999999
Q ss_pred CCCceEEEEeCChhHHHHHHHhcCCCC---CCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHH
Q 004347 261 VPSVSAIIYHGSKKERDEIRRKHMPRA---IGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKEL 337 (759)
Q Consensus 261 ~p~~~~~~~~g~~~~r~~~~~~~~~~~---~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l 337 (759)
+|.++++.|.|+..+|..+++...++. ....|+|+||||+++..+. ++|+.++|+|+|+|||+.||.+.|..++.|
T Consensus 640 lP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe-ky~qkvKWQYMILDEAQAIKSSsS~RWKtL 718 (1185)
T KOG0388|consen 640 LPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE-KYLQKVKWQYMILDEAQAIKSSSSSRWKTL 718 (1185)
T ss_pred CccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH-HHHHhhhhhheehhHHHHhhhhhhhHHHHH
Confidence 999999999999999998887543332 3357999999999999995 899999999999999999999999999999
Q ss_pred hcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 338 KYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 338 ~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
..|+|++||||||||+||++.|||+||+|++|.+|++..+|..||+..+....... .....+.+.+||.||+|||
T Consensus 719 LsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~-----~tlneqqL~RLH~ILKPFM 793 (1185)
T KOG0388|consen 719 LSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMN-----TTLNEQQLQRLHAILKPFM 793 (1185)
T ss_pred hhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhc-----CCcCHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999987654322111 1223477899999999999
Q ss_pred hhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 418 LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
|||.|++|..+|..|.++.++|.+|..|..+|+.+..... ...+.+++|+||++||||.||....
T Consensus 794 LRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS---------------~~E~~~~vmQlrKVCNHPdLFer~e 858 (1185)
T KOG0388|consen 794 LRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS---------------SMEMENLVMQLRKVCNHPDLFERLE 858 (1185)
T ss_pred HHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHHhcCChHHHhhcC
Confidence 9999999999999999999999999999999999866542 1233469999999999999984321
Q ss_pred cCC-----------------------------------------------------------------------------
Q 004347 498 SDS----------------------------------------------------------------------------- 500 (759)
Q Consensus 498 ~~~----------------------------------------------------------------------------- 500 (759)
...
T Consensus 859 ~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~ 938 (1185)
T KOG0388|consen 859 PRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYV 938 (1185)
T ss_pred CcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcc
Confidence 000
Q ss_pred ----------------------------------------------------------------------------CCCC
Q 004347 501 ----------------------------------------------------------------------------CFYP 504 (759)
Q Consensus 501 ----------------------------------------------------------------------------~~~~ 504 (759)
...|
T Consensus 939 ~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~P 1018 (1185)
T KOG0388|consen 939 FRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVP 1018 (1185)
T ss_pred cccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecC
Confidence 0112
Q ss_pred chHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCce
Q 004347 505 PVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 584 (759)
Q Consensus 505 ~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 584 (759)
++..++..|||+..|+.+|.++.+.||+||+|.|++.|+++|++||..+||+|.|+||+.+..+|.+++.+|+. +++|
T Consensus 1019 pm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdiF 1096 (1185)
T KOG0388|consen 1019 PMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA--SDIF 1096 (1185)
T ss_pred cHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--CceE
Confidence 34455777899999999999999999999999999999999999999999999999999999999999999997 8999
Q ss_pred EEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhc
Q 004347 585 IFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIG 664 (759)
Q Consensus 585 v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~vi~ 664 (759)
|||+||+|||+||||++||+|||||++|||..+.||++|+||.|||+.|+||||++.|||||+|+.++.+|....+.|+.
T Consensus 1097 vFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~ 1176 (1185)
T KOG0388|consen 1097 VFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMH 1176 (1185)
T ss_pred EEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccc
Q 004347 665 KGQFHQE 671 (759)
Q Consensus 665 ~~~~~~~ 671 (759)
++.|.++
T Consensus 1177 G~~~qg~ 1183 (1185)
T KOG0388|consen 1177 GNIFQGE 1183 (1185)
T ss_pred CCcccCC
Confidence 8877543
No 4
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=5.1e-100 Score=895.71 Aligned_cols=506 Identities=46% Similarity=0.833 Sum_probs=453.1
Q ss_pred ccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCeEEEECCccHHHHHHHHHHhC
Q 004347 183 SLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISRFV 261 (759)
Q Consensus 183 ~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~-~~~~~~~LIV~P~sll~~W~~E~~~~~ 261 (759)
|....++|||||+.|++||+.++.++.||||||+||||||+|+|+++.++.. .+..+|+|||||.+++.||.+||.+|+
T Consensus 163 P~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 163 PSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFC 242 (1033)
T ss_pred ChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHHHC
Confidence 4444479999999999999999999999999999999999999999999876 677899999999999999999999999
Q ss_pred CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCC
Q 004347 262 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIP 341 (759)
Q Consensus 262 p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~ 341 (759)
|...+++|+|+...|..++...+ ....++|+||||+++.++. ..|..++|++|||||||+|||..++++++++.++
T Consensus 243 p~l~v~~~~G~~~eR~~~~~~~~---~~~~~dVvITSYe~l~~e~-~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~ 318 (1033)
T PLN03142 243 PVLRAVKFHGNPEERAHQREELL---VAGKFDVCVTSFEMAIKEK-TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFS 318 (1033)
T ss_pred CCCceEEEeCCHHHHHHHHHHHh---cccCCCcceecHHHHHHHH-HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhh
Confidence 99999999999988876655433 2247899999999999884 7888999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Q 004347 342 IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRM 421 (759)
Q Consensus 342 ~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~ 421 (759)
+.+||+|||||++|++.|||+||+||.|++|++...|..||....... ....+..|+.+++||++||+
T Consensus 319 a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~------------~~e~i~~L~~~L~pf~LRR~ 386 (1033)
T PLN03142 319 TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEND------------QQEVVQQLHKVLRPFLLRRL 386 (1033)
T ss_pred cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccc------------hHHHHHHHHHHhhHHHhhhh
Confidence 999999999999999999999999999999999999999997643211 13567889999999999999
Q ss_pred hhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCC
Q 004347 422 KSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSC 501 (759)
Q Consensus 422 k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~ 501 (759)
+++|...||++.+.+++|.||+.|+.+|..++........ .......+++++++||++|+||+++.......
T Consensus 387 KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~-------~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~- 458 (1033)
T PLN03142 387 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN-------AGGERKRLLNIAMQLRKCCNHPYLFQGAEPGP- 458 (1033)
T ss_pred HHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHHHHHHHhCCHHhhhcccccC-
Confidence 9999999999999999999999999999999877554321 12235578899999999999999997765433
Q ss_pred CCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCC
Q 004347 502 FYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNS 581 (759)
Q Consensus 502 ~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 581 (759)
.+...+.++..|+|+.+|+++|..+...|+||||||||+.++++|+++|..+|++|++|||+++..+|+.++++||.+++
T Consensus 459 ~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s 538 (1033)
T PLN03142 459 PYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGS 538 (1033)
T ss_pred cccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccC
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Q 004347 582 SYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHV 661 (759)
Q Consensus 582 ~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~ 661 (759)
..+|||+||+|||+||||+.|++||+||+||||+.+.||+||+|||||+++|+||||++.||||++|++++..|..|...
T Consensus 539 ~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~ 618 (1033)
T PLN03142 539 EKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDAL 618 (1033)
T ss_pred CceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCccccccccccccccCCHHHHHHhhcchhhhhhhhhccCCCHHHHHHHHhhhhc
Q 004347 662 VIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTDIGEEDLERVLDRADL 719 (759)
Q Consensus 662 vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~~~~~~~~~~~~~~~e~l~~~l~~~~~ 719 (759)
|++.|.+... ..++.++|.+|++.+.+.........++++||+.||+|+..
T Consensus 619 Vi~~g~~~~~-------~~~~~~eL~~ll~~ga~~~f~~~~~~~~~~did~il~~~~~ 669 (1033)
T PLN03142 619 VIQQGRLAEQ-------KTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEE 669 (1033)
T ss_pred HHhcCccccc-------ccCCHHHHHHHHHhChHHhhhccCCCCCHHHHHHHHHhcHH
Confidence 9998875422 25778999999998876554434457899999999999753
No 5
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.9e-102 Score=860.81 Aligned_cols=519 Identities=45% Similarity=0.752 Sum_probs=460.9
Q ss_pred cccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 182 VSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 182 ~~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~-~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
|..+.||+|++||+.|+.||+++|.++.|||||||||||||+|+|++|.+|.+ .+..||+|||||+++|.||..||.+|
T Consensus 387 ps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kW 466 (1157)
T KOG0386|consen 387 PSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKW 466 (1157)
T ss_pred cchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhcccc
Confidence 46778999999999999999999999999999999999999999999999998 66789999999999999999999999
Q ss_pred CCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHh-c
Q 004347 261 VPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELK-Y 339 (759)
Q Consensus 261 ~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~-~ 339 (759)
.|++..+.|.|++..|..+.... ...+|+|++|||+.++.+ +.+|.++.|.|+||||+|||||..|++...+. .
T Consensus 467 aPSv~~i~YkGtp~~R~~l~~qi----r~gKFnVLlTtyEyiikd-k~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~ 541 (1157)
T KOG0386|consen 467 APSVQKIQYKGTPQQRSGLTKQQ----RHGKFNVLLTTYEYIIKD-KALLSKISWKYMIIDEGHRMKNAICKLTDTLNTH 541 (1157)
T ss_pred ccceeeeeeeCCHHHHhhHHHHH----hcccceeeeeeHHHhcCC-HHHHhccCCcceeecccccccchhhHHHHHhhcc
Confidence 99999999999999998776543 337999999999999998 68999999999999999999999999999999 7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 004347 340 IPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLR 419 (759)
Q Consensus 340 l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lR 419 (759)
+.+.+|++|||||+||++.|||+||||+.|.+|.+...|..||..+....+ .+....+....-.+.+||++|+||++|
T Consensus 542 y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantG--ek~eLteEEtlLIIrRLHkVLRPFlLR 619 (1157)
T KOG0386|consen 542 YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTG--EKVELTEEETLLIIRRLHKVLRPFLLR 619 (1157)
T ss_pred ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcC--CcccccchHHHHHHHHHHHhhhHHHHH
Confidence 899999999999999999999999999999999999999999987755444 223344455567899999999999999
Q ss_pred hhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccC
Q 004347 420 RMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSD 499 (759)
Q Consensus 420 R~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~ 499 (759)
|.+++|+..||.|.+.++.|.||..|+.+|..+......-. ....+.+....++|.+|+||++||||+++.....+
T Consensus 620 RlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~----d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~ 695 (1157)
T KOG0386|consen 620 RLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLK----DTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENS 695 (1157)
T ss_pred hhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCc----CchhccccchhhhhHhHHHHHhcCCchhhhhhccc
Confidence 99999999999999999999999999999999864321100 00234555778999999999999999999766544
Q ss_pred CCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhcc
Q 004347 500 SCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV 579 (759)
Q Consensus 500 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 579 (759)
....-....++..|||+.+|+++|+++++.||+||.|||++.+++++++||..+++.|.|+||+|+.++|-.+++.||.+
T Consensus 696 ~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~P 775 (1157)
T KOG0386|consen 696 YTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAP 775 (1157)
T ss_pred cccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCC
Confidence 43333337899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHH
Q 004347 580 NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLE 659 (759)
Q Consensus 580 ~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~ 659 (759)
++.+++||+||+|||+|+|||.||+||+||++|||..++||.+|+|||||++.|+|+|+++.+++||.|+.++..|+.++
T Consensus 776 ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d 855 (1157)
T KOG0386|consen 776 DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVD 855 (1157)
T ss_pred CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccccccccccccccCCHHHHHHhhcchhhhhhhhhccCCCHHHHHHHHhhhhc
Q 004347 660 HVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTDIGEEDLERVLDRADL 719 (759)
Q Consensus 660 ~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~~~~~~~~~~~~~~~e~l~~~l~~~~~ 719 (759)
..||+.|.|++..+.... ..=|.+++..+.+.++ ...-++++|..+|.|++.
T Consensus 856 ~kviqag~fdn~st~~eR-----~~~Le~~l~~~~~~~~---~~v~~~~~ln~~larsee 907 (1157)
T KOG0386|consen 856 GKVIQAGKFDNKSTAEER-----EMFLEQLLEMEGDEEE---EEVPDDEVLNSMLARSEE 907 (1157)
T ss_pred HhhhhcccccCCCcHHHH-----HHHHHHHHhCCCcccc---ccCCcHHHHHHHHhcchH
Confidence 999999999876544321 1223345555444333 345678889999999876
No 6
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.5e-99 Score=841.79 Aligned_cols=480 Identities=43% Similarity=0.744 Sum_probs=427.6
Q ss_pred hhcccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCeEEEECCccHHHHHHHHH
Q 004347 180 ELVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEIS 258 (759)
Q Consensus 180 ~~~~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~-~~~~~~~LIV~P~sll~~W~~E~~ 258 (759)
.++|.+..|.||.||..|+.||..+|+++.|||||||||||||+|+|++++||.. .|.+||+|||||++++-||.-||+
T Consensus 606 tpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElK 685 (1958)
T KOG0391|consen 606 TPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELK 685 (1958)
T ss_pred cCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHh
Confidence 4578999999999999999999999999999999999999999999999999975 889999999999999999999999
Q ss_pred HhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHh
Q 004347 259 RFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELK 338 (759)
Q Consensus 259 ~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~ 338 (759)
+|||+++++.|+|+..+|...|+.+. ..+.|+|+||||..+..+. ..|....|.|+|+||||+|||..++.|++|.
T Consensus 686 RwcPglKILTYyGs~kErkeKRqgW~---kPnaFHVCItSYklv~qd~-~AFkrkrWqyLvLDEaqnIKnfksqrWQAll 761 (1958)
T KOG0391|consen 686 RWCPGLKILTYYGSHKERKEKRQGWA---KPNAFHVCITSYKLVFQDL-TAFKRKRWQYLVLDEAQNIKNFKSQRWQALL 761 (1958)
T ss_pred hhCCcceEeeecCCHHHHHHHhhccc---CCCeeEEeehhhHHHHhHH-HHHHhhccceeehhhhhhhcchhHHHHHHHh
Confidence 99999999999999999988766553 2357999999999999996 7788889999999999999999999999999
Q ss_pred cCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHh
Q 004347 339 YIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 418 (759)
Q Consensus 339 ~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~l 418 (759)
.+++.+||||||||+||++.|||+|++||+|..|.+.+.|..||+.+-....+.. .......+.+||++++||+|
T Consensus 762 nfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgs-----qeyn~klV~RLHkVlrPfiL 836 (1958)
T KOG0391|consen 762 NFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGS-----QEYNHKLVIRLHKVLRPFIL 836 (1958)
T ss_pred ccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccc-----hhhchHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999997754333222 22335789999999999999
Q ss_pred hhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc-
Q 004347 419 RRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF- 497 (759)
Q Consensus 419 RR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~- 497 (759)
||+|.||++.||.|.|++|+|.||..|+.+|+.++.+.-... ....+...++.|++|+||++||||.||+..-
T Consensus 837 RRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKe------tLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv 910 (1958)
T KOG0391|consen 837 RRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKE------TLKSGHFMSVLNILMQLRKVCNHPNLFEPRPV 910 (1958)
T ss_pred HHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhh------HhhcCchhHHHHHHHHHHHHcCCCCcCCCCCC
Confidence 999999999999999999999999999999999876532211 1234456788999999999999999872100
Q ss_pred --------------------------------------------------------------------------------
Q 004347 498 -------------------------------------------------------------------------------- 497 (759)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (759)
T Consensus 911 ~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~ 990 (1958)
T KOG0391|consen 911 GSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAP 990 (1958)
T ss_pred CcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccc
Confidence
Q ss_pred --------------c---------------------------------C-----------------CC------------
Q 004347 498 --------------S---------------------------------D-----------------SC------------ 501 (759)
Q Consensus 498 --------------~---------------------------------~-----------------~~------------ 501 (759)
. + .+
T Consensus 991 F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl 1070 (1958)
T KOG0391|consen 991 FQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPL 1070 (1958)
T ss_pred cccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecccccccc
Confidence 0 0 00
Q ss_pred ----------------------------------------------CCCc------------------------------
Q 004347 502 ----------------------------------------------FYPP------------------------------ 505 (759)
Q Consensus 502 ----------------------------------------------~~~~------------------------------ 505 (759)
.+.+
T Consensus 1071 ~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvy 1150 (1958)
T KOG0391|consen 1071 LRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVY 1150 (1958)
T ss_pred ccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCccc
Confidence 0000
Q ss_pred ------------------------------------hHHH----------------------------------------
Q 004347 506 ------------------------------------VEQI---------------------------------------- 509 (759)
Q Consensus 506 ------------------------------------~~~l---------------------------------------- 509 (759)
.+.+
T Consensus 1151 g~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrs 1230 (1958)
T KOG0391|consen 1151 GRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRS 1230 (1958)
T ss_pred chhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHH
Confidence 0000
Q ss_pred -------------------------HhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCC
Q 004347 510 -------------------------VEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSV 564 (759)
Q Consensus 510 -------------------------~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~ 564 (759)
-..|||++.|.-+|..++..|||||||+||+.|+|+|+.+|+.+|+.|+||||++
T Consensus 1231 el~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t 1310 (1958)
T KOG0391|consen 1231 ELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNT 1310 (1958)
T ss_pred HhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCc
Confidence 0126999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCH
Q 004347 565 RLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSV 644 (759)
Q Consensus 565 ~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~Tv 644 (759)
+.++|+.++++||. |..++|||+||+.||.||||++||+|||||++|||.++.||.+|||||||+++|+|||||..+||
T Consensus 1311 ~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1311 SVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTI 1389 (1958)
T ss_pred cHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchH
Confidence 99999999999998 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccc
Q 004347 645 EGRILKRAFSKLKLEHVVIGKGQFHQERTKS 675 (759)
Q Consensus 645 Ee~i~~~~~~K~~l~~~vi~~~~~~~~~~~~ 675 (759)
|+.|+.++..|+.|.+.+|++|.|....+..
T Consensus 1390 EeniLkkanqKr~L~evaiqggdfTt~ff~q 1420 (1958)
T KOG0391|consen 1390 EENILKKANQKRMLDEVAIQGGDFTTAFFKQ 1420 (1958)
T ss_pred HHHHHhhhhHHHHHHHHhhccCCccHHHHhh
Confidence 9999999999999999999999997665443
No 7
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-98 Score=816.98 Aligned_cols=471 Identities=43% Similarity=0.715 Sum_probs=413.1
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCc
Q 004347 185 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSV 264 (759)
Q Consensus 185 ~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~ 264 (759)
..+.+|+|||+-||+||.-+|.++.+||||||||||||+|+|+|+++|.+.|..||+|||||.|++.||.+||.+|||.+
T Consensus 395 ~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl 474 (941)
T KOG0389|consen 395 SSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSL 474 (941)
T ss_pred CCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHHHHhCCce
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHH--HHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCC
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALS--DARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPI 342 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~--~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~ 342 (759)
.+..|+|+..+|..+|...... ..+|+|++|||..+.. +-+.+|++.+|+|+|.||||.+||..|.+++.|..+++
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~--~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~A 552 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKN--KDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINA 552 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhcc--CCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhccccc
Confidence 9999999999999887765432 2489999999998753 33679999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCCCHHHHHhhhhhccCCCCCC-hHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Q 004347 343 GNKLLLTGTPLQNNLAELWSLLHFILPDIFSS-LEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRM 421 (759)
Q Consensus 343 ~~rllLTgTPl~n~~~el~sll~fl~p~~~~~-~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~ 421 (759)
.+||+|||||+|||+.||||||.|++|.+|.+ ..++...|........+.... ......+.+...|+.||+|||.
T Consensus 553 n~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~----~l~qerIsrAK~im~PFILRR~ 628 (941)
T KOG0389|consen 553 NFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENA----LLSQERISRAKTIMKPFILRRL 628 (941)
T ss_pred cceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHH----HHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999975 467777776544333322222 1223478899999999999999
Q ss_pred hhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCC-
Q 004347 422 KSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDS- 500 (759)
Q Consensus 422 k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~- 500 (759)
|++|.+.||||..++.||.|+..|+.+|..++....... ... +......+ .+++|+||+++|||-|+...+.+.
T Consensus 629 K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~--~~~-~~ns~~~~--~~vlmqlRK~AnHPLL~R~~Y~de~ 703 (941)
T KOG0389|consen 629 KSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKL--NEV-SKNSELKS--GNVLMQLRKAANHPLLFRSIYTDEK 703 (941)
T ss_pred HHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhc--ccc-cccccccc--chHHHHHHHHhcChhHHHHhccHHH
Confidence 999999999999999999999999999999987652111 000 11111111 569999999999999986544321
Q ss_pred --------------------------------------------CCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEE
Q 004347 501 --------------------------------------------CFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVF 536 (759)
Q Consensus 501 --------------------------------------------~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIF 536 (759)
..+......+-.|||+..|..+|+++...|+|||||
T Consensus 704 L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiF 783 (941)
T KOG0389|consen 704 LRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIF 783 (941)
T ss_pred HHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEe
Confidence 011122344566899999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcch
Q 004347 537 SQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQM 616 (759)
Q Consensus 537 sq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~ 616 (759)
||||.|+|+|+.+|..+|+.|+|+||+|....|+.+|+.|+. +.+++|||+||+|||.||||++||+||+||.++||..
T Consensus 784 SQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~d 862 (941)
T KOG0389|consen 784 SQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYD 862 (941)
T ss_pred eHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecccccceEEEeecCCCCcc
Confidence 999999999999999999999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred hhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 004347 617 DLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQ 667 (759)
Q Consensus 617 ~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~vi~~~~ 667 (759)
+.||.+||||+||+|||+|||||+++||||.|++.+..|+.|...+.+.+.
T Consensus 863 D~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 863 DKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred cchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 999999999999999999999999999999999999999999999987654
No 8
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=8.9e-98 Score=812.85 Aligned_cols=475 Identities=37% Similarity=0.613 Sum_probs=421.1
Q ss_pred hhcccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC-CCCCCeEEEECCccHHHHHHHHH
Q 004347 180 ELVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEIS 258 (759)
Q Consensus 180 ~~~~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~-~~~~~~LIV~P~sll~~W~~E~~ 258 (759)
.-+|......|.|||++||+||+.+|.++.||||+||||||||+|+|+|++.|... ...+|+|||||.+++.||++||.
T Consensus 196 ~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 196 FKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred ccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 34677777899999999999999999999999999999999999999999999886 56699999999999999999999
Q ss_pred HhCCCceEEEEeCChhH-H------HHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhh
Q 004347 259 RFVPSVSAIIYHGSKKE-R------DEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKC 331 (759)
Q Consensus 259 ~~~p~~~~~~~~g~~~~-r------~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s 331 (759)
+|+|.+++.+|||+... | .......+.+.......|+||||+.++.. ...+..+.|+|+|+||+|+|+|+++
T Consensus 276 ~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-~d~l~~~~W~y~ILDEGH~IrNpns 354 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-GDDLLGILWDYVILDEGHRIRNPNS 354 (923)
T ss_pred HhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-CcccccccccEEEecCcccccCCcc
Confidence 99999999999998762 1 00011112233445678999999998766 3567888999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 004347 332 KLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHA 411 (759)
Q Consensus 332 ~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 411 (759)
+++.+++.+++.+||+|||||+|||+.|||+|++|+.|+.++++..|.+.|..++..+...................|+.
T Consensus 355 ~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~ 434 (923)
T KOG0387|consen 355 KISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRD 434 (923)
T ss_pred HHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887777777777777888899999
Q ss_pred HhhhHHhhhhhhHHhh-hCCCceEEEEEecCCHHHHHHHHHHHHHHH-HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCC
Q 004347 412 ILRPFLLRRMKSDVEQ-MLPRKKEIILYATMTEHQRNFQDHLINKTL-ENHLREKVFSAGRGMKGKLNNLMVQLRKNCNH 489 (759)
Q Consensus 412 il~p~~lRR~k~dv~~-~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 489 (759)
+++||+|||+|+||.. .||.|.+++++|.||+.|+.+|..+++... ..++.+ ....+.-+.-||++|||
T Consensus 435 lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng---------~~~~l~Gi~iLrkICnH 505 (923)
T KOG0387|consen 435 LISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNG---------KRNCLSGIDILRKICNH 505 (923)
T ss_pred HhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcC---------CccceechHHHHhhcCC
Confidence 9999999999999998 899999999999999999999999886542 222211 12233446779999999
Q ss_pred hhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHH-hcCceEEEEeCCCCHHH
Q 004347 490 PDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFN-EKGYEVCRIDGSVRLDE 568 (759)
Q Consensus 490 p~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~-~~g~~~~~l~G~~~~~~ 568 (759)
|.++...-.+....+..+..++.|||+.++..+|..+...|+|||+|+|...|+|+|+.+|. ..||.|+++||.++.+.
T Consensus 506 Pdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~ 585 (923)
T KOG0387|consen 506 PDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAAL 585 (923)
T ss_pred cccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 99998743222222233356889999999999999999999999999999999999999999 68999999999999999
Q ss_pred HHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHH
Q 004347 569 RKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRI 648 (759)
Q Consensus 569 R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i 648 (759)
|+.+|++||+ +..++|||++|++||+|+||++||+||+|||+|||+.+.||..|+|||||+|.|.||||++.|||||+|
T Consensus 586 R~~lVd~Fne-~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEki 664 (923)
T KOG0387|consen 586 RQKLVDRFNE-DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKI 664 (923)
T ss_pred hhHHHHhhcC-CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHH
Confidence 9999999998 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 004347 649 LKRAFSKLKLEHVVIGK 665 (759)
Q Consensus 649 ~~~~~~K~~l~~~vi~~ 665 (759)
|.||..|..|.+.++..
T Consensus 665 Y~rQI~Kq~Ltn~il~~ 681 (923)
T KOG0387|consen 665 YHRQIFKQFLTNRILKN 681 (923)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999975
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.6e-90 Score=778.21 Aligned_cols=493 Identities=35% Similarity=0.597 Sum_probs=430.4
Q ss_pred cccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC-------CCCCeEEEECCccHHHHH
Q 004347 182 VSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-------LHGPYLVIAPLSTLSNWV 254 (759)
Q Consensus 182 ~~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~-------~~~~~LIV~P~sll~~W~ 254 (759)
+|......||.||++||+|+..+..-+.+|||||+||||||+|+|++++.=..+. ..-|.|||||.++..+|.
T Consensus 968 Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~ 1047 (1549)
T KOG0392|consen 968 IPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWK 1047 (1549)
T ss_pred cccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHH
Confidence 3445567899999999999999999999999999999999999999987544332 235899999999999999
Q ss_pred HHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHH
Q 004347 255 NEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLL 334 (759)
Q Consensus 255 ~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~ 334 (759)
.|+.+|+|.++++.|.|+..+|..+|... .+.+|+||||+.+++|. .+|.++.|.|+|+||+|-|||..++++
T Consensus 1048 ~E~~kf~pfL~v~~yvg~p~~r~~lR~q~------~~~~iiVtSYDv~RnD~-d~l~~~~wNYcVLDEGHVikN~ktkl~ 1120 (1549)
T KOG0392|consen 1048 SEVKKFFPFLKVLQYVGPPAERRELRDQY------KNANIIVTSYDVVRNDV-DYLIKIDWNYCVLDEGHVIKNSKTKLT 1120 (1549)
T ss_pred HHHHHhcchhhhhhhcCChHHHHHHHhhc------cccceEEeeHHHHHHHH-HHHHhcccceEEecCcceecchHHHHH
Confidence 99999999999999999999998876543 56799999999999997 889999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 004347 335 KELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILR 414 (759)
Q Consensus 335 ~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~ 414 (759)
++++.+++.||++|||||+|||..|||||++||+|+++|+-.+|++.|..++....+......+.+.+...+..||+.+-
T Consensus 1121 kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVL 1200 (1549)
T KOG0392|consen 1121 KAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVL 1200 (1549)
T ss_pred HHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887666655556667778889999999999
Q ss_pred hHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHH---HHHHHhhhhcCCcchhHHHHHHHHHHHhcCChh
Q 004347 415 PFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLE---NHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPD 491 (759)
Q Consensus 415 p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~ 491 (759)
||++||+|.||..+||||..+..||+|++.|+++|+.+..+... ....+...+.+. .+..++..+..+|+.||||.
T Consensus 1201 PF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt-~~~HvFqaLqYlrKLcnHpa 1279 (1549)
T KOG0392|consen 1201 PFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGT-DKTHVFQALQYLRKLCNHPA 1279 (1549)
T ss_pred HHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCc-chHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999877211 111111111121 26788899999999999999
Q ss_pred hhhhhccCCC--------CCCchHHHHhhccHHHHHHHHHHHHh--------------hCCCcEEEEccchhHHHHHHHH
Q 004347 492 LLESAFSDSC--------FYPPVEQIVEQCGKFRLLDRLLARLF--------------ARNHKVLVFSQWTKILDIMEYY 549 (759)
Q Consensus 492 l~~~~~~~~~--------~~~~~~~l~~~s~K~~~L~~lL~~l~--------------~~~~kvLIFsq~~~~ld~L~~~ 549 (759)
++-....+.. .....-+-+..|+|+.+|.++|..+- ..+||+|||||+..|+|++++-
T Consensus 1280 Lvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekD 1359 (1549)
T KOG0392|consen 1280 LVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKD 1359 (1549)
T ss_pred eeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHH
Confidence 9866422110 01111122678999999999998862 1479999999999999999998
Q ss_pred HHhc---CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhh
Q 004347 550 FNEK---GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHR 626 (759)
Q Consensus 550 L~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~R 626 (759)
|-+. .+.|.|+||++++.+|++++.+||+ ++.+.|+|++|.+||+|+||++|||||+++.+|||+++.|||+||||
T Consensus 1360 L~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHR 1438 (1549)
T KOG0392|consen 1360 LFKKYMPSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHR 1438 (1549)
T ss_pred HhhhhcCceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHh
Confidence 8765 5679999999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccCCHHHHHHhhc
Q 004347 627 IGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQ 691 (759)
Q Consensus 627 iGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~ 691 (759)
|||+|.|.||||||+||+||+|+..|..|...++.||+..+ .++..++-++|+.++.
T Consensus 1439 IGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN--------asl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1439 IGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN--------ASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc--------ccccccCHHHHHHHhc
Confidence 99999999999999999999999999999999999998543 2344678899999998
No 10
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.4e-79 Score=671.06 Aligned_cols=491 Identities=31% Similarity=0.438 Sum_probs=403.3
Q ss_pred hhhhhcccccCCccchhHHHHHHHHHHHh---------hcCCCeEEEcCCCCcHHHHHHHHHHHHHhC--CCCCCeEEEE
Q 004347 177 EQRELVSLLTGGKLKSYQLKGVKWLISLW---------QNGLNGILADQMGLGKTIQTIAFLAHLKGN--GLHGPYLVIA 245 (759)
Q Consensus 177 ~~~~~~~~~~~~~LrpyQ~~gv~~l~~~~---------~~~~~~ILademGlGKTl~ai~li~~l~~~--~~~~~~LIV~ 245 (759)
+.+..++...-..|+|||..||+||+.+. ..|.||||||.||||||+|+|+|++.++.. -...++||||
T Consensus 656 e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~ 735 (1567)
T KOG1015|consen 656 EPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVC 735 (1567)
T ss_pred cchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEc
Confidence 33344555556799999999999999754 368899999999999999999999988753 3346899999
Q ss_pred CCccHHHHHHHHHHhCCCce----EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH--------------H
Q 004347 246 PLSTLSNWVNEISRFVPSVS----AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA--------------R 307 (759)
Q Consensus 246 P~sll~~W~~E~~~~~p~~~----~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~--------------~ 307 (759)
|.+++.||.+||.+|.+++. +-++.-..-.+..-| ..+-..|.....|+|+.|++++... .
T Consensus 736 PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R-~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~ 814 (1567)
T KOG1015|consen 736 PLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEER-SYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFN 814 (1567)
T ss_pred chHHHHHHHHHHHHhcccccccccceeehhhhccChHHH-HHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHH
Confidence 99999999999999998632 222222211111111 1111234456689999999976531 2
Q ss_pred HhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCC
Q 004347 308 KYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGK 387 (759)
Q Consensus 308 ~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~ 387 (759)
..|..-++|+|||||||.|||..+.+++++..+++.+||+|||||+|||+.|+++|++|+.|+++++..+|.+.|..++.
T Consensus 815 k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~ 894 (1567)
T KOG1015|consen 815 KALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQ 894 (1567)
T ss_pred HhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccc
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004347 388 CNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFS 467 (759)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~ 467 (759)
.+........+-..-......|+.+|..|+.|+-...+...||||.+++|++.||+.|..+|..++.... . .+....
T Consensus 895 nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~--~-~G~d~e 971 (1567)
T KOG1015|consen 895 NGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLT--G-VGNDSE 971 (1567)
T ss_pred cCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhcc--c-cCCccc
Confidence 8877776666666566677889999999999999999999999999999999999999999999876211 0 011112
Q ss_pred cCCcchhHHHHHHHHHHHhcCChhhhhhh-----------------cc-CCC----------------------------
Q 004347 468 AGRGMKGKLNNLMVQLRKNCNHPDLLESA-----------------FS-DSC---------------------------- 501 (759)
Q Consensus 468 ~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~-----------------~~-~~~---------------------------- 501 (759)
.+.+....++.-..-|+++++||+.+.-. +. +..
T Consensus 972 g~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Dess 1051 (1567)
T KOG1015|consen 972 GGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESS 1051 (1567)
T ss_pred cccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccc
Confidence 33446677888888999999999875210 00 000
Q ss_pred -------------------------------C--------------------CCc-----------hHHHHhhccHHHHH
Q 004347 502 -------------------------------F--------------------YPP-----------VEQIVEQCGKFRLL 519 (759)
Q Consensus 502 -------------------------------~--------------------~~~-----------~~~l~~~s~K~~~L 519 (759)
. .++ ....+..||||.+|
T Consensus 1052 s~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLL 1131 (1567)
T KOG1015|consen 1052 SGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILL 1131 (1567)
T ss_pred cccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehH
Confidence 0 000 01224568999999
Q ss_pred HHHHHHHhhCCCcEEEEccchhHHHHHHHHHHh----------------------cCceEEEEeCCCCHHHHHHHHHHhh
Q 004347 520 DRLLARLFARNHKVLVFSQWTKILDIMEYYFNE----------------------KGYEVCRIDGSVRLDERKRQIQDFN 577 (759)
Q Consensus 520 ~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~----------------------~g~~~~~l~G~~~~~~R~~~i~~F~ 577 (759)
.+||..+.+-|+|+|||||+...||+|+.+|.. +|..|.+|||+++..+|+.+.++||
T Consensus 1132 leIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FN 1211 (1567)
T KOG1015|consen 1132 LEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFN 1211 (1567)
T ss_pred HHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhc
Confidence 999999999999999999999999999999973 3678999999999999999999999
Q ss_pred cc-CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHH
Q 004347 578 DV-NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKL 656 (759)
Q Consensus 578 ~~-~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~ 656 (759)
++ +-..++|||||+||++||||.+|++|||||..|||..+.|+|-|+||+||+|||+||||++.||+|++||.||..|.
T Consensus 1212 dp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKq 1291 (1567)
T KOG1015|consen 1212 DPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQ 1291 (1567)
T ss_pred CcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHh
Confidence 86 34667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccccc
Q 004347 657 KLEHVVIGKGQFHQE 671 (759)
Q Consensus 657 ~l~~~vi~~~~~~~~ 671 (759)
.+..+|++..++.+.
T Consensus 1292 sls~RVVDeqQv~Rh 1306 (1567)
T KOG1015|consen 1292 SLSFRVVDEQQVERH 1306 (1567)
T ss_pred hhhhhhhhHHHHHHH
Confidence 999999997766544
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=2e-77 Score=673.20 Aligned_cols=469 Identities=32% Similarity=0.495 Sum_probs=389.6
Q ss_pred cCCccchhHHHHHHHHHHHhh------cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCC-----CCeEEEECCccHHHHH
Q 004347 186 TGGKLKSYQLKGVKWLISLWQ------NGLNGILADQMGLGKTIQTIAFLAHLKGNGLH-----GPYLVIAPLSTLSNWV 254 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~------~~~~~ILademGlGKTl~ai~li~~l~~~~~~-----~~~LIV~P~sll~~W~ 254 (759)
....|||||.+|+.||+.... +..|||+||+||+|||+|+|+||..++..++. .+.|||||.+++.||.
T Consensus 235 l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWk 314 (776)
T KOG0390|consen 235 LKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWK 314 (776)
T ss_pred HhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHH
Confidence 345899999999999998653 45678999999999999999999999998887 8899999999999999
Q ss_pred HHHHHhCC--CceEEEEeCChhHHHHHHHhcC-CCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhh
Q 004347 255 NEISRFVP--SVSAIIYHGSKKERDEIRRKHM-PRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKC 331 (759)
Q Consensus 255 ~E~~~~~p--~~~~~~~~g~~~~r~~~~~~~~-~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s 331 (759)
+||.+|.. .+..+.+.|...+.-.-....+ .....-...|.+.||+.+...+ ..+....+++||+||+|++||..+
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~-~~il~~~~glLVcDEGHrlkN~~s 393 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYC-RKILLIRPGLLVCDEGHRLKNSDS 393 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHH-HHHhcCCCCeEEECCCCCccchhh
Confidence 99999976 4677777777665111001110 0011124578999999998876 556667789999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 004347 332 KLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHA 411 (759)
Q Consensus 332 ~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 411 (759)
.++++|..+.+++||+|||||+||++.|+|++|+|++|+++++...|...|..++..............+ ...+.+|..
T Consensus 394 ~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~-~~rl~eL~~ 472 (776)
T KOG0390|consen 394 LTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER-EERLQELRE 472 (776)
T ss_pred HHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998876654433222222222 445899999
Q ss_pred HhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChh
Q 004347 412 ILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPD 491 (759)
Q Consensus 412 il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~ 491 (759)
+...|++||+.+...++||++.+++|+|.+|+.|..+|..++....... ..+..+..+..|+++||||.
T Consensus 473 ~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~-----------~~~~~l~~~~~L~k~cnhP~ 541 (776)
T KOG0390|consen 473 LTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRT-----------LKGYALELITKLKKLCNHPS 541 (776)
T ss_pred HHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhh-----------hhcchhhHHHHHHHHhcCHH
Confidence 9999999999999999999999999999999999999999987642111 12235667889999999999
Q ss_pred hhhhhc-cC--CCCCCchH-----------HHHhhccHHHHHHHHHHHHhhC-CCcEEEEccchhHHHHHHHHHHhcCce
Q 004347 492 LLESAF-SD--SCFYPPVE-----------QIVEQCGKFRLLDRLLARLFAR-NHKVLVFSQWTKILDIMEYYFNEKGYE 556 (759)
Q Consensus 492 l~~~~~-~~--~~~~~~~~-----------~l~~~s~K~~~L~~lL~~l~~~-~~kvLIFsq~~~~ld~L~~~L~~~g~~ 556 (759)
|+.... .. .....+.. .-...|+|+..|..++....+. ..++++-++++.++++++..|..+|+.
T Consensus 542 L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~ 621 (776)
T KOG0390|consen 542 LLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYE 621 (776)
T ss_pred hhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCce
Confidence 985111 00 01111111 1122478999999998655433 346666678889999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 557 VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 557 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
++++||+|+..+|+.+++.||++.+..+|||+|++|||+||||.+|++||+||++|||+.+.|||+|+||.||+|+|+||
T Consensus 622 ~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 622 VLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 004347 637 RLATAQSVEGRILKRAFSKLKLEHVVIGKGQ 667 (759)
Q Consensus 637 rli~~~TvEe~i~~~~~~K~~l~~~vi~~~~ 667 (759)
||++.||+||+||+||..|..|...|++...
T Consensus 702 rLlatGtiEEk~~qrq~~K~~lS~~v~~~~~ 732 (776)
T KOG0390|consen 702 RLLATGTIEEKIYQRQTHKEGLSSMVFDEEE 732 (776)
T ss_pred EeecCCCchHHHHHHHHHhhhhhheEEeccc
Confidence 9999999999999999999999999998644
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-70 Score=568.94 Aligned_cols=487 Identities=31% Similarity=0.501 Sum_probs=384.2
Q ss_pred ccccCCccchhHHHHHHHHHHHhh-cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhC
Q 004347 183 SLLTGGKLKSYQLKGVKWLISLWQ-NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFV 261 (759)
Q Consensus 183 ~~~~~~~LrpyQ~~gv~~l~~~~~-~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 261 (759)
|.-.-..|.|||++|+.|+..... .-.|||||||||.|||+|+|+++..- -...|+|||||+..+.||.+||.+++
T Consensus 178 P~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae---~~ra~tLVvaP~VAlmQW~nEI~~~T 254 (791)
T KOG1002|consen 178 PDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE---VDRAPTLVVAPTVALMQWKNEIERHT 254 (791)
T ss_pred cccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc---cccCCeeEEccHHHHHHHHHHHHHhc
Confidence 444445899999999999998766 45678999999999999999988662 23468999999999999999999997
Q ss_pred C-CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH----------------hhhhcCccEEEEcCcc
Q 004347 262 P-SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK----------------YLRHYNWKYLVVDEGH 324 (759)
Q Consensus 262 p-~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~----------------~l~~~~~~~lIvDEaH 324 (759)
. ..++++|||.+...+.- . ...|++|+|||..+-+.+++ .|..+.|..||+||||
T Consensus 255 ~gslkv~~YhG~~R~~nik--e------l~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH 326 (791)
T KOG1002|consen 255 SGSLKVYIYHGAKRDKNIK--E------LMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAH 326 (791)
T ss_pred cCceEEEEEecccccCCHH--H------hhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhc
Confidence 5 57899999988665431 1 14899999999998766543 3778899999999999
Q ss_pred cccChhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhc-------cc-----CCCCchh
Q 004347 325 RLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFD-------LS-----GKCNSEV 392 (759)
Q Consensus 325 ~ikn~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~-------~~-----~~~~~~~ 392 (759)
.||+..|...+++..+.+.+||+|||||+||...|||||+.||+-..|..+ |...+. +. ..+....
T Consensus 327 ~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyy--fc~~cdc~~~~~~ftdr~~c~~c~h~~ 404 (791)
T KOG1002|consen 327 NIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYY--FCTKCDCASLDWKFTDRMHCDHCSHNI 404 (791)
T ss_pred ccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhh--hhhhccccccceeecccccCCcccchh
Confidence 999999999999999999999999999999999999999999988766422 111110 00 0000000
Q ss_pred hHHH--------------HHHHHHHHHHHHHHHHhhhHHhhhhhhHHhh--hCCCceEEEEEecCCHHHHHHHHHHHHHH
Q 004347 393 MKEE--------------LEEKRRGQMVAKLHAILRPFLLRRMKSDVEQ--MLPRKKEIILYATMTEHQRNFQDHLINKT 456 (759)
Q Consensus 393 ~~~~--------------~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~--~LP~k~e~~v~~~ls~~q~~~y~~l~~~~ 456 (759)
.... ....-+.......|.++..+|+||++-.-.. .|||+...+-.-.++..+..+|+.++...
T Consensus 405 m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dS 484 (791)
T KOG1002|consen 405 MQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDS 484 (791)
T ss_pred hhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhh
Confidence 0000 0001122445578889999999999865333 38999888888889999999999998765
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc----cCC---------CCCC-------------------
Q 004347 457 LENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF----SDS---------CFYP------------------- 504 (759)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~----~~~---------~~~~------------------- 504 (759)
...+..--..+.--.....++.++.++|++..||+|+...- .+. |..+
T Consensus 485 krkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~ 564 (791)
T KOG1002|consen 485 KRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIK 564 (791)
T ss_pred HHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHH
Confidence 54442211112222345678889999999999999974311 000 0000
Q ss_pred ----------------------------chH------------------HHHhhccHHHHHHHHHHHHhhCC--CcEEEE
Q 004347 505 ----------------------------PVE------------------QIVEQCGKFRLLDRLLARLFARN--HKVLVF 536 (759)
Q Consensus 505 ----------------------------~~~------------------~l~~~s~K~~~L~~lL~~l~~~~--~kvLIF 536 (759)
..+ .-+..|.|+++|.+-|..+.+++ -|.|||
T Consensus 565 eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVF 644 (791)
T KOG1002|consen 565 EYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVF 644 (791)
T ss_pred HHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhH
Confidence 000 11345679999999888887655 488999
Q ss_pred ccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcch
Q 004347 537 SQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQM 616 (759)
Q Consensus 537 sq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~ 616 (759)
|||+.|+|+|+..|...|+.++.+.|+|++..|...|+.|.+ +.+|+|||+|.+|||..+||+.|++|.++||+|||++
T Consensus 645 SQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaV 723 (791)
T KOG1002|consen 645 SQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAV 723 (791)
T ss_pred HHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEeeechhceeEeecccccHHH
Confidence 999999999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred hhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccCCHHHHHHhhc
Q 004347 617 DLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQ 691 (759)
Q Consensus 617 ~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~ 691 (759)
..||++|+|||||.+||.|.||+.++|||++|++.|..|..+++..||..+ .....++.+|+.-|+.
T Consensus 724 e~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde--------~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 724 EWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDE--------EAISKLTEEDMQFLFN 790 (791)
T ss_pred HhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcH--------HHHHhcCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999998643 1123677777776653
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.1e-68 Score=574.27 Aligned_cols=478 Identities=28% Similarity=0.463 Sum_probs=389.1
Q ss_pred ccccCCccchhHHHHHHHHHHHhh-cCCCeEEEcCCCCcHHHHHHHHHHHHHh-------CC-CCCCeEEEECCccHHHH
Q 004347 183 SLLTGGKLKSYQLKGVKWLISLWQ-NGLNGILADQMGLGKTIQTIAFLAHLKG-------NG-LHGPYLVIAPLSTLSNW 253 (759)
Q Consensus 183 ~~~~~~~LrpyQ~~gv~~l~~~~~-~~~~~ILademGlGKTl~ai~li~~l~~-------~~-~~~~~LIV~P~sll~~W 253 (759)
|......|.|||..|+.||+.... .+.||||||+||+|||+++|++|.+-.. .+ ...++|||||.+++.||
T Consensus 319 P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW 398 (901)
T KOG4439|consen 319 PDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQW 398 (901)
T ss_pred CCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHH
Confidence 455567899999999999987543 4678999999999999999999876542 11 12369999999999999
Q ss_pred HHHHHHhCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHH----HH-----HHhhhhcCccEEEEcC
Q 004347 254 VNEISRFVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALS----DA-----RKYLRHYNWKYLVVDE 322 (759)
Q Consensus 254 ~~E~~~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~----~~-----~~~l~~~~~~~lIvDE 322 (759)
..|+.+... .+.|++|||+.. |+. ......+|+||||||..+.+ .. ...|..+.|.+||+||
T Consensus 399 ~~Ev~~rl~~n~LsV~~~HG~n~-r~i------~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDE 471 (901)
T KOG4439|consen 399 EAEVARRLEQNALSVYLYHGPNK-REI------SAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDE 471 (901)
T ss_pred HHHHHHHHhhcceEEEEecCCcc-ccC------CHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhh
Confidence 999988764 478999999985 211 11122589999999998876 11 1347788999999999
Q ss_pred cccccChhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHH
Q 004347 323 GHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRR 402 (759)
Q Consensus 323 aH~ikn~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~ 402 (759)
||.|||++++.+.++..+++..||+|||||+||++-++|+|+.||+-..|+++..|..+......
T Consensus 472 AH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~--------------- 536 (901)
T KOG4439|consen 472 AHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSK--------------- 536 (901)
T ss_pred hhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccc---------------
Confidence 99999999999999999999999999999999999999999999999999999998888764432
Q ss_pred HHHHHHHHHHhhhHHhhhhhhHHhh-----hCCCceEEEEEecCCHHHHHHHHHHHHHHH---HHHHHHhh---------
Q 004347 403 GQMVAKLHAILRPFLLRRMKSDVEQ-----MLPRKKEIILYATMTEHQRNFQDHLINKTL---ENHLREKV--------- 465 (759)
Q Consensus 403 ~~~~~~L~~il~p~~lRR~k~dv~~-----~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~---~~~~~~~~--------- 465 (759)
..-.+|.-+.++.||||+|..... .||.+...++.+.|+..+...|+-+..... ..++....
T Consensus 537 -~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~ 615 (901)
T KOG4439|consen 537 -GGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQ 615 (901)
T ss_pred -cchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcc
Confidence 223456667899999999998765 799999999999999999999987754322 22221110
Q ss_pred ------------------------hhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCC-------------------
Q 004347 466 ------------------------FSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCF------------------- 502 (759)
Q Consensus 466 ------------------------~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~------------------- 502 (759)
.+........++.++++||++|+||.+...+.+...+
T Consensus 616 s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~ 695 (901)
T KOG4439|consen 616 SRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLA 695 (901)
T ss_pred ccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHH
Confidence 0011122345688899999999999777554321100
Q ss_pred --------------------CCc--hHHHHhhccHHHHHHHHHHHH-hhCCCcEEEEccchhHHHHHHHHHHhcCceEEE
Q 004347 503 --------------------YPP--VEQIVEQCGKFRLLDRLLARL-FARNHKVLVFSQWTKILDIMEYYFNEKGYEVCR 559 (759)
Q Consensus 503 --------------------~~~--~~~l~~~s~K~~~L~~lL~~l-~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~ 559 (759)
..+ ..+....|.|+..+..++..+ .....|++|.|||+.+++++...+...|+.|..
T Consensus 696 el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~s 775 (901)
T KOG4439|consen 696 ELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTS 775 (901)
T ss_pred hhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeee
Confidence 000 111233577999999988877 567899999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEe
Q 004347 560 IDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLA 639 (759)
Q Consensus 560 l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli 639 (759)
++|.....+|+.+++.||..+++.+|+|+|..|||.||||++|+|+|++|..|||+-..||.+|++|+||+|+|+||||+
T Consensus 776 i~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~ 855 (901)
T KOG4439|consen 776 ITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLM 855 (901)
T ss_pred ecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEE
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccCCHHHHHHhh
Q 004347 640 TAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALL 690 (759)
Q Consensus 640 ~~~TvEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll 690 (759)
++||||++|...|..|..++..|+.+.. .. .+..++-.+|.-||
T Consensus 856 ~~gTvEqrV~~LQdkKldlA~~VL~G~~-----tr--~~~kLT~adlk~LF 899 (901)
T KOG4439|consen 856 CKGTVEQRVKSLQDKKLDLAKGVLTGSA-----TR--KMNKLTLADLKKLF 899 (901)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccCcc-----cc--ccccccHHHHHHHh
Confidence 9999999999999999999999997432 11 12367778887765
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-66 Score=633.60 Aligned_cols=493 Identities=40% Similarity=0.643 Sum_probs=414.8
Q ss_pred cccCCccchhHHHHHHHHH-HHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC--CCCeEEEECCccHHHHHHHHHHh
Q 004347 184 LLTGGKLKSYQLKGVKWLI-SLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL--HGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~-~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~--~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
....+.|+|||.+|++|+. .++..+.+|||||+||+|||+|+|+++.++..... .+|+|||||.+++.||.+|+.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 4455789999999999999 89999999999999999999999999998666444 57999999999999999999999
Q ss_pred CCCce-EEEEeCChhH----HHHHHHhcCCCCCCCCCCEEEecHHHHHH---HHHHhhhhcCccEEEEcCcccccChhhH
Q 004347 261 VPSVS-AIIYHGSKKE----RDEIRRKHMPRAIGPKFPIVVTSYEVALS---DARKYLRHYNWKYLVVDEGHRLKNPKCK 332 (759)
Q Consensus 261 ~p~~~-~~~~~g~~~~----r~~~~~~~~~~~~~~~~~vvIttye~l~~---~~~~~l~~~~~~~lIvDEaH~ikn~~s~ 332 (759)
.|... +..++|.... +..+........ ...+++++|||+.+.. + ...+....|+++|+||||++||..+.
T Consensus 413 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~v~itty~~l~~~~~~-~~~l~~~~~~~~v~DEa~~ikn~~s~ 490 (866)
T COG0553 413 APDLRLVLVYHGEKSELDKKREALRDLLKLHL-VIIFDVVITTYELLRRFLVD-HGGLKKIEWDRVVLDEAHRIKNDQSS 490 (866)
T ss_pred CccccceeeeeCCcccccHHHHHHHHHhhhcc-cceeeEEechHHHHHHhhhh-HHHHhhceeeeeehhhHHHHhhhhhH
Confidence 99999 9999998863 333332211000 1238999999999998 6 47899999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhh-hccCCCCC-ChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHH
Q 004347 333 LLKELKYIPIGNKLLLTGTPLQNNLAELWSLLH-FILPDIFS-SLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLH 410 (759)
Q Consensus 333 ~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~-fl~p~~~~-~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 410 (759)
.++++..+++.++++|||||++|++.|||++++ |++|.+++ +...|..||..+......... .......+..|+
T Consensus 491 ~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~l~ 566 (866)
T COG0553 491 EGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP----LEARELGIELLR 566 (866)
T ss_pred HHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc----hhhHHHHHHHHH
Confidence 999999999999999999999999999999999 99999999 568999999877554433211 111224455599
Q ss_pred HHhhhHHhhhhhhH--HhhhCCCceEEEEEecCCHHHHHHHHHHHH---HHHHHHHHHhhhhcC--Cc--chhHHHHHHH
Q 004347 411 AILRPFLLRRMKSD--VEQMLPRKKEIILYATMTEHQRNFQDHLIN---KTLENHLREKVFSAG--RG--MKGKLNNLMV 481 (759)
Q Consensus 411 ~il~p~~lRR~k~d--v~~~LP~k~e~~v~~~ls~~q~~~y~~l~~---~~~~~~~~~~~~~~~--~~--~~~~l~~~l~ 481 (759)
.+++||++||++.+ +...||++.+.+++|.+++.|..+|..... ............... .. ....+.+.++
T Consensus 567 ~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 646 (866)
T COG0553 567 KLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLT 646 (866)
T ss_pred HHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH
Confidence 99999999999999 888999999999999999999999999988 333322211110000 00 2567889999
Q ss_pred HHHHhcCChhhhhhh-ccCC-----------CCCCchHHHHhhc-cHHHHHHHHH-HHHhhCCC--cEEEEccchhHHHH
Q 004347 482 QLRKNCNHPDLLESA-FSDS-----------CFYPPVEQIVEQC-GKFRLLDRLL-ARLFARNH--KVLVFSQWTKILDI 545 (759)
Q Consensus 482 ~Lrk~~~hp~l~~~~-~~~~-----------~~~~~~~~l~~~s-~K~~~L~~lL-~~l~~~~~--kvLIFsq~~~~ld~ 545 (759)
.+|++|+||.++... .... ........++..| +|+..+.+++ ..+...|+ |+|||+||+.++++
T Consensus 647 ~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~i 726 (866)
T COG0553 647 RLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDL 726 (866)
T ss_pred HHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHH
Confidence 999999999998775 2111 1222334567788 9999999999 89999999 99999999999999
Q ss_pred HHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhh
Q 004347 546 MEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCH 625 (759)
Q Consensus 546 L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~ 625 (759)
|+.+|...++.+++++|+++...|+.++++|+++ ...+||++|++|||.||||+.|++||+||++|||+.+.||++|+|
T Consensus 727 l~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~ 805 (866)
T COG0553 727 LEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAH 805 (866)
T ss_pred HHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHH
Confidence 9999999999999999999999999999999984 678899999999999999999999999999999999999999999
Q ss_pred hcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcC-CccccccccccccccCCHHHHHHhhc
Q 004347 626 RIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGK-GQFHQERTKSNCIDALEEEDLLALLQ 691 (759)
Q Consensus 626 RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~vi~~-~~~~~~~~~~~~~~~~~~~el~~ll~ 691 (759)
|+||+++|.||++++.||+|++|+.++..|..+...+++. +. .....++.+++..++.
T Consensus 806 RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~--------~~~~~~~~~~~~~l~~ 864 (866)
T COG0553 806 RIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGE--------KELSKLSIEDLLDLFS 864 (866)
T ss_pred HhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcc--------cchhhccHHHHHHHhc
Confidence 9999999999999999999999999999999999999985 21 1122556677766654
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=5.7e-66 Score=555.93 Aligned_cols=488 Identities=30% Similarity=0.445 Sum_probs=398.4
Q ss_pred CCccchhHHHHHHHHHHHh---------hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLW---------QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEI 257 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~---------~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~ 257 (759)
...++|||+-||+||+... ..|.||||||.||||||+|+|+|+.-+.++...+.+|+|+|-.++.||..||
T Consensus 252 a~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEf 331 (1387)
T KOG1016|consen 252 AHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEF 331 (1387)
T ss_pred HhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHh
Confidence 3579999999999998632 3588999999999999999999999999988899999999999999999999
Q ss_pred HHhCCC-----------ceEEEEeCCh---hHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH-----------------
Q 004347 258 SRFVPS-----------VSAIIYHGSK---KERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA----------------- 306 (759)
Q Consensus 258 ~~~~p~-----------~~~~~~~g~~---~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~----------------- 306 (759)
..|.|. +.+.+..... ..|..+.. .|.....|+++.|++++--.
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~-----~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~ 406 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIE-----QWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRI 406 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHH-----HHhccCCEEEehHHHHHHHHHhcccccCCcccccccc
Confidence 999985 2334433221 22322222 23356678999998864322
Q ss_pred --------------------HHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhh
Q 004347 307 --------------------RKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHF 366 (759)
Q Consensus 307 --------------------~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~f 366 (759)
...|-.-+.|+|||||+|||||....++.+|+.+++++||.|||-|+|||+-|+|+|++|
T Consensus 407 ~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDF 486 (1387)
T KOG1016|consen 407 SSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDF 486 (1387)
T ss_pred CCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhhee
Confidence 122445578999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHH
Q 004347 367 ILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQR 446 (759)
Q Consensus 367 l~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~ 446 (759)
++|+++++..+|.+.|..++..+....+...+.+.-......||.+|..|+.||+...+...||.+.|+++.+.+|..|+
T Consensus 487 VRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR 566 (1387)
T KOG1016|consen 487 VRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQR 566 (1387)
T ss_pred ccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHH
Confidence 99999999999999999999888877777666666667778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCC--------------------------
Q 004347 447 NFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDS-------------------------- 500 (759)
Q Consensus 447 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~-------------------------- 500 (759)
.+|+.+......+.... ....-..+..+.-+.+++|||+.++..+...
T Consensus 567 ~LY~~Fm~d~~r~~~~~------~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~ 640 (1387)
T KOG1016|consen 567 QLYRNFMLDAKREIAAN------NDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFN 640 (1387)
T ss_pred HHHHHHHHHHHHhhccc------cccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCC
Confidence 99999875544433111 1111123344556778999998875432100
Q ss_pred ---------------------------CCCC----------------------chHHHHhhccHHHHHHHHHHHHhhCCC
Q 004347 501 ---------------------------CFYP----------------------PVEQIVEQCGKFRLLDRLLARLFARNH 531 (759)
Q Consensus 501 ---------------------------~~~~----------------------~~~~l~~~s~K~~~L~~lL~~l~~~~~ 531 (759)
..++ ..+.+++.++|+..+.+++..-..-|.
T Consensus 641 ~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~ 720 (1387)
T KOG1016|consen 641 SIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGE 720 (1387)
T ss_pred CCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCc
Confidence 0000 001223445677777777776667789
Q ss_pred cEEEEccchhHHHHHHHHHHhc------------------CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccc
Q 004347 532 KVLVFSQWTKILDIMEYYFNEK------------------GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAG 593 (759)
Q Consensus 532 kvLIFsq~~~~ld~L~~~L~~~------------------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ag 593 (759)
|+|||||....+|.|+..|..+ +..|.+++|.++..+|.++|++||+..+-...||+||++|
T Consensus 721 kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag 800 (1387)
T KOG1016|consen 721 KILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAG 800 (1387)
T ss_pred eEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccc
Confidence 9999999999999999999864 3358999999999999999999998433334899999999
Q ss_pred cCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccc
Q 004347 594 GLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERT 673 (759)
Q Consensus 594 g~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~vi~~~~~~~~~~ 673 (759)
..||||..|+.+|+||..|||..+.||++|++|+||+|+++|||||+.+|+|.+||.|+..|..+..+|++.-+.
T Consensus 801 ~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np----- 875 (1387)
T KOG1016|consen 801 SLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANP----- 875 (1387)
T ss_pred cccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred cccccccCCHHHHHHhhcchh
Q 004347 674 KSNCIDALEEEDLLALLQDEE 694 (759)
Q Consensus 674 ~~~~~~~~~~~el~~ll~~~~ 694 (759)
...++..|+..|+...+
T Consensus 876 ----~an~s~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 876 ----DANISQKELENLLMYDE 892 (1387)
T ss_pred ----cccccHHHHHHHhhhhh
Confidence 22577888988888765
No 16
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1e-58 Score=545.10 Aligned_cols=438 Identities=21% Similarity=0.256 Sum_probs=328.1
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceE
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSA 266 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~ 266 (759)
...|.|||+..+.+++. ....+.|||||||||||++|++++..+...|..+|+|||||.+++.||..|+.+++ +...
T Consensus 150 ~~~l~pHQl~~~~~vl~--~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~ 226 (956)
T PRK04914 150 RASLIPHQLYIAHEVGR--RHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRF-NLRF 226 (956)
T ss_pred CCCCCHHHHHHHHHHhh--ccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHh-CCCe
Confidence 34699999999988765 34677899999999999999999999999988899999999999999999998776 3455
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH--HHhhhhcCccEEEEcCcccccC---hhhHHHHHHhcC-
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA--RKYLRHYNWKYLVVDEGHRLKN---PKCKLLKELKYI- 340 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~--~~~l~~~~~~~lIvDEaH~ikn---~~s~~~~~l~~l- 340 (759)
.++.+....... . ........++++|+||+.+.++. ...+....|++|||||||++++ ..+..++.+..+
T Consensus 227 ~i~~~~~~~~~~--~--~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 227 SLFDEERYAEAQ--H--DADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred EEEcCcchhhhc--c--cccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 566554322110 0 00112235789999999998642 2446677999999999999995 345667777777
Q ss_pred -CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhccc------------CCCCchhhHHHHHHHH------
Q 004347 341 -PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLS------------GKCNSEVMKEELEEKR------ 401 (759)
Q Consensus 341 -~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~------------~~~~~~~~~~~~~~~~------ 401 (759)
+++++++|||||++|+..++|++|+||+|+.|+++..|....... ................
T Consensus 303 ~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 303 EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIE 382 (956)
T ss_pred hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchh
Confidence 577999999999999999999999999999999999997654321 1110000001110000
Q ss_pred ----------------HHHHHHHHHH--HhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 004347 402 ----------------RGQMVAKLHA--ILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLRE 463 (759)
Q Consensus 402 ----------------~~~~~~~L~~--il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~ 463 (759)
....+..|.. -...+|+|+++.++. .+|.+....+.+++++.-...+.. ...
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~----~~~----- 452 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKV----SLE----- 452 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHH----hHH-----
Confidence 0111111111 023567899999986 589888888888886542222211 000
Q ss_pred hhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHH
Q 004347 464 KVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKIL 543 (759)
Q Consensus 464 ~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~l 543 (759)
..++. +.+|..+...+.. ........+|+..|.++|... .+.|+||||++..++
T Consensus 453 -----------------~~~~~-~l~pe~~~~~~~~------~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~ 506 (956)
T PRK04914 453 -----------------ARARD-MLYPEQIYQEFED------NATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATA 506 (956)
T ss_pred -----------------HHHHh-hcCHHHHHHHHhh------hhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHH
Confidence 01111 2233222111100 011123457999999999875 488999999999999
Q ss_pred HHHHHHH-HhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhh
Q 004347 544 DIMEYYF-NEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMD 622 (759)
Q Consensus 544 d~L~~~L-~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~g 622 (759)
+.|...| ...|++++.+||+++..+|.++++.|++++++++| ||||++||+|+|++.|++||+||+||||..|+||+|
T Consensus 507 ~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIG 585 (956)
T PRK04914 507 LQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIG 585 (956)
T ss_pred HHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccccEEEEecCCCCHHHHHHHhc
Confidence 9999999 46699999999999999999999999985445555 788999999999999999999999999999999999
Q ss_pred hhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCCcc
Q 004347 623 RCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQF 668 (759)
Q Consensus 623 R~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~vi~~~~~ 668 (759)
|+||+||+++|.||.+++.+|++++|++....|..++..+++.+..
T Consensus 586 R~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~ 631 (956)
T PRK04914 586 RLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRA 631 (956)
T ss_pred ccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHH
Confidence 9999999999999999999999999999999999999988887543
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-58 Score=480.04 Aligned_cols=425 Identities=27% Similarity=0.408 Sum_probs=333.3
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceE-
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSA- 266 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~- 266 (759)
..|.|||++||.|.+ .+|+++|||||||||||+|||+++.+++.. +|.|||||.++...|.+++.+|+|....
T Consensus 197 s~LlPFQreGv~faL---~RgGR~llADeMGLGKTiQAlaIA~yyraE---wplliVcPAsvrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 197 SRLLPFQREGVIFAL---ERGGRILLADEMGLGKTIQALAIARYYRAE---WPLLIVCPASVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred HhhCchhhhhHHHHH---hcCCeEEEecccccchHHHHHHHHHHHhhc---CcEEEEecHHHhHHHHHHHHHhcccccce
Confidence 468999999999999 458889999999999999999999988775 6999999999999999999999998654
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC--CCCc
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI--PIGN 344 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l--~~~~ 344 (759)
.+..++.+. .........|.|+||+++... ...|..-.|.+||+||+|++|+..++..+++..+ ...|
T Consensus 271 ~vv~~~~D~---------~~~~~t~~~v~ivSye~ls~l-~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 271 FVVDKSSDP---------LPDVCTSNTVAIVSYEQLSLL-HDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKH 340 (689)
T ss_pred EEEecccCC---------ccccccCCeEEEEEHHHHHHH-HHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhh
Confidence 233332211 111223456999999998776 4778777899999999999999999998888776 5788
Q ss_pred EEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhh-HHhhhhhh
Q 004347 345 KLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRP-FLLRRMKS 423 (759)
Q Consensus 345 rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p-~~lRR~k~ 423 (759)
.|||||||--.++.|||..+..+++.+|.+..+|...|+.......... ..+..+..+|+.+|.. .|+||+|.
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D------ykg~tnl~EL~~lL~k~lMIRRlK~ 414 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD------YKGCTNLEELAALLFKRLMIRRLKA 414 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875543221111 1223556778887754 68999999
Q ss_pred HHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCC
Q 004347 424 DVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFY 503 (759)
Q Consensus 424 dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 503 (759)
+|..+||+|+..++++ .+..+-...+.++....... +. ......-..+++..++
T Consensus 415 dvL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~t---~~----~~~e~~~~~l~l~y~~------------------ 468 (689)
T KOG1000|consen 415 DVLKQLPPKRREVVYV-SGGRIDARMDDLVKAAADYT---KV----NSMERKHESLLLFYSL------------------ 468 (689)
T ss_pred HHHhhCCccceEEEEE-cCCccchHHHHHHHHhhhcc---hh----hhhhhhhHHHHHHHHH------------------
Confidence 9999999997666654 33333333333332221100 00 0000000001111000
Q ss_pred CchHHHHhhccHHHHHHHHHHH----HhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhcc
Q 004347 504 PPVEQIVEQCGKFRLLDRLLAR----LFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV 579 (759)
Q Consensus 504 ~~~~~l~~~s~K~~~L~~lL~~----l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 579 (759)
..-.|+....+.|.. .-+.+.|++||+++..++|-|+..+..+++..+||||+++...|+.+++.|+.
T Consensus 469 -------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~- 540 (689)
T KOG1000|consen 469 -------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQT- 540 (689)
T ss_pred -------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhcc-
Confidence 112355555555544 34568999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHH
Q 004347 580 NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLE 659 (759)
Q Consensus 580 ~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~ 659 (759)
+..+.|-++|..|+|.||+|++|+.|+|.+.+|||...+||.+|+||+||+..|.||+|+++||+|+.++..+..|+...
T Consensus 541 seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl 620 (689)
T KOG1000|consen 541 SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVL 620 (689)
T ss_pred ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred HHH-hcCCcc
Q 004347 660 HVV-IGKGQF 668 (759)
Q Consensus 660 ~~v-i~~~~~ 668 (759)
..+ +++.+|
T Consensus 621 ~s~gl~s~~~ 630 (689)
T KOG1000|consen 621 GSVGLSSDTF 630 (689)
T ss_pred hhcccCcccc
Confidence 544 444555
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=2.1e-54 Score=483.35 Aligned_cols=386 Identities=41% Similarity=0.635 Sum_probs=345.4
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC-CCCCeEEEECCccHHHHHHHHHHhCCCce
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-LHGPYLVIAPLSTLSNWVNEISRFVPSVS 265 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~-~~~~~LIV~P~sll~~W~~E~~~~~p~~~ 265 (759)
++.|.|||.+|++|+...|..+..+|||||||+|||++++.++..+...+ ..+|+||++|.+++.||.+++..|.|...
T Consensus 293 ~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e~~~wap~~~ 372 (696)
T KOG0383|consen 293 GGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWEREFELWAPSFY 372 (696)
T ss_pred CccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCchhccCCCcc
Confidence 48999999999999999999999999999999999999999999888744 45899999999999999999999999999
Q ss_pred EEEEeCChhHHHHHHHhcCCCCC----------------CCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccCh
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAI----------------GPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNP 329 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~----------------~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~ 329 (759)
+..|+|+...|..++...+.... ...+++.+++|++...+. ..+..+.|.++|+||+|+++|.
T Consensus 373 vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~-~il~~v~w~~livde~~rlkn~ 451 (696)
T KOG0383|consen 373 VVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQ-SILFSVQWGLLIVDEAHRLKNK 451 (696)
T ss_pred cccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCH-HHHhhhhcceeEeechhhcccc
Confidence 99999999999887766543221 226789999999998884 7889999999999999999999
Q ss_pred hhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 004347 330 KCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKL 409 (759)
Q Consensus 330 ~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L 409 (759)
.+.+++.+......++++|||||+|||+.+|+++|+|+.|..|.+...|.+.|... .....+.+|
T Consensus 452 ~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~---------------~~~~~~~~l 516 (696)
T KOG0383|consen 452 QSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI---------------SCEEQIKKL 516 (696)
T ss_pred hhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---------------hHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998877422 234678899
Q ss_pred HHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCC
Q 004347 410 HAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNH 489 (759)
Q Consensus 410 ~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 489 (759)
|.++.|+++||.+.|+.+.+|.|.+.++.+.+++.|+.+|+.++......... .+....+.|++|+|||+|+|
T Consensus 517 ~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-------~~~~~s~~n~~mel~K~~~h 589 (696)
T KOG0383|consen 517 HLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-------GVHQYSLLNIVMELRKQCNH 589 (696)
T ss_pred ccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-------cchhHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999998877655533 34466788999999999999
Q ss_pred hhhhhhhccCCCC-CCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHH
Q 004347 490 PDLLESAFSDSCF-YPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDE 568 (759)
Q Consensus 490 p~l~~~~~~~~~~-~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~ 568 (759)
||++.....-... ......+++.|+|+..|..+++++...||||+||+|++.++|+|+++|...| .|.|+||..+...
T Consensus 590 py~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~ 668 (696)
T KOG0383|consen 590 PYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPE 668 (696)
T ss_pred cccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchh
Confidence 9998772111110 1123467889999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhccCCCceEEEEecccccCC
Q 004347 569 RKRQIQDFNDVNSSYRIFLLSTRAGGLG 596 (759)
Q Consensus 569 R~~~i~~F~~~~~~~~v~LlsT~agg~G 596 (759)
|+..|++||.+++.-++||+||+|||+|
T Consensus 669 rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 669 RQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hhhhccccCCCCccceEEEeecccccCC
Confidence 9999999999899999999999999998
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.8e-51 Score=465.86 Aligned_cols=449 Identities=29% Similarity=0.421 Sum_probs=360.0
Q ss_pred hhHHHHHHHHHHH-hhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC-------CCCCeEEEECCccHHHHHHHHHHhCC-
Q 004347 192 SYQLKGVKWLISL-WQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-------LHGPYLVIAPLSTLSNWVNEISRFVP- 262 (759)
Q Consensus 192 pyQ~~gv~~l~~~-~~~~~~~ILademGlGKTl~ai~li~~l~~~~-------~~~~~LIV~P~sll~~W~~E~~~~~p- 262 (759)
.+|..+..|+... ...-.|||+||+||+|||+++|+++....... ..+..|||||.+++.+|..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 5555444444332 23456899999999999999999887655432 35678999999999999999955543
Q ss_pred -CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCC
Q 004347 263 -SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIP 341 (759)
Q Consensus 263 -~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~ 341 (759)
.+.+.+||| |... .....+++||+|||.++.. ..+..+.|-.+|+||||.++|.+++.++++..+.
T Consensus 215 ~~l~v~v~~g----r~kd------~~el~~~dVVltTy~il~~---~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~ 281 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTKD------KSELNSYDVVLTTYDILKN---SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLD 281 (674)
T ss_pred cceEEEEecc----cccc------cchhcCCceEEeeHHHhhc---ccccceeEEEEEeccccccCCcchHhhhhheeec
Confidence 467888998 1110 1112578899999999864 3456689999999999999999999999999999
Q ss_pred CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Q 004347 342 IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRM 421 (759)
Q Consensus 342 ~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~ 421 (759)
+.+||+|||||+||++.+||+++.|+.-..+.....|...+..+...... ...+..++.++.++++||+
T Consensus 282 a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~-----------~~~~k~l~~~L~~v~lrrt 350 (674)
T KOG1001|consen 282 AKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY-----------KEGVKTLQGILKKVMLRRT 350 (674)
T ss_pred cceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH-----------HHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999888888777655432221 3567889999999999999
Q ss_pred hhHH-----hhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhh
Q 004347 422 KSDV-----EQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESA 496 (759)
Q Consensus 422 k~dv-----~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 496 (759)
|... ...||++...++++.++..++.+|..+.......+-.....+........+...+.+||++|+||.++...
T Consensus 351 K~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~ 430 (674)
T KOG1001|consen 351 KEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYE 430 (674)
T ss_pred ccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhh
Confidence 8632 23699999999999999999999999987655444322222233334566777788999999999887432
Q ss_pred ccCCC----------------------CC---------------------------------Cch------HHHHh----
Q 004347 497 FSDSC----------------------FY---------------------------------PPV------EQIVE---- 511 (759)
Q Consensus 497 ~~~~~----------------------~~---------------------------------~~~------~~l~~---- 511 (759)
..... .. +.. ..+..
T Consensus 431 ~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~ 510 (674)
T KOG1001|consen 431 MDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPL 510 (674)
T ss_pred hhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccc
Confidence 11100 00 000 00111
Q ss_pred ---------hccHHHHHHHHHHHHhhCCC-cEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCC
Q 004347 512 ---------QCGKFRLLDRLLARLFARNH-KVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNS 581 (759)
Q Consensus 512 ---------~s~K~~~L~~lL~~l~~~~~-kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 581 (759)
.+.|+..+..+|........ +++||||++.++++++..|...|+.+.+++|.++...|.+.+..|+. ++
T Consensus 511 ~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~-~~ 589 (674)
T KOG1001|consen 511 PSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPC-DP 589 (674)
T ss_pred cchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhccccc-Cc
Confidence 25577777777775444444 99999999999999999999999999999999999999999999995 78
Q ss_pred CceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Q 004347 582 SYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHV 661 (759)
Q Consensus 582 ~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~ 661 (759)
.+.|+++|.+|||.|+||+.|++|++.|++|||....||++|+||+||+++|.|+||+..+|+|++|+..+.+|+.+...
T Consensus 590 ~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~ 669 (674)
T KOG1001|consen 590 LVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNAS 669 (674)
T ss_pred cHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HhcC
Q 004347 662 VIGK 665 (759)
Q Consensus 662 vi~~ 665 (759)
..+.
T Consensus 670 a~~~ 673 (674)
T KOG1001|consen 670 AFGE 673 (674)
T ss_pred hccC
Confidence 7653
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2.4e-42 Score=369.09 Aligned_cols=280 Identities=36% Similarity=0.639 Sum_probs=225.0
Q ss_pred hHHHHHHHHHHHh---------hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCC---CeEEEECCccHHHHHHHHHHh
Q 004347 193 YQLKGVKWLISLW---------QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHG---PYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 193 yQ~~gv~~l~~~~---------~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~---~~LIV~P~sll~~W~~E~~~~ 260 (759)
||+.||.||+..+ ....||||||+||+|||+++++++.++...+... ++|||||.+++.+|..|+.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7788999999999999999999999888755443 699999999999999999999
Q ss_pred C-C-CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHH-----HHHHHhhhhcCccEEEEcCcccccChhhHH
Q 004347 261 V-P-SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVAL-----SDARKYLRHYNWKYLVVDEGHRLKNPKCKL 333 (759)
Q Consensus 261 ~-p-~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~-----~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~ 333 (759)
+ | ..+++++.|....+. ........++++|+||+.+. .. ...+...+|++|||||+|+++|..+..
T Consensus 81 ~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~vvi~ty~~~~~~~~~~~-~~~l~~~~~~~vIvDEaH~~k~~~s~~ 153 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRR------LSKNQLPKYDVVITTYETLRKARKKKD-KEDLKQIKWDRVIVDEAHRLKNKDSKR 153 (299)
T ss_dssp SGT-TS-EEEESSSCHHHH------TTSSSCCCSSEEEEEHHHHH--TSTHT-THHHHTSEEEEEEETTGGGGTTTTSHH
T ss_pred ccccccccccccccccccc------ccccccccceeeecccccccccccccc-ccccccccceeEEEecccccccccccc
Confidence 9 4 678999988872221 12334468899999999998 33 256777889999999999999999999
Q ss_pred HHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 004347 334 LKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAIL 413 (759)
Q Consensus 334 ~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il 413 (759)
++++..+.+.++|+|||||++|++.|+|++++||.|..+.+...|.++|... ...........|..++
T Consensus 154 ~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~------------~~~~~~~~~~~L~~~l 221 (299)
T PF00176_consen 154 YKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP------------DKENSYENIERLRELL 221 (299)
T ss_dssp HHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH------------HHTHHHHHHHHHHHHH
T ss_pred cccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh------------cccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999988433 1223346788999999
Q ss_pred hhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhh
Q 004347 414 RPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLL 493 (759)
Q Consensus 414 ~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~ 493 (759)
+++++||++.++...+|+..+.++.++||+.|+.+|+.+........... ..........++..+.+||++|+||+|+
T Consensus 222 ~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 222 SEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQS--SRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp CCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT---T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred chhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhh--cccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 99999999999988899999999999999999999998766543221110 0123344677888999999999999874
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.5e-41 Score=382.03 Aligned_cols=343 Identities=20% Similarity=0.286 Sum_probs=254.0
Q ss_pred cccCCccchhHHHHHHHHHHHhhcC--CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-HHHHHHHHHHh
Q 004347 184 LLTGGKLKSYQLKGVKWLISLWQNG--LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRF 260 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~~~~--~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~ 260 (759)
+.....|||||.+++.++.. ++ .+|||+++||+|||++++++++.+ .+++|||||..+ +.||.++|.+|
T Consensus 250 L~~~~~LRpYQ~eAl~~~~~---~gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 250 LKPTTQIRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred cccCCCcCHHHHHHHHHHHh---cCCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 34457899999999998863 34 589999999999999999988765 258999999775 79999999999
Q ss_pred C--CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH---------HHhhhhcCccEEEEcCcccccCh
Q 004347 261 V--PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA---------RKYLRHYNWKYLVVDEGHRLKNP 329 (759)
Q Consensus 261 ~--p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~---------~~~l~~~~~~~lIvDEaH~ikn~ 329 (759)
+ +...+..|+|....+ .....+|+|+||+++.... ...|....|++||+||||++.+
T Consensus 322 ~~l~~~~I~~~tg~~k~~-----------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA- 389 (732)
T TIGR00603 322 STIDDSQICRFTSDAKER-----------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA- 389 (732)
T ss_pred cCCCCceEEEEecCcccc-----------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH-
Confidence 6 345666777754321 1134689999999886421 1345566899999999999954
Q ss_pred hhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhc-cCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHH
Q 004347 330 KCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFI-LPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAK 408 (759)
Q Consensus 330 ~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl-~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (759)
....+.+..+.+.+||+|||||.+++- .+..++++ .|.++.
T Consensus 390 -~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye----------------------------------- 431 (732)
T TIGR00603 390 -AMFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLYE----------------------------------- 431 (732)
T ss_pred -HHHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeeee-----------------------------------
Confidence 344556777889999999999998762 23334332 343321
Q ss_pred HHHHhhhHHhhhhhhHHh--hhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHh
Q 004347 409 LHAILRPFLLRRMKSDVE--QMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKN 486 (759)
Q Consensus 409 L~~il~p~~lRR~k~dv~--~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~ 486 (759)
....++. ..|.+.....++|+|++.....|-.. ... . . .+.+
T Consensus 432 -----------~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~---~~~--------------~-k-------~~l~ 475 (732)
T TIGR00603 432 -----------ANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRE---NSR--------------K-R-------MLLY 475 (732)
T ss_pred -----------cCHHHHHhCCccccceEEEEEecCCHHHHHHHHHh---cch--------------h-h-------hHHh
Confidence 1111111 34667777889999998653333211 000 0 0 0000
Q ss_pred cCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCH
Q 004347 487 CNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRL 566 (759)
Q Consensus 487 ~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~ 566 (759)
. .+..|+..+..++..+...++|+||||+++..++.+...| |. ..|+|+++.
T Consensus 476 ~-----------------------~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~ 527 (732)
T TIGR00603 476 V-----------------------MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQ 527 (732)
T ss_pred h-----------------------hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCH
Confidence 1 1224888988888877678999999999998877777666 33 458999999
Q ss_pred HHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCC-CcchhhHHhhhhhhcCCCC-----ceEEEEEee
Q 004347 567 DERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDW-NPQMDLQAMDRCHRIGQTK-----PVHVYRLAT 640 (759)
Q Consensus 567 ~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k-----~V~Vyrli~ 640 (759)
.+|.+++++|+. ++.+.+ |++|++|++|||++.|++||++++++ |+..+.||+||+.|.+..+ +.++|.|++
T Consensus 528 ~ER~~il~~Fr~-~~~i~v-Lv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs 605 (732)
T TIGR00603 528 QERMQILQNFQH-NPKVNT-IFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVS 605 (732)
T ss_pred HHHHHHHHHHHh-CCCccE-EEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEec
Confidence 999999999986 334454 67779999999999999999999986 9999999999999998754 379999999
Q ss_pred CCCHHHHHHH
Q 004347 641 AQSVEGRILK 650 (759)
Q Consensus 641 ~~TvEe~i~~ 650 (759)
.+|.|+..-.
T Consensus 606 ~dT~E~~~s~ 615 (732)
T TIGR00603 606 KDTQEMYYST 615 (732)
T ss_pred CCchHHHHHH
Confidence 9999998754
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=7.2e-36 Score=358.58 Aligned_cols=444 Identities=15% Similarity=0.152 Sum_probs=280.4
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHhCCC--c
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVPS--V 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~--~ 264 (759)
.++|+||...+..++. .++|++++||+|||++++.++..+.. ...+++|||||+ .++.||..++.+++.. .
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH-KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 4789999999888774 38999999999999999888877663 456899999997 5778999999988643 4
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChhhHHHHHH---hcC
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPKCKLLKEL---KYI 340 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~s~~~~~l---~~l 340 (759)
.+..++|........... ...+|+|+|++.+..++.. .+....|++|||||||++.+..+..+..- ...
T Consensus 88 ~v~~~~g~~~~~~r~~~~-------~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~ 160 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELW-------EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDA 160 (773)
T ss_pred eEEEEeCCCCHHHHHHHH-------hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcC
Confidence 777788865433211111 3568999999999877532 33445689999999999986543322221 222
Q ss_pred CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCC----hHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhH
Q 004347 341 PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSS----LEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPF 416 (759)
Q Consensus 341 ~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~----~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~ 416 (759)
+..++++|||||.++ ...+..+++.|....... ..+...++.......... .-......++..+.++
T Consensus 161 ~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v--------~l~~~~~~i~~~l~~~ 231 (773)
T PRK13766 161 KNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRV--------ELPEELKEIRDLLNEA 231 (773)
T ss_pred CCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEe--------CCcHHHHHHHHHHHHH
Confidence 455689999999765 455555555543221110 011222211100000000 0013345677778888
Q ss_pred HhhhhhhHHhhh-CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHh-----------hhhcCCcchhHHHHHHHHHH
Q 004347 417 LLRRMKSDVEQM-LPRKKEIILYATMTEHQRNFQDHLINKTLENHLREK-----------VFSAGRGMKGKLNNLMVQLR 484 (759)
Q Consensus 417 ~lRR~k~dv~~~-LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~l~~Lr 484 (759)
+.++.+...... .++....+....+...+..++..+.......+.... ...........+...+..++
T Consensus 232 ~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~ 311 (773)
T PRK13766 232 LKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLR 311 (773)
T ss_pred HHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 877777655422 222221111112222222222222110000000000 00000000111112222222
Q ss_pred HhcCChhhhh---hhccCCCC---CCchHHHHhhccHHHHHHHHHHHHh--hCCCcEEEEccchhHHHHHHHHHHhcCce
Q 004347 485 KNCNHPDLLE---SAFSDSCF---YPPVEQIVEQCGKFRLLDRLLARLF--ARNHKVLVFSQWTKILDIMEYYFNEKGYE 556 (759)
Q Consensus 485 k~~~hp~l~~---~~~~~~~~---~~~~~~l~~~s~K~~~L~~lL~~l~--~~~~kvLIFsq~~~~ld~L~~~L~~~g~~ 556 (759)
....++.... ..+.+... +.....+....+|+..|.++|.... ..+.|+||||++..+++.|..+|...|++
T Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~ 391 (773)
T PRK13766 312 EEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIK 391 (773)
T ss_pred hhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCc
Confidence 2211100000 00000000 0011112344689999999999877 57899999999999999999999999999
Q ss_pred EEEEeCC--------CCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcC
Q 004347 557 VCRIDGS--------VRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIG 628 (759)
Q Consensus 557 ~~~l~G~--------~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 628 (759)
+..++|. ++..+|.+++++|+++. +. +|++|.++++|+|++.+++||+||++|||..++||.||++|.|
T Consensus 392 ~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~--~~-vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~ 468 (773)
T PRK13766 392 AVRFVGQASKDGDKGMSQKEQIEILDKFRAGE--FN-VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE 468 (773)
T ss_pred eEEEEccccccccCCCCHHHHHHHHHHHHcCC--CC-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC
Confidence 9999997 88899999999999853 33 5899999999999999999999999999999999888888876
Q ss_pred CCCceEEEEEeeCCCHHHHHHHHHHHHHHHH
Q 004347 629 QTKPVHVYRLATAQSVEGRILKRAFSKLKLE 659 (759)
Q Consensus 629 Q~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~ 659 (759)
+ +.||.|++.+|+|+.+|....+|.+..
T Consensus 469 ~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 469 E---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred C---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 5 789999999999999998877766655
No 23
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-31 Score=284.59 Aligned_cols=410 Identities=20% Similarity=0.232 Sum_probs=271.3
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhC--CC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFV--PS 263 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~--p~ 263 (759)
..+.|.||..-+.-.+ ..|.+++.+||||||+.|+.++.....+... .+|+++|+. ++.|...-+.+++ |.
T Consensus 13 ~ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 13 TIEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred cccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 3478999998887777 4599999999999999999888866665433 899999955 7788888888886 45
Q ss_pred ceEEEEeCChh--HHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChhh--HHHHHHh
Q 004347 264 VSAIIYHGSKK--ERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPKC--KLLKELK 338 (759)
Q Consensus 264 ~~~~~~~g~~~--~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~s--~~~~~l~ 338 (759)
..+..+.|.-. +|.... .+..|+++|++.+.+|+.. .+..-.+.++|+|||||.-...+ ...+...
T Consensus 87 ~~i~~ltGev~p~~R~~~w---------~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~ 157 (542)
T COG1111 87 DEIAALTGEVRPEEREELW---------AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYL 157 (542)
T ss_pred hheeeecCCCChHHHHHHH---------hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHH
Confidence 67888888543 333221 3568999999999999743 34455688999999999875433 3334333
Q ss_pred cC-CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 339 YI-PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 339 ~l-~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
.. +..+.++|||||- ++...+...++-|.-+ ...
T Consensus 158 ~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe--------------------------------------------~ve 192 (542)
T COG1111 158 RSAKNPLILGLTASPG-SDLEKIQEVVENLGIE--------------------------------------------KVE 192 (542)
T ss_pred HhccCceEEEEecCCC-CCHHHHHHHHHhCCcc--------------------------------------------eEE
Confidence 33 4456899999993 2333333222222110 001
Q ss_pred hhhh-hhHHhhhCCCceEEEEEecCCHHHHHHHHHH---HHHHHHHHHHHhhhhcCCc--chhHHHHHHHHHHHh-----
Q 004347 418 LRRM-KSDVEQMLPRKKEIILYATMTEHQRNFQDHL---INKTLENHLREKVFSAGRG--MKGKLNNLMVQLRKN----- 486 (759)
Q Consensus 418 lRR~-k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l---~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~Lrk~----- 486 (759)
+|-- -.||..++-.++...+.+++++.-..+-+.+ +...+. .+.......... ....++.+. +.+..
T Consensus 193 vrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk-~L~~~g~~~~~~~~~~kdl~~~~-~~~~~~a~~~ 270 (542)
T COG1111 193 VRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLK-PLKELGVIESSSPVSKKDLLELR-QIRLIMAKNE 270 (542)
T ss_pred EecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHH-HHHHcCceeccCcccHhHHHHHH-HHHHHhccCc
Confidence 1110 1244455555666666677766554433222 111111 111111111111 111111111 10000
Q ss_pred ----------------cCCh-hhhh----------------h-----------hccCCCCCCchHHHH------hhccHH
Q 004347 487 ----------------CNHP-DLLE----------------S-----------AFSDSCFYPPVEQIV------EQCGKF 516 (759)
Q Consensus 487 ----------------~~hp-~l~~----------------~-----------~~~~~~~~~~~~~l~------~~s~K~ 516 (759)
+.|+ .+++ . .+.+..+...+..+. -..+|+
T Consensus 271 ~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl 350 (542)
T COG1111 271 DSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKL 350 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccH
Confidence 0111 0000 0 000000111111111 124799
Q ss_pred HHHHHHHHHHh--hCCCcEEEEccchhHHHHHHHHHHhcCceEE-EEeC--------CCCHHHHHHHHHHhhccCCCceE
Q 004347 517 RLLDRLLARLF--ARNHKVLVFSQWTKILDIMEYYFNEKGYEVC-RIDG--------SVRLDERKRQIQDFNDVNSSYRI 585 (759)
Q Consensus 517 ~~L~~lL~~l~--~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~-~l~G--------~~~~~~R~~~i~~F~~~~~~~~v 585 (759)
..+.+++.+.+ ..+.|+|||++|+++++.|..+|...|.... ++-| +|++.+..++|++|+.+.-+
T Consensus 351 ~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n--- 427 (542)
T COG1111 351 EKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN--- 427 (542)
T ss_pred HHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---
Confidence 99999999887 5678999999999999999999999988775 6655 59999999999999985444
Q ss_pred EEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhc
Q 004347 586 FLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIG 664 (759)
Q Consensus 586 ~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~vi~ 664 (759)
+|++|.+|.+|||++.+|.||+||+.-+|-+.+||+||++|. ++-+||-|+++||-|+.-|....+|.+-....+.
T Consensus 428 VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~ 503 (542)
T COG1111 428 VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIR 503 (542)
T ss_pred EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999994 6778999999999999999999988886665554
No 24
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-32 Score=315.21 Aligned_cols=266 Identities=22% Similarity=0.347 Sum_probs=200.5
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHh------------C----CCCCCeEEEECCccHHHHHHHHHHhCCCc-eEEE
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKG------------N----GLHGPYLVIAPLSTLSNWVNEISRFVPSV-SAII 268 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~------------~----~~~~~~LIV~P~sll~~W~~E~~~~~p~~-~~~~ 268 (759)
..|..+++||+||+|||...+++...-.. . ...|.+|||||.+++.||..||.++++.. +++.
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 34566799999999999997766532211 1 13478999999999999999999999877 9999
Q ss_pred EeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh---------------------hhhcCccEEEEcCccccc
Q 004347 269 YHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY---------------------LRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 269 ~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~---------------------l~~~~~~~lIvDEaH~ik 327 (759)
|.|-...- .......-.||||+|||+.++.++... |..+.|-.|++|||+.+.
T Consensus 452 Y~Girk~~------~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve 525 (1394)
T KOG0298|consen 452 YFGIRKTF------WLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE 525 (1394)
T ss_pred Eechhhhc------ccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc
Confidence 99964321 111122348999999999998875211 445568999999999999
Q ss_pred ChhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHH
Q 004347 328 NPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVA 407 (759)
Q Consensus 328 n~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (759)
...|...+.+..+.+.++|+.||||+|+ +.+|+.||+||.-..|+....|.+..... ........
T Consensus 526 sssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~--------------~~~ra~~~ 590 (1394)
T KOG0298|consen 526 SSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKA--------------YQLRAKCE 590 (1394)
T ss_pred chHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHH--------------HHHHhhhh
Confidence 9999999999999999999999999999 99999999999988899988887765321 11113445
Q ss_pred HHHHHhhhHHhhhhhhHHhhh--CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhh-------------hhcCCcc
Q 004347 408 KLHAILRPFLLRRMKSDVEQM--LPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKV-------------FSAGRGM 472 (759)
Q Consensus 408 ~L~~il~p~~lRR~k~dv~~~--LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~-------------~~~~~~~ 472 (759)
.++.++...+-|+.+.+|... +||-.+.+....+++.+..+|+.........+...-. .+.....
T Consensus 591 ~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~ 670 (1394)
T KOG0298|consen 591 PLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQL 670 (1394)
T ss_pred hHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhh
Confidence 677888888999999888764 6888777777888888888877665444333322111 1112223
Q ss_pred hhHHHHHHHHHHHhcCChhh
Q 004347 473 KGKLNNLMVQLRKNCNHPDL 492 (759)
Q Consensus 473 ~~~l~~~l~~Lrk~~~hp~l 492 (759)
...+.+.+.+||++|+||..
T Consensus 671 ~a~i~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 671 LAIILKWLLRLRQACCHPLV 690 (1394)
T ss_pred HHHHHHHHHHHHHhhccccc
Confidence 46778889999999999954
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=6.5e-31 Score=298.66 Aligned_cols=337 Identities=16% Similarity=0.206 Sum_probs=233.0
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhC--CC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFV--PS 263 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~--p~ 263 (759)
...|+|||.+++..++. +.++|+..+||+|||++++.++..+...+ .+++|||||+. ++.||.++|.+|. |.
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~~-~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLENY-EGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 46899999999987765 67789999999999999877766655543 34899999965 7799999999975 33
Q ss_pred ceE-EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC-C
Q 004347 264 VSA-IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI-P 341 (759)
Q Consensus 264 ~~~-~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l-~ 341 (759)
..+ .++.|.... ...+|+|+||+.+.+....++. +|++|||||||++... .+...+..+ +
T Consensus 187 ~~~~~i~~g~~~~--------------~~~~I~VaT~qsl~~~~~~~~~--~~~~iIvDEaH~~~~~--~~~~il~~~~~ 248 (501)
T PHA02558 187 EAMHKIYSGTAKD--------------TDAPIVVSTWQSAVKQPKEWFD--QFGMVIVDECHLFTGK--SLTSIITKLDN 248 (501)
T ss_pred cceeEEecCcccC--------------CCCCEEEeeHHHHhhchhhhcc--ccCEEEEEchhcccch--hHHHHHHhhhc
Confidence 333 444554311 3468999999998765433443 6799999999999753 344555666 4
Q ss_pred CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Q 004347 342 IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRM 421 (759)
Q Consensus 342 ~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~ 421 (759)
+.++++|||||-..... .+.+..++.|-... -.
T Consensus 249 ~~~~lGLTATp~~~~~~-~~~~~~~fG~i~~~----------------------------------------------v~ 281 (501)
T PHA02558 249 CKFKFGLTGSLRDGKAN-ILQYVGLFGDIFKP----------------------------------------------VT 281 (501)
T ss_pred cceEEEEeccCCCcccc-HHHHHHhhCCceEE----------------------------------------------ec
Confidence 67899999999543221 11111111110000 00
Q ss_pred hhHHh--hhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccC
Q 004347 422 KSDVE--QMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSD 499 (759)
Q Consensus 422 k~dv~--~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~ 499 (759)
..+.. ..+.+.....+.+..++.....+. .. .+..
T Consensus 282 ~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~---~~-------------------~~~~--------------------- 318 (501)
T PHA02558 282 TSQLMEEGQVTDLKINSIFLRYPDEDRVKLK---GE-------------------DYQE--------------------- 318 (501)
T ss_pred HHHHHhCCCcCCceEEEEeccCCHHHhhhhc---cc-------------------chHH---------------------
Confidence 00000 112222223334443332111000 00 0000
Q ss_pred CCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhcc
Q 004347 500 SCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV 579 (759)
Q Consensus 500 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 579 (759)
....+.....+..++.+++..+...+++++||+..+..++.|...|...|+++..++|+++.++|..+++.|+.
T Consensus 319 -----~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~- 392 (501)
T PHA02558 319 -----EIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG- 392 (501)
T ss_pred -----HHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-
Confidence 00111222346667777777777788999999999999999999999999999999999999999999999986
Q ss_pred CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCc-eEEEEEeeCCC
Q 004347 580 NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKP-VHVYRLATAQS 643 (759)
Q Consensus 580 ~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~-V~Vyrli~~~T 643 (759)
+...|++.|++.+|+|+|++.+++||+++++.+...+.|++||++|.|..|+ +.||.|+-.-.
T Consensus 393 -~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 393 -GKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred -CCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 4445555556999999999999999999999999999999999999998776 99999986543
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=7.5e-30 Score=284.40 Aligned_cols=367 Identities=20% Similarity=0.257 Sum_probs=265.3
Q ss_pred cccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC
Q 004347 184 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP 262 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p 262 (759)
......|||||.+++.-+...+.....|++..+||.|||+.++.++..+... +|||||.. ++.||.+.+.+++.
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~-----~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS-----TLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC-----EEEEECcHHHHHHHHHHHHHhcC
Confidence 3345689999999998888776668889999999999999999999887653 99999966 67999988888875
Q ss_pred Cc-eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHH-HHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC
Q 004347 263 SV-SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSD-ARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI 340 (759)
Q Consensus 263 ~~-~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~-~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l 340 (759)
.. .+..+.|....- .+ ..|+|+||+++.+. ....+..-.|++||+||+|++....... .+..+
T Consensus 106 ~~~~~g~~~~~~~~~------------~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~--~~~~~ 170 (442)
T COG1061 106 LNDEIGIYGGGEKEL------------EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR--ILELL 170 (442)
T ss_pred CccccceecCceecc------------CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH--HHHhh
Confidence 43 455566554221 01 46999999999885 2233444479999999999997655432 23334
Q ss_pred CCCc-EEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 004347 341 PIGN-KLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLR 419 (759)
Q Consensus 341 ~~~~-rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lR 419 (759)
...+ +|+|||||...+...+..+..++.| .+..
T Consensus 171 ~~~~~~LGLTATp~R~D~~~~~~l~~~~g~----------------------------------------------~vy~ 204 (442)
T COG1061 171 SAAYPRLGLTATPEREDGGRIGDLFDLIGP----------------------------------------------IVYE 204 (442)
T ss_pred hcccceeeeccCceeecCCchhHHHHhcCC----------------------------------------------eEee
Confidence 4444 9999999975443333333332222 1222
Q ss_pred hhhhH-Hh-hhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 420 RMKSD-VE-QMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 420 R~k~d-v~-~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
....+ +. ..|.|.....+.+.++......|................ .......+.
T Consensus 205 ~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~------------ 261 (442)
T COG1061 205 VSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-----------LRAENEARR------------ 261 (442)
T ss_pred cCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh-----------hhHHHHHHH------------
Confidence 22112 22 457888888999999988888877665443211100000 000000000
Q ss_pred cCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhh
Q 004347 498 SDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 577 (759)
Q Consensus 498 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 577 (759)
.......|+..+..++.... ++.+++||+.+......+...|...|+ +..++|.++..+|..++++|.
T Consensus 262 ----------~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 262 ----------IAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred ----------HhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 11223457778888888766 789999999999999999999998888 899999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhc-CCCCc--eEEEEEeeCCCHHHHHHHHHHH
Q 004347 578 DVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRI-GQTKP--VHVYRLATAQSVEGRILKRAFS 654 (759)
Q Consensus 578 ~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri-GQ~k~--V~Vyrli~~~TvEe~i~~~~~~ 654 (759)
.+. +. +|++++++.+|+|++.++++|+..+.-++..+.|++||+.|. ..+.. +..|-+++.++.+..+......
T Consensus 330 ~g~--~~-~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 330 TGG--IK-VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred cCC--CC-EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 844 33 699999999999999999999999999999999999999994 44444 7888888888888877654443
No 27
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.2e-30 Score=261.21 Aligned_cols=326 Identities=20% Similarity=0.245 Sum_probs=235.9
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCCCCCeEEEECCccHHHHHHH-HHHhCC--
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE-ISRFVP-- 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E-~~~~~p-- 262 (759)
...+.+.|.++++.++. |..+|.+.+||+|||.+ +|.++..|+.....-..||++|+..+.+...| |..+..
T Consensus 81 ~~~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~i 156 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGI 156 (476)
T ss_pred cCCCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhcccc
Confidence 55788999999999986 89999999999999999 88999999987666678999999988776665 555533
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccChh--hHHHHHHh
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKNPK--CKLLKELK 338 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn~~--s~~~~~l~ 338 (759)
++.+.++.|......... ....+++|+|+|++.+...+.+ .|..-...++|+|||+++.|.. -.+...|+
T Consensus 157 glr~~~lvGG~~m~~q~~------~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk 230 (476)
T KOG0330|consen 157 GLRVAVLVGGMDMMLQAN------QLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILK 230 (476)
T ss_pred CeEEEEEecCchHHHHHH------HhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHH
Confidence 456666655554433221 1235789999999999888742 3444566899999999998733 45666666
Q ss_pred cCCCCcE-EEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 339 YIPIGNK-LLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 339 ~l~~~~r-llLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
.++..++ +|.|||-- .+... |...
T Consensus 231 ~ip~erqt~LfsATMt-~kv~k-------------------------------------------------L~ra----- 255 (476)
T KOG0330|consen 231 VIPRERQTFLFSATMT-KKVRK-------------------------------------------------LQRA----- 255 (476)
T ss_pred hcCccceEEEEEeecc-hhhHH-------------------------------------------------HHhh-----
Confidence 6665444 56666631 11111 1000
Q ss_pred hhhhhhHHhhhCCCceE-EEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhh
Q 004347 418 LRRMKSDVEQMLPRKKE-IILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESA 496 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e-~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 496 (759)
.+ .-|.+.. ...|+.++ .|.+- |++
T Consensus 256 ------sl--~~p~~v~~s~ky~tv~---------------------------------------~lkQ~----ylf--- 281 (476)
T KOG0330|consen 256 ------SL--DNPVKVAVSSKYQTVD---------------------------------------HLKQT----YLF--- 281 (476)
T ss_pred ------cc--CCCeEEeccchhcchH---------------------------------------Hhhhh----eEe---
Confidence 00 0010000 00000000 00000 000
Q ss_pred ccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHh
Q 004347 497 FSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDF 576 (759)
Q Consensus 497 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F 576 (759)
+...-|-..|..+|.+. .|..+||||+...+.+.+.-+|+..|+....+||.|++..|...++.|
T Consensus 282 -------------v~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~F 346 (476)
T KOG0330|consen 282 -------------VPGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKF 346 (476)
T ss_pred -------------ccccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHH
Confidence 11123566777888865 578999999999999999999999999999999999999999999999
Q ss_pred hccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHH
Q 004347 577 NDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAF 653 (759)
Q Consensus 577 ~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~ 653 (759)
+++.-+ +|++|++|++|+|++.+|+||+||.|-+...|+||.||++|.| ++-.+..||+. .|-..+++.+
T Consensus 347 k~~~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrIE 416 (476)
T KOG0330|consen 347 KAGARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRIE 416 (476)
T ss_pred hccCCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHHH
Confidence 985444 6999999999999999999999999999999999999999999 77788889998 5555665543
No 28
>PTZ00110 helicase; Provisional
Probab=99.97 E-value=1.8e-28 Score=280.72 Aligned_cols=321 Identities=20% Similarity=0.236 Sum_probs=217.3
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhC-----CCCCCeEEEECCcc-HHHHHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGN-----GLHGPYLVIAPLST-LSNWVNEISR 259 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~-----~~~~~~LIV~P~sl-l~~W~~E~~~ 259 (759)
...++|+|..++..++. |.+.|+..+||+|||++. +.++.++... +....+|||||+.. ..|+..++.+
T Consensus 150 ~~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~ 225 (545)
T PTZ00110 150 FTEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNK 225 (545)
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHH
Confidence 34799999999988875 889999999999999985 4455555432 12234799999774 5778888888
Q ss_pred hCCC--ceEE-EEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh--hHH
Q 004347 260 FVPS--VSAI-IYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKL 333 (759)
Q Consensus 260 ~~p~--~~~~-~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~--s~~ 333 (759)
|... +.+. +|.|.....+. ... ....+|+|+|++.+...+.. .+....+++|||||||++.... ..+
T Consensus 226 ~~~~~~i~~~~~~gg~~~~~q~-~~l------~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i 298 (545)
T PTZ00110 226 FGASSKIRNTVAYGGVPKRGQI-YAL------RRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQI 298 (545)
T ss_pred HhcccCccEEEEeCCCCHHHHH-HHH------HcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHH
Confidence 8643 3444 44444433222 111 13578999999998766532 2223357899999999987533 334
Q ss_pred HHHHhcCC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 004347 334 LKELKYIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAI 412 (759)
Q Consensus 334 ~~~l~~l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i 412 (759)
.+.+..++ ....+++|||.- .++..+.. ++...
T Consensus 299 ~~il~~~~~~~q~l~~SAT~p----~~v~~l~~---------------~l~~~--------------------------- 332 (545)
T PTZ00110 299 RKIVSQIRPDRQTLMWSATWP----KEVQSLAR---------------DLCKE--------------------------- 332 (545)
T ss_pred HHHHHhCCCCCeEEEEEeCCC----HHHHHHHH---------------HHhcc---------------------------
Confidence 45555554 345689999951 11111110 00000
Q ss_pred hhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhh
Q 004347 413 LRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDL 492 (759)
Q Consensus 413 l~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 492 (759)
.|..+.. ..+...........+.+
T Consensus 333 -~~v~i~v--g~~~l~~~~~i~q~~~~----------------------------------------------------- 356 (545)
T PTZ00110 333 -EPVHVNV--GSLDLTACHNIKQEVFV----------------------------------------------------- 356 (545)
T ss_pred -CCEEEEE--CCCccccCCCeeEEEEE-----------------------------------------------------
Confidence 0000000 00000000000001100
Q ss_pred hhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHH
Q 004347 493 LESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQ 572 (759)
Q Consensus 493 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 572 (759)
+....|...|..++..+...+.++||||+....++.|...|...|+++..+||++++.+|..+
T Consensus 357 -----------------~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~i 419 (545)
T PTZ00110 357 -----------------VEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWV 419 (545)
T ss_pred -----------------EechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHH
Confidence 011225556666776666578899999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 573 IQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 573 i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
++.|+++... +|++|+++++|||++.+++||+||.|+++..|.||+||++|.|.+- .+|.|++.+
T Consensus 420 l~~F~~G~~~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G--~ai~~~~~~ 484 (545)
T PTZ00110 420 LNEFKTGKSP---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKG--ASYTFLTPD 484 (545)
T ss_pred HHHHhcCCCc---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc--eEEEEECcc
Confidence 9999974433 5999999999999999999999999999999999999999999764 446667665
No 29
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.4e-28 Score=266.14 Aligned_cols=320 Identities=23% Similarity=0.303 Sum_probs=228.9
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHh------CCCCCCeEEEECCccHH-HHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKG------NGLHGPYLVIAPLSTLS-NWVNEIS 258 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~------~~~~~~~LIV~P~sll~-~W~~E~~ 258 (759)
...+.|.|..+...++. |++++..+.+|+|||+. .|..|.++.. ++....+||++|+..+. |-..++.
T Consensus 111 ~~~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~ 186 (519)
T KOG0331|consen 111 FEKPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAR 186 (519)
T ss_pred CCCCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHH
Confidence 34788999999888887 99999999999999999 6677777765 22223489999999775 5666777
Q ss_pred HhCCCc---eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCccccc--ChhhH
Q 004347 259 RFVPSV---SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLK--NPKCK 332 (759)
Q Consensus 259 ~~~p~~---~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ik--n~~s~ 332 (759)
.|.... .+++|.|.....+. +. .....+|+|+|++.+...+.. .+...+..|+|+|||+++. ....+
T Consensus 187 ~~~~~~~~~~~cvyGG~~~~~Q~-~~------l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~q 259 (519)
T KOG0331|consen 187 EFGKSLRLRSTCVYGGAPKGPQL-RD------LERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQ 259 (519)
T ss_pred HHcCCCCccEEEEeCCCCccHHH-HH------HhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHH
Confidence 776544 45566665544333 22 225789999999999887632 4555567899999999996 45566
Q ss_pred HHHHHhcC-CCCc-EEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHH
Q 004347 333 LLKELKYI-PIGN-KLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLH 410 (759)
Q Consensus 333 ~~~~l~~l-~~~~-rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 410 (759)
+-+.+..+ ++.. .++-|||- ..
T Consensus 260 I~~Il~~i~~~~rQtlm~saTw--------------------------p~------------------------------ 283 (519)
T KOG0331|consen 260 IRKILSQIPRPDRQTLMFSATW--------------------------PK------------------------------ 283 (519)
T ss_pred HHHHHHhcCCCcccEEEEeeec--------------------------cH------------------------------
Confidence 77777777 3332 56667772 00
Q ss_pred HHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCh
Q 004347 411 AILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHP 490 (759)
Q Consensus 411 ~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp 490 (759)
-+|.+..+... -|- ...+.... .+ .....+.++-..|+
T Consensus 284 ------~v~~lA~~fl~-~~~-~i~ig~~~---~~-----------------------------~a~~~i~qive~~~-- 321 (519)
T KOG0331|consen 284 ------EVRQLAEDFLN-NPI-QINVGNKK---EL-----------------------------KANHNIRQIVEVCD-- 321 (519)
T ss_pred ------HHHHHHHHHhc-Cce-EEEecchh---hh-----------------------------hhhcchhhhhhhcC--
Confidence 11111112211 111 11111110 00 00001112222222
Q ss_pred hhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHh-hCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHH
Q 004347 491 DLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLF-ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDER 569 (759)
Q Consensus 491 ~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~-~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R 569 (759)
...|...|..+|.... ..+.|+||||......+.|...|...++++..|||..++.+|
T Consensus 322 ---------------------~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 322 ---------------------ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSER 380 (519)
T ss_pred ---------------------HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHH
Confidence 2458888888888876 456799999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeC
Q 004347 570 KRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA 641 (759)
Q Consensus 570 ~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 641 (759)
..+++.|.+++.. +|++|+++++|||++.+++||+||+|-|...|+||+||++|.|++-. .|.|++.
T Consensus 381 ~~~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~--A~tfft~ 447 (519)
T KOG0331|consen 381 DWVLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGT--AITFFTS 447 (519)
T ss_pred HHHHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCce--EEEEEeH
Confidence 9999999986555 79999999999999999999999999999999999999999887654 3444443
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.3e-27 Score=270.18 Aligned_cols=310 Identities=17% Similarity=0.180 Sum_probs=214.9
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCC
Q 004347 185 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPS 263 (759)
Q Consensus 185 ~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~ 263 (759)
+....++|+|.++++.++. +.++++..+||+|||+..+.-+ +.. .+..|||+|+. ++.+|...+..+.
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~--l~~---~~~~lVi~P~~~L~~dq~~~l~~~g-- 75 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPA--LCS---DGITLVISPLISLMEDQVLQLKASG-- 75 (470)
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHH--HHc---CCcEEEEecHHHHHHHHHHHHHHcC--
Confidence 3446899999999999876 7899999999999998753222 222 35799999966 5577888887653
Q ss_pred ceEEEEeCChhHH--HHHHHhcCCCCCCCCCCEEEecHHHHHHHH--HHhh-hhcCccEEEEcCcccccChh-------h
Q 004347 264 VSAIIYHGSKKER--DEIRRKHMPRAIGPKFPIVVTSYEVALSDA--RKYL-RHYNWKYLVVDEGHRLKNPK-------C 331 (759)
Q Consensus 264 ~~~~~~~g~~~~r--~~~~~~~~~~~~~~~~~vvIttye~l~~~~--~~~l-~~~~~~~lIvDEaH~ikn~~-------s 331 (759)
+.+..+.+..... ..+.... ..+.++++++|++.+.... ...+ ...++.+|||||||++.... .
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~----~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~ 151 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDL----KDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYK 151 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHH----hcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHH
Confidence 4455555544322 2221111 2356899999999876432 2233 44578999999999986532 1
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 004347 332 KLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHA 411 (759)
Q Consensus 332 ~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 411 (759)
.+......++....++|||||-.....++...+++-.|.++... |
T Consensus 152 ~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~----------------------------- 196 (470)
T TIGR00614 152 ALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------F----------------------------- 196 (470)
T ss_pred HHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------C-----------------------------
Confidence 22333345667788999999976655666655554433221100 0
Q ss_pred HhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChh
Q 004347 412 ILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPD 491 (759)
Q Consensus 412 il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~ 491 (759)
.-|.. ...+.-...
T Consensus 197 ----------------~r~nl-~~~v~~~~~------------------------------------------------- 210 (470)
T TIGR00614 197 ----------------DRPNL-YYEVRRKTP------------------------------------------------- 210 (470)
T ss_pred ----------------CCCCc-EEEEEeCCc-------------------------------------------------
Confidence 00110 011100000
Q ss_pred hhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHH
Q 004347 492 LLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKR 571 (759)
Q Consensus 492 l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~ 571 (759)
..+..+..++.. ...+.++||||......+.+...|...|+.+..+||+++..+|..
T Consensus 211 ----------------------~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~ 267 (470)
T TIGR00614 211 ----------------------KILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDD 267 (470)
T ss_pred ----------------------cHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHH
Confidence 011111122211 124677899999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 572 QIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 572 ~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
+++.|.++ .++ +|++|.++|+|||++++++||+||+|.++..|.|++||++|.|+...+.+|
T Consensus 268 i~~~F~~g--~~~-vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 268 VHHKFQRD--EIQ-VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred HHHHHHcC--CCc-EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 99999974 444 589999999999999999999999999999999999999999988775554
No 31
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.96 E-value=1.3e-27 Score=270.27 Aligned_cols=317 Identities=20% Similarity=0.299 Sum_probs=218.6
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhC---
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFV--- 261 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~--- 261 (759)
...+.|+|.++++.++. |.+.|+..+||+|||++. ++++..+........+||+||+. +..||.+++..+.
T Consensus 24 ~~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 99 (460)
T PRK11776 24 YTEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFI 99 (460)
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Confidence 34689999999998875 889999999999999884 45555554333334689999977 4578888887764
Q ss_pred CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh--hhHHHHHHh
Q 004347 262 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP--KCKLLKELK 338 (759)
Q Consensus 262 p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~--~s~~~~~l~ 338 (759)
+...+..++|........... ....+|+|+|++.+...+.. .+....+++||+||||++.+. ...+...+.
T Consensus 100 ~~~~v~~~~Gg~~~~~~~~~l------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~ 173 (460)
T PRK11776 100 PNIKVLTLCGGVPMGPQIDSL------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIR 173 (460)
T ss_pred CCcEEEEEECCCChHHHHHHh------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHH
Confidence 467777777765443332221 14679999999998776532 233345789999999998653 234445555
Q ss_pred cCCC-CcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 339 YIPI-GNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 339 ~l~~-~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
.++. ...+++|||+-. .+..+ ...|.. .|..
T Consensus 174 ~~~~~~q~ll~SAT~~~-~~~~l------------------~~~~~~-----------------------------~~~~ 205 (460)
T PRK11776 174 QAPARRQTLLFSATYPE-GIAAI------------------SQRFQR-----------------------------DPVE 205 (460)
T ss_pred hCCcccEEEEEEecCcH-HHHHH------------------HHHhcC-----------------------------CCEE
Confidence 5543 456999999721 11111 111000 0000
Q ss_pred hhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 418 LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
+.- ......+......+.+..
T Consensus 206 i~~---~~~~~~~~i~~~~~~~~~-------------------------------------------------------- 226 (460)
T PRK11776 206 VKV---ESTHDLPAIEQRFYEVSP-------------------------------------------------------- 226 (460)
T ss_pred EEE---CcCCCCCCeeEEEEEeCc--------------------------------------------------------
Confidence 000 000001111111111110
Q ss_pred cCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhh
Q 004347 498 SDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 577 (759)
Q Consensus 498 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 577 (759)
..|+..|..++... .+.++||||+....++.+...|...|+.+..+||++++.+|..+++.|+
T Consensus 227 ---------------~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~ 289 (460)
T PRK11776 227 ---------------DERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFA 289 (460)
T ss_pred ---------------HHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 11445555555432 4568999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 578 DVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 578 ~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
++... +|++|+++++|||++++++||+||.|.++..|.||+||++|.|+.- .+|.|++.+
T Consensus 290 ~g~~~---vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 290 NRSCS---VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred cCCCc---EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 74433 5999999999999999999999999999999999999999999764 456666654
No 32
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.96 E-value=2.4e-27 Score=270.58 Aligned_cols=317 Identities=16% Similarity=0.191 Sum_probs=213.7
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHh-------CCCCCCeEEEECCccH-HHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKG-------NGLHGPYLVIAPLSTL-SNWVNEI 257 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~-------~~~~~~~LIV~P~sll-~~W~~E~ 257 (759)
...++|+|..++..++. |.+.|+..+||+|||+..+ .++.++.. .+....+|||+|+..| .|+.+++
T Consensus 141 ~~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~ 216 (518)
T PLN00206 141 YEFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQA 216 (518)
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHH
Confidence 35799999999998875 8899999999999999854 44554432 1123468999998754 6677777
Q ss_pred HHhCCC--ce-EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccC--hhh
Q 004347 258 SRFVPS--VS-AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKC 331 (759)
Q Consensus 258 ~~~~p~--~~-~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn--~~s 331 (759)
..+... +. +.++.|....... .. ....++|+|+|++.+...+.. .+...+..+|||||||++.. ...
T Consensus 217 ~~l~~~~~~~~~~~~gG~~~~~q~-~~------l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~ 289 (518)
T PLN00206 217 KVLGKGLPFKTALVVGGDAMPQQL-YR------IQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRD 289 (518)
T ss_pred HHHhCCCCceEEEEECCcchHHHH-HH------hcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHH
Confidence 776533 33 4455555433322 11 124579999999998765432 23334568999999999864 334
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 004347 332 KLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHA 411 (759)
Q Consensus 332 ~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 411 (759)
.+...+..++....+++|||.-+ ....+ ...+...
T Consensus 290 ~i~~i~~~l~~~q~l~~SATl~~-~v~~l---~~~~~~~----------------------------------------- 324 (518)
T PLN00206 290 QVMQIFQALSQPQVLLFSATVSP-EVEKF---ASSLAKD----------------------------------------- 324 (518)
T ss_pred HHHHHHHhCCCCcEEEEEeeCCH-HHHHH---HHHhCCC-----------------------------------------
Confidence 45566667777888999999632 11111 1110000
Q ss_pred HhhhHHhhhhhhHHhhhCCCc--eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCC
Q 004347 412 ILRPFLLRRMKSDVEQMLPRK--KEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNH 489 (759)
Q Consensus 412 il~p~~lRR~k~dv~~~LP~k--~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 489 (759)
+..+.... ...|.. ....+++.-.
T Consensus 325 ---~~~i~~~~----~~~~~~~v~q~~~~~~~~----------------------------------------------- 350 (518)
T PLN00206 325 ---IILISIGN----PNRPNKAVKQLAIWVETK----------------------------------------------- 350 (518)
T ss_pred ---CEEEEeCC----CCCCCcceeEEEEeccch-----------------------------------------------
Confidence 00000000 001111 1122222111
Q ss_pred hhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHh-cCceEEEEeCCCCHHH
Q 004347 490 PDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNE-KGYEVCRIDGSVRLDE 568 (759)
Q Consensus 490 p~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~-~g~~~~~l~G~~~~~~ 568 (759)
.|...|.+++........++|||++....++.|...|.. .|+.+..+||+++..+
T Consensus 351 ------------------------~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~e 406 (518)
T PLN00206 351 ------------------------QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKE 406 (518)
T ss_pred ------------------------hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHH
Confidence 122233344433323346899999999999999999975 5999999999999999
Q ss_pred HHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 569 RKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 569 R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
|..+++.|.++. ++ +|++|+++++|||++.+++||+||+|.++..|.||+||++|.|.. -.++.|++.+
T Consensus 407 R~~il~~Fr~G~--~~-ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~--G~ai~f~~~~ 475 (518)
T PLN00206 407 RREVMKSFLVGE--VP-VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK--GTAIVFVNEE 475 (518)
T ss_pred HHHHHHHHHCCC--CC-EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC--eEEEEEEchh
Confidence 999999999854 44 599999999999999999999999999999999999999999965 3455566654
No 33
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.96 E-value=2.6e-27 Score=266.94 Aligned_cols=324 Identities=17% Similarity=0.264 Sum_probs=213.5
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhCC------CCCCeEEEECCc-cHHHHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNG------LHGPYLVIAPLS-TLSNWVNEIS 258 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~~------~~~~~LIV~P~s-ll~~W~~E~~ 258 (759)
...++|+|.+++..++. +.+.|+..+||+|||+..+ .++..+.... ....+|||||+. +..||.+++.
T Consensus 21 ~~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~ 96 (456)
T PRK10590 21 YREPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVR 96 (456)
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHH
Confidence 35789999999998875 8899999999999999854 4455544321 112589999977 4578888888
Q ss_pred HhCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh--hHH
Q 004347 259 RFVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKL 333 (759)
Q Consensus 259 ~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~--s~~ 333 (759)
.+.. .+.+..+.|.......... ....++|+|+|++.+...... .+....+++|||||||++.... ..+
T Consensus 97 ~~~~~~~~~~~~~~gg~~~~~~~~~------l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i 170 (456)
T PRK10590 97 DYSKYLNIRSLVVFGGVSINPQMMK------LRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDI 170 (456)
T ss_pred HHhccCCCEEEEEECCcCHHHHHHH------HcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHH
Confidence 8754 3455555554433222211 124679999999998765422 2334467899999999986533 334
Q ss_pred HHHHhcCCCC-cEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 004347 334 LKELKYIPIG-NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAI 412 (759)
Q Consensus 334 ~~~l~~l~~~-~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i 412 (759)
...+..++.. ..+++|||+-. ...++.. .+.. .
T Consensus 171 ~~il~~l~~~~q~l~~SAT~~~-~~~~l~~---~~~~--------------~---------------------------- 204 (456)
T PRK10590 171 RRVLAKLPAKRQNLLFSATFSD-DIKALAE---KLLH--------------N---------------------------- 204 (456)
T ss_pred HHHHHhCCccCeEEEEeCCCcH-HHHHHHH---HHcC--------------C----------------------------
Confidence 4445555443 46999999631 1111111 0000 0
Q ss_pred hhhHHhhhhhhHHhhhCCCc-eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChh
Q 004347 413 LRPFLLRRMKSDVEQMLPRK-KEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPD 491 (759)
Q Consensus 413 l~p~~lRR~k~dv~~~LP~k-~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~ 491 (759)
|..+.-... ...++. .....++. .
T Consensus 205 --~~~i~~~~~---~~~~~~i~~~~~~~~--~------------------------------------------------ 229 (456)
T PRK10590 205 --PLEIEVARR---NTASEQVTQHVHFVD--K------------------------------------------------ 229 (456)
T ss_pred --CeEEEEecc---cccccceeEEEEEcC--H------------------------------------------------
Confidence 000000000 000111 11111111 0
Q ss_pred hhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHH
Q 004347 492 LLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKR 571 (759)
Q Consensus 492 l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~ 571 (759)
..|..+|..++.. ....++||||+.....+.|...|...|+.+..+||+++..+|..
T Consensus 230 ---------------------~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~ 286 (456)
T PRK10590 230 ---------------------KRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTR 286 (456)
T ss_pred ---------------------HHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Confidence 0122222333322 23568999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHH
Q 004347 572 QIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKR 651 (759)
Q Consensus 572 ~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~ 651 (759)
+++.|.++ .++ +|++|+++++|||++++++||+||+|.++..|.|++||++|.|....+ +.|++.+ |..++..
T Consensus 287 ~l~~F~~g--~~~-iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~a--i~l~~~~--d~~~~~~ 359 (456)
T PRK10590 287 ALADFKSG--DIR-VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEA--LSLVCVD--EHKLLRD 359 (456)
T ss_pred HHHHHHcC--CCc-EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeE--EEEecHH--HHHHHHH
Confidence 99999974 444 599999999999999999999999999999999999999999976543 3345443 4444443
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=2.5e-27 Score=265.15 Aligned_cols=316 Identities=17% Similarity=0.203 Sum_probs=212.3
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhCC-------CCCCeEEEECCcc-HHHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNG-------LHGPYLVIAPLST-LSNWVNEI 257 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~~-------~~~~~LIV~P~sl-l~~W~~E~ 257 (759)
...+.|+|.+++..++. |.+.|+..+||+|||++.+ +++..+.... ....+|||||+.. ..||.+++
T Consensus 28 ~~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~ 103 (423)
T PRK04837 28 FHNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADA 103 (423)
T ss_pred CCCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHH
Confidence 34788999999998875 8899999999999999854 4444454321 1235899999775 47787777
Q ss_pred HHhCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh--hH
Q 004347 258 SRFVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CK 332 (759)
Q Consensus 258 ~~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~--s~ 332 (759)
..+.. ++.+..++|.......... ....++|+|+|++.+...+.. .+....+++|||||||++.+.. ..
T Consensus 104 ~~l~~~~~~~v~~~~gg~~~~~~~~~------l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~ 177 (423)
T PRK04837 104 EPLAQATGLKLGLAYGGDGYDKQLKV------LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKD 177 (423)
T ss_pred HHHhccCCceEEEEECCCCHHHHHHH------hcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHH
Confidence 77643 4566666665433222221 124579999999998766532 3444567899999999986533 23
Q ss_pred HHHHHhcCCC---CcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 004347 333 LLKELKYIPI---GNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKL 409 (759)
Q Consensus 333 ~~~~l~~l~~---~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L 409 (759)
+...+..++. ...+++|||.-. ...++.. .++ .
T Consensus 178 i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~~~--~~~---------------~-------------------------- 213 (423)
T PRK04837 178 IRWLFRRMPPANQRLNMLFSATLSY-RVRELAF--EHM---------------N-------------------------- 213 (423)
T ss_pred HHHHHHhCCCccceeEEEEeccCCH-HHHHHHH--HHC---------------C--------------------------
Confidence 3334444432 335888999621 1111100 000 0
Q ss_pred HHHhhhHHhhhhhhHHhhhCCCc-eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcC
Q 004347 410 HAILRPFLLRRMKSDVEQMLPRK-KEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCN 488 (759)
Q Consensus 410 ~~il~p~~lRR~k~dv~~~LP~k-~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~ 488 (759)
.|..+.-.. . ...... ....+++
T Consensus 214 ----~p~~i~v~~-~--~~~~~~i~~~~~~~------------------------------------------------- 237 (423)
T PRK04837 214 ----NPEYVEVEP-E--QKTGHRIKEELFYP------------------------------------------------- 237 (423)
T ss_pred ----CCEEEEEcC-C--CcCCCceeEEEEeC-------------------------------------------------
Confidence 000000000 0 000000 0011110
Q ss_pred ChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHH
Q 004347 489 HPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDE 568 (759)
Q Consensus 489 hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~ 568 (759)
....|+..|..++... ...++||||+....++.+...|...|+++..+||+++..+
T Consensus 238 ----------------------~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~ 293 (423)
T PRK04837 238 ----------------------SNEEKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKK 293 (423)
T ss_pred ----------------------CHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhH
Confidence 0012455555555432 4678999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeC
Q 004347 569 RKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA 641 (759)
Q Consensus 569 R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 641 (759)
|..+++.|++++.. +|++|+++++|||++++++||+||+|+++..|.||+||++|.|+.-. ++.|++.
T Consensus 294 R~~~l~~F~~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 294 RLRILEEFTRGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred HHHHHHHHHcCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 99999999975444 59999999999999999999999999999999999999999996644 4556655
No 35
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=7.3e-27 Score=268.33 Aligned_cols=317 Identities=16% Similarity=0.222 Sum_probs=212.9
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHH-HHHHHHhCC-------CCCCeEEEECCcc-HHHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIA-FLAHLKGNG-------LHGPYLVIAPLST-LSNWVNEI 257 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~-li~~l~~~~-------~~~~~LIV~P~sl-l~~W~~E~ 257 (759)
...++|+|..++..++. |.+.|+..+||+|||+..+. ++..+.... ...++|||||+.. ..|+.+.+
T Consensus 29 ~~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~ 104 (572)
T PRK04537 29 FTRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDA 104 (572)
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHH
Confidence 35789999999999885 88999999999999998644 444444321 1247999999774 57788888
Q ss_pred HHhCCC--ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccCh--hh
Q 004347 258 SRFVPS--VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKNP--KC 331 (759)
Q Consensus 258 ~~~~p~--~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn~--~s 331 (759)
.+|... +.+..++|.......... ....++|+|+|++.+...+.. .+....+++|||||||++... ..
T Consensus 105 ~~l~~~~~i~v~~l~Gg~~~~~q~~~------l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~ 178 (572)
T PRK04537 105 VKFGADLGLRFALVYGGVDYDKQREL------LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIK 178 (572)
T ss_pred HHHhccCCceEEEEECCCCHHHHHHH------HhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHH
Confidence 888643 456666665433222111 113578999999998776532 233445689999999998642 22
Q ss_pred HHHHHHhcCC---CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHH
Q 004347 332 KLLKELKYIP---IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAK 408 (759)
Q Consensus 332 ~~~~~l~~l~---~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (759)
.+...+..++ ....+++|||.-. .+.++.. .++.
T Consensus 179 ~i~~il~~lp~~~~~q~ll~SATl~~-~v~~l~~-----------------~~l~------------------------- 215 (572)
T PRK04537 179 DIRFLLRRMPERGTRQTLLFSATLSH-RVLELAY-----------------EHMN------------------------- 215 (572)
T ss_pred HHHHHHHhcccccCceEEEEeCCccH-HHHHHHH-----------------HHhc-------------------------
Confidence 3334444444 3457899999521 1111100 0000
Q ss_pred HHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcC
Q 004347 409 LHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCN 488 (759)
Q Consensus 409 L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~ 488 (759)
.|..+.... ....+......+++.-
T Consensus 216 -----~p~~i~v~~---~~~~~~~i~q~~~~~~----------------------------------------------- 240 (572)
T PRK04537 216 -----EPEKLVVET---ETITAARVRQRIYFPA----------------------------------------------- 240 (572)
T ss_pred -----CCcEEEecc---ccccccceeEEEEecC-----------------------------------------------
Confidence 000000000 0000111111111100
Q ss_pred ChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHH
Q 004347 489 HPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDE 568 (759)
Q Consensus 489 hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~ 568 (759)
...|+..|..++.. ..+.++||||+....++.|...|...|+.++.+||+++..+
T Consensus 241 -----------------------~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~e 295 (572)
T PRK04537 241 -----------------------DEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKK 295 (572)
T ss_pred -----------------------HHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 01133444444433 24789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeC
Q 004347 569 RKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA 641 (759)
Q Consensus 569 R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 641 (759)
|..+++.|+++. ++ +||+|+++++|||++.+++||+||.||++..|.||+||++|.|....+ +.|++.
T Consensus 296 R~~il~~Fr~G~--~~-VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 296 RESLLNRFQKGQ--LE-ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred HHHHHHHHHcCC--Ce-EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE--EEEecH
Confidence 999999999744 33 599999999999999999999999999999999999999999976543 445544
No 36
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.96 E-value=1e-26 Score=261.30 Aligned_cols=315 Identities=16% Similarity=0.200 Sum_probs=210.6
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHh----CCCCCCeEEEECCc-cHHHHHHHHHHh
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKG----NGLHGPYLVIAPLS-TLSNWVNEISRF 260 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~----~~~~~~~LIV~P~s-ll~~W~~E~~~~ 260 (759)
...++|+|.+++..++. +.++|+..+||+|||++.+ .++..+.. .+...++||++|+. +..|+.+.+..+
T Consensus 21 ~~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l 96 (434)
T PRK11192 21 YTRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQAREL 96 (434)
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHH
Confidence 45789999999998875 7889999999999999854 34445443 12234799999977 456777777766
Q ss_pred CC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh--hHHHH
Q 004347 261 VP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKLLK 335 (759)
Q Consensus 261 ~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~--s~~~~ 335 (759)
.. +..+..++|.......... ....++|+|+|++.+...+.. .+....+++|||||||++.... ..+..
T Consensus 97 ~~~~~~~v~~~~gg~~~~~~~~~------l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~ 170 (434)
T PRK11192 97 AKHTHLDIATITGGVAYMNHAEV------FSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIET 170 (434)
T ss_pred HccCCcEEEEEECCCCHHHHHHH------hcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHH
Confidence 43 4667777775543322111 124678999999998766532 2333457899999999986532 23333
Q ss_pred HHhcCC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 004347 336 ELKYIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILR 414 (759)
Q Consensus 336 ~l~~l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~ 414 (759)
.+..++ ....+++|||+-...+.+ |..++.. .
T Consensus 171 i~~~~~~~~q~~~~SAT~~~~~~~~------------------~~~~~~~-----------------------------~ 203 (434)
T PRK11192 171 IAAETRWRKQTLLFSATLEGDAVQD------------------FAERLLN-----------------------------D 203 (434)
T ss_pred HHHhCccccEEEEEEeecCHHHHHH------------------HHHHHcc-----------------------------C
Confidence 333333 234589999974221211 1111100 0
Q ss_pred hHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhh
Q 004347 415 PFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLE 494 (759)
Q Consensus 415 p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~ 494 (759)
|..+.- .............++. ..
T Consensus 204 ~~~i~~---~~~~~~~~~i~~~~~~-~~---------------------------------------------------- 227 (434)
T PRK11192 204 PVEVEA---EPSRRERKKIHQWYYR-AD---------------------------------------------------- 227 (434)
T ss_pred CEEEEe---cCCcccccCceEEEEE-eC----------------------------------------------------
Confidence 000000 0000000000000000 00
Q ss_pred hhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHH
Q 004347 495 SAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQ 574 (759)
Q Consensus 495 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 574 (759)
....|..+|..++.. ....++||||+....++.|...|...|+.+..+||+++..+|..+++
T Consensus 228 ----------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~ 289 (434)
T PRK11192 228 ----------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIK 289 (434)
T ss_pred ----------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 001244445555442 24678999999999999999999999999999999999999999999
Q ss_pred HhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEE
Q 004347 575 DFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHV 635 (759)
Q Consensus 575 ~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 635 (759)
.|+++. ++ +|++|+++++|||++.+++||+||+|+++..|.||+||++|.|....+.+
T Consensus 290 ~f~~G~--~~-vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 290 RLTDGR--VN-VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred HHhCCC--Cc-EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 999744 33 59999999999999999999999999999999999999999997655443
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.95 E-value=1.3e-26 Score=267.59 Aligned_cols=311 Identities=18% Similarity=0.212 Sum_probs=213.8
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHh---C
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRF---V 261 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~---~ 261 (759)
...++|+|.+++..++. +.+.|+..+||+|||++. +.++..+........+||+||+. +..||..++.+| .
T Consensus 26 ~~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~ 101 (629)
T PRK11634 26 YEKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHM 101 (629)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhc
Confidence 45799999999998875 789999999999999985 45555554433344689999977 457888887766 3
Q ss_pred CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh--hHHHHHHh
Q 004347 262 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKLLKELK 338 (759)
Q Consensus 262 p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~--s~~~~~l~ 338 (759)
+.+.++.++|.......++.. ....+|||+|++.+...+.. .+...++.+|||||||.+.+.. ..+...+.
T Consensus 102 ~~i~v~~~~gG~~~~~q~~~l------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~ 175 (629)
T PRK11634 102 RGVNVVALYGGQRYDVQLRAL------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 (629)
T ss_pred CCceEEEEECCcCHHHHHHHh------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHH
Confidence 567777766655433322221 24678999999998776532 2334467899999999886433 34555566
Q ss_pred cCCCC-cEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 339 YIPIG-NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 339 ~l~~~-~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
.++.. ..+++|||.- .....+. ..|.. .|..
T Consensus 176 ~lp~~~q~llfSAT~p-~~i~~i~------------------~~~l~-----------------------------~~~~ 207 (629)
T PRK11634 176 QIPEGHQTALFSATMP-EAIRRIT------------------RRFMK-----------------------------EPQE 207 (629)
T ss_pred hCCCCCeEEEEEccCC-hhHHHHH------------------HHHcC-----------------------------CCeE
Confidence 66543 4589999952 1111110 00000 0000
Q ss_pred hhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 418 LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
+.-. .. ....|......+.+
T Consensus 208 i~i~-~~-~~~~~~i~q~~~~v---------------------------------------------------------- 227 (629)
T PRK11634 208 VRIQ-SS-VTTRPDISQSYWTV---------------------------------------------------------- 227 (629)
T ss_pred EEcc-Cc-cccCCceEEEEEEe----------------------------------------------------------
Confidence 0000 00 00011111111100
Q ss_pred cCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhh
Q 004347 498 SDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 577 (759)
Q Consensus 498 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 577 (759)
....|...|..+|... ...++||||+.....+.|...|...|+.+..+||.+++.+|..++++|.
T Consensus 228 -------------~~~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr 292 (629)
T PRK11634 228 -------------WGMRKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 (629)
T ss_pred -------------chhhHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHh
Confidence 0112444555555432 3468999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCce
Q 004347 578 DVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPV 633 (759)
Q Consensus 578 ~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 633 (759)
++... +||+|+++++|||++.+++||+||+|.++..|.||+||++|.|..-.+
T Consensus 293 ~G~~~---ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~a 345 (629)
T PRK11634 293 DGRLD---ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRA 345 (629)
T ss_pred CCCCC---EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceE
Confidence 75444 699999999999999999999999999999999999999999976543
No 38
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=1.1e-26 Score=263.64 Aligned_cols=319 Identities=18% Similarity=0.256 Sum_probs=212.3
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCC-------CCCeEEEECCc-cHHHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGL-------HGPYLVIAPLS-TLSNWVNEI 257 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~~~-------~~~~LIV~P~s-ll~~W~~E~ 257 (759)
-..++|||.++++.++. |.+.|++..||+|||+.. +.++..+..... ....|||+|+. +..||.+.+
T Consensus 107 ~~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~ 182 (475)
T PRK01297 107 FPYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDA 182 (475)
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHH
Confidence 35799999999988765 889999999999999885 445555544321 34689999977 456788888
Q ss_pred HHhCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh--hH
Q 004347 258 SRFVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CK 332 (759)
Q Consensus 258 ~~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~--s~ 332 (759)
..+.. +..+..++|........+.. ....++|+|+|++++...... .+...++++|||||+|++.+.. ..
T Consensus 183 ~~l~~~~~~~v~~~~gg~~~~~~~~~~-----~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~ 257 (475)
T PRK01297 183 AALTKYTGLNVMTFVGGMDFDKQLKQL-----EARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQ 257 (475)
T ss_pred HHhhccCCCEEEEEEccCChHHHHHHH-----hCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHH
Confidence 77653 45666677654332222211 124678999999998665422 1222356899999999997533 22
Q ss_pred HHHHHhcCC---CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 004347 333 LLKELKYIP---IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKL 409 (759)
Q Consensus 333 ~~~~l~~l~---~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L 409 (759)
+.+.+..+. ....+++|||... +..++.. .|..
T Consensus 258 l~~i~~~~~~~~~~q~i~~SAT~~~-~~~~~~~------------------~~~~------------------------- 293 (475)
T PRK01297 258 VRQIIRQTPRKEERQTLLFSATFTD-DVMNLAK------------------QWTT------------------------- 293 (475)
T ss_pred HHHHHHhCCCCCCceEEEEEeecCH-HHHHHHH------------------Hhcc-------------------------
Confidence 344444443 3457999999532 1111111 0000
Q ss_pred HHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCC
Q 004347 410 HAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNH 489 (759)
Q Consensus 410 ~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 489 (759)
.|..+.-... ....+.....+++.
T Consensus 294 ----~~~~v~~~~~---~~~~~~~~~~~~~~------------------------------------------------- 317 (475)
T PRK01297 294 ----DPAIVEIEPE---NVASDTVEQHVYAV------------------------------------------------- 317 (475)
T ss_pred ----CCEEEEeccC---cCCCCcccEEEEEe-------------------------------------------------
Confidence 0000000000 00000001111110
Q ss_pred hhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHH
Q 004347 490 PDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDER 569 (759)
Q Consensus 490 p~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R 569 (759)
..+.|...|..++.. ....++||||+....++.+...|...|+.+..++|+++..+|
T Consensus 318 ---------------------~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R 374 (475)
T PRK01297 318 ---------------------AGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKR 374 (475)
T ss_pred ---------------------cchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHH
Confidence 011233444444432 235689999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 570 KRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 570 ~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
.++++.|++++ +. +|++|+++++|||++++++||+||.|+++..|.|+.||++|.|+... ++.|++.+
T Consensus 375 ~~~~~~Fr~G~--~~-vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 375 IKTLEGFREGK--IR-VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred HHHHHHHhCCC--Cc-EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 99999999744 44 58999999999999999999999999999999999999999997644 44455543
No 39
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=6.4e-26 Score=254.20 Aligned_cols=438 Identities=18% Similarity=0.206 Sum_probs=257.9
Q ss_pred cccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC
Q 004347 184 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP 262 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p 262 (759)
+.....||+||.+-+.-++ |.|.|+|.+||+|||..|+-++....++.+.+++++.+|+. ++.|....+..++-
T Consensus 57 ~p~~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 57 YPTNLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred ccCcccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccC
Confidence 3345689999999998887 89999999999999999999988888887889999999976 56777777877764
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhh-hh-cCccEEEEcCccccc-C-hhhHHHHHHh
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYL-RH-YNWKYLVVDEGHRLK-N-PKCKLLKELK 338 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l-~~-~~~~~lIvDEaH~ik-n-~~s~~~~~l~ 338 (759)
...+....|+...+.... ......+|++.|++.+.+++.+.. .. ..|.++|||||||.. | +.+...+.+.
T Consensus 132 ~~~~T~~l~~~~~~~~r~------~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l 205 (746)
T KOG0354|consen 132 PYSVTGQLGDTVPRSNRG------EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYL 205 (746)
T ss_pred cccceeeccCccCCCchh------hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHH
Confidence 456666666543332211 122467899999999998874422 22 458999999999985 3 4456666666
Q ss_pred cCCC--CcEEEEecCCCCCCHHHHHhhhhhccCCCCC-ChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 004347 339 YIPI--GNKLLLTGTPLQNNLAELWSLLHFILPDIFS-SLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRP 415 (759)
Q Consensus 339 ~l~~--~~rllLTgTPl~n~~~el~sll~fl~p~~~~-~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p 415 (759)
..+. .+.|+|||||- ++.....+.+.=|.-.+-- ....-..-|..-......... -..........+..+++|
T Consensus 206 ~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~---~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 206 DLKNQGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD---LSLCERDIEDPFGMIIEP 281 (746)
T ss_pred HhhhccccEEEEecCCC-ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc---HHHhhhhhhhhHHHHHHH
Confidence 5543 36799999997 6666655555444333100 000001111100000000000 000112334556666777
Q ss_pred HHhhhhhhHHhhhCCCceE-EEEE-e-----------cCCHHHHH-HHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHH
Q 004347 416 FLLRRMKSDVEQMLPRKKE-IILY-A-----------TMTEHQRN-FQDHLINKTLENHLREKVFSAGRGMKGKLNNLMV 481 (759)
Q Consensus 416 ~~lRR~k~dv~~~LP~k~e-~~v~-~-----------~ls~~q~~-~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 481 (759)
++.+-....+ .+... ...| . .....|+. +|-..+.......+.... .. ....+.
T Consensus 282 ~l~~l~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~g------ir--~~~~l~ 349 (746)
T KOG0354|consen 282 LLQQLQEEGL----IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDG------IR--FVDALD 349 (746)
T ss_pred HHHHHHhcCc----cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcc------hh--hHHHHh
Confidence 6654332211 11100 0011 0 00111110 111111110000000000 00 000000
Q ss_pred HHHH------------hc----CChhhhhhhccCCCCCCchHHH----HhhccHHHHHHHHHHHHhh--CCCcEEEEccc
Q 004347 482 QLRK------------NC----NHPDLLESAFSDSCFYPPVEQI----VEQCGKFRLLDRLLARLFA--RNHKVLVFSQW 539 (759)
Q Consensus 482 ~Lrk------------~~----~hp~l~~~~~~~~~~~~~~~~l----~~~s~K~~~L~~lL~~l~~--~~~kvLIFsq~ 539 (759)
.+.. .+ .++.+..... ..+.+ ....+|+..|.++|..... ...|+|||+.+
T Consensus 350 ~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~-------~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~ 422 (746)
T KOG0354|consen 350 YLEDFYEEVALKKYLKLELEARLIRNFTENMN-------ELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVET 422 (746)
T ss_pred hhhhhccccchhHHHHHHhcchhhHHHHHHHH-------hhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEeh
Confidence 0000 00 0000000000 00000 0235799999999987665 45799999999
Q ss_pred hhHHHHHHHHHHh---cCceEEEEeC--------CCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEe
Q 004347 540 TKILDIMEYYFNE---KGYEVCRIDG--------SVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILY 608 (759)
Q Consensus 540 ~~~ld~L~~~L~~---~g~~~~~l~G--------~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~ 608 (759)
+..++.|..+|.. .|++...+-| +|++.+.+++++.|++|.-+ +|++|.+|.+|||+..||.||.|
T Consensus 423 R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcY 499 (746)
T KOG0354|consen 423 RESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICY 499 (746)
T ss_pred HHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEe
Confidence 9999999999883 2555555555 67889999999999985544 59999999999999999999999
Q ss_pred CCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHH-HHHHHHHHHHHHhc
Q 004347 609 DSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILK-RAFSKLKLEHVVIG 664 (759)
Q Consensus 609 D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~-~~~~K~~l~~~vi~ 664 (759)
|..-||...+||+|| +|. +.-.++.|.+ ++ +..-++ .+..|..+....+.
T Consensus 500 d~~snpIrmIQrrGR-gRa---~ns~~vll~t-~~-~~~~~E~~~~~~e~lm~~~i~ 550 (746)
T KOG0354|consen 500 DYSSNPIRMVQRRGR-GRA---RNSKCVLLTT-GS-EVIEFERNNLAKEKLMNQTIS 550 (746)
T ss_pred cCCccHHHHHHHhcc-ccc---cCCeEEEEEc-ch-hHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999 774 4445555555 43 332222 33345555555554
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.95 E-value=2.9e-26 Score=266.01 Aligned_cols=308 Identities=19% Similarity=0.195 Sum_probs=211.3
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCC
Q 004347 185 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPS 263 (759)
Q Consensus 185 ~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~ 263 (759)
+....++|+|.+++..++. +.++++..+||+|||+.....+ +.. .+.+|||+|+. +..+|...+... +
T Consensus 21 fG~~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpa--l~~---~g~tlVisPl~sL~~dqv~~l~~~--g 89 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPA--LVL---DGLTLVVSPLISLMKDQVDQLLAN--G 89 (607)
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHH--HHc---CCCEEEEecHHHHHHHHHHHHHHc--C
Confidence 3445899999999998875 8899999999999998754222 222 35799999965 556788888765 3
Q ss_pred ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHH-HHHhhhhcCccEEEEcCcccccChh-------hHHHH
Q 004347 264 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSD-ARKYLRHYNWKYLVVDEGHRLKNPK-------CKLLK 335 (759)
Q Consensus 264 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~-~~~~l~~~~~~~lIvDEaH~ikn~~-------s~~~~ 335 (759)
..+..+.++......... +.....+..+++++|++.+... +...+...++++|||||||++.... ..+..
T Consensus 90 i~~~~~~s~~~~~~~~~~--~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~ 167 (607)
T PRK11057 90 VAAACLNSTQTREQQLEV--MAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQ 167 (607)
T ss_pred CcEEEEcCCCCHHHHHHH--HHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHH
Confidence 445555554332211110 0011224678999999988643 2244556678999999999986432 22333
Q ss_pred HHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 004347 336 ELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRP 415 (759)
Q Consensus 336 ~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p 415 (759)
....++....++||||+-.....++...+.+-.|..+... |
T Consensus 168 l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------~--------------------------------- 208 (607)
T PRK11057 168 LRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------F--------------------------------- 208 (607)
T ss_pred HHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC------C---------------------------------
Confidence 3344567778999999866655555555544333211000 0
Q ss_pred HHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhh
Q 004347 416 FLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLES 495 (759)
Q Consensus 416 ~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~ 495 (759)
.-|.. .+.+...
T Consensus 209 ------------~r~nl-~~~v~~~------------------------------------------------------- 220 (607)
T PRK11057 209 ------------DRPNI-RYTLVEK------------------------------------------------------- 220 (607)
T ss_pred ------------CCCcc-eeeeeec-------------------------------------------------------
Confidence 00100 0000000
Q ss_pred hccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHH
Q 004347 496 AFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQD 575 (759)
Q Consensus 496 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 575 (759)
..++..+..++.. ..+.++||||+.....+.+...|...|+++..+||+++.++|.++++.
T Consensus 221 -----------------~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~ 281 (607)
T PRK11057 221 -----------------FKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEA 281 (607)
T ss_pred -----------------cchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 0011112222221 257889999999999999999999999999999999999999999999
Q ss_pred hhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceE
Q 004347 576 FNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVH 634 (759)
Q Consensus 576 F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 634 (759)
|..+. ++ +|++|.++|+|||+++++.||+||.|.++..|.|++||++|.|....+.
T Consensus 282 F~~g~--~~-VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 282 FQRDD--LQ-IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred HHCCC--CC-EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 99744 44 5999999999999999999999999999999999999999999765533
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.95 E-value=4.9e-26 Score=264.78 Aligned_cols=307 Identities=18% Similarity=0.202 Sum_probs=217.6
Q ss_pred cccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC
Q 004347 184 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP 262 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p 262 (759)
.+....++|+|.++++.++. |.+++++.+||+|||+.....+ +.. .+.++||+|.. ++.++...+...
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpa--l~~---~g~~lVisPl~sL~~dq~~~l~~~-- 76 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPA--LLL---KGLTVVISPLISLMKDQVDQLRAA-- 76 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHH--HHc---CCcEEEEcCCHHHHHHHHHHHHHc--
Confidence 34456899999999998876 8899999999999998864322 222 35789999955 567788888876
Q ss_pred CceEEEEeCChhHH--HHHHHhcCCCCCCCCCCEEEecHHHHHHH-HHHhhhhcCccEEEEcCcccccChh-------hH
Q 004347 263 SVSAIIYHGSKKER--DEIRRKHMPRAIGPKFPIVVTSYEVALSD-ARKYLRHYNWKYLVVDEGHRLKNPK-------CK 332 (759)
Q Consensus 263 ~~~~~~~~g~~~~r--~~~~~~~~~~~~~~~~~vvIttye~l~~~-~~~~l~~~~~~~lIvDEaH~ikn~~-------s~ 332 (759)
+..+..++++.... ..+... ...+..+++++|++.+... ....+...++.+|||||||++.... ..
T Consensus 77 gi~~~~~~s~~~~~~~~~~~~~----l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~ 152 (591)
T TIGR01389 77 GVAAAYLNSTLSAKEQQDIEKA----LVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQR 152 (591)
T ss_pred CCcEEEEeCCCCHHHHHHHHHH----HhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHH
Confidence 35566666654322 221111 1235688999999988643 2345667788999999999986422 23
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 004347 333 LLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAI 412 (759)
Q Consensus 333 ~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i 412 (759)
+......++....++||||+-.....++...+.+-.|..+.+ -|
T Consensus 153 l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~------------------------------ 196 (591)
T TIGR01389 153 LGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF------------------------------ 196 (591)
T ss_pred HHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC------------------------------
Confidence 344445566667999999997666666655554332221100 00
Q ss_pred hhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhh
Q 004347 413 LRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDL 492 (759)
Q Consensus 413 l~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 492 (759)
..|.....++. -
T Consensus 197 ---------------~r~nl~~~v~~--~--------------------------------------------------- 208 (591)
T TIGR01389 197 ---------------DRPNLRFSVVK--K--------------------------------------------------- 208 (591)
T ss_pred ---------------CCCCcEEEEEe--C---------------------------------------------------
Confidence 00110000000 0
Q ss_pred hhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHH
Q 004347 493 LESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQ 572 (759)
Q Consensus 493 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 572 (759)
..+...+.+++... .+.+.||||......+.+..+|...|+++..+||+++.++|..+
T Consensus 209 --------------------~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i 266 (591)
T TIGR01389 209 --------------------NNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAEN 266 (591)
T ss_pred --------------------CCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHH
Confidence 01222233333322 36789999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceE
Q 004347 573 IQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVH 634 (759)
Q Consensus 573 i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 634 (759)
++.|..+. +. +|++|.++|.|||+++++.||+||+|+|+..|.|++||++|.|+...+.
T Consensus 267 ~~~F~~g~--~~-vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 267 QEDFLYDD--VK-VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred HHHHHcCC--Cc-EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 99999744 33 5999999999999999999999999999999999999999999766643
No 42
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.95 E-value=7.8e-26 Score=264.40 Aligned_cols=313 Identities=17% Similarity=0.134 Sum_probs=209.5
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhCCC
Q 004347 185 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVPS 263 (759)
Q Consensus 185 ~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~ 263 (759)
+....+||+|.++|..++. |.++|+..+||.|||+....-+ +.. .+.+|||+|+.-| .++...+... +
T Consensus 456 FG~~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPA--L~~---~GiTLVISPLiSLmqDQV~~L~~~--G 524 (1195)
T PLN03137 456 FGNHSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPA--LIC---PGITLVISPLVSLIQDQIMNLLQA--N 524 (1195)
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHH--HHc---CCcEEEEeCHHHHHHHHHHHHHhC--C
Confidence 3456899999999998876 8999999999999998743222 111 3679999996644 4455555543 4
Q ss_pred ceEEEEeCChhH--HHHHHHhcCCCCCCCCCCEEEecHHHHHHH--HHHhhh----hcCccEEEEcCcccccChhh----
Q 004347 264 VSAIIYHGSKKE--RDEIRRKHMPRAIGPKFPIVVTSYEVALSD--ARKYLR----HYNWKYLVVDEGHRLKNPKC---- 331 (759)
Q Consensus 264 ~~~~~~~g~~~~--r~~~~~~~~~~~~~~~~~vvIttye~l~~~--~~~~l~----~~~~~~lIvDEaH~ikn~~s---- 331 (759)
+.+..+.++... ...+.+.. ....+.++|+++|++.+... +...+. ...+.+|||||||++.....
T Consensus 525 I~Aa~L~s~~s~~eq~~ilr~l--~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRp 602 (1195)
T PLN03137 525 IPAASLSAGMEWAEQLEILQEL--SSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRP 602 (1195)
T ss_pred CeEEEEECCCCHHHHHHHHHHH--HhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHH
Confidence 555555554322 21111111 11125689999999987532 112222 22368999999999865321
Q ss_pred ---HHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHH
Q 004347 332 ---KLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAK 408 (759)
Q Consensus 332 ---~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (759)
.+......++....++||||.-.....++...|.+..+.++. .-|.
T Consensus 603 dYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr------~Sf~------------------------- 651 (1195)
T PLN03137 603 DYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR------QSFN------------------------- 651 (1195)
T ss_pred HHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee------cccC-------------------------
Confidence 122233456677889999998777666666655543332211 0000
Q ss_pred HHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcC
Q 004347 409 LHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCN 488 (759)
Q Consensus 409 L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~ 488 (759)
-|.. .+.+ ++-. ...
T Consensus 652 --------------------RpNL-~y~V-v~k~---kk~---------------------------------------- 666 (1195)
T PLN03137 652 --------------------RPNL-WYSV-VPKT---KKC---------------------------------------- 666 (1195)
T ss_pred --------------------ccce-EEEE-eccc---hhH----------------------------------------
Confidence 1111 1111 0000 000
Q ss_pred ChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHH
Q 004347 489 HPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDE 568 (759)
Q Consensus 489 hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~ 568 (759)
+..+.+++... ..+...||||..+...+.+...|...|+.+..+||+++..+
T Consensus 667 ---------------------------le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~ee 718 (1195)
T PLN03137 667 ---------------------------LEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQ 718 (1195)
T ss_pred ---------------------------HHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHH
Confidence 00111111111 12457899999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEE
Q 004347 569 RKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR 637 (759)
Q Consensus 569 R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyr 637 (759)
|..++++|..+ .++ +|++|.++|+|||+++++.||+||.|.++..|.|++||++|.|+...+..|+
T Consensus 719 R~~vqe~F~~G--ei~-VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 719 RAFVQKQWSKD--EIN-IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHHHHHHHhcC--CCc-EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 99999999974 444 5999999999999999999999999999999999999999999887755543
No 43
>PTZ00424 helicase 45; Provisional
Probab=99.95 E-value=9.7e-26 Score=251.26 Aligned_cols=320 Identities=20% Similarity=0.260 Sum_probs=209.9
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHH-HHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhCC--
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAF-LAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVP-- 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~l-i~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p-- 262 (759)
...++|+|..++..++. +.+.|+..+||+|||+.++.. +..+........+|||+|...+ .|+.+.+..+..
T Consensus 48 ~~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 123 (401)
T PTZ00424 48 FEKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYL 123 (401)
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhc
Confidence 34799999999999875 889999999999999986544 4433322234579999997754 566666666643
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccC--hhhHHHHHHhc
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKCKLLKELKY 339 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn--~~s~~~~~l~~ 339 (759)
...+....|....+...... ....+|+|+|++.+...+.. .+...++++|||||+|++.. ....+...+..
T Consensus 124 ~~~~~~~~g~~~~~~~~~~~------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~ 197 (401)
T PTZ00424 124 KVRCHACVGGTVVRDDINKL------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKK 197 (401)
T ss_pred CceEEEEECCcCHHHHHHHH------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhh
Confidence 23444445544333332221 13468999999988765432 23344678999999999864 33445556666
Q ss_pred CCC-CcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHh
Q 004347 340 IPI-GNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 418 (759)
Q Consensus 340 l~~-~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~l 418 (759)
+.. ...+++|||+-. ...++ ...|.. .|..+
T Consensus 198 ~~~~~~~i~~SAT~~~-~~~~~------------------~~~~~~-----------------------------~~~~~ 229 (401)
T PTZ00424 198 LPPDVQVALFSATMPN-EILEL------------------TTKFMR-----------------------------DPKRI 229 (401)
T ss_pred CCCCcEEEEEEecCCH-HHHHH------------------HHHHcC-----------------------------CCEEE
Confidence 643 457999999632 11111 110000 00000
Q ss_pred hhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhcc
Q 004347 419 RRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFS 498 (759)
Q Consensus 419 RR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 498 (759)
. .+.+ ...+.......+.+ ....
T Consensus 230 ~-~~~~-~~~~~~~~~~~~~~--~~~~----------------------------------------------------- 252 (401)
T PTZ00424 230 L-VKKD-ELTLEGIRQFYVAV--EKEE----------------------------------------------------- 252 (401)
T ss_pred E-eCCC-CcccCCceEEEEec--ChHH-----------------------------------------------------
Confidence 0 0000 00011111111111 1000
Q ss_pred CCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhc
Q 004347 499 DSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFND 578 (759)
Q Consensus 499 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 578 (759)
.+...+..++.. ....++||||+....++.+...|...|+.+..+||+++..+|..+++.|++
T Consensus 253 ---------------~~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~ 315 (401)
T PTZ00424 253 ---------------WKFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS 315 (401)
T ss_pred ---------------HHHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 011122222222 134689999999999999999999999999999999999999999999997
Q ss_pred cCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 579 VNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 579 ~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
+. ++ +|++|+++++|||++.+++||+||+|.++..|.|++||++|.|.. -.++.|++...
T Consensus 316 g~--~~-vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~ 375 (401)
T PTZ00424 316 GS--TR-VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPDD 375 (401)
T ss_pred CC--CC-EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHHH
Confidence 44 44 599999999999999999999999999999999999999999854 45566776643
No 44
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.6e-25 Score=253.98 Aligned_cols=334 Identities=22% Similarity=0.299 Sum_probs=229.8
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHh-CCCCCC-eEEEECCccHH-HHHHHHHHhC
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKG-NGLHGP-YLVIAPLSTLS-NWVNEISRFV 261 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~-~~~~~~-~LIV~P~sll~-~W~~E~~~~~ 261 (759)
....+.|.|..++..++. |.+.|..+.+|+|||+. .|.++..+.. .....+ .||++|+..|. |-.+++.++.
T Consensus 48 gf~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~ 123 (513)
T COG0513 48 GFEEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLG 123 (513)
T ss_pred CCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHH
Confidence 345788999999999986 89999999999999988 6777777663 222223 99999999775 4555566654
Q ss_pred C---CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh--hhHHHH
Q 004347 262 P---SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP--KCKLLK 335 (759)
Q Consensus 262 p---~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~--~s~~~~ 335 (759)
. .+.+..+.|............ ...+|||.|+..+...+.. .|...+..++|+|||+++.+. ...+..
T Consensus 124 ~~~~~~~~~~i~GG~~~~~q~~~l~------~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~ 197 (513)
T COG0513 124 KNLGGLRVAVVYGGVSIRKQIEALK------RGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEK 197 (513)
T ss_pred hhcCCccEEEEECCCCHHHHHHHHh------cCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHH
Confidence 3 455555555443333322221 2489999999999977643 366667889999999999764 345666
Q ss_pred HHhcCCC-CcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 004347 336 ELKYIPI-GNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILR 414 (759)
Q Consensus 336 ~l~~l~~-~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~ 414 (759)
.+..++. ...++.|||--. ...++ . ..|.. .
T Consensus 198 I~~~~p~~~qtllfSAT~~~-~i~~l---~---------------~~~l~-----------------------------~ 229 (513)
T COG0513 198 ILKALPPDRQTLLFSATMPD-DIREL---A---------------RRYLN-----------------------------D 229 (513)
T ss_pred HHHhCCcccEEEEEecCCCH-HHHHH---H---------------HHHcc-----------------------------C
Confidence 6666665 456888999522 11111 1 00000 1
Q ss_pred hHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhh
Q 004347 415 PFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLE 494 (759)
Q Consensus 415 p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~ 494 (759)
|..+..-........+......+.|.-.
T Consensus 230 p~~i~v~~~~~~~~~~~i~q~~~~v~~~---------------------------------------------------- 257 (513)
T COG0513 230 PVEIEVSVEKLERTLKKIKQFYLEVESE---------------------------------------------------- 257 (513)
T ss_pred CcEEEEccccccccccCceEEEEEeCCH----------------------------------------------------
Confidence 1111000000000111112222222110
Q ss_pred hhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHH
Q 004347 495 SAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQ 574 (759)
Q Consensus 495 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 574 (759)
..|+..|..++... ...++||||.....++.|...|...|++++.|||++++.+|.+.++
T Consensus 258 ------------------~~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~ 317 (513)
T COG0513 258 ------------------EEKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALE 317 (513)
T ss_pred ------------------HHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHH
Confidence 02666666666653 2337999999999999999999999999999999999999999999
Q ss_pred HhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHH
Q 004347 575 DFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFS 654 (759)
Q Consensus 575 ~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~ 654 (759)
.|+++... +|++|+++++|||++..++||+||.|.++..|.||+||++|.| +.-..+.|++. .-|...+.+...
T Consensus 318 ~F~~g~~~---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG--~~G~ai~fv~~-~~e~~~l~~ie~ 391 (513)
T COG0513 318 KFKDGELR---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG--RKGVAISFVTE-EEEVKKLKRIEK 391 (513)
T ss_pred HHHcCCCC---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCC--CCCeEEEEeCc-HHHHHHHHHHHH
Confidence 99974444 5999999999999999999999999999999999999999999 33466667776 235555655555
Q ss_pred H
Q 004347 655 K 655 (759)
Q Consensus 655 K 655 (759)
.
T Consensus 392 ~ 392 (513)
T COG0513 392 R 392 (513)
T ss_pred H
Confidence 4
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.94 E-value=3.2e-25 Score=266.17 Aligned_cols=324 Identities=19% Similarity=0.209 Sum_probs=203.2
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhCC------CCCCeEEEECCccH-HHHHHH---
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNG------LHGPYLVIAPLSTL-SNWVNE--- 256 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~~------~~~~~LIV~P~sll-~~W~~E--- 256 (759)
..|+|+|..++..++. |.++|++.+||+|||+.++ +++..+.... ....+|+|+|+..+ .++.+.
T Consensus 31 ~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 4699999999988754 8899999999999999864 4555555321 12358999997755 444442
Q ss_pred ----HHHhC-------CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-----HhhhhcCccEEEE
Q 004347 257 ----ISRFV-------PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-----KYLRHYNWKYLVV 320 (759)
Q Consensus 257 ----~~~~~-------p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~-----~~l~~~~~~~lIv 320 (759)
+..++ |.+.+.+.+|........+.. ...++|+|||++.+...+. ..|. +.++|||
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l------~~~p~IlVtTPE~L~~ll~~~~~~~~l~--~l~~VVI 178 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML------KKPPHILITTPESLAILLNSPKFREKLR--TVKWVIV 178 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH------hCCCCEEEecHHHHHHHhcChhHHHHHh--cCCEEEE
Confidence 33332 467888889876544332111 1367899999998754321 1222 4689999
Q ss_pred cCcccccChh--hHHH---HHHhcC--CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhh
Q 004347 321 DEGHRLKNPK--CKLL---KELKYI--PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVM 393 (759)
Q Consensus 321 DEaH~ikn~~--s~~~---~~l~~l--~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~ 393 (759)
||+|.+.+.. ..+. ..+..+ ....+|+||||.- ++.++... +...... ..+
T Consensus 179 DE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~--~~~~va~~---L~~~~~~---------~~~-------- 236 (876)
T PRK13767 179 DEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE--PLEEVAKF---LVGYEDD---------GEP-------- 236 (876)
T ss_pred echhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC--CHHHHHHH---hcCcccc---------CCC--------
Confidence 9999997432 2222 222232 2456799999962 33333221 1110000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcch
Q 004347 394 KEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMK 473 (759)
Q Consensus 394 ~~~~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~ 473 (759)
++..+ +...........+.++.... +.
T Consensus 237 --------------------r~~~i------v~~~~~k~~~i~v~~p~~~l----~~----------------------- 263 (876)
T PRK13767 237 --------------------RDCEI------VDARFVKPFDIKVISPVDDL----IH----------------------- 263 (876)
T ss_pred --------------------CceEE------EccCCCccceEEEeccCccc----cc-----------------------
Confidence 00000 00000000011111111000 00
Q ss_pred hHHHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc
Q 004347 474 GKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK 553 (759)
Q Consensus 474 ~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~ 553 (759)
... ......+...|..+...++++||||+.+...+.+...|...
T Consensus 264 ------------------------------~~~------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 264 ------------------------------TPA------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred ------------------------------ccc------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 000 00011122333344446789999999999999888888763
Q ss_pred ------CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhc
Q 004347 554 ------GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRI 627 (759)
Q Consensus 554 ------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 627 (759)
+..+..+||+++.++|..+.+.|+++ .++ +|+||.++++|||++.+++||+|++|.++..+.||+||++|.
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G--~i~-vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG--ELK-VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcC--CCe-EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 46789999999999999999999974 444 599999999999999999999999999999999999999976
Q ss_pred -CCCCceEEEE
Q 004347 628 -GQTKPVHVYR 637 (759)
Q Consensus 628 -GQ~k~V~Vyr 637 (759)
|....-.++-
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4555555554
No 46
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=3.7e-27 Score=249.74 Aligned_cols=365 Identities=17% Similarity=0.201 Sum_probs=221.4
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhC-------------CCCCCeEEEECCccH-
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGN-------------GLHGPYLVIAPLSTL- 250 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~-------------~~~~~~LIV~P~sll- 250 (759)
....+.|.|...+..++. .....|-|.+||+|||+. +|.++..+.+. ++..-.|||+|+..|
T Consensus 200 gFs~Pt~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa 276 (731)
T KOG0347|consen 200 GFSRPTEIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELA 276 (731)
T ss_pred CCCCCccchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHH
Confidence 345777888888877764 236788999999999998 78887744432 122237999998866
Q ss_pred HHHHHHHHHhC--CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH---Hhhhhc-CccEEEEcCcc
Q 004347 251 SNWVNEISRFV--PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR---KYLRHY-NWKYLVVDEGH 324 (759)
Q Consensus 251 ~~W~~E~~~~~--p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~---~~l~~~-~~~~lIvDEaH 324 (759)
.|-.+.|...+ +.+.+..+.|.-.....-|- +...++|||+|++.+..-+. .++.++ ...|+|||||+
T Consensus 277 ~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRl------L~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD 350 (731)
T KOG0347|consen 277 HQVKQHLKAIAEKTQIRVASITGGLAVQKQQRL------LNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD 350 (731)
T ss_pred HHHHHHHHHhccccCeEEEEeechhHHHHHHHH------HhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH
Confidence 44455555443 46666666665433222111 12377999999998876542 123332 46799999999
Q ss_pred cccC--hhhHHHHHHhcCC------CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHH
Q 004347 325 RLKN--PKCKLLKELKYIP------IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEE 396 (759)
Q Consensus 325 ~ikn--~~s~~~~~l~~l~------~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~ 396 (759)
|+-. ....+.+.|..+. -+..+..|||- ..............
T Consensus 351 RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATl------------------------------t~~~~~~~~~~~k~ 400 (731)
T KOG0347|consen 351 RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATL------------------------------TLVLQQPLSSSRKK 400 (731)
T ss_pred HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEe------------------------------ehhhcChhHHhhhc
Confidence 9963 3333444444332 11225555552 11000000000000
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHH
Q 004347 397 LEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKL 476 (759)
Q Consensus 397 ~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l 476 (759)
. .+....-..+..+++..-+| -+|+ .+++|+.+.-. .
T Consensus 401 ~--~k~~~~~~kiq~Lmk~ig~~---------~kpk-----iiD~t~q~~ta-~-------------------------- 437 (731)
T KOG0347|consen 401 K--DKEDELNAKIQHLMKKIGFR---------GKPK-----IIDLTPQSATA-S-------------------------- 437 (731)
T ss_pred c--chhhhhhHHHHHHHHHhCcc---------CCCe-----eEecCcchhHH-H--------------------------
Confidence 0 00011122222333222211 2222 23344433211 0
Q ss_pred HHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCce
Q 004347 477 NNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYE 556 (759)
Q Consensus 477 ~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~ 556 (759)
.+..-+-.|. | +-.. -.|--+|. .-..+.||||++++.+..|.-+|...+++
T Consensus 438 --~l~Es~I~C~-~-~eKD---------------------~ylyYfl~---ryPGrTlVF~NsId~vKRLt~~L~~L~i~ 489 (731)
T KOG0347|consen 438 --TLTESLIECP-P-LEKD---------------------LYLYYFLT---RYPGRTLVFCNSIDCVKRLTVLLNNLDIP 489 (731)
T ss_pred --HHHHHhhcCC-c-cccc---------------------eeEEEEEe---ecCCceEEEechHHHHHHHHHHHhhcCCC
Confidence 1111122231 1 0000 00000000 12468999999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 557 VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 557 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
...+|.+|.+.+|.+.+++|.+..+ .+||+|+++++|||++++.|||||..|.+...|++|.||+.|.+.. -|.|.
T Consensus 490 p~~LHA~M~QKqRLknLEkF~~~~~---~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsvm 565 (731)
T KOG0347|consen 490 PLPLHASMIQKQRLKNLEKFKQSPS---GVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSVM 565 (731)
T ss_pred CchhhHHHHHHHHHHhHHHHhcCCC---eEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC-CeEEE
Confidence 9999999999999999999997333 3799999999999999999999999999999999999999998743 23322
Q ss_pred EEe---------------eC-----CCHHHHHHHHHHHHHHHHHHHhc
Q 004347 637 RLA---------------TA-----QSVEGRILKRAFSKLKLEHVVIG 664 (759)
Q Consensus 637 rli---------------~~-----~TvEe~i~~~~~~K~~l~~~vi~ 664 (759)
..- .. -.|++.|+..+..+..|++.+..
T Consensus 566 l~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~ 613 (731)
T KOG0347|consen 566 LCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDK 613 (731)
T ss_pred EeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHH
Confidence 110 00 13678888888888888887764
No 47
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1e-24 Score=229.47 Aligned_cols=332 Identities=18% Similarity=0.278 Sum_probs=225.4
Q ss_pred ccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCC---CCCCeEEEECCccH----HHHH
Q 004347 183 SLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNG---LHGPYLVIAPLSTL----SNWV 254 (759)
Q Consensus 183 ~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~---~~~~~LIV~P~sll----~~W~ 254 (759)
..+....+.|.|...++-.+- |+..+-|..||+|||.. ++.++..|+.+. ...++||+||+.-| .+..
T Consensus 197 ~~lGy~~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~ 272 (691)
T KOG0338|consen 197 STLGYKKPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVT 272 (691)
T ss_pred HhcCCCCCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHH
Confidence 344456889999999987665 88888889999999988 677777777653 33579999998866 4566
Q ss_pred HHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccChh-h
Q 004347 255 NEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKNPK-C 331 (759)
Q Consensus 255 ~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn~~-s 331 (759)
+.+.+|+. +.+.+..|.-.-+..-. .+...++|||.|++.+..++++ .|..-...++|+|||+|+.... .
T Consensus 273 ~qlaqFt~-I~~~L~vGGL~lk~QE~------~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFa 345 (691)
T KOG0338|consen 273 KQLAQFTD-ITVGLAVGGLDLKAQEA------VLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFA 345 (691)
T ss_pred HHHHhhcc-ceeeeeecCccHHHHHH------HHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHH
Confidence 67788874 66666666554433211 1225789999999999988754 2444456799999999997432 3
Q ss_pred HHHHHHhcCCCCcE--EEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 004347 332 KLLKELKYIPIGNK--LLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKL 409 (759)
Q Consensus 332 ~~~~~l~~l~~~~r--llLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L 409 (759)
.....+..+++.+| +|.|||- .....+|.+|
T Consensus 346 demnEii~lcpk~RQTmLFSATM-teeVkdL~sl---------------------------------------------- 378 (691)
T KOG0338|consen 346 DEMNEIIRLCPKNRQTMLFSATM-TEEVKDLASL---------------------------------------------- 378 (691)
T ss_pred HHHHHHHHhccccccceeehhhh-HHHHHHHHHh----------------------------------------------
Confidence 34445555555544 7888874 1111222111
Q ss_pred HHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCC
Q 004347 410 HAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNH 489 (759)
Q Consensus 410 ~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 489 (759)
.|.. ...|++..+..-. ..+..-..++|--
T Consensus 379 ------------------SL~k--Pvrifvd~~~~~a---------------------------~~LtQEFiRIR~~--- 408 (691)
T KOG0338|consen 379 ------------------SLNK--PVRIFVDPNKDTA---------------------------PKLTQEFIRIRPK--- 408 (691)
T ss_pred ------------------hcCC--CeEEEeCCccccc---------------------------hhhhHHHheeccc---
Confidence 0111 1112221110000 0000000000000
Q ss_pred hhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHH
Q 004347 490 PDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDER 569 (759)
Q Consensus 490 p~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R 569 (759)
...-+-.+|..++.+.+ .++++||.+....+..+.-.|...|+++.-+||+.++.+|
T Consensus 409 ---------------------re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QR 465 (691)
T KOG0338|consen 409 ---------------------REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQR 465 (691)
T ss_pred ---------------------cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHH
Confidence 00113344555666554 5789999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHH
Q 004347 570 KRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRIL 649 (759)
Q Consensus 570 ~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~ 649 (759)
.+.+..|.+. .+. +||+|+++++|||+.++.+||+|+.|-+...|+||+||+.|.|.. -+-..|++.+ |.+|+
T Consensus 466 lesL~kFk~~--eid-vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRa--GrsVtlvgE~--dRkll 538 (691)
T KOG0338|consen 466 LESLEKFKKE--EID-VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRA--GRSVTLVGES--DRKLL 538 (691)
T ss_pred HHHHHHHHhc--cCC-EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccC--cceEEEeccc--cHHHH
Confidence 9999999974 444 599999999999999999999999999999999999999999954 3334577776 66665
Q ss_pred HHH
Q 004347 650 KRA 652 (759)
Q Consensus 650 ~~~ 652 (759)
.-.
T Consensus 539 K~i 541 (691)
T KOG0338|consen 539 KEI 541 (691)
T ss_pred HHH
Confidence 433
No 48
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.94 E-value=1.8e-24 Score=254.66 Aligned_cols=331 Identities=17% Similarity=0.227 Sum_probs=215.3
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhC-CCc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFV-PSV 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~-p~~ 264 (759)
..|+|||.+++..++. |.+.|++..||+|||+.. +.++..+.. ......|||+|+..| .|...++.++. ..+
T Consensus 35 ~~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i 109 (742)
T TIGR03817 35 HRPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRELTLRGV 109 (742)
T ss_pred CcCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCe
Confidence 4799999999998875 899999999999999985 455555554 344579999997766 56667777775 356
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH-------HHhhhhcCccEEEEcCcccccCh-hhHHHHH
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA-------RKYLRHYNWKYLVVDEGHRLKNP-KCKLLKE 336 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~-------~~~l~~~~~~~lIvDEaH~ikn~-~s~~~~~ 336 (759)
.+.+++|......... .....+|+|+|++++.... ..+|. +.++|||||||.+... .+.+...
T Consensus 110 ~v~~~~Gdt~~~~r~~-------i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vViDEah~~~g~fg~~~~~i 180 (742)
T TIGR03817 110 RPATYDGDTPTEERRW-------AREHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVVIDECHSYRGVFGSHVALV 180 (742)
T ss_pred EEEEEeCCCCHHHHHH-------HhcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEEEeChhhccCccHHHHHHH
Confidence 7888988765433211 1134689999999886432 11233 4589999999998652 2332222
Q ss_pred HhcC--------CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHH
Q 004347 337 LKYI--------PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAK 408 (759)
Q Consensus 337 l~~l--------~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (759)
+.++ .....+++|||.- +..++... + +..
T Consensus 181 l~rL~ri~~~~g~~~q~i~~SATi~--n~~~~~~~---l--------------~g~------------------------ 217 (742)
T TIGR03817 181 LRRLRRLCARYGASPVFVLASATTA--DPAAAASR---L--------------IGA------------------------ 217 (742)
T ss_pred HHHHHHHHHhcCCCCEEEEEecCCC--CHHHHHHH---H--------------cCC------------------------
Confidence 2222 2345799999952 23332111 0 000
Q ss_pred HHHHhhhHHhhhhhhHHh-hhCCCc-eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHh
Q 004347 409 LHAILRPFLLRRMKSDVE-QMLPRK-KEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKN 486 (759)
Q Consensus 409 L~~il~p~~lRR~k~dv~-~~LP~k-~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~ 486 (759)
|+. .+. ...|.. ....++.+.- .. ... ..+.. .|
T Consensus 218 ------~~~------~i~~~~~~~~~~~~~~~~p~~-~~------~~~------------~~~~~-----------~r-- 253 (742)
T TIGR03817 218 ------PVV------AVTEDGSPRGARTVALWEPPL-TE------LTG------------ENGAP-----------VR-- 253 (742)
T ss_pred ------CeE------EECCCCCCcCceEEEEecCCc-cc------ccc------------ccccc-----------cc--
Confidence 000 000 011111 1111111100 00 000 00000 00
Q ss_pred cCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc--------CceEE
Q 004347 487 CNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK--------GYEVC 558 (759)
Q Consensus 487 ~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~--------g~~~~ 558 (759)
. .....+...+..++ ..+.++||||+.+...+.+..+|... +.++.
T Consensus 254 ----------------~------~~~~~~~~~l~~l~----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~ 307 (742)
T TIGR03817 254 ----------------R------SASAEAADLLADLV----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVA 307 (742)
T ss_pred ----------------c------chHHHHHHHHHHHH----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchh
Confidence 0 00011333333333 35789999999999999998887653 56788
Q ss_pred EEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEE
Q 004347 559 RIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRL 638 (759)
Q Consensus 559 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrl 638 (759)
.+||++++++|.++.++|.++ .++ +|++|+++++|||+...++||+||.|-+...|.||+||++|.|+..- ++.+
T Consensus 308 ~~hgg~~~~eR~~ie~~f~~G--~i~-vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v 382 (742)
T TIGR03817 308 AYRAGYLPEDRRELERALRDG--ELL-GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLV 382 (742)
T ss_pred heecCCCHHHHHHHHHHHHcC--Cce-EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEE
Confidence 999999999999999999974 444 59999999999999999999999999999999999999999997643 4456
Q ss_pred eeCCCHHHHHHH
Q 004347 639 ATAQSVEGRILK 650 (759)
Q Consensus 639 i~~~TvEe~i~~ 650 (759)
+..+..|..++.
T Consensus 383 ~~~~~~d~~~~~ 394 (742)
T TIGR03817 383 ARDDPLDTYLVH 394 (742)
T ss_pred eCCChHHHHHHh
Confidence 666678877554
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.93 E-value=7.2e-24 Score=247.13 Aligned_cols=304 Identities=16% Similarity=0.232 Sum_probs=200.0
Q ss_pred CccchhHHHHHHHHHHHhhcC--CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhCC--
Q 004347 188 GKLKSYQLKGVKWLISLWQNG--LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVP-- 262 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~--~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p-- 262 (759)
.+|+++|.+++..++.-.... .+.+|..+||+|||+.++..+......| ..++|++|+..| .||.+.+.++++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g--~qvlilaPT~~LA~Q~~~~~~~l~~~~ 311 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG--YQVALMAPTEILAEQHYNSLRNLLAPL 311 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEECCHHHHHHHHHHHHHHHhccc
Confidence 379999999999998754332 4679999999999998765554444443 579999997755 789999999986
Q ss_pred CceEEEEeCChhHHH--HHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC
Q 004347 263 SVSAIIYHGSKKERD--EIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI 340 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~--~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l 340 (759)
++++.+++|+..... .... ....+..+|+|+|+..+... +...+..+|||||+|++.-.. ........
T Consensus 312 gi~v~lltg~~~~~~r~~~~~----~i~~g~~~IiVgT~~ll~~~----~~~~~l~lvVIDEaH~fg~~q--r~~l~~~~ 381 (630)
T TIGR00643 312 GIEVALLTGSLKGKRRKELLE----TIASGQIHLVVGTHALIQEK----VEFKRLALVIIDEQHRFGVEQ--RKKLREKG 381 (630)
T ss_pred CcEEEEEecCCCHHHHHHHHH----HHhCCCCCEEEecHHHHhcc----ccccccceEEEechhhccHHH--HHHHHHhc
Confidence 478888888754332 1111 11234679999999977543 222356899999999974221 11122222
Q ss_pred C---CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 341 P---IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 341 ~---~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
. ..+.+++||||++..+.-. +...+..
T Consensus 382 ~~~~~~~~l~~SATp~prtl~l~--~~~~l~~------------------------------------------------ 411 (630)
T TIGR00643 382 QGGFTPHVLVMSATPIPRTLALT--VYGDLDT------------------------------------------------ 411 (630)
T ss_pred ccCCCCCEEEEeCCCCcHHHHHH--hcCCcce------------------------------------------------
Confidence 2 5778999999976432210 0000000
Q ss_pred hhhhhhHHhhhCCCceE--EEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhh
Q 004347 418 LRRMKSDVEQMLPRKKE--IILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLES 495 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e--~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~ 495 (759)
.+...+|+... ....+.-. ...
T Consensus 412 ------~~i~~~p~~r~~i~~~~~~~~-~~~------------------------------------------------- 435 (630)
T TIGR00643 412 ------SIIDELPPGRKPITTVLIKHD-EKD------------------------------------------------- 435 (630)
T ss_pred ------eeeccCCCCCCceEEEEeCcc-hHH-------------------------------------------------
Confidence 00012332111 11111111 000
Q ss_pred hccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchh--------HHHHHHHHHHh--cCceEEEEeCCCC
Q 004347 496 AFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTK--------ILDIMEYYFNE--KGYEVCRIDGSVR 565 (759)
Q Consensus 496 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~--------~ld~L~~~L~~--~g~~~~~l~G~~~ 565 (759)
.+...+.+....+++++|||.... .+..+...|.. .++.+..+||+++
T Consensus 436 ----------------------~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~ 493 (630)
T TIGR00643 436 ----------------------IVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMK 493 (630)
T ss_pred ----------------------HHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence 111122222345788999987652 23344444443 4788999999999
Q ss_pred HHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCC-CcchhhHHhhhhhhcCCCCceE
Q 004347 566 LDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDW-NPQMDLQAMDRCHRIGQTKPVH 634 (759)
Q Consensus 566 ~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~ 634 (759)
..+|.+++++|.++... +|+||.+.++|||++++++||+||.+. +...+.|+.||++|-|....|.
T Consensus 494 ~~eR~~i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 494 SDEKEAVMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHHHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 99999999999985444 599999999999999999999999985 6678899999999998655444
No 50
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=4.8e-25 Score=231.03 Aligned_cols=342 Identities=22% Similarity=0.340 Sum_probs=240.6
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-HHHHHHHHHHhCC--C
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRFVP--S 263 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p--~ 263 (759)
..++||||.+.++-|... .+.+.||+.-++|.|||+..+..++.+ .+..||+|..++ +.||..+|..|.. .
T Consensus 300 st~iRpYQEksL~KMFGN-gRARSGiIVLPCGAGKtLVGvTAa~ti-----kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKTLVGVTAACTI-----KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred ccccCchHHHHHHHHhCC-CcccCceEEEecCCCCceeeeeeeeee-----cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 458999999999988742 123468999999999999988776654 357999999775 7999999999974 2
Q ss_pred ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHH---------HHHhhhhcCccEEEEcCcccccChhhHHH
Q 004347 264 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSD---------ARKYLRHYNWKYLVVDEGHRLKNPKCKLL 334 (759)
Q Consensus 264 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~---------~~~~l~~~~~~~lIvDEaH~ikn~~s~~~ 334 (759)
-.++.++....++. .....|+|+||.++..- .-.++....|.++|+||.|-+ +.....
T Consensus 374 ~~i~rFTsd~Ke~~-----------~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~MFR 440 (776)
T KOG1123|consen 374 DQICRFTSDAKERF-----------PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKMFR 440 (776)
T ss_pred cceEEeeccccccC-----------CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHHHH
Confidence 34566665554332 24678999999987531 125788889999999999987 445555
Q ss_pred HHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhc-cCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 004347 335 KELKYIPIGNKLLLTGTPLQNNLAELWSLLHFI-LPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAIL 413 (759)
Q Consensus 335 ~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl-~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il 413 (759)
+.+....+..+|+||||-+..+ +=..=|||| .|.++. .+|.+..
T Consensus 441 RVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE-----AnWmdL~---------------------------- 485 (776)
T KOG1123|consen 441 RVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE-----ANWMDLQ---------------------------- 485 (776)
T ss_pred HHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh-----ccHHHHH----------------------------
Confidence 6666678888999999987542 112223443 343321 1221110
Q ss_pred hhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhh
Q 004347 414 RPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLL 493 (759)
Q Consensus 414 ~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~ 493 (759)
-...+.......|+|+||+. +|...+....... .++.
T Consensus 486 -----------~kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~kr--------------~lLy--------------- 522 (776)
T KOG1123|consen 486 -----------KKGHIAKVQCAEVWCPMTPE---FYREYLRENTRKR--------------MLLY--------------- 522 (776)
T ss_pred -----------hCCceeEEeeeeeecCCCHH---HHHHHHhhhhhhh--------------heee---------------
Confidence 00224444567799999986 4444433221100 0000
Q ss_pred hhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHH
Q 004347 494 ESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQI 573 (759)
Q Consensus 494 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i 573 (759)
+-+..|+++..-+++.+..+|+|+|||+...-. |..|-...|-++ |.|.+++.+|.+++
T Consensus 523 ----------------vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfA---Lk~YAikl~Kpf--IYG~Tsq~ERm~IL 581 (776)
T KOG1123|consen 523 ----------------VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFA---LKEYAIKLGKPF--IYGPTSQNERMKIL 581 (776)
T ss_pred ----------------ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHH---HHHHHHHcCCce--EECCCchhHHHHHH
Confidence 011348888888888888899999999976543 444544555554 78999999999999
Q ss_pred HHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCC-cchhhHHhhhhhhcCCC----CceEEEEEeeCCCHHHHH
Q 004347 574 QDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWN-PQMDLQAMDRCHRIGQT----KPVHVYRLATAQSVEGRI 648 (759)
Q Consensus 574 ~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wn-p~~~~Qa~gR~~RiGQ~----k~V~Vyrli~~~TvEe~i 648 (759)
+.|+. ++.+..+.+ +++|...|||+.|+.+|...+..- -....||.||+.|.-.. -+++.|.|+..+|.|..-
T Consensus 582 qnFq~-n~~vNTIFl-SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 582 QNFQT-NPKVNTIFL-SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred Hhccc-CCccceEEE-eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 99997 677776555 589999999999999999888764 45678999999997532 238999999999988654
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.92 E-value=4.4e-24 Score=253.73 Aligned_cols=309 Identities=17% Similarity=0.202 Sum_probs=205.2
Q ss_pred CCccchhHHHHHHHHHHHhhcC--CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhCCC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNG--LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVPS 263 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~--~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~ 263 (759)
+..++|+|..++..++.-...+ .+.+++.+||+|||.+++..+......+ ..++|+||+..| .|+...|.++++.
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g--~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG--KQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC--CeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 3468999999999998754433 5789999999999998765544443443 579999997755 6788888887654
Q ss_pred --ceEEEEeCChh--HHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhc
Q 004347 264 --VSAIIYHGSKK--ERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKY 339 (759)
Q Consensus 264 --~~~~~~~g~~~--~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~ 339 (759)
+++..++|... ++...... ...+..+|||+|+..+... +...+..+|||||+|++.. .....++.
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~~~----l~~g~~dIVIGTp~ll~~~----v~f~~L~llVIDEahrfgv---~~~~~L~~ 595 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEILKE----LASGKIDILIGTHKLLQKD----VKFKDLGLLIIDEEQRFGV---KQKEKLKE 595 (926)
T ss_pred CCcEEEEEeccccHHHHHHHHHH----HHcCCceEEEchHHHhhCC----CCcccCCEEEeecccccch---hHHHHHHh
Confidence 45556666433 22222211 1124678999999755322 2233568999999999742 23344555
Q ss_pred CC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHh
Q 004347 340 IP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 418 (759)
Q Consensus 340 l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~l 418 (759)
+. ..+.+++||||++..+... +..+.++.. +
T Consensus 596 ~~~~~~vL~~SATpiprtl~~~--l~g~~d~s~----------------------------------------------I 627 (926)
T TIGR00580 596 LRTSVDVLTLSATPIPRTLHMS--MSGIRDLSI----------------------------------------------I 627 (926)
T ss_pred cCCCCCEEEEecCCCHHHHHHH--HhcCCCcEE----------------------------------------------E
Confidence 53 5678999999975433211 111000000 0
Q ss_pred hhhhhHHhhhCCCce--EEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhh
Q 004347 419 RRMKSDVEQMLPRKK--EIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESA 496 (759)
Q Consensus 419 RR~k~dv~~~LP~k~--e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 496 (759)
...|..+ .....+..+.. .++
T Consensus 628 --------~~~p~~R~~V~t~v~~~~~~--~i~----------------------------------------------- 650 (926)
T TIGR00580 628 --------ATPPEDRLPVRTFVMEYDPE--LVR----------------------------------------------- 650 (926)
T ss_pred --------ecCCCCccceEEEEEecCHH--HHH-----------------------------------------------
Confidence 0011100 00111111110 000
Q ss_pred ccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc--CceEEEEeCCCCHHHHHHHHH
Q 004347 497 FSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK--GYEVCRIDGSVRLDERKRQIQ 574 (759)
Q Consensus 497 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~ 574 (759)
..++.. ..++.+++|||+....++.+...|... ++++..+||.|+..+|.+++.
T Consensus 651 -----------------------~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~ 706 (926)
T TIGR00580 651 -----------------------EAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVML 706 (926)
T ss_pred -----------------------HHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHH
Confidence 001111 235789999999999999999999874 789999999999999999999
Q ss_pred HhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCC-CcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 575 DFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDW-NPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 575 ~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
+|.++..+ +|+||.+.++|||++.+++||+++.+. ....+.|++||++|.|.. -++|.|+..+
T Consensus 707 ~F~~Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~~ 770 (926)
T TIGR00580 707 EFYKGEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPHQ 770 (926)
T ss_pred HHHcCCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECCc
Confidence 99985444 599999999999999999999999964 566889999999998854 4556666543
No 52
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.92 E-value=9.5e-24 Score=247.68 Aligned_cols=307 Identities=17% Similarity=0.173 Sum_probs=200.5
Q ss_pred CccchhHHHHHHHHHHHhhcC--CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhCCC-
Q 004347 188 GKLKSYQLKGVKWLISLWQNG--LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVPS- 263 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~--~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~- 263 (759)
.+|+++|..++..+..-+..+ .+.+|..+||+|||+.++..+...... ...+||++|+..+ .|+.+.+.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--GYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 479999999999988754332 467999999999999977555444443 3579999998755 6788889988764
Q ss_pred -ceEEEEeCChhHH--HHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhc-
Q 004347 264 -VSAIIYHGSKKER--DEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKY- 339 (759)
Q Consensus 264 -~~~~~~~g~~~~r--~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~- 339 (759)
+++.+++|+.... ...... ...+..+|+|+|+..+... +...+.++|||||+|++.- .....+..
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~----l~~g~~~IvVgT~~ll~~~----v~~~~l~lvVIDE~Hrfg~---~qr~~l~~~ 406 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEA----IASGEADIVIGTHALIQDD----VEFHNLGLVIIDEQHRFGV---EQRLALREK 406 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHH----HhCCCCCEEEchHHHhccc----chhcccceEEEechhhhhH---HHHHHHHhc
Confidence 6788888876532 222111 1224689999999877432 1223568999999999842 22222332
Q ss_pred CCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 004347 340 IPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLR 419 (759)
Q Consensus 340 l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lR 419 (759)
....+.+++||||++..+.-. +...+.+
T Consensus 407 ~~~~~iL~~SATp~prtl~~~--~~g~~~~-------------------------------------------------- 434 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMT--AYGDLDV-------------------------------------------------- 434 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHH--HcCCCce--------------------------------------------------
Confidence 235778999999964322100 0000000
Q ss_pred hhhhHHhhhCCCc-eEE-EEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 420 RMKSDVEQMLPRK-KEI-ILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 420 R~k~dv~~~LP~k-~e~-~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
.+...+|+. ... ...+...
T Consensus 435 ----s~i~~~p~~r~~i~~~~~~~~------------------------------------------------------- 455 (681)
T PRK10917 435 ----SVIDELPPGRKPITTVVIPDS------------------------------------------------------- 455 (681)
T ss_pred ----EEEecCCCCCCCcEEEEeCcc-------------------------------------------------------
Confidence 000112321 111 1111111
Q ss_pred cCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchh--------HHHHHHHHHHhc--CceEEEEeCCCCHH
Q 004347 498 SDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTK--------ILDIMEYYFNEK--GYEVCRIDGSVRLD 567 (759)
Q Consensus 498 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~--------~ld~L~~~L~~~--g~~~~~l~G~~~~~ 567 (759)
+...+.+.+......|++++|||+... .+..+...|... ++++..+||+++..
T Consensus 456 -----------------~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~ 518 (681)
T PRK10917 456 -----------------RRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPA 518 (681)
T ss_pred -----------------cHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHH
Confidence 001111222223356889999997542 233444555443 57899999999999
Q ss_pred HHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCC-CcchhhHHhhhhhhcCCCCceEEEEEee
Q 004347 568 ERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDW-NPQMDLQAMDRCHRIGQTKPVHVYRLAT 640 (759)
Q Consensus 568 ~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~Vyrli~ 640 (759)
+|.+++++|.++... +|+||.+.++|||++++++||+||++. ....+.|+.||++|.|... ++|.++.
T Consensus 519 eR~~i~~~F~~g~~~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g--~~ill~~ 587 (681)
T PRK10917 519 EKDAVMAAFKAGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQS--YCVLLYK 587 (681)
T ss_pred HHHHHHHHHHcCCCC---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCce--EEEEEEC
Confidence 999999999974433 599999999999999999999999985 5677889999999998654 4444553
No 53
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.92 E-value=2e-24 Score=227.43 Aligned_cols=316 Identities=20% Similarity=0.285 Sum_probs=213.2
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHh---CCCC-CCeEEEECCccHHHH----HHH
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKG---NGLH-GPYLVIAPLSTLSNW----VNE 256 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~---~~~~-~~~LIV~P~sll~~W----~~E 256 (759)
....|.+.|...+.-++. |.+.+.+.-+|+|||+.-+ ..+..+.. .... -.+|||||+..+... .++
T Consensus 101 GF~~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~ 176 (543)
T KOG0342|consen 101 GFETMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKE 176 (543)
T ss_pred CccchhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHH
Confidence 345799999999988876 8899999999999998843 33333332 2222 247999999977543 345
Q ss_pred HHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh--hhhcCccEEEEcCcccccC--hhhH
Q 004347 257 ISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY--LRHYNWKYLVVDEGHRLKN--PKCK 332 (759)
Q Consensus 257 ~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~--l~~~~~~~lIvDEaH~ikn--~~s~ 332 (759)
+.++.+...+.+..|...-+....+ .....+++|.|++.+..++.+. |.....+++|+|||+|+.. ..-.
T Consensus 177 Ll~~h~~~~v~~viGG~~~~~e~~k------l~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~d 250 (543)
T KOG0342|consen 177 LLKYHESITVGIVIGGNNFSVEADK------LVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEED 250 (543)
T ss_pred HHhhCCCcceEEEeCCccchHHHHH------hhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHH
Confidence 6677767666655555443333222 1237899999999998876431 2222338999999999864 2222
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 004347 333 LLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAI 412 (759)
Q Consensus 333 ~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i 412 (759)
+-+.+..
T Consensus 251 i~~Ii~~------------------------------------------------------------------------- 257 (543)
T KOG0342|consen 251 VEQIIKI------------------------------------------------------------------------- 257 (543)
T ss_pred HHHHHHh-------------------------------------------------------------------------
Confidence 2222222
Q ss_pred hhhHHhhhhhhHHhhhCCCceEEEEE-ecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChh
Q 004347 413 LRPFLLRRMKSDVEQMLPRKKEIILY-ATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPD 491 (759)
Q Consensus 413 l~p~~lRR~k~dv~~~LP~k~e~~v~-~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~ 491 (759)
||..+...++ ..+++.-+.+.+..+... . ++-.|.++
T Consensus 258 ----------------lpk~rqt~LFSAT~~~kV~~l~~~~L~~d---~----------------------~~v~~~d~- 295 (543)
T KOG0342|consen 258 ----------------LPKQRQTLLFSATQPSKVKDLARGALKRD---P----------------------VFVNVDDG- 295 (543)
T ss_pred ----------------ccccceeeEeeCCCcHHHHHHHHHhhcCC---c----------------------eEeecCCC-
Confidence 4433333333 334444333322221110 0 00000000
Q ss_pred hhhhhccCCCCCCchH---H---HHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCC
Q 004347 492 LLESAFSDSCFYPPVE---Q---IVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 565 (759)
Q Consensus 492 l~~~~~~~~~~~~~~~---~---l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~ 565 (759)
......+ + ++....++.+|..+|++...+ .|+||||....+.+++...|....+++..|||..+
T Consensus 296 ---------~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~ 365 (543)
T KOG0342|consen 296 ---------GERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQK 365 (543)
T ss_pred ---------CCcchhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCc
Confidence 0000000 0 122334678888888887544 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeC
Q 004347 566 LDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA 641 (759)
Q Consensus 566 ~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 641 (759)
+..|.....+|...++. +|++|+++++|+|++++++||.||+|-+|..|+||+||++|-|-+- .-+-|++.
T Consensus 366 Q~kRT~~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G--~alL~l~p 436 (543)
T KOG0342|consen 366 QNKRTSTFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEG--KALLLLAP 436 (543)
T ss_pred ccccchHHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCc--eEEEEeCh
Confidence 99999999999986666 8999999999999999999999999999999999999999977543 34445554
No 54
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.1e-23 Score=218.27 Aligned_cols=316 Identities=19% Similarity=0.287 Sum_probs=216.5
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhC---CCCC--CeEEEECCccHHHHHHH---
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGN---GLHG--PYLVIAPLSTLSNWVNE--- 256 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~---~~~~--~~LIV~P~sll~~W~~E--- 256 (759)
....+.|.|..++..++. +....+-..||+|||+.- +.++..+..+ .+.+ -.|||+|+..+.-...+
T Consensus 25 GF~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~ 100 (567)
T KOG0345|consen 25 GFEKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQ 100 (567)
T ss_pred CCcccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHH
Confidence 346899999999999986 788888888999999994 4444444332 2223 35999999987655554
Q ss_pred -HHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH---hhhhcCccEEEEcCcccccC--hh
Q 004347 257 -ISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK---YLRHYNWKYLVVDEGHRLKN--PK 330 (759)
Q Consensus 257 -~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~---~l~~~~~~~lIvDEaH~ikn--~~ 330 (759)
|..++|+++..++.|...-...+.... ...++|+|.|++.+..-+.. .+......++|+|||+++.. ..
T Consensus 101 ~F~~~l~~l~~~l~vGG~~v~~Di~~fk-----ee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe 175 (567)
T KOG0345|consen 101 PFLEHLPNLNCELLVGGRSVEEDIKTFK-----EEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFE 175 (567)
T ss_pred HHHHhhhccceEEEecCccHHHHHHHHH-----HhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHH
Confidence 444567888888777765444433221 14678999999988765532 34444578999999999974 44
Q ss_pred hHHHHHHhcCCCCcEE-EEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 004347 331 CKLLKELKYIPIGNKL-LLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKL 409 (759)
Q Consensus 331 s~~~~~l~~l~~~~rl-lLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L 409 (759)
..+...|..++..+|- |.|||-.+. ..+ |
T Consensus 176 ~~~n~ILs~LPKQRRTGLFSATq~~~-v~d-------------------------------------------------L 205 (567)
T KOG0345|consen 176 ASVNTILSFLPKQRRTGLFSATQTQE-VED-------------------------------------------------L 205 (567)
T ss_pred HHHHHHHHhcccccccccccchhhHH-HHH-------------------------------------------------H
Confidence 5666777777777664 346663110 000 0
Q ss_pred HHHhhhHHhhhhhhHHhhhCCCceEEEEEec-C--CHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHh
Q 004347 410 HAILRPFLLRRMKSDVEQMLPRKKEIILYAT-M--TEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKN 486 (759)
Q Consensus 410 ~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~-l--s~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~ 486 (759)
.-..||. .....|... + +|....+|..
T Consensus 206 ----~raGLRN-----------pv~V~V~~k~~~~tPS~L~~~Y~----------------------------------- 235 (567)
T KOG0345|consen 206 ----ARAGLRN-----------PVRVSVKEKSKSATPSSLALEYL----------------------------------- 235 (567)
T ss_pred ----HHhhccC-----------ceeeeecccccccCchhhcceee-----------------------------------
Confidence 0011110 000000000 0 1100000000
Q ss_pred cCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc--CceEEEEeCCC
Q 004347 487 CNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK--GYEVCRIDGSV 564 (759)
Q Consensus 487 ~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~ 564 (759)
.++..-|+..|..+|.. ....|+|||.......++....|... ..+++.+||.+
T Consensus 236 ----------------------v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~ 291 (567)
T KOG0345|consen 236 ----------------------VCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKM 291 (567)
T ss_pred ----------------------EecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchh
Confidence 01112377778888876 36789999999999999888887654 78999999999
Q ss_pred CHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEE
Q 004347 565 RLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR 637 (759)
Q Consensus 565 ~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyr 637 (759)
++..|..++..|.+.... +|++|+++++|||++++|.||.||||-+|..+.||.||++|.|..-.-.||-
T Consensus 292 ~q~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl 361 (567)
T KOG0345|consen 292 SQKARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFL 361 (567)
T ss_pred cchhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEe
Confidence 999999999999973333 7999999999999999999999999999999999999999999776654443
No 55
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=1.4e-23 Score=253.59 Aligned_cols=353 Identities=17% Similarity=0.201 Sum_probs=206.6
Q ss_pred CCccchhHHHHHHHHHHHhhcC-CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC-CccHHHHHHHHHHhCCCc
Q 004347 187 GGKLKSYQLKGVKWLISLWQNG-LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP-LSTLSNWVNEISRFVPSV 264 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~-~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P-~sll~~W~~E~~~~~p~~ 264 (759)
+..|||||.++|..+...+.++ .+++|++.||+|||+++++++..+...+..+++||||| ..|+.||..+|..+.+..
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 3579999999998887766544 57899999999999999999988887766789999999 557799999999874322
Q ss_pred e--E-EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH------hhhhcCccEEEEcCcccccCh------
Q 004347 265 S--A-IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK------YLRHYNWKYLVVDEGHRLKNP------ 329 (759)
Q Consensus 265 ~--~-~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~------~l~~~~~~~lIvDEaH~ikn~------ 329 (759)
. + .++.. . .+... .......|+|+|++.+.+.... .+..-.|++||||||||....
T Consensus 491 ~~~~~~i~~i-~----~L~~~----~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~ 561 (1123)
T PRK11448 491 DQTFASIYDI-K----GLEDK----FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSE 561 (1123)
T ss_pred ccchhhhhch-h----hhhhh----cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccccc
Confidence 1 1 11211 1 11111 1123578999999998765311 122346899999999996310
Q ss_pred -----------hhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHh-------hhhhccCCCCCChH---HHHHHhcccCCC
Q 004347 330 -----------KCKLLKELKYIPIGNKLLLTGTPLQNNLAELWS-------LLHFILPDIFSSLE---EFQSWFDLSGKC 388 (759)
Q Consensus 330 -----------~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~s-------ll~fl~p~~~~~~~---~F~~~f~~~~~~ 388 (759)
.+...+.+..+ ...+|+|||||..+. .++|. +-..+.-+++.+.. .+...+...+
T Consensus 562 ~~~~~~~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t-~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g-- 637 (1123)
T PRK11448 562 GELQFRDQLDYVSKYRRVLDYF-DAVKIGLTATPALHT-TEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG-- 637 (1123)
T ss_pred chhccchhhhHHHHHHHHHhhc-CccEEEEecCCccch-hHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc--
Confidence 12333334434 358899999998543 22222 11111111111000 0000000000
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhHHh-hhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004347 389 NSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVE-QMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFS 467 (759)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k~dv~-~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~ 467 (759)
...... ..+.. +.+ ....+. ..+|.. +....+ .+.+.++....
T Consensus 638 -i~~~~~--------e~~~~----~~~-----~~~~i~~~~l~d~----~~~~~~----~~~~~vi~~~~---------- 681 (1123)
T PRK11448 638 -IHFEKG--------EEVEV----INT-----QTGEIDLATLEDE----VDFEVE----DFNRRVITESF---------- 681 (1123)
T ss_pred -cccccc--------chhhh----cch-----hhhhhhhccCcHH----HhhhHH----HHHHHHhhHHH----------
Confidence 000000 00000 000 000010 112211 000000 00011100000
Q ss_pred cCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHh-hCCCcEEEEccchhHHHHH
Q 004347 468 AGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLF-ARNHKVLVFSQWTKILDIM 546 (759)
Q Consensus 468 ~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~-~~~~kvLIFsq~~~~ld~L 546 (759)
.+. ++..++..+. ..+.|+||||....+++.+
T Consensus 682 ---------------~~~--------------------------------i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i 714 (1123)
T PRK11448 682 ---------------NRV--------------------------------VCEELAKYLDPTGEGKTLIFAATDAHADMV 714 (1123)
T ss_pred ---------------HHH--------------------------------HHHHHHHHHhccCCCcEEEEEcCHHHHHHH
Confidence 000 0011111111 1247999999999998887
Q ss_pred HHHHHhc------Cc---eEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchh
Q 004347 547 EYYFNEK------GY---EVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMD 617 (759)
Q Consensus 547 ~~~L~~~------g~---~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~ 617 (759)
.+.|... ++ .+..++|+++ ++.+++++|.+ +....+++|++.+++|+|.+.+++||++.++-++..|
T Consensus 715 ~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~--~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf 790 (1123)
T PRK11448 715 VRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN--ERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILY 790 (1123)
T ss_pred HHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC--CCCCeEEEEecccccCCCcccccEEEEecCCCCHHHH
Confidence 7776542 22 4567999987 67889999986 3333579999999999999999999999999999999
Q ss_pred hHHhhhhhhcCC---CCceEEEEEe
Q 004347 618 LQAMDRCHRIGQ---TKPVHVYRLA 639 (759)
Q Consensus 618 ~Qa~gR~~RiGQ---~k~V~Vyrli 639 (759)
.|++||+.|..- +....||.++
T Consensus 791 ~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 791 EQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred HHHHhhhccCCccCCCceEEEEehH
Confidence 999999999854 4447777764
No 56
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.9e-24 Score=209.29 Aligned_cols=317 Identities=21% Similarity=0.287 Sum_probs=226.0
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCCCCCeEEEECCccHHHHHHH-HHHhCC--C
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE-ISRFVP--S 263 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E-~~~~~p--~ 263 (759)
.++-..|..++..++. |++.|.-...|.|||.+ +|+++..+.-....-.+||++|+..+.....+ +..... +
T Consensus 48 ekPS~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn 123 (400)
T KOG0328|consen 48 EKPSAIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMN 123 (400)
T ss_pred CCchHHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhccccc
Confidence 3566789999998886 99999999999999988 67777665544334578999999987655544 444433 3
Q ss_pred ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-HhhhhcCccEEEEcCcccccC--hhhHHHHHHhcC
Q 004347 264 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-KYLRHYNWKYLVVDEGHRLKN--PKCKLLKELKYI 340 (759)
Q Consensus 264 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~-~~l~~~~~~~lIvDEaH~ikn--~~s~~~~~l~~l 340 (759)
+.+..+.|.+.-...+++.. -..++|..|++.+..-++ ..|+....+++|+|||+.+.| ...+.+...+.+
T Consensus 124 vq~hacigg~n~gedikkld------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l 197 (400)
T KOG0328|consen 124 VQCHACIGGKNLGEDIKKLD------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYL 197 (400)
T ss_pred ceEEEEecCCccchhhhhhc------ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhC
Confidence 44555555555444443332 355789999998877653 357777889999999999865 456788888888
Q ss_pred C-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 004347 341 P-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLR 419 (759)
Q Consensus 341 ~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lR 419 (759)
+ ....+++|||- +.++..+.++..+
T Consensus 198 p~~~Qvv~~SATl----p~eilemt~kfmt-------------------------------------------------- 223 (400)
T KOG0328|consen 198 PPGAQVVLVSATL----PHEILEMTEKFMT-------------------------------------------------- 223 (400)
T ss_pred CCCceEEEEeccC----cHHHHHHHHHhcC--------------------------------------------------
Confidence 7 55678999994 2333333322222
Q ss_pred hhhhHHhhhCCCceEEEEE-ecCCHHH-HHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 420 RMKSDVEQMLPRKKEIILY-ATMTEHQ-RNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 420 R~k~dv~~~LP~k~e~~v~-~~ls~~q-~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
......+. -.+|.+- +.+|-..
T Consensus 224 -----------dpvrilvkrdeltlEgIKqf~v~v--------------------------------------------- 247 (400)
T KOG0328|consen 224 -----------DPVRILVKRDELTLEGIKQFFVAV--------------------------------------------- 247 (400)
T ss_pred -----------CceeEEEecCCCchhhhhhheeee---------------------------------------------
Confidence 11111111 1122110 1111000
Q ss_pred cCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhh
Q 004347 498 SDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 577 (759)
Q Consensus 498 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 577 (759)
-..--|+..|.++-..+ .-...+|||+.....|+|.+.+...++.+..+||.+.+++|.+++.+|+
T Consensus 248 ------------e~EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFR 313 (400)
T KOG0328|consen 248 ------------EKEEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFR 313 (400)
T ss_pred ------------chhhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhh
Confidence 00011555555555554 2456899999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 578 DVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 578 ~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
++.+. +|++|++-++|||+|.++.||+||.|-|+..|+||+||.+|+|.+- .+..|+....
T Consensus 314 sg~Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d 374 (400)
T KOG0328|consen 314 SGKSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDD 374 (400)
T ss_pred cCCce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHH
Confidence 86666 6999999999999999999999999999999999999999999553 4556776643
No 57
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.91 E-value=3.3e-23 Score=251.33 Aligned_cols=306 Identities=18% Similarity=0.205 Sum_probs=202.2
Q ss_pred CccchhHHHHHHHHHHHhhc--CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhCCC-
Q 004347 188 GKLKSYQLKGVKWLISLWQN--GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVPS- 263 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~--~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~- 263 (759)
..+.|.|..++.-++.-... +.+.+++.+||+|||.+++..+...... ...+||+||+..| .|+...|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--g~qvlvLvPT~eLA~Q~~~~f~~~~~~~ 676 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--HKQVAVLVPTTLLAQQHYDNFRDRFANW 676 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHhhccC
Confidence 37999999999988874433 3678999999999999876444333333 3579999998866 6677778776543
Q ss_pred -ceEEEEeCCh--hHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC
Q 004347 264 -VSAIIYHGSK--KERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI 340 (759)
Q Consensus 264 -~~~~~~~g~~--~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l 340 (759)
+.+.+++|.. .++...... ...+..+|+|+|++.+..+ +...++++|||||+|++... ....++.+
T Consensus 677 ~v~i~~l~g~~s~~e~~~il~~----l~~g~~dIVVgTp~lL~~~----v~~~~L~lLVIDEahrfG~~---~~e~lk~l 745 (1147)
T PRK10689 677 PVRIEMLSRFRSAKEQTQILAE----AAEGKIDILIGTHKLLQSD----VKWKDLGLLIVDEEHRFGVR---HKERIKAM 745 (1147)
T ss_pred CceEEEEECCCCHHHHHHHHHH----HHhCCCCEEEECHHHHhCC----CCHhhCCEEEEechhhcchh---HHHHHHhc
Confidence 4555555433 332222111 1124678999999866432 22235789999999998432 23344555
Q ss_pred C-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 004347 341 P-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLR 419 (759)
Q Consensus 341 ~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lR 419 (759)
+ ....+++||||++..+.-. +..+.+|. ++
T Consensus 746 ~~~~qvLl~SATpiprtl~l~--~~gl~d~~----------------------------------------------~I- 776 (1147)
T PRK10689 746 RADVDILTLTATPIPRTLNMA--MSGMRDLS----------------------------------------------II- 776 (1147)
T ss_pred CCCCcEEEEcCCCCHHHHHHH--HhhCCCcE----------------------------------------------EE-
Confidence 3 5578999999976543211 00010110 00
Q ss_pred hhhhHHhhhCCCce---EEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhh
Q 004347 420 RMKSDVEQMLPRKK---EIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESA 496 (759)
Q Consensus 420 R~k~dv~~~LP~k~---e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 496 (759)
..|+.. ...+.......
T Consensus 777 --------~~~p~~r~~v~~~~~~~~~~---------------------------------------------------- 796 (1147)
T PRK10689 777 --------ATPPARRLAVKTFVREYDSL---------------------------------------------------- 796 (1147)
T ss_pred --------ecCCCCCCCceEEEEecCcH----------------------------------------------------
Confidence 011110 00000101000
Q ss_pred ccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc--CceEEEEeCCCCHHHHHHHHH
Q 004347 497 FSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK--GYEVCRIDGSVRLDERKRQIQ 574 (759)
Q Consensus 497 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~ 574 (759)
.....++.++ .++++++|||+.+..++.+...|... ++++..+||+|+..+|.+++.
T Consensus 797 --------------------~~k~~il~el-~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~ 855 (1147)
T PRK10689 797 --------------------VVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 855 (1147)
T ss_pred --------------------HHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 0011122222 24678999999999999999998876 789999999999999999999
Q ss_pred HhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCC-CCcchhhHHhhhhhhcCCCCceEEEEEeeC
Q 004347 575 DFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSD-WNPQMDLQAMDRCHRIGQTKPVHVYRLATA 641 (759)
Q Consensus 575 ~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 641 (759)
+|.++..+ +|++|++.++|||++.+++||+++++ ++...+.|+.||++|.|... ++|.+...
T Consensus 856 ~Fr~Gk~~---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~~~ 918 (1147)
T PRK10689 856 DFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPH 918 (1147)
T ss_pred HHHhcCCC---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce--EEEEEeCC
Confidence 99985444 59999999999999999999988775 67788999999999998664 45544433
No 58
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.91 E-value=7.5e-23 Score=217.23 Aligned_cols=328 Identities=20% Similarity=0.243 Sum_probs=227.4
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCCCC-----CeEEEECCccHHHHHHH----H
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNGLHG-----PYLVIAPLSTLSNWVNE----I 257 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~~~~-----~~LIV~P~sll~~W~~E----~ 257 (759)
..+...|...|...+. |...|-|.-||+|||+. .+.++..|...+ ++ -.|||.|+..+.-..-+ +
T Consensus 90 v~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-Ws~~DGlGalIISPTRELA~QtFevL~kv 164 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLK-WSPTDGLGALIISPTRELALQTFEVLNKV 164 (758)
T ss_pred ccHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcC-CCCCCCceeEEecchHHHHHHHHHHHHHH
Confidence 4788999999998876 88999999999999998 566677766532 22 37999999877544433 3
Q ss_pred HHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccC--hhhHH
Q 004347 258 SRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKN--PKCKL 333 (759)
Q Consensus 258 ~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn--~~s~~ 333 (759)
.+++....-++++|.. -.....+- ...+|+|+|++.+..++.. .|...+..++|+|||+|+.. ....+
T Consensus 165 gk~h~fSaGLiiGG~~-~k~E~eRi-------~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL 236 (758)
T KOG0343|consen 165 GKHHDFSAGLIIGGKD-VKFELERI-------SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTL 236 (758)
T ss_pred hhccccccceeecCch-hHHHHHhh-------hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHH
Confidence 3344333344555544 33332221 4678999999999988754 56667789999999999974 33344
Q ss_pred HHHHhcCCC-CcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 004347 334 LKELKYIPI-GNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAI 412 (759)
Q Consensus 334 ~~~l~~l~~-~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i 412 (759)
...+..++. +..+|.||||-.+ ..+| ..
T Consensus 237 ~~Ii~~lP~~RQTLLFSATqt~s-vkdL-------------------------------------------------aR- 265 (758)
T KOG0343|consen 237 NAIIENLPKKRQTLLFSATQTKS-VKDL-------------------------------------------------AR- 265 (758)
T ss_pred HHHHHhCChhheeeeeecccchh-HHHH-------------------------------------------------HH-
Confidence 455555543 3457778887211 1111 00
Q ss_pred hhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhh
Q 004347 413 LRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDL 492 (759)
Q Consensus 413 l~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 492 (759)
..|-.....-++..- ....|..
T Consensus 266 --------------LsL~dP~~vsvhe~a--------------------------------------------~~atP~~ 287 (758)
T KOG0343|consen 266 --------------LSLKDPVYVSVHENA--------------------------------------------VAATPSN 287 (758)
T ss_pred --------------hhcCCCcEEEEeccc--------------------------------------------cccChhh
Confidence 012222222222000 0001111
Q ss_pred hhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc--CceEEEEeCCCCHHHHH
Q 004347 493 LESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK--GYEVCRIDGSVRLDERK 570 (759)
Q Consensus 493 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~ 570 (759)
+...+ -++....|+.+|..++..++ ..|.|||..+...+.++...+... |++...+||.|++..|.
T Consensus 288 L~Q~y----------~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 288 LQQSY----------VIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred hhheE----------EEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 10000 01222358999999998864 578999999999999999888765 99999999999999999
Q ss_pred HHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHH
Q 004347 571 RQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILK 650 (759)
Q Consensus 571 ~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~ 650 (759)
++..+|.. .-.++|++|+++++|||++++|+||.||.|-+...|+||.||+.|.+..-...+|-. .+-+|.++.
T Consensus 356 ev~~~F~~---~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~---psEeE~~l~ 429 (758)
T KOG0343|consen 356 EVYKKFVR---KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT---PSEEEAMLK 429 (758)
T ss_pred HHHHHHHH---hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc---chhHHHHHH
Confidence 99999986 334589999999999999999999999999999999999999999987766655433 344678887
Q ss_pred HHHHH
Q 004347 651 RAFSK 655 (759)
Q Consensus 651 ~~~~K 655 (759)
++..|
T Consensus 430 ~Lq~k 434 (758)
T KOG0343|consen 430 KLQKK 434 (758)
T ss_pred HHHHc
Confidence 77766
No 59
>PRK02362 ski2-like helicase; Provisional
Probab=99.91 E-value=4.3e-22 Score=236.98 Aligned_cols=314 Identities=24% Similarity=0.201 Sum_probs=201.3
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC-Cc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-SV 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-~~ 264 (759)
.+|+|+|.+++..++ ..+.|++++.+||+|||+.+. +++..+. ..+++|+|+|.. ++.++.+++.++.+ +.
T Consensus 22 ~~l~p~Q~~ai~~~~---~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 22 EELYPPQAEAVEAGL---LDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred CcCCHHHHHHHHHHH---hCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 479999999997633 458899999999999999975 4455553 246899999955 66888888888754 57
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH---HhhhhcCccEEEEcCcccccChh--hHH---HHH
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR---KYLRHYNWKYLVVDEGHRLKNPK--CKL---LKE 336 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~---~~l~~~~~~~lIvDEaH~ikn~~--s~~---~~~ 336 (759)
++.+++|....... .....+|+|+|++.+..-.+ .++. ..++|||||+|.+.+.. ..+ ...
T Consensus 96 ~v~~~tGd~~~~~~---------~l~~~~IiV~Tpek~~~llr~~~~~l~--~v~lvViDE~H~l~d~~rg~~le~il~r 164 (737)
T PRK02362 96 RVGISTGDYDSRDE---------WLGDNDIIVATSEKVDSLLRNGAPWLD--DITCVVVDEVHLIDSANRGPTLEVTLAK 164 (737)
T ss_pred EEEEEeCCcCcccc---------ccCCCCEEEECHHHHHHHHhcChhhhh--hcCEEEEECccccCCCcchHHHHHHHHH
Confidence 78888886543221 12457899999998755443 1222 45899999999997532 111 122
Q ss_pred HhcC-CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 004347 337 LKYI-PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRP 415 (759)
Q Consensus 337 l~~l-~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p 415 (759)
++.+ ...+.++||||+- |..++...++ ...+. .. .
T Consensus 165 l~~~~~~~qii~lSATl~--n~~~la~wl~---~~~~~------~~-------------------------------~-- 200 (737)
T PRK02362 165 LRRLNPDLQVVALSATIG--NADELADWLD---AELVD------SE-------------------------------W-- 200 (737)
T ss_pred HHhcCCCCcEEEEcccCC--CHHHHHHHhC---CCccc------CC-------------------------------C--
Confidence 2222 3456799999963 3444433221 11110 00 0
Q ss_pred HHhhhhhhHHhhhCCCceEEEEEec----CCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChh
Q 004347 416 FLLRRMKSDVEQMLPRKKEIILYAT----MTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPD 491 (759)
Q Consensus 416 ~~lRR~k~dv~~~LP~k~e~~v~~~----ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~ 491 (759)
-|-.....++.. ....+..
T Consensus 201 -------------rpv~l~~~v~~~~~~~~~~~~~~-------------------------------------------- 223 (737)
T PRK02362 201 -------------RPIDLREGVFYGGAIHFDDSQRE-------------------------------------------- 223 (737)
T ss_pred -------------CCCCCeeeEecCCeecccccccc--------------------------------------------
Confidence 010000001000 0000000
Q ss_pred hhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc------------------
Q 004347 492 LLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK------------------ 553 (759)
Q Consensus 492 l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~------------------ 553 (759)
+....+.. ...++......++++||||+.+.....+...|...
T Consensus 224 ------------------~~~~~~~~-~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~ 284 (737)
T PRK02362 224 ------------------VEVPSKDD-TLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAE 284 (737)
T ss_pred ------------------CCCccchH-HHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 00000101 11122222346789999999988766555544321
Q ss_pred ------------------CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE----eC--
Q 004347 554 ------------------GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL----YD-- 609 (759)
Q Consensus 554 ------------------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~----~D-- 609 (759)
...+..+||+++..+|..+.+.|++ +.++| |++|.+++.|||+++.++||. ||
T Consensus 285 ~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~--G~i~V-LvaT~tla~GvnlPa~~VVI~~~~~yd~~ 361 (737)
T PRK02362 285 EIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD--RLIKV-ISSTPTLAAGLNLPARRVIIRDYRRYDGG 361 (737)
T ss_pred HHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc--CCCeE-EEechhhhhhcCCCceEEEEecceeecCC
Confidence 1357889999999999999999997 45554 999999999999999988886 87
Q ss_pred ---CCCCcchhhHHhhhhhhcCCCCceEEEEEeeC
Q 004347 610 ---SDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA 641 (759)
Q Consensus 610 ---~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 641 (759)
.|.++..|.|++||++|.|....-.++-++..
T Consensus 362 ~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 362 AGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 57888999999999999998765555555544
No 60
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.90 E-value=1.6e-22 Score=213.79 Aligned_cols=340 Identities=20% Similarity=0.302 Sum_probs=220.8
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHh--------CCCCCC-eEEEECCccHHH-HHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKG--------NGLHGP-YLVIAPLSTLSN-WVN 255 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~--------~~~~~~-~LIV~P~sll~~-W~~ 255 (759)
...+.|.|..++.-++. .++.|+..|+|+|||.. .|.++.++.. +..-|| .+|++|+..|.| -..
T Consensus 265 y~eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIee 340 (673)
T KOG0333|consen 265 YKEPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEE 340 (673)
T ss_pred CCCCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHH
Confidence 34678999999987664 78889999999999965 3344433322 222344 699999997765 555
Q ss_pred HHHHhCC--CceEE-EEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-HhhhhcCccEEEEcCcccccC--h
Q 004347 256 EISRFVP--SVSAI-IYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-KYLRHYNWKYLVVDEGHRLKN--P 329 (759)
Q Consensus 256 E~~~~~p--~~~~~-~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~-~~l~~~~~~~lIvDEaH~ikn--~ 329 (759)
|-.+|.- ++.++ ++.|-..+.+.+ .....+.|+|.|+..+...+. .+|...+..|||+|||+++-. .
T Consensus 341 Et~kf~~~lg~r~vsvigg~s~EEq~f-------qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgf 413 (673)
T KOG0333|consen 341 ETNKFGKPLGIRTVSVIGGLSFEEQGF-------QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGF 413 (673)
T ss_pred HHHHhcccccceEEEEecccchhhhhh-------hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccc
Confidence 6666642 23444 445544443322 223578999999999887663 356666778999999999864 2
Q ss_pred hhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 004347 330 KCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKL 409 (759)
Q Consensus 330 ~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L 409 (759)
.-.....|..++ ..|- -.+.+++..| .++
T Consensus 414 E~dv~~iL~~mP-----------ssn~---------------k~~tde~~~~-------------------------~~~ 442 (673)
T KOG0333|consen 414 EPDVQKILEQMP-----------SSNA---------------KPDTDEKEGE-------------------------ERV 442 (673)
T ss_pred cHHHHHHHHhCC-----------cccc---------------CCCccchhhH-------------------------HHH
Confidence 222222222221 1110 0000111111 001
Q ss_pred HHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCC
Q 004347 410 HAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNH 489 (759)
Q Consensus 410 ~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 489 (759)
.+. |-- .---....+..+.|++.-..+-+.++.+
T Consensus 443 ~~~---~~~---------~k~yrqT~mftatm~p~verlar~ylr~---------------------------------- 476 (673)
T KOG0333|consen 443 RKN---FSS---------SKKYRQTVMFTATMPPAVERLARSYLRR---------------------------------- 476 (673)
T ss_pred Hhh---ccc---------ccceeEEEEEecCCChHHHHHHHHHhhC----------------------------------
Confidence 100 000 0000122344467777665554444322
Q ss_pred hhhhhhhccCCCCCCchHH---HHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCH
Q 004347 490 PDLLESAFSDSCFYPPVEQ---IVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRL 566 (759)
Q Consensus 490 p~l~~~~~~~~~~~~~~~~---l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~ 566 (759)
|..+....... ..+-+++ ++..+.|...|.++|... ....+|||.+....+|.|.+.|.+.||+++++||+-++
T Consensus 477 pv~vtig~~gk-~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~q 553 (673)
T KOG0333|consen 477 PVVVTIGSAGK-PTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQ 553 (673)
T ss_pred CeEEEeccCCC-CccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccH
Confidence 11111111100 0111111 133456888999999875 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 567 DERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 567 ~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
++|..++..|+.+..+ +|++|+++|+|||++++++||+||..-+...|.|||||++|.|+.-.+ ..|+|..
T Consensus 554 eQRe~aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta--iSflt~~ 624 (673)
T KOG0333|consen 554 EQRENALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA--ISFLTPA 624 (673)
T ss_pred HHHHHHHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee--EEEeccc
Confidence 9999999999986666 799999999999999999999999999999999999999999987653 3355543
No 61
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.9e-22 Score=224.24 Aligned_cols=315 Identities=18% Similarity=0.233 Sum_probs=224.7
Q ss_pred cccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC-CccHHHHHHHHHHhCC
Q 004347 184 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP-LSTLSNWVNEISRFVP 262 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P-~sll~~W~~E~~~~~p 262 (759)
.+....+||-|.++|..+++ +.++|...+||.||++. ..+...-..|.+|||.| .++.....+.+....
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlC-----yQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~G- 81 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLC-----YQIPALLLEGLTLVVSPLISLMKDQVDQLEAAG- 81 (590)
T ss_pred HhCccccCCCHHHHHHHHHc----CCcEEEEccCCCCcchH-----hhhHHHhcCCCEEEECchHHHHHHHHHHHHHcC-
Confidence 34456899999999999987 89999999999999954 22222222579999999 456666777777664
Q ss_pred CceEEEEeCC--hhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH-HHhhhhcCccEEEEcCcccccC-------hhhH
Q 004347 263 SVSAIIYHGS--KKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA-RKYLRHYNWKYLVVDEGHRLKN-------PKCK 332 (759)
Q Consensus 263 ~~~~~~~~g~--~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~-~~~l~~~~~~~lIvDEaH~ikn-------~~s~ 332 (759)
+.+...+++ ..++..+.... ..+..+++..+++.+.... .+.+...+..+++|||||++.. ....
T Consensus 82 -i~A~~lnS~l~~~e~~~v~~~l----~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 82 -IRAAYLNSTLSREERQQVLNQL----KSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred -ceeehhhcccCHHHHHHHHHHH----hcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHH
Confidence 444444443 44444433332 2346789999999987653 4567788899999999999854 3456
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 004347 333 LLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAI 412 (759)
Q Consensus 333 ~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i 412 (759)
+......++...+++||||--+--..++-..|+.-.|..|-.. |+.
T Consensus 157 lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s------fdR---------------------------- 202 (590)
T COG0514 157 LGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS------FDR---------------------------- 202 (590)
T ss_pred HHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec------CCC----------------------------
Confidence 7777778888899999999766666666666665544332111 100
Q ss_pred hhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhh
Q 004347 413 LRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDL 492 (759)
Q Consensus 413 l~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 492 (759)
|.....++... ++.
T Consensus 203 -----------------pNi~~~v~~~~-~~~------------------------------------------------ 216 (590)
T COG0514 203 -----------------PNLALKVVEKG-EPS------------------------------------------------ 216 (590)
T ss_pred -----------------chhhhhhhhcc-cHH------------------------------------------------
Confidence 00000000000 000
Q ss_pred hhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHH
Q 004347 493 LESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQ 572 (759)
Q Consensus 493 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 572 (759)
.++.++.+ .....+...||||.++...+.+..+|...|+....+||+++.++|..+
T Consensus 217 ---------------------~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~ 272 (590)
T COG0514 217 ---------------------DQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERV 272 (590)
T ss_pred ---------------------HHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHH
Confidence 01111111 111235568999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 573 IQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 573 i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
-++|..++.. ++++|.|.|.|||-++...|||||.|-+...|.|-+||++|.|....+.. |+...
T Consensus 273 q~~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ail--l~~~~ 337 (590)
T COG0514 273 QQAFLNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAIL--LYSPE 337 (590)
T ss_pred HHHHhcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEE--eeccc
Confidence 9999974444 69999999999999999999999999999999999999999997766443 44433
No 62
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=3.6e-23 Score=217.73 Aligned_cols=370 Identities=16% Similarity=0.203 Sum_probs=221.3
Q ss_pred CccchhHHHHHHHHHHHhh-----cCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCC-CCCeEEEECCccH-HHHHHHHHH
Q 004347 188 GKLKSYQLKGVKWLISLWQ-----NGLNGILADQMGLGKTIQ-TIAFLAHLKGNGL-HGPYLVIAPLSTL-SNWVNEISR 259 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~-----~~~~~ILademGlGKTl~-ai~li~~l~~~~~-~~~~LIV~P~sll-~~W~~E~~~ 259 (759)
..+.|.|...+.|++.-.. .++...++..||+|||+. +|.+++.|..+.. .-+.+||+|+..+ .|-.+.|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 4789999999999987543 245568999999999999 7777777766532 3478999998865 678889999
Q ss_pred hCCC--ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccChhhH--H
Q 004347 260 FVPS--VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKNPKCK--L 333 (759)
Q Consensus 260 ~~p~--~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn~~s~--~ 333 (759)
|++. +.|+...|...-+.+.++.. ........+|+|+|++.+..++.+ -|...+..++|||||+|+.+..-+ +
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~-~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl 316 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLA-SDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWL 316 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHh-cCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHH
Confidence 9875 45666666655555443322 122223569999999999988742 233445689999999999763321 1
Q ss_pred HHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 004347 334 LKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAIL 413 (759)
Q Consensus 334 ~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il 413 (759)
...+.......++.+++- +..+..- .
T Consensus 317 ~~v~~~~~~~k~~~~~~n--------ii~~~~~----------------------------------------------~ 342 (620)
T KOG0350|consen 317 DTVMSLCKTMKRVACLDN--------IIRQRQA----------------------------------------------P 342 (620)
T ss_pred HHHHHHhCCchhhcChhh--------hhhhccc----------------------------------------------C
Confidence 111112222211111110 0000000 0
Q ss_pred hhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHH-hcCChhh
Q 004347 414 RPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRK-NCNHPDL 492 (759)
Q Consensus 414 ~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk-~~~hp~l 492 (759)
.|.++--+-.-... + ..+.++-++...+... -..|.. -.++|.+
T Consensus 343 ~pt~~~e~~t~~~~-~-----------~~~l~kL~~satLsqd-----------------------P~Kl~~l~l~~Prl 387 (620)
T KOG0350|consen 343 QPTVLSELLTKLGK-L-----------YPPLWKLVFSATLSQD-----------------------PSKLKDLTLHIPRL 387 (620)
T ss_pred CchhhHHHHhhcCC-c-----------CchhHhhhcchhhhcC-----------------------hHHHhhhhcCCCce
Confidence 00000000000000 0 0000110000000000 000111 1233433
Q ss_pred hhhhccCCCCCCchHH----HH--hhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHH----hcCceEEEEeC
Q 004347 493 LESAFSDSCFYPPVEQ----IV--EQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDG 562 (759)
Q Consensus 493 ~~~~~~~~~~~~~~~~----l~--~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~l~G 562 (759)
+.........|..... .+ +.--|-..+..++... ...++|+|+++......+...|. ..++++..++|
T Consensus 388 ~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~ 465 (620)
T KOG0350|consen 388 FHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTG 465 (620)
T ss_pred EEeecccceeeecChhhhhceeecccccchHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhh
Confidence 3221111111110000 01 1112445566666653 57899999999998887777776 33566777999
Q ss_pred CCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 563 SVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 563 ~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
+.+.+.|.+.+.+|+.++ ++ +||+++++++|||+...+.||+||+|-....|.||+||+.|.||.- ++|.++...
T Consensus 466 ~l~~k~r~k~l~~f~~g~--i~-vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~ 540 (620)
T KOG0350|consen 466 QLNGKRRYKMLEKFAKGD--IN-VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH 540 (620)
T ss_pred hhhHHHHHHHHHHHhcCC--ce-EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc
Confidence 999999999999999844 44 5999999999999999999999999999999999999999999875 556666654
Q ss_pred CHHHHHHHHHHHHH
Q 004347 643 SVEGRILKRAFSKL 656 (759)
Q Consensus 643 TvEe~i~~~~~~K~ 656 (759)
|.+.+.....|.
T Consensus 541 --~~r~F~klL~~~ 552 (620)
T KOG0350|consen 541 --EKRLFSKLLKKT 552 (620)
T ss_pred --cchHHHHHHHHh
Confidence 445544444443
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.90 E-value=8.7e-22 Score=216.00 Aligned_cols=317 Identities=16% Similarity=0.158 Sum_probs=196.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCCceEEEEeCChhHHH-----------H
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVSAIIYHGSKKERD-----------E 278 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~~~~~~g~~~~r~-----------~ 278 (759)
.++..+||+|||.+++..+......+..+++++++|.. ++.++.+.+..++.. .+..+||...... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHHH
Confidence 57889999999999888777666556677999999954 668888889888754 4555565443110 0
Q ss_pred HH-HhcCCCCCCCCCCEEEecHHHHHHHHHH-------hhhhcCccEEEEcCcccccChhh-HHHHHHhcCC--CCcEEE
Q 004347 279 IR-RKHMPRAIGPKFPIVVTSYEVALSDARK-------YLRHYNWKYLVVDEGHRLKNPKC-KLLKELKYIP--IGNKLL 347 (759)
Q Consensus 279 ~~-~~~~~~~~~~~~~vvIttye~l~~~~~~-------~l~~~~~~~lIvDEaH~ikn~~s-~~~~~l~~l~--~~~rll 347 (759)
.. ............+|+++|++.+...+.. .+......+||+||+|.+..... .+...+..+. ....++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~ 160 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILL 160 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 00 0000000112467999999988655422 12223347999999999975322 2333333332 446799
Q ss_pred EecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhHHhh
Q 004347 348 LTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQ 427 (759)
Q Consensus 348 LTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~ 427 (759)
+|||+- +.+.+ |...+... ...
T Consensus 161 ~SATlp-~~l~~------------------~~~~~~~~---------------------------------------~~~ 182 (358)
T TIGR01587 161 MSATLP-KFLKE------------------YAEKIGYV---------------------------------------EFN 182 (358)
T ss_pred EecCch-HHHHH------------------HHhcCCCc---------------------------------------ccc
Confidence 999962 11111 10000000 000
Q ss_pred hCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCCCchH
Q 004347 428 MLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVE 507 (759)
Q Consensus 428 ~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 507 (759)
..++. .+.. ....|+.....
T Consensus 183 ~~~~~---------~~~~---------------------------------------~~~~~~~~~~~------------ 202 (358)
T TIGR01587 183 EPLDL---------KEER---------------------------------------RFERHRFIKIE------------ 202 (358)
T ss_pred cCCCC---------cccc---------------------------------------ccccccceeec------------
Confidence 00000 0000 00000000000
Q ss_pred HHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCc--eEEEEeCCCCHHHHHHH----HHHhhccCC
Q 004347 508 QIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGY--EVCRIDGSVRLDERKRQ----IQDFNDVNS 581 (759)
Q Consensus 508 ~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~--~~~~l~G~~~~~~R~~~----i~~F~~~~~ 581 (759)
.....|...+.+++..+ ..+.++||||+....++.+...|...+. .+..+||.++..+|.+. ++.|.++.
T Consensus 203 --~~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~- 278 (358)
T TIGR01587 203 --SDKVGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE- 278 (358)
T ss_pred --cccccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC-
Confidence 00123556666666443 4678999999999999999999988766 48999999999999764 88898733
Q ss_pred CceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCC----ceEEEEEeeCC---CHHHHHHHHHHH
Q 004347 582 SYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTK----PVHVYRLATAQ---SVEGRILKRAFS 654 (759)
Q Consensus 582 ~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k----~V~Vyrli~~~---TvEe~i~~~~~~ 654 (759)
.+ +|+||+++++|||+. +++||+++.| +..+.||+||++|.|... .|.||.....+ ..+..++++-..
T Consensus 279 -~~-ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~ 353 (358)
T TIGR01587 279 -KF-VIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQ 353 (358)
T ss_pred -Ce-EEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHH
Confidence 33 699999999999995 8999998876 789999999999999754 35555554444 455666655544
Q ss_pred H
Q 004347 655 K 655 (759)
Q Consensus 655 K 655 (759)
+
T Consensus 354 ~ 354 (358)
T TIGR01587 354 K 354 (358)
T ss_pred H
Confidence 4
No 64
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=2.2e-22 Score=203.95 Aligned_cols=312 Identities=19% Similarity=0.262 Sum_probs=211.6
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCCCCCeEEEECCccHHHHHHH-HHHh--CC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE-ISRF--VP 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E-~~~~--~p 262 (759)
-.+..|.|...+..+++ |++||-+.-+|+|||.. ++.++..+.+....-=.||++|+.-+.-...| |.-. .-
T Consensus 27 i~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l 102 (442)
T KOG0340|consen 27 IKKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLL 102 (442)
T ss_pred CCCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccc
Confidence 35788999999999987 99999999999999988 67777777665444456999999877655555 3322 22
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh-----hhhcCccEEEEcCcccccChhhHHHHHH
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY-----LRHYNWKYLVVDEGHRLKNPKCKLLKEL 337 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~-----l~~~~~~~lIvDEaH~ikn~~s~~~~~l 337 (759)
+.++.++.|....-.. ...+...+++||+|++.+...+... ....+..++|+|||+++.+..
T Consensus 103 ~lK~~vivGG~d~i~q------a~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~------- 169 (442)
T KOG0340|consen 103 NLKVSVIVGGTDMIMQ------AAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC------- 169 (442)
T ss_pred cceEEEEEccHHHhhh------hhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc-------
Confidence 4566666555433211 1223468899999999876554222 122345799999999987521
Q ss_pred hcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 338 KYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 338 ~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
|... |.
T Consensus 170 ----------------------------------------f~d~---------------------------L~------- 175 (442)
T KOG0340|consen 170 ----------------------------------------FPDI---------------------------LE------- 175 (442)
T ss_pred ----------------------------------------hhhH---------------------------Hh-------
Confidence 1100 00
Q ss_pred hhhhhhHHhhhCCCceEEEEE-ecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhh-h
Q 004347 418 LRRMKSDVEQMLPRKKEIILY-ATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLE-S 495 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e~~v~-~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~-~ 495 (759)
.+..-+|.++++.++ +.++..-+.+...-. +.++.+. +
T Consensus 176 ------~i~e~lP~~RQtLlfSATitd~i~ql~~~~i----------------------------------~k~~a~~~e 215 (442)
T KOG0340|consen 176 ------GIEECLPKPRQTLLFSATITDTIKQLFGCPI----------------------------------TKSIAFELE 215 (442)
T ss_pred ------hhhccCCCccceEEEEeehhhHHHHhhcCCc----------------------------------ccccceEEe
Confidence 011224444333222 333322111100000 0000000 0
Q ss_pred hccCCCCCCchHH------HHhhccHHHHHHHHHHHHhh-CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHH
Q 004347 496 AFSDSCFYPPVEQ------IVEQCGKFRLLDRLLARLFA-RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDE 568 (759)
Q Consensus 496 ~~~~~~~~~~~~~------l~~~s~K~~~L~~lL~~l~~-~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~ 568 (759)
..++ .+.++. ++...+|-.+|..+|..... ....++||.|.+....+|...|...++.+..+|+.|++.+
T Consensus 216 ~~~~---vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~e 292 (442)
T KOG0340|consen 216 VIDG---VSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKE 292 (442)
T ss_pred ccCC---CCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHH
Confidence 0010 111111 13345688899999988766 5778999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCc-eEE
Q 004347 569 RKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKP-VHV 635 (759)
Q Consensus 569 R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~-V~V 635 (759)
|...+.+|++ ..++ +|++|+++++|+|++.++.||+||.|-.|..|+||.||..|.|..-. +.+
T Consensus 293 R~~aLsrFrs--~~~~-iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSi 357 (442)
T KOG0340|consen 293 RLAALSRFRS--NAAR-ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISI 357 (442)
T ss_pred HHHHHHHHhh--cCcc-EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEE
Confidence 9999999997 3344 59999999999999999999999999999999999999999997654 443
No 65
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=4.7e-22 Score=210.69 Aligned_cols=346 Identities=19% Similarity=0.320 Sum_probs=198.6
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCC-----CCCC-eEEEECCccHHHHHH-HHHH
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNG-----LHGP-YLVIAPLSTLSNWVN-EISR 259 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~-----~~~~-~LIV~P~sll~~W~~-E~~~ 259 (759)
..+...|..+|.-++. |+..++-..||+|||+. ++.++..|.... ..|+ .|||+|+..+..... -+.+
T Consensus 158 ~~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qK 233 (708)
T KOG0348|consen 158 SAPTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQK 233 (708)
T ss_pred CccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHH
Confidence 3677899999999986 89999999999999999 566666665432 2355 599999987654444 4555
Q ss_pred hCCCce----EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccChhhHH
Q 004347 260 FVPSVS----AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKNPKCKL 333 (759)
Q Consensus 260 ~~p~~~----~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn~~s~~ 333 (759)
....+. .++++|.+......|.. ...+|+|.|++.+.+++.+ .+......+||+|||++|..-.
T Consensus 234 Ll~~~hWIVPg~lmGGEkkKSEKARLR-------KGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLG--- 303 (708)
T KOG0348|consen 234 LLKPFHWIVPGVLMGGEKKKSEKARLR-------KGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELG--- 303 (708)
T ss_pred HhcCceEEeeceeecccccccHHHHHh-------cCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhcc---
Confidence 543333 33455544332222211 4678999999999988743 3555567899999999986411
Q ss_pred HHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 004347 334 LKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAIL 413 (759)
Q Consensus 334 ~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il 413 (759)
--.++-.+++.+.... + ..+
T Consensus 304 ----------------------fekdit~Il~~v~~~~--------~-----~e~------------------------- 323 (708)
T KOG0348|consen 304 ----------------------FEKDITQILKAVHSIQ--------N-----AEC------------------------- 323 (708)
T ss_pred ----------------------chhhHHHHHHHHhhcc--------c-----hhc-------------------------
Confidence 0011111111110000 0 000
Q ss_pred hhHHhhhhhhHHhhhCCCceEEE-EEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhh
Q 004347 414 RPFLLRRMKSDVEQMLPRKKEII-LYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDL 492 (759)
Q Consensus 414 ~p~~lRR~k~dv~~~LP~k~e~~-v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 492 (759)
-...||+....+ +...||+.-..+-+.-+...+ ..........+.--...+ +-.+++.
T Consensus 324 -----------~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv--------~I~ld~s~~~~~p~~~a~-~ev~~~~- 382 (708)
T KOG0348|consen 324 -----------KDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPV--------YISLDKSHSQLNPKDKAV-QEVDDGP- 382 (708)
T ss_pred -----------ccccccHHHHhHhhhhhhHHHHHHHhhccccCce--------eeeccchhhhcCcchhhh-hhcCCcc-
Confidence 001122211000 001111110000000000000 000000000000000001 1112220
Q ss_pred hhhhccCCCCCCchHHHHh------hccHHHHHHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHHh------------
Q 004347 493 LESAFSDSCFYPPVEQIVE------QCGKFRLLDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNE------------ 552 (759)
Q Consensus 493 ~~~~~~~~~~~~~~~~l~~------~s~K~~~L~~lL~~l~~--~~~kvLIFsq~~~~ld~L~~~L~~------------ 552 (759)
....+ ..+..-+++.. .--++..|..+|..... ...|+|||....++.+.-.+.|..
T Consensus 383 ~~~~l---~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~ 459 (708)
T KOG0348|consen 383 AGDKL---DSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGA 459 (708)
T ss_pred ccccc---ccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCC
Confidence 00000 01112222222 12244556666665432 345889999988888877766653
Q ss_pred ----------cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhh
Q 004347 553 ----------KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMD 622 (759)
Q Consensus 553 ----------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~g 622 (759)
.+.++.++||+|++++|...+..|...... +|+||+++++||||+.+..||-||+|..+..|++|+|
T Consensus 460 ~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~---VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvG 536 (708)
T KOG0348|consen 460 PDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA---VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVG 536 (708)
T ss_pred cccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce---EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhh
Confidence 145699999999999999999999974333 7999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceE
Q 004347 623 RCHRIGQTKPVH 634 (759)
Q Consensus 623 R~~RiGQ~k~V~ 634 (759)
|+.|+|-+-.-.
T Consensus 537 RTARaG~kG~al 548 (708)
T KOG0348|consen 537 RTARAGEKGEAL 548 (708)
T ss_pred hhhhccCCCceE
Confidence 999999876643
No 66
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.89 E-value=1e-21 Score=225.94 Aligned_cols=388 Identities=19% Similarity=0.204 Sum_probs=246.4
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhCCCC-----CCeEEEECCccHHH-HHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNGLH-----GPYLVIAPLSTLSN-WVNEISR 259 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~~~~-----~~~LIV~P~sll~~-W~~E~~~ 259 (759)
...|+|+|..++..+.. |.|.++..+||+|||.+|+ .++..+...+.. -.+|.|+|...|.+ -.+.+..
T Consensus 20 ~~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~ 95 (814)
T COG1201 20 FTSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE 95 (814)
T ss_pred cCCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 56899999999988875 9999999999999999975 555666666311 13799999776644 4444544
Q ss_pred hC--CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH-----HHhhhhcCccEEEEcCcccccCh--h
Q 004347 260 FV--PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA-----RKYLRHYNWKYLVVDEGHRLKNP--K 330 (759)
Q Consensus 260 ~~--p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~-----~~~l~~~~~~~lIvDEaH~ikn~--~ 330 (759)
|. -++.+-+-||+..+..+- +.....++|+|||++.+.-.+ +.+|.+ ..+|||||.|.+.+. .
T Consensus 96 ~~~~~G~~v~vRhGDT~~~er~------r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~--vr~VIVDEiHel~~sKRG 167 (814)
T COG1201 96 PLRELGIEVAVRHGDTPQSEKQ------KMLKNPPHILITTPESLAILLNSPKFRELLRD--VRYVIVDEIHALAESKRG 167 (814)
T ss_pred HHHHcCCccceecCCCChHHhh------hccCCCCcEEEeChhHHHHHhcCHHHHHHhcC--CcEEEeehhhhhhccccc
Confidence 43 256778888877654431 223468899999999875433 344554 479999999999853 3
Q ss_pred hHHHHHHhcC---C-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHH
Q 004347 331 CKLLKELKYI---P-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMV 406 (759)
Q Consensus 331 s~~~~~l~~l---~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 406 (759)
+.++-.|.++ . .-.||+||||- .++.++.. ||.+.-.
T Consensus 168 ~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~~var---fL~g~~~---------------------------------- 208 (814)
T COG1201 168 VQLALSLERLRELAGDFQRIGLSATV--GPPEEVAK---FLVGFGD---------------------------------- 208 (814)
T ss_pred hhhhhhHHHHHhhCcccEEEeehhcc--CCHHHHHH---HhcCCCC----------------------------------
Confidence 4555555444 3 46789999994 24443322 2211100
Q ss_pred HHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHh
Q 004347 407 AKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKN 486 (759)
Q Consensus 407 ~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~ 486 (759)
....+......+.++.+.++-......
T Consensus 209 --------------~~~Iv~~~~~k~~~i~v~~p~~~~~~~--------------------------------------- 235 (814)
T COG1201 209 --------------PCEIVDVSAAKKLEIKVISPVEDLIYD--------------------------------------- 235 (814)
T ss_pred --------------ceEEEEcccCCcceEEEEecCCccccc---------------------------------------
Confidence 000011112222222222211110000
Q ss_pred cCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcC-ceEEEEeCCCC
Q 004347 487 CNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKG-YEVCRIDGSVR 565 (759)
Q Consensus 487 ~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g-~~~~~l~G~~~ 565 (759)
. .=...+...+..+..+...+|||++.+.+.+.+...|...+ ..+...|||.+
T Consensus 236 -~-------------------------~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlS 289 (814)
T COG1201 236 -E-------------------------ELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLS 289 (814)
T ss_pred -c-------------------------chhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeeccccc
Confidence 0 00111222233333445689999999999999999999886 89999999999
Q ss_pred HHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhh-hhcCCCCceEEEEEeeCCCH
Q 004347 566 LDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRC-HRIGQTKPVHVYRLATAQSV 644 (759)
Q Consensus 566 ~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~-~RiGQ~k~V~Vyrli~~~Tv 644 (759)
.+.|...-++|.++. .++ ++||..+.+|||+-.+|.||+|.+|-.-....||+||+ ||+|.+.. +++++.+ .
T Consensus 290 re~R~~vE~~lk~G~--lra-vV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Sk---g~ii~~~-r 362 (814)
T COG1201 290 RELRLEVEERLKEGE--LKA-VVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSK---GIIIAED-R 362 (814)
T ss_pred HHHHHHHHHHHhcCC--ceE-EEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCccc---EEEEecC-H
Confidence 999999999999854 555 89999999999999999999999999999999999999 77776443 4445555 5
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCccc---cccccccccccCCHHHHHHhhcchhhhhhhhhccCCCHHHHHHHHhhh
Q 004347 645 EGRILKRAFSKLKLEHVVIG----KGQFH---QERTKSNCIDALEEEDLLALLQDEETAEDKMIQTDIGEEDLERVLDRA 717 (759)
Q Consensus 645 Ee~i~~~~~~K~~l~~~vi~----~~~~~---~~~~~~~~~~~~~~~el~~ll~~~~~~~~~~~~~~~~~e~l~~~l~~~ 717 (759)
++.+-..+..+..+...+-. .+-++ +.-........++.+++..+++..... .+++.++++.+++--
T Consensus 363 ~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy------~~L~~e~f~~v~~~l 436 (814)
T COG1201 363 DDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPY------ADLSREDFRLVLRYL 436 (814)
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhcccc------ccCCHHHHHHHHHHH
Confidence 55554444444443322221 11110 000000001134455555555544332 348899999888764
No 67
>PRK01172 ski2-like helicase; Provisional
Probab=99.88 E-value=6.6e-21 Score=225.22 Aligned_cols=308 Identities=20% Similarity=0.183 Sum_probs=192.2
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC-Cce
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-SVS 265 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-~~~ 265 (759)
..|+|+|.+++..+. ++.+.+++.+||+|||+++...+...... .+++++|+|.. +..++.+++.++.. +..
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~l~~~g~~ 94 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSRLRSLGMR 94 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHHHhhcCCe
Confidence 469999999998764 48899999999999999876554443333 36899999965 55778888887643 456
Q ss_pred EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH---hhhhcCccEEEEcCcccccChh-h-HH---HHHH
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK---YLRHYNWKYLVVDEGHRLKNPK-C-KL---LKEL 337 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~---~l~~~~~~~lIvDEaH~ikn~~-s-~~---~~~l 337 (759)
+....|....... .....+|+|+|++.+..-.+. .+. ++++|||||+|.+.+.. . .+ ...+
T Consensus 95 v~~~~G~~~~~~~---------~~~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEaH~l~d~~rg~~le~ll~~~ 163 (674)
T PRK01172 95 VKISIGDYDDPPD---------FIKRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEIHIIGDEDRGPTLETVLSSA 163 (674)
T ss_pred EEEEeCCCCCChh---------hhccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecchhccCCCccHHHHHHHHHH
Confidence 6667675432211 113569999999976544321 222 46899999999996422 1 11 1222
Q ss_pred hcCC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhH
Q 004347 338 KYIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPF 416 (759)
Q Consensus 338 ~~l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~ 416 (759)
+.++ ..+.++||||+- |..+ |..|+...... +
T Consensus 164 ~~~~~~~riI~lSATl~--n~~~------------------la~wl~~~~~~--------------------------~- 196 (674)
T PRK01172 164 RYVNPDARILALSATVS--NANE------------------LAQWLNASLIK--------------------------S- 196 (674)
T ss_pred HhcCcCCcEEEEeCccC--CHHH------------------HHHHhCCCccC--------------------------C-
Confidence 2333 346799999962 2333 33333211000 0
Q ss_pred HhhhhhhHHhhhCCCceE-EEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhh
Q 004347 417 LLRRMKSDVEQMLPRKKE-IILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLES 495 (759)
Q Consensus 417 ~lRR~k~dv~~~LP~k~e-~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~ 495 (759)
..-|.... .+++.. ..+. . ...
T Consensus 197 ----------~~r~vpl~~~i~~~~------~~~~---~--------------~~~------------------------ 219 (674)
T PRK01172 197 ----------NFRPVPLKLGILYRK------RLIL---D--------------GYE------------------------ 219 (674)
T ss_pred ----------CCCCCCeEEEEEecC------eeee---c--------------ccc------------------------
Confidence 00111111 111100 0000 0 000
Q ss_pred hccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc----------------------
Q 004347 496 AFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK---------------------- 553 (759)
Q Consensus 496 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~---------------------- 553 (759)
..+. .+..++......++++|||++.......+...|...
T Consensus 220 -----------------~~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~ 281 (674)
T PRK01172 220 -----------------RSQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLN 281 (674)
T ss_pred -----------------cccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHH
Confidence 0000 012233343456889999999988776666665432
Q ss_pred ---CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCC---------CCCcchhhHHh
Q 004347 554 ---GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDS---------DWNPQMDLQAM 621 (759)
Q Consensus 554 ---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~---------~wnp~~~~Qa~ 621 (759)
...+..+||+++.++|..+.+.|.+ +.++ +|++|.+++.|+|+++ .+||++|. ++++..+.|++
T Consensus 282 ~~l~~gv~~~hagl~~~eR~~ve~~f~~--g~i~-VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~ 357 (674)
T PRK01172 282 EMLPHGVAFHHAGLSNEQRRFIEEMFRN--RYIK-VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMI 357 (674)
T ss_pred HHHhcCEEEecCCCCHHHHHHHHHHHHc--CCCe-EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHh
Confidence 1246778999999999999999997 4444 4999999999999996 57777664 45677889999
Q ss_pred hhhhhcCCCCceEEEEE
Q 004347 622 DRCHRIGQTKPVHVYRL 638 (759)
Q Consensus 622 gR~~RiGQ~k~V~Vyrl 638 (759)
||++|.|....-..+-+
T Consensus 358 GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 358 GRAGRPGYDQYGIGYIY 374 (674)
T ss_pred hcCCCCCCCCcceEEEE
Confidence 99999997665333333
No 68
>PRK00254 ski2-like helicase; Provisional
Probab=99.88 E-value=8.3e-21 Score=225.41 Aligned_cols=317 Identities=21% Similarity=0.188 Sum_probs=197.7
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC-Cc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-SV 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-~~ 264 (759)
..|+|+|.+++.-.+ ..+.+.|++.+||+|||+.+ ++++..+... .+++|+|+|.. ++.++.+++..|.. +.
T Consensus 22 ~~l~~~Q~~ai~~~~---~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~aLa~q~~~~~~~~~~~g~ 96 (720)
T PRK00254 22 EELYPPQAEALKSGV---LEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKALAEEKYREFKDWEKLGL 96 (720)
T ss_pred CCCCHHHHHHHHHHH---hCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHHHHHHHHHHhhcCC
Confidence 579999999997422 34889999999999999998 5666665543 36899999966 55778888887643 46
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH---HhhhhcCccEEEEcCcccccC--hhhHHHHHHhc
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR---KYLRHYNWKYLVVDEGHRLKN--PKCKLLKELKY 339 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~---~~l~~~~~~~lIvDEaH~ikn--~~s~~~~~l~~ 339 (759)
.+..++|....... +...++|+|+|++.+....+ .++. ++++|||||+|.+.. ....+...+..
T Consensus 97 ~v~~~~Gd~~~~~~---------~~~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE~H~l~~~~rg~~le~il~~ 165 (720)
T PRK00254 97 RVAMTTGDYDSTDE---------WLGKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADEIHLIGSYDRGATLEMILTH 165 (720)
T ss_pred EEEEEeCCCCCchh---------hhccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcCcCccCCccchHHHHHHHHh
Confidence 77888886543221 12467899999998755432 2333 468999999999964 33444445555
Q ss_pred CC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHh
Q 004347 340 IP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 418 (759)
Q Consensus 340 l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~l 418 (759)
+. ..+.++||||+- |..++...++ ...+.+ . .+|
T Consensus 166 l~~~~qiI~lSATl~--n~~~la~wl~---~~~~~~------~-------------------------------~rp--- 200 (720)
T PRK00254 166 MLGRAQILGLSATVG--NAEELAEWLN---AELVVS------D-------------------------------WRP--- 200 (720)
T ss_pred cCcCCcEEEEEccCC--CHHHHHHHhC---CccccC------C-------------------------------CCC---
Confidence 53 456799999973 3444433221 111000 0 000
Q ss_pred hhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhcc
Q 004347 419 RRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFS 498 (759)
Q Consensus 419 RR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 498 (759)
.|.+. .+++-... .+.. + . ...
T Consensus 201 ----------v~l~~-~~~~~~~~-----~~~~-----------------~-~-~~~----------------------- 222 (720)
T PRK00254 201 ----------VKLRK-GVFYQGFL-----FWED-----------------G-K-IER----------------------- 222 (720)
T ss_pred ----------Cccee-eEecCCee-----eccC-----------------c-c-hhc-----------------------
Confidence 11100 00000000 0000 0 0 000
Q ss_pred CCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHh--------------------------
Q 004347 499 DSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNE-------------------------- 552 (759)
Q Consensus 499 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~-------------------------- 552 (759)
+ ......++......+.++||||+.+.....+...|..
T Consensus 223 ----~------------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (720)
T PRK00254 223 ----F------------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPT 286 (720)
T ss_pred ----c------------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Confidence 0 0001112222233578899999988765443332211
Q ss_pred -------cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE-------eCCCCC-cchh
Q 004347 553 -------KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL-------YDSDWN-PQMD 617 (759)
Q Consensus 553 -------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~-------~D~~wn-p~~~ 617 (759)
....+..+||+++.++|..+.+.|+++ .++ +|++|.+++.|+|+++.+.||. |+.+.- ...+
T Consensus 287 ~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G--~i~-VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~ 363 (720)
T PRK00254 287 NEKLKKALRGGVAFHHAGLGRTERVLIEDAFREG--LIK-VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEI 363 (720)
T ss_pred cHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCC--CCe-EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHH
Confidence 123588899999999999999999974 454 5999999999999999888884 333333 3467
Q ss_pred hHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 618 LQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 618 ~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
.|++||++|.|....-.++-+++..
T Consensus 364 ~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 364 QQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred HHhhhccCCCCcCCCceEEEEecCc
Confidence 9999999999877665666666544
No 69
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.88 E-value=3.7e-21 Score=234.69 Aligned_cols=96 Identities=22% Similarity=0.269 Sum_probs=84.3
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcC---------------------------------ceEEEEeCCCCHHHHHHHHHH
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKG---------------------------------YEVCRIDGSVRLDERKRQIQD 575 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g---------------------------------~~~~~l~G~~~~~~R~~~i~~ 575 (759)
.+.++||||+.+...+.+...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46889999999999998888886531 124578899999999999999
Q ss_pred hhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhc
Q 004347 576 FNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRI 627 (759)
Q Consensus 576 F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 627 (759)
|+++ .++ +|++|.++++|||+..++.||+|++|.+...+.||+||++|.
T Consensus 323 fK~G--~Lr-vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSG--ELR-CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhC--Cce-EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9974 444 599999999999999999999999999999999999999985
No 70
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=4.7e-21 Score=205.76 Aligned_cols=317 Identities=21% Similarity=0.254 Sum_probs=208.8
Q ss_pred cccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCC----------CCCeEEEECCc-cHH
Q 004347 184 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNGL----------HGPYLVIAPLS-TLS 251 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~~----------~~~~LIV~P~s-ll~ 251 (759)
......+.|+|.-+++-+.. |++.+.+.+||+|||.. -|.++.+++..+. ....||++|++ ++.
T Consensus 91 ~~~~~~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~ 166 (482)
T KOG0335|consen 91 RSGYTKPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVD 166 (482)
T ss_pred cccccCCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhh
Confidence 33455789999999988865 88889999999999988 5677777776532 34589999988 557
Q ss_pred HHHHHHHHhCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccC
Q 004347 252 NWVNEISRFVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 252 ~W~~E~~~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn 328 (759)
|-.+|..+|.- .+...+.+|....+...+ .....++|+++|++.+..-+.. .+..-...++|+|||+++..
T Consensus 167 Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~------~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD 240 (482)
T KOG0335|consen 167 QIYNEARKFSYLSGMKSVVVYGGTDLGAQLR------FIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLD 240 (482)
T ss_pred HHHHHHHhhcccccceeeeeeCCcchhhhhh------hhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhh
Confidence 88888888863 344444444444433322 2336899999999998765421 22222345999999999865
Q ss_pred h---hhHHHHHHhcC-----CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHH
Q 004347 329 P---KCKLLKELKYI-----PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEK 400 (759)
Q Consensus 329 ~---~s~~~~~l~~l-----~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~ 400 (759)
. .-.+.+.+... ....-++.|||=- .+
T Consensus 241 ~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp----~~----------------------------------------- 275 (482)
T KOG0335|consen 241 EMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFP----KE----------------------------------------- 275 (482)
T ss_pred hccccccHHHHhcccCCCCccceeEEEEeccCC----hh-----------------------------------------
Confidence 2 11222222221 1222345555510 00
Q ss_pred HHHHHHHHHHHHhhhHHhh-hh---hhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHH
Q 004347 401 RRGQMVAKLHAILRPFLLR-RM---KSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKL 476 (759)
Q Consensus 401 ~~~~~~~~L~~il~p~~lR-R~---k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l 476 (759)
++.+...|+.- .+ ..-+...-..-...+++|.=+.
T Consensus 276 --------iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~--------------------------------- 314 (482)
T KOG0335|consen 276 --------IQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEME--------------------------------- 314 (482)
T ss_pred --------hhhhHHHHhhccceEEEEeeeccccccceeEeeeecchh---------------------------------
Confidence 00001111100 00 0001111111222333332222
Q ss_pred HHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHh---h----CCCcEEEEccchhHHHHHHHH
Q 004347 477 NNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLF---A----RNHKVLVFSQWTKILDIMEYY 549 (759)
Q Consensus 477 ~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~---~----~~~kvLIFsq~~~~ld~L~~~ 549 (759)
|-..|.++|.... . ..++++||+....+++.+..+
T Consensus 315 --------------------------------------kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~ 356 (482)
T KOG0335|consen 315 --------------------------------------KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAF 356 (482)
T ss_pred --------------------------------------hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHH
Confidence 2222222222211 0 135899999999999999999
Q ss_pred HHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCC
Q 004347 550 FNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQ 629 (759)
Q Consensus 550 L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ 629 (759)
|...|+++..|||.-++.+|.+.++.|..+. +. +|++|.++++|||++.+.+||+||.|-+-..|.||+||++|.|+
T Consensus 357 l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~--~p-vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn 433 (482)
T KOG0335|consen 357 LSSNGYPAKSIHGDRTQIEREQALNDFRNGK--AP-VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGN 433 (482)
T ss_pred HhcCCCCceeecchhhhhHHHHHHHHhhcCC--cc-eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCC
Confidence 9999999999999999999999999999744 44 59999999999999999999999999999999999999999999
Q ss_pred CCceEEEE
Q 004347 630 TKPVHVYR 637 (759)
Q Consensus 630 ~k~V~Vyr 637 (759)
.--.+.|.
T Consensus 434 ~G~atsf~ 441 (482)
T KOG0335|consen 434 GGRATSFF 441 (482)
T ss_pred CceeEEEe
Confidence 87755543
No 71
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.87 E-value=5.1e-22 Score=202.53 Aligned_cols=322 Identities=21% Similarity=0.322 Sum_probs=209.4
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHh-------CCCCCC-eEEEECCccHHHHHHHH-H
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKG-------NGLHGP-YLVIAPLSTLSNWVNEI-S 258 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~-------~~~~~~-~LIV~P~sll~~W~~E~-~ 258 (759)
.+.|.|..|+.-.++ |+..|--.-+|+|||++ ++.++...++ ....|| -|||||...+.....++ .
T Consensus 192 ~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 688999999998887 88877777799999987 2333222111 223355 49999998775544443 3
Q ss_pred Hh--------CCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh
Q 004347 259 RF--------VPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP 329 (759)
Q Consensus 259 ~~--------~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~ 329 (759)
.| .|.++..+..|.-.-+..+.. .....+|+|.|++.++.-+.+ .+..--..|+.+|||+|+-..
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~------v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDm 341 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDV------VRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDM 341 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHH------HhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhc
Confidence 33 355666555555444433221 124678999999998876533 222223469999999998642
Q ss_pred --hhHHHHHHhcCCCC-cEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHH
Q 004347 330 --KCKLLKELKYIPIG-NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMV 406 (759)
Q Consensus 330 --~s~~~~~l~~l~~~-~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 406 (759)
..........|+.. ..++.|||-- ..+ ..|..
T Consensus 342 GFEddir~iF~~FK~QRQTLLFSATMP----~KI---------------Q~FAk-------------------------- 376 (610)
T KOG0341|consen 342 GFEDDIRTIFSFFKGQRQTLLFSATMP----KKI---------------QNFAK-------------------------- 376 (610)
T ss_pred cchhhHHHHHHHHhhhhheeeeecccc----HHH---------------HHHHH--------------------------
Confidence 12222222233322 2355566520 000 00000
Q ss_pred HHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHh
Q 004347 407 AKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKN 486 (759)
Q Consensus 407 ~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~ 486 (759)
.++++| .+|.+ +++...++ +++..
T Consensus 377 ---SALVKP-------------------vtvNV-----------------------------GRAGAAsl-dViQe---- 400 (610)
T KOG0341|consen 377 ---SALVKP-------------------VTVNV-----------------------------GRAGAASL-DVIQE---- 400 (610)
T ss_pred ---hhcccc-------------------eEEec-----------------------------ccccccch-hHHHH----
Confidence 000111 11111 00000000 00000
Q ss_pred cCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCH
Q 004347 487 CNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRL 566 (759)
Q Consensus 487 ~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~ 566 (759)
-..+.+-.|+..|.+.|.+ ..-+|||||.-..-.|-|..||..+|+..+.|||+-.+
T Consensus 401 --------------------vEyVkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQ 457 (610)
T KOG0341|consen 401 --------------------VEYVKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQ 457 (610)
T ss_pred --------------------HHHHHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcch
Confidence 0124445677777776664 57789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHH
Q 004347 567 DERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEG 646 (759)
Q Consensus 567 ~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe 646 (759)
++|...|+.|+.+..+ +|++|++++-|+|+++..+||+||.|-.-..|.+||||++|-|.+-- .-.|+.+++-+.
T Consensus 458 edR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~es 532 (610)
T KOG0341|consen 458 EDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEES 532 (610)
T ss_pred hHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce--eeeeecccchHH
Confidence 9999999999986655 69999999999999999999999999999999999999999997653 334666666554
Q ss_pred HHH
Q 004347 647 RIL 649 (759)
Q Consensus 647 ~i~ 649 (759)
.++
T Consensus 533 vLl 535 (610)
T KOG0341|consen 533 VLL 535 (610)
T ss_pred HHH
Confidence 443
No 72
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=4.9e-22 Score=198.31 Aligned_cols=314 Identities=23% Similarity=0.312 Sum_probs=215.9
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCCCCCeEEEECCccH----HHHHHHHHHhC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNGLHGPYLVIAPLSTL----SNWVNEISRFV 261 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~~~~~~LIV~P~sll----~~W~~E~~~~~ 261 (759)
...+.|.|.+++.-.+. |++.+.-.--|.|||-. +|..+..+......--.+|++|+..+ +|-..++.++.
T Consensus 105 ~ekPSPiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~ 180 (459)
T KOG0326|consen 105 FEKPSPIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL 180 (459)
T ss_pred cCCCCCccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc
Confidence 34788999999998885 66655556699999976 55555555444344467999998765 66777888877
Q ss_pred CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhh-hhcCccEEEEcCcccccChh--hHHHHHHh
Q 004347 262 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYL-RHYNWKYLVVDEGHRLKNPK--CKLLKELK 338 (759)
Q Consensus 262 p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l-~~~~~~~lIvDEaH~ikn~~--s~~~~~l~ 338 (759)
.+.+.+..|...-|+.+-+ .....+++|.|++.+..-..+-. ...+...+|+|||+.+.... ..+-+.+.
T Consensus 181 -~i~vmvttGGT~lrDDI~R------l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~ 253 (459)
T KOG0326|consen 181 -GIKVMVTTGGTSLRDDIMR------LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLIS 253 (459)
T ss_pred -CeEEEEecCCcccccceee------ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHH
Confidence 4888888888777665433 23577899999999887664322 22345799999999987533 33444444
Q ss_pred cCC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 339 YIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 339 ~l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
.++ .+..++.|||- +. ....|...+- -+|+.
T Consensus 254 ~lP~~rQillySATF-P~------------------tVk~Fm~~~l-----------------------------~kPy~ 285 (459)
T KOG0326|consen 254 FLPKERQILLYSATF-PL------------------TVKGFMDRHL-----------------------------KKPYE 285 (459)
T ss_pred hCCccceeeEEeccc-ch------------------hHHHHHHHhc-----------------------------cCcce
Confidence 444 33345666661 00 0111211110 00110
Q ss_pred hhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 418 LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
+. +..+|..+-....|.
T Consensus 286 IN-----LM~eLtl~GvtQyYa---------------------------------------------------------- 302 (459)
T KOG0326|consen 286 IN-----LMEELTLKGVTQYYA---------------------------------------------------------- 302 (459)
T ss_pred ee-----hhhhhhhcchhhhee----------------------------------------------------------
Confidence 00 001111111111111
Q ss_pred cCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhh
Q 004347 498 SDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 577 (759)
Q Consensus 498 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 577 (759)
.++.+-|+-.|..++.++ .-...||||+++...+.|.......|+++..+|..|.++.|..++.+|+
T Consensus 303 -----------fV~e~qKvhCLntLfskL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr 369 (459)
T KOG0326|consen 303 -----------FVEERQKVHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFR 369 (459)
T ss_pred -----------eechhhhhhhHHHHHHHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhh
Confidence 123344677777777776 3456899999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEee
Q 004347 578 DVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLAT 640 (759)
Q Consensus 578 ~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~ 640 (759)
+ +.|+. |++|+..-+|||+++.+.||+||.|.|+..|++|+||.+|+|- .-....|++
T Consensus 370 ~--G~crn-LVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGh--lGlAInLit 427 (459)
T KOG0326|consen 370 N--GKCRN-LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH--LGLAINLIT 427 (459)
T ss_pred c--cccce-eeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCC--cceEEEEEe
Confidence 7 56665 9999999999999999999999999999999999999999994 323344554
No 73
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.86 E-value=5e-20 Score=213.26 Aligned_cols=106 Identities=22% Similarity=0.334 Sum_probs=87.9
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHH-----HHHHHhhc----cC----CCceEEEEeccccc
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERK-----RQIQDFND----VN----SSYRIFLLSTRAGG 594 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~-----~~i~~F~~----~~----~~~~v~LlsT~agg 594 (759)
..+.++||||+....++.|...|...++ ..+||.+++.+|. .++++|.. +. ..-..+||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 3568899999999999999999998877 8999999999999 78899975 21 01124699999999
Q ss_pred CCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCc--eEEEEE
Q 004347 595 LGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKP--VHVYRL 638 (759)
Q Consensus 595 ~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~--V~Vyrl 638 (759)
+|||+.. ++||+++.|+ ..|+||+||++|.|.... +.|+.+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999986 9999988775 789999999999998644 444433
No 74
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=3.1e-19 Score=208.72 Aligned_cols=368 Identities=15% Similarity=0.101 Sum_probs=205.4
Q ss_pred ccchhHHHHHHHHHHHhhc------CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhC
Q 004347 189 KLKSYQLKGVKWLISLWQN------GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFV 261 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~------~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~ 261 (759)
-+|+||..+|+-++..+.+ ..+|++.+.+|+|||++++.++..+.......++|||||.. |..||.++|..+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 4789999999999887654 35799999999999999999998887665667899999954 7799999999987
Q ss_pred CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcC----ccEEEEcCcccccChhhHHHHHH
Q 004347 262 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYN----WKYLVVDEGHRLKNPKCKLLKEL 337 (759)
Q Consensus 262 p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~----~~~lIvDEaH~ikn~~s~~~~~l 337 (759)
+... .-.++. ..+.... ......|+|+|++.+.......+.... ..+||+|||||... ....+.+
T Consensus 318 ~~~~--~~~~s~---~~L~~~l----~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l 386 (667)
T TIGR00348 318 KDCA--ERIESI---AELKRLL----EKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKNL 386 (667)
T ss_pred CCCC--cccCCH---HHHHHHH----hCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHHH
Confidence 5311 111222 2222111 113467999999999764333332222 23899999999753 2344455
Q ss_pred -hcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhH
Q 004347 338 -KYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPF 416 (759)
Q Consensus 338 -~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~ 416 (759)
..++...+++|||||....-..-+.. |...|..... .+
T Consensus 387 ~~~~p~a~~lGfTaTP~~~~d~~t~~~--------------f~~~fg~~i~---------------------------~Y 425 (667)
T TIGR00348 387 KKALKNASFFGFTGTPIFKKDRDTSLT--------------FAYVFGRYLH---------------------------RY 425 (667)
T ss_pred HhhCCCCcEEEEeCCCccccccccccc--------------ccCCCCCeEE---------------------------Ee
Confidence 46778899999999985421111111 1000000000 00
Q ss_pred HhhhhhhHHhhh-CCCceEEEEEe--cCCHHH-HHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhh
Q 004347 417 LLRRMKSDVEQM-LPRKKEIILYA--TMTEHQ-RNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDL 492 (759)
Q Consensus 417 ~lRR~k~dv~~~-LP~k~e~~v~~--~ls~~q-~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 492 (759)
.+. .-+... +.+.....+.+ .++... ...+......... .........+......+.....+|..
T Consensus 426 ~~~---~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~ 494 (667)
T TIGR00348 426 FIT---DAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPE--------RIREITKESLKEKLQKTKKILFNEDR 494 (667)
T ss_pred eHH---HHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhc--------cccHHHHHHHHHHHHHHHhhhcChHH
Confidence 000 001111 11111111111 111110 0111111100000 00000011111111122222222221
Q ss_pred hhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc-----CceEEEEeCCCCHH
Q 004347 493 LESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK-----GYEVCRIDGSVRLD 567 (759)
Q Consensus 493 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~l~G~~~~~ 567 (759)
+... .+ .++..+.......+.|.+|||.++..+..+...|... +...+.++|+...+
T Consensus 495 ~~~i-----------------a~-~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~ 556 (667)
T TIGR00348 495 LESI-----------------AK-DIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDD 556 (667)
T ss_pred HHHH-----------------HH-HHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccch
Confidence 1110 00 0111111111223589999999999888777776543 34556777765432
Q ss_pred ---------------------HHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhh
Q 004347 568 ---------------------ERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHR 626 (759)
Q Consensus 568 ---------------------~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~R 626 (759)
....++++|.++ +.+++ ||+++...+|+|.+.++++++.-+--+ ...+|++||+.|
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~i-lIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR 633 (667)
T TIGR00348 557 AEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPKL-LIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNR 633 (667)
T ss_pred hHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCceE-EEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhcc
Confidence 224789999863 44554 777799999999999999988776554 457999999999
Q ss_pred c-CCCCc-eEEEEEee
Q 004347 627 I-GQTKP-VHVYRLAT 640 (759)
Q Consensus 627 i-GQ~k~-V~Vyrli~ 640 (759)
+ +..|+ ..|+.|+.
T Consensus 634 ~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 634 IDGKDKTFGLIVDYRG 649 (667)
T ss_pred ccCCCCCCEEEEECcC
Confidence 5 54454 77777764
No 75
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.3e-19 Score=190.93 Aligned_cols=319 Identities=22% Similarity=0.303 Sum_probs=214.5
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHh----CCCCCCe-EEEECCccH-HHHHHHHHHhC
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKG----NGLHGPY-LVIAPLSTL-SNWVNEISRFV 261 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~----~~~~~~~-LIV~P~sll-~~W~~E~~~~~ 261 (759)
+.+|.|..+|.-.++ ++..|--.-+|+|||-.-+ ..+.++.. ....+|+ ||+||+..+ .|-..|.++|+
T Consensus 245 kptpiq~qalptals----grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccccc----cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 678888888877765 7777766779999997643 23333332 1234565 778897754 67778888885
Q ss_pred C--CceE-EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-HhhhhcCccEEEEcCcccccC--hhhHHHH
Q 004347 262 P--SVSA-IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-KYLRHYNWKYLVVDEGHRLKN--PKCKLLK 335 (759)
Q Consensus 262 p--~~~~-~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~-~~l~~~~~~~lIvDEaH~ikn--~~s~~~~ 335 (759)
. ++++ .+|.|.....+. ..+.....|||+|++.+..... +.....+..|||+|||.++-. ...+.-.
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~-------k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrS 393 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQS-------KELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRS 393 (731)
T ss_pred hhccceEEEeecCCcHHHHH-------HhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHH
Confidence 3 3444 455555443322 1122578899999999887652 233444568999999999964 3344444
Q ss_pred HHhcCCCCc-EEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHH-Hh
Q 004347 336 ELKYIPIGN-KLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHA-IL 413 (759)
Q Consensus 336 ~l~~l~~~~-rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-il 413 (759)
...+++..+ .|+.++| |.. .+.+|.+ +|
T Consensus 394 I~~hirpdrQtllFsaT--------------------------f~~------------------------kIe~lard~L 423 (731)
T KOG0339|consen 394 IKQHIRPDRQTLLFSAT--------------------------FKK------------------------KIEKLARDIL 423 (731)
T ss_pred HHhhcCCcceEEEeecc--------------------------chH------------------------HHHHHHHHHh
Confidence 555665554 4666766 211 1111111 11
Q ss_pred hhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhh
Q 004347 414 RPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLL 493 (759)
Q Consensus 414 ~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~ 493 (759)
. --+|++..+|.. -..-..++|++-.++
T Consensus 424 ~-dpVrvVqg~vge-an~dITQ~V~V~~s~-------------------------------------------------- 451 (731)
T KOG0339|consen 424 S-DPVRVVQGEVGE-ANEDITQTVSVCPSE-------------------------------------------------- 451 (731)
T ss_pred c-CCeeEEEeehhc-cccchhheeeeccCc--------------------------------------------------
Confidence 0 001222222211 011111222211111
Q ss_pred hhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHH
Q 004347 494 ESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQI 573 (759)
Q Consensus 494 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i 573 (759)
..|+.+|.+-|..... -.+||||..-....+-|...|..+|+++..+||++.+++|.+.+
T Consensus 452 -------------------~~Kl~wl~~~L~~f~S-~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 452 -------------------EKKLNWLLRHLVEFSS-EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred -------------------HHHHHHHHHHhhhhcc-CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHH
Confidence 2377777777776644 34899999988899999999999999999999999999999999
Q ss_pred HHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHH
Q 004347 574 QDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVE 645 (759)
Q Consensus 574 ~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvE 645 (759)
.+|...... +|+.|+++.+|+++....+||+||..-+...+.||+||.+|-|-+ -..|.|+|.-..+
T Consensus 512 s~fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 512 SKFKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HHHhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 999974444 699999999999999999999999999999999999999999976 5678899876443
No 76
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.85 E-value=8.4e-21 Score=204.63 Aligned_cols=312 Identities=16% Similarity=0.234 Sum_probs=212.6
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCCCCCeEEEECCccHHH-HHHHHHHhCC---
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNGLHGPYLVIAPLSTLSN-WVNEISRFVP--- 262 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~~~~~~LIV~P~sll~~-W~~E~~~~~p--- 262 (759)
....+.|..++..... +...|+-.-.|+|||+. +++.+..|-.+...-..+||+|+..+.- -..-|.+.+|
T Consensus 46 ~~ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~ 121 (980)
T KOG4284|consen 46 ALPTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFT 121 (980)
T ss_pred cCCCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhccccc
Confidence 3567899999988876 78889999999999987 4555566655555567899999998754 4455666666
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-HhhhhcCccEEEEcCcccccChhh---HHHHHHh
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-KYLRHYNWKYLVVDEGHRLKNPKC---KLLKELK 338 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~-~~l~~~~~~~lIvDEaH~ikn~~s---~~~~~l~ 338 (759)
++++-+|.|.........+. ...+|+|.|++.+...+. ..|.-.+.+++|+|||+.+....+ .+...+.
T Consensus 122 g~~csvfIGGT~~~~d~~rl-------k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~ 194 (980)
T KOG4284|consen 122 GARCSVFIGGTAHKLDLIRL-------KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIIN 194 (980)
T ss_pred CcceEEEecCchhhhhhhhh-------hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHH
Confidence 45666776655443332221 356799999999877652 356667789999999999865222 2223333
Q ss_pred cCC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 339 YIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 339 ~l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
.++ .+..++.|||=
T Consensus 195 slP~~rQv~a~SATY----------------------------------------------------------------- 209 (980)
T KOG4284|consen 195 SLPQIRQVAAFSATY----------------------------------------------------------------- 209 (980)
T ss_pred hcchhheeeEEeccC-----------------------------------------------------------------
Confidence 332 22334444441
Q ss_pred hhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 418 LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
...+... |.+....|.++.-..
T Consensus 210 --------------------------------p~nLdn~--------------------------Lsk~mrdp~lVr~n~ 231 (980)
T KOG4284|consen 210 --------------------------------PRNLDNL--------------------------LSKFMRDPALVRFNA 231 (980)
T ss_pred --------------------------------chhHHHH--------------------------HHHHhcccceeeccc
Confidence 1111111 111112222211111
Q ss_pred cCCCCCCch----------HHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHH
Q 004347 498 SDSCFYPPV----------EQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLD 567 (759)
Q Consensus 498 ~~~~~~~~~----------~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~ 567 (759)
++...+..- ...-..--|++.|.+++..+ .-...||||....-++-+..+|...|+++..|.|.|++.
T Consensus 232 ~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~ 309 (980)
T KOG4284|consen 232 DDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQK 309 (980)
T ss_pred CCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchh
Confidence 110000000 00000112777777777765 345689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEe
Q 004347 568 ERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLA 639 (759)
Q Consensus 568 ~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli 639 (759)
+|..+++.++. -.++ +|+||+..++|||-..++.||+.|+|-+-..|.+||||++|+|.. ...|-.+.
T Consensus 310 ~Rl~a~~~lr~--f~~r-ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~-G~aVT~~~ 377 (980)
T KOG4284|consen 310 DRLLAVDQLRA--FRVR-ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAH-GAAVTLLE 377 (980)
T ss_pred HHHHHHHHhhh--ceEE-EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhccccccc-ceeEEEec
Confidence 99999999986 4455 499999999999999999999999999999999999999999954 44444443
No 77
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=2.1e-20 Score=192.03 Aligned_cols=310 Identities=20% Similarity=0.277 Sum_probs=207.4
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHH--HHH---HH--HhCCCCCCeEEEECCccHHH-HHHHHHH
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIA--FLA---HL--KGNGLHGPYLVIAPLSTLSN-WVNEISR 259 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~--li~---~l--~~~~~~~~~LIV~P~sll~~-W~~E~~~ 259 (759)
.++.|.|-.+-.-++. |..+|....+|.|||+.-+. ++. .. ++....-.+||++|+.-|.. -.-|..+
T Consensus 241 qKPtPIqSQaWPI~LQ----G~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~k 316 (629)
T KOG0336|consen 241 QKPTPIQSQAWPILLQ----GIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKK 316 (629)
T ss_pred CCCCcchhcccceeec----CcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhH
Confidence 3788889877666654 99999999999999987431 111 11 12223345899999887754 4445555
Q ss_pred h--CCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH-HHhhhhcCccEEEEcCcccccC--hhhHHH
Q 004347 260 F--VPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA-RKYLRHYNWKYLVVDEGHRLKN--PKCKLL 334 (759)
Q Consensus 260 ~--~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~-~~~l~~~~~~~lIvDEaH~ikn--~~s~~~ 334 (759)
+ -....+++|.|.....+. . .....++++|.|+..+..-. ..++......|||+|||+++.. ..-++.
T Consensus 317 ysyng~ksvc~ygggnR~eqi-e------~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIr 389 (629)
T KOG0336|consen 317 YSYNGLKSVCVYGGGNRNEQI-E------DLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIR 389 (629)
T ss_pred hhhcCcceEEEecCCCchhHH-H------HHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHH
Confidence 4 233456666665543322 1 12357899999999876543 2344455678999999999974 567788
Q ss_pred HHHhcCCCCcEEEE-ecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 004347 335 KELKYIPIGNKLLL-TGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAIL 413 (759)
Q Consensus 335 ~~l~~l~~~~rllL-TgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il 413 (759)
+.|..++..+..+| |||-
T Consensus 390 killdiRPDRqtvmTSATW------------------------------------------------------------- 408 (629)
T KOG0336|consen 390 KILLDIRPDRQTVMTSATW------------------------------------------------------------- 408 (629)
T ss_pred HHhhhcCCcceeeeecccC-------------------------------------------------------------
Confidence 88888877766544 4552
Q ss_pred hhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhh
Q 004347 414 RPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLL 493 (759)
Q Consensus 414 ~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~ 493 (759)
|-.+||+..... |...++|+.--.. ++.|..
T Consensus 409 -P~~VrrLa~sY~-----Kep~~v~vGsLdL-----------------------------------------~a~~sV-- 439 (629)
T KOG0336|consen 409 -PEGVRRLAQSYL-----KEPMIVYVGSLDL-----------------------------------------VAVKSV-- 439 (629)
T ss_pred -chHHHHHHHHhh-----hCceEEEecccce-----------------------------------------eeeeee--
Confidence 111222221111 1111222110000 000000
Q ss_pred hhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHH
Q 004347 494 ESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQI 573 (759)
Q Consensus 494 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i 573 (759)
.... -+...+.|+..+..++..+ ...+|+|||+....++|.|..-|...|+..-.+||.-.+.+|+..+
T Consensus 440 ---------kQ~i-~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al 508 (629)
T KOG0336|consen 440 ---------KQNI-IVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMAL 508 (629)
T ss_pred ---------eeeE-EecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHH
Confidence 0000 0001123554444444443 5688999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCc
Q 004347 574 QDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKP 632 (759)
Q Consensus 574 ~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 632 (759)
+.|.+ +.++ +|++|+.+++|||++...||++||.|-|-..|.+|+||++|.|.+-.
T Consensus 509 ~~~ks--G~vr-ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 509 EDFKS--GEVR-ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred Hhhhc--CceE-EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 99998 4555 49999999999999999999999999999999999999999997654
No 78
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.85 E-value=7.8e-20 Score=209.65 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=100.9
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
...|+..+.+.+..+...+.++||||.+....+.+...|...|+++..++|.+...+|..+...|+. +. ++|+|+
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~--g~---VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK--GA---VTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC--Ce---EEEEcc
Confidence 3458999999998888889999999999999999999999999999999999998887766666654 23 699999
Q ss_pred cccCCCCCC---------CCCEEEEeCCCCCcchhhHHhhhhhhcCCCCc
Q 004347 592 AGGLGINLT---------AADTCILYDSDWNPQMDLQAMDRCHRIGQTKP 632 (759)
Q Consensus 592 agg~GINL~---------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 632 (759)
.+|+|+|+. +.++||.|++|-+. .+.|+.||++|.|..-.
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGS 529 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCcee
Confidence 999999999 88999999999665 45999999999997655
No 79
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.84 E-value=3.1e-19 Score=205.67 Aligned_cols=327 Identities=14% Similarity=0.148 Sum_probs=196.6
Q ss_pred cccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHH----------HHHHH---hCCCCCCeEEEECCccH
Q 004347 184 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAF----------LAHLK---GNGLHGPYLVIAPLSTL 250 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~l----------i~~l~---~~~~~~~~LIV~P~sll 250 (759)
.+....|++.|...=..++..+..+.+.|+..+||+|||.|.=.+ +..+. ..+..++++|++|...+
T Consensus 155 ~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreL 234 (675)
T PHA02653 155 PFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVAL 234 (675)
T ss_pred ccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHH
Confidence 345568888888877778887888999999999999999874222 22221 12344689999997654
Q ss_pred -HHHHHHHHHhC-----CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcc
Q 004347 251 -SNWVNEISRFV-----PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGH 324 (759)
Q Consensus 251 -~~W~~E~~~~~-----p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH 324 (759)
.+...++.+.. ++..+.+..|....... .. .....+++|.|..... ..| .++++||+||||
T Consensus 235 a~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~--~t-----~~k~~~Ilv~T~~L~l----~~L--~~v~~VVIDEaH 301 (675)
T PHA02653 235 VRLHSITLLKSLGFDEIDGSPISLKYGSIPDELI--NT-----NPKPYGLVFSTHKLTL----NKL--FDYGTVIIDEVH 301 (675)
T ss_pred HHHHHHHHHHHhCccccCCceEEEEECCcchHHh--hc-----ccCCCCEEEEeCcccc----ccc--ccCCEEEccccc
Confidence 55666666533 23444455554432110 10 1124589999865311 122 356899999999
Q ss_pred cccChhhHHHHHHhcCC--CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHH
Q 004347 325 RLKNPKCKLLKELKYIP--IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRR 402 (759)
Q Consensus 325 ~ikn~~s~~~~~l~~l~--~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~ 402 (759)
........+...++.+. .+..+++|||+-. .... |..+|..+
T Consensus 302 Er~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~------------------l~~~~~~p----------------- 345 (675)
T PHA02653 302 EHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDR------------------IKEFFPNP----------------- 345 (675)
T ss_pred cCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHH------------------HHHHhcCC-----------------
Confidence 98654444444443332 2357999999721 1222 21111100
Q ss_pred HHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHH
Q 004347 403 GQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQ 482 (759)
Q Consensus 403 ~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 482 (759)
..++ .. ...+.+..+..+.....+.+...|-..
T Consensus 346 -------------~~I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~~~------------------------------ 378 (675)
T PHA02653 346 -------------AFVH-IP---GGTLFPISEVYVKNKYNPKNKRAYIEE------------------------------ 378 (675)
T ss_pred -------------cEEE-eC---CCcCCCeEEEEeecCcccccchhhhHH------------------------------
Confidence 0000 00 000111111111111111111111000
Q ss_pred HHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHH-hhCCCcEEEEccchhHHHHHHHHHHhc--CceEEE
Q 004347 483 LRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARL-FARNHKVLVFSQWTKILDIMEYYFNEK--GYEVCR 559 (759)
Q Consensus 483 Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l-~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~ 559 (759)
.|...+ ..+... ...+..+|||++....++.+...|... ++.+..
T Consensus 379 -------------------------------~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~ 426 (675)
T PHA02653 379 -------------------------------EKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYI 426 (675)
T ss_pred -------------------------------HHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEe
Confidence 011111 111111 123568999999999999999999877 799999
Q ss_pred EeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeC---CCC---------CcchhhHHhhhhhhc
Q 004347 560 IDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYD---SDW---------NPQMDLQAMDRCHRI 627 (759)
Q Consensus 560 l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D---~~w---------np~~~~Qa~gR~~Ri 627 (759)
+||++++ +.+.+++|.. ++..+ +|+||+.+++||+++++++||.++ .|- +...+.||.||++|.
T Consensus 427 LHG~Lsq--~eq~l~~ff~-~gk~k-ILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~ 502 (675)
T PHA02653 427 IHGKVPN--IDEILEKVYS-SKNPS-IIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV 502 (675)
T ss_pred ccCCcCH--HHHHHHHHhc-cCcee-EEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC
Confidence 9999996 4577788742 23333 699999999999999999999998 232 566788999999997
Q ss_pred CCCCceEEEEEeeCCCHH
Q 004347 628 GQTKPVHVYRLATAQSVE 645 (759)
Q Consensus 628 GQ~k~V~Vyrli~~~TvE 645 (759)
++-.+|+|+++....
T Consensus 503 ---~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 503 ---SPGTYVYFYDLDLLK 517 (675)
T ss_pred ---CCCeEEEEECHHHhH
Confidence 568899999987753
No 80
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=2.4e-19 Score=207.60 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=109.5
Q ss_pred hhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEec
Q 004347 511 EQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLST 590 (759)
Q Consensus 511 ~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT 590 (759)
....|+..|.+.+......+.++||||.+....+.|...|...|+++..+||.+...++..+...+.. +. ++|+|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g~---VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--GA---VTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--Ce---EEEEc
Confidence 33469999999998877789999999999999999999999999999999999998777777666654 23 79999
Q ss_pred ccccCCCCC---CCCC-----EEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHH
Q 004347 591 RAGGLGINL---TAAD-----TCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKR 651 (759)
Q Consensus 591 ~agg~GINL---~~a~-----~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~ 651 (759)
+.+|+|+|+ +.+. +||+||.|-|+..|.|+.||++|.|..-... .|+ |.|+.++.+
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~--~~i---s~eD~l~~~ 547 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ--FFI---SLEDDLLKR 547 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE--EEE---cchHHHHHh
Confidence 999999999 5777 9999999999999999999999999775433 233 235555543
No 81
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.84 E-value=1.2e-19 Score=206.80 Aligned_cols=117 Identities=16% Similarity=0.188 Sum_probs=104.9
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
..|+..+.+.+.++...|..|||||.+....+.|..+|...|+++..++|. +.+|...+..|....+. ++|+|+.
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~---VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA---VTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce---EEEEecc
Confidence 358888888888888899999999999999999999999999999999998 66899999999763333 7999999
Q ss_pred ccCCCCCCC-------CCEEEEeCCCCCcchhhHHhhhhhhcCCCCceE
Q 004347 593 GGLGINLTA-------ADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVH 634 (759)
Q Consensus 593 gg~GINL~~-------a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 634 (759)
+|+|+|+.. .-+||+|+.|-|+..|.|+.||++|.|..-...
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 999999987 669999999999999999999999999876543
No 82
>PRK09401 reverse gyrase; Reviewed
Probab=99.84 E-value=5.4e-19 Score=215.36 Aligned_cols=296 Identities=20% Similarity=0.218 Sum_probs=189.9
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCC
Q 004347 185 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPS 263 (759)
Q Consensus 185 ~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~ 263 (759)
..|..++|+|..++..++. |.+.++..+||+|||..++.++..+... ..++|||+|+. ++.||...+.++...
T Consensus 76 ~~G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~~~--g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 76 KTGSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLAKK--GKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred hcCCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 3466899999999888775 8899999999999997555444444332 46799999977 557899999988653
Q ss_pred c--eEE-EE-eCC--hhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChh-------
Q 004347 264 V--SAI-IY-HGS--KKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPK------- 330 (759)
Q Consensus 264 ~--~~~-~~-~g~--~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~------- 330 (759)
. .+. ++ +++ ..++....... ..+.++|+|+|++.+.+.+ ..+....+++|||||||++....
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l----~~~~~~IlV~Tp~rL~~~~-~~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERL----KEGDFDILVTTSQFLSKNF-DELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHH----hcCCCCEEEECHHHHHHHH-HhccccccCEEEEEChHHhhhcccchhhHH
Confidence 2 332 22 332 12222211111 1246899999999998876 35666679999999999985311
Q ss_pred -------hHHHHHHhcCC-------------------------CCcEEEEecCCCCCCHHH-HH-hhhhhccCCCCCChH
Q 004347 331 -------CKLLKELKYIP-------------------------IGNKLLLTGTPLQNNLAE-LW-SLLHFILPDIFSSLE 376 (759)
Q Consensus 331 -------s~~~~~l~~l~-------------------------~~~rllLTgTPl~n~~~e-l~-sll~fl~p~~~~~~~ 376 (759)
..+...+..++ ....++.|||.-+..... ++ .++.|
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~---------- 294 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGF---------- 294 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceE----------
Confidence 11222222222 234567788764321111 10 00000
Q ss_pred HHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHH
Q 004347 377 EFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKT 456 (759)
Q Consensus 377 ~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~ 456 (759)
.. .+. ...+.......+.+.
T Consensus 295 ------~v----------------------------------~~~----~~~~rnI~~~yi~~~---------------- 314 (1176)
T PRK09401 295 ------EV----------------------------------GSP----VFYLRNIVDSYIVDE---------------- 314 (1176)
T ss_pred ------Ee----------------------------------cCc----ccccCCceEEEEEcc----------------
Confidence 00 000 000111111111110
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEE
Q 004347 457 LENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVF 536 (759)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIF 536 (759)
.|...|.+++..+ +..+|||
T Consensus 315 ---------------------------------------------------------~k~~~L~~ll~~l---~~~~LIF 334 (1176)
T PRK09401 315 ---------------------------------------------------------DSVEKLVELVKRL---GDGGLIF 334 (1176)
T ss_pred ---------------------------------------------------------cHHHHHHHHHHhc---CCCEEEE
Confidence 2444455555543 4679999
Q ss_pred ccchhH---HHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe---cccccCCCCCCC-CCEEEEeC
Q 004347 537 SQWTKI---LDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS---TRAGGLGINLTA-ADTCILYD 609 (759)
Q Consensus 537 sq~~~~---ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls---T~agg~GINL~~-a~~VI~~D 609 (759)
|+.... ++.|..+|...|+++..+||++ .+.+++|.+ +.++|++.+ |+++++|||++. .++|||||
T Consensus 335 v~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~--G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~ 407 (1176)
T PRK09401 335 VPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE--GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYG 407 (1176)
T ss_pred EecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC--CCCCEEEEecCCCCceeecCCCCcceeEEEEeC
Confidence 998776 9999999999999999999999 234699997 455564443 799999999998 89999999
Q ss_pred CCC------CcchhhHHhhhhhhcC
Q 004347 610 SDW------NPQMDLQAMDRCHRIG 628 (759)
Q Consensus 610 ~~w------np~~~~Qa~gR~~RiG 628 (759)
.|- ....+.+++||+.++-
T Consensus 408 vP~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 408 VPKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CCCEEEeccccccCHHHHHHHHhhc
Confidence 997 6777889999996543
No 83
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.83 E-value=3.6e-20 Score=207.51 Aligned_cols=351 Identities=16% Similarity=0.202 Sum_probs=227.3
Q ss_pred hcccccCCccchhHHHHHHHHHHHhhcCCC-eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC-CccHHHHHHHHH
Q 004347 181 LVSLLTGGKLKSYQLKGVKWLISLWQNGLN-GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP-LSTLSNWVNEIS 258 (759)
Q Consensus 181 ~~~~~~~~~LrpyQ~~gv~~l~~~~~~~~~-~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P-~sll~~W~~E~~ 258 (759)
..+......+|+||..+++.+.+.+.+|.+ .+|++.||+|||.+||++|..|+..+..+++|+++- ++++.|=..+|.
T Consensus 157 ~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 157 YIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred cCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHH
Confidence 345556778999999999999998887764 799999999999999999999999999999999999 667888888899
Q ss_pred HhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh------hhhcCccEEEEcCcccccChhhH
Q 004347 259 RFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY------LRHYNWKYLVVDEGHRLKNPKCK 332 (759)
Q Consensus 259 ~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~------l~~~~~~~lIvDEaH~ikn~~s~ 332 (759)
.|.|....+...... .....+.|+|+||..+....... +..-.||+||||||||- ...
T Consensus 237 ~~~P~~~~~n~i~~~-------------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~ 300 (875)
T COG4096 237 DFLPFGTKMNKIEDK-------------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYS 300 (875)
T ss_pred HhCCCccceeeeecc-------------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHh
Confidence 999987665543322 12236799999999988765221 22334899999999984 233
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 004347 333 LLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAI 412 (759)
Q Consensus 333 ~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i 412 (759)
.++.+..+-...+++|||||-...-..-+.+++ +.|....
T Consensus 301 ~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~Y----------------------- 340 (875)
T COG4096 301 EWSSILDYFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYAY----------------------- 340 (875)
T ss_pred hhHHHHHHHHHHHHhhccCcccccccccccccC-----------------CCcceee-----------------------
Confidence 333444444556677799996522111111111 1110000
Q ss_pred hhhHHhhhhhhHHhh-h-CCCceE-EEEEecCCH-------HHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHH
Q 004347 413 LRPFLLRRMKSDVEQ-M-LPRKKE-IILYATMTE-------HQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQ 482 (759)
Q Consensus 413 l~p~~lRR~k~dv~~-~-LP~k~e-~~v~~~ls~-------~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 482 (759)
-.+.-|.+ . .|++.. ..+.++... .+...+...+.
T Consensus 341 -------sleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~---------------------------- 385 (875)
T COG4096 341 -------SLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAID---------------------------- 385 (875)
T ss_pred -------cHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccC----------------------------
Confidence 00011111 1 222211 112221110 01111111000
Q ss_pred HHHhcCChhhhhhhccCCCCCCc--hHHHHhhccHHHHHHHHHHHHhhC---C---CcEEEEccchhHHHHHHHHHHhc-
Q 004347 483 LRKNCNHPDLLESAFSDSCFYPP--VEQIVEQCGKFRLLDRLLARLFAR---N---HKVLVFSQWTKILDIMEYYFNEK- 553 (759)
Q Consensus 483 Lrk~~~hp~l~~~~~~~~~~~~~--~~~l~~~s~K~~~L~~lL~~l~~~---~---~kvLIFsq~~~~ld~L~~~L~~~- 553 (759)
. +...+.. .+.-+-.-..-..+.+.+.....+ | .|.||||....+++.+...|...
T Consensus 386 ------~---------dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~y 450 (875)
T COG4096 386 ------E---------DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEY 450 (875)
T ss_pred ------c---------ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhC
Confidence 0 0000000 000000111223444444444333 2 59999999999999999998764
Q ss_pred ----CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhc--
Q 004347 554 ----GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRI-- 627 (759)
Q Consensus 554 ----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri-- 627 (759)
|-=++.|+|... +-+..|+.|.. +.....|.+|.+.+.+|||.+.|-.++++-.-.+-..+.|.+||.-|+
T Consensus 451 pe~~~~~a~~IT~d~~--~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 451 PEYNGRYAMKITGDAE--QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred ccccCceEEEEeccch--hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCc
Confidence 233567888877 45678899987 555566799999999999999999999999999999999999999996
Q ss_pred -----CCCCc-eEEEEEee
Q 004347 628 -----GQTKP-VHVYRLAT 640 (759)
Q Consensus 628 -----GQ~k~-V~Vyrli~ 640 (759)
||.|. ..|+.++-
T Consensus 528 ~~~~~~~dK~~F~ifDf~~ 546 (875)
T COG4096 528 DLGGPEQDKEFFTIFDFVD 546 (875)
T ss_pred cccCccccceeEEEEEhhh
Confidence 45566 77877763
No 84
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=2.9e-18 Score=194.68 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=107.0
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
...|+..|.+++..+...+..+||||++....+.|...|...|+++..|||.++ +|...+..|....+. ++|+|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 345899999999988777889999999999999999999999999999999865 566666666542333 799999
Q ss_pred cccCCCCCC---CCC-----EEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHH
Q 004347 592 AGGLGINLT---AAD-----TCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAF 653 (759)
Q Consensus 592 agg~GINL~---~a~-----~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~ 653 (759)
.+|+|+|+. .+. +||+||.|-|+..|.|++||++|.|..-.+ +.|++ .|+.++.+..
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s--~~~is---~eD~l~~~~~ 594 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY--EAILS---LEDDLLQSFL 594 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE--EEEec---hhHHHHHhhh
Confidence 999999998 444 999999999999999999999999966443 33333 3666665443
No 85
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.82 E-value=1.6e-18 Score=192.34 Aligned_cols=305 Identities=17% Similarity=0.235 Sum_probs=207.7
Q ss_pred CccchhHHHHHHHHHHHhhcC--CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhCC--
Q 004347 188 GKLKSYQLKGVKWLISLWQNG--LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVP-- 262 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~--~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p-- 262 (759)
-+|...|..++.-+..-.... .+-+|--++|+|||+.|+..+......| .-....+|+.++ .|....+.+|++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G--~Q~ALMAPTEILA~QH~~~~~~~l~~~ 338 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG--YQAALMAPTEILAEQHYESLRKWLEPL 338 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC--CeeEEeccHHHHHHHHHHHHHHHhhhc
Confidence 478899999998887644433 2348888899999999877766666654 578899999987 678888999987
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHh-cCC
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELK-YIP 341 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~-~l~ 341 (759)
++.+....|+...+.+ +........+..++||-|+..+.... ...+..++|+||=||+.-... ..|. +=.
T Consensus 339 ~i~V~lLtG~~kgk~r--~~~l~~l~~G~~~ivVGTHALiQd~V----~F~~LgLVIiDEQHRFGV~QR---~~L~~KG~ 409 (677)
T COG1200 339 GIRVALLTGSLKGKAR--KEILEQLASGEIDIVVGTHALIQDKV----EFHNLGLVIIDEQHRFGVHQR---LALREKGE 409 (677)
T ss_pred CCeEEEeecccchhHH--HHHHHHHhCCCCCEEEEcchhhhcce----eecceeEEEEeccccccHHHH---HHHHHhCC
Confidence 5678888887654432 12222334567899999999875443 334568999999999863221 2222 223
Q ss_pred -CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhh
Q 004347 342 -IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRR 420 (759)
Q Consensus 342 -~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR 420 (759)
.++.|.+||||++-.++=- .|++.
T Consensus 410 ~~Ph~LvMTATPIPRTLAlt----------~fgDl--------------------------------------------- 434 (677)
T COG1200 410 QNPHVLVMTATPIPRTLALT----------AFGDL--------------------------------------------- 434 (677)
T ss_pred CCCcEEEEeCCCchHHHHHH----------Hhccc---------------------------------------------
Confidence 6899999999998765421 00000
Q ss_pred hhhHHhhhCCCceEEEE-EecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccC
Q 004347 421 MKSDVEQMLPRKKEIIL-YATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSD 499 (759)
Q Consensus 421 ~k~dv~~~LP~k~e~~v-~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~ 499 (759)
.-.+.+++|+.+.-+. ++-....-..+|..+
T Consensus 435 -dvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i----------------------------------------------- 466 (677)
T COG1200 435 -DVSIIDELPPGRKPITTVVIPHERRPEVYERI----------------------------------------------- 466 (677)
T ss_pred -cchhhccCCCCCCceEEEEeccccHHHHHHHH-----------------------------------------------
Confidence 0012256887643222 221212222223222
Q ss_pred CCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhH--------HHHHHHHHHhc--CceEEEEeCCCCHHHH
Q 004347 500 SCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKI--------LDIMEYYFNEK--GYEVCRIDGSVRLDER 569 (759)
Q Consensus 500 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~--------ld~L~~~L~~~--g~~~~~l~G~~~~~~R 569 (759)
.+-...|+++.+-|.-+.. +..+...|... ++++..+||.|+.++.
T Consensus 467 ------------------------~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eK 522 (677)
T COG1200 467 ------------------------REEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEK 522 (677)
T ss_pred ------------------------HHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHH
Confidence 1122367777777766542 22333344422 6789999999999999
Q ss_pred HHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCC-CCcchhhHHhhhhhhcCCCCce
Q 004347 570 KRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSD-WNPQMDLQAMDRCHRIGQTKPV 633 (759)
Q Consensus 570 ~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V 633 (759)
.+++.+|+++..+ +|+||.+...|||+++|+.+|++|+. +--+..-|--||++|=+...-|
T Consensus 523 d~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 523 DAVMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred HHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 9999999985555 69999999999999999999999985 6777889999999996544433
No 86
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=7.9e-19 Score=179.23 Aligned_cols=318 Identities=19% Similarity=0.270 Sum_probs=200.1
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCCCCCeEEEECCccHHHHH----HHHHHhC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNGLHGPYLVIAPLSTLSNWV----NEISRFV 261 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~~~~~~LIV~P~sll~~W~----~E~~~~~ 261 (759)
..++...|..++..|+. ....|.|--...|+|||.. +++++...-..-...-.+-+||..-+.... .|..+|+
T Consensus 110 F~kPskIQe~aLPlll~--~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~ 187 (477)
T KOG0332|consen 110 FQKPSKIQETALPLLLA--EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT 187 (477)
T ss_pred cCCcchHHHhhcchhhc--CCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce
Confidence 34566788888888875 6667777778899999976 333333322222222356679988664433 3344454
Q ss_pred CCce-EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccChh---hHHHH
Q 004347 262 PSVS-AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKNPK---CKLLK 335 (759)
Q Consensus 262 p~~~-~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn~~---s~~~~ 335 (759)
.+. .+.+.|++..|. ..-.-+|+|-|++.+..-+.. .+.-...+++|+|||+.+-+.. -...+
T Consensus 188 -~ita~yair~sk~~rG----------~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~r 256 (477)
T KOG0332|consen 188 -ELTASYAIRGSKAKRG----------NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIR 256 (477)
T ss_pred -eeeEEEEecCcccccC----------CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchh
Confidence 222 334444432221 112457999999998876532 2333456899999999987644 22233
Q ss_pred HHhcCC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 004347 336 ELKYIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILR 414 (759)
Q Consensus 336 ~l~~l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~ 414 (759)
..+.++ ....++.|||=. .....|...+... -.
T Consensus 257 I~~~lP~~~QllLFSATf~-------------------e~V~~Fa~kivpn---------------------------~n 290 (477)
T KOG0332|consen 257 IMRSLPRNQQLLLFSATFV-------------------EKVAAFALKIVPN---------------------------AN 290 (477)
T ss_pred hhhhcCCcceEEeeechhH-------------------HHHHHHHHHhcCC---------------------------Cc
Confidence 333444 556678788720 0001111111000 00
Q ss_pred hHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhh
Q 004347 415 PFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLE 494 (759)
Q Consensus 415 p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~ 494 (759)
+.++||- ++ .|++.++..+.|.--
T Consensus 291 ~i~Lk~e--el--~L~~IkQlyv~C~~~---------------------------------------------------- 314 (477)
T KOG0332|consen 291 VIILKRE--EL--ALDNIKQLYVLCACR---------------------------------------------------- 314 (477)
T ss_pred eeeeehh--hc--cccchhhheeeccch----------------------------------------------------
Confidence 1111111 11 133333333322111
Q ss_pred hhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHH
Q 004347 495 SAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQ 574 (759)
Q Consensus 495 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 574 (759)
..|+++|.++..-+ .-...||||+...++..|...+...|+.+..+||.+...+|..+++
T Consensus 315 ------------------~~K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~ 374 (477)
T KOG0332|consen 315 ------------------DDKYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIID 374 (477)
T ss_pred ------------------hhHHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHH
Confidence 12566666633322 2346899999999999999999999999999999999999999999
Q ss_pred HhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCC------CcchhhHHhhhhhhcCCCCceEEEEEee-CCCH
Q 004347 575 DFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDW------NPQMDLQAMDRCHRIGQTKPVHVYRLAT-AQSV 644 (759)
Q Consensus 575 ~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~w------np~~~~Qa~gR~~RiGQ~k~V~Vyrli~-~~Tv 644 (759)
+|+.+... +||+|.+.++|||.+.++.||+||.|- .|..|+||+||++|+|.+- +-| .|+- .++.
T Consensus 375 ~Fr~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG-~a~-n~v~~~~s~ 446 (477)
T KOG0332|consen 375 RFREGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG-LAI-NLVDDKDSM 446 (477)
T ss_pred HHhcCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc-eEE-EeecccCcH
Confidence 99986555 699999999999999999999999984 6789999999999999543 333 3443 3443
No 87
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.81 E-value=6e-18 Score=184.35 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=71.5
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcC--ceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKG--YEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCI 606 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g--~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI 606 (759)
.+.++||||+....++.+...|...| +.+..++|.++..+|.+.. ... +|++|+++++|||+... .||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~---iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFD---ILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCC---EEEEecHHhcccCCCCc-eEE
Confidence 57899999999999999999998764 5788999999998887543 122 79999999999999864 666
Q ss_pred EeCCCCCcchhhHHhhhhh
Q 004347 607 LYDSDWNPQMDLQAMDRCH 625 (759)
Q Consensus 607 ~~D~~wnp~~~~Qa~gR~~ 625 (759)
++ |-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 66 678999999999985
No 88
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.80 E-value=1.3e-17 Score=197.44 Aligned_cols=331 Identities=21% Similarity=0.236 Sum_probs=222.8
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhC---C-
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFV---P- 262 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~---p- 262 (759)
.|++||.++++.+.+ |++.|+.-.||+|||..- +.++.++.. +...+.|+|-|+..| ....+.|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~-~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLR-DPSARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhh-CcCccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 499999999998876 899999999999999995 455555555 455689999997655 55777787774 4
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-----HhhhhcCccEEEEcCcccccC-hhhHHHHH
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-----KYLRHYNWKYLVVDEGHRLKN-PKCKLLKE 336 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~-----~~l~~~~~~~lIvDEaH~ikn-~~s~~~~~ 336 (759)
.+.+..|+|......... ...+.++|++|+|+|+-..+. -.+...++++|||||+|..+. ..|.+.-.
T Consensus 145 ~v~~~~y~Gdt~~~~r~~------~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~l 218 (851)
T COG1205 145 KVTFGRYTGDTPPEERRA------IIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALL 218 (851)
T ss_pred cceeeeecCCCChHHHHH------HHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHH
Confidence 567889999775433211 112578999999999865321 112233489999999999874 33333333
Q ss_pred HhcC-------C-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHH
Q 004347 337 LKYI-------P-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAK 408 (759)
Q Consensus 337 l~~l-------~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (759)
++++ . ....++.|||- .|+.|+..-+ |...|..+
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~--~np~e~~~~l-------------~~~~f~~~----------------------- 260 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATL--ANPGEFAEEL-------------FGRDFEVP----------------------- 260 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccc--cChHHHHHHh-------------cCCcceee-----------------------
Confidence 3333 2 34568888883 2333322111 00001000
Q ss_pred HHHHhhhHHhhhhhhHHh-hhCCCceE-EEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHh
Q 004347 409 LHAILRPFLLRRMKSDVE-QMLPRKKE-IILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKN 486 (759)
Q Consensus 409 L~~il~p~~lRR~k~dv~-~~LP~k~e-~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~ 486 (759)
+. ..-|.-.. .+++-+........ +
T Consensus 261 ----------------v~~~g~~~~~~~~~~~~p~~~~~~~~---~---------------------------------- 287 (851)
T COG1205 261 ----------------VDEDGSPRGLRYFVRREPPIRELAES---I---------------------------------- 287 (851)
T ss_pred ----------------ccCCCCCCCceEEEEeCCcchhhhhh---c----------------------------------
Confidence 10 11222212 22222221111100 0
Q ss_pred cCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHH----HHHHhcC----ceEE
Q 004347 487 CNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIME----YYFNEKG----YEVC 558 (759)
Q Consensus 487 ~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~----~~L~~~g----~~~~ 558 (759)
.-.+...+..++..+...|-++|+|+.+...+..+. ..+...+ ..+.
T Consensus 288 -------------------------r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~ 342 (851)
T COG1205 288 -------------------------RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVS 342 (851)
T ss_pred -------------------------ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhhee
Confidence 012455566677777788999999999999988886 3344444 6788
Q ss_pred EEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCC-CcchhhHHhhhhhhcCCCCceEEEE
Q 004347 559 RIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDW-NPQMDLQAMDRCHRIGQTKPVHVYR 637 (759)
Q Consensus 559 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~Vyr 637 (759)
.+.|++...+|.++...|+.++.. ++++|.|+-.||++...+.||.+..|- .-..+.|+.||++|-||.-. ++.
T Consensus 343 ~~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l--~~~ 417 (851)
T COG1205 343 TYRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESL--VLV 417 (851)
T ss_pred eccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCce--EEE
Confidence 999999999999999999986555 699999999999999999999999998 77899999999999995544 333
Q ss_pred EeeCCCHHHHHHHH
Q 004347 638 LATAQSVEGRILKR 651 (759)
Q Consensus 638 li~~~TvEe~i~~~ 651 (759)
..-.+-++..+...
T Consensus 418 v~~~~~~d~yy~~~ 431 (851)
T COG1205 418 VLRSDPLDSYYLRH 431 (851)
T ss_pred EeCCCccchhhhhC
Confidence 33366688877653
No 89
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.79 E-value=8.3e-18 Score=198.43 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=92.5
Q ss_pred CCcEEEEccchhHHHHHHHHHHh---cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEE
Q 004347 530 NHKVLVFSQWTKILDIMEYYFNE---KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCI 606 (759)
Q Consensus 530 ~~kvLIFsq~~~~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI 606 (759)
+..+|||++....++.+...|.. .++.++.+||+++.++|.++++.|.++ ..+ +|+||+.+++||+++++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G--~rk-VlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG--RRK-VVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC--CeE-EEEecchHhhcccccCceEEE
Confidence 56799999999999999998876 478999999999999999999999863 333 699999999999999999999
Q ss_pred EeCCC----CCcch--------------hhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 607 LYDSD----WNPQM--------------DLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 607 ~~D~~----wnp~~--------------~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
.++.+ +||.. +.||.||++|. ++=.+|+|+++..
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 99876 46655 67999999886 5778899998653
No 90
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.2e-17 Score=173.74 Aligned_cols=311 Identities=20% Similarity=0.244 Sum_probs=204.5
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhC-----CCCC-CeEEEECCccHH-HHHHHH
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGN-----GLHG-PYLVIAPLSTLS-NWVNEI 257 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~-----~~~~-~~LIV~P~sll~-~W~~E~ 257 (759)
...++.-.|..++..+++ |.+.+.-.-||+|||.+ +|.++..+... +..+ ..+|++|+..+. |-...+
T Consensus 38 G~ekpTlIQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~vi 113 (569)
T KOG0346|consen 38 GWEKPTLIQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVI 113 (569)
T ss_pred CcCCcchhhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHH
Confidence 344666789999999987 88888888899999998 67777776642 2223 469999988654 444444
Q ss_pred HH---hCC-CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-h-hhhcCccEEEEcCcccccChh-
Q 004347 258 SR---FVP-SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-Y-LRHYNWKYLVVDEGHRLKNPK- 330 (759)
Q Consensus 258 ~~---~~p-~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~-l~~~~~~~lIvDEaH~ikn~~- 330 (759)
.+ +|+ .++++-+..+..+-. .+ ......++|||+|+..+...+.. . ...-...++|+|||+-+....
T Consensus 114 ekL~~~c~k~lr~~nl~s~~sdsv-~~-----~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGY 187 (569)
T KOG0346|consen 114 EKLVEYCSKDLRAINLASSMSDSV-NS-----VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGY 187 (569)
T ss_pred HHHHHHHHHhhhhhhhhcccchHH-HH-----HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhccc
Confidence 44 454 344444432221111 01 11235789999999998877532 1 222346899999999886433
Q ss_pred -hHHHHHHhcCCCC-cEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHH
Q 004347 331 -CKLLKELKYIPIG-NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAK 408 (759)
Q Consensus 331 -s~~~~~l~~l~~~-~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (759)
-.+.+....++.. .-+++|||-- ..+..
T Consensus 188 eedlk~l~~~LPr~~Q~~LmSATl~--------------------------------------------------dDv~~ 217 (569)
T KOG0346|consen 188 EEDLKKLRSHLPRIYQCFLMSATLS--------------------------------------------------DDVQA 217 (569)
T ss_pred HHHHHHHHHhCCchhhheeehhhhh--------------------------------------------------hHHHH
Confidence 3344445555433 3377788731 22333
Q ss_pred HHHHh--hhHHhhhhhhHHhhhCCCc---eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHH
Q 004347 409 LHAIL--RPFLLRRMKSDVEQMLPRK---KEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQL 483 (759)
Q Consensus 409 L~~il--~p~~lRR~k~dv~~~LP~k---~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L 483 (759)
|..++ .|+++.-+- .++|.. ..+.|.|. +..
T Consensus 218 LKkL~l~nPviLkl~e----~el~~~dqL~Qy~v~cs--e~D-------------------------------------- 253 (569)
T KOG0346|consen 218 LKKLFLHNPVILKLTE----GELPNPDQLTQYQVKCS--EED-------------------------------------- 253 (569)
T ss_pred HHHHhccCCeEEEecc----ccCCCcccceEEEEEec--cch--------------------------------------
Confidence 33332 344433222 223321 22333332 111
Q ss_pred HHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCC
Q 004347 484 RKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGS 563 (759)
Q Consensus 484 rk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~ 563 (759)
|+..+..+++--+ -..|.|||.+.++..-.|.-+|..-|++.|.++|.
T Consensus 254 -------------------------------KflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNse 301 (569)
T KOG0346|consen 254 -------------------------------KFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSE 301 (569)
T ss_pred -------------------------------hHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhccc
Confidence 3333333333111 13689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCCCceEEEEecc--------------------------c---------ccCCCCCCCCCEEEEe
Q 004347 564 VRLDERKRQIQDFNDVNSSYRIFLLSTR--------------------------A---------GGLGINLTAADTCILY 608 (759)
Q Consensus 564 ~~~~~R~~~i~~F~~~~~~~~v~LlsT~--------------------------a---------gg~GINL~~a~~VI~~ 608 (759)
++...|..++++||. +-+. ++|+|+ + .++|||++.++.||+|
T Consensus 302 LP~NSR~Hii~QFNk--G~Yd-ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNF 378 (569)
T KOG0346|consen 302 LPANSRCHIIEQFNK--GLYD-IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNF 378 (569)
T ss_pred ccccchhhHHHHhhC--ccee-EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeec
Confidence 999999999999997 3344 477776 1 2479999999999999
Q ss_pred CCCCCcchhhHHhhhhhhcCCCCceEE
Q 004347 609 DSDWNPQMDLQAMDRCHRIGQTKPVHV 635 (759)
Q Consensus 609 D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 635 (759)
|.|-++..|+||+||+.|-|.+-.+.-
T Consensus 379 D~P~t~~sYIHRvGRTaRg~n~GtalS 405 (569)
T KOG0346|consen 379 DFPETVTSYIHRVGRTARGNNKGTALS 405 (569)
T ss_pred CCCCchHHHHHhccccccCCCCCceEE
Confidence 999999999999999999987665443
No 91
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=178.42 Aligned_cols=318 Identities=21% Similarity=0.253 Sum_probs=212.3
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCCCCCeEEEECCccHHHHH-HHHHHhCC--
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGLHGPYLVIAPLSTLSNWV-NEISRFVP-- 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~~~~~~~LIV~P~sll~~W~-~E~~~~~p-- 262 (759)
...|.|.|.-+|..-+ -+|.|-++...|++|||+.+ +|-+..+... .+++|.++|...+.|.. ++|.+-+.
T Consensus 214 ~~eLlPVQ~laVe~GL---LeG~nllVVSaTasGKTLIgElAGi~~~l~~--g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 214 IEELLPVQVLAVEAGL---LEGENLLVVSATASGKTLIGELAGIPRLLSG--GKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred cceecchhhhhhhhcc---ccCCceEEEeccCCCcchHHHhhCcHHHHhC--CCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 3579999999997654 45889999999999999874 4555555553 47999999988887654 45655432
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccCh--hh---HHHHHH
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNP--KC---KLLKEL 337 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~--~s---~~~~~l 337 (759)
.+.+-+-.|...-+.. .....-....+.||||.||+-+---++.--.--+...|||||.|.+... .. .+...|
T Consensus 289 glkvairVG~srIk~~--~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RL 366 (830)
T COG1202 289 GLKVAIRVGMSRIKTR--EEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRL 366 (830)
T ss_pred cceEEEEechhhhccc--CCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHH
Confidence 3455555665543321 0011223345789999999976333221111124579999999999752 22 233444
Q ss_pred hcC-CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhH
Q 004347 338 KYI-PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPF 416 (759)
Q Consensus 338 ~~l-~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~ 416 (759)
+.+ +....|.||||- +|+.|+..-|+.-..
T Consensus 367 r~l~~~AQ~i~LSATV--gNp~elA~~l~a~lV----------------------------------------------- 397 (830)
T COG1202 367 RYLFPGAQFIYLSATV--GNPEELAKKLGAKLV----------------------------------------------- 397 (830)
T ss_pred HHhCCCCeEEEEEeec--CChHHHHHHhCCeeE-----------------------------------------------
Confidence 444 456789999994 567776654432100
Q ss_pred HhhhhhhHHhhhCCCc-eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhh
Q 004347 417 LLRRMKSDVEQMLPRK-KEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLES 495 (759)
Q Consensus 417 ~lRR~k~dv~~~LP~k-~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~ 495 (759)
.-..-|-. ..+.++|.=...
T Consensus 398 --------~y~~RPVplErHlvf~~~e~e--------------------------------------------------- 418 (830)
T COG1202 398 --------LYDERPVPLERHLVFARNESE--------------------------------------------------- 418 (830)
T ss_pred --------eecCCCCChhHeeeeecCchH---------------------------------------------------
Confidence 00112211 223343322211
Q ss_pred hccCCCCCCchHHHHhhccHHHHHHHHHHHHh----hC--CCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHH
Q 004347 496 AFSDSCFYPPVEQIVEQCGKFRLLDRLLARLF----AR--NHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDER 569 (759)
Q Consensus 496 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~----~~--~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R 569 (759)
|...+.++.+.-. .. ...+|||+.++.-...|.++|..+|++...+|++++..+|
T Consensus 419 -------------------K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eR 479 (830)
T COG1202 419 -------------------KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKER 479 (830)
T ss_pred -------------------HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHH
Confidence 2222222222111 11 2469999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE----eCCCC-CcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 570 KRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL----YDSDW-NPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 570 ~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~----~D~~w-np~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
+.+-..|.+.. +. .+++|.|.|-|+|+++. .||+ +...| +|+.+.|..||++|.|=...-.||-++-.|
T Consensus 480 k~vE~~F~~q~--l~-~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 480 KSVERAFAAQE--LA-AVVTTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHhcCC--cc-eEeehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999744 33 49999999999999954 4554 45555 999999999999999988878888887654
No 92
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=2.4e-18 Score=186.06 Aligned_cols=319 Identities=17% Similarity=0.205 Sum_probs=204.1
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCC----C-CCCeEEEECCcc-HHHHHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNG----L-HGPYLVIAPLST-LSNWVNEISR 259 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~----~-~~~~LIV~P~sl-l~~W~~E~~~ 259 (759)
...+.|.|..++..++. +.+++-+..+|+|||+. .+.++.+|.... . .-..+|+.|... ..|-.+|..+
T Consensus 156 F~~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k 231 (593)
T KOG0344|consen 156 FDEPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRK 231 (593)
T ss_pred CCCCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHh
Confidence 34678999999999987 88999999999999988 566667776532 2 236899999764 5677888888
Q ss_pred hC--CC--ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh---hhhcCccEEEEcCcccccChhh-
Q 004347 260 FV--PS--VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY---LRHYNWKYLVVDEGHRLKNPKC- 331 (759)
Q Consensus 260 ~~--p~--~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~---l~~~~~~~lIvDEaH~ikn~~s- 331 (759)
+. +. ..+..+..+...... ........++++|.|+..+...+..- +.-.+..++|+|||+++.++.+
T Consensus 232 ~~~~~~t~~~a~~~~~~~~~~qk-----~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f 306 (593)
T KOG0344|consen 232 YSIDEGTSLRAAQFSKPAYPSQK-----PAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFF 306 (593)
T ss_pred cCCCCCCchhhhhcccccchhhc-----cchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhH
Confidence 76 32 122222222111110 00111136789999999877665221 2344567899999999987611
Q ss_pred --HHHHHHhcCCCC--cEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHH
Q 004347 332 --KLLKELKYIPIG--NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVA 407 (759)
Q Consensus 332 --~~~~~l~~l~~~--~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (759)
++...+....+. ++=++|||- | ..++
T Consensus 307 ~~Qla~I~sac~s~~i~~a~FSat~----------------~----------------------------------~~VE 336 (593)
T KOG0344|consen 307 VEQLADIYSACQSPDIRVALFSATI----------------S----------------------------------VYVE 336 (593)
T ss_pred HHHHHHHHHHhcCcchhhhhhhccc----------------c----------------------------------HHHH
Confidence 111111111111 111111110 0 0011
Q ss_pred HHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhc
Q 004347 408 KLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNC 487 (759)
Q Consensus 408 ~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~ 487 (759)
++..++.. + ...+.+...+.+.. .+ . ..+. .|
T Consensus 337 E~~~~i~~--------~---------~~~vivg~~~sa~~---~V-----~----------------------Qelv-F~ 368 (593)
T KOG0344|consen 337 EWAELIKS--------D---------LKRVIVGLRNSANE---TV-----D----------------------QELV-FC 368 (593)
T ss_pred HHHHHhhc--------c---------ceeEEEecchhHhh---hh-----h----------------------hhhe-ee
Confidence 11111100 0 01122222222100 00 0 0000 00
Q ss_pred CChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHH-HhcCceEEEEeCCCCH
Q 004347 488 NHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYF-NEKGYEVCRIDGSVRL 566 (759)
Q Consensus 488 ~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L-~~~g~~~~~l~G~~~~ 566 (759)
...-+|+..+.+++.... .-.+|||.|+..-...|...| ...++.+..+||..++
T Consensus 369 ----------------------gse~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~ 424 (593)
T KOG0344|consen 369 ----------------------GSEKGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQ 424 (593)
T ss_pred ----------------------ecchhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccch
Confidence 012357788888887653 356999999999999999999 6779999999999999
Q ss_pred HHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeC
Q 004347 567 DERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA 641 (759)
Q Consensus 567 ~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 641 (759)
.+|.+.+++|+. +.+.| |++|+..++|||+.+++.||+||.|-.-..|++|+||++|.|+.. +.|.|++.
T Consensus 425 ~qrde~~~~FR~--g~Iwv-LicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g--~Aitfytd 494 (593)
T KOG0344|consen 425 KQRDETMERFRI--GKIWV-LICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSG--KAITFYTD 494 (593)
T ss_pred hHHHHHHHHHhc--cCeeE-EEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCc--ceEEEecc
Confidence 999999999998 56665 999999999999999999999999999999999999999999764 45555655
No 93
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.77 E-value=2.3e-17 Score=201.50 Aligned_cols=132 Identities=20% Similarity=0.244 Sum_probs=94.1
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-HHHHHHHHHHhCCC
Q 004347 185 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRFVPS 263 (759)
Q Consensus 185 ~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~ 263 (759)
..+..++|+|..++..++. |.+.++..+||+|||..++.++..+... ..++|||+|+.. ..|+.+.+.+++..
T Consensus 74 ~~g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~~--g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 74 AVGSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAKK--GKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred hcCCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 3456899999999988875 8899999999999998666655555443 357999999775 57788888888753
Q ss_pred --ce---EEEEeCChhHHH--HHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC
Q 004347 264 --VS---AIIYHGSKKERD--EIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 264 --~~---~~~~~g~~~~r~--~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn 328 (759)
+. +..|+|...... ..... ...+.++|+|+|++.+...... +.. +++++||||||++..
T Consensus 148 ~~i~~~~i~~~~Gg~~~~e~~~~~~~----l~~~~~dIlV~Tp~rL~~~~~~-l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 148 AGVGTVNIGAYHSRLPTKEKKEFMER----IENGDFDILITTTMFLSKNYDE-LGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred cCCceeeeeeecCCCCHHHHHHHHHH----HhcCCCCEEEECHHHHHHHHHH-hcC-CCCEEEEeChHhhhh
Confidence 22 234666543222 11111 1124689999999998876533 333 799999999999864
No 94
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.77 E-value=1.4e-16 Score=186.49 Aligned_cols=155 Identities=17% Similarity=0.126 Sum_probs=105.1
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCCce
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVS 265 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~ 265 (759)
...|+++|.+++..+...+ .+...+|...||+|||...+.++......| +.+||++|.. +..||.+.|.++++ ..
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g--~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG--KQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC--CeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 3479999999999987632 345689999999999999887776666553 5799999966 56889999998774 56
Q ss_pred EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC--hhh------HHHHHH
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN--PKC------KLLKEL 337 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn--~~s------~~~~~l 337 (759)
+.+++|........... .....+..+|||+|+..+. +...++.+|||||+|...- ... .+....
T Consensus 218 v~~~~s~~s~~~r~~~~--~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEW--RKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHH--HHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHH
Confidence 77777754332221110 0112246789999987542 2234578999999997642 111 111112
Q ss_pred hcCCCCcEEEEecCCC
Q 004347 338 KYIPIGNKLLLTGTPL 353 (759)
Q Consensus 338 ~~l~~~~rllLTgTPl 353 (759)
........+++||||.
T Consensus 290 a~~~~~~~il~SATps 305 (679)
T PRK05580 290 AKLENIPVVLGSATPS 305 (679)
T ss_pred hhccCCCEEEEcCCCC
Confidence 2335567899999994
No 95
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.77 E-value=4.3e-17 Score=192.85 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=92.2
Q ss_pred CCCcEEEEccchhHHHHHHHHHHh---cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNE---KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTC 605 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~V 605 (759)
.+..+|||++....++.+...|.. .++.++.+||+++.++|.+.+..|.++ . +-+|+||+.+.+||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G--~-rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG--R-RKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC--C-eEEEEecchHHhcccccCceEE
Confidence 357899999999999999999986 578899999999999999999999763 3 3369999999999999999999
Q ss_pred EEeCCC----CCcc--------------hhhHHhhhhhhcCCCCceEEEEEeeCCCH
Q 004347 606 ILYDSD----WNPQ--------------MDLQAMDRCHRIGQTKPVHVYRLATAQSV 644 (759)
Q Consensus 606 I~~D~~----wnp~--------------~~~Qa~gR~~RiGQ~k~V~Vyrli~~~Tv 644 (759)
|.++.+ |+|. .+.||.||++|. .+-.+|||+++...
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 997765 3333 478888888886 47889999986643
No 96
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.77 E-value=1.7e-17 Score=193.78 Aligned_cols=309 Identities=22% Similarity=0.161 Sum_probs=192.4
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC-CceE
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-SVSA 266 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-~~~~ 266 (759)
.|.|.|+.+|.-.+. . +.|.|++.+||+|||+.|...|..-...+ .++++.|||.. +...-.++|.+|-. ++++
T Consensus 31 el~~~qq~av~~~~~--~-~~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~Ek~~~~~~~~~~GirV 106 (766)
T COG1204 31 ELFNPQQEAVEKGLL--S-DENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEEKYEEFSRLEELGIRV 106 (766)
T ss_pred HhhHHHHHHhhcccc--C-CCcEEEEcCCCCchHHHHHHHHHHHHHhc-CCcEEEEeChHHHHHHHHHHhhhHHhcCCEE
Confidence 899999999965553 2 79999999999999999876665544433 57999999955 55667777874432 6899
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhh-hhcCccEEEEcCcccccCh-h-----hHHHHHHhc
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYL-RHYNWKYLVVDEGHRLKNP-K-----CKLLKELKY 339 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l-~~~~~~~lIvDEaH~ikn~-~-----s~~~~~l~~ 339 (759)
.+++|+...... ....++|+||||+.+-.-.++.- --...++|||||+|.+... . +-..+....
T Consensus 107 ~~~TgD~~~~~~---------~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~ 177 (766)
T COG1204 107 GISTGDYDLDDE---------RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRL 177 (766)
T ss_pred EEecCCcccchh---------hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhh
Confidence 999998865432 12578999999998754433211 1124589999999999765 2 223333322
Q ss_pred CCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 004347 340 IPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLR 419 (759)
Q Consensus 340 l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lR 419 (759)
-..-+.++||||- .|..|+...|+- ..+.+...|..|+
T Consensus 178 ~~~~rivgLSATl--pN~~evA~wL~a---~~~~~~~rp~~l~------------------------------------- 215 (766)
T COG1204 178 NELIRIVGLSATL--PNAEEVADWLNA---KLVESDWRPVPLR------------------------------------- 215 (766)
T ss_pred CcceEEEEEeeec--CCHHHHHHHhCC---cccccCCCCcccc-------------------------------------
Confidence 2335679999993 244443332221 1110000011110
Q ss_pred hhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccC
Q 004347 420 RMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSD 499 (759)
Q Consensus 420 R~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~ 499 (759)
|. .|.. ..+....-...
T Consensus 216 ~~-------v~~~-~~~~~~~~~~k------------------------------------------------------- 232 (766)
T COG1204 216 RG-------VPYV-GAFLGADGKKK------------------------------------------------------- 232 (766)
T ss_pred cC-------Cccc-eEEEEecCccc-------------------------------------------------------
Confidence 00 1111 11111100000
Q ss_pred CCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHh---------------------------
Q 004347 500 SCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNE--------------------------- 552 (759)
Q Consensus 500 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~--------------------------- 552 (759)
.....+...+..++....+.|+.+|||++++.........|..
T Consensus 233 ----------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 302 (766)
T COG1204 233 ----------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETP 302 (766)
T ss_pred ----------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhcccccccccccccc
Confidence 0000122333444455556788899999887754433333331
Q ss_pred ----------cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE-----eC-----CCC
Q 004347 553 ----------KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL-----YD-----SDW 612 (759)
Q Consensus 553 ----------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~-----~D-----~~w 612 (759)
.-..++..|.+++.++|+-+-+.|+. +.++| |+||...+.|+||++ ++||+ || .+-
T Consensus 303 ~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~--g~ikV-lv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i 378 (766)
T COG1204 303 TSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK--GKIKV-LVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDI 378 (766)
T ss_pred ccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc--CCceE-EEechHHhhhcCCcc-eEEEEeeeEEEcCCCCeEEC
Confidence 01125567889999999999999997 55655 999999999999994 55555 55 345
Q ss_pred CcchhhHHhhhhhhcCC
Q 004347 613 NPQMDLQAMDRCHRIGQ 629 (759)
Q Consensus 613 np~~~~Qa~gR~~RiGQ 629 (759)
++..+.|..||++|.|=
T Consensus 379 ~~~dv~QM~GRAGRPg~ 395 (766)
T COG1204 379 PVLDVLQMAGRAGRPGY 395 (766)
T ss_pred chhhHhhccCcCCCCCc
Confidence 67788999999999984
No 97
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.77 E-value=9.5e-18 Score=192.38 Aligned_cols=314 Identities=22% Similarity=0.293 Sum_probs=209.4
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhCC----CCCC-eEEEECCccH-HH---HHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNG----LHGP-YLVIAPLSTL-SN---WVNE 256 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~~----~~~~-~LIV~P~sll-~~---W~~E 256 (759)
..+++|.|..++..++. |+.+|....+|+|||+.- +.++.+..... ..|| .||+||+.-+ .| |.+-
T Consensus 385 y~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~k 460 (997)
T KOG0334|consen 385 YEKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRK 460 (997)
T ss_pred CCCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 45889999999999887 999999999999999985 55566655321 1256 5999998855 34 4444
Q ss_pred HHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH----HhhhhcCccEEEEcCcccccC--hh
Q 004347 257 ISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR----KYLRHYNWKYLVVDEGHRLKN--PK 330 (759)
Q Consensus 257 ~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~----~~l~~~~~~~lIvDEaH~ikn--~~ 330 (759)
|.+......+.+|.|+......-..+ ....|+|+|++.++.-+. ....-....+||+|||+++-. ..
T Consensus 461 f~k~l~ir~v~vygg~~~~~qiaelk-------Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfe 533 (997)
T KOG0334|consen 461 FLKLLGIRVVCVYGGSGISQQIAELK-------RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFE 533 (997)
T ss_pred HHhhcCceEEEecCCccHHHHHHHHh-------cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccC
Confidence 54444445566777776655443222 347899999988765431 122333456999999999742 11
Q ss_pred hHHHHHHhcCCCCcE-EEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 004347 331 CKLLKELKYIPIGNK-LLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKL 409 (759)
Q Consensus 331 s~~~~~l~~l~~~~r-llLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L 409 (759)
-+.++.+..++..+- ++ |...|
T Consensus 534 Pq~~~Ii~nlrpdrQtvl------------------------------fSatf--------------------------- 556 (997)
T KOG0334|consen 534 PQITRILQNLRPDRQTVL------------------------------FSATF--------------------------- 556 (997)
T ss_pred cccchHHhhcchhhhhhh------------------------------hhhhh---------------------------
Confidence 111112222211100 11 11111
Q ss_pred HHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCC
Q 004347 410 HAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNH 489 (759)
Q Consensus 410 ~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 489 (759)
|-.+.-+..-|.. +| . +.++ .. +..
T Consensus 557 -----pr~m~~la~~vl~-~P-v-eiiv--~~--------~sv------------------------------------- 581 (997)
T KOG0334|consen 557 -----PRSMEALARKVLK-KP-V-EIIV--GG--------RSV------------------------------------- 581 (997)
T ss_pred -----hHHHHHHHHHhhc-CC-e-eEEE--cc--------cee-------------------------------------
Confidence 0111112222222 22 1 1111 00 000
Q ss_pred hhhhhhhccCCCCCCchHHH---Hh-hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCC
Q 004347 490 PDLLESAFSDSCFYPPVEQI---VE-QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 565 (759)
Q Consensus 490 p~l~~~~~~~~~~~~~~~~l---~~-~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~ 565 (759)
....+.+. +. ...|+..|.++|..... ..++||||+....+|.|.+-|...|+++..+||+.+
T Consensus 582 ------------V~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~ 648 (997)
T KOG0334|consen 582 ------------VCKEVTQVVRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVD 648 (997)
T ss_pred ------------EeccceEEEEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCc
Confidence 00001111 11 24599999999998765 778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeC
Q 004347 566 LDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA 641 (759)
Q Consensus 566 ~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 641 (759)
+.+|...+..|+++..+ +|++|.+++.||+......||+||.|--...|.+|.||++|.|.+- ..|.|++.
T Consensus 649 q~dR~sti~dfK~~~~~---LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 649 QHDRSSTIEDFKNGVVN---LLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hHHHHhHHHHHhccCce---EEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 99999999999974333 7999999999999999999999999988888999999999999776 55666666
No 98
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.76 E-value=1.3e-17 Score=195.99 Aligned_cols=317 Identities=16% Similarity=0.176 Sum_probs=221.4
Q ss_pred cccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhC-C
Q 004347 184 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFV-P 262 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~-p 262 (759)
.+.....||-|+++|+..+. |..+++-..||.||.+ +..|...-..+-+|||.| +++=..+++.... .
T Consensus 259 ~Fg~~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSL-----CYQlPA~l~~gitvVISP--L~SLm~DQv~~L~~~ 327 (941)
T KOG0351|consen 259 VFGHKGFRPNQLEAINATLS----GKDCFVLMPTGGGKSL-----CYQLPALLLGGVTVVISP--LISLMQDQVTHLSKK 327 (941)
T ss_pred HhccccCChhHHHHHHHHHc----CCceEEEeecCCceee-----EeeccccccCCceEEecc--HHHHHHHHHHhhhhc
Confidence 34456899999999996655 9999999999999994 444444333457899999 3344444555442 2
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH--HHh-hhhcC---ccEEEEcCcccccC-------h
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA--RKY-LRHYN---WKYLVVDEGHRLKN-------P 329 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~--~~~-l~~~~---~~~lIvDEaH~ikn-------~ 329 (759)
++....+++.........-...-....+.+.|+..|++.+.... ... ..... ..++||||||.... .
T Consensus 328 ~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~ 407 (941)
T KOG0351|consen 328 GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPS 407 (941)
T ss_pred CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHH
Confidence 45666666655443221111111112247889999999987542 111 22222 57999999998753 3
Q ss_pred hhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 004347 330 KCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKL 409 (759)
Q Consensus 330 ~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L 409 (759)
...+.....++.....|+||||--..-..++...|++-+|.++.+. |
T Consensus 408 Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------f--------------------------- 454 (941)
T KOG0351|consen 408 YKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------F--------------------------- 454 (941)
T ss_pred HHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc------C---------------------------
Confidence 3445555556677788999999887888888888888777654321 1
Q ss_pred HHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCC
Q 004347 410 HAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNH 489 (759)
Q Consensus 410 ~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 489 (759)
.++...+-|....+. . .+..++..
T Consensus 455 -------------------nR~NL~yeV~~k~~~--~----------------------------~~~~~~~~------- 478 (941)
T KOG0351|consen 455 -------------------NRPNLKYEVSPKTDK--D----------------------------ALLDILEE------- 478 (941)
T ss_pred -------------------CCCCceEEEEeccCc--c----------------------------chHHHHHH-------
Confidence 122222222211110 0 00000000
Q ss_pred hhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHH
Q 004347 490 PDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDER 569 (759)
Q Consensus 490 p~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R 569 (759)
+ +....+...||||.+..+.+.+...|...|+....+|++++..+|
T Consensus 479 ---------------------------------~-~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R 524 (941)
T KOG0351|consen 479 ---------------------------------S-KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKER 524 (941)
T ss_pred ---------------------------------h-hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHH
Confidence 0 111346779999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEE
Q 004347 570 KRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR 637 (759)
Q Consensus 570 ~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyr 637 (759)
+.+-..|.. +.++| +++|=|.|.|||-+++..||||..|-+..-|.|..||++|.|+...++.|+
T Consensus 525 ~~Vq~~w~~--~~~~V-ivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 525 ETVQKAWMS--DKIRV-IVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred HHHHHHHhc--CCCeE-EEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEec
Confidence 999999997 34555 999999999999999999999999999999999999999999998876654
No 99
>PRK14701 reverse gyrase; Provisional
Probab=99.75 E-value=9.9e-17 Score=199.70 Aligned_cols=132 Identities=19% Similarity=0.266 Sum_probs=91.4
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-HHHHHHHHHHhCC---
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRFVP--- 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p--- 262 (759)
|..++|+|..++..++. |.+.++..+||+|||+..+.++..+... ...+|||+|+.. +.|..+.+..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~~~--g~~aLVl~PTreLa~Qi~~~l~~l~~~~~ 150 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLALK--GKKCYIILPTTLLVKQTVEKIESFCEKAN 150 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHHhc--CCeEEEEECHHHHHHHHHHHHHHHHhhcC
Confidence 44799999999998886 8899999999999998433332222222 247999999775 5778888888753
Q ss_pred -CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 263 -SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 263 -~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
...+..++|+........... ....+.++|+|+|++.+.......+ ..+++++||||||++.
T Consensus 151 ~~v~v~~~~g~~s~~e~~~~~~--~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 151 LDVRLVYYHSNLRKKEKEEFLE--RIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDAFL 213 (1638)
T ss_pred CceeEEEEeCCCCHHHHHHHHH--HHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECceecc
Confidence 346667777654332211000 0112468999999998876654333 3678999999999985
No 100
>PRK09694 helicase Cas3; Provisional
Probab=99.74 E-value=3.6e-16 Score=184.66 Aligned_cols=338 Identities=19% Similarity=0.176 Sum_probs=193.0
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHH-HHHHHHHH----hC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLS-NWVNEISR----FV 261 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~-~W~~E~~~----~~ 261 (759)
+..++|+|..+..-. .++...||-++||+|||..++.++..+...+....+++..|+..+. +....+.+ .+
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 568999999663221 2345578999999999999999888888777778999999977554 44455543 44
Q ss_pred CCceEEEEeCChhHHHHHHH-------------------hcCC--CCCCCCCCEEEecHHHHHHHHH----Hhhhh--cC
Q 004347 262 PSVSAIIYHGSKKERDEIRR-------------------KHMP--RAIGPKFPIVVTSYEVALSDAR----KYLRH--YN 314 (759)
Q Consensus 262 p~~~~~~~~g~~~~r~~~~~-------------------~~~~--~~~~~~~~vvIttye~l~~~~~----~~l~~--~~ 314 (759)
+...+.+.||.......... ..+. +...--.+|+|+|.+.+....- .+++. ..
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 55567777876542111100 0000 0000125899999988774321 12222 22
Q ss_pred ccEEEEcCcccccChhhH-HHHHHhcC--CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCch
Q 004347 315 WKYLVVDEGHRLKNPKCK-LLKELKYI--PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSE 391 (759)
Q Consensus 315 ~~~lIvDEaH~ikn~~s~-~~~~l~~l--~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~ 391 (759)
-.+|||||+|-+-..... +...+..+ .....|+||||+-..-..+|...+..-.+ .. ...-|........
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~-~~-----~~~~YPlvt~~~~- 512 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDP-VE-----LSSAYPLITWRGV- 512 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccc-cc-----ccccccccccccc-
Confidence 369999999998543333 33333333 23568999999843222222221100000 00 0000000000000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEE-ecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 004347 392 VMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILY-ATMTEHQRNFQDHLINKTLENHLREKVFSAGR 470 (759)
Q Consensus 392 ~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~-~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~ 470 (759)
. -..++-++.. ...+|......+. ....
T Consensus 513 ~-------------------~~~~~~~~~~----~~~~~~~~~v~v~~~~~~---------------------------- 541 (878)
T PRK09694 513 N-------------------GAQRFDLSAH----PEQLPARFTIQLEPICLA---------------------------- 541 (878)
T ss_pred c-------------------cceeeecccc----ccccCcceEEEEEeeccc----------------------------
Confidence 0 0000000000 0001111111000 0000
Q ss_pred cchhHHHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHH
Q 004347 471 GMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYF 550 (759)
Q Consensus 471 ~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L 550 (759)
.......++..++. ....|+++||||+.+..+..+...|
T Consensus 542 ----------------------------------------~~~~~~~~l~~i~~-~~~~g~~vLVf~NTV~~Aq~ly~~L 580 (878)
T PRK09694 542 ----------------------------------------DMLPDLTLLQRMIA-AANAGAQVCLICNLVDDAQKLYQRL 580 (878)
T ss_pred ----------------------------------------cccCHHHHHHHHHH-HHhcCCEEEEEECCHHHHHHHHHHH
Confidence 00001122222332 2346889999999999999999999
Q ss_pred HhcC---ceEEEEeCCCCHHHH----HHHHHHhh-ccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhh
Q 004347 551 NEKG---YEVCRIDGSVRLDER----KRQIQDFN-DVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMD 622 (759)
Q Consensus 551 ~~~g---~~~~~l~G~~~~~~R----~~~i~~F~-~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~g 622 (759)
...+ .++..+||.++..+| .++++.|. ++......+||+|.+...|||+ .+|.+|....| ...++||+|
T Consensus 581 ~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaG 657 (878)
T PRK09694 581 KELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLG 657 (878)
T ss_pred HhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHh
Confidence 8764 689999999999998 46788894 3221113479999999999999 57999887776 568899999
Q ss_pred hhhhcCCC
Q 004347 623 RCHRIGQT 630 (759)
Q Consensus 623 R~~RiGQ~ 630 (759)
|+||.|..
T Consensus 658 R~~R~~~~ 665 (878)
T PRK09694 658 RLHRHHRK 665 (878)
T ss_pred ccCCCCCC
Confidence 99999874
No 101
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=4.1e-16 Score=176.45 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=76.0
Q ss_pred HHHHHHHHHhc--CceEEEEeCCCCHHHH--HHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCC--CC-c-
Q 004347 543 LDIMEYYFNEK--GYEVCRIDGSVRLDER--KRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSD--WN-P- 614 (759)
Q Consensus 543 ld~L~~~L~~~--g~~~~~l~G~~~~~~R--~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~--wn-p- 614 (759)
.+.++..|... +.++.++|+.++...+ .++++.|.+++.+ +|++|+..+.|+|++.++.|+++|.+ .+ |
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 46677777665 7899999999876655 8999999985545 68999999999999999999876665 22 3
Q ss_pred --------chhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 615 --------QMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 615 --------~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
+.+.|+.||++|.+....|.|..+-..+
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 5689999999998877667665554444
No 102
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.73 E-value=2.3e-17 Score=153.15 Aligned_cols=120 Identities=28% Similarity=0.456 Sum_probs=110.6
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccc
Q 004347 514 GKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAG 593 (759)
Q Consensus 514 ~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ag 593 (759)
.|+..+..++.+....+.++||||++...++.+..+|...+.++..++|+++..+|..+++.|+.++ ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 5888899999988767899999999999999999999988999999999999999999999999844 3368899999
Q ss_pred cCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 594 GLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 594 g~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
++|+|++.+++||+++++|++..+.|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998877764
No 103
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.72 E-value=6e-16 Score=160.42 Aligned_cols=323 Identities=17% Similarity=0.177 Sum_probs=209.5
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCCceEEEEe
Q 004347 192 SYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVSAIIYH 270 (759)
Q Consensus 192 pyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~~~~~~ 270 (759)
|.|..+++-++. ....+.+++++|.||++ +..|..--..+-++||.|.. ++....+.+.+.-.....+-..
T Consensus 23 ~LQE~A~~c~VK---~k~DVyVsMPTGaGKSL-----CyQLPaL~~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSK 94 (641)
T KOG0352|consen 23 RLQEQAINCIVK---RKCDVYVSMPTGAGKSL-----CYQLPALVHGGITIVISPLIALIKDQIDHLKRLKVPCESLNSK 94 (641)
T ss_pred hHHHHHHHHHHh---ccCcEEEeccCCCchhh-----hhhchHHHhCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcch
Confidence 789999988874 46678999999999994 33333211235789999954 4455666666653222223333
Q ss_pred CChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH-HHh----hhhcCccEEEEcCcccccCh------hhH-HHHHHh
Q 004347 271 GSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA-RKY----LRHYNWKYLVVDEGHRLKNP------KCK-LLKELK 338 (759)
Q Consensus 271 g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~-~~~----l~~~~~~~lIvDEaH~ikn~------~s~-~~~~l~ 338 (759)
-+..+|.++.-.. ....+...++.+|+++...+. ... ..+....|+||||||....+ ... +...-.
T Consensus 95 lSt~ER~ri~~DL--~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS 172 (641)
T KOG0352|consen 95 LSTVERSRIMGDL--AKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS 172 (641)
T ss_pred hhHHHHHHHHHHH--HhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHh
Confidence 3555665543221 122345678889998876542 222 23445789999999987532 222 222223
Q ss_pred cCCCCcEEEEecCCCCCCHHHHHhhhhhccCC-CCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 339 YIPIGNKLLLTGTPLQNNLAELWSLLHFILPD-IFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 339 ~l~~~~rllLTgTPl~n~~~el~sll~fl~p~-~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
.+....-++||||.-..--++++..|++-.|- +|.+. .|..
T Consensus 173 ~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP-~FR~------------------------------------- 214 (641)
T KOG0352|consen 173 VCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP-TFRD------------------------------------- 214 (641)
T ss_pred hCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc-chhh-------------------------------------
Confidence 44555678999998777777888887776662 12111 1111
Q ss_pred hhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 418 LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
--+|+..+...+.+- +.++-.-.+++...|.-+...-
T Consensus 215 ----------------------------NLFYD~~~K~~I~D~---------------~~~LaDF~~~~LG~~~~~~~~~ 251 (641)
T KOG0352|consen 215 ----------------------------NLFYDNHMKSFITDC---------------LTVLADFSSSNLGKHEKASQNK 251 (641)
T ss_pred ----------------------------hhhHHHHHHHHhhhH---------------hHhHHHHHHHhcCChhhhhcCC
Confidence 112332222222111 1111111222222222111110
Q ss_pred cCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhh
Q 004347 498 SDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 577 (759)
Q Consensus 498 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 577 (759)
. ....--||||..+...+.+.-.|..+|++...+|.+....+|.++-+.|.
T Consensus 252 K-----------------------------~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM 302 (641)
T KOG0352|consen 252 K-----------------------------TFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWM 302 (641)
T ss_pred C-----------------------------CcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHh
Confidence 0 01234699999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEE
Q 004347 578 DVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR 637 (759)
Q Consensus 578 ~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyr 637 (759)
+++-. +|++|-..|.|+|-+.+..|||.+++-|..-|.|-.||++|.|-..=++.|+
T Consensus 303 ~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 303 NNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred cCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 74433 5999999999999999999999999999999999999999999777677765
No 104
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=5.4e-17 Score=167.54 Aligned_cols=318 Identities=21% Similarity=0.259 Sum_probs=210.2
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCeEEEECCccHHHHHHHH-HHhCCC-
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEI-SRFVPS- 263 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~-~~~~~~~LIV~P~sll~~W~~E~-~~~~p~- 263 (759)
..++...|..|+...+. |.+.+.-...|+|||.+-...+..... .....-+||++|.+.+.+...+. ..+...
T Consensus 46 FekPSaIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~ 121 (397)
T KOG0327|consen 46 FEKPSAIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHM 121 (397)
T ss_pred cCCchHHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccc
Confidence 34778899999988876 899999999999999983322222222 22233589999999887655543 334333
Q ss_pred -ceEEEEeC-ChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-HhhhhcCccEEEEcCccccc--ChhhHHHHHHh
Q 004347 264 -VSAIIYHG-SKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-KYLRHYNWKYLVVDEGHRLK--NPKCKLLKELK 338 (759)
Q Consensus 264 -~~~~~~~g-~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~-~~l~~~~~~~lIvDEaH~ik--n~~s~~~~~l~ 338 (759)
..+....| ....++.-.. ......|++.|++.+..-+. ..|...+.++.|+|||..++ +...+......
T Consensus 122 ~~~v~~~igg~~~~~~~~~i------~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~ 195 (397)
T KOG0327|consen 122 DVSVHACIGGTNVRREDQAL------LKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQ 195 (397)
T ss_pred ceeeeeecCcccchhhhhhh------hccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHH
Confidence 34443333 4333332111 12356899999987765442 24555568899999999886 44555666666
Q ss_pred cCCCC-cEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 339 YIPIG-NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 339 ~l~~~-~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
.++.. ..+++|||-- .++
T Consensus 196 ~lp~~vQv~l~SAT~p----~~v--------------------------------------------------------- 214 (397)
T KOG0327|consen 196 ELPSDVQVVLLSATMP----SDV--------------------------------------------------------- 214 (397)
T ss_pred HcCcchhheeecccCc----HHH---------------------------------------------------------
Confidence 66543 4577787731 000
Q ss_pred hhhhhhHHhhhCCCceEEEEEe---cCC-HHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhh
Q 004347 418 LRRMKSDVEQMLPRKKEIILYA---TMT-EHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLL 493 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e~~v~~---~ls-~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~ 493 (759)
++ +...+|.... .+.+ .+| +.++.+|-..
T Consensus 215 l~-----vt~~f~~~pv-~i~vkk~~ltl~gikq~~i~v----------------------------------------- 247 (397)
T KOG0327|consen 215 LE-----VTKKFMREPV-RILVKKDELTLEGIKQFYINV----------------------------------------- 247 (397)
T ss_pred HH-----HHHHhccCce-EEEecchhhhhhheeeeeeec-----------------------------------------
Confidence 00 0000110000 0000 011 0011111000
Q ss_pred hhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHH
Q 004347 494 ESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQI 573 (759)
Q Consensus 494 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i 573 (759)
..-.|+..|.++.. +-...+|||+...-++.|...|..+|+....+||.+.+.+|..++
T Consensus 248 -----------------~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~ 306 (397)
T KOG0327|consen 248 -----------------EKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLM 306 (397)
T ss_pred -----------------cccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHH
Confidence 00116666777666 235689999999999999999999999999999999999999999
Q ss_pred HHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHH
Q 004347 574 QDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILK 650 (759)
Q Consensus 574 ~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~ 650 (759)
..|+.+.+. +||+|+..++|||++.++.||+||.|-|...|.+|+||++|.|-+ -.+..++++. |++++.
T Consensus 307 ~ef~~gssr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~--d~~~lk 376 (397)
T KOG0327|consen 307 REFRSGSSR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEE--DVRDLK 376 (397)
T ss_pred HHhhcCCce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCC--ceeeeeehHh--hHHHHH
Confidence 999985555 699999999999999999999999999999999999999999943 3444566664 344443
No 105
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=5.8e-17 Score=168.04 Aligned_cols=317 Identities=22% Similarity=0.287 Sum_probs=222.9
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCC-CCCeEEEECCccHH----HHHHHHHHhC
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNGL-HGPYLVIAPLSTLS----NWVNEISRFV 261 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~~-~~~~LIV~P~sll~----~W~~E~~~~~ 261 (759)
.++.|.|++.++-++. +....-..-+|+|||.. .|.++..|..... .-+.||+.|+.-|. ....++.+++
T Consensus 42 ~~ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt 117 (529)
T KOG0337|consen 42 NTPTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT 117 (529)
T ss_pred CCCCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc
Confidence 4678999999998886 66555556699999988 5666677766432 34899999988663 3556666666
Q ss_pred CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccC--hhhHHHHHHh
Q 004347 262 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKCKLLKELK 338 (759)
Q Consensus 262 p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn--~~s~~~~~l~ 338 (759)
..-.+++|+|...+.+... +...+|||++|+..+..-.-. .|......|||+|||++|-. ..-++...+.
T Consensus 118 ~lr~s~~~ggD~~eeqf~~-------l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~ 190 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFIL-------LNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILS 190 (529)
T ss_pred chhhhhhcccchHHHHHHH-------hccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHH
Confidence 5556678888887765432 224789999999876533211 24444568999999999963 5567888888
Q ss_pred cCCCC-cEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 339 YIPIG-NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 339 ~l~~~-~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
+++.. ..+++|||- ++.+ .+|...- +..|..
T Consensus 191 rl~~~~QTllfSatl-p~~l------------------v~fakaG-----------------------------l~~p~l 222 (529)
T KOG0337|consen 191 RLPESRQTLLFSATL-PRDL------------------VDFAKAG-----------------------------LVPPVL 222 (529)
T ss_pred hCCCcceEEEEeccC-chhh------------------HHHHHcc-----------------------------CCCCce
Confidence 88644 568999983 1111 1121100 011111
Q ss_pred hhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 418 LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
+| -||+.. +++.. +.+.+
T Consensus 223 VR---ldvetk------------ise~l------------------------------------k~~f~----------- 240 (529)
T KOG0337|consen 223 VR---LDVETK------------ISELL------------------------------------KVRFF----------- 240 (529)
T ss_pred EE---eehhhh------------cchhh------------------------------------hhhee-----------
Confidence 11 011100 00000 00000
Q ss_pred cCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhh
Q 004347 498 SDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 577 (759)
Q Consensus 498 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 577 (759)
.+....|..+|..++..... .++.+||+.....++++...|...|+.+..+.|++.+..|...+.+|+
T Consensus 241 -----------~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~ 308 (529)
T KOG0337|consen 241 -----------RVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFR 308 (529)
T ss_pred -----------eeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccccc
Confidence 01223477788888776543 568999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 578 DVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 578 ~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
.+... +|+.|+++++|++++--+.||+||.|-.+..+.+|.||+.|.|.+ -..|-||+..
T Consensus 309 ~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~ 368 (529)
T KOG0337|consen 309 GRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVAST 368 (529)
T ss_pred CCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEecc
Confidence 75555 799999999999999999999999999999999999999999965 4566676654
No 106
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.71 E-value=1.8e-16 Score=156.32 Aligned_cols=152 Identities=25% Similarity=0.383 Sum_probs=110.4
Q ss_pred ccchhHHHHHHHHHHHhhcC---CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHhCCCc
Q 004347 189 KLKSYQLKGVKWLISLWQNG---LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVPSV 264 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~---~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~ 264 (759)
+|||||.+++.-++..+... .+++|..+||+|||++++.++..+.. ++||+||. +++.||..+|..+.+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 69999999999999877665 78999999999999999998888877 89999997 67799999998887654
Q ss_pred eEEEEeCC-------------hhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH------------hhhhcCccEEE
Q 004347 265 SAIIYHGS-------------KKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK------------YLRHYNWKYLV 319 (759)
Q Consensus 265 ~~~~~~g~-------------~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~------------~l~~~~~~~lI 319 (759)
........ ...... .. ......+++++++..+...... .+....+++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 78 YNFFEKSIKPAYDSKEFISIQDDISDK-SE-----SDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp EEEEE--GGGCCE-SEEETTTTEEEHH-HH-----HCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred hhhcccccccccccccccccccccccc-cc-----cccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 44322110 000000 00 1124678999999998876532 12334689999
Q ss_pred EcCcccccChhhHHHHHHhcCCCCcEEEEecCCC
Q 004347 320 VDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPL 353 (759)
Q Consensus 320 vDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTPl 353 (759)
+||||++.+... ++.+..+...++|+|||||.
T Consensus 152 ~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred EehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 999999976443 55555588899999999995
No 107
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.70 E-value=2e-14 Score=146.01 Aligned_cols=313 Identities=18% Similarity=0.220 Sum_probs=207.6
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHhCCCce
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVPSVS 265 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~ 265 (759)
.|+|.|+|..+-+-++..+.+....|+-.-+|+|||-+....+...+..| +++.|..|. .++-.-...+..-+++..
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G--~~vciASPRvDVclEl~~Rlk~aF~~~~ 172 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG--GRVCIASPRVDVCLELYPRLKQAFSNCD 172 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC--CeEEEecCcccchHHHHHHHHHhhccCC
Confidence 57999999999999999999999999999999999998888888777765 789999994 466666677777788788
Q ss_pred EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC-hhhHHHHHHhcC--CC
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN-PKCKLLKELKYI--PI 342 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l--~~ 342 (759)
+.+.||.....- ..++||+|-..+.+-. ..||++||||.+-+-- .+-.+..+++.- ..
T Consensus 173 I~~Lyg~S~~~f-------------r~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 173 IDLLYGDSDSYF-------------RAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred eeeEecCCchhc-------------cccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 877777664421 2356665555444332 2579999999998742 223344444433 45
Q ss_pred CcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhh-HHhhhh
Q 004347 343 GNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRP-FLLRRM 421 (759)
Q Consensus 343 ~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p-~~lRR~ 421 (759)
...|.|||||-..-..++-. .-+.+ .+-+|.
T Consensus 234 g~~IylTATp~k~l~r~~~~------------------------------------------------g~~~~~klp~Rf 265 (441)
T COG4098 234 GATIYLTATPTKKLERKILK------------------------------------------------GNLRILKLPARF 265 (441)
T ss_pred CceEEEecCChHHHHHHhhh------------------------------------------------CCeeEeecchhh
Confidence 67899999993111000000 00000 000111
Q ss_pred hhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCC
Q 004347 422 KSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSC 501 (759)
Q Consensus 422 k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~ 501 (759)
. ...||-.+ .+++. ..-+.+.
T Consensus 266 H---~~pLpvPk--f~w~~--~~~k~l~---------------------------------------------------- 286 (441)
T COG4098 266 H---GKPLPVPK--FVWIG--NWNKKLQ---------------------------------------------------- 286 (441)
T ss_pred c---CCCCCCCc--eEEec--cHHHHhh----------------------------------------------------
Confidence 0 01233221 22221 1111000
Q ss_pred CCCchHHHHhhccHHH-HHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc-C-ceEEEEeCCCCHHHHHHHHHHhhc
Q 004347 502 FYPPVEQIVEQCGKFR-LLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK-G-YEVCRIDGSVRLDERKRQIQDFND 578 (759)
Q Consensus 502 ~~~~~~~l~~~s~K~~-~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~-g-~~~~~l~G~~~~~~R~~~i~~F~~ 578 (759)
-+|+. .|..+|++....|..++||...+.++..+...|... + ..++.+|.... .|.+.+++|++
T Consensus 287 -----------r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~ 353 (441)
T COG4098 287 -----------RNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRD 353 (441)
T ss_pred -----------hccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHc
Confidence 01222 466777888888999999999999999999988543 2 23455655544 79999999997
Q ss_pred cCCCceEEEEecccccCCCCCCCCCEEEEeCCC--CCcchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 579 VNSSYRIFLLSTRAGGLGINLTAADTCILYDSD--WNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 579 ~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~--wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
+.-. +|++|..+.+|+.++..++.++=--. ++-+...|.-||++|--..-.-.|+.|...-|
T Consensus 354 G~~~---lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 354 GKIT---LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred CceE---EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 4333 69999999999999999999885443 88899999999999965433344555544433
No 108
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.70 E-value=1.6e-15 Score=182.78 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=88.6
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCce---EEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYE---VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTC 605 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~---~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~V 605 (759)
....+|||++....++.+...|...+++ +..+||+++.++|..+++.+ +. +-+|+||+++++||+++++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~-rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SG-RRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CC-eeEEEeccHHhhccccCcceEE
Confidence 3568999999999999999999887765 67899999999999887642 23 3369999999999999999999
Q ss_pred EEeC---------------CCCCc---chhhHHhhhhhhcCCCCceEEEEEeeCCCHH
Q 004347 606 ILYD---------------SDWNP---QMDLQAMDRCHRIGQTKPVHVYRLATAQSVE 645 (759)
Q Consensus 606 I~~D---------------~~wnp---~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvE 645 (759)
|.++ .+..| ..+.||.||++|. .+-.+|+|++...++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 9985 33333 5688999999997 467789999876443
No 109
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.69 E-value=3.6e-15 Score=174.58 Aligned_cols=311 Identities=20% Similarity=0.222 Sum_probs=208.4
Q ss_pred CCccchhHHHHHHHHHHHhhcCCC--eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHH-HHHHHHHHhCCC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLN--GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLS-NWVNEISRFVPS 263 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~--~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~-~W~~E~~~~~p~ 263 (759)
+..-.|-|+.++.-...-+.+++- -+||-++|.|||=.|+-.+-.....| +-+.|+||+.+|. |..+.|..-+.+
T Consensus 592 PyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G--KQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 592 PYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG--KQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred CCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC--CeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 346779999999999886666553 49999999999998875443333333 6899999998874 455556555545
Q ss_pred ceEEEEe----CChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhc
Q 004347 264 VSAIIYH----GSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKY 339 (759)
Q Consensus 264 ~~~~~~~----g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~ 339 (759)
+.+-+-. -+..+...+.. ....+..||||.|+..+..+. .-.+..+|||||=||+.-. .-..++.
T Consensus 670 fPV~I~~LSRF~s~kE~~~il~----~la~G~vDIvIGTHrLL~kdv----~FkdLGLlIIDEEqRFGVk---~KEkLK~ 738 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEILK----GLAEGKVDIVIGTHRLLSKDV----KFKDLGLLIIDEEQRFGVK---HKEKLKE 738 (1139)
T ss_pred CCeeEEEecccCCHHHHHHHHH----HHhcCCccEEEechHhhCCCc----EEecCCeEEEechhhcCcc---HHHHHHH
Confidence 4443321 12223222222 223478999999999886664 2234579999999998532 2334555
Q ss_pred CC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHh
Q 004347 340 IP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 418 (759)
Q Consensus 340 l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~l 418 (759)
++ ..+.|-|||||++-.+.-= |.. +
T Consensus 739 Lr~~VDvLTLSATPIPRTL~Ms--m~G----------------------------------------------------i 764 (1139)
T COG1197 739 LRANVDVLTLSATPIPRTLNMS--LSG----------------------------------------------------I 764 (1139)
T ss_pred HhccCcEEEeeCCCCcchHHHH--Hhc----------------------------------------------------c
Confidence 54 5578999999997764420 000 0
Q ss_pred hhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhcc
Q 004347 419 RRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFS 498 (759)
Q Consensus 419 RR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 498 (759)
|--+.+ .-||.....|..-..+....+.+
T Consensus 765 -RdlSvI--~TPP~~R~pV~T~V~~~d~~~ir------------------------------------------------ 793 (1139)
T COG1197 765 -RDLSVI--ATPPEDRLPVKTFVSEYDDLLIR------------------------------------------------ 793 (1139)
T ss_pred -hhhhhc--cCCCCCCcceEEEEecCChHHHH------------------------------------------------
Confidence 000011 13444333332222221111111
Q ss_pred CCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc--CceEEEEeCCCCHHHHHHHHHHh
Q 004347 499 DSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK--GYEVCRIDGSVRLDERKRQIQDF 576 (759)
Q Consensus 499 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~~F 576 (759)
..+++++ .+|.+|..-.+....+..+...|... ...++..||.|+..+-.+++..|
T Consensus 794 ---------------------eAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F 851 (1139)
T COG1197 794 ---------------------EAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDF 851 (1139)
T ss_pred ---------------------HHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHH
Confidence 1122222 46777777778888888888888775 56799999999999999999999
Q ss_pred hccCCCceEEEEecccccCCCCCCCCCEEEEeCCC-CCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 577 NDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSD-WNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 577 ~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
.+++-+ +|+||.....|||+++|||+|+-+.+ +--++..|--||++|-. +.-+.|.++..+
T Consensus 852 ~~g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~~ 913 (1139)
T COG1197 852 YNGEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPPQ 913 (1139)
T ss_pred HcCCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecCc
Confidence 985555 59999999999999999999998886 57778899999999964 446888887753
No 110
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.9e-15 Score=174.94 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=107.4
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
...|+.++.+-+.++.+.|..|||||.+....+.|..+|...|+++..++|.....+|..+.+.|+.+ . ++|+|.
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEecc
Confidence 34599999999999999999999999999999999999999999999999999999999999999973 3 799999
Q ss_pred cccCCCCCC-C-------------------------------------CCEEEEeCCCCCcchhhHHhhhhhhcCCCCce
Q 004347 592 AGGLGINLT-A-------------------------------------ADTCILYDSDWNPQMDLQAMDRCHRIGQTKPV 633 (759)
Q Consensus 592 agg~GINL~-~-------------------------------------a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 633 (759)
.+|+|+|+. + -=+||.-..+-|--.+.|-.||++|.|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 999999986 2 23788888999999999999999999987765
Q ss_pred EEE
Q 004347 634 HVY 636 (759)
Q Consensus 634 ~Vy 636 (759)
..|
T Consensus 581 ~f~ 583 (896)
T PRK13104 581 RFY 583 (896)
T ss_pred EEE
Confidence 544
No 111
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=3.7e-15 Score=171.80 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=102.5
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
..|+..+.+.+......|..|||||.+....+.|...|...|+++..++|.+...++.-+...+.. +. ++|+|..
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~---VtIATnm 497 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA---VTIATNM 497 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce---EEEEecc
Confidence 358899999998888899999999999999999999999999999999999886666666666654 33 7999999
Q ss_pred ccCCCCCC---CCC-----EEEEeCCCCCcchhhHHhhhhhhcCCCCce
Q 004347 593 GGLGINLT---AAD-----TCILYDSDWNPQMDLQAMDRCHRIGQTKPV 633 (759)
Q Consensus 593 gg~GINL~---~a~-----~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 633 (759)
+|+|+|+. .+. +||.++.|-|...|.|+.||++|.|..-..
T Consensus 498 AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 498 AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 99999994 677 999999999999999999999999987664
No 112
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=1.3e-14 Score=167.99 Aligned_cols=401 Identities=16% Similarity=0.162 Sum_probs=221.5
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH----HHHHHHHHHh
Q 004347 185 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL----SNWVNEISRF 260 (759)
Q Consensus 185 ~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll----~~W~~E~~~~ 260 (759)
..|-.+++-|+-|.--| ..|.|.-..||.|||+++...+....-.| ..+-||+|+..| .+|...+-++
T Consensus 77 ~lg~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~l~aL~G--~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 77 VLGMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAYLNALTG--KGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred HhCCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 35667888999877544 34568889999999998654332111122 246699999877 3477777777
Q ss_pred CCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHH-HHHHHh-------hhhcCccEEEEcCcccccChhhH
Q 004347 261 VPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVAL-SDARKY-------LRHYNWKYLVVDEGHRLKNPKCK 332 (759)
Q Consensus 261 ~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~-~~~~~~-------l~~~~~~~lIvDEaH~ikn~~s~ 332 (759)
+ ++++.+..|.......... -..+|++.|+..+- ..++.. +...++.++|||||+.+.=..
T Consensus 149 L-Glsv~~i~~~~~~~er~~~--------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDe-- 217 (830)
T PRK12904 149 L-GLSVGVILSGMSPEERREA--------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDE-- 217 (830)
T ss_pred c-CCeEEEEcCCCCHHHHHHh--------cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheecc--
Confidence 6 4566666554333221111 13689999988873 333222 223468899999999875211
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCCh------------------HHHHHHhcccCCCCchhhH
Q 004347 333 LLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSL------------------EEFQSWFDLSGKCNSEVMK 394 (759)
Q Consensus 333 ~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~------------------~~F~~~f~~~~~~~~~~~~ 394 (759)
++.-+.+||.+- ...++|..++-+-+.+-... ......|.......
T Consensus 218 ---------ArtpLiiSg~~~--~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~----- 281 (830)
T PRK12904 218 ---------ARTPLIISGPAE--DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYD----- 281 (830)
T ss_pred ---------CCCceeeECCCC--cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccC-----
Confidence 234477787643 22345554444333221110 00111111100000
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-HHhhhhhhHHhhhCCCceEEEEEecCC-------HHHHHHHHHHHHHH----------
Q 004347 395 EELEEKRRGQMVAKLHAILRP-FLLRRMKSDVEQMLPRKKEIILYATMT-------EHQRNFQDHLINKT---------- 456 (759)
Q Consensus 395 ~~~~~~~~~~~~~~L~~il~p-~~lRR~k~dv~~~LP~k~e~~v~~~ls-------~~q~~~y~~l~~~~---------- 456 (759)
.........+...|+. +++.|-..-+. ... +.++--..| .+..-+.+.+-.+.
T Consensus 282 -----~~~~~~~~~i~~AL~A~~l~~~d~dYiV---~dg-~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t 352 (830)
T PRK12904 282 -----PENIALVHHLNQALRAHELFKRDVDYIV---KDG-EVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQT 352 (830)
T ss_pred -----hhhhHHHHHHHHHHHHHHHHhcCCcEEE---ECC-EEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCcee
Confidence 0000111222222221 22233222111 111 111111111 11112222221000
Q ss_pred -----HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCCC-chHHHHhhccHHHHHHHHHHHHhhCC
Q 004347 457 -----LENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYP-PVEQIVEQCGKFRLLDRLLARLFARN 530 (759)
Q Consensus 457 -----~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~-~~~~l~~~s~K~~~L~~lL~~l~~~~ 530 (759)
...+++. ...-.++.+.....-..+.++.+-+...-.+..+..... +..-......|+.++.+.+.++...|
T Consensus 353 ~a~It~qn~Fr~--Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~g 430 (830)
T PRK12904 353 LASITFQNYFRM--YEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKG 430 (830)
T ss_pred eeeeeHHHHHHh--cchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcC
Confidence 0000000 000011111111222344454444433222211100000 00001123359999999999888899
Q ss_pred CcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCC---------
Q 004347 531 HKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTA--------- 601 (759)
Q Consensus 531 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~--------- 601 (759)
..|||||.+....+.|...|...|+++..++|. +.+|...+..|..+... ++|+|+.+|+|+|+.-
T Consensus 431 rpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNmAGRGtDI~LgGn~~~~~~ 505 (830)
T PRK12904 431 QPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNMAGRGTDIKLGGNPEMLAA 505 (830)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecccccCCcCccCCCchhhhhh
Confidence 999999999999999999999999999999996 66899999999864444 7999999999999863
Q ss_pred -----------------------------CCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 602 -----------------------------ADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 602 -----------------------------a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
-=+||.-..+-|--.+.|..||++|.|..-....|
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 506 ALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred hhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 34788888999999999999999999988775544
No 113
>COG4889 Predicted helicase [General function prediction only]
Probab=99.65 E-value=2.7e-15 Score=166.85 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=106.8
Q ss_pred cccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHh
Q 004347 182 VSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRF 260 (759)
Q Consensus 182 ~~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~ 260 (759)
+|+....+|||||..++...++.+..+-+|=|-+.+|+|||.+++-+...+.. .++|.++|. ++|+|-.+|...-
T Consensus 154 l~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~----~~iL~LvPSIsLLsQTlrew~~~ 229 (1518)
T COG4889 154 LPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA----ARILFLVPSISLLSQTLREWTAQ 229 (1518)
T ss_pred cccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh----hheEeecchHHHHHHHHHHHhhc
Confidence 45566779999999999999999988888888899999999999998887766 589999995 4666644443221
Q ss_pred C-CCce-EEEEeCChhHH-------------------HHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-HhhhhcCccEE
Q 004347 261 V-PSVS-AIIYHGSKKER-------------------DEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-KYLRHYNWKYL 318 (759)
Q Consensus 261 ~-p~~~-~~~~~g~~~~r-------------------~~~~~~~~~~~~~~~~~vvIttye~l~~~~~-~~l~~~~~~~l 318 (759)
. -.++ ..++..++..| ..+.... .+....+.-||.+||+.+..-.. ...-.-.|++|
T Consensus 230 ~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~-~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDli 308 (1518)
T COG4889 230 KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEME-HRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLI 308 (1518)
T ss_pred cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHH-HhhccCCcEEEEEcccchHHHHHHHHcCCCCccEE
Confidence 1 1122 22222222211 1111100 11123456799999998765421 12334468999
Q ss_pred EEcCcccccC------hhhHHHHHH--hcCCCCcEEEEecCC
Q 004347 319 VVDEGHRLKN------PKCKLLKEL--KYIPIGNKLLLTGTP 352 (759)
Q Consensus 319 IvDEaH~ikn------~~s~~~~~l--~~l~~~~rllLTgTP 352 (759)
|||||||-.. ..+...+.. ..+++..|+.+||||
T Consensus 309 icDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 309 ICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred EecchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 9999999642 122222221 234667889999999
No 114
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.64 E-value=1.4e-14 Score=147.92 Aligned_cols=316 Identities=17% Similarity=0.171 Sum_probs=215.7
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHhCCCce
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVPSVS 265 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~ 265 (759)
-.+.||.|+.+++..+. +...+|...+|-||++ +..|..--..|-.|||||. +++....-.++...-+..
T Consensus 92 lekfrplq~~ain~~ma----~ed~~lil~tgggksl-----cyqlpal~adg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 92 LEKFRPLQLAAINATMA----GEDAFLILPTGGGKSL-----CYQLPALCADGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HHhcChhHHHHhhhhhc----cCceEEEEeCCCccch-----hhhhhHHhcCCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 35789999999998887 8899999999999994 3444333334789999994 455555556666654444
Q ss_pred EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHH------HHHhhhhcCccEEEEcCcccccC-------hhhH
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSD------ARKYLRHYNWKYLVVDEGHRLKN-------PKCK 332 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~------~~~~l~~~~~~~lIvDEaH~ikn-------~~s~ 332 (759)
.+-...++.+-.++.... ......+.++..|++.+... +.+.+....|.++-|||.|.+.. ....
T Consensus 163 ~lnansske~~k~v~~~i--~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~ 240 (695)
T KOG0353|consen 163 MLNANSSKEEAKRVEAAI--TNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKA 240 (695)
T ss_pred hccCcccHHHHHHHHHHH--cCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHH
Confidence 444444444433332221 22345788899999876443 33345555689999999998753 2344
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 004347 333 LLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAI 412 (759)
Q Consensus 333 ~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i 412 (759)
+.-.-+.++....|+||||...+-+.+...+|..-.. -.|..-|.
T Consensus 241 l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~------~tf~a~fn----------------------------- 285 (695)
T KOG0353|consen 241 LGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA------FTFRAGFN----------------------------- 285 (695)
T ss_pred HHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh------heeecccC-----------------------------
Confidence 5555567889999999999988877776665532100 01111111
Q ss_pred hhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhh
Q 004347 413 LRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDL 492 (759)
Q Consensus 413 l~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 492 (759)
-|.....++--|-+.. .+...+
T Consensus 286 ----------------r~nl~yev~qkp~n~d--d~~edi---------------------------------------- 307 (695)
T KOG0353|consen 286 ----------------RPNLKYEVRQKPGNED--DCIEDI---------------------------------------- 307 (695)
T ss_pred ----------------CCCceeEeeeCCCChH--HHHHHH----------------------------------------
Confidence 1222111211111111 111111
Q ss_pred hhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHH
Q 004347 493 LESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQ 572 (759)
Q Consensus 493 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 572 (759)
.+++..-+ .|..-||||-+..-.+.+...|...|+....+|..+.+.+|...
T Consensus 308 ---------------------------~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 308 ---------------------------AKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGA 359 (695)
T ss_pred ---------------------------HHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccc
Confidence 11111111 36778999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhH---------------------------------
Q 004347 573 IQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQ--------------------------------- 619 (759)
Q Consensus 573 i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Q--------------------------------- 619 (759)
.+.|-. +.++| +++|-|.|.||+-+.+..|||-..|-+...|.|
T Consensus 360 hq~w~a--~eiqv-ivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnf 436 (695)
T KOG0353|consen 360 HQGWIA--GEIQV-IVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNF 436 (695)
T ss_pred cccccc--cceEE-EEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccc
Confidence 888886 56666 889999999999999999999999999999999
Q ss_pred ----------HhhhhhhcCCCCceEEEE
Q 004347 620 ----------AMDRCHRIGQTKPVHVYR 637 (759)
Q Consensus 620 ----------a~gR~~RiGQ~k~V~Vyr 637 (759)
-.||++|.|++..+..|+
T Consensus 437 kiffavfsekesgragrd~~~a~cilyy 464 (695)
T KOG0353|consen 437 KIFFAVFSEKESGRAGRDDMKADCILYY 464 (695)
T ss_pred eeeeeeecchhccccccCCCcccEEEEe
Confidence 568999999999966655
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.64 E-value=9.8e-14 Score=160.89 Aligned_cols=133 Identities=20% Similarity=0.207 Sum_probs=113.3
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
..+++..|.+.+..+...|.++||||.....++.|..+|...|+++..+||.++..+|.+++..|.. +.+. +|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~--G~i~-VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL--GEFD-VLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc--CCce-EEEEcC
Confidence 3467888888888888899999999999999999999999999999999999999999999999987 3444 589999
Q ss_pred cccCCCCCCCCCEEEEeC-----CCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCC--HHHHHHH
Q 004347 592 AGGLGINLTAADTCILYD-----SDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS--VEGRILK 650 (759)
Q Consensus 592 agg~GINL~~a~~VI~~D-----~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T--vEe~i~~ 650 (759)
.+++|++++.++.||++| .|-+...++|++||++|.. +-.|+.|+...| +...|.+
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999999999 5668889999999999963 345666766655 4444443
No 116
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.63 E-value=2.4e-14 Score=173.25 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=88.7
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcC---ceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKG---YEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTC 605 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~V 605 (759)
....+|||+.....++.+...|...+ +.+..+||+++.++|.+++..+ +. +-+|+||+.+++||+++++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~----~~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH----SG-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC----CC-ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4588899999999999885543 22 3369999999999999999999
Q ss_pred EEeCCC----C--------------CcchhhHHhhhhhhcCCCCceEEEEEeeCCCHH
Q 004347 606 ILYDSD----W--------------NPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVE 645 (759)
Q Consensus 606 I~~D~~----w--------------np~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvE 645 (759)
|.++.+ + +-..+.||.||++|.| +-.+|+|++....+
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 998743 1 3357899999999997 77789999876443
No 117
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.63 E-value=4.2e-16 Score=131.17 Aligned_cols=78 Identities=33% Similarity=0.612 Sum_probs=73.1
Q ss_pred HHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhc
Q 004347 548 YYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRI 627 (759)
Q Consensus 548 ~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 627 (759)
.+|...|+++..+||+++..+|..+++.|+.++.. +|++|.++++|||++.+++||+|+++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 36788999999999999999999999999985553 699999999999999999999999999999999999999999
Q ss_pred C
Q 004347 628 G 628 (759)
Q Consensus 628 G 628 (759)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 8
No 118
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.62 E-value=5.8e-15 Score=146.65 Aligned_cols=160 Identities=29% Similarity=0.349 Sum_probs=116.9
Q ss_pred cCCccchhHHHHHHHHHHHhhcC-CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC-CccHHHHHHHHHHhCCC
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNG-LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP-LSTLSNWVNEISRFVPS 263 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~-~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P-~sll~~W~~E~~~~~p~ 263 (759)
...+++|||.+++..+.. . .++++..++|+|||..++.++......+..+++||++| ..+..+|..++..+.+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 5 GFEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred CCCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 356899999999998874 4 78999999999999988877777776655679999999 55678999999998865
Q ss_pred ---ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh-hhhcCccEEEEcCcccccC--hhhHHHHHH
Q 004347 264 ---VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY-LRHYNWKYLVVDEGHRLKN--PKCKLLKEL 337 (759)
Q Consensus 264 ---~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~-l~~~~~~~lIvDEaH~ikn--~~s~~~~~l 337 (759)
.....+++...... +... ....++++++||+.+....... +...+++++|+||+|.+.+ ........+
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 81 LGLKVVGLYGGDSKREQ-LRKL-----ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred CCeEEEEEeCCcchHHH-HHHH-----hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 34455555443221 1111 1123489999999988776432 3455788999999999985 334444444
Q ss_pred hcC-CCCcEEEEecCCCCC
Q 004347 338 KYI-PIGNKLLLTGTPLQN 355 (759)
Q Consensus 338 ~~l-~~~~rllLTgTPl~n 355 (759)
..+ +..+++++||||..+
T Consensus 155 ~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 155 KLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HhCCccceEEEEecCCchh
Confidence 444 577889999999643
No 119
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=1.3e-13 Score=159.40 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=106.0
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
-.|+.++.+-+..+.+.|..|||||.+....+.|..+|...|+++..+++..+..+|..+.+.|+. +. ++|+|..
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~--G~---VtIATnm 506 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT--GA---VTIATNM 506 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC--Cc---EEEecCC
Confidence 458899999999999999999999999999999999999999999999999999999999999987 33 7999999
Q ss_pred ccCCCCCC-------------------------------------CCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEE
Q 004347 593 GGLGINLT-------------------------------------AADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHV 635 (759)
Q Consensus 593 gg~GINL~-------------------------------------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 635 (759)
+|+|+|+. +-=+||.-..+-|--.+.|..||++|.|..-.-..
T Consensus 507 AGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f 586 (908)
T PRK13107 507 AGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRF 586 (908)
T ss_pred cCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeE
Confidence 99999986 23478888999999999999999999998766443
No 120
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.59 E-value=1.8e-13 Score=156.21 Aligned_cols=319 Identities=18% Similarity=0.212 Sum_probs=181.7
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHH-HHHHHHhC---C----CCCCeEEEECCc-cHHHHHHHHHH
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIA-FLAHLKGN---G----LHGPYLVIAPLS-TLSNWVNEISR 259 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~-li~~l~~~---~----~~~~~LIV~P~s-ll~~W~~E~~~ 259 (759)
.|--.|-.+..-+ |+.+.|+|++.+||+|||..+.. +++.+.+. + ..-+++.|+|.. +.....+.+.+
T Consensus 110 ~fN~iQS~vFp~a---Y~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 110 EFNRIQSEVFPVA---YKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred HHHHHHHHhhhhh---hcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 3444455444433 47788999999999999988754 44444431 1 123789999954 43333333333
Q ss_pred hCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHH---HH---HHHhhhhcCccEEEEcCcccccChhh
Q 004347 260 FVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVAL---SD---ARKYLRHYNWKYLVVDEGHRLKNPKC 331 (759)
Q Consensus 260 ~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~---~~---~~~~l~~~~~~~lIvDEaH~ikn~~s 331 (759)
-+. ++.+.-++|+..--..- -...+|+|||++..- +. ...++.. ..+|||||.|.+.....
T Consensus 187 kl~~~gi~v~ELTGD~ql~~te---------i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~--V~LviIDEVHlLhd~RG 255 (1230)
T KOG0952|consen 187 KLAPLGISVRELTGDTQLTKTE---------IADTQIIVTTPEKWDVVTRKSVGDSALFSL--VRLVIIDEVHLLHDDRG 255 (1230)
T ss_pred hcccccceEEEecCcchhhHHH---------HHhcCEEEecccceeeeeeeeccchhhhhh--eeeEEeeeehhhcCccc
Confidence 222 67888899987543221 136789999998641 10 0123333 47999999999987554
Q ss_pred H-----HHHHHhc----CCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHH
Q 004347 332 K-----LLKELKY----IPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRR 402 (759)
Q Consensus 332 ~-----~~~~l~~----l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~ 402 (759)
. +.+.++. ...-+.++||||- + |..|+ -.||..........|...|.
T Consensus 256 pvlEtiVaRtlr~vessqs~IRivgLSATl-P-N~eDv---A~fL~vn~~~glfsFd~~yR------------------- 311 (1230)
T KOG0952|consen 256 PVLETIVARTLRLVESSQSMIRIVGLSATL-P-NYEDV---ARFLRVNPYAGLFSFDQRYR------------------- 311 (1230)
T ss_pred chHHHHHHHHHHHHHhhhhheEEEEeeccC-C-CHHHH---HHHhcCCCccceeeeccccc-------------------
Confidence 3 3344422 2344669999993 2 33443 34444443333334444331
Q ss_pred HHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCC--HHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHH
Q 004347 403 GQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMT--EHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLM 480 (759)
Q Consensus 403 ~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls--~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 480 (759)
| .|- ...++-+... ..|....+..
T Consensus 312 ------------P-------------vpL-~~~~iG~k~~~~~~~~~~~d~~---------------------------- 337 (1230)
T KOG0952|consen 312 ------------P-------------VPL-TQGFIGIKGKKNRQQKKNIDEV---------------------------- 337 (1230)
T ss_pred ------------c-------------cce-eeeEEeeecccchhhhhhHHHH----------------------------
Confidence 1 110 0111111110 1111111111
Q ss_pred HHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc----C--
Q 004347 481 VQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK----G-- 554 (759)
Q Consensus 481 ~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~----g-- 554 (759)
++..+. +...+|+.|+||+..+.-.-.....|... |
T Consensus 338 ----------------------------------~~~kv~----e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~ 379 (1230)
T KOG0952|consen 338 ----------------------------------CYDKVV----EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEK 379 (1230)
T ss_pred ----------------------------------HHHHHH----HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcc
Confidence 111111 12246888888887765333332222211 1
Q ss_pred -----------------ceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcch-
Q 004347 555 -----------------YEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQM- 616 (759)
Q Consensus 555 -----------------~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~- 616 (759)
..+...|.++.-.+|+-+-+.|.. +.+.| |++|...+.|+||++-..+|-=..-|++..
T Consensus 380 ~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~--G~i~v-L~cTaTLAwGVNLPA~aViIKGT~~ydsskg 456 (1230)
T KOG0952|consen 380 DLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE--GHIKV-LCCTATLAWGVNLPAYAVIIKGTQVYDSSKG 456 (1230)
T ss_pred cccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc--CCceE-EEecceeeeccCCcceEEEecCCcccccccC
Confidence 124456778888999999999997 45555 999999999999997766666556666665
Q ss_pred ---------hhHHhhhhhhcCCCCceEEEEEee
Q 004347 617 ---------DLQAMDRCHRIGQTKPVHVYRLAT 640 (759)
Q Consensus 617 ---------~~Qa~gR~~RiGQ~k~V~Vyrli~ 640 (759)
.+|-.|||+|.+=.+.-..+-+.+
T Consensus 457 ~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt 489 (1230)
T KOG0952|consen 457 SFVDLGILDVLQIFGRAGRPQFDSSGEGIIITT 489 (1230)
T ss_pred ceeeehHHHHHHHHhccCCCCCCCCceEEEEec
Confidence 479999999986544433333333
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.58 E-value=6.8e-13 Score=155.04 Aligned_cols=125 Identities=18% Similarity=0.209 Sum_probs=109.1
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
.+++..|...|..+...|.++||||.....++.|..+|...|+++..+||.++..+|..++..|.. +.+. +|++|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~--g~i~-vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFD-VLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc--CCce-EEEEeCH
Confidence 457788888888888899999999999999999999999999999999999999999999999986 3444 5899999
Q ss_pred ccCCCCCCCCCEEEEeCC-----CCCcchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 593 GGLGINLTAADTCILYDS-----DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 593 gg~GINL~~a~~VI~~D~-----~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
+++|++++.++.||++|. |-++..|.|++||++|- +.-.++.|++..|
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~~ 558 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---VNGKVILYADKIT 558 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC---CCCEEEEEecCCC
Confidence 999999999999999997 46889999999999994 2445667776543
No 122
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.56 E-value=4.7e-14 Score=131.75 Aligned_cols=137 Identities=27% Similarity=0.325 Sum_probs=102.0
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH-HHHHHHHhCC-CceEEEEeCChhHHHHHHHhcCCCC
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN-WVNEISRFVP-SVSAIIYHGSKKERDEIRRKHMPRA 287 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~-W~~E~~~~~p-~~~~~~~~g~~~~r~~~~~~~~~~~ 287 (759)
++++.+++|+|||.+++.++..+...+..++++|+||...+.+ |...+..+.. ...+.++++..........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL------ 75 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH------
Confidence 6799999999999999999999888767789999999886655 5566677664 4566666665544433211
Q ss_pred CCCCCCEEEecHHHHHHHHHHh-hhhcCccEEEEcCcccccChhhHHH---HHHhcCCCCcEEEEecCC
Q 004347 288 IGPKFPIVVTSYEVALSDARKY-LRHYNWKYLVVDEGHRLKNPKCKLL---KELKYIPIGNKLLLTGTP 352 (759)
Q Consensus 288 ~~~~~~vvIttye~l~~~~~~~-l~~~~~~~lIvDEaH~ikn~~s~~~---~~l~~l~~~~rllLTgTP 352 (759)
.....+++++||+.+....... +....|+++|+||+|.+.+...... .........+++++||||
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 1257789999999887665321 2344789999999999987665443 445556778899999998
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=9.8e-13 Score=152.78 Aligned_cols=116 Identities=14% Similarity=0.180 Sum_probs=102.1
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
..|+..|.+.+..+...|..|||||++....+.|..+|...|+++..|++ .+.+|...+-.|....+. ++|+|+.
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~---VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA---VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe---EEEeccC
Confidence 35999999999998889999999999999999999999999999999998 567999999999864333 7999999
Q ss_pred ccCCCCCCCCC--------EEEEeCCCCCcchhhHHhhhhhhcCCCCce
Q 004347 593 GGLGINLTAAD--------TCILYDSDWNPQMDLQAMDRCHRIGQTKPV 633 (759)
Q Consensus 593 gg~GINL~~a~--------~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 633 (759)
+|+|+|+.-.. +||.++.|-+...|.|++||++|.|..-..
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 99999998333 348889999999999999999999977654
No 124
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.50 E-value=5.7e-14 Score=118.75 Aligned_cols=81 Identities=28% Similarity=0.548 Sum_probs=74.7
Q ss_pred HHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhh
Q 004347 545 IMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRC 624 (759)
Q Consensus 545 ~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~ 624 (759)
.+..+|...++.+..+||+++..+|..+++.|+.++. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677788889999999999999999999999997443 4799999999999999999999999999999999999999
Q ss_pred hhcC
Q 004347 625 HRIG 628 (759)
Q Consensus 625 ~RiG 628 (759)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 125
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.6e-11 Score=142.60 Aligned_cols=119 Identities=13% Similarity=0.224 Sum_probs=96.6
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
..|+.++.+-+..+.+.|..|||-|.++...+.|..+|...|+++..++.... +.-.++|.+- +....+.|+|..
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~A----G~~g~VTIATNm 625 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAGA----GKLGAVTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHhc----CCCCcEEEeecc
Confidence 46888898888888899999999999999999999999999999999988744 2223444432 222237999999
Q ss_pred ccCCCCCC--------CCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 593 GGLGINLT--------AADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 593 gg~GINL~--------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
+|+|.|+. +.=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 99998875 234788889999999999999999999987664443
No 126
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.46 E-value=1.7e-12 Score=150.18 Aligned_cols=71 Identities=28% Similarity=0.455 Sum_probs=59.5
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE-----eCCC---C---CcchhhHHhh
Q 004347 554 GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL-----YDSD---W---NPQMDLQAMD 622 (759)
Q Consensus 554 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~-----~D~~---w---np~~~~Qa~g 622 (759)
.+.++..|.+++..+|...-+-|.+ +.++| |+||...+.|+||++ ++||+ ||+. | +|....|+.|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~--g~iqv-lvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFAD--GHIQV-LVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhc--CceeE-EEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 4568889999999999999999996 55555 999999999999995 56665 7764 4 6788999999
Q ss_pred hhhhcC
Q 004347 623 RCHRIG 628 (759)
Q Consensus 623 R~~RiG 628 (759)
|++|.+
T Consensus 683 ragrp~ 688 (1674)
T KOG0951|consen 683 RAGRPQ 688 (1674)
T ss_pred hcCCCc
Confidence 999975
No 127
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.46 E-value=7.1e-13 Score=128.91 Aligned_cols=153 Identities=22% Similarity=0.289 Sum_probs=107.5
Q ss_pred chhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCC--ceEE
Q 004347 191 KSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPS--VSAI 267 (759)
Q Consensus 191 rpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~--~~~~ 267 (759)
.|+|.+++.-+.. +.+.++..++|+|||..++..+......+..+.++|++|.. ++.+-..++.+++.. .++.
T Consensus 1 t~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccc
Confidence 4899999988874 78899999999999999876555544444556999999966 667788888888754 6777
Q ss_pred EEeCChhHH-HHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh--hhHHHHHHhc---C
Q 004347 268 IYHGSKKER-DEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP--KCKLLKELKY---I 340 (759)
Q Consensus 268 ~~~g~~~~r-~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~--~s~~~~~l~~---l 340 (759)
.++|..... ...... ....+|+|+|++.+...+.. .+.....++||+||+|.+... .......+.. .
T Consensus 77 ~~~~~~~~~~~~~~~~------~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~ 150 (169)
T PF00270_consen 77 LLHGGQSISEDQREVL------SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF 150 (169)
T ss_dssp EESTTSCHHHHHHHHH------HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT
T ss_pred cccccccccccccccc------cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCC
Confidence 777755422 211111 24689999999999877643 112234799999999999752 2223333333 3
Q ss_pred CCCcEEEEecCCC
Q 004347 341 PIGNKLLLTGTPL 353 (759)
Q Consensus 341 ~~~~rllLTgTPl 353 (759)
+..+.+++||||-
T Consensus 151 ~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 151 KNIQIILLSATLP 163 (169)
T ss_dssp TTSEEEEEESSST
T ss_pred CCCcEEEEeeCCC
Confidence 4567899999996
No 128
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.45 E-value=1.8e-12 Score=130.27 Aligned_cols=156 Identities=24% Similarity=0.250 Sum_probs=109.9
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhC--CCCCCeEEEECCc-cHHHHHHHHHHhCC-
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGN--GLHGPYLVIAPLS-TLSNWVNEISRFVP- 262 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~--~~~~~~LIV~P~s-ll~~W~~E~~~~~p- 262 (759)
..+++||.++++.+.. +.+.+++.++|+|||+.. +.++..+... ....+++||||.. ++.||...+..+..
T Consensus 20 ~~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~ 95 (203)
T cd00268 20 EKPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKH 95 (203)
T ss_pred CCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 3689999999988875 889999999999999884 5555555554 3456799999966 56788888888754
Q ss_pred -CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh--hHHHHHHh
Q 004347 263 -SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKLLKELK 338 (759)
Q Consensus 263 -~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~--s~~~~~l~ 338 (759)
...+..++|........... ....+|+|+|++.+...+.. .+....++++|+||+|.+.+.. ..+...+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~ 169 (203)
T cd00268 96 TNLKVVVIYGGTSIDKQIRKL------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILK 169 (203)
T ss_pred CCceEEEEECCCCHHHHHHHh------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHH
Confidence 56677777766544332211 14678999999988665432 2222357899999999986543 22333344
Q ss_pred cCC-CCcEEEEecCCC
Q 004347 339 YIP-IGNKLLLTGTPL 353 (759)
Q Consensus 339 ~l~-~~~rllLTgTPl 353 (759)
.+. ....+++||||-
T Consensus 170 ~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 170 LLPKDRQTLLFSATMP 185 (203)
T ss_pred hCCcccEEEEEeccCC
Confidence 444 456799999985
No 129
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.44 E-value=6.1e-12 Score=149.17 Aligned_cols=352 Identities=18% Similarity=0.163 Sum_probs=206.7
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC--CCCCeEEEECCccH-HHHHHHHHHhCCC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG--LHGPYLVIAPLSTL-SNWVNEISRFVPS 263 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~--~~~~~LIV~P~sll-~~W~~E~~~~~p~ 263 (759)
+...+++|..++++.......+..++|-++||.|||..++.++.+....+ ...+++.+.|..++ ....+.+..++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 193 EHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred CchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 44568999999999998766665789999999999999988887777654 55688889997655 5566777777655
Q ss_pred ceEEEE--eCChhHHHHHHHhc---C-----CCCCCCCCCEEEecHHHHHHH-HH----HhhhhcCccEEEEcCcccccC
Q 004347 264 VSAIIY--HGSKKERDEIRRKH---M-----PRAIGPKFPIVVTSYEVALSD-AR----KYLRHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 264 ~~~~~~--~g~~~~r~~~~~~~---~-----~~~~~~~~~vvIttye~l~~~-~~----~~l~~~~~~~lIvDEaH~ikn 328 (759)
..+... ||+....-...... . .......+.+.+++....... .. .++..+...++|+||+|-+-.
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 444333 66554432211100 0 000011222333333222221 00 113334557999999999875
Q ss_pred h--hhHHHHHHhcC--CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHH
Q 004347 329 P--KCKLLKELKYI--PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQ 404 (759)
Q Consensus 329 ~--~s~~~~~l~~l--~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~ 404 (759)
. ...+...+..+ .....|++|||+-+ .|...+.
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~----------------------~~~~~l~--------------------- 389 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPP----------------------FLKEKLK--------------------- 389 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCH----------------------HHHHHHH---------------------
Confidence 4 22333333333 36778999999721 1111110
Q ss_pred HHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHH
Q 004347 405 MVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLR 484 (759)
Q Consensus 405 ~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr 484 (759)
..+... +.........|...+..+.. . .+..+.
T Consensus 390 ------~~~~~~---~~~~~~~~~~~~~~e~~~~~----~---~~~~~~------------------------------- 422 (733)
T COG1203 390 ------KALGKG---REVVENAKFCPKEDEPGLKR----K---ERVDVE------------------------------- 422 (733)
T ss_pred ------HHHhcc---cceecccccccccccccccc----c---cchhhh-------------------------------
Confidence 000000 00000000000000000000 0 000000
Q ss_pred HhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCC
Q 004347 485 KNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSV 564 (759)
Q Consensus 485 k~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~ 564 (759)
.+| . ..+......-...|.+|+|-++....+..+...|...+.+++.+||..
T Consensus 423 ---~~~------------------------~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf 474 (733)
T COG1203 423 ---DGP------------------------Q-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRF 474 (733)
T ss_pred ---hhh------------------------h-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 000 0 111222222335789999999999999999999999877899999999
Q ss_pred CHHHHHHHHHHhhcc--CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcC--CCCceEEEEEee
Q 004347 565 RLDERKRQIQDFNDV--NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIG--QTKPVHVYRLAT 640 (759)
Q Consensus 565 ~~~~R~~~i~~F~~~--~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG--Q~k~V~Vyrli~ 640 (759)
+..+|.+.++....- .... .++|+|.+...|+|+. .+.+|- |+ --....+||.|||+|-| ....+.||...-
T Consensus 475 ~~~dR~~ke~~l~~~~~~~~~-~IvVaTQVIEagvDid-fd~mIT-e~-aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 475 TLKDREEKERELKKLFKQNEG-FIVVATQVIEAGVDID-FDVLIT-EL-APIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred chhhHHHHHHHHHHHHhccCC-eEEEEeeEEEEEeccc-cCeeee-cC-CCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 999999988865421 1122 2799999999999987 666653 21 12345789999999999 455588888877
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 004347 641 AQSVEGRILKRAFSKLKLEH 660 (759)
Q Consensus 641 ~~TvEe~i~~~~~~K~~l~~ 660 (759)
.+....+.+.....+..-..
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~ 570 (733)
T COG1203 551 RGPYLKYSYEKLEKKLKSLE 570 (733)
T ss_pred CCCchhhhhhcchhhhcccc
Confidence 77777777776665555433
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=3.7e-11 Score=136.24 Aligned_cols=404 Identities=15% Similarity=0.124 Sum_probs=218.5
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH----HHHHHHHHHh
Q 004347 185 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL----SNWVNEISRF 260 (759)
Q Consensus 185 ~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll----~~W~~E~~~~ 260 (759)
..|-.+++-|+-|...|+ .|.|.=..||.|||+++...+...... ...+-||+|+..| .+|...+-+|
T Consensus 74 ~lg~r~ydvQlig~l~Ll------~G~VaEM~TGEGKTLvA~l~a~l~AL~--G~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 74 TLGLRPFDVQLLGALRLL------AGDVIEMATGEGKTLAGAIAAAGYALQ--GRRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred HcCCCcchHHHHHHHHHh------CCCcccccCCCCHHHHHHHHHHHHHHc--CCCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 456678899998887775 356777889999999987554433333 2578999999887 4588888888
Q ss_pred CCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHH-----HHHHHH---HhhhhcCccEEEEcCcccccChhhH
Q 004347 261 VPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEV-----ALSDAR---KYLRHYNWKYLVVDEGHRLKNPKCK 332 (759)
Q Consensus 261 ~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~-----l~~~~~---~~l~~~~~~~lIvDEaH~ikn~~s~ 332 (759)
+ ++.+.+..+......+ +.. -.++|+.+|-.. ++..+. ...-..++.++||||++.+.=.
T Consensus 146 L-GLsvg~i~~~~~~~er--r~a------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID--- 213 (764)
T PRK12326 146 L-GLTVGWITEESTPEER--RAA------YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD--- 213 (764)
T ss_pred c-CCEEEEECCCCCHHHH--HHH------HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec---
Confidence 7 5666666655433321 111 145677766433 332221 1222346899999999976421
Q ss_pred HHHHHhcCCCCcEEEEecCCC-CCCHHHHHhhhhhccCCC-CC-C------------hHHHHHHhcccCCCCchhhHHHH
Q 004347 333 LLKELKYIPIGNKLLLTGTPL-QNNLAELWSLLHFILPDI-FS-S------------LEEFQSWFDLSGKCNSEVMKEEL 397 (759)
Q Consensus 333 ~~~~l~~l~~~~rllLTgTPl-~n~~~el~sll~fl~p~~-~~-~------------~~~F~~~f~~~~~~~~~~~~~~~ 397 (759)
.++.-+++||.+- ++....++.+..-|.++. |. + .......+........
T Consensus 214 --------eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~------- 278 (764)
T PRK12326 214 --------EALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSE------- 278 (764)
T ss_pred --------cccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCc-------
Confidence 2345688888653 233333444444443321 00 0 0001111110000000
Q ss_pred HHHHHHHHHHHHHHHhh-hHHhhhhhhHHhhhCCCceEEEEEecCC-------HHHHHHHHHHHHH--------------
Q 004347 398 EEKRRGQMVAKLHAILR-PFLLRRMKSDVEQMLPRKKEIILYATMT-------EHQRNFQDHLINK-------------- 455 (759)
Q Consensus 398 ~~~~~~~~~~~L~~il~-p~~lRR~k~dv~~~LP~k~e~~v~~~ls-------~~q~~~y~~l~~~-------------- 455 (759)
......+..+...|+ .+++.|-+.-+. ...+.++--..| .++.-+.+.+-.+
T Consensus 279 --~~~~~~~~~i~~AL~A~~l~~~d~dYiV----~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~As 352 (764)
T PRK12326 279 --EHVGTTLTQVNVALHAHALLQRDVHYIV----RDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDT 352 (764)
T ss_pred --chhHHHHHHHHHHHHHHHHHhcCCcEEE----ECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeeh
Confidence 000011111221121 222333222111 111111111111 1111122221100
Q ss_pred -HHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCC-CchHHHHhhccHHHHHHHHHHHHhhCCCcE
Q 004347 456 -TLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFY-PPVEQIVEQCGKFRLLDRLLARLFARNHKV 533 (759)
Q Consensus 456 -~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~-~~~~~l~~~s~K~~~L~~lL~~l~~~~~kv 533 (759)
+...+++. ...-.++.+........++++.+-+...-.+..+.... .+..-......|+..+.+-+.++.+.|..|
T Consensus 353 IT~QnfFr~--Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPV 430 (764)
T PRK12326 353 ITVQALIGR--YPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPV 430 (764)
T ss_pred hhHHHHHHh--cchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCE
Confidence 00000000 00011112222223344556555543322221110000 000111223458899999998899999999
Q ss_pred EEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCC-------------
Q 004347 534 LVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLT------------- 600 (759)
Q Consensus 534 LIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~------------- 600 (759)
||.+.++...+.|..+|...|+++..++.... ++-.++|.+- +....+-|+|..+|+|.|+.
T Consensus 431 LVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A----G~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~ 505 (764)
T PRK12326 431 LVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA----GKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVA 505 (764)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc----CCCCcEEEEecCCCCccCeecCCCcccchHHHH
Confidence 99999999999999999999999999998755 3334555442 22233799999999999886
Q ss_pred --CCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 601 --AADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 601 --~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
+-=+||.-..+-|--.+.|..||++|.|..-....|
T Consensus 506 ~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 506 ELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred HcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 334788888999999999999999999987665443
No 131
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.39 E-value=5.7e-12 Score=123.07 Aligned_cols=130 Identities=22% Similarity=0.240 Sum_probs=90.3
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCCCCCeEEEECCccH-HHHHHH---HHHhCC
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNE---ISRFVP 262 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E---~~~~~p 262 (759)
..+...|.+.+...+- |...+.-.-.|+|||.. +++.+..+-.....-.+||+|.+..+ .|..+| |.++.|
T Consensus 63 ehpsevqhecipqail----gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP 138 (387)
T KOG0329|consen 63 EHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMP 138 (387)
T ss_pred CCchHhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCC
Confidence 3566789999987775 77778888899999966 45555555443323367999998765 455555 455679
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCccccc
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ik 327 (759)
+.++.++.|...-+..... ..+.++|+|.|++.+..-.++ .|...+.+..|+||++.+.
T Consensus 139 ~vkvaVFfGG~~Ikkdee~------lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 139 SVKVSVFFGGLFIKKDEEL------LKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred CceEEEEEcceeccccHHH------HhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 9999998886543321111 123678999999998766543 4555567899999998764
No 132
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.38 E-value=3.1e-10 Score=122.11 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=101.7
Q ss_pred HHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCC
Q 004347 523 LARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAA 602 (759)
Q Consensus 523 L~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a 602 (759)
+....+.+.|+||-+-...|++-|.+||...|+++..+|.....-+|.++|.+.+.+.-+ +|+....+-+|||++.+
T Consensus 439 I~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLREGLDiPEV 515 (663)
T COG0556 439 IRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLREGLDLPEV 515 (663)
T ss_pred HHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhhccCCCcce
Confidence 334446789999999999999999999999999999999999999999999999974433 58899999999999999
Q ss_pred CEEEEeCCC-----CCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHH
Q 004347 603 DTCILYDSD-----WNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKR 651 (759)
Q Consensus 603 ~~VI~~D~~-----wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~ 651 (759)
..|.++|.+ .+-...+|-||||.|--.-+ |..|-=...++++..|-+.
T Consensus 516 sLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gk-vIlYAD~iT~sM~~Ai~ET 568 (663)
T COG0556 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGK-VILYADKITDSMQKAIDET 568 (663)
T ss_pred eEEEEeecCccccccccchHHHHHHHHhhccCCe-EEEEchhhhHHHHHHHHHH
Confidence 999999987 47788999999999953322 4444333334566666443
No 133
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.38 E-value=1.5e-11 Score=128.92 Aligned_cols=220 Identities=21% Similarity=0.241 Sum_probs=137.2
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCC---------cchhHHHHHHHHHHHhcCChhhhhhhccCC--C
Q 004347 433 KEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGR---------GMKGKLNNLMVQLRKNCNHPDLLESAFSDS--C 501 (759)
Q Consensus 433 ~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~--~ 501 (759)
.++.+.++|+..|+.+|+.++......+...-...... .....+..++.+|+.+|+||+|+...+.+. .
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 36778899999999999999876555444332111111 122566778889999999999987776543 2
Q ss_pred CCCchHHHHhhccHHHHHHHHHHHH-----hhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHH---
Q 004347 502 FYPPVEQIVEQCGKFRLLDRLLARL-----FARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQI--- 573 (759)
Q Consensus 502 ~~~~~~~l~~~s~K~~~L~~lL~~l-----~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i--- 573 (759)
...+.+.+...|||+.+|.+++..+ ...+.+++|.|+...++|+|+.+|..+++.|-|++|..-..+....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 3456778899999999999999999 66788999999999999999999999999999999976544433322
Q ss_pred ---------HHh-hccCCCceEEEEecccccCC----CCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEe
Q 004347 574 ---------QDF-NDVNSSYRIFLLSTRAGGLG----INLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLA 639 (759)
Q Consensus 574 ---------~~F-~~~~~~~~v~LlsT~agg~G----INL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli 639 (759)
... ..+...+.|+|++|+-.... ++-...|.||-||+.+++....-..-|...-.+ +.+-|+||+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv 242 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLV 242 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEe
Confidence 111 11234667788887755442 334477899999999999886544444433333 889999999
Q ss_pred eCCCHHHHHHHHHH
Q 004347 640 TAQSVEGRILKRAF 653 (759)
Q Consensus 640 ~~~TvEe~i~~~~~ 653 (759)
..+|+|.-++..-.
T Consensus 243 ~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 243 PSNSIEHIELCFPK 256 (297)
T ss_dssp ETTSHHHHHHHHTT
T ss_pred eCCCHHHHHHHccC
Confidence 99999998876544
No 134
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.32 E-value=1.3e-10 Score=131.83 Aligned_cols=143 Identities=20% Similarity=0.255 Sum_probs=100.6
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH-HHHHHHHhCCCce
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN-WVNEISRFVPSVS 265 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~-W~~E~~~~~p~~~ 265 (759)
.-.|-++|++++..|.. |...++|.-|-.|||+.|=..|+.-..+ ..+++.-+|-..++| =.++|+.-+.+..
T Consensus 295 pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAialaq~h--~TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALAQKH--MTRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred CCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHHHhh--ccceEecchhhhhccchHHHHHHhccccc
Confidence 34788999999977754 8899999999999999965444433232 247888899777766 4467877775554
Q ss_pred EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH---HhhhhcCccEEEEcCcccccChh-hHHHHHHhcCC
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR---KYLRHYNWKYLVVDEGHRLKNPK-CKLLKELKYIP 341 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~---~~l~~~~~~~lIvDEaH~ikn~~-s~~~~~l~~l~ 341 (759)
+.+|+-+ +.+...++|+|-+++++-+- ..++. ...||+||.|.+.+.. .-.|..+--+-
T Consensus 369 --LlTGDvq-------------inPeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~eRGvVWEEViIMl 431 (1248)
T KOG0947|consen 369 --LLTGDVQ-------------INPEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDVERGVVWEEVIIML 431 (1248)
T ss_pred --eeeccee-------------eCCCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeecccccccccceeeeeec
Confidence 6666542 33677899999999876541 23343 5789999999997633 34555554443
Q ss_pred C--CcEEEEecCC
Q 004347 342 I--GNKLLLTGTP 352 (759)
Q Consensus 342 ~--~~rllLTgTP 352 (759)
. -..|+||||-
T Consensus 432 P~HV~~IlLSATV 444 (1248)
T KOG0947|consen 432 PRHVNFILLSATV 444 (1248)
T ss_pred cccceEEEEeccC
Confidence 3 3459999994
No 135
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.27 E-value=2.8e-10 Score=134.08 Aligned_cols=160 Identities=19% Similarity=0.260 Sum_probs=109.9
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHH-HHHHHHHHhCCCc
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLS-NWVNEISRFVPSV 264 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~-~W~~E~~~~~p~~ 264 (759)
.+..|-|+|.+++.-+- .+.+.+++..||+|||+.+-.+++.-..+|. ++...+|.-.++ |=.++|..-+..+
T Consensus 116 ~~F~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~q--rviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 116 YPFELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDGQ--RVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCCCcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcCC--ceEeccchhhhhhhHHHHHHHHhhhh
Confidence 46689999999997774 4899999999999999998877776666543 599999955554 4556665555322
Q ss_pred --eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh-hHHHHHH-hc
Q 004347 265 --SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK-CKLLKEL-KY 339 (759)
Q Consensus 265 --~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~-s~~~~~l-~~ 339 (759)
-+-+++|+. ...++..|+|+|-+++++-+.. .........||+||.|.+.... ...+..+ ..
T Consensus 190 ~~~vGL~TGDv-------------~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~ 256 (1041)
T COG4581 190 ADMVGLMTGDV-------------SINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL 256 (1041)
T ss_pred hhhccceecce-------------eeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHh
Confidence 234555544 2346778999888988665421 1112245789999999998543 3344443 34
Q ss_pred CCCC-cEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcc
Q 004347 340 IPIG-NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDL 384 (759)
Q Consensus 340 l~~~-~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~ 384 (759)
++.. +.++||||- ++..+|..|+..
T Consensus 257 lP~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 257 LPDHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred cCCCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 4433 779999993 455678888853
No 136
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=7e-10 Score=128.97 Aligned_cols=119 Identities=16% Similarity=0.189 Sum_probs=97.8
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
..|+.++.+-+..+.+.|..|||-+.++...+.|..+|...|+++-.++.... +.-.+++.+ .+..+ .+-|+|..
T Consensus 432 ~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~--AG~~G--aVTIATNM 506 (913)
T PRK13103 432 EEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ--AGRPG--ALTIATNM 506 (913)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc--CCCCC--cEEEeccC
Confidence 46999999999999999999999999999999999999999999988887654 233444442 33233 37999999
Q ss_pred ccCCCCCC-------------------------------------CCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEE
Q 004347 593 GGLGINLT-------------------------------------AADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHV 635 (759)
Q Consensus 593 gg~GINL~-------------------------------------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 635 (759)
+|+|-|+. +-=+||.-..+-|--.+.|..||++|.|..-....
T Consensus 507 AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 507 AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 99999985 33478888999999999999999999998776554
Q ss_pred E
Q 004347 636 Y 636 (759)
Q Consensus 636 y 636 (759)
|
T Consensus 587 ~ 587 (913)
T PRK13103 587 Y 587 (913)
T ss_pred E
Confidence 4
No 137
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=1.8e-09 Score=124.30 Aligned_cols=120 Identities=13% Similarity=0.178 Sum_probs=98.4
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
...|+..+.+-+.++.+.|..|||.|.++...+.|..+|...|+++..++.... ++...|=. +.+ ....+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG--~~GaVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAG--QKGAITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCC--CCCeEEEecc
Confidence 346899999989988899999999999999999999999999999999998754 34333322 333 2334799999
Q ss_pred cccCCCCCCCCC--------EEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 592 AGGLGINLTAAD--------TCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 592 agg~GINL~~a~--------~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
.+|+|.|+.-.. +||....+-|--.+.|..||++|.|..-....|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999987443 899999999999999999999999987765544
No 138
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.20 E-value=2.9e-10 Score=118.73 Aligned_cols=96 Identities=23% Similarity=0.366 Sum_probs=87.9
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcC---ceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKG---YEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTC 605 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~V 605 (759)
.-+|.||||....-.|-|++++..+| +.++.++|.-++.+|.+.++.|...+-. |||+|+++++||++++...+
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFM 580 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceE
Confidence 45789999999999999999999874 6889999999999999999999985555 89999999999999999999
Q ss_pred EEeCCCCCcchhhHHhhhhhhc
Q 004347 606 ILYDSDWNPQMDLQAMDRCHRI 627 (759)
Q Consensus 606 I~~D~~wnp~~~~Qa~gR~~Ri 627 (759)
|+...|-.-+.|.+||||++|.
T Consensus 581 invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEEecCcccchhhhhhhccchh
Confidence 9999999999999999988874
No 139
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.16 E-value=1.4e-08 Score=123.29 Aligned_cols=88 Identities=19% Similarity=0.324 Sum_probs=62.1
Q ss_pred HHHHHHHH-hhCCCcEEEEccchhHHHHHHHHHHh----cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccc
Q 004347 519 LDRLLARL-FARNHKVLVFSQWTKILDIMEYYFNE----KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAG 593 (759)
Q Consensus 519 L~~lL~~l-~~~~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ag 593 (759)
+.+.+.++ ...+.++|||+.+..+++.+...|.. .++++ +..+.. ..|.+++++|..++.. +|++|...
T Consensus 662 ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~---iLlgt~sf 735 (850)
T TIGR01407 662 IASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKA---ILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCe---EEEEccee
Confidence 33344333 23567899999999999999988875 34443 333333 4789999999974433 68889999
Q ss_pred cCCCCCCCC--CEEEEeCCCC
Q 004347 594 GLGINLTAA--DTCILYDSDW 612 (759)
Q Consensus 594 g~GINL~~a--~~VI~~D~~w 612 (759)
.+|||+++. ..||+.-.|+
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred ecccccCCCceEEEEEeCCCC
Confidence 999999854 4667766665
No 140
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.13 E-value=1.5e-08 Score=116.79 Aligned_cols=133 Identities=23% Similarity=0.314 Sum_probs=94.5
Q ss_pred ccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhC
Q 004347 183 SLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFV 261 (759)
Q Consensus 183 ~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~ 261 (759)
.-..|..|...|.--...++ . |.+--+..+||+|||.-.+.+..++...| ++.+||+|+.+| .|-.+-+.++.
T Consensus 76 ~k~~G~~~ws~QR~WakR~~---r-g~SFaiiAPTGvGKTTfg~~~sl~~a~kg--kr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 76 KKATGFRPWSAQRVWAKRLV---R-GKSFAIIAPTGVGKTTFGLLMSLYLAKKG--KRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred HHhhCCCchHHHHHHHHHHH---c-CCceEEEcCCCCchhHHHHHHHHHHHhcC--CeEEEEecCHHHHHHHHHHHHHHH
Confidence 44456789999986444444 3 55544556799999987776666666655 799999998765 67777788876
Q ss_pred C-----CceEEEEeCCh--hHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 262 P-----SVSAIIYHGSK--KERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 262 p-----~~~~~~~~g~~--~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
+ ...++ ||+.- .++..... +...++|+|+|||-..+...+ ..|.+++|++++||.++-+.
T Consensus 150 e~~~~~~~~~~-yh~~l~~~ekee~le----~i~~gdfdIlitTs~FL~k~~-e~L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 150 EDAGSLDVLVV-YHSALPTKEKEEALE----RIESGDFDILITTSQFLSKRF-EELSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred hhcCCcceeee-eccccchHHHHHHHH----HHhcCCccEEEEeHHHHHhhH-HHhcccCCCEEEEccHHHHH
Confidence 3 23333 88863 33332222 234478999999999999887 56777999999999999763
No 141
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.06 E-value=2.9e-08 Score=114.88 Aligned_cols=375 Identities=17% Similarity=0.168 Sum_probs=202.5
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC-CccHHHHHHHHHHhCCCceE
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP-LSTLSNWVNEISRFVPSVSA 266 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P-~sll~~W~~E~~~~~p~~~~ 266 (759)
..|-+-|..++.-+..........+|.-.||+|||-.-+.+|...+..| +-+||++| -++..|....|...++ ..+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G--kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG--KQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC--CEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 4688899999999987542233458888999999999888888888876 68999999 5678898888888886 777
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccc--cChh------hHHHHHHh
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRL--KNPK------CKLLKELK 338 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~i--kn~~------s~~~~~l~ 338 (759)
.++|+.-....+... +.+...+...|||-|...+. +...+..+|||||=|-- |..+ ..+.....
T Consensus 274 ~vlHS~Ls~~er~~~--W~~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra 345 (730)
T COG1198 274 AVLHSGLSPGERYRV--WRRARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA 345 (730)
T ss_pred hhhcccCChHHHHHH--HHHHhcCCceEEEEechhhc------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHH
Confidence 777775443332111 11223467889999988543 22335689999999964 3222 12222223
Q ss_pred cCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHh
Q 004347 339 YIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 418 (759)
Q Consensus 339 ~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~l 418 (759)
+...-..++-||||- ++.++...+ .. +. .-.+.+.+
T Consensus 346 ~~~~~pvvLgSATPS---LES~~~~~~---g~-y~-~~~L~~R~------------------------------------ 381 (730)
T COG1198 346 KKENAPVVLGSATPS---LESYANAES---GK-YK-LLRLTNRA------------------------------------ 381 (730)
T ss_pred HHhCCCEEEecCCCC---HHHHHhhhc---Cc-eE-EEEccccc------------------------------------
Confidence 344556789999993 333222210 00 00 00000000
Q ss_pred hhhhhHHhhhCCCceEEEEEecCCHHHHH----HHHHHHHHHHHHHHHHh---hhhcCCcchhHHHHHHHHHHHhcCChh
Q 004347 419 RRMKSDVEQMLPRKKEIILYATMTEHQRN----FQDHLINKTLENHLREK---VFSAGRGMKGKLNNLMVQLRKNCNHPD 491 (759)
Q Consensus 419 RR~k~dv~~~LP~k~e~~v~~~ls~~q~~----~y~~l~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~Lrk~~~hp~ 491 (759)
. ...+|... .++|...... +-..+++........+. .+...++... . -+-+.|.|.
T Consensus 382 ---~---~a~~p~v~----iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~-----~-l~C~~Cg~v- 444 (730)
T COG1198 382 ---G---RARLPRVE----IIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAP-----L-LLCRDCGYI- 444 (730)
T ss_pred ---c---ccCCCcce----EEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccc-----e-eecccCCCc-
Confidence 0 00122211 1112111110 00111111110110000 0000011000 0 011112221
Q ss_pred hhhhhccCCCCC---CchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc--CceEEEEeCCCCH
Q 004347 492 LLESAFSDSCFY---PPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK--GYEVCRIDGSVRL 566 (759)
Q Consensus 492 l~~~~~~~~~~~---~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~ 566 (759)
+.-+.++.... ....-.+..||.-.- +-..+-+-|...|+++-. -...+++.|... +.+++++|++++.
T Consensus 445 -~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~---~p~~Cp~Cgs~~L~~~G~--GterieeeL~~~FP~~rv~r~d~Dtt~ 518 (730)
T COG1198 445 -AECPNCDSPLTLHKATGQLRCHYCGYQEP---IPQSCPECGSEHLRAVGP--GTERIEEELKRLFPGARIIRIDSDTTR 518 (730)
T ss_pred -ccCCCCCcceEEecCCCeeEeCCCCCCCC---CCCCCCCCCCCeeEEecc--cHHHHHHHHHHHCCCCcEEEEcccccc
Confidence 11111111100 000011122221100 000011123445555432 245566666554 7899999998875
Q ss_pred HH--HHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCC------------CcchhhHHhhhhhhcCCCCc
Q 004347 567 DE--RKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDW------------NPQMDLQAMDRCHRIGQTKP 632 (759)
Q Consensus 567 ~~--R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~w------------np~~~~Qa~gR~~RiGQ~k~ 632 (759)
.. -...+..|.++..+ |||.|....-|.|+++...|.+.|.|- ..+.+.|..||++|-+-.-.
T Consensus 519 ~k~~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~ 595 (730)
T COG1198 519 RKGALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGE 595 (730)
T ss_pred chhhHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCe
Confidence 33 46789999986666 699999999999999999998877652 23445799999999887777
Q ss_pred eEEEEEeeCCC
Q 004347 633 VHVYRLATAQS 643 (759)
Q Consensus 633 V~Vyrli~~~T 643 (759)
|.|-.+.....
T Consensus 596 VvIQT~~P~hp 606 (730)
T COG1198 596 VVIQTYNPDHP 606 (730)
T ss_pred EEEEeCCCCcH
Confidence 77776666654
No 142
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.02 E-value=8.6e-09 Score=114.63 Aligned_cols=141 Identities=20% Similarity=0.290 Sum_probs=94.5
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhCCCCCCeEEEECCccHHH-HHHHHHHhCCCce
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNGLHGPYLVIAPLSTLSN-WVNEISRFVPSVS 265 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~~~~~~~LIV~P~sll~~-W~~E~~~~~p~~~ 265 (759)
-+|-|+|..+|.-+ .++...++..-|..|||+.|- |++..|+.+ .+++.-.|-..|+| =.+|+..=+. .
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~EF~--D 198 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEEFK--D 198 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHHhc--c
Confidence 36888998877544 668889999999999999864 555566665 48999999666655 4566655443 3
Q ss_pred EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH---HhhhhcCccEEEEcCcccccChhhH-HHHH-HhcC
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR---KYLRHYNWKYLVVDEGHRLKNPKCK-LLKE-LKYI 340 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~---~~l~~~~~~~lIvDEaH~ikn~~s~-~~~~-l~~l 340 (759)
|.+.+|+- .+.+...++|+|-+++++-+- ..++.+ ..||+||.|.++..... .|.. +--+
T Consensus 199 VGLMTGDV-------------TInP~ASCLVMTTEILRsMLYRGSEvmrEV--aWVIFDEIHYMRDkERGVVWEETIIll 263 (1041)
T KOG0948|consen 199 VGLMTGDV-------------TINPDASCLVMTTEILRSMLYRGSEVMREV--AWVIFDEIHYMRDKERGVVWEETIILL 263 (1041)
T ss_pred cceeecce-------------eeCCCCceeeeHHHHHHHHHhccchHhhee--eeEEeeeehhccccccceeeeeeEEec
Confidence 44555543 234677899999998876541 345555 45999999999864322 2222 1222
Q ss_pred C-CCcEEEEecCC
Q 004347 341 P-IGNKLLLTGTP 352 (759)
Q Consensus 341 ~-~~~rllLTgTP 352 (759)
+ ..+-++||||-
T Consensus 264 P~~vr~VFLSATi 276 (1041)
T KOG0948|consen 264 PDNVRFVFLSATI 276 (1041)
T ss_pred cccceEEEEeccC
Confidence 3 34558999993
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.00 E-value=5.1e-08 Score=113.22 Aligned_cols=84 Identities=8% Similarity=0.152 Sum_probs=67.7
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCC-HHHHHHHHHHhhccCCCceEEEEecc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR-LDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~-~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
..|+.++.+-+....+.|..|||-|.++...+.|..+|...|+++-.++.... .+.-.++|.+ .+..+ .+-|+|.
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIATN 482 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEecc
Confidence 35888888888888899999999999999999999999999999999999743 3444556654 22222 3799999
Q ss_pred cccCCCCCC
Q 004347 592 AGGLGINLT 600 (759)
Q Consensus 592 agg~GINL~ 600 (759)
.+|+|.|+.
T Consensus 483 MAGRGTDI~ 491 (870)
T CHL00122 483 MAGRGTDII 491 (870)
T ss_pred ccCCCcCee
Confidence 999998864
No 144
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.95 E-value=2.6e-08 Score=117.48 Aligned_cols=150 Identities=17% Similarity=0.235 Sum_probs=96.0
Q ss_pred HhhccHHHHHHHHHHHHhhC---------CCcEEEEccchhHHHHHHHHHHhcCc-----eEE--------EEeCCCCH-
Q 004347 510 VEQCGKFRLLDRLLARLFAR---------NHKVLVFSQWTKILDIMEYYFNEKGY-----EVC--------RIDGSVRL- 566 (759)
Q Consensus 510 ~~~s~K~~~L~~lL~~l~~~---------~~kvLIFsq~~~~ld~L~~~L~~~g~-----~~~--------~l~G~~~~- 566 (759)
.+..+|+..|.++|.++... +.+|||||++..++..|.++|...++ .+. ...|..+.
T Consensus 266 lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~~~~~~~~~~fm~~~l~~y~~~~~~~~k~ 345 (814)
T TIGR00596 266 LEENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTTSNKKRGSRAFLLNKLRWYRKWREETSKL 345 (814)
T ss_pred cccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhhhhhh
Confidence 45789999999999876543 46899999999999999998865222 111 00011100
Q ss_pred ----------------------------H--HH-----HHHHHHhhccCCC-ce------EE------------------
Q 004347 567 ----------------------------D--ER-----KRQIQDFNDVNSS-YR------IF------------------ 586 (759)
Q Consensus 567 ----------------------------~--~R-----~~~i~~F~~~~~~-~~------v~------------------ 586 (759)
. .| +..+.+|+.++.+ .. ++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krrr~rG~s~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 425 (814)
T TIGR00596 346 AKEVQSQDTFPENASSNVNKTFRKEQVPTKRRRVRGGSEVAVEKLRNANTNDMQHFEEDHELEEEGDDLEDGPAQEINAA 425 (814)
T ss_pred hHhhhhccccccccccccccccccccccccccccccchhHHHhhhcccccccccccchhhhhhhhhhhhccccccccccc
Confidence 0 00 1125666443221 00 11
Q ss_pred ----EEecccccCCCCCCC----------------------C----------CEEEEeCCCCCcchhhH--HhhhhhhcC
Q 004347 587 ----LLSTRAGGLGINLTA----------------------A----------DTCILYDSDWNPQMDLQ--AMDRCHRIG 628 (759)
Q Consensus 587 ----LlsT~agg~GINL~~----------------------a----------~~VI~~D~~wnp~~~~Q--a~gR~~RiG 628 (759)
.++|..+.+|+|... + +.||+|||.-...+-+| +-||.+|
T Consensus 426 ~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r-- 503 (814)
T TIGR00596 426 NDSKIFEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLR-- 503 (814)
T ss_pred cccccccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCC--
Confidence 145667778898887 4 89999999877776666 4444333
Q ss_pred CCCceEEEEEeeCCCHHHHHHHHHHHHHH-HHHHHhc
Q 004347 629 QTKPVHVYRLATAQSVEGRILKRAFSKLK-LEHVVIG 664 (759)
Q Consensus 629 Q~k~V~Vyrli~~~TvEe~i~~~~~~K~~-l~~~vi~ 664 (759)
+++||.|++.+|+||.-|-...+|.+ .+..+|.
T Consensus 504 ---~~rVyfL~y~~S~EEq~yl~sirrEK~AFe~LIr 537 (814)
T TIGR00596 504 ---PLRVYFLYYGGSIEEQRYLTSLRREKDAFTKLIR 537 (814)
T ss_pred ---CcEEEEEEECCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999987766665554 3444554
No 145
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.94 E-value=4.9e-08 Score=100.72 Aligned_cols=235 Identities=18% Similarity=0.186 Sum_probs=140.9
Q ss_pred ccCCccchhHHHHHHHHHHHhhc------CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHH
Q 004347 185 LTGGKLKSYQLKGVKWLISLWQN------GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 258 (759)
Q Consensus 185 ~~~~~LrpyQ~~gv~~l~~~~~~------~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~ 258 (759)
...+.|-.-|+++|-+....+.. +.+-+|+|.+|.||.-|+.++|..-..+|..+++.|-+...+...-.+.+.
T Consensus 33 ~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 33 IDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred HhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHH
Confidence 45678999999999999887653 556699999999999999999988888887666666666777776667776
Q ss_pred HhCCC-ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH------Hhhhh------cCc-cEEEEcCcc
Q 004347 259 RFVPS-VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR------KYLRH------YNW-KYLVVDEGH 324 (759)
Q Consensus 259 ~~~p~-~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~------~~l~~------~~~-~~lIvDEaH 324 (759)
..... +.+..+..-+ . .....-+..|+.+||..+..... ..|.. ..| .+||+||||
T Consensus 113 DIG~~~i~v~~l~~~~-------~---~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH 182 (303)
T PF13872_consen 113 DIGADNIPVHPLNKFK-------Y---GDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH 182 (303)
T ss_pred HhCCCcccceechhhc-------c---CcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch
Confidence 55322 1111111100 0 01112355799999999887631 11111 112 489999999
Q ss_pred cccChhh------HHHHHH----hcCCCCcEEEEecCCCCC--CHHHHHhhhhhccC-CCCCChHHHHHHhcccCCCCch
Q 004347 325 RLKNPKC------KLLKEL----KYIPIGNKLLLTGTPLQN--NLAELWSLLHFILP-DIFSSLEEFQSWFDLSGKCNSE 391 (759)
Q Consensus 325 ~ikn~~s------~~~~~l----~~l~~~~rllLTgTPl~n--~~~el~sll~fl~p-~~~~~~~~F~~~f~~~~~~~~~ 391 (759)
+.+|..+ +...+. ..++..+.+..|||.... |+. +++-|.+-.+ ..|.+..+|.......+.
T Consensus 183 ~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~Nma-Ym~RLGLWG~gtpf~~~~~f~~a~~~gGv---- 257 (303)
T PF13872_consen 183 KAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPRNMA-YMSRLGLWGPGTPFPDFDDFLEAMEKGGV---- 257 (303)
T ss_pred hcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCceee-eeeeccccCCCCCCCCHHHHHHHHHhcCc----
Confidence 9998654 344443 345667789999998743 322 1111111111 124556666555432211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh--hhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHH
Q 004347 392 VMKEELEEKRRGQMVAKLHAIL--RPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDH 451 (759)
Q Consensus 392 ~~~~~~~~~~~~~~~~~L~~il--~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~ 451 (759)
...+.+..-| +...++|.. .+-.-...++.+++|+.|..+|+.
T Consensus 258 ------------~amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 258 ------------GAMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred ------------hHHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 1111111111 123334332 233344577889999999999974
No 146
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.91 E-value=4.9e-07 Score=108.54 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=60.3
Q ss_pred HHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCC
Q 004347 521 RLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLT 600 (759)
Q Consensus 521 ~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~ 600 (759)
+.+..+...+.+++|+..+..++..+...|....++. ...|... .|.+++++|+.++.. +|+.|....+|||++
T Consensus 638 ~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGVD~p 711 (820)
T PRK07246 638 KRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGVDFV 711 (820)
T ss_pred HHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCCCCC
Confidence 3333334457788888888888888888887655544 5556433 356789999974344 688889999999996
Q ss_pred --CCCEEEEeCCCC
Q 004347 601 --AADTCILYDSDW 612 (759)
Q Consensus 601 --~a~~VI~~D~~w 612 (759)
.+..||+.-.|+
T Consensus 712 ~~~~~~viI~kLPF 725 (820)
T PRK07246 712 QADRMIEVITRLPF 725 (820)
T ss_pred CCCeEEEEEecCCC
Confidence 456667766553
No 147
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.86 E-value=4.2e-07 Score=101.37 Aligned_cols=111 Identities=22% Similarity=0.325 Sum_probs=81.8
Q ss_pred cEEEEccchhHHHHHHHHHHhc----Cc----eEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCC
Q 004347 532 KVLVFSQWTKILDIMEYYFNEK----GY----EVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAAD 603 (759)
Q Consensus 532 kvLIFsq~~~~ld~L~~~L~~~----g~----~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~ 603 (759)
-+|||-.-...++.....|... +- -+..++|+++.++..++ |.....+.+-+++||..+...|.+.+..
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 5899988877766666666543 21 24678999998776655 6554556777899999999999999998
Q ss_pred EEEEe----CCCCCcc-----------hhhHHhhhhhhcCCCCceEEEEEeeCCCHH
Q 004347 604 TCILY----DSDWNPQ-----------MDLQAMDRCHRIGQTKPVHVYRLATAQSVE 645 (759)
Q Consensus 604 ~VI~~----D~~wnp~-----------~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvE 645 (759)
.||=- -..|||. .-.||.-|++|.|.+.|..+|||+++.-++
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 88621 1124552 335788888888889999999999988663
No 148
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.86 E-value=3e-08 Score=107.35 Aligned_cols=101 Identities=25% Similarity=0.301 Sum_probs=80.3
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCc-eEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEE
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGY-EVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCI 606 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~-~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI 606 (759)
..|+-|+-||.- -+-.+...+..+|. .+++|.|+.+++.|...-..||++++++.| |++|+|.|.|+||. .++||
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeecccccccccc-eeEEE
Confidence 368888888753 23334455556655 499999999999999999999998888877 99999999999985 78999
Q ss_pred EeCCC---------CCcchhhHHhhhhhhcCCCCc
Q 004347 607 LYDSD---------WNPQMDLQAMDRCHRIGQTKP 632 (759)
Q Consensus 607 ~~D~~---------wnp~~~~Qa~gR~~RiGQ~k~ 632 (759)
+|+.- -......|--|||+|.|..-+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 98864 334456799999999987655
No 149
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.85 E-value=9.4e-08 Score=109.34 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHH-HHh-CCCceEEE
Q 004347 192 SYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEI-SRF-VPSVSAII 268 (759)
Q Consensus 192 pyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~-~~~-~p~~~~~~ 268 (759)
.+|.+-+ .....+...+|..++-.|||..+--++....+....+-++.|+|+- ++.|-..++ .+| ++.+...+
T Consensus 514 ~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 514 EWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred HHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 4666533 3345677889999999999999988888887777788999999955 555544454 333 23222211
Q ss_pred -EeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH------HhhhhcCccEEEEcCcccccChh-hHHHHHHhcC
Q 004347 269 -YHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR------KYLRHYNWKYLVVDEGHRLKNPK-CKLLKELKYI 340 (759)
Q Consensus 269 -~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~------~~l~~~~~~~lIvDEaH~ikn~~-s~~~~~l~~l 340 (759)
..|+-. +.... ..-.++|.||-++.+-.-+. .+.. +..|+|+||.|.+.|.. ..++..+-.+
T Consensus 590 sl~g~lt-----qEYsi---np~nCQVLITvPecleslLlspp~~q~~ce--rIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 590 SLLGDLT-----QEYSI---NPWNCQVLITVPECLESLLLSPPHHQKFCE--RIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred hhHhhhh-----HHhcC---CchhceEEEEchHHHHHHhcCchhhhhhhh--cceEEEechhhhccccccchHHHHHHHh
Confidence 122111 11111 12267899999997755431 1222 35799999999998754 5566666677
Q ss_pred CCCcEEEEecCCCCCCHHHHHhhhh
Q 004347 341 PIGNKLLLTGTPLQNNLAELWSLLH 365 (759)
Q Consensus 341 ~~~~rllLTgTPl~n~~~el~sll~ 365 (759)
-.-..|+|||| ++|+..++..++
T Consensus 660 i~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 660 IPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred cCCCeeEEecc--cCCHHHHHHHHH
Confidence 77778999999 678888777776
No 150
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.84 E-value=1.6e-07 Score=103.75 Aligned_cols=129 Identities=21% Similarity=0.321 Sum_probs=86.1
Q ss_pred cEEEEccchh----HHHHHHHHHHhc------CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCC
Q 004347 532 KVLVFSQWTK----ILDIMEYYFNEK------GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTA 601 (759)
Q Consensus 532 kvLIFsq~~~----~ld~L~~~L~~~------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~ 601 (759)
-+|||-.-.. +.++|...|... ++.+..|...++..-..++ |+...++++-++++|..+...|.+++
T Consensus 565 dilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~g 641 (1042)
T KOG0924|consen 565 DILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPG 641 (1042)
T ss_pred CEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecc
Confidence 4677754322 345555554432 6778888888887655554 66556778888999999999999999
Q ss_pred CCEEEEeCC----CCCcc-----------hhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHH---HHHHHHHHHHHh
Q 004347 602 ADTCILYDS----DWNPQ-----------MDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKR---AFSKLKLEHVVI 663 (759)
Q Consensus 602 a~~VI~~D~----~wnp~-----------~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~---~~~K~~l~~~vi 663 (759)
...||=-.. -+||. .-.+|.-|++|.|.+.|-..||++|+.+....++.. -..+.++.+.|+
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVL 721 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVL 721 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHH
Confidence 999984221 23433 234556677777778899999999999877766532 123444555544
No 151
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.1e-07 Score=109.45 Aligned_cols=113 Identities=20% Similarity=0.333 Sum_probs=80.9
Q ss_pred CCcEEEEccchhHHHHHHHHHHh----cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEE
Q 004347 530 NHKVLVFSQWTKILDIMEYYFNE----KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTC 605 (759)
Q Consensus 530 ~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~V 605 (759)
..-+|||-.-...++.....|.. ....++-++|.++.++..++ |+....+.+-+++||..+..+|++.++..|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45799999888888888888776 35789999999999887775 554334445479999999999999999998
Q ss_pred EEeC----CCCCcchhh-----------HHhhhhhhcCCCCceEEEEEeeCCCHH
Q 004347 606 ILYD----SDWNPQMDL-----------QAMDRCHRIGQTKPVHVYRLATAQSVE 645 (759)
Q Consensus 606 I~~D----~~wnp~~~~-----------Qa~gR~~RiGQ~k~V~Vyrli~~~TvE 645 (759)
|=-. .-|||..-. .|.-|++|.|.+.+=..|||++++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 7311 123333221 233344444557788999999986555
No 152
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=1.8e-06 Score=100.40 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=68.1
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCC-CCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGS-VRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~-~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
..|+.++.+-+.++.+.|..|||-|.+....+.|...|...|+++..++.. ...+.-.++|.+ .+..+ .+-|+|.
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIATN 497 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIATN 497 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEecc
Confidence 468999998888888999999999999999999999999999999999997 333444455554 22222 3799999
Q ss_pred cccCCCCCC
Q 004347 592 AGGLGINLT 600 (759)
Q Consensus 592 agg~GINL~ 600 (759)
.+|+|-|+.
T Consensus 498 MAGRGTDIk 506 (939)
T PRK12902 498 MAGRGTDII 506 (939)
T ss_pred CCCCCcCEe
Confidence 999997764
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=5.6e-07 Score=105.66 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=97.6
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
..|+.++.+-+..+.+.|..|||-+.++..-+.|..+|..+|+++-.++..... .-.++|.+= +..+ .+-|+|..
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~-~EAeIVA~A--G~~G--aVTIATNM 685 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQ-KEAEIVAEA--GQPG--TVTIATNM 685 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchh-hHHHHHHhc--CCCC--cEEEeccC
Confidence 358999999999999999999999999999999999999999999988886552 223444432 2222 37999999
Q ss_pred ccCCCCCC--------CCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 593 GGLGINLT--------AADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 593 gg~GINL~--------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
+|+|-|+. +.=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 99999986 456888889999999999999999999987664433
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=9.3e-07 Score=105.34 Aligned_cols=74 Identities=18% Similarity=0.127 Sum_probs=58.5
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHH-HHHhCCCCCCeEEEECCc-cHHHHHHHHHH
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLA-HLKGNGLHGPYLVIAPLS-TLSNWVNEISR 259 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~-~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~ 259 (759)
....+||.|.+.+..++....++.++++-.+||+|||+.+++... +....+...++++++.++ -+.|-.+|+++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 344679999999999999999999999999999999998775543 333344445677777755 57889999988
No 155
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.79 E-value=1.3e-07 Score=114.83 Aligned_cols=159 Identities=19% Similarity=0.159 Sum_probs=102.6
Q ss_pred ccchhHHHHHHHHHH-----Hh-----hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHH
Q 004347 189 KLKSYQLKGVKWLIS-----LW-----QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEI 257 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~-----~~-----~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~ 257 (759)
..|+||.-...+.+. .. ..+.+|++-|-+|+|||++++-++..+........++||+-.. |-.|-.++|
T Consensus 244 ~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f 323 (962)
T COG0610 244 VKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEF 323 (962)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHH
Confidence 667777665555443 11 2346799999999999999998888888875556678888855 457888889
Q ss_pred HHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh---hhhcCccEEEEcCcccccChhhHHH
Q 004347 258 SRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY---LRHYNWKYLVVDEGHRLKNPKCKLL 334 (759)
Q Consensus 258 ~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~---l~~~~~~~lIvDEaH~ikn~~s~~~ 334 (759)
..+........ ...+...+++..-. ....|||||.+.+....... ....+.-+||+|||||--. ..+.
T Consensus 324 ~~~~~~~~~~~---~~~s~~~Lk~~l~~----~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--G~~~ 394 (962)
T COG0610 324 QSFGKVAFNDP---KAESTSELKELLED----GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--GELA 394 (962)
T ss_pred HHHHHhhhhcc---cccCHHHHHHHHhc----CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--cHHH
Confidence 88865433222 22223333332211 14579999998876554221 2233456899999999643 2222
Q ss_pred HHH-hcCCCCcEEEEecCCCCCC
Q 004347 335 KEL-KYIPIGNKLLLTGTPLQNN 356 (759)
Q Consensus 335 ~~l-~~l~~~~rllLTgTPl~n~ 356 (759)
+.+ ..++...-++.||||+...
T Consensus 395 ~~~~~~~~~a~~~gFTGTPi~~~ 417 (962)
T COG0610 395 KLLKKALKKAIFIGFTGTPIFKE 417 (962)
T ss_pred HHHHHHhccceEEEeeCCccccc
Confidence 332 3445577899999998654
No 156
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.5e-07 Score=105.53 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=86.5
Q ss_pred HHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC--CCCC--eEEEECCccH--H---HHHHHHHHhCCCceEE-EEeC
Q 004347 202 ISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG--LHGP--YLVIAPLSTL--S---NWVNEISRFVPSVSAI-IYHG 271 (759)
Q Consensus 202 ~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~--~~~~--~LIV~P~sll--~---~W~~E~~~~~p~~~~~-~~~g 271 (759)
+.....+.-.|+|-+||+|||.|.=-|+...-... ...| +=|--|..+- . .-..|+..+...+... -|.|
T Consensus 265 MEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ 344 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDG 344 (1172)
T ss_pred HHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEecc
Confidence 34445566789999999999999777665432211 1113 2333343322 2 2334454432223222 2333
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccc-cChh-------------hHHHHHH
Q 004347 272 SKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRL-KNPK-------------CKLLKEL 337 (759)
Q Consensus 272 ~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~i-kn~~-------------s~~~~~l 337 (759)
+ ......|-++|-+.+++++..-|....+..||+||||.= -|.. .+.++.-
T Consensus 345 t---------------i~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 345 T---------------IGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred c---------------cCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 335678999999999999876666667899999999952 2211 1122222
Q ss_pred hcCCCCcEEEEecCCCCCCHHHHHhhhhhccC
Q 004347 338 KYIPIGNKLLLTGTPLQNNLAELWSLLHFILP 369 (759)
Q Consensus 338 ~~l~~~~rllLTgTPl~n~~~el~sll~fl~p 369 (759)
..++.-..|+||||---.++.|=-.|+-.+-|
T Consensus 410 ~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP 441 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLRVSDFTENKRLFPIPPP 441 (1172)
T ss_pred cccCceeEEEEeeeEEecccccCceecCCCCc
Confidence 22334456999999744444443334443333
No 157
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.74 E-value=8.9e-07 Score=99.23 Aligned_cols=189 Identities=15% Similarity=0.216 Sum_probs=108.4
Q ss_pred cccccCCccchhHHHHHHHHHHHhhc------CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHH
Q 004347 182 VSLLTGGKLKSYQLKGVKWLISLWQN------GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVN 255 (759)
Q Consensus 182 ~~~~~~~~LrpyQ~~gv~~l~~~~~~------~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~ 255 (759)
.|....+.|-..|+++|-+.....+. +-|-+|.|.-|.||-.+...+|..-.-+|..+...|-+...+-..-.+
T Consensus 257 lP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 257 LPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAER 336 (1300)
T ss_pred cccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhh
Confidence 35566788999999999999875532 233488998888886665545544333444555666666666666677
Q ss_pred HHHHhC-CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-------H-hhhhcCc------cEEEE
Q 004347 256 EISRFV-PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-------K-YLRHYNW------KYLVV 320 (759)
Q Consensus 256 E~~~~~-p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~-------~-~l~~~~~------~~lIv 320 (759)
.+.... +.+.+..+. +..-..+... ....-+-.|+++||..+..+.. . +-+..+| .+||+
T Consensus 337 DL~DigA~~I~V~aln--K~KYakIss~---en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 337 DLRDIGATGIAVHALN--KFKYAKISSK---ENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred chhhcCCCCccceehh--hccccccccc---ccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 777663 232222211 1100000000 0011245799999998765431 1 1111223 48999
Q ss_pred cCcccccC-------hhhHHHH----HHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHH
Q 004347 321 DEGHRLKN-------PKCKLLK----ELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQ 379 (759)
Q Consensus 321 DEaH~ikn-------~~s~~~~----~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~ 379 (759)
||+|+.|| ..++..+ .-+.|+..+.+..|||-- .|=-+|..+.+-++|+....|.
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGA----sEPrNMaYM~RLGlWGegtaf~ 477 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGA----SEPRNMAYMVRLGLWGEGTAFP 477 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCC----CCcchhhhhhhhccccCCCcCc
Confidence 99999998 2233333 334567788899999953 3334445555555655444333
No 158
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.74 E-value=1.6e-06 Score=99.73 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHH-HHHHhCCCCCCeEEEECCcc-HHHHHHHHHHhC
Q 004347 194 QLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGNGLHGPYLVIAPLST-LSNWVNEISRFV 261 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li-~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~ 261 (759)
|.+.+.++...+.++...++-..||+|||+..+.-+ .++. .....++||++|+.. ..|+.+++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~-~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK-ERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH-hccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 788888888888888888899999999999865444 3333 223479999999774 477777766543
No 159
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.67 E-value=5.8e-06 Score=98.30 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=62.1
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCce-EEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCC--CCCE
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLT--AADT 604 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~--~a~~ 604 (759)
..+.++|||+.+-.++..+..+|...... .....|..+ +..+++.|...... .|++.+....+|||++ .+..
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCeeE
Confidence 34568999999999999999999876553 344555544 44899999974443 5899999999999998 5688
Q ss_pred EEEeCCCC
Q 004347 605 CILYDSDW 612 (759)
Q Consensus 605 VI~~D~~w 612 (759)
||+.-.|+
T Consensus 552 vvI~~lPf 559 (654)
T COG1199 552 VVIVGLPF 559 (654)
T ss_pred EEEEecCC
Confidence 99988776
No 160
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.67 E-value=1.1e-05 Score=98.85 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=64.1
Q ss_pred HHHHHHHHHh-hCCCcEEEEccchhHHHHHHHHHHhcCc--eEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccccc
Q 004347 518 LLDRLLARLF-ARNHKVLVFSQWTKILDIMEYYFNEKGY--EVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGG 594 (759)
Q Consensus 518 ~L~~lL~~l~-~~~~kvLIFsq~~~~ld~L~~~L~~~g~--~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg 594 (759)
.+.+.|..+. ..+.++|||..+..++..+...|..... .+..+.-+++...|.+++++|+..+.. +|+.|....
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sFw 815 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCccc
Confidence 4444444443 3566888888888888888888865421 133333233324688999999974433 678889999
Q ss_pred CCCCCCC--CCEEEEeCCCC-Ccc
Q 004347 595 LGINLTA--ADTCILYDSDW-NPQ 615 (759)
Q Consensus 595 ~GINL~~--a~~VI~~D~~w-np~ 615 (759)
+|||+++ +..||+.-.|+ +|.
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCC
Confidence 9999984 58889988777 443
No 161
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.64 E-value=2.5e-07 Score=85.06 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=71.2
Q ss_pred cCCCeEEEcCCCCcHHHHHHH-HHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCC
Q 004347 207 NGLNGILADQMGLGKTIQTIA-FLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMP 285 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~-li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~ 285 (759)
+|.--+|-.-+|.|||-..+. ++.....+ .+++||++|+.++.. |+.+...+.. +-++.+...+.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~---em~~aL~~~~-~~~~t~~~~~~-------- 68 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAE---EMYEALKGLP-VRFHTNARMRT-------- 68 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHH---HHHHHTTTSS-EEEESTTSS----------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHH---HHHHHHhcCC-cccCceeeecc--------
Confidence 344457777899999988664 33333333 369999999987643 3333333333 33333322111
Q ss_pred CCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHH-HhcC---CCCcEEEEecCC
Q 004347 286 RAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKE-LKYI---PIGNKLLLTGTP 352 (759)
Q Consensus 286 ~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~-l~~l---~~~~rllLTgTP 352 (759)
..+...|-+++|.++...+..-....+|+++|+||+|-. ++.+-..+. +..+ .....|++||||
T Consensus 69 --~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 69 --HFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred --ccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 124667889999987665433344568999999999985 333332222 2222 234679999999
No 162
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.62 E-value=1.8e-06 Score=99.61 Aligned_cols=154 Identities=20% Similarity=0.169 Sum_probs=90.3
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCCCCCeEEEECCccHH-HHHHHHHHhCC--Cc
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGLHGPYLVIAPLSTLS-NWVNEISRFVP--SV 264 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~~~~~~~LIV~P~sll~-~W~~E~~~~~p--~~ 264 (759)
.++.+|.+.+.- .....+.|.|.+.+++.|||+.+ |..+.....+ .+.+|.+.|-..+. .=..++..+.- ++
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--rr~~llilp~vsiv~Ek~~~l~~~~~~~G~ 298 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--RRNVLLILPYVSIVQEKISALSPFSIDLGF 298 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--hhceeEecceeehhHHHHhhhhhhccccCC
Confidence 455666655432 22246889999999999999986 3444444443 24678888844333 33344444432 34
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcC---ccEEEEcCcccccCh--hhH----HHH
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYN---WKYLVVDEGHRLKNP--KCK----LLK 335 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~---~~~lIvDEaH~ikn~--~s~----~~~ 335 (759)
.+-.|.|... +......-.+.|+|.+.........+..-+ ..+|||||-|.+... ... +.+
T Consensus 299 ~ve~y~g~~~----------p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k 368 (1008)
T KOG0950|consen 299 PVEEYAGRFP----------PEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAK 368 (1008)
T ss_pred cchhhcccCC----------CCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHH
Confidence 5555655321 111223567999999998777655554333 468999999998532 222 222
Q ss_pred HHhcCCCC--cEEEEecCCCCCC
Q 004347 336 ELKYIPIG--NKLLLTGTPLQNN 356 (759)
Q Consensus 336 ~l~~l~~~--~rllLTgTPl~n~ 356 (759)
.+..-... ..+++|||-.+|.
T Consensus 369 ~~y~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 369 ILYENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred HHHhccccceeEeeeecccCChH
Confidence 22222222 3699999965443
No 163
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.53 E-value=8.2e-07 Score=105.09 Aligned_cols=186 Identities=12% Similarity=0.152 Sum_probs=115.4
Q ss_pred chhHHHHHHHHHHHhhc----------------------------------CCCeEEEcCCCCcHHHHHHHHHHHHHhCC
Q 004347 191 KSYQLKGVKWLISLWQN----------------------------------GLNGILADQMGLGKTIQTIAFLAHLKGNG 236 (759)
Q Consensus 191 rpyQ~~gv~~l~~~~~~----------------------------------~~~~ILademGlGKTl~ai~li~~l~~~~ 236 (759)
-|||.++|..++..+.. ..+..+.++||+|||.+++..|.+|....
T Consensus 8 l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~ 87 (986)
T PRK15483 8 LPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYELHQKY 87 (986)
T ss_pred ChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHHHHHc
Confidence 58888888888876521 13568999999999999999999998876
Q ss_pred CCCCeEEEECCccHHH-HH---------HHHHHhCCC--ceEEEEeCChhH-------HHHHHHhcCCC-CCCCCCCEEE
Q 004347 237 LHGPYLVIAPLSTLSN-WV---------NEISRFVPS--VSAIIYHGSKKE-------RDEIRRKHMPR-AIGPKFPIVV 296 (759)
Q Consensus 237 ~~~~~LIV~P~sll~~-W~---------~E~~~~~p~--~~~~~~~g~~~~-------r~~~~~~~~~~-~~~~~~~vvI 296 (759)
....+||+||...+.. .. .-|...+++ +...+|.+.+.. -..++...-.. .......|+|
T Consensus 88 ~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv 167 (986)
T PRK15483 88 GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLL 167 (986)
T ss_pred CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEE
Confidence 7789999999765422 22 123332332 455566544311 11111111100 1122578999
Q ss_pred ecHHHHHHHHH------Hhh-h--hcCcc-------EEEEcCcccccChhhHHHHHHhcCCCCcEEEEecCCCC------
Q 004347 297 TSYEVALSDAR------KYL-R--HYNWK-------YLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQ------ 354 (759)
Q Consensus 297 ttye~l~~~~~------~~l-~--~~~~~-------~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTPl~------ 354 (759)
+|.+.+.++.. .+| . ..+|+ +||+||+|++.. ..+.+.++..+...+.+.-|||--.
T Consensus 168 ~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~~~~~~~g 246 (986)
T PRK15483 168 INAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFPDITEGKG 246 (986)
T ss_pred EehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecCCcccccc
Confidence 99998765321 111 1 12333 799999999965 2446788899999999999999533
Q ss_pred -C--CHHHHHhhhhhccCCCCCChHHHHHHh
Q 004347 355 -N--NLAELWSLLHFILPDIFSSLEEFQSWF 382 (759)
Q Consensus 355 -n--~~~el~sll~fl~p~~~~~~~~F~~~f 382 (759)
| ...++++|+.-|+| .+.|....
T Consensus 247 ~~~~~~~d~~NlvY~Lda-----vdAyn~~L 272 (986)
T PRK15483 247 KNKCTRKDYYNLQFDLNA-----VDSFNDGL 272 (986)
T ss_pred ccccccccccCceeecCH-----HHHHHhCC
Confidence 1 11235666655544 45555443
No 164
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.52 E-value=2.8e-06 Score=97.98 Aligned_cols=111 Identities=20% Similarity=0.402 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccccc
Q 004347 515 KFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGG 594 (759)
Q Consensus 515 K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg 594 (759)
...+...++..+ ..|+++.|||......++++.++...+..+..++|..+..+ ++.+. +++| ++=|.+..
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W~----~~~V-viYT~~it 337 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESWK----KYDV-VIYTPVIT 337 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccccc----ceeE-EEEeceEE
Confidence 445566666665 57999999999999999999999999999999988777552 23333 3455 77777888
Q ss_pred CCCCCC--CCCEEEEe--CCCCCcch--hhHHhhhhhhcCCCCceEEE
Q 004347 595 LGINLT--AADTCILY--DSDWNPQM--DLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 595 ~GINL~--~a~~VI~~--D~~wnp~~--~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
.|+++- ..+.|..| .....|.. ..|.+||+-.++. +.+.||
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~ 384 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVY 384 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEE
Confidence 899885 45666656 33334443 5899999998873 334444
No 165
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.48 E-value=5.5e-05 Score=89.79 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=88.8
Q ss_pred cchhHHHHHHHHHHHhhc----CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHh----
Q 004347 190 LKSYQLKGVKWLISLWQN----GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRF---- 260 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~----~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~---- 260 (759)
=+-.|-+++..+..+.++ |.-|+--..||+|||+.=.-++..|...+..-++.|.--..+| -|=-+++++-
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 356899999888875433 3335667779999999987777777654433233332222222 1112222221
Q ss_pred --------------------------------------CCCce---EEEEeCChhHHHHHHHhcCC-C-CCCCCCCEEEe
Q 004347 261 --------------------------------------VPSVS---AIIYHGSKKERDEIRRKHMP-R-AIGPKFPIVVT 297 (759)
Q Consensus 261 --------------------------------------~p~~~---~~~~~g~~~~r~~~~~~~~~-~-~~~~~~~vvIt 297 (759)
++... .+-|.|+-.+-.......-. + ...-..+|+|+
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 11111 33444432211100000000 0 00013479999
Q ss_pred cHHHHHHHHH------Hhh--hhcCccEEEEcCcccccChhhH-HHHHHh--cCCCCcEEEEecCCCCCCHHHH
Q 004347 298 SYEVALSDAR------KYL--RHYNWKYLVVDEGHRLKNPKCK-LLKELK--YIPIGNKLLLTGTPLQNNLAEL 360 (759)
Q Consensus 298 tye~l~~~~~------~~l--~~~~~~~lIvDEaH~ikn~~s~-~~~~l~--~l~~~~rllLTgTPl~n~~~el 360 (759)
|.+.++.-.. ..+ ...--..|||||+|-+-..... +.+.+. ..-..+.++||||--+.-...|
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 9888775531 111 1222368999999988643333 333333 3356788999999654433333
No 166
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.48 E-value=6.8e-06 Score=91.11 Aligned_cols=108 Identities=21% Similarity=0.268 Sum_probs=71.2
Q ss_pred CcEEEEccchhHHHH----HHHHHHhc-----CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCC
Q 004347 531 HKVLVFSQWTKILDI----MEYYFNEK-----GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTA 601 (759)
Q Consensus 531 ~kvLIFsq~~~~ld~----L~~~L~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~ 601 (759)
.-+|||-.-...+.. |.+.+... .+-++-|+.+.+.+...++ |.....+++-++++|..+...|.+.+
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecC
Confidence 447888655544333 33333333 3457889999998776666 44434556667999999999999999
Q ss_pred CCEEEEeCCC------CCcch--------------hhHHhhhhhhcCCCCceEEEEEeeCCCHHH
Q 004347 602 ADTCILYDSD------WNPQM--------------DLQAMDRCHRIGQTKPVHVYRLATAQSVEG 646 (759)
Q Consensus 602 a~~VI~~D~~------wnp~~--------------~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe 646 (759)
+..|| ||. +||.. -.||.||++| +.|-..|||+++.+...
T Consensus 551 I~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGR---tgPGKCfRLYt~~aY~~ 610 (902)
T KOG0923|consen 551 IKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGR---TGPGKCFRLYTAWAYEH 610 (902)
T ss_pred eEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCC---CCCCceEEeechhhhhh
Confidence 88887 433 34432 2466666655 55778899999766544
No 167
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.46 E-value=1.1e-05 Score=94.90 Aligned_cols=127 Identities=18% Similarity=0.237 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHHh----c---CceEEEEeCCCCHHHHHHHHHHhhccCCCceEE
Q 004347 516 FRLLDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNE----K---GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIF 586 (759)
Q Consensus 516 ~~~L~~lL~~l~~--~~~kvLIFsq~~~~ld~L~~~L~~----~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~ 586 (759)
+.++..++..+.. ....+|||-.-...+..+...|.. . .+-+..+|++++..+.+.+ |+.+..+++-+
T Consensus 397 ~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RKI 473 (924)
T KOG0920|consen 397 YDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRKI 473 (924)
T ss_pred HHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcchh
Confidence 3444444444433 346899999888777666666643 2 2567788999998877776 55555666668
Q ss_pred EEecccccCCCCCCCCCEEEE--------eCCCCCc----------chhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHH
Q 004347 587 LLSTRAGGLGINLTAADTCIL--------YDSDWNP----------QMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRI 648 (759)
Q Consensus 587 LlsT~agg~GINL~~a~~VI~--------~D~~wnp----------~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i 648 (759)
+++|..+...|.+.++-.||- ||+.-|- +.-.||.||++| ..+-.+|+|++..-.+..+
T Consensus 474 IlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~~~ 550 (924)
T KOG0920|consen 474 ILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEKLM 550 (924)
T ss_pred hhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhhcc
Confidence 999999999999998877763 5544322 223588777777 5677899999987555443
No 168
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.42 E-value=9.2e-06 Score=96.27 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc-CceEEEEeCCCCHHHHHHHHHHhhc----cCCCceEEEEecc
Q 004347 517 RLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK-GYEVCRIDGSVRLDERKRQIQDFND----VNSSYRIFLLSTR 591 (759)
Q Consensus 517 ~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~l~G~~~~~~R~~~i~~F~~----~~~~~~v~LlsT~ 591 (759)
..+.+.+..+...+..+|||..+..+++.+...|... +++ +...|.. .|.++++.|.+ +++. +|++|.
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~---VL~g~~ 593 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGS---VLFGLQ 593 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCe---EEEEec
Confidence 3445555444445556888888888888888888643 333 3445642 57788877764 2233 678889
Q ss_pred cccCCCCCC--CCCEEEEeCCCC
Q 004347 592 AGGLGINLT--AADTCILYDSDW 612 (759)
Q Consensus 592 agg~GINL~--~a~~VI~~D~~w 612 (759)
...+|||++ .+..||+.-.|+
T Consensus 594 sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 594 SFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccccccCCCCceEEEEEEcCCC
Confidence 999999997 478899977775
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.32 E-value=1.1e-05 Score=85.28 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=53.2
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHH-HHHHhCCC---CCCeEEEECCccH-HHHHHHHHHh
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGNGL---HGPYLVIAPLSTL-SNWVNEISRF 260 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li-~~l~~~~~---~~~~LIV~P~sll-~~W~~E~~~~ 260 (759)
..||.|.+-+..+...+.++.++|+-.+||+|||+..+..+ .++...+. ..++++++++... .+-..++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45999999999999999999999999999999999977555 44444333 2378888886543 4444555543
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.32 E-value=1.1e-05 Score=85.28 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=53.2
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHH-HHHHhCCC---CCCeEEEECCccH-HHHHHHHHHh
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGNGL---HGPYLVIAPLSTL-SNWVNEISRF 260 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li-~~l~~~~~---~~~~LIV~P~sll-~~W~~E~~~~ 260 (759)
..||.|.+-+..+...+.++.++|+-.+||+|||+..+..+ .++...+. ..++++++++... .+-..++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45999999999999999999999999999999999977555 44444333 2378888886543 4444555543
No 171
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.30 E-value=1.3e-06 Score=90.10 Aligned_cols=94 Identities=22% Similarity=0.281 Sum_probs=75.4
Q ss_pred HHHHHhhccCCCceEEEEecccccCCCCCCCC-------C-EEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 571 RQIQDFNDVNSSYRIFLLSTRAGGLGINLTAA-------D-TCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 571 ~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a-------~-~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
...+.|+++ ...|+|+ ++|||.||+||+- . .-|.+++||+....+|..||+||-||..+..+..+++.-
T Consensus 52 ~e~~~F~~g--~k~v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDG--EKDVAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCC--CceEEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 566799974 4555555 5999999999953 2 336799999999999999999999999986655566666
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCc
Q 004347 643 SVEGRILKRAFSKLKLEHVVIGKGQ 667 (759)
Q Consensus 643 TvEe~i~~~~~~K~~l~~~vi~~~~ 667 (759)
..|.+......+|+.-..+...+..
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccCcc
Confidence 7999999999999998777776543
No 172
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.30 E-value=1e-05 Score=87.88 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=100.1
Q ss_pred hhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHH----hcCc----eEEEEeCCCCHHHHHHHHHHhhccCCC
Q 004347 511 EQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFN----EKGY----EVCRIDGSVRLDERKRQIQDFNDVNSS 582 (759)
Q Consensus 511 ~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~----~~g~----~~~~l~G~~~~~~R~~~i~~F~~~~~~ 582 (759)
+.+.|..-...++.++...|-|.|-||..+...+.+....+ .-|- .+..+.|+.+.++|+++-.+.-. ++
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~--G~ 583 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG--GK 583 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC--Ce
Confidence 34567777888888888899999999999987666544322 2111 24567899999999998877654 33
Q ss_pred ceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHH
Q 004347 583 YRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRI 648 (759)
Q Consensus 583 ~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i 648 (759)
.. -+|+|.|+.+|||+-..|.|++...|.+.+.+.|..||++|-+... ..|| .+..+.||+.-
T Consensus 584 L~-giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~S-Lavy-va~~~PVDQ~Y 646 (1034)
T KOG4150|consen 584 LC-GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPS-LAVY-VAFLGPVDQYY 646 (1034)
T ss_pred ee-EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCc-eEEE-EEeccchhhHh
Confidence 33 4899999999999999999999999999999999999999976432 2332 23344566544
No 173
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.25 E-value=7.9e-05 Score=87.09 Aligned_cols=126 Identities=11% Similarity=0.033 Sum_probs=87.9
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEE
Q 004347 217 MGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIV 295 (759)
Q Consensus 217 mGlGKTl~ai~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vv 295 (759)
.|+|||-.-+.++......| +.+||++|. ++..|+...|...++...+.++|+......+.+... ....+...||
T Consensus 169 ~GSGKTevyl~~i~~~l~~G--k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~--~~~~G~~~IV 244 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG--RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWL--AVLRGQARVV 244 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC--CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHH--HHhCCCCcEE
Confidence 49999999999998888765 469999994 477999999999997677888988665554433221 2234567899
Q ss_pred EecHHHHHHHHHHhhhhcCccEEEEcCcccc--cChh-----hH-HHHHHhcCCCCcEEEEecCC
Q 004347 296 VTSYEVALSDARKYLRHYNWKYLVVDEGHRL--KNPK-----CK-LLKELKYIPIGNKLLLTGTP 352 (759)
Q Consensus 296 Ittye~l~~~~~~~l~~~~~~~lIvDEaH~i--kn~~-----s~-~~~~l~~l~~~~rllLTgTP 352 (759)
|.|...+ |+--.+..+|||||=|.- |... .. +.........-..|+-|+||
T Consensus 245 iGtRSAv------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 245 VGTRSAV------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred EEcceeE------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 9998853 333346789999999964 3221 11 22222233455678889999
No 174
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00038 Score=81.28 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=88.9
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
...|+.++.+-+......|..|||-+.+....+.+...|...|++...++.... .|...+-.+. +....+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A---G~~gaVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA---GQPGAVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc---CCCCccccccc
Confidence 345999999999999999999999999999999999999999999999988777 4444444433 22223688999
Q ss_pred cccCCCCCC-CCC----------EEEEeCCCCCcchhhHHhhhhhhcCC
Q 004347 592 AGGLGINLT-AAD----------TCILYDSDWNPQMDLQAMDRCHRIGQ 629 (759)
Q Consensus 592 agg~GINL~-~a~----------~VI~~D~~wnp~~~~Qa~gR~~RiGQ 629 (759)
.+|+|-|+. +.+ +||=-...-+--.+.|--||++|.|-
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 999999986 333 34555555566667799999999993
No 175
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.98 E-value=0.00012 Score=78.88 Aligned_cols=63 Identities=27% Similarity=0.432 Sum_probs=49.0
Q ss_pred eEEEEecccccCCCCCCCCCEEEEeCCC------CCc-----------chhhHHhhhhhhcCCCCceEEEEEeeCCCHHH
Q 004347 584 RIFLLSTRAGGLGINLTAADTCILYDSD------WNP-----------QMDLQAMDRCHRIGQTKPVHVYRLATAQSVEG 646 (759)
Q Consensus 584 ~v~LlsT~agg~GINL~~a~~VI~~D~~------wnp-----------~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe 646 (759)
+-+++||..+...+.+.+.-.|| |+. +|| ..-.||.-|++|.|.++|-..|+|+|+..++.
T Consensus 314 RkvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred ceEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 34699999999999888776666 443 344 44469999999999999999999999876554
Q ss_pred HH
Q 004347 647 RI 648 (759)
Q Consensus 647 ~i 648 (759)
.+
T Consensus 392 em 393 (699)
T KOG0925|consen 392 EM 393 (699)
T ss_pred cC
Confidence 43
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.95 E-value=4.8e-05 Score=77.67 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=48.4
Q ss_pred ccchhHHHHHHHHHHHhhcCCC-eEEEcCCCCcHHHHHHHHHHHHH------hCCCCCCeEEEECCc-cHHHHHHHHHH
Q 004347 189 KLKSYQLKGVKWLISLWQNGLN-GILADQMGLGKTIQTIAFLAHLK------GNGLHGPYLVIAPLS-TLSNWVNEISR 259 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~-~ILademGlGKTl~ai~li~~l~------~~~~~~~~LIV~P~s-ll~~W~~E~~~ 259 (759)
+|-+.|..++..++. ... .++.-+.|+|||.+..+++..+. .....+++||++|+. .+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 467899999987764 344 78899999999988888888873 355678999999965 56777777766
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.68 E-value=0.00023 Score=70.75 Aligned_cols=152 Identities=19% Similarity=0.215 Sum_probs=72.5
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEE
Q 004347 190 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIY 269 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~ 269 (759)
+.+.|...+..+.. ....++.-..|+|||+.|++...++...+...+++|+-|..-...+ + -|.|+-----+
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~---l-GflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGED---L-GFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------SS--------
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccc---c-ccCCCCHHHHH
Confidence 45789998888873 5567888889999999999999888888888899999886643222 1 12222100000
Q ss_pred eCC-hhHHHHHHHhcCCCC----CCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCc
Q 004347 270 HGS-KKERDEIRRKHMPRA----IGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGN 344 (759)
Q Consensus 270 ~g~-~~~r~~~~~~~~~~~----~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~ 344 (759)
..- ..-.+.+.. .+... ......|-+.+...++.. .+...+||||||+++.. ..+...+.++....
T Consensus 77 ~p~~~p~~d~l~~-~~~~~~~~~~~~~~~Ie~~~~~~iRGr------t~~~~~iIvDEaQN~t~--~~~k~ilTR~g~~s 147 (205)
T PF02562_consen 77 EPYLRPIYDALEE-LFGKEKLEELIQNGKIEIEPLAFIRGR------TFDNAFIIVDEAQNLTP--EELKMILTRIGEGS 147 (205)
T ss_dssp -TTTHHHHHHHTT-TS-TTCHHHHHHTTSEEEEEGGGGTT--------B-SEEEEE-SGGG--H--HHHHHHHTTB-TT-
T ss_pred HHHHHHHHHHHHH-HhChHhHHHHhhcCeEEEEehhhhcCc------cccceEEEEecccCCCH--HHHHHHHcccCCCc
Confidence 000 000000000 00000 001223444444433211 23458999999999853 34555577888889
Q ss_pred EEEEecCCCCCCHH
Q 004347 345 KLLLTGTPLQNNLA 358 (759)
Q Consensus 345 rllLTgTPl~n~~~ 358 (759)
++.++|-|.|.+..
T Consensus 148 kii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 148 KIIITGDPSQIDLP 161 (205)
T ss_dssp EEEEEE--------
T ss_pred EEEEecCceeecCC
Confidence 99999999776533
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.64 E-value=0.00021 Score=73.00 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=86.0
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCce---
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVS--- 265 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~--- 265 (759)
.....|...+.++.. ...+++.-+.|+|||+.++++.......+...+++|.=|.... .+...|.|+.-
T Consensus 59 p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLPG~~~eK 130 (262)
T PRK10536 59 ARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLPGDIAEK 130 (262)
T ss_pred CCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCCCCHHHH
Confidence 345678877777753 5578888999999999999988865544445555555554322 23344444310
Q ss_pred EE-----------EEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHH
Q 004347 266 AI-----------IYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLL 334 (759)
Q Consensus 266 ~~-----------~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~ 334 (759)
.. .+.|...-...+. .....|-|.+...++.. .+.-++||||||+++.- ....
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~--------~~~~~Iei~~l~ymRGr------tl~~~~vIvDEaqn~~~--~~~k 194 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLR--------PEIGKVEIAPFAYMRGR------TFENAVVILDEAQNVTA--AQMK 194 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHH--------hccCcEEEecHHHhcCC------cccCCEEEEechhcCCH--HHHH
Confidence 00 0011110000000 01234556655544322 12337999999999864 5566
Q ss_pred HHHhcCCCCcEEEEecCCCCCC
Q 004347 335 KELKYIPIGNKLLLTGTPLQNN 356 (759)
Q Consensus 335 ~~l~~l~~~~rllLTgTPl~n~ 356 (759)
..+.++....+++++|-|-|.+
T Consensus 195 ~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 195 MFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred HHHhhcCCCCEEEEeCChhhcc
Confidence 6778888999999999997765
No 179
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.63 E-value=0.00066 Score=70.31 Aligned_cols=123 Identities=22% Similarity=0.138 Sum_probs=75.4
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH----HHHHHHHHHh
Q 004347 185 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL----SNWVNEISRF 260 (759)
Q Consensus 185 ~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll----~~W~~E~~~~ 260 (759)
..+..+++-|+-|+-.|. .|-|.=..||=|||+++...+....-.| .++=|||.+..| .+|...|-++
T Consensus 73 ~~g~~p~~vQll~~l~L~------~G~laEm~TGEGKTli~~l~a~~~AL~G--~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALH------KGRLAEMKTGEGKTLIAALPAALNALQG--KGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp HTS----HHHHHHHHHHH------TTSEEEESTTSHHHHHHHHHHHHHHTTS--S-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCCcccHHHHhhhhhcc------cceeEEecCCCCcHHHHHHHHHHHHHhc--CCcEEEeccHHHhhccHHHHHHHHHH
Confidence 346678888988775552 3558889999999999764443333333 578888888877 4599999888
Q ss_pred CCCceEEEEeC-Chh-HHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH-HHhh-------hhcCccEEEEcCcccc
Q 004347 261 VPSVSAIIYHG-SKK-ERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA-RKYL-------RHYNWKYLVVDEGHRL 326 (759)
Q Consensus 261 ~p~~~~~~~~g-~~~-~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~-~~~l-------~~~~~~~lIvDEaH~i 326 (759)
+. +.+-+..+ ... .|... -..+|+.+|-..+.-|+ +..+ ...+++++||||++.+
T Consensus 145 LG-lsv~~~~~~~~~~~r~~~----------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 145 LG-LSVGIITSDMSSEERREA----------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp TT---EEEEETTTEHHHHHHH----------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred hh-hccccCccccCHHHHHHH----------HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 84 45444444 332 22221 13478888877766543 2221 1346889999999965
No 180
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.46 E-value=0.00018 Score=66.45 Aligned_cols=116 Identities=21% Similarity=0.169 Sum_probs=64.9
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhC----CCCCCeEEEECCcc-HHHHHHHHHHhCCCceEEEEeCChhHHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGN----GLHGPYLVIAPLST-LSNWVNEISRFVPSVSAIIYHGSKKERDEIRR 281 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~----~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~ 281 (759)
++..+++.-+.|+|||..+-.++..+... +...-+.|-||... ...+..++...+....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---------------- 66 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL---------------- 66 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS----------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc----------------
Confidence 35567888999999999988888776541 11122344555443 4455555544321000
Q ss_pred hcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC--CCCcEEEEecCC
Q 004347 282 KHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI--PIGNKLLLTGTP 352 (759)
Q Consensus 282 ~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l--~~~~rllLTgTP 352 (759)
.. -.+...+...+...+....-.+|||||+|++. .......++.+ .....++|+|||
T Consensus 67 --------~~----~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 67 --------KS----RQTSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp --------SS----TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred --------cc----cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 00 11233334444455666655799999999983 24444444444 566679999999
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.30 E-value=0.0031 Score=62.89 Aligned_cols=131 Identities=21% Similarity=0.246 Sum_probs=69.0
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEE
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAII 268 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~ 268 (759)
+|.+-|.+++..++. ....-.+|.-..|+|||...-.+...+...+ .++++++|++....= +.+-. ......
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT~~Aa~~---L~~~~-~~~a~T 72 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPTNKAAKE---LREKT-GIEAQT 72 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESSHHHHHH---HHHHH-TS-EEE
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCcHHHHHH---HHHhh-Ccchhh
Confidence 477899999999874 2223357778899999988776666666654 789999998754322 22221 011111
Q ss_pred EeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCC-CCcEEE
Q 004347 269 YHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIP-IGNKLL 347 (759)
Q Consensus 269 ~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~-~~~rll 347 (759)
++. +.............. ....++||||||-.+-+. .+...+...+ ...+++
T Consensus 73 i~~-------~l~~~~~~~~~~~~~------------------~~~~~vliVDEasmv~~~--~~~~ll~~~~~~~~kli 125 (196)
T PF13604_consen 73 IHS-------FLYRIPNGDDEGRPE------------------LPKKDVLIVDEASMVDSR--QLARLLRLAKKSGAKLI 125 (196)
T ss_dssp HHH-------HTTEECCEECCSSCC-------------------TSTSEEEESSGGG-BHH--HHHHHHHHS-T-T-EEE
T ss_pred HHH-------HHhcCCccccccccc------------------CCcccEEEEecccccCHH--HHHHHHHHHHhcCCEEE
Confidence 000 000000000000000 234579999999998543 3444444443 367899
Q ss_pred EecCCCC
Q 004347 348 LTGTPLQ 354 (759)
Q Consensus 348 LTgTPl~ 354 (759)
|.|-|.|
T Consensus 126 lvGD~~Q 132 (196)
T PF13604_consen 126 LVGDPNQ 132 (196)
T ss_dssp EEE-TTS
T ss_pred EECCcch
Confidence 9999865
No 182
>PF13892 DBINO: DNA-binding domain
Probab=97.27 E-value=0.00034 Score=63.75 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=26.1
Q ss_pred ccccchHHHhhhHHHHhhHHHHHHHHHhhhhh
Q 004347 81 EDHLNDLQFNKLDELLTQTQMYAEFLLEKMED 112 (759)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (759)
|.....++.++|+|||+||++|+||+..++..
T Consensus 104 E~~e~~rq~~rl~fLl~QTElfsHF~~~k~~~ 135 (139)
T PF13892_consen 104 EKREAKRQQRRLNFLLTQTELFSHFMQNKAKT 135 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 44455667899999999999999999887643
No 183
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.23 E-value=0.0011 Score=76.82 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=41.1
Q ss_pred ccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH----HHHHHHHH
Q 004347 183 SLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT----IAFLAHLK 233 (759)
Q Consensus 183 ~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a----i~li~~l~ 233 (759)
|.-...++||-|+.-+..++....+..+|+|-.+||+|||+.. +|+..++.
T Consensus 15 ~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k 69 (945)
T KOG1132|consen 15 PVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLK 69 (945)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhh
Confidence 4444557899999999999999999999999999999999873 34444444
No 184
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.19 E-value=0.0018 Score=72.23 Aligned_cols=66 Identities=27% Similarity=0.304 Sum_probs=52.6
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEI 257 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~ 257 (759)
...|-+-|..++.+++. +..-.++--++|+|||.+..-+|..+...+ .++||++|+. .+.|-...+
T Consensus 183 ~~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~--k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK--KRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred CccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC--CeEEEEcCchHHHHHHHHHh
Confidence 34678899999999885 223457778899999999999999988865 7999999977 467876643
No 185
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.11 E-value=0.0031 Score=74.10 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=54.2
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-HHHHHHHHHHh
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRF 260 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~ 260 (759)
..|-+.|..+|..++. .....++--..|+|||.+++.++..+...|. ++||++|+.. +.+....+...
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~--~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRGL--RVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC--CEEEEcCcHHHHHHHHHHHHhC
Confidence 4688999999988763 2345688888999999999999988887654 8999999774 56777777653
No 186
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.08 E-value=0.0029 Score=72.99 Aligned_cols=134 Identities=17% Similarity=0.122 Sum_probs=85.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH--------HHHHH-HHhCCC--ceEEEEeCChhHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN--------WVNEI-SRFVPS--VSAIIYHGSKKER 276 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~--------W~~E~-~~~~p~--~~~~~~~g~~~~r 276 (759)
..|+=+-+|||+|||.+-+-.+..|.......+++||||+-.+.- -.+.| ..++.+ ...++|. ....+
T Consensus 74 ~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~-~~~~~ 152 (985)
T COG3587 74 KLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD-EDIEK 152 (985)
T ss_pred cceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec-hHHHH
Confidence 445567799999999999999988888777789999999665411 12223 333332 3344443 11111
Q ss_pred HHHHHhcCCCCCCCCCCEEEecHHHHHHH---H--------------------HHhhhhcCccEEEEcCcccccChhhHH
Q 004347 277 DEIRRKHMPRAIGPKFPIVVTSYEVALSD---A--------------------RKYLRHYNWKYLVVDEGHRLKNPKCKL 333 (759)
Q Consensus 277 ~~~~~~~~~~~~~~~~~vvIttye~l~~~---~--------------------~~~l~~~~~~~lIvDEaH~ikn~~s~~ 333 (759)
.. ......+.|++.+.+.+.++ . -..+...+ -+|||||.|++... .+.
T Consensus 153 ~~-------~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~r-PIvIvDEPh~f~~~-~k~ 223 (985)
T COG3587 153 FK-------FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMR-PIVIVDEPHRFLGD-DKT 223 (985)
T ss_pred Hh-------hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcC-CEEEecChhhcccc-hHH
Confidence 11 11223556667666554443 0 01122222 37999999999875 788
Q ss_pred HHHHhcCCCCcEEEEecC
Q 004347 334 LKELKYIPIGNKLLLTGT 351 (759)
Q Consensus 334 ~~~l~~l~~~~rllLTgT 351 (759)
+.++..+..-..+=.+||
T Consensus 224 ~~~i~~l~pl~ilRfgAT 241 (985)
T COG3587 224 YGAIKQLNPLLILRFGAT 241 (985)
T ss_pred HHHHHhhCceEEEEeccc
Confidence 999999998888888888
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.06 E-value=0.0023 Score=70.10 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=56.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHH-HHHhC-CCceEEEEeCChhHHHHHHHhcCCCCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE-ISRFV-PSVSAIIYHGSKKERDEIRRKHMPRAI 288 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E-~~~~~-p~~~~~~~~g~~~~r~~~~~~~~~~~~ 288 (759)
.|+--..|+|||+.++.++..+.........+++|+...+.+..++ +..-. +
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-------------------------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP-------------------------- 57 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc--------------------------
Confidence 3556679999999999999998434445678899998877665544 33221 0
Q ss_pred CCCCCEEEecHHHHHHHHH-HhhhhcCccEEEEcCcccccC
Q 004347 289 GPKFPIVVTSYEVALSDAR-KYLRHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 289 ~~~~~vvIttye~l~~~~~-~~l~~~~~~~lIvDEaH~ikn 328 (759)
......+..+..+..... .......+++|||||||++..
T Consensus 58 -~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 -KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred -chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 011122223333322221 112234689999999999976
No 188
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.93 E-value=0.00041 Score=85.45 Aligned_cols=182 Identities=25% Similarity=0.285 Sum_probs=104.3
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCc--HHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCc
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLG--KTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSV 264 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlG--KTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~ 264 (759)
...+.++|.....-... .......+++..|+| ||+.+..+.......+...+.++++|..+..+|..+...++...
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (866)
T COG0553 82 RFILIPHQLDIALEVLN--ELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKFNIR 159 (866)
T ss_pred ccccCcchhhhhhhhhh--hhhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhcccc
Confidence 34667788766544333 222337889999999 99998888888777778889999999888899999887763221
Q ss_pred eEEE-EeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH---HHhhhhcCc---cEEEEcCcccccChh-------
Q 004347 265 SAII-YHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA---RKYLRHYNW---KYLVVDEGHRLKNPK------- 330 (759)
Q Consensus 265 ~~~~-~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~---~~~l~~~~~---~~lIvDEaH~ikn~~------- 330 (759)
.... ..+.......... . . .....+.++.+.+...... ...+....| +++++||+|...+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (866)
T COG0553 160 LAVLDKEGLRYLLKQYDA--Y-N-PFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAP 235 (866)
T ss_pred chhhhhhhhhhhhhhhcc--c-c-cccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccc
Confidence 1111 1111100000000 0 0 0001111344444433321 123344456 899999999987632
Q ss_pred --hHHHHHHhcCC--------CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCC
Q 004347 331 --CKLLKELKYIP--------IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSS 374 (759)
Q Consensus 331 --s~~~~~l~~l~--------~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~ 374 (759)
......+.... ......+++||......+++....++.+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 236 LETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred hhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 22222222221 112358899999988888777666666655444
No 189
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.92 E-value=0.0028 Score=61.44 Aligned_cols=78 Identities=21% Similarity=0.242 Sum_probs=55.0
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcC----ceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc--cccCCCCCC-
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKG----YEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR--AGGLGINLT- 600 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g----~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~--agg~GINL~- 600 (759)
..+..+|||+.+-..++.+...+...+ +.+.. .+ ..++..++++|..+.+. +|+++. ...+|||++
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q~---~~~~~~~l~~~~~~~~~---il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-QG---SKSRDELLEEFKRGEGA---ILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-ST---CCHHHHHHHHHCCSSSE---EEEEETTSCCGSSS--EC
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-cC---cchHHHHHHHHHhccCe---EEEEEecccEEEeecCCC
Confidence 456899999999999999999987653 33322 22 34789999999984333 688887 899999998
Q ss_pred -CCCEEEEeCCCC
Q 004347 601 -AADTCILYDSDW 612 (759)
Q Consensus 601 -~a~~VI~~D~~w 612 (759)
.+..||+.-.|+
T Consensus 80 ~~~r~vii~glPf 92 (167)
T PF13307_consen 80 DLLRAVIIVGLPF 92 (167)
T ss_dssp ESEEEEEEES---
T ss_pred chhheeeecCCCC
Confidence 588999988886
No 190
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=96.90 E-value=0.067 Score=64.52 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=74.3
Q ss_pred hhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-----HHHHHHHHHhCCCceEEEEeCChhHHHHH
Q 004347 205 WQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-----SNWVNEISRFVPSVSAIIYHGSKKERDEI 279 (759)
Q Consensus 205 ~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-----~~W~~E~~~~~p~~~~~~~~g~~~~r~~~ 279 (759)
|..+.+.+++...|+|||+.|=.++. .....+++.-|+|...+ .-|..-|... .+..+...+|...-...
T Consensus 1156 y~~nd~v~vga~~gsgkt~~ae~a~l---~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lk- 1230 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACAELALL---RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLK- 1230 (1674)
T ss_pred ecccceEEEecCCCCchhHHHHHHhc---CCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchH-
Confidence 35567889999999999976532222 14566789999998765 4588888776 46666667765533222
Q ss_pred HHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccCh
Q 004347 280 RRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNP 329 (759)
Q Consensus 280 ~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~ 329 (759)
.....+|+|.|++.+-.- ...+ ..++.|+||.|.+...
T Consensus 1231 --------l~~~~~vii~tpe~~d~l--q~iQ--~v~l~i~d~lh~igg~ 1268 (1674)
T KOG0951|consen 1231 --------LLQKGQVIISTPEQWDLL--QSIQ--QVDLFIVDELHLIGGV 1268 (1674)
T ss_pred --------HhhhcceEEechhHHHHH--hhhh--hcceEeeehhhhhccc
Confidence 124668999999976332 2222 3589999999998753
No 191
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.89 E-value=0.0052 Score=68.98 Aligned_cols=138 Identities=18% Similarity=0.331 Sum_probs=90.9
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-HHHHHHHHHHhCCCceE
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRFVPSVSA 266 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~~ 266 (759)
.+|-.-|..+|...+. +.-.||--+.|+|||+++.+++.++.++ ..+|+||++|..+ +.|-..-|++-. +++
T Consensus 409 pkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~tg--LKV 481 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHKTG--LKV 481 (935)
T ss_pred hhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHHHHHHHHhcC--ceE
Confidence 3788899999999885 5557999999999999999999999887 5689999999664 678777777653 555
Q ss_pred EEEeCChhH----------------------HHHHHHhc-----C---------------CCCCCCCCCEEEecHHHHHH
Q 004347 267 IIYHGSKKE----------------------RDEIRRKH-----M---------------PRAIGPKFPIVVTSYEVALS 304 (759)
Q Consensus 267 ~~~~g~~~~----------------------r~~~~~~~-----~---------------~~~~~~~~~vvIttye~l~~ 304 (759)
+-+.....+ -+.+.+.. + ...+....+||.+|.-..-
T Consensus 482 vRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~Ag- 560 (935)
T KOG1802|consen 482 VRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGAG- 560 (935)
T ss_pred eeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEeccccc-
Confidence 543322211 01100000 0 0011224456665543322
Q ss_pred HHHHhhhhcCccEEEEcCcccccChhhHHHH
Q 004347 305 DARKYLRHYNWKYLVVDEGHRLKNPKCKLLK 335 (759)
Q Consensus 305 ~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~ 335 (759)
...|..+.|..|+||||-....+.|..--
T Consensus 561 --d~rl~~~kfr~VLiDEaTQatEpe~LiPl 589 (935)
T KOG1802|consen 561 --DRRLSKFKFRTVLIDEATQATEPECLIPL 589 (935)
T ss_pred --chhhccccccEEEEecccccCCcchhhhh
Confidence 13366688999999999988776665433
No 192
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.70 E-value=0.0033 Score=63.10 Aligned_cols=74 Identities=23% Similarity=0.254 Sum_probs=60.4
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhC
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFV 261 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 261 (759)
.+..+||-|.+.+..|+.. ..+.|.++-.-||-|||-..+.+++.+...|. .=+-+|+|+.++.+-..-+...+
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~-~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS-RLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHHHHHHHH
Confidence 4568999999999999863 45678899999999999999999988887653 45778999999988777766554
No 193
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.66 E-value=0.0074 Score=65.94 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=46.6
Q ss_pred cccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC-CCCeEEEEC
Q 004347 184 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL-HGPYLVIAP 246 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~-~~~~LIV~P 246 (759)
++.....+|-|..-..-+......+++|+|-++.|+|||+.-++++.......+ ...-||-|.
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 445567899998766666666778889999999999999998888765544333 334566665
No 194
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.63 E-value=0.014 Score=69.60 Aligned_cols=135 Identities=23% Similarity=0.214 Sum_probs=85.3
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceE
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSA 266 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~ 266 (759)
+..|.+-|.+++..+.. +.-.+|.-..|+|||..+-+++..+...+...++++++|+..-.....+... ...
T Consensus 321 ~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g----~~a 392 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTG----LTA 392 (720)
T ss_pred CCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcC----Ccc
Confidence 45789999999988753 5568899999999999888887777665444678999998877665554311 100
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEE
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKL 346 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rl 346 (759)
..+ ..+.. . .... . .. ... . .....++||||||+.+-. ..+.+.+..++...++
T Consensus 393 ~Ti-------h~lL~----~--~~~~--~---~~---~~~-~--~~~~~~llIvDEaSMvd~--~~~~~Ll~~~~~~~rl 446 (720)
T TIGR01448 393 STI-------HRLLG----Y--GPDT--F---RH---NHL-E--DPIDCDLLIVDESSMMDT--WLALSLLAALPDHARL 446 (720)
T ss_pred ccH-------HHHhh----c--cCCc--c---ch---hhh-h--ccccCCEEEEeccccCCH--HHHHHHHHhCCCCCEE
Confidence 000 00000 0 0000 0 00 000 0 123568999999999853 2345566677888899
Q ss_pred EEecCCCCC
Q 004347 347 LLTGTPLQN 355 (759)
Q Consensus 347 lLTgTPl~n 355 (759)
+|-|=|-|-
T Consensus 447 ilvGD~~QL 455 (720)
T TIGR01448 447 LLVGDTDQL 455 (720)
T ss_pred EEECccccc
Confidence 999987653
No 195
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.62 E-value=0.03 Score=51.79 Aligned_cols=106 Identities=19% Similarity=0.078 Sum_probs=58.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRA 287 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~ 287 (759)
+...++.-++|+|||..+-.++..+... ..+++++........+.........
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------------------------- 71 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------------------------- 71 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------------------------
Confidence 5667899999999998777777666532 2455555544333333222111100
Q ss_pred CCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC-hhhHHHHHHhcCC------CCcEEEEecCCCC
Q 004347 288 IGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN-PKCKLLKELKYIP------IGNKLLLTGTPLQ 354 (759)
Q Consensus 288 ~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~------~~~rllLTgTPl~ 354 (759)
..... ..........++|+||+|++.. ....+...+..+. ...++++|+++..
T Consensus 72 -----------~~~~~---~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLL---FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHH---HHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00000 1112233568999999999832 2234445555542 4556778877654
No 196
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.50 E-value=0.0098 Score=62.20 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCC
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNG 236 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~ 236 (759)
.+.+|.-++|+|||..|-++...+...+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 4568999999999999988887776544
No 197
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.38 E-value=0.021 Score=66.40 Aligned_cols=140 Identities=21% Similarity=0.199 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC---CCCeEEEECCccHHHHHHH-HHHhCCCceEE
Q 004347 192 SYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL---HGPYLVIAPLSTLSNWVNE-ISRFVPSVSAI 267 (759)
Q Consensus 192 pyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~---~~~~LIV~P~sll~~W~~E-~~~~~p~~~~~ 267 (759)
+.|..++...+. +.-.+|.-..|+|||.++..++..+..... ..++++++|+.--..=..| +......+..
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 789988887775 566789999999999998888887765332 2468999998754433333 3322211110
Q ss_pred EEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHH------HH-HhhhhcCccEEEEcCcccccChhhHHHHHHhcC
Q 004347 268 IYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSD------AR-KYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI 340 (759)
Q Consensus 268 ~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~------~~-~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l 340 (759)
...... ...+-..|...+... .. ..-...++++||||||-.+-. ..+.+.+..+
T Consensus 223 ----~~~~~~-------------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~--~l~~~ll~al 283 (586)
T TIGR01447 223 ----AEALIA-------------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL--PLMAKLLKAL 283 (586)
T ss_pred ----chhhhh-------------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH--HHHHHHHHhc
Confidence 000000 000001111111110 00 001123679999999998853 3455566778
Q ss_pred CCCcEEEEecCCCCC
Q 004347 341 PIGNKLLLTGTPLQN 355 (759)
Q Consensus 341 ~~~~rllLTgTPl~n 355 (759)
+...|++|.|=|.|-
T Consensus 284 ~~~~rlIlvGD~~QL 298 (586)
T TIGR01447 284 PPNTKLILLGDKNQL 298 (586)
T ss_pred CCCCEEEEECChhhC
Confidence 888899999987653
No 198
>PRK04296 thymidine kinase; Provisional
Probab=96.36 E-value=0.021 Score=56.57 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=27.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
.++.-+||.|||..++.++..+...+ .+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g--~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG--MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC--CeEEEEec
Confidence 46778899999999999988876653 57777765
No 199
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.31 E-value=0.028 Score=61.15 Aligned_cols=143 Identities=15% Similarity=0.278 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhcCCC---eEEEcCCCCcHHHHHHHHHHHHHhCCC--CCCeEEEECCccHHHHHHHHHHhCCCceEEE
Q 004347 194 QLKGVKWLISLWQNGLN---GILADQMGLGKTIQTIAFLAHLKGNGL--HGPYLVIAPLSTLSNWVNEISRFVPSVSAII 268 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~~---~ILademGlGKTl~ai~li~~l~~~~~--~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~ 268 (759)
|..++..+...+..+.. .++.-+.|+|||..+..++..+..... ..|.-...|......+..-...-.|++..+.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~ 107 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHIT 107 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEee
Confidence 45567777777777763 588999999999999999998877321 1232222233333333322233345544332
Q ss_pred EeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh----hcCccEEEEcCcccccC-hhhHHHHHHhcCCCC
Q 004347 269 YHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR----HYNWKYLVVDEGHRLKN-PKCKLLKELKYIPIG 343 (759)
Q Consensus 269 ~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~----~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~~ 343 (759)
..... +. .+.. -.++.+.++. +..++. .-+|.++||||||.+-. ....+.+.+...+..
T Consensus 108 ~~~~~--~~------------~~~~-~~I~vd~iR~-l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 108 RPFDE--KT------------GKFK-TAITVDEIRR-VGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred ccccc--cc------------cccc-ccCCHHHHHH-HHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 11000 00 0000 0122344432 234443 34789999999999953 223455666665544
Q ss_pred cE-EEEecCC
Q 004347 344 NK-LLLTGTP 352 (759)
Q Consensus 344 ~r-llLTgTP 352 (759)
.. +++|..|
T Consensus 172 ~~fiLit~~~ 181 (351)
T PRK09112 172 ALFILISHSS 181 (351)
T ss_pred ceEEEEECCh
Confidence 44 4555444
No 200
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.01 E-value=0.039 Score=50.54 Aligned_cols=44 Identities=25% Similarity=0.232 Sum_probs=32.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 253 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W 253 (759)
+...+|.-++|+|||..+..++..+...+ ..++++.+......|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccC
Confidence 45678899999999999888887766543 457777776554443
No 201
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.0088 Score=66.57 Aligned_cols=135 Identities=17% Similarity=0.129 Sum_probs=72.6
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC-CccHHHH----HHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCC
Q 004347 214 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP-LSTLSNW----VNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAI 288 (759)
Q Consensus 214 ademGlGKTl~ai~li~~l~~~~~~~~~LIV~P-~sll~~W----~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~ 288 (759)
-+.+|+|||+++.++|.++...|. +.+|..|. .+++..- .+-+..-+-....+.+.+..-.- +.-.+....
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgy-r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~i---kkvn~fseh 78 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGY-RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEI---KKVNNFSEH 78 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhch-hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeee---eeecccCcc
Confidence 367999999999999999888764 46666665 5555432 22221111011122222222111 111111123
Q ss_pred CCCCCEEEecHHHHHHHHHHh---------hhhcCccEEEEcCccccc---------------ChhhHHHHHHhcCCCCc
Q 004347 289 GPKFPIVVTSYEVALSDARKY---------LRHYNWKYLVVDEGHRLK---------------NPKCKLLKELKYIPIGN 344 (759)
Q Consensus 289 ~~~~~vvIttye~l~~~~~~~---------l~~~~~~~lIvDEaH~ik---------------n~~s~~~~~l~~l~~~~ 344 (759)
.....|+.||.+.+..++... |...+ =+++-||||++- |..+.+.-++..-+...
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~k-lvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~ 157 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQK-LVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNL 157 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCc-eEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCce
Confidence 346789999998887775221 22221 245669999983 23333444444445555
Q ss_pred EEEEecCCC
Q 004347 345 KLLLTGTPL 353 (759)
Q Consensus 345 rllLTgTPl 353 (759)
.+..|||-.
T Consensus 158 ~lef~at~~ 166 (812)
T COG3421 158 LLEFSATIP 166 (812)
T ss_pred eehhhhcCC
Confidence 566677643
No 202
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.057 Score=60.54 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCCC---eEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 194 QLKGVKWLISLWQNGLN---GILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~~---~ILademGlGKTl~ai~li~~l~~ 234 (759)
|...+..+.....++.- .|+.-+.|+|||..|..++..+..
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 44444444444444432 489999999999999998888765
No 203
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.87 E-value=0.09 Score=61.64 Aligned_cols=52 Identities=29% Similarity=0.272 Sum_probs=34.8
Q ss_pred cCccEEEEcCcccccChh-hHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhh
Q 004347 313 YNWKYLVVDEGHRLKNPK-CKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLL 364 (759)
Q Consensus 313 ~~~~~lIvDEaH~ikn~~-s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll 364 (759)
.+|+++||||+|++.+.. ..+.+.|.......+++|+.|-.+.-+.-|.|-+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC 170 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC 170 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe
Confidence 468999999999997533 3455555555666778888876555444444433
No 204
>PLN03025 replication factor C subunit; Provisional
Probab=95.85 E-value=0.092 Score=56.62 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=31.9
Q ss_pred CccEEEEcCcccccChh-hHHHHHHhcCCCCcEEEEecCCCCCCHHHHHh
Q 004347 314 NWKYLVVDEGHRLKNPK-CKLLKELKYIPIGNKLLLTGTPLQNNLAELWS 362 (759)
Q Consensus 314 ~~~~lIvDEaH~ikn~~-s~~~~~l~~l~~~~rllLTgTPl~n~~~el~s 362 (759)
+|+++|+||+|.+-... ..+.+.+..+....+++|++++...-+..|-+
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 58999999999996432 33444455555667788888765544444444
No 205
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.75 E-value=0.071 Score=55.79 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHhhcCC-CeEEEcCCCCcHHHHHHHHHHHHH
Q 004347 192 SYQLKGVKWLISLWQNGL-NGILADQMGLGKTIQTIAFLAHLK 233 (759)
Q Consensus 192 pyQ~~gv~~l~~~~~~~~-~~ILademGlGKTl~ai~li~~l~ 233 (759)
+.+..++..+......+. ..+|.-+.|+|||..+-.++..+.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 455566666655444444 467899999999988777665544
No 206
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.72 E-value=0.03 Score=59.29 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=27.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCC--CCeEEEE
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLH--GPYLVIA 245 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~--~~~LIV~ 245 (759)
+.+.+|.-++|+|||..|.++...+...+.. ++++.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 4467889999999999998888877765432 3444444
No 207
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.68 E-value=0.075 Score=62.67 Aligned_cols=150 Identities=19% Similarity=0.280 Sum_probs=90.7
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCCceEE
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVSAI 267 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~~~ 267 (759)
.|-.-|+.|+...+. ......|+.. +|+|||.+...++..|...| +.+|+.+=++ .+.|-.--+..+. +. +
T Consensus 669 ~LN~dQr~A~~k~L~--aedy~LI~GM-PGTGKTTtI~~LIkiL~~~g--kkVLLtsyThsAVDNILiKL~~~~--i~-~ 740 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALA--AEDYALILGM-PGTGKTTTISLLIKILVALG--KKVLLTSYTHSAVDNILIKLKGFG--IY-I 740 (1100)
T ss_pred hcCHHHHHHHHHHHh--ccchheeecC-CCCCchhhHHHHHHHHHHcC--CeEEEEehhhHHHHHHHHHHhccC--cc-e
Confidence 567789999877665 3344456666 89999999999999888865 5788888755 5788776666653 22 2
Q ss_pred EEeCChhH-HHHHHHhcCC-----------CCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHH
Q 004347 268 IYHGSKKE-RDEIRRKHMP-----------RAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLK 335 (759)
Q Consensus 268 ~~~g~~~~-r~~~~~~~~~-----------~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~ 335 (759)
.--|+... ...++..-.. ........||.+|.=-+. ...|...+|||+|||||-.+--+-+
T Consensus 741 lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~---~plf~~R~FD~cIiDEASQI~lP~~---- 813 (1100)
T KOG1805|consen 741 LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN---HPLFVNRQFDYCIIDEASQILLPLC---- 813 (1100)
T ss_pred eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC---chhhhccccCEEEEccccccccchh----
Confidence 22232211 1111111100 011235566666643222 2457777899999999988754332
Q ss_pred HHhcCCCCcEEEEecCCCC
Q 004347 336 ELKYIPIGNKLLLTGTPLQ 354 (759)
Q Consensus 336 ~l~~l~~~~rllLTgTPl~ 354 (759)
|--+...++..|-|-+.|
T Consensus 814 -LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 814 -LGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred -hhhhhhcceEEEeccccc
Confidence 233445567777776543
No 208
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.17 Score=55.65 Aligned_cols=131 Identities=13% Similarity=0.070 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCC--CCCCeEEEECCcc-H-HHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcC
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNG--LHGPYLVIAPLST-L-SNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHM 284 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~--~~~~~LIV~P~sl-l-~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~ 284 (759)
...++.-.+|+|||.++.-++.++.... ...++.+|+=..- . ..|+ +..|+-...+-+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv---------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV---------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce----------------
Confidence 3457888999999999888877766432 2345666655331 1 2222 444432111101
Q ss_pred CCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChh---hHHHHHHhcCCC--CcEEEEecCCCCCCHHH
Q 004347 285 PRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPK---CKLLKELKYIPI--GNKLLLTGTPLQNNLAE 359 (759)
Q Consensus 285 ~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~---s~~~~~l~~l~~--~~rllLTgTPl~n~~~e 359 (759)
.++.++..+...+. .+ .+.++||||++.+..... ..+...+..... ...|.|+||--++.+.+
T Consensus 237 ---------~~~~~~~~l~~~L~-~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 237 ---------KAIESFKDLKEEIT-QS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred ---------EeeCcHHHHHHHHH-Hh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 12234444433321 22 357999999999986432 233333333332 45689999988888887
Q ss_pred HHhhhhhccC
Q 004347 360 LWSLLHFILP 369 (759)
Q Consensus 360 l~sll~fl~p 369 (759)
++.-...+.+
T Consensus 305 ~~~~~~~~~~ 314 (388)
T PRK12723 305 IFHQFSPFSY 314 (388)
T ss_pred HHHHhcCCCC
Confidence 7766654433
No 209
>CHL00181 cbbX CbbX; Provisional
Probab=95.63 E-value=0.038 Score=58.53 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=27.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCC--CCeEEEE
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLH--GPYLVIA 245 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~--~~~LIV~ 245 (759)
+.+.+|.-++|+|||..|-+++..+...|.. ++++.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 4456899999999999999888877665432 3444444
No 210
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.56 E-value=0.072 Score=62.14 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=83.0
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC--CCCCeEEEECCccHHHHHHH-HHHhCCCceE
Q 004347 190 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG--LHGPYLVIAPLSTLSNWVNE-ISRFVPSVSA 266 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~--~~~~~LIV~P~sll~~W~~E-~~~~~p~~~~ 266 (759)
.-+.|+.++...+. ..-.+|.-..|+|||.++..++..+.... ...++++++|+.--..=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999987764 55678899999999999888888776532 23468889998765443333 2221111100
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH-------HHhhhhcCccEEEEcCcccccChhhHHHHHHhc
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA-------RKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKY 339 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~-------~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~ 339 (759)
....+. ....-..|...+.... .+.-...++++||||||..+- ...+...+..
T Consensus 229 -----~~~~~~-------------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll~a 288 (615)
T PRK10875 229 -----TDEQKK-------------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--LPMMARLIDA 288 (615)
T ss_pred -----chhhhh-------------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--HHHHHHHHHh
Confidence 000000 0000011111111100 000122356999999999884 3445566777
Q ss_pred CCCCcEEEEecCCCCC
Q 004347 340 IPIGNKLLLTGTPLQN 355 (759)
Q Consensus 340 l~~~~rllLTgTPl~n 355 (759)
++...|++|-|=|-|-
T Consensus 289 l~~~~rlIlvGD~~QL 304 (615)
T PRK10875 289 LPPHARVIFLGDRDQL 304 (615)
T ss_pred cccCCEEEEecchhhc
Confidence 8888999999987653
No 211
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.56 E-value=0.1 Score=56.61 Aligned_cols=42 Identities=21% Similarity=0.133 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcCC--CeEEEcCCCCcHHHHHHHHHHHHHhCC
Q 004347 195 LKGVKWLISLWQNGL--NGILADQMGLGKTIQTIAFLAHLKGNG 236 (759)
Q Consensus 195 ~~gv~~l~~~~~~~~--~~ILademGlGKTl~ai~li~~l~~~~ 236 (759)
...+.++......+. +.++.-+.|+|||..+.+++..+...+
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 334555555445554 679999999999999999988876543
No 212
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=95.30 E-value=0.57 Score=52.09 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=106.8
Q ss_pred HHHHHHH-HHHHHh--hCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 515 KFRLLDR-LLARLF--ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 515 K~~~L~~-lL~~l~--~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
++....+ +|+.+. ....++|||.++--..-.|..+|...++.++.++--++..+-.++-..|.. +...++|.|-|
T Consensus 282 Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~--G~~~iLL~TER 359 (442)
T PF06862_consen 282 RFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH--GRKPILLYTER 359 (442)
T ss_pred HHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc--CCceEEEEEhH
Confidence 5555544 667666 345789999887666677889999999999999999999999999999997 45666676655
Q ss_pred cc-cCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCC----CCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcC
Q 004347 592 AG-GLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQ----TKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGK 665 (759)
Q Consensus 592 ag-g~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ----~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~vi~~ 665 (759)
+- =.=..+.++.+||+|.+|-+|.-|..-+.-...-.+ ...+.|.-|+++ .|..-++|...-.+..+++-++
T Consensus 360 ~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk--~D~~~LErIVGt~ra~~ml~~~ 436 (442)
T PF06862_consen 360 FHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK--YDALRLERIVGTERASKMLQSD 436 (442)
T ss_pred HhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH--hHHHHHHHHhCHHHHHHHhcCC
Confidence 43 233456779999999999999999877755544332 344666666665 6776677766666655555443
No 213
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.29 E-value=0.23 Score=54.96 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~ 235 (759)
.|+.-+.|+|||..|.+++..+...
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC
Confidence 5788999999999999998887654
No 214
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.29 E-value=0.27 Score=57.52 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 194 QLKGVKWLISLWQNGL--N-GILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~--~-~ILademGlGKTl~ai~li~~l~~~ 235 (759)
|...+..+...+..+. + .|+.-+.|+|||..+-.++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4444445555444443 2 3789999999999999998887763
No 215
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.28 E-value=1.5 Score=52.95 Aligned_cols=67 Identities=16% Similarity=0.073 Sum_probs=46.5
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC-C-CCCCeEEEECCccH-HHHHHHHHHhC
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-G-LHGPYLVIAPLSTL-SNWVNEISRFV 261 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~-~-~~~~~LIV~P~sll-~~W~~E~~~~~ 261 (759)
.|-|-|.++|.+. ....++-...|+|||.+.+.-+++|... + ....+|+|+-+.-. ......+.+..
T Consensus 9 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 5889999988643 3456666779999999999999999864 3 23458888885533 33444444443
No 216
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.18 E-value=0.22 Score=47.95 Aligned_cols=141 Identities=21% Similarity=0.267 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHH-HhCCCceEEEE
Q 004347 194 QLKGVKWLISLWQNGL--N-GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS-RFVPSVSAIIY 269 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~--~-~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~-~~~p~~~~~~~ 269 (759)
|.+.+..+...+.++. . -|+..+.|.||+..|..++..+........ |-.....=. .+. .-.|++..+
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-----~c~~c~~c~-~~~~~~~~d~~~~-- 73 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-----PCGECRSCR-RIEEGNHPDFIII-- 73 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT-------SSSHHHH-HHHTT-CTTEEEE--
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-----CCCCCHHHH-HHHhccCcceEEE--
Confidence 5566677777666653 3 388888999999999999999887654434 322222222 232 223333322
Q ss_pred eCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh----hcCccEEEEcCccccc-ChhhHHHHHHhcCCCCc
Q 004347 270 HGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR----HYNWKYLVVDEGHRLK-NPKCKLLKELKYIPIGN 344 (759)
Q Consensus 270 ~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~----~~~~~~lIvDEaH~ik-n~~s~~~~~l~~l~~~~ 344 (759)
...... ..+ .-+.++ ++..++. ..+++++|||+||++. +....+.+.|...+...
T Consensus 74 ~~~~~~----------------~~i---~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~ 133 (162)
T PF13177_consen 74 KPDKKK----------------KSI---KIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENT 133 (162)
T ss_dssp ETTTSS----------------SSB---SHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTE
T ss_pred eccccc----------------chh---hHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCE
Confidence 222110 000 113333 2222222 2358899999999996 44456777777778888
Q ss_pred EEEEecCCCCCCHHHHHh
Q 004347 345 KLLLTGTPLQNNLAELWS 362 (759)
Q Consensus 345 rllLTgTPl~n~~~el~s 362 (759)
+++|+.+-..+-+.-+.|
T Consensus 134 ~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 134 YFILITNNPSKILPTIRS 151 (162)
T ss_dssp EEEEEES-GGGS-HHHHT
T ss_pred EEEEEECChHHChHHHHh
Confidence 888888755555544444
No 217
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.09 E-value=0.19 Score=54.15 Aligned_cols=137 Identities=14% Similarity=0.075 Sum_probs=75.5
Q ss_pred ccchhHHHHHHHHHHHhhcCCC-eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE
Q 004347 189 KLKSYQLKGVKWLISLWQNGLN-GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI 267 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~-~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~ 267 (759)
.++|+|.....-++.. .+-.. -++.-+.|+|||..|..++..+.-.++.+. .|-..+.....-...-+|++..+
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~----~~Cg~C~sC~~~~~g~HPD~~~i 77 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGG----GACGSCKGCQLLRAGSHPDNFVL 77 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHhcCCCCCEEEE
Confidence 3578888888877753 11122 368889999999999999999876432211 13333443333223334444333
Q ss_pred EEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh----hcCccEEEEcCcccccC-hhhHHHHHHhcCCC
Q 004347 268 IYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR----HYNWKYLVVDEGHRLKN-PKCKLLKELKYIPI 342 (759)
Q Consensus 268 ~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~----~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~ 342 (759)
.-.+... . .+-+.++.- ...+. .-+++++|||+||++.. ....+.+.+..-+.
T Consensus 78 ~~~~~~~------------------~---i~id~iR~l-~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~ 135 (328)
T PRK05707 78 EPEEADK------------------T---IKVDQVREL-VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSG 135 (328)
T ss_pred eccCCCC------------------C---CCHHHHHHH-HHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCC
Confidence 2111100 0 111222221 12222 23689999999999964 34456666666555
Q ss_pred CcEEEEecCC
Q 004347 343 GNKLLLTGTP 352 (759)
Q Consensus 343 ~~rllLTgTP 352 (759)
...++|+.+-
T Consensus 136 ~~~fiL~t~~ 145 (328)
T PRK05707 136 DTVLLLISHQ 145 (328)
T ss_pred CeEEEEEECC
Confidence 5555565543
No 218
>PRK06526 transposase; Provisional
Probab=95.07 E-value=0.098 Score=54.29 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHH
Q 004347 196 KGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 258 (759)
Q Consensus 196 ~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~ 258 (759)
.+..|+- .+.|.+|.-++|+|||..+.++...+...|. +++++ ....|..++.
T Consensus 90 ~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~~g~--~v~f~----t~~~l~~~l~ 142 (254)
T PRK06526 90 GTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQAGH--RVLFA----TAAQWVARLA 142 (254)
T ss_pred hcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHHCCC--chhhh----hHHHHHHHHH
Confidence 3445664 4778899999999999999999888877642 44443 3355666664
No 219
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.03 E-value=0.15 Score=58.07 Aligned_cols=43 Identities=23% Similarity=0.074 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhhcCC---CeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 193 YQLKGVKWLISLWQNGL---NGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 193 yQ~~gv~~l~~~~~~~~---~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
-|...+..+...+.++. ..|+.-+.|+|||..|-.++..+...
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34455555554444443 56899999999999999998888653
No 220
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.93 E-value=0.23 Score=57.49 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~ 235 (759)
-|+.-..|+|||..+..++..|...
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3888999999999999999888753
No 221
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.86 E-value=0.34 Score=56.26 Aligned_cols=41 Identities=32% Similarity=0.312 Sum_probs=27.6
Q ss_pred cCccEEEEcCcccccC-hhhHHHHHHhcCCCCcEEEEecCCC
Q 004347 313 YNWKYLVVDEGHRLKN-PKCKLLKELKYIPIGNKLLLTGTPL 353 (759)
Q Consensus 313 ~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~~~rllLTgTPl 353 (759)
.+++++||||+|++-. ....+.+.+...+..-+++|++|-.
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 3678999999999853 3344555555555555677777643
No 222
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.80 E-value=2 Score=51.79 Aligned_cols=67 Identities=16% Similarity=0.066 Sum_probs=47.4
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC-C-CCCCeEEEECCcc-HHHHHHHHHHhC
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-G-LHGPYLVIAPLST-LSNWVNEISRFV 261 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~-~-~~~~~LIV~P~sl-l~~W~~E~~~~~ 261 (759)
.|-|-|.++|.+- ....++....|+|||.+.+.-+++|... + ....+|+|+.+.- .......+.+..
T Consensus 4 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVAAP------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHcCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 5889999988632 4466777779999999999999999874 3 2345788888553 344444455544
No 223
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.37 Score=57.73 Aligned_cols=42 Identities=36% Similarity=0.340 Sum_probs=27.7
Q ss_pred cCccEEEEcCcccccC-hhhHHHHHHhcCCCCcEEEEecCCCC
Q 004347 313 YNWKYLVVDEGHRLKN-PKCKLLKELKYIPIGNKLLLTGTPLQ 354 (759)
Q Consensus 313 ~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~~~rllLTgTPl~ 354 (759)
.+|.++||||+|++.. ....+.+.+...+...+++|..|-..
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 4689999999999953 23344555555556667777655433
No 224
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.68 E-value=0.23 Score=54.56 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhhcCC--Ce-EEEcCCCCcHHHHHHHHHHHHHh
Q 004347 193 YQLKGVKWLISLWQNGL--NG-ILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 193 yQ~~gv~~l~~~~~~~~--~~-ILademGlGKTl~ai~li~~l~~ 234 (759)
-|...+..+...+..+. +. ++.-+.|+|||..+-+++..+..
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 35555665555555442 33 89999999999999988888763
No 225
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.64 E-value=0.39 Score=55.74 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCcHHHHHHHHHHHHHh
Q 004347 194 QLKGVKWLISLWQNGL--NG-ILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~--~~-ILademGlGKTl~ai~li~~l~~ 234 (759)
|...+..|...+..+. +. |+.-..|+|||..+..++..+..
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5555555555544442 33 78999999999999999988775
No 226
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.63 E-value=0.56 Score=50.38 Aligned_cols=145 Identities=16% Similarity=0.147 Sum_probs=80.9
Q ss_pred cchhHHHHHHHHHHHhhcCC--Ce-EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceE
Q 004347 190 LKSYQLKGVKWLISLWQNGL--NG-ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSA 266 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~--~~-ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~ 266 (759)
++|+|...-..+...+.+++ .+ ++.-+.|+||+..|..++..+......+- -|-..+..-..-...-+|++..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~----~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD----QPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHhcCCCCCEEE
Confidence 57888887777877776654 33 67889999999999999999886432110 1222222222211223444433
Q ss_pred EEE-eCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhh----hhcCccEEEEcCcccccC-hhhHHHHHHhcC
Q 004347 267 IIY-HGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYL----RHYNWKYLVVDEGHRLKN-PKCKLLKELKYI 340 (759)
Q Consensus 267 ~~~-~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l----~~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l 340 (759)
+.- .|.. ..-+.++.- ...+ ...+++++|||+||++.. ....+.+.|..-
T Consensus 79 i~p~~~~~-----------------------I~id~iR~l-~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP 134 (325)
T PRK06871 79 LEPIDNKD-----------------------IGVDQVREI-NEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP 134 (325)
T ss_pred EccccCCC-----------------------CCHHHHHHH-HHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC
Confidence 211 0100 112223221 1222 224689999999999974 334556666665
Q ss_pred CCCcEEEEecCCCCCCHHHHHh
Q 004347 341 PIGNKLLLTGTPLQNNLAELWS 362 (759)
Q Consensus 341 ~~~~rllLTgTPl~n~~~el~s 362 (759)
+....++|+.+-...-+.-+.|
T Consensus 135 p~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 135 RPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred CCCeEEEEEECChHhCchHHHh
Confidence 6666677766643444444443
No 227
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.61 E-value=0.24 Score=56.77 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcC--CC-eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 194 QLKGVKWLISLWQNG--LN-GILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~--~~-~ILademGlGKTl~ai~li~~l~~~ 235 (759)
|...+..+...+.++ .+ -|+.-..|+|||..|-.++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444445555444333 23 3889999999999999998888653
No 228
>PRK08181 transposase; Validated
Probab=94.44 E-value=0.44 Score=49.80 Aligned_cols=53 Identities=25% Similarity=0.115 Sum_probs=37.5
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEE
Q 004347 190 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 244 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV 244 (759)
+..-|..++..+-.....+.|.+|.-++|+|||..+.++...+...| .+++++
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g--~~v~f~ 140 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG--WRVLFT 140 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC--Cceeee
Confidence 44566666644432235678899999999999999999988887764 344444
No 229
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.42 E-value=3.8 Score=49.55 Aligned_cols=53 Identities=25% Similarity=0.089 Sum_probs=40.2
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC--CCCeEEEECC
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL--HGPYLVIAPL 247 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~--~~~~LIV~P~ 247 (759)
.|-|-|.++|.+. ....++-...|+|||.+.+.-++++...+. ...+|+++-+
T Consensus 4 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVKTT------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHhCC------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 5889999988743 345666677999999999999999987432 2457777775
No 230
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.38 E-value=0.32 Score=55.65 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhcCCC--e-EEEcCCCCcHHHHHHHHHHHHHhCC
Q 004347 194 QLKGVKWLISLWQNGLN--G-ILADQMGLGKTIQTIAFLAHLKGNG 236 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~~--~-ILademGlGKTl~ai~li~~l~~~~ 236 (759)
|...+..+......+.- . |+.-+.|+|||..+.+++..+...+
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 44445555544444433 3 8999999999999999998887544
No 231
>PF13245 AAA_19: Part of AAA domain
Probab=94.36 E-value=0.15 Score=42.20 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=33.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhC--CCCCCeEEEECCccHHH
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGN--GLHGPYLVIAPLSTLSN 252 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~--~~~~~~LIV~P~sll~~ 252 (759)
-.++-...|+|||.+++..+.++... ....++||++|+....+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 34568889999999999888888742 23568999999775443
No 232
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.36 E-value=0.43 Score=51.17 Aligned_cols=154 Identities=15% Similarity=0.142 Sum_probs=86.1
Q ss_pred CccchhHHHHHHHHHHHhhcCC---CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGL---NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSV 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~---~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~ 264 (759)
..++|.|......+...+.+++ .-++..+.|+||+..|.+++..+...+....- .|+ .-+|.. ..-+|++
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~--~c~---~c~~~~--~g~HPD~ 75 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA--AQR---TRQLIA--AGTHPDL 75 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC--cch---HHHHHh--cCCCCCE
Confidence 4688999999988888776654 34788899999999999999988865322100 121 112221 2234555
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh----hcCccEEEEcCcccccC-hhhHHHHHHhc
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR----HYNWKYLVVDEGHRLKN-PKCKLLKELKY 339 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~----~~~~~~lIvDEaH~ikn-~~s~~~~~l~~ 339 (759)
.++-........ ..+.. ++.+.++.- ..++. .-+++++|||+||++.. ....+.+.|..
T Consensus 76 ~~i~~~p~~~~~------------k~~~~---I~idqIR~l-~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE 139 (319)
T PRK08769 76 QLVSFIPNRTGD------------KLRTE---IVIEQVREI-SQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE 139 (319)
T ss_pred EEEecCCCcccc------------ccccc---ccHHHHHHH-HHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC
Confidence 444211110000 00011 123333322 22222 12578999999999963 33456666666
Q ss_pred CCCCcEEEEecCCCCCCHHHHHhhh
Q 004347 340 IPIGNKLLLTGTPLQNNLAELWSLL 364 (759)
Q Consensus 340 l~~~~rllLTgTPl~n~~~el~sll 364 (759)
-+....++|++.-...-+.-+-|=.
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC 164 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC 164 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh
Confidence 6666667777664444444444433
No 233
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.31 E-value=0.68 Score=50.13 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=84.9
Q ss_pred ccchhHHHHHHHHHHHhhcCCC---eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCce
Q 004347 189 KLKSYQLKGVKWLISLWQNGLN---GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVS 265 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~---~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~ 265 (759)
.++|+|......+...+.+++- -+++-+-|+||+..|.+++.++.-.+..+. .|-..+..-..-..--+|++.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~----~~Cg~C~sC~~~~~g~HPD~~ 77 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH----KSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCCCCCEE
Confidence 4689998888888887776543 368899999999999999999876432111 022233332222223345554
Q ss_pred EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh----hcCccEEEEcCcccccC-hhhHHHHHHhcC
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR----HYNWKYLVVDEGHRLKN-PKCKLLKELKYI 340 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~----~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l 340 (759)
.+.-.+++. .++-+.++.-. +.+. .-+++++|||+|+++.. ....+.+.|..-
T Consensus 78 ~i~p~~~~~---------------------~I~idqiR~l~-~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP 135 (334)
T PRK07993 78 TLTPEKGKS---------------------SLGVDAVREVT-EKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP 135 (334)
T ss_pred EEecccccc---------------------cCCHHHHHHHH-HHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC
Confidence 332111100 11233333221 2221 23689999999999974 444566666665
Q ss_pred CCCcEEEEecCCCCCCHHHHHh
Q 004347 341 PIGNKLLLTGTPLQNNLAELWS 362 (759)
Q Consensus 341 ~~~~rllLTgTPl~n~~~el~s 362 (759)
+....++|++.-...-+.-+.|
T Consensus 136 p~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 136 PENTWFFLACREPARLLATLRS 157 (334)
T ss_pred CCCeEEEEEECChhhChHHHHh
Confidence 6666666666543444444444
No 234
>PRK14974 cell division protein FtsY; Provisional
Probab=94.25 E-value=0.58 Score=50.55 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=31.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC----ccHHHHHHHHH
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL----STLSNWVNEIS 258 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~----sll~~W~~E~~ 258 (759)
-.++.-..|+|||.++..++..+...+ .++++++.. ....||..-..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g--~~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNG--FSVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcCcHHHHHHHHHHHH
Confidence 356788999999999888888777653 466666543 23355544333
No 235
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.19 E-value=0.64 Score=50.86 Aligned_cols=124 Identities=14% Similarity=0.190 Sum_probs=67.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc----cHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCC
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS----TLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMP 285 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s----ll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~ 285 (759)
...|.-.+|+|||.++..++..+...+ .++.+|.--. .+.||.. |...
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~----yae~---------------------- 294 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQD----YVKT---------------------- 294 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHH----Hhhh----------------------
Confidence 346778899999999988888776543 4566665522 3445543 3211
Q ss_pred CCCCCCCCEE-EecHHHHHHHHHHhhhh-cCccEEEEcCcccccChhhH---HHHHHhcCCC-CcEEEEecCCCCCCHHH
Q 004347 286 RAIGPKFPIV-VTSYEVALSDARKYLRH-YNWKYLVVDEGHRLKNPKCK---LLKELKYIPI-GNKLLLTGTPLQNNLAE 359 (759)
Q Consensus 286 ~~~~~~~~vv-Ittye~l~~~~~~~l~~-~~~~~lIvDEaH~ikn~~s~---~~~~l~~l~~-~~rllLTgTPl~n~~~e 359 (759)
...+++ +.+...+...+ ..+.. .++++||||-+=+.-+.... +.+.+..... ...|.|+||--++.+.+
T Consensus 295 ----lgipv~v~~d~~~L~~aL-~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~ 369 (436)
T PRK11889 295 ----IGFEVIAVRDEAAMTRAL-TYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 369 (436)
T ss_pred ----cCCcEEecCCHHHHHHHH-HHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHH
Confidence 112232 23444444333 33332 36899999999775533222 2222222222 23356778766666666
Q ss_pred HHhhhhh
Q 004347 360 LWSLLHF 366 (759)
Q Consensus 360 l~sll~f 366 (759)
+...++-
T Consensus 370 i~~~F~~ 376 (436)
T PRK11889 370 IITNFKD 376 (436)
T ss_pred HHHHhcC
Confidence 6555544
No 236
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.12 E-value=0.99 Score=48.38 Aligned_cols=150 Identities=14% Similarity=0.074 Sum_probs=86.8
Q ss_pred ccchhHHHHHHHHHHHhhcCC---CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCce
Q 004347 189 KLKSYQLKGVKWLISLWQNGL---NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVS 265 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~---~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~ 265 (759)
.++|.|......+...+.+++ .-++..+.|+||+..|..++..+.-..... .|-..+..-..-...-+|++.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-----~~Cg~C~sC~~~~~g~HPD~~ 77 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-----EACGFCHSCELMQSGNHPDLH 77 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-----CCCCCCHHHHHHHcCCCCCEE
Confidence 467888888888887766554 347889999999999999999887643211 132233332222223345544
Q ss_pred EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh----hcCccEEEEcCcccccC-hhhHHHHHHhcC
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR----HYNWKYLVVDEGHRLKN-PKCKLLKELKYI 340 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~----~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l 340 (759)
.+.-.+.. + . ++-+.++. +..++. ..+++++|||+||++.. ....+.+.+..-
T Consensus 78 ~i~p~~~~-----------------~-~---I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP 135 (319)
T PRK06090 78 VIKPEKEG-----------------K-S---ITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP 135 (319)
T ss_pred EEecCcCC-----------------C-c---CCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC
Confidence 33211100 0 0 12333322 222322 23589999999999963 344566666666
Q ss_pred CCCcEEEEecCCCCCCHHHHHhhhh
Q 004347 341 PIGNKLLLTGTPLQNNLAELWSLLH 365 (759)
Q Consensus 341 ~~~~rllLTgTPl~n~~~el~sll~ 365 (759)
+....++|+++-...-+..+.|-..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcce
Confidence 6666666666644444555555443
No 237
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.11 E-value=0.53 Score=49.49 Aligned_cols=133 Identities=19% Similarity=0.218 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHhhcC-----CCeEEEcCCCCcHHHHHHHHHHHHHhC-C---CCCCe-EEEECC-ccHHHHHHHHHHh
Q 004347 192 SYQLKGVKWLISLWQNG-----LNGILADQMGLGKTIQTIAFLAHLKGN-G---LHGPY-LVIAPL-STLSNWVNEISRF 260 (759)
Q Consensus 192 pyQ~~gv~~l~~~~~~~-----~~~ILademGlGKTl~ai~li~~l~~~-~---~~~~~-LIV~P~-sll~~W~~E~~~~ 260 (759)
|.=.+++..|-.++... .|.+|.-++|-|||..+=-|....... . ..-|+ +|-+|. .........|...
T Consensus 40 ~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 40 PRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 33345566666655432 456888999999997654444322211 0 11243 333442 2334444444332
Q ss_pred CCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC-h---hhHHHHH
Q 004347 261 VPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN-P---KCKLLKE 336 (759)
Q Consensus 261 ~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn-~---~s~~~~~ 336 (759)
.. .. |. +. .+-..........|..++..+|||||.|++.. . .......
T Consensus 120 lg-aP---~~-------------------~~-----~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~ 171 (302)
T PF05621_consen 120 LG-AP---YR-------------------PR-----DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNA 171 (302)
T ss_pred hC-cc---cC-------------------CC-----CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHH
Confidence 10 00 00 00 01112222334678889999999999999742 2 2334555
Q ss_pred HhcCCCCcE--EEEecCC
Q 004347 337 LKYIPIGNK--LLLTGTP 352 (759)
Q Consensus 337 l~~l~~~~r--llLTgTP 352 (759)
++.+...-+ +.+.||+
T Consensus 172 LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 172 LKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHhhccCCCeEEeccH
Confidence 555544433 6677886
No 238
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.11 E-value=0.6 Score=56.45 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~ 234 (759)
-||.-..|+|||..+..|+..|..
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 478999999999999999888875
No 239
>PF13173 AAA_14: AAA domain
Probab=94.10 E-value=0.31 Score=44.80 Aligned_cols=41 Identities=24% Similarity=0.176 Sum_probs=28.6
Q ss_pred CccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecCCCCC
Q 004347 314 NWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQN 355 (759)
Q Consensus 314 ~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTPl~n 355 (759)
+-.+|++||+|++.+....+-..+... ...++++||+-...
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSSSSL 101 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccchHH
Confidence 558999999999987554444444433 45689999985433
No 240
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.06 E-value=1.2 Score=52.29 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 194 QLKGVKWLISLWQNGL---NGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~---~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
|...+..|...+..++ ..|+.-..|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3444444444334333 34889999999999999888887653
No 241
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.99 E-value=0.72 Score=49.91 Aligned_cols=132 Identities=18% Similarity=0.129 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHhhcCC--Ce-EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEE
Q 004347 193 YQLKGVKWLISLWQNGL--NG-ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIY 269 (759)
Q Consensus 193 yQ~~gv~~l~~~~~~~~--~~-ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~ 269 (759)
.|...+..+...+..+. +. |+.-+.|+|||..+..++..+......+. .|-..+.....-....+|++..+..
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~----~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGV----EPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCcCHHHHHHhcCCCCCEEEecc
Confidence 45555666666555442 34 89999999999999999888875431111 1333334443334445566555443
Q ss_pred eCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh----hcCccEEEEcCcccccC-hhhHHHHHHhcCCCCc
Q 004347 270 HGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR----HYNWKYLVVDEGHRLKN-PKCKLLKELKYIPIGN 344 (759)
Q Consensus 270 ~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~----~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~~~ 344 (759)
.|.. ++.+.++.-. ..+. .-+++++||||||++.. ....+.+.+...+...
T Consensus 86 ~~~~-----------------------i~id~ir~l~-~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~ 141 (329)
T PRK08058 86 DGQS-----------------------IKKDQIRYLK-EEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGT 141 (329)
T ss_pred cccc-----------------------CCHHHHHHHH-HHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCc
Confidence 3221 1123333222 2221 23578999999999964 3344555555656666
Q ss_pred EEEEecCC
Q 004347 345 KLLLTGTP 352 (759)
Q Consensus 345 rllLTgTP 352 (759)
.++|+.+-
T Consensus 142 ~~Il~t~~ 149 (329)
T PRK08058 142 TAILLTEN 149 (329)
T ss_pred eEEEEeCC
Confidence 67776653
No 242
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.98 E-value=0.52 Score=52.79 Aligned_cols=132 Identities=18% Similarity=0.204 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHH-hCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPR 286 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~-~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~ 286 (759)
+...+++-.+|+|||.+++.++..+. ..+ ..++.+|+-..--..=..++..|.-..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~D~~r~~a~eqL~~~a~~~---------------------- 277 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITLDTYRIGAVEQLKTYAKIM---------------------- 277 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEECCccHHHHHHHHHHHHHHh----------------------
Confidence 34457788899999999998888776 332 245555554221000012233332100
Q ss_pred CCCCCCC-EEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhh---HHHHHHhc--CCCCcEEEEecCCCCCCHHHH
Q 004347 287 AIGPKFP-IVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKC---KLLKELKY--IPIGNKLLLTGTPLQNNLAEL 360 (759)
Q Consensus 287 ~~~~~~~-vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s---~~~~~l~~--l~~~~rllLTgTPl~n~~~el 360 (759)
..+ .++.+...+...+ ..+ .++++||||-+-+...... .+...+.. .+....++|++|+-++.+.++
T Consensus 278 ----~vp~~~~~~~~~l~~~l-~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 278 ----GIPVEVVYDPKELAKAL-EQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred ----CCceEccCCHHhHHHHH-HHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 011 1122223232222 112 2579999999977543222 12222221 233456899999988888888
Q ss_pred HhhhhhccC
Q 004347 361 WSLLHFILP 369 (759)
Q Consensus 361 ~sll~fl~p 369 (759)
+..++.+.+
T Consensus 351 ~~~f~~~~~ 359 (424)
T PRK05703 351 YKHFSRLPL 359 (424)
T ss_pred HHHhCCCCC
Confidence 777766554
No 243
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.97 E-value=0.4 Score=52.52 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHhhcCC---CeEEEcCCCCcHHHHHHHHHHHHHhCCCC--------CCeEEEECCccHHHHHHHHHHhC
Q 004347 193 YQLKGVKWLISLWQNGL---NGILADQMGLGKTIQTIAFLAHLKGNGLH--------GPYLVIAPLSTLSNWVNEISRFV 261 (759)
Q Consensus 193 yQ~~gv~~l~~~~~~~~---~~ILademGlGKTl~ai~li~~l~~~~~~--------~~~LIV~P~sll~~W~~E~~~~~ 261 (759)
-|..++..+...+.+++ .-|+.-+.|+|||..|.+++..+...... ...|-+|+..-.-.|. ...-+
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i--~~~~H 100 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI--AAGAH 100 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH--HccCC
Confidence 36666777777666653 24788999999999999999999864321 1234445533222232 23335
Q ss_pred CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh----hcCccEEEEcCcccccC-hhhHHHHH
Q 004347 262 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR----HYNWKYLVVDEGHRLKN-PKCKLLKE 336 (759)
Q Consensus 262 p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~----~~~~~~lIvDEaH~ikn-~~s~~~~~ 336 (759)
|++.++.-..+.... . ....| +.+.++.- ..++. .-+|.++||||+|++-. ....+.+.
T Consensus 101 PDl~~i~~~~~~~~~-~-----------~~~~I---~VdqiR~l-~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~ 164 (365)
T PRK07471 101 GGLLTLERSWNEKGK-R-----------LRTVI---TVDEVREL-ISFFGLTAAEGGWRVVIVDTADEMNANAANALLKV 164 (365)
T ss_pred CCeEEEecccccccc-c-----------ccccc---cHHHHHHH-HHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHH
Confidence 665544321111000 0 00112 23443322 23332 34689999999999852 33345566
Q ss_pred HhcCCCCcEE-EEecCC
Q 004347 337 LKYIPIGNKL-LLTGTP 352 (759)
Q Consensus 337 l~~l~~~~rl-lLTgTP 352 (759)
+...+....+ ++|-.|
T Consensus 165 LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 165 LEEPPARSLFLLVSHAP 181 (365)
T ss_pred HhcCCCCeEEEEEECCc
Confidence 6665544444 444444
No 244
>PHA02533 17 large terminase protein; Provisional
Probab=93.96 E-value=0.29 Score=56.36 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=77.7
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH-HHHHHHHh---CCC
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN-WVNEISRF---VPS 263 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~-W~~E~~~~---~p~ 263 (759)
-.|.|+|..-+..+.. ++-.++.-.=..|||..+.+++.++.-......+++++|..-... -.+.++.. .|.
T Consensus 58 f~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred cCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 3688999988877632 333356666789999987765544433333457888888442211 11233222 232
Q ss_pred c-eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHh-cCC
Q 004347 264 V-SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELK-YIP 341 (759)
Q Consensus 264 ~-~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~-~l~ 341 (759)
. ...+...+ +. .+ ...+...|.+.|-+ ....+..+.+++|+||+|.+++.. .+..++. .+.
T Consensus 134 l~~~~i~~~~---~~-----~I--~l~NGS~I~~lss~------~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~la 196 (534)
T PHA02533 134 FLQPGIVEWN---KG-----SI--ELENGSKIGAYASS------PDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVIS 196 (534)
T ss_pred HhhcceeecC---cc-----EE--EeCCCCEEEEEeCC------CCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHH
Confidence 1 10000000 00 00 00122233232222 123456678899999999998753 2222222 122
Q ss_pred --CCcEEEEecCCC-CCCHHHHH
Q 004347 342 --IGNKLLLTGTPL-QNNLAELW 361 (759)
Q Consensus 342 --~~~rllLTgTPl-~n~~~el~ 361 (759)
...++.+..||- .|+.-++|
T Consensus 197 sg~~~r~iiiSTp~G~n~fye~~ 219 (534)
T PHA02533 197 SGRSSKIIITSTPNGLNHFYDIW 219 (534)
T ss_pred cCCCceEEEEECCCchhhHHHHH
Confidence 224688888884 23344444
No 245
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.93 E-value=0.38 Score=56.12 Aligned_cols=135 Identities=20% Similarity=0.184 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCcHHHHHHHHHHHHHhCCC--C-CCeEEEECCccHHHHHHHHHHhCCCceEE
Q 004347 194 QLKGVKWLISLWQNGL---NGILADQMGLGKTIQTIAFLAHLKGNGL--H-GPYLVIAPLSTLSNWVNEISRFVPSVSAI 267 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~---~~ILademGlGKTl~ai~li~~l~~~~~--~-~~~LIV~P~sll~~W~~E~~~~~p~~~~~ 267 (759)
|...+..+...+..++ ..||.-..|+|||..|..++..+...+. . +|.+- |...+.+...-....+|++ +
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~--~cg~c~~C~~i~~g~h~Dv--~ 104 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID--LCGVGEHCQAIMEGRHVDV--L 104 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc--cCcccHHHHHHhcCCCCce--E
Confidence 4455555555555443 3588889999999999999988875432 1 34332 2233343322222222332 2
Q ss_pred EEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhh----hhcCccEEEEcCcccccC-hhhHHHHHHhcCCC
Q 004347 268 IYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYL----RHYNWKYLVVDEGHRLKN-PKCKLLKELKYIPI 342 (759)
Q Consensus 268 ~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l----~~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~ 342 (759)
.+.... .+..+.++.-. ..+ ..-.++++||||+|.+.. ....+.+.|...+.
T Consensus 105 e~~a~s----------------------~~gvd~IReIi-e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~ 161 (598)
T PRK09111 105 EMDAAS----------------------HTGVDDIREII-ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPP 161 (598)
T ss_pred Eecccc----------------------cCCHHHHHHHH-HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCC
Confidence 221110 01122222111 111 123578999999999963 23345555555556
Q ss_pred CcEEEEecCCCCC
Q 004347 343 GNKLLLTGTPLQN 355 (759)
Q Consensus 343 ~~rllLTgTPl~n 355 (759)
..+++|+.|-...
T Consensus 162 ~~~fIl~tte~~k 174 (598)
T PRK09111 162 HVKFIFATTEIRK 174 (598)
T ss_pred CeEEEEEeCChhh
Confidence 6666666654443
No 246
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.88 E-value=0.76 Score=52.91 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcCCC---eEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 194 QLKGVKWLISLWQNGLN---GILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~~---~ILademGlGKTl~ai~li~~l~~ 234 (759)
|...+..+...+..+.. .|+.-+.|+|||..|-.++..+..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33334444444444332 478999999999999999888764
No 247
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=93.84 E-value=0.38 Score=45.11 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=36.8
Q ss_pred EEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCC--CCCEEEEeCCCC
Q 004347 558 CRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLT--AADTCILYDSDW 612 (759)
Q Consensus 558 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~--~a~~VI~~D~~w 612 (759)
..+-| ....+...+++.|.....+ .+|+++....+|||++ .+..||+.-.|+
T Consensus 26 i~~e~-~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 26 LLVQG-EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEeC-CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 33444 3334578899999873222 3678877799999998 478899988775
No 248
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.82 E-value=0.35 Score=48.13 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=68.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGP 290 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~ 290 (759)
.++.-.+|.|||.++.-+++++..+ ..++.+||--.--.-=.++++.|.-.+.+-++......
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~--------------- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTES--------------- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTS---------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcch---------------
Confidence 3677889999999999999888877 45666666543322223444444322222222111000
Q ss_pred CCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhh---HHHHHHhcC-CCCcEEEEecCCCCCCHHHHHhhhh
Q 004347 291 KFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKC---KLLKELKYI-PIGNKLLLTGTPLQNNLAELWSLLH 365 (759)
Q Consensus 291 ~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s---~~~~~l~~l-~~~~rllLTgTPl~n~~~el~sll~ 365 (759)
.+..+..+....+...++++|+||-+.+..+... .+...+... +....+.|++|--+..+..+.....
T Consensus 67 -------~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~ 138 (196)
T PF00448_consen 67 -------DPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYE 138 (196)
T ss_dssp -------CHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHH
T ss_pred -------hhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhh
Confidence 0111122212344555689999999987754332 222222222 3445688888875555544444333
No 249
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.71 E-value=0.47 Score=53.78 Aligned_cols=58 Identities=12% Similarity=-0.013 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHhhcC----CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH
Q 004347 193 YQLKGVKWLISLWQNG----LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL 250 (759)
Q Consensus 193 yQ~~gv~~l~~~~~~~----~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll 250 (759)
....++.++.....+. ...+|.-+.|+|||..+-++...+...++...++.+......
T Consensus 129 ~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 129 SNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred CcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 3444555554433321 235789999999999999988888776544455555443333
No 250
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.6 Score=54.50 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 194 QLKGVKWLISLWQNGL--NG-ILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~--~~-ILademGlGKTl~ai~li~~l~~~ 235 (759)
|...+..|...+.++. +. |+.-..|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5555666655555443 23 888999999999999998888754
No 251
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.58 E-value=0.47 Score=52.08 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHhhc---CCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 191 KSYQLKGVKWLISLWQN---GLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 191 rpyQ~~gv~~l~~~~~~---~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
|..|.+.+...+..+.. +.+.+|.-+.|+|||..+-.++..+..
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67777777555543222 246789999999999999888887754
No 252
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.55 E-value=0.6 Score=53.50 Aligned_cols=131 Identities=21% Similarity=0.159 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhcCCC--e-EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEe
Q 004347 194 QLKGVKWLISLWQNGLN--G-ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYH 270 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~~--~-ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~ 270 (759)
|...+..+......+.- . |+.-+.|+|||..+-.++..+....... ..|-..+.+...-...+.|. ++...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~----~~pC~~C~~C~~~~~~~h~d--v~eld 92 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPS----STPCDTCIQCQSALENRHID--IIEMD 92 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCC----CCCCcccHHHHHHhhcCCCe--EEEec
Confidence 34344444444444432 2 7899999999999999988876432111 12333333333322333322 22222
Q ss_pred CChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hh-hhcCccEEEEcCcccccChh-hHHHHHHhcCCCCcEE
Q 004347 271 GSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YL-RHYNWKYLVVDEGHRLKNPK-CKLLKELKYIPIGNKL 346 (759)
Q Consensus 271 g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l-~~~~~~~lIvDEaH~ikn~~-s~~~~~l~~l~~~~rl 346 (759)
+... + ..+.++..... +. ...++.++||||||++.... ..+.+.+...+...++
T Consensus 93 aas~-~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 93 AASN-R---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred cccc-c---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 2110 0 11222221111 01 11357899999999996422 3455555555566667
Q ss_pred EEecCC
Q 004347 347 LLTGTP 352 (759)
Q Consensus 347 lLTgTP 352 (759)
+|++|-
T Consensus 151 IL~ttd 156 (535)
T PRK08451 151 ILATTD 156 (535)
T ss_pred EEEECC
Confidence 776653
No 253
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.55 E-value=0.19 Score=53.38 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhhcCCC-eEEEcCCCCcHHHHHHHHH-HHHHhCCCCCCeEEEECCccH
Q 004347 193 YQLKGVKWLISLWQNGLN-GILADQMGLGKTIQTIAFL-AHLKGNGLHGPYLVIAPLSTL 250 (759)
Q Consensus 193 yQ~~gv~~l~~~~~~~~~-~ILademGlGKTl~ai~li-~~l~~~~~~~~~LIV~P~sll 250 (759)
+|.-++..++. .... +.|.-.-|+|||+-|+|.. ....+++...+++|-=|..-+
T Consensus 232 eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 232 EQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred HHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 77777777763 2222 4677789999999877543 334455566677776665443
No 254
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.52 E-value=0.68 Score=52.55 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~ 234 (759)
.|+.-+.|+|||..|-+++..+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 489999999999999888887754
No 255
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.51 E-value=1.1 Score=50.77 Aligned_cols=135 Identities=25% Similarity=0.273 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhhcC---CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEe
Q 004347 194 QLKGVKWLISLWQNG---LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYH 270 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~---~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~ 270 (759)
|...+..+...+..+ ...|+.-..|+|||..|..++..+.... +|. .-|-..+.+...-.....|+ ++.+.
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~--~~~--~~pCg~C~~C~~i~~~~~~D--v~eid 91 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSN--GPT--SDPCGTCHNCISIKNSNHPD--VIEID 91 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC--CCC--CCCccccHHHHHHhccCCCC--EEEEe
Confidence 333444444444443 2468999999999999988887776532 221 12444445544333333333 33333
Q ss_pred CCh-hHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhh-hhcCccEEEEcCcccccCh-hhHHHHHHhcCCCCcEEE
Q 004347 271 GSK-KERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYL-RHYNWKYLVVDEGHRLKNP-KCKLLKELKYIPIGNKLL 347 (759)
Q Consensus 271 g~~-~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l-~~~~~~~lIvDEaH~ikn~-~s~~~~~l~~l~~~~rll 347 (759)
+.. ...+.++. +.... .+. ....++++||||+|.+... ...+.+.+...+..-+++
T Consensus 92 aas~~~vddIR~--------------------Iie~~-~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 92 AASNTSVDDIKV--------------------ILENS-CYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred cccCCCHHHHHH--------------------HHHHH-HhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 321 11111110 11111 111 1235789999999999642 233444455545555666
Q ss_pred EecCCCCC
Q 004347 348 LTGTPLQN 355 (759)
Q Consensus 348 LTgTPl~n 355 (759)
|+.|-...
T Consensus 151 latte~~K 158 (491)
T PRK14964 151 LATTEVKK 158 (491)
T ss_pred EEeCChHH
Confidence 66664433
No 256
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.46 E-value=0.84 Score=49.22 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=35.9
Q ss_pred CccchhHHHHHHHHHHHh----hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC
Q 004347 188 GKLKSYQLKGVKWLISLW----QNGLNGILADQMGLGKTIQTIAFLAHLKGNG 236 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~----~~~~~~ILademGlGKTl~ai~li~~l~~~~ 236 (759)
+..+.++..++.++.... ..+.+.+|.-++|+|||..+.+++..+...|
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 356666666666544322 2456778999999999999999999988764
No 257
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.37 E-value=0.65 Score=49.85 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=27.3
Q ss_pred CccEEEEcCcccccCh--hhHHHHHHhcCCCCcEEEEecCCCC
Q 004347 314 NWKYLVVDEGHRLKNP--KCKLLKELKYIPIGNKLLLTGTPLQ 354 (759)
Q Consensus 314 ~~~~lIvDEaH~ikn~--~s~~~~~l~~l~~~~rllLTgTPl~ 354 (759)
..++|||||+|++... ...+...+.......++++|++...
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 4589999999998332 2234444555666778888887543
No 258
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.23 E-value=0.59 Score=54.89 Aligned_cols=43 Identities=16% Similarity=-0.009 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhhcCC---CeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 193 YQLKGVKWLISLWQNGL---NGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 193 yQ~~gv~~l~~~~~~~~---~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
.|...+..|...+..++ ..|+.-+.|+|||..|.+++..+...
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 34555555555555553 34889999999999999999988753
No 259
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.22 E-value=0.6 Score=48.06 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHhh---cC-CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHH
Q 004347 192 SYQLKGVKWLISLWQ---NG-LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 259 (759)
Q Consensus 192 pyQ~~gv~~l~~~~~---~~-~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~ 259 (759)
+.|..++..+..... .+ .+.+|.-.+|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEE----EHHHHHHHHHH
Confidence 446556655554322 22 3568999999999999999999988764 355555 35667666653
No 260
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.13 E-value=0.4 Score=44.98 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=35.8
Q ss_pred EEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc--ccCCCCCC--CCCEEEEeCCCC
Q 004347 558 CRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA--GGLGINLT--AADTCILYDSDW 612 (759)
Q Consensus 558 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a--gg~GINL~--~a~~VI~~D~~w 612 (759)
+.+.+... .+..+++++|+........+|+++.. .++|||++ .+..||+...|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34445433 24578999998632211235666665 79999998 478899988775
No 261
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.12 E-value=0.62 Score=47.20 Aligned_cols=29 Identities=21% Similarity=-0.004 Sum_probs=23.2
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
.+.+.+|.-+.|+|||..+.++.......
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~ 65 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER 65 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34567899999999999998888776654
No 262
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.03 E-value=0.84 Score=51.49 Aligned_cols=37 Identities=19% Similarity=0.080 Sum_probs=28.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
..+|.-+.|+|||..+-++...+...++...++.+..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 3689999999999999888888877655556666654
No 263
>PRK08116 hypothetical protein; Validated
Probab=92.98 E-value=0.7 Score=48.42 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=29.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
+.+.+|.-++|+|||..+.+++..+...+ .+++++.-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~--~~v~~~~~ 150 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG--VPVIFVNF 150 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEH
Confidence 34578999999999999999999998763 45555543
No 264
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.95 E-value=1.2 Score=51.38 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCcHHHHHHHHHHHHHh
Q 004347 194 QLKGVKWLISLWQNGL--NG-ILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~--~~-ILademGlGKTl~ai~li~~l~~ 234 (759)
|...+..+...+..+. +. |+.-+.|+|||..|-.++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4444444444333332 33 79999999999999988888764
No 265
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.89 E-value=0.88 Score=50.83 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=27.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
.+|.-..|+|||..+-++...+........++.+.
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 47899999999999999888887764445566554
No 266
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.81 E-value=1.3 Score=49.34 Aligned_cols=133 Identities=16% Similarity=0.134 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCcHHHHHHHHHHHHHhCCCC-CC---eEEEECCccHHHHHHHHHHhCCCceE
Q 004347 194 QLKGVKWLISLWQNGL--N-GILADQMGLGKTIQTIAFLAHLKGNGLH-GP---YLVIAPLSTLSNWVNEISRFVPSVSA 266 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~--~-~ILademGlGKTl~ai~li~~l~~~~~~-~~---~LIV~P~sll~~W~~E~~~~~p~~~~ 266 (759)
|...+..+...+.++. + -|+.-+.|+|||..|.+++..+...... .+ .-...|-..+..+..-..-- +.++
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~--~~n~ 98 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT--SLNI 98 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC--CCCe
Confidence 4444555555555542 2 5788999999999999998888653211 00 00122444444433222211 2233
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhh----hhcCccEEEEcCcccccCh-hhHHHHHHhcCC
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYL----RHYNWKYLVVDEGHRLKNP-KCKLLKELKYIP 341 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l----~~~~~~~lIvDEaH~ikn~-~s~~~~~l~~l~ 341 (759)
..+.|.... ..+.+..-. ..+ ....+.++||||+|++... ...+.+.+...+
T Consensus 99 ~~~~~~~~~----------------------~id~Ir~l~-~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~ 155 (397)
T PRK14955 99 SEFDAASNN----------------------SVDDIRLLR-ENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP 155 (397)
T ss_pred EeecccccC----------------------CHHHHHHHH-HHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC
Confidence 333332110 112222211 111 1235689999999999642 233444555555
Q ss_pred CCcEEEEecC
Q 004347 342 IGNKLLLTGT 351 (759)
Q Consensus 342 ~~~rllLTgT 351 (759)
...++++++|
T Consensus 156 ~~t~~Il~t~ 165 (397)
T PRK14955 156 PHAIFIFATT 165 (397)
T ss_pred CCeEEEEEeC
Confidence 5556666655
No 267
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.77 E-value=1.5 Score=46.91 Aligned_cols=40 Identities=28% Similarity=0.257 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcC--CCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 195 LKGVKWLISLWQNG--LNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 195 ~~gv~~l~~~~~~~--~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
...+..+......+ .+.+|.-+.|+|||..+-+++..+..
T Consensus 23 ~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 23 EEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34444444443333 34799999999999998888877654
No 268
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.75 E-value=1.1 Score=52.01 Aligned_cols=42 Identities=24% Similarity=0.148 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 194 QLKGVKWLISLWQNGL---NGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~---~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
|...+..+...+.++. ..|+.-+.|+|||..|..++..+...
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3334445544444432 24789999999999999999888654
No 269
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.68 E-value=1.2 Score=45.66 Aligned_cols=41 Identities=17% Similarity=-0.022 Sum_probs=27.1
Q ss_pred HHHHHHHHHHh--hcCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 195 LKGVKWLISLW--QNGLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 195 ~~gv~~l~~~~--~~~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
..++.++.... ..+.+.+|.-+.|+|||..+.+++..+...
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 33444444332 223456899999999998888777766654
No 270
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.62 E-value=1.1 Score=52.16 Aligned_cols=37 Identities=22% Similarity=0.165 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCC---CeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 198 VKWLISLWQNGL---NGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 198 v~~l~~~~~~~~---~~ILademGlGKTl~ai~li~~l~~ 234 (759)
+..+...+.+++ ..|+.-+.|+|||..|..++..+..
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 444444444432 3467899999999999999888764
No 271
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.57 E-value=0.98 Score=48.93 Aligned_cols=167 Identities=18% Similarity=0.106 Sum_probs=82.1
Q ss_pred cchhHHHHHHHHHHHhhcCCCe-EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEE
Q 004347 190 LKSYQLKGVKWLISLWQNGLNG-ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAII 268 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~-ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~ 268 (759)
++|+|...-+.+..+..+-..+ ++.-+.|+|||..|..++..+...+..+.. .|-..+..-..-...-+|++..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~---~~Cg~C~~C~~~~~~~HPD~~~i~ 78 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDG---EPCGTCAACNWFAQGNHPDYRIVR 78 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCCCHHHHHHHcCCCCCEEEEe
Confidence 4688877777777653222234 678889999999999999988764321100 122222222111222345544332
Q ss_pred EeCCh-------hHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh----hcCccEEEEcCcccccC-hhhHHHHH
Q 004347 269 YHGSK-------KERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR----HYNWKYLVVDEGHRLKN-PKCKLLKE 336 (759)
Q Consensus 269 ~~g~~-------~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~----~~~~~~lIvDEaH~ikn-~~s~~~~~ 336 (759)
-.+.. .......... .........-.++-+.++.-. ..+. .-+++++|||+||++.. ....+.+.
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~--~~~k~~~~~~~I~idqiR~l~-~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKt 155 (342)
T PRK06964 79 PEALAAEAPGAADEAKEADADE--GGKKTKAPSKEIKIEQVRALL-DFCGVGTHRGGARVVVLYPAEALNVAAANALLKT 155 (342)
T ss_pred cccccccccccccccccchhhc--ccccccccccccCHHHHHHHH-HHhccCCccCCceEEEEechhhcCHHHHHHHHHH
Confidence 11110 0000000000 000000000112334433222 2221 34689999999999963 33456666
Q ss_pred HhcCCCCcEEEEecCCCCCCHHHHHh
Q 004347 337 LKYIPIGNKLLLTGTPLQNNLAELWS 362 (759)
Q Consensus 337 l~~l~~~~rllLTgTPl~n~~~el~s 362 (759)
|..-+....++|+++-...-+.-+.|
T Consensus 156 LEEPp~~t~fiL~t~~~~~LLpTI~S 181 (342)
T PRK06964 156 LEEPPPGTVFLLVSARIDRLLPTILS 181 (342)
T ss_pred hcCCCcCcEEEEEECChhhCcHHHHh
Confidence 66656666677766644444444444
No 272
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.52 E-value=0.35 Score=47.36 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=38.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
.+++-++|+|||..++.++......| .++++++......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g--~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG--EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCHHHHHHHHHHc
Confidence 47888999999999999988877553 6899999877777777766655
No 273
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.48 E-value=0.28 Score=55.77 Aligned_cols=121 Identities=20% Similarity=0.201 Sum_probs=70.6
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHH-----HHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCC
Q 004347 216 QMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLS-----NWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGP 290 (759)
Q Consensus 216 emGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~-----~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~ 290 (759)
+=--|||.-.+++|+.++..-..-.+..++-..-+. .-...+.+|+|.-.++...+..-. +.. .+.
T Consensus 210 PRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~--------~s~-pg~ 280 (668)
T PHA03372 210 PRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVIS--------IDH-RGA 280 (668)
T ss_pred cccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEE--------Eec-CCC
Confidence 456799999999999888754445677777743332 234456889987654322211100 000 011
Q ss_pred CCCEEEec-HHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecC
Q 004347 291 KFPIVVTS-YEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGT 351 (759)
Q Consensus 291 ~~~vvItt-ye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgT 351 (759)
+.-++..| ++ .+.++...|++++|||||-++-..-...--+..-.....|.+|-|
T Consensus 281 Kst~~fasc~n------~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 281 KSTALFASCYN------TNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred cceeeehhhcc------CccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCC
Confidence 21222222 33 245677789999999999998644433333444456666777655
No 274
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.40 E-value=1.3 Score=51.81 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhhcCCCe---EEEcCCCCcHHHHHHHHHHHHHh
Q 004347 193 YQLKGVKWLISLWQNGLNG---ILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 193 yQ~~gv~~l~~~~~~~~~~---ILademGlGKTl~ai~li~~l~~ 234 (759)
.|...+..+...+.++.-+ |+.-+.|+|||..+..++..+..
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3556666666655555432 88999999999999999888764
No 275
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.37 E-value=0.83 Score=55.02 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=45.6
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN 252 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~ 252 (759)
+..|.+-|..++..++. .+.-.+|....|+|||...-+++..+...| .++++++|+.....
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~~g--~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEAAG--YRVIGAALSGKAAE 410 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHhCC--CeEEEEeCcHHHHH
Confidence 45789999999988763 233568888999999988777766655543 57889999875543
No 276
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.23 E-value=1 Score=53.77 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=66.1
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHH----HHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILD----IMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFL 587 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld----~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 587 (759)
.|||-.+..-.+-.....|.+++|.++....+. .+..++...|+++..++|+++..+|.+++....+++ +.| +
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~--~~I-v 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE--ADI-V 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC--CCE-E
Confidence 477876544433334457889999999877554 445555566899999999999999999999998744 444 5
Q ss_pred Eecc-cccCCCCCCCCCEEEE
Q 004347 588 LSTR-AGGLGINLTAADTCIL 607 (759)
Q Consensus 588 lsT~-agg~GINL~~a~~VI~ 607 (759)
++|. .....+.+.....||+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred EchHHHhcccchhcccceEEE
Confidence 5554 4455677777777776
No 277
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.22 E-value=2.2 Score=48.65 Aligned_cols=42 Identities=24% Similarity=0.090 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHhhcCC--Ce-EEEcCCCCcHHHHHHHHHHHHHh
Q 004347 193 YQLKGVKWLISLWQNGL--NG-ILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 193 yQ~~gv~~l~~~~~~~~--~~-ILademGlGKTl~ai~li~~l~~ 234 (759)
-|...+..+.....++. ++ |+.-+.|+|||..|-.++..+..
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34455555555554443 33 68999999999998888877754
No 278
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.19 E-value=0.7 Score=45.41 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=78.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHH---HHHHHHhCCCceEEEEeCChhHHHHHHHhcC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW---VNEISRFVPSVSAIIYHGSKKERDEIRRKHM 284 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W---~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~ 284 (759)
..+.++.-..|-|||-.|++++......| .+++||== +-..| ...+.+.+|.+....+..+-...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G--~~V~ivQF--lKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~-------- 89 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHG--KKVGVVQF--IKGAWSTGERNLLEFGGGVEFHVMGTGFTWE-------- 89 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCC--CeEEEEEE--ecCCCccCHHHHHhcCCCcEEEECCCCCccc--------
Confidence 45678888899999999999887777665 46665532 11122 12222223443333322210000
Q ss_pred CCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC----hhhHHHHHHhcCCCCcEEEEecCCCCCCHHHH
Q 004347 285 PRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN----PKCKLLKELKYIPIGNKLLLTGTPLQNNLAEL 360 (759)
Q Consensus 285 ~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn----~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el 360 (759)
. ....--+..........+..+..-.|++||+||.=..-+ +...+...+..-+..--+.|||--.+..+.++
T Consensus 90 -~---~~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ 165 (191)
T PRK05986 90 -T---QDRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEA 165 (191)
T ss_pred -C---CCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 0 000000011112222334556677899999999877654 34556667766666678999998555544444
Q ss_pred Hhhhhh
Q 004347 361 WSLLHF 366 (759)
Q Consensus 361 ~sll~f 366 (759)
..++.-
T Consensus 166 ADlVTE 171 (191)
T PRK05986 166 ADLVTE 171 (191)
T ss_pred Cchhee
Confidence 444433
No 279
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.15 E-value=1.3 Score=51.60 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~ 234 (759)
-|+.-+.|+|||..+-.++..+..
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 377999999999999888887764
No 280
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.98 E-value=1.7 Score=44.30 Aligned_cols=110 Identities=23% Similarity=0.283 Sum_probs=60.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH------HHHHHHHHHhCCCceEEEEeCChhHHHHHHHhc
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL------SNWVNEISRFVPSVSAIIYHGSKKERDEIRRKH 283 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll------~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~ 283 (759)
-+.+.-++|+|||+.+=+++..+.+. ....|+.|+.++ .-|..++.. -|.
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~v~i~~~~~s~~~~~~ai~~~l~~-~p~-------------------- 108 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNED---QVAVVVIDKPTLSDATLLEAIVADLES-QPK-------------------- 108 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCC---ceEEEEecCcchhHHHHHHHHHHHhcc-Ccc--------------------
Confidence 45678899999999877555555432 344467777665 336555543 111
Q ss_pred CCCCCCCCCCEEEecHHHHHHHHHHhhhhcC-ccEEEEcCcccccChhhHHHHHHhcC----CCCcEEEEecCC
Q 004347 284 MPRAIGPKFPIVVTSYEVALSDARKYLRHYN-WKYLVVDEGHRLKNPKCKLLKELKYI----PIGNKLLLTGTP 352 (759)
Q Consensus 284 ~~~~~~~~~~vvIttye~l~~~~~~~l~~~~-~~~lIvDEaH~ikn~~s~~~~~l~~l----~~~~rllLTgTP 352 (759)
+.+- +.-+..-+.+...+...+ .-+++|||||.+..+.-...+.+..+ ...-+++|-|-|
T Consensus 109 --------~~~~-~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp 173 (269)
T COG3267 109 --------VNVN-AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP 173 (269)
T ss_pred --------chhH-HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc
Confidence 0000 011112222223333333 47999999999876554444444444 233457888877
No 281
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.97 E-value=0.9 Score=48.77 Aligned_cols=119 Identities=19% Similarity=0.165 Sum_probs=63.6
Q ss_pred CCC-eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCC
Q 004347 208 GLN-GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPR 286 (759)
Q Consensus 208 ~~~-~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~ 286 (759)
... -+++.+.|+|||..|.+++..+...+..+..--.+. ......-..+.|++. .+..+..
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~d~l--el~~s~~------------ 84 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC----RSCKLIPAGNHPDFL--ELNPSDL------------ 84 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch----hhhhHHhhcCCCceE--Eeccccc------------
Confidence 344 688899999999999999999886433221111111 222222233333322 2221111
Q ss_pred CCCCCCCEEEecHHHHHHHHHHhhh----hcCccEEEEcCcccccC-hhhHHHHHHhcCCCCcEEEEecC
Q 004347 287 AIGPKFPIVVTSYEVALSDARKYLR----HYNWKYLVVDEGHRLKN-PKCKLLKELKYIPIGNKLLLTGT 351 (759)
Q Consensus 287 ~~~~~~~vvIttye~l~~~~~~~l~----~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~~~rllLTgT 351 (759)
...+ ...+.+..-. ..+. ..+|.++|||||+.+.. ....+.+.+...+...+++|+..
T Consensus 85 ---~~~~---i~~~~vr~~~-~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 85 ---RKID---IIVEQVRELA-EFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred ---CCCc---chHHHHHHHH-HHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 0111 1122222211 2111 25789999999999964 33445555556677777777764
No 282
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.84 E-value=1.2 Score=51.03 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=72.8
Q ss_pred hhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc-CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe
Q 004347 511 EQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK-GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS 589 (759)
Q Consensus 511 ~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls 589 (759)
..|||-.+...++......|.++||.+..+.....+.+.|... |..+..+||+++..+|.+...+...++ .. |++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~--~~-IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE--IL-VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC--CC-EEEC
Confidence 4689999998888888888999999999998887777777654 778999999999999988887776533 33 4666
Q ss_pred cccccCCCCCCCCCEEEEeC
Q 004347 590 TRAGGLGINLTAADTCILYD 609 (759)
Q Consensus 590 T~agg~GINL~~a~~VI~~D 609 (759)
|+.+- =+-+.....||+=+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 76532 23456777777644
No 283
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.80 E-value=0.21 Score=58.00 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=98.2
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-HHHHHHH-HHHh---C
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNE-ISRF---V 261 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E-~~~~---~ 261 (759)
.....|||.+-+..+-. ..-....+.-..-+|||..++.++.+.....+ +|+|++.|+.- ...|..+ |... .
T Consensus 14 ~~~~~Py~~eimd~~~~--~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P-~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSD--PSVREVVVMKSAQVGKTELLLNWIGYSIDQDP-GPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCCChhHHHHHHhcCC--cCccEEEEEEcchhhHhHHHHhhceEEEEeCC-CCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 44788999988777653 11234567777899999988888887777644 89999999764 4556543 3222 2
Q ss_pred CCceEEEEe-CChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCccccc----C---hhhHH
Q 004347 262 PSVSAIIYH-GSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK----N---PKCKL 333 (759)
Q Consensus 262 p~~~~~~~~-g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ik----n---~~s~~ 333 (759)
|.+.-.+.. ......+.+..+.+ ....+.++.... ..-|.....++|++||...+- . +-...
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f-----~gg~l~~~ga~S-----~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la 160 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRF-----PGGFLYLVGANS-----PSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELA 160 (557)
T ss_pred HHHHHHhCchhhcccCCchhheec-----CCCEEEEEeCCC-----CcccccCCcCEEEEechhhccccCccCCCHHHHH
Confidence 333222211 01111111111111 223344544432 245677788999999999983 2 23333
Q ss_pred HHHHhcCCCCcEEEEecCCCCCCHHHHHhhh
Q 004347 334 LKELKYIPIGNKLLLTGTPLQNNLAELWSLL 364 (759)
Q Consensus 334 ~~~l~~l~~~~rllLTgTPl~n~~~el~sll 364 (759)
......+....++++..||.......++.+.
T Consensus 161 ~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 161 EKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred HHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 3444455677889999999877555555544
No 284
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.53 E-value=0.99 Score=51.03 Aligned_cols=43 Identities=14% Similarity=-0.064 Sum_probs=30.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHH
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 253 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W 253 (759)
.+|.-++|+|||..+-++..++.......+++.+.+...+...
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~ 186 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKA 186 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 5789999999999888888877765455566666654433333
No 285
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.50 E-value=0.52 Score=54.41 Aligned_cols=127 Identities=15% Similarity=0.128 Sum_probs=69.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHH----HHHhCCCceEEEEeCChhHHHHHHHhcCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNE----ISRFVPSVSAIIYHGSKKERDEIRRKHMP 285 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E----~~~~~p~~~~~~~~g~~~~r~~~~~~~~~ 285 (759)
.++.-+=--|||..+.+++..+...-..-.+++++|.. +...-.++ +++|+|...+-...|.. + ...+.
T Consensus 257 tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-----I-~i~f~ 330 (738)
T PHA03368 257 TVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-----I-SFSFP 330 (738)
T ss_pred eEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-----E-EEEec
Confidence 35555667899998877777666544456899999943 44444444 45576553332223311 0 00000
Q ss_pred CCCCCCCCEEEe-cHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecC
Q 004347 286 RAIGPKFPIVVT-SYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGT 351 (759)
Q Consensus 286 ~~~~~~~~vvIt-tye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgT 351 (759)
.+.+..+... ++. .+.++...++++||||||.|+...-....-...-.....|.+|-|
T Consensus 331 --nG~kstI~FaSarn------tNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 331 --DGSRSTIVFASSHN------TNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred --CCCccEEEEEeccC------CCCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecC
Confidence 0111233333 221 245677789999999999998532221112222235566777755
No 286
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=91.47 E-value=0.35 Score=51.54 Aligned_cols=55 Identities=20% Similarity=0.108 Sum_probs=41.4
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC--CCCCeEEEECCccH
Q 004347 190 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG--LHGPYLVIAPLSTL 250 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~--~~~~~LIV~P~sll 250 (759)
|.+-|..+|.+ . ....++-...|+|||.+.+.-+.++...+ ....+|+|+++...
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 45779988887 3 55667777799999999999888888765 34569999997754
No 287
>PRK06921 hypothetical protein; Provisional
Probab=91.43 E-value=1.2 Score=46.64 Aligned_cols=38 Identities=26% Similarity=0.111 Sum_probs=28.2
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
.+.+.+|.-++|+|||..+.+++..+.... ...++.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEE
Confidence 356678999999999999999998887651 13444444
No 288
>PRK09165 replicative DNA helicase; Provisional
Probab=91.28 E-value=0.98 Score=51.73 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=71.0
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC-------------CCCCeEEEECCccHHHHHHHHHHhCCCc
Q 004347 198 VKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-------------LHGPYLVIAPLSTLSNWVNEISRFVPSV 264 (759)
Q Consensus 198 v~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~-------------~~~~~LIV~P~sll~~W~~E~~~~~p~~ 264 (759)
+.-++.-+..|.-.|||..+|.|||.-++.++....... ...++++++.-....++...+......+
T Consensus 207 LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v 286 (497)
T PRK09165 207 LDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEI 286 (497)
T ss_pred HhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCC
Confidence 444443344444569999999999999988877664321 2458899988777777666654432222
Q ss_pred eEE-EEeCCh--hHHHHHHHhcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 265 SAI-IYHGSK--KERDEIRRKHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 265 ~~~-~~~g~~--~~r~~~~~~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
... +..|.- .+...+.... ... ...++.| .|.+.+...++.+....+.++||||=.|.+.
T Consensus 287 ~~~~i~~~~l~~~e~~~l~~a~--~~l-~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 287 SSSKIRRGKISEEDFEKLVDAS--QEL-QKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CHHHHhcCCCCHHHHHHHHHHH--HHH-hcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcc
Confidence 111 112211 1111111110 000 1223443 2455666665555556678999999988775
No 289
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.24 E-value=1.4 Score=48.81 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHHh-h--cCCCeEEEcCCCCcHHHHHHHHHHHHHhCC
Q 004347 191 KSYQLKGVKWLISLW-Q--NGLNGILADQMGLGKTIQTIAFLAHLKGNG 236 (759)
Q Consensus 191 rpyQ~~gv~~l~~~~-~--~~~~~ILademGlGKTl~ai~li~~l~~~~ 236 (759)
|.-|..-+.-.+... . .+.+.+|.-..|+|||..+-.++..+...+
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 445555454443222 1 235679999999999999998888887654
No 290
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.22 E-value=1.5 Score=50.90 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=57.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGP 290 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~ 290 (759)
.+|.-..|+|||..+.+++.++........++.+.-..++..+...+..-
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~------------------------------ 366 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDG------------------------------ 366 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhc------------------------------
Confidence 67889999999999888888876643334555555433333333222110
Q ss_pred CCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChh---hHHHHHHhcCCC-CcEEEEecC
Q 004347 291 KFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPK---CKLLKELKYIPI-GNKLLLTGT 351 (759)
Q Consensus 291 ~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~---s~~~~~l~~l~~-~~rllLTgT 351 (759)
.++.+ ...+. ..++||||+.|.+.+.. ..++..+..+.. ...|++|+.
T Consensus 367 -------~~~~f----~~~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 367 -------KGDSF----RRRYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred -------cHHHH----HHHhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 01112 12233 35899999999997643 234455544432 345777765
No 291
>PRK08727 hypothetical protein; Validated
Probab=91.14 E-value=0.8 Score=46.91 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNG 236 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~ 236 (759)
.+|.-+.|+|||..+.+++..+...+
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 68999999999998888888777653
No 292
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.10 E-value=1.2 Score=48.78 Aligned_cols=124 Identities=18% Similarity=0.097 Sum_probs=64.6
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCC--CceEEEEeCChhHHHHHHHhcC
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVP--SVSAIIYHGSKKERDEIRRKHM 284 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p--~~~~~~~~g~~~~r~~~~~~~~ 284 (759)
++...+|.-.+|.|||.++..++..+.......++.+|+....-..=...+..|.. ++.+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----------------- 198 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH----------------- 198 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-----------------
Confidence 35566899999999999999888876543222356666543321111223333321 11111
Q ss_pred CCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC-----CCCcEEEEecCCCCCCHHH
Q 004347 285 PRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI-----PIGNKLLLTGTPLQNNLAE 359 (759)
Q Consensus 285 ~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l-----~~~~rllLTgTPl~n~~~e 359 (759)
.+.+...+...+ ..+ .+.++|+||.+=+.-... .+...+..+ .....++|+||--...+.+
T Consensus 199 ----------~~~~~~~l~~~l-~~l--~~~DlVLIDTaG~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 199 ----------AVKDGGDLQLAL-AEL--RNKHMVLIDTIGMSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred ----------ecCCcccHHHHH-HHh--cCCCEEEEcCCCCCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 111111122221 112 245899999997653222 233333333 2334688899986666665
Q ss_pred HH
Q 004347 360 LW 361 (759)
Q Consensus 360 l~ 361 (759)
.+
T Consensus 265 vi 266 (374)
T PRK14722 265 VV 266 (374)
T ss_pred HH
Confidence 53
No 293
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.10 E-value=1.1 Score=54.71 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHh--hcCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 194 QLKGVKWLISLW--QNGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 194 Q~~gv~~l~~~~--~~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
|..-+.+++... ....|.||.-+.|+|||..+=+++..+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 444466776533 23457799999999999888777776654
No 294
>PRK08760 replicative DNA helicase; Provisional
Probab=91.10 E-value=1.1 Score=50.98 Aligned_cols=126 Identities=16% Similarity=0.093 Sum_probs=72.6
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCCh--h
Q 004347 198 VKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGSK--K 274 (759)
Q Consensus 198 v~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~~--~ 274 (759)
+.-+..-+.+|.=.|||..+|.|||.-++.++...... ...++++++.-....+|...+......+... +..|.. .
T Consensus 219 LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~ 297 (476)
T PRK08760 219 FDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDE 297 (476)
T ss_pred HHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCCHH
Confidence 44454444555556999999999999999888776532 1258999999888888887765543222211 112221 1
Q ss_pred HHHHHHHhcCCCCCCCCCCEEEe-----cHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 275 ERDEIRRKHMPRAIGPKFPIVVT-----SYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 275 ~r~~~~~~~~~~~~~~~~~vvIt-----tye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
+...+.... ... ...++.|. |.+.+...++.+....+.++||||=.|.+.
T Consensus 298 e~~~~~~a~--~~l-~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 298 DWARVTGAI--KML-KETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHH--HHH-hcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcC
Confidence 111110000 000 12234432 455566555555555678999999888775
No 295
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.03 E-value=2.8 Score=41.15 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~ 235 (759)
-|+.-+.|.|||..+..++..+...
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5789999999999999998888753
No 296
>PRK06893 DNA replication initiation factor; Validated
Probab=91.00 E-value=1.9 Score=44.05 Aligned_cols=26 Identities=19% Similarity=-0.051 Sum_probs=21.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNG 236 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~ 236 (759)
.+|.-+.|+|||..+.+++..+...+
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999888888877654
No 297
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.67 E-value=2.2 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~ 234 (759)
-|+.-+.|+|||..+-+++..+..
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcc
Confidence 489999999999999999888765
No 298
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.55 E-value=2 Score=50.23 Aligned_cols=132 Identities=22% Similarity=0.246 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCcHHHHHHHHHHHHHhC-CCCCCeEEEECCccHHHHHHHHHHhCCCceEEEE
Q 004347 194 QLKGVKWLISLWQNGL--NG-ILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIY 269 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~--~~-ILademGlGKTl~ai~li~~l~~~-~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~ 269 (759)
|...+..+......+. +. |+.-+-|+|||..+..++..+... +..+. |-..+... .++... ....++.+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~-----~c~~c~~c-~~i~~g-~~~d~~ei 93 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAE-----PCNVCPPC-VEITEG-RSVDVFEI 93 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCC-----CCCccHHH-HHHhcC-CCCCeeee
Confidence 3344444444434432 33 788899999999999998887643 21111 22222222 223222 12334444
Q ss_pred eCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC-hhhHHHHHHhcCCCCcEEEE
Q 004347 270 HGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN-PKCKLLKELKYIPIGNKLLL 348 (759)
Q Consensus 270 ~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~~~rllL 348 (759)
.|.... -|-....+.......-...+++++||||+|++.. ....+.+.|...+...+++|
T Consensus 94 d~~s~~-------------------~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl 154 (576)
T PRK14965 94 DGASNT-------------------GVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF 154 (576)
T ss_pred eccCcc-------------------CHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 332210 0000011111111001123578999999999863 23345555555555556665
Q ss_pred ecC
Q 004347 349 TGT 351 (759)
Q Consensus 349 TgT 351 (759)
+.|
T Consensus 155 ~t~ 157 (576)
T PRK14965 155 ATT 157 (576)
T ss_pred EeC
Confidence 555
No 299
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.55 E-value=2.8 Score=42.86 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=36.9
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 259 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~ 259 (759)
..+.-.++.-+.|+|||..++.++..+...| .+++.++......+-.+.+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCCCHHHHHHHHHH
Confidence 3355568999999999999998888876654 577888875555444444443
No 300
>PRK05580 primosome assembly protein PriA; Validated
Probab=90.51 E-value=2.2 Score=50.89 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=73.1
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc-CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEec
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK-GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLST 590 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT 590 (759)
.|||......++......|.++||.+..+.....+...|... |..+..++|+++..+|.+...+...++.. ++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEec
Confidence 478999888888877788999999999999888777777654 78899999999999998888887764333 46777
Q ss_pred ccccCCCCCCCCCEEEEeCC
Q 004347 591 RAGGLGINLTAADTCILYDS 610 (759)
Q Consensus 591 ~agg~GINL~~a~~VI~~D~ 610 (759)
+..- =+.+.....||+=+.
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 6432 245667777776543
No 301
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.44 E-value=0.25 Score=48.10 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=26.6
Q ss_pred CCCCEEEecHHHHHHHH-HHhh--hhcCccEEEEcCcccccC
Q 004347 290 PKFPIVVTSYEVALSDA-RKYL--RHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 290 ~~~~vvIttye~l~~~~-~~~l--~~~~~~~lIvDEaH~ikn 328 (759)
...+|||++|..+.... +..+ ....-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 46689999999988653 2222 223447899999999854
No 302
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=90.40 E-value=2.6 Score=39.62 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=27.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST 249 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl 249 (759)
+|.-+.|+|||..+..++..+... .++++++.....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~ 38 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEE 38 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcc
Confidence 567789999999999888877663 467777766443
No 303
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.33 E-value=2.1 Score=50.79 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 194 QLKGVKWLISLWQNGL--N-GILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~--~-~ILademGlGKTl~ai~li~~l~~~ 235 (759)
|...+..+......+. + .|+.-+.|.|||..|-.++..+...
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3333444444333332 3 3789999999999999988877653
No 304
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.28 E-value=1.5 Score=42.46 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=39.4
Q ss_pred HHhhhhcCccEEEEcCcccccC----hhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhh
Q 004347 307 RKYLRHYNWKYLVVDEGHRLKN----PKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLL 364 (759)
Q Consensus 307 ~~~l~~~~~~~lIvDEaH~ikn----~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll 364 (759)
+..+..-.||+||+||.-..-+ +...+...+..-+..--+.|||.-.+..+.++..++
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~V 151 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLV 151 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCcee
Confidence 4556667899999999986543 234566677666666789999986555444444444
No 305
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.26 E-value=1 Score=51.28 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=22.9
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
...+.+|.-++|+|||..+-+++..+..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 3567889999999999998888877654
No 306
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.25 E-value=3.4 Score=41.84 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=54.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGP 290 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~ 290 (759)
.+|.-+.|+|||.-.-+++..+....+..+++.+... .+.+++......
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~----~f~~~~~~~~~~--------------------------- 85 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE----EFIREFADALRD--------------------------- 85 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH----HHHHHHHHHHHT---------------------------
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH----HHHHHHHHHHHc---------------------------
Confidence 5889999999998777777766654444455544432 222222222100
Q ss_pred CCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChh---hHHHHHHhcC-CCCcEEEEec
Q 004347 291 KFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPK---CKLLKELKYI-PIGNKLLLTG 350 (759)
Q Consensus 291 ~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~---s~~~~~l~~l-~~~~rllLTg 350 (759)
...+.+. ..+. ..++||||..|.+.+.. ..++..+..+ ....++++|+
T Consensus 86 ------~~~~~~~----~~~~--~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 86 ------GEIEEFK----DRLR--SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp ------TSHHHHH----HHHC--TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ------ccchhhh----hhhh--cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 0011121 2223 56999999999998754 2344444444 3455777777
No 307
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.24 E-value=3.7 Score=46.78 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
+....|.-.+|.|||..+..++..+...+..+++.+|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 44456777899999999888887776654345566554
No 308
>PRK06904 replicative DNA helicase; Validated
Probab=90.07 E-value=2.6 Score=47.88 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeC-C-
Q 004347 196 KGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHG-S- 272 (759)
Q Consensus 196 ~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g-~- 272 (759)
..+..+..-+..|.=.|||.-+|.|||.-++-++...... ...|+++++.-....++...+......+... +..| .
T Consensus 209 ~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~-~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l 287 (472)
T PRK06904 209 TDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA-SEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNL 287 (472)
T ss_pred HHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCCCC
Confidence 3355555555556667999999999999988887766432 2358999999877777776654333222211 1123 1
Q ss_pred -hhHHHHHHHhcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhc-CccEEEEcCccccc
Q 004347 273 -KKERDEIRRKHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHY-NWKYLVVDEGHRLK 327 (759)
Q Consensus 273 -~~~r~~~~~~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~~-~~~~lIvDEaH~ik 327 (759)
..+...+.... .......++.| .|...+....+...... +.++||||=.|.+.
T Consensus 288 ~~~e~~~~~~a~--~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 288 DQQDWAKISSTV--GMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred CHHHHHHHHHHH--HHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 11211111110 00111223444 24555665554444433 57899999888875
No 309
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.94 E-value=1.4 Score=48.52 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=59.2
Q ss_pred HHHHHHHH-HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChh
Q 004347 196 KGVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKK 274 (759)
Q Consensus 196 ~gv~~l~~-~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~ 274 (759)
.++..++. -+..|.-.+|.-++|.|||..++.++..+...+ +++|+|.-.....+......++.-..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g--~~VlYvs~EEs~~qi~~Ra~rlg~~~---------- 136 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--GKVLYVSGEESPEQIKLRADRLGIST---------- 136 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEECCcCHHHHHHHHHHcCCCc----------
Confidence 44555552 112233358899999999999998888776643 58888876555555444343332100
Q ss_pred HHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 275 ERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 275 ~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
-++.+..... ...+...+...+.++||||+.+.+.
T Consensus 137 -----------------~~l~l~~e~~-le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 137 -----------------ENLYLLAETN-LEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred -----------------ccEEEEccCc-HHHHHHHHHhcCCcEEEEcchHHhh
Confidence 0122211111 1122234456688999999999874
No 310
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=89.85 E-value=2.2 Score=50.62 Aligned_cols=94 Identities=12% Similarity=0.114 Sum_probs=63.9
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHH----HHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIME----YYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFL 587 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~----~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 587 (759)
.|||-.+..-.+-.....|.+++|-++....+..+. .++...|++++.++|+++..+|..+++...+++ +.|++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~--~~IiV 343 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ--IHLVV 343 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC--CCEEE
Confidence 477876543333333456889999998877655444 444455899999999999999999999888643 44444
Q ss_pred EecccccCCCCCCCCCEEEE
Q 004347 588 LSTRAGGLGINLTAADTCIL 607 (759)
Q Consensus 588 lsT~agg~GINL~~a~~VI~ 607 (759)
.+....-..+.+.....||+
T Consensus 344 gT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 344 GTHALIQEKVEFKRLALVII 363 (630)
T ss_pred ecHHHHhccccccccceEEE
Confidence 44444445566777776665
No 311
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=89.75 E-value=5.7 Score=43.54 Aligned_cols=135 Identities=21% Similarity=0.133 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRA 287 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~ 287 (759)
++...|.-+||.|||.+..-+++.+.......++=||+--.----=..++..++.-+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im----------------------- 259 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIM----------------------- 259 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHh-----------------------
Confidence 455678899999999887666665553333455655554332211223333332100
Q ss_pred CCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhh--HHHHHHhcC--CCCcEEEEecCCCCCCHHHHHhh
Q 004347 288 IGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKC--KLLKELKYI--PIGNKLLLTGTPLQNNLAELWSL 363 (759)
Q Consensus 288 ~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s--~~~~~l~~l--~~~~rllLTgTPl~n~~~el~sl 363 (759)
+-+-.++.++.-+...+ ..|..+ |+|.||=+-+---... .-.+++... ....-|.||+|-=...+.+++..
T Consensus 260 --~vp~~vv~~~~el~~ai-~~l~~~--d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 260 --GVPLEVVYSPKELAEAI-EALRDC--DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred --CCceEEecCHHHHHHHH-HHhhcC--CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 11123445555454443 445544 8999997765422111 122222222 23455899999988899999888
Q ss_pred hhhccCC
Q 004347 364 LHFILPD 370 (759)
Q Consensus 364 l~fl~p~ 370 (759)
+.++...
T Consensus 335 f~~~~i~ 341 (407)
T COG1419 335 FSLFPID 341 (407)
T ss_pred hccCCcc
Confidence 8877654
No 312
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=89.72 E-value=1.5 Score=45.97 Aligned_cols=51 Identities=18% Similarity=0.082 Sum_probs=35.6
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEI 257 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~ 257 (759)
..|.-.+|+..+|+|||..++.++..+... ...+++++.--.....+...+
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccCHHHHHHHH
Confidence 445567999999999999999888776543 135788887654444444444
No 313
>PRK05642 DNA replication initiation factor; Validated
Probab=89.64 E-value=1.9 Score=44.14 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=25.0
Q ss_pred ccEEEEcCcccccChh---hHHHHHHhcCC-CCcEEEEecC
Q 004347 315 WKYLVVDEGHRLKNPK---CKLLKELKYIP-IGNKLLLTGT 351 (759)
Q Consensus 315 ~~~lIvDEaH~ikn~~---s~~~~~l~~l~-~~~rllLTgT 351 (759)
.++||||+.|.+.+.. ..++..+..+. ...++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 4799999999886432 33555555443 3567888887
No 314
>PRK13342 recombination factor protein RarA; Reviewed
Probab=89.49 E-value=2.5 Score=47.38 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=18.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHH
Q 004347 209 LNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~ 231 (759)
.+.||.-+.|+|||..+-++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999887776554
No 315
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.43 E-value=1.8 Score=48.77 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCCh
Q 004347 195 LKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGSK 273 (759)
Q Consensus 195 ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~~ 273 (759)
..++.-++.-+..|.-.+|+..+|.|||.-++.++..+... ...++++++.-..-.+....+.....++... +..|.-
T Consensus 182 ~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~SlEm~~~~i~~R~~~~~~~v~~~~~~~g~l 260 (434)
T TIGR00665 182 FTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIK-EGKPVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKL 260 (434)
T ss_pred chhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHhccCCC
Confidence 34455554334445556999999999999999888776542 1258899988666555554443332222111 112211
Q ss_pred --hHHHHHHHhcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 274 --KERDEIRRKHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 274 --~~r~~~~~~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
.+...+.... ... ...++.| .|.+.+...++......+.++||||=.|.+.
T Consensus 261 ~~~~~~~~~~a~--~~l-~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 261 SDEDWEKLTSAA--GKL-SEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMS 318 (434)
T ss_pred CHHHHHHHHHHH--HHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcC
Confidence 1111111100 000 1223444 2445555555555556678999999888775
No 316
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=89.33 E-value=2.5 Score=42.96 Aligned_cols=37 Identities=16% Similarity=0.042 Sum_probs=26.3
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
.+...+|.-+.|+|||..+.++...+...+ .+++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEe
Confidence 345678999999999998888877765542 3444444
No 317
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=89.31 E-value=3 Score=50.05 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=31.6
Q ss_pred cchhHHHHHHHHHHH-hh-cCC-Ce-EEEcCCCCcHHHHHHHHHHHHHh
Q 004347 190 LKSYQLKGVKWLISL-WQ-NGL-NG-ILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~-~~-~~~-~~-ILademGlGKTl~ai~li~~l~~ 234 (759)
=|+-|...|...+.- .. .+. ++ +|.-.+|+|||.++-.++..|..
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 467787777655543 22 233 33 38999999999999988887754
No 318
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.28 E-value=2.4 Score=43.39 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=60.9
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHH-HhCC-CceEEEEeCChh--HHHHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS-RFVP-SVSAIIYHGSKK--ERDEIRR 281 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~-~~~p-~~~~~~~~g~~~--~r~~~~~ 281 (759)
..|.-.+|+..+|+|||..++.++....... ..++++++.-..-..-...+. .... .... +..+... ....+..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 88 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEMSKEQLLQRLLASESGISLSK-LRTGSLSDEDWERLAE 88 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCCCHHHHHHHHHHHhcCCCHHH-HhcCCCCHHHHHHHHH
Confidence 3454568999999999999998887776541 358899986443322222221 1110 0000 1111111 1111100
Q ss_pred hcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhcCccEEEEcCcccccC
Q 004347 282 KHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 282 ~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn 328 (759)
.. ... ...++.| .+.+.+...+.......+.++||||=.+.+..
T Consensus 89 ~~--~~~-~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~ 137 (242)
T cd00984 89 AI--GEL-KELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSG 137 (242)
T ss_pred HH--HHH-hcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCC
Confidence 00 000 1122333 24555655554555556889999998887753
No 319
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=89.13 E-value=1.7 Score=44.19 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=63.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhC-CCCCCeEEEECCccHHHHHHHHHHhCCCc-------eEEEEeCChhHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISRFVPSV-------SAIIYHGSKKERDEI 279 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~-~~~~~~LIV~P~sll~~W~~E~~~~~p~~-------~~~~~~g~~~~r~~~ 279 (759)
|...+++-+.|+|||+-++.++..-... | .+++.|+-.....++.+.+..+..++ ...++........
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~-- 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFG--EKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG-- 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST--
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcC--CcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc--
Confidence 3445889999999999999988766554 4 48899998777788888887764221 1222222221100
Q ss_pred HHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccc
Q 004347 280 RRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRL 326 (759)
Q Consensus 280 ~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~i 326 (759)
.. -.+.+.+...+...+...+.+++|||=...+
T Consensus 95 ------------~~--~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 ------------WS--PNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -------------T--SCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ------------cc--ccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 00 2234555555556677777799999977666
No 320
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=88.98 E-value=2.1 Score=47.06 Aligned_cols=61 Identities=26% Similarity=0.304 Sum_probs=46.0
Q ss_pred ccchhHHHHHHHHHHHh--hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHH
Q 004347 189 KLKSYQLKGVKWLISLW--QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLS 251 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~--~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~ 251 (759)
+|-+-|..++.+++... ..+.+..|.-.-|+|||...=+++..+... ..++++++|+.+-.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~--~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR--GKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc--cceEEEecchHHHH
Confidence 36678999988887665 445566888889999999877777766553 45899999977644
No 321
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.97 E-value=4.5 Score=47.50 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 194 QLKGVKWLISLWQNGL--N-GILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~--~-~ILademGlGKTl~ai~li~~l~~~ 235 (759)
|...+..+...+.++. + -|+.-+.|+|||..|..++..+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5566666666555542 2 4788999999999999998887653
No 322
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=88.89 E-value=1.8 Score=48.88 Aligned_cols=35 Identities=29% Similarity=0.276 Sum_probs=26.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
..+|.-+.|+|||..+-+++..+...+ .+++.+..
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~--~~v~yi~~ 177 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESG--GKILYVRS 177 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEeeH
Confidence 357888999999999988888887643 45555543
No 323
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=88.89 E-value=3.2 Score=39.64 Aligned_cols=139 Identities=15% Similarity=0.063 Sum_probs=72.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC-CccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP-LSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGP 290 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P-~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~ 290 (759)
.+.-..|.|||-.|++++......| .++++|== +.-...=...+.+.+|++.+..+..+..-. . .
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~~g--~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~---------~---~ 71 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALGHG--YRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWT---------T---E 71 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccC---------C---C
Confidence 4556689999999998887766654 46666311 100000012233334555544433211000 0 0
Q ss_pred CCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC----hhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhh
Q 004347 291 KFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN----PKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLL 364 (759)
Q Consensus 291 ~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn----~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll 364 (759)
...--...........+..+....+++||+||.=..-+ ....+...+..-+...-++|||--.+..+.++..++
T Consensus 72 ~~~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~V 149 (159)
T cd00561 72 NDEEDIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLV 149 (159)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCcee
Confidence 00000000011122223456667899999999877643 334567777776677789999976555444444333
No 324
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=88.88 E-value=5.1 Score=40.56 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=38.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhC
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFV 261 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 261 (759)
-.+++.++|+|||..++.++...... ..++++++-.....+-.+.+..+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEEREERILGYAKSKG 67 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHcC
Confidence 34788899999999999888776554 368999998777777666666653
No 325
>PRK05748 replicative DNA helicase; Provisional
Probab=88.86 E-value=2.2 Score=48.34 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCCh
Q 004347 195 LKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGSK 273 (759)
Q Consensus 195 ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~~ 273 (759)
..++.-+..-+..|.-.+||..+|.|||.-++.++...... ...++++++.-..-.++...+......+... +..|.-
T Consensus 190 ~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~l 268 (448)
T PRK05748 190 FTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQL 268 (448)
T ss_pred hHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCCC
Confidence 44455555445555557999999999999999988776432 2358899988766666665553222222211 112221
Q ss_pred hHHH--HHHHhcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhc-CccEEEEcCccccc
Q 004347 274 KERD--EIRRKHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHY-NWKYLVVDEGHRLK 327 (759)
Q Consensus 274 ~~r~--~~~~~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~~-~~~~lIvDEaH~ik 327 (759)
.... .+.... ... ...++.| .|.+.+...++.+.... +.++||||=.|.+.
T Consensus 269 ~~~e~~~~~~a~--~~l-~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 269 TDDDWPKLTIAM--GSL-SDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred CHHHHHHHHHHH--HHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1111 110000 000 1233444 24455555554444444 68999999988885
No 326
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=88.78 E-value=1.8 Score=45.31 Aligned_cols=43 Identities=23% Similarity=0.099 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHhh--cCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 192 SYQLKGVKWLISLWQ--NGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 192 pyQ~~gv~~l~~~~~--~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
-+|...|.-+..... ...+-++.-+.|+|||-++.++.+.|..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 367777777765443 3445688899999999999999998865
No 327
>PRK04132 replication factor C small subunit; Provisional
Probab=88.65 E-value=1.7 Score=52.60 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=62.2
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc--HHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCC
Q 004347 215 DQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST--LSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKF 292 (759)
Q Consensus 215 demGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl--l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~ 292 (759)
.+.++|||-.|.+++..+...+...+++-+-+... +..-.+-+..+.. .
T Consensus 573 lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~----------------------------~- 623 (846)
T PRK04132 573 LPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFAR----------------------------T- 623 (846)
T ss_pred CCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHh----------------------------c-
Confidence 47789999999999888765443445666665442 2221111111110 0
Q ss_pred CEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC-hhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhh
Q 004347 293 PIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN-PKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSL 363 (759)
Q Consensus 293 ~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sl 363 (759)
..+...++.++||||||++-. ....+.+.+...+...+++|+.++...-+.-|.|-
T Consensus 624 ---------------~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSR 680 (846)
T PRK04132 624 ---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 680 (846)
T ss_pred ---------------CCcCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhh
Confidence 001112478999999999963 33345555555567778899888766555555543
No 328
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=88.56 E-value=6.8 Score=41.43 Aligned_cols=145 Identities=13% Similarity=0.068 Sum_probs=75.3
Q ss_pred cchhHHHHHHHHHHHhhcCC--CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE
Q 004347 190 LKSYQLKGVKWLISLWQNGL--NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI 267 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~--~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~ 267 (759)
|...|-..+..+...+.+++ .++|... |.||+..|..|+..+...+..+. .|-..+..-..-...-+|++..+
T Consensus 3 l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~~~~~----~~Cg~C~~C~~i~~~~HPD~~~i 77 (290)
T PRK07276 3 LKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQKEGV----LPCGHCRSCRLIEQGEFSDVTVI 77 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHhcCCCCCeeee
Confidence 55667777777777666554 3444443 68999999999988876432211 02222222211122234444322
Q ss_pred EEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh----hcCccEEEEcCcccccC-hhhHHHHHHhcCCC
Q 004347 268 IYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR----HYNWKYLVVDEGHRLKN-PKCKLLKELKYIPI 342 (759)
Q Consensus 268 ~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~----~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~ 342 (759)
.-.|. ..+.+.++.-. ..+. ..+|+++|||+||++.. ....+.+.+..-+.
T Consensus 78 ~p~~~-----------------------~I~idqIR~l~-~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~ 133 (290)
T PRK07276 78 EPQGQ-----------------------VIKTDTIRELV-KNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQS 133 (290)
T ss_pred cCCCC-----------------------cCCHHHHHHHH-HHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCC
Confidence 11110 12233333322 2222 23589999999999974 33345555555555
Q ss_pred CcEEEEecCCCCCCHHHHHhh
Q 004347 343 GNKLLLTGTPLQNNLAELWSL 363 (759)
Q Consensus 343 ~~rllLTgTPl~n~~~el~sl 363 (759)
...++|++.-...-+.-+.|-
T Consensus 134 ~t~~iL~t~~~~~lLpTI~SR 154 (290)
T PRK07276 134 EIYIFLLTNDENKVLPTIKSR 154 (290)
T ss_pred CeEEEEEECChhhCchHHHHc
Confidence 555555554334444445443
No 329
>PRK09183 transposase/IS protein; Provisional
Probab=88.52 E-value=2.3 Score=44.29 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 194 QLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
++.++.|+ .++.+.+|.-++|+|||..+.++...+...| ..++++.
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G--~~v~~~~ 137 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAVRAG--IKVRFTT 137 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEe
Confidence 34444553 4578889999999999999988876665543 3555544
No 330
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=88.48 E-value=3.3 Score=51.02 Aligned_cols=129 Identities=16% Similarity=0.087 Sum_probs=73.1
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceE
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSA 266 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~ 266 (759)
+..|.+-|..+|..++. ...-.+|.-..|+|||.+.-+++..+...| ..++.++|+.....=..+ -. +..
T Consensus 344 g~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G--~~V~~~ApTGkAA~~L~e---~t-Gi~- 413 (988)
T PRK13889 344 GLVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGVAREAWEAAG--YEVRGAALSGIAAENLEG---GS-GIA- 413 (988)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEecCcHHHHHHHhh---cc-Ccc-
Confidence 45799999999998773 122357888899999987544444433333 478889997754432221 00 000
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH-HHhhhhcCccEEEEcCcccccChhhHHHHHHhcC-CCCc
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA-RKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI-PIGN 344 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~-~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l-~~~~ 344 (759)
. .|...+...+ .........++|||||+-.+... .+.+.+... ....
T Consensus 414 ----a-------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~--~m~~LL~~a~~~ga 462 (988)
T PRK13889 414 ----S-------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR--QLERVLSHAADAGA 462 (988)
T ss_pred ----h-------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCHH--HHHHHHHhhhhCCC
Confidence 0 0000000000 00001123479999999988543 333444433 5678
Q ss_pred EEEEecCCCCCC
Q 004347 345 KLLLTGTPLQNN 356 (759)
Q Consensus 345 rllLTgTPl~n~ 356 (759)
+++|.|=|-|-.
T Consensus 463 rvVLVGD~~QLp 474 (988)
T PRK13889 463 KVVLVGDPQQLQ 474 (988)
T ss_pred EEEEECCHHHcC
Confidence 999999876543
No 331
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.47 E-value=2.9 Score=46.85 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=27.2
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
...+++-.+|+|||.++..++.++...| .++++|+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~ 131 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAA 131 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEecC
Confidence 3457888999999999999988887654 35555554
No 332
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=88.46 E-value=2.3 Score=41.73 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=58.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPK 291 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~ 291 (759)
++.-.|++|||..-|-.+......| .+++|..|..= ..+....+.--.|. ..
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g--~~v~vfkp~iD---------~R~~~~~V~Sr~G~-----------------~~ 59 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAG--MKVLVFKPAID---------TRYGVGKVSSRIGL-----------------SS 59 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcC--CeEEEEecccc---------cccccceeeeccCC-----------------cc
Confidence 6778899999998777666666553 58899988431 11111111111111 11
Q ss_pred CCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCC--CcEEEEecC
Q 004347 292 FPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPI--GNKLLLTGT 351 (759)
Q Consensus 292 ~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~--~~rllLTgT 351 (759)
.-++|-+-..+...+...-.....++|.|||||-+.. .+...+..+.. ..++++.|.
T Consensus 60 ~A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 1233434333433332211222268999999999865 34444555533 455666663
No 333
>PRK04195 replication factor C large subunit; Provisional
Probab=88.43 E-value=5.2 Score=45.82 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHhhc---CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 192 SYQLKGVKWLISLWQN---GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 192 pyQ~~gv~~l~~~~~~---~~~~ILademGlGKTl~ai~li~~l 232 (759)
+.+..-+.-.+..|.+ ....+|.-+.|+|||..+-+++..+
T Consensus 20 ~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 20 EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3444444333333443 4567999999999998888777665
No 334
>PRK11054 helD DNA helicase IV; Provisional
Probab=88.29 E-value=1 Score=53.50 Aligned_cols=69 Identities=20% Similarity=0.110 Sum_probs=51.7
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC--CCCeEEEECCccHHHHHHH-HHHhC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL--HGPYLVIAPLSTLSNWVNE-ISRFV 261 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~--~~~~LIV~P~sll~~W~~E-~~~~~ 261 (759)
...|.+-|.++|..- ..+.++....|+|||.+.++-+.+|...+. ...+|++|.+....+.+++ +....
T Consensus 194 ~~~L~~~Q~~av~~~------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 194 SSPLNPSQARAVVNG------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCCHHHHHHHhCC------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 467999999998633 234555666999999999999999987553 3469999998877776665 55444
No 335
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.28 E-value=3.6 Score=43.72 Aligned_cols=123 Identities=24% Similarity=0.304 Sum_probs=68.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPK 291 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~ 291 (759)
++.---|.|||.+..-++.++...| .++|+.+--.--.-=.+++.-|.-...+-++.+.. +.+
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~g--~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~---------------G~D 205 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQG--KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKE---------------GAD 205 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHCC--CeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCC---------------CCC
Confidence 5666789999988888888887764 45555555333334455566665333332222210 000
Q ss_pred CCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC---------CCCcEEEE--ecCCCCCCHHH
Q 004347 292 FPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI---------PIGNKLLL--TGTPLQNNLAE 359 (759)
Q Consensus 292 ~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l---------~~~~rllL--TgTPl~n~~~e 359 (759)
+..+.-+.-..-...++|+|+||=|-|+-|.. .++..|.++ .++|.++| =||-=||.+..
T Consensus 206 -------pAaVafDAi~~Akar~~DvvliDTAGRLhnk~-nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 206 -------PAAVAFDAIQAAKARGIDVVLIDTAGRLHNKK-NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred -------cHHHHHHHHHHHHHcCCCEEEEeCcccccCch-hHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 01111121234455688999999999997633 333334333 23455444 48877776554
No 336
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=88.28 E-value=0.39 Score=57.39 Aligned_cols=111 Identities=24% Similarity=0.264 Sum_probs=74.3
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-----HHHHHHHHHhCCCceEEEEeCChhHHHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-----SNWVNEISRFVPSVSAIIYHGSKKERDEIR 280 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-----~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~ 280 (759)
.-..+.++.+.+|.|||+.+-..+.......+.+++.+|+|..-+ ..|..-+. .|+++++-..|.....-
T Consensus 941 ~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd~--- 1015 (1230)
T KOG0952|consen 941 HTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPDV--- 1015 (1230)
T ss_pred ecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCCh---
Confidence 334566889999999999987666666666677899999995433 45765443 34677777777543210
Q ss_pred HhcCCCCCCCCCCEEEecHHHHHHHHH-----HhhhhcCccEEEEcCcccccCh
Q 004347 281 RKHMPRAIGPKFPIVVTSYEVALSDAR-----KYLRHYNWKYLVVDEGHRLKNP 329 (759)
Q Consensus 281 ~~~~~~~~~~~~~vvIttye~l~~~~~-----~~l~~~~~~~lIvDEaH~ikn~ 329 (759)
..-...+++|||++..-...+ ++++. +..+|+||.|.+...
T Consensus 1016 ------~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~--v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1016 ------KAVREADIVITTPEKWDGISRSWQTRKYVQS--VSLIVLDEIHLLGED 1061 (1230)
T ss_pred ------hheecCceEEcccccccCccccccchhhhcc--ccceeecccccccCC
Confidence 011356899999987543322 33443 467999999998753
No 337
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=88.27 E-value=3.3 Score=46.53 Aligned_cols=129 Identities=12% Similarity=0.078 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCCh-
Q 004347 196 KGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGSK- 273 (759)
Q Consensus 196 ~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~~- 273 (759)
..+..++.-+..|.-.+||..+|.|||.-++.++..+... ...|+++++.-.-..++...+.....++... +..|..
T Consensus 182 ~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~ 260 (421)
T TIGR03600 182 PKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFN 260 (421)
T ss_pred hhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCC
Confidence 3455555444555556999999999999999988766521 2368999987655555544433222121111 112211
Q ss_pred -hHHHHHHHhcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhc-CccEEEEcCcccccC
Q 004347 274 -KERDEIRRKHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHY-NWKYLVVDEGHRLKN 328 (759)
Q Consensus 274 -~~r~~~~~~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~~-~~~~lIvDEaH~ikn 328 (759)
.+...+.... ... ...+++| .|.+.+...++.+-... +.++||||=.|.+..
T Consensus 261 ~~~~~~~~~~~--~~l-~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 261 DSDFNRLLNAV--DRL-SEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHH--HHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 1111111000 000 1223344 23444555443333333 588999998888763
No 338
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.22 E-value=2.4 Score=50.24 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=73.5
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc-C-ceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK-G-YEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS 589 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~-g-~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls 589 (759)
.|||-+...+++...+..|+.+||...-+.....+...|..+ | ..+..+|+.++..+|.+...+...+ ..+ ++|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G--~~~-IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG--QAR-VVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC--CCc-EEEE
Confidence 589999999999999999999999999999888888888765 4 6799999999999999999888764 344 4777
Q ss_pred cccccCCCCCCCCCEEEEeC
Q 004347 590 TRAGGLGINLTAADTCILYD 609 (759)
Q Consensus 590 T~agg~GINL~~a~~VI~~D 609 (759)
|+++-. .-+.+-..||+-|
T Consensus 247 tRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred cceeEE-eccCCCCEEEEEc
Confidence 776531 2333444555543
No 339
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.21 E-value=1.7 Score=39.45 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=23.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL 250 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll 250 (759)
+|.-+.|+|||..+-.++..+. .+++.+....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhcc-----cccccccccccc
Confidence 6777899999988887777652 245555554433
No 340
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=88.19 E-value=4.2 Score=41.67 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=36.9
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
.|...+++-+.|+|||..++.++...... ..++++|+-.....+-.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeCCHHHHHHHHHHh
Confidence 34456889999999999999888776554 35888888655555555544443
No 341
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=88.12 E-value=4.1 Score=47.52 Aligned_cols=150 Identities=16% Similarity=0.125 Sum_probs=78.7
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHH----HH-----H
Q 004347 190 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNE----IS-----R 259 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E----~~-----~ 259 (759)
.-|+=..-|..++..|.+...+++++ =|-|||..+..++.++.... ...++|.+|.. +...-.+. +. .
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~-Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~ 247 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFL-EIDIVVQAQRKTMCLTLYNRVETVVHAYQHKP 247 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhc-CCeEEEECCChhhHHHHHHHHHHHHHHhcccc
Confidence 34555666888898888888877776 79999998776666665422 25789999933 33332222 22 4
Q ss_pred hCCCce-EEEEeCChhHHHHHHHhcCCCCCC-CCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHH
Q 004347 260 FVPSVS-AIIYHGSKKERDEIRRKHMPRAIG-PKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKEL 337 (759)
Q Consensus 260 ~~p~~~-~~~~~g~~~~r~~~~~~~~~~~~~-~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l 337 (759)
|+|... +....|....- ....+.... +...+...+-. ....+...+++||||||+.+.... +...+
T Consensus 248 ~fp~~~~iv~vkgg~E~I----~f~~p~gak~G~sti~F~Ars------~~s~RG~~~DLLIVDEAAfI~~~~--l~aIl 315 (752)
T PHA03333 248 WFPEEFKIVTLKGTDENL----EYISDPAAKEGKTTAHFLASS------PNAARGQNPDLVIVDEAAFVNPGA--LLSVL 315 (752)
T ss_pred ccCCCceEEEeeCCeeEE----EEecCcccccCcceeEEeccc------CCCcCCCCCCEEEEECcccCCHHH--HHHHH
Confidence 666442 22222211100 000000000 00112221111 133455678999999999997622 22222
Q ss_pred hcCC-CCcEEEEecCCC
Q 004347 338 KYIP-IGNKLLLTGTPL 353 (759)
Q Consensus 338 ~~l~-~~~rllLTgTPl 353 (759)
-.+. ...++.+.-||.
T Consensus 316 P~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 316 PLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHccCCCceEEEeCCC
Confidence 2222 355566666664
No 342
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.91 E-value=2.5 Score=51.85 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHHHh--hcCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 196 KGVKWLISLW--QNGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 196 ~gv~~l~~~~--~~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
.-++.++... ....|.||.-+.|.|||..+-+++..+..
T Consensus 185 ~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 185 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 3466666532 33457899999999999998888776654
No 343
>PRK05973 replicative DNA helicase; Provisional
Probab=87.87 E-value=2.4 Score=43.35 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=41.1
Q ss_pred HHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 200 WLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 200 ~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
++..-+.+|.-.+|+..+|+|||+-++-++...... ..++++++--..-.+-...+..+
T Consensus 56 ~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 56 ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCCHHHHHHHHHHc
Confidence 344444556667999999999999999998877655 35788888655544444444443
No 344
>PRK08506 replicative DNA helicase; Provisional
Probab=87.76 E-value=2.6 Score=47.97 Aligned_cols=128 Identities=12% Similarity=0.091 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCC-
Q 004347 195 LKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGS- 272 (759)
Q Consensus 195 ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~- 272 (759)
...+.-+..-+..|.-.|||..+|.|||.-++.++...... ..++++++.-....++...+......+..- +..|.
T Consensus 179 ~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~--g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l 256 (472)
T PRK08506 179 FVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ--DKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDL 256 (472)
T ss_pred hHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc--CCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 44455555445555556999999999999999888877543 358999988776666665553322121110 11122
Q ss_pred -hhHHHHHHHhcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhc-CccEEEEcCccccc
Q 004347 273 -KKERDEIRRKHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHY-NWKYLVVDEGHRLK 327 (759)
Q Consensus 273 -~~~r~~~~~~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~~-~~~~lIvDEaH~ik 327 (759)
..+...+.... ... ...+++| .|...+...++.+.... +.++||||=.|.+.
T Consensus 257 ~~~e~~~~~~a~--~~l-~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 257 DDDEWERLSDAC--DEL-SKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred CHHHHHHHHHHH--HHH-HcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 11111111000 000 1223444 24555555554433332 47899999888775
No 345
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.66 E-value=11 Score=39.59 Aligned_cols=126 Identities=12% Similarity=0.157 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC----ccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhc
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL----STLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKH 283 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~----sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~ 283 (759)
+....+.-..|+|||..+..++..+... ..++.+|+-. ..+.||.......
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~~----------------------- 129 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTI----------------------- 129 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhhhc-----------------------
Confidence 4556788889999999877777666543 2456555552 2445554332211
Q ss_pred CCCCCCCCCCEEE-ecHHHHHHHHHHhhhh-cCccEEEEcCcccccChhhH---HHHHHhcCCC-CcEEEEecCCCCCCH
Q 004347 284 MPRAIGPKFPIVV-TSYEVALSDARKYLRH-YNWKYLVVDEGHRLKNPKCK---LLKELKYIPI-GNKLLLTGTPLQNNL 357 (759)
Q Consensus 284 ~~~~~~~~~~vvI-ttye~l~~~~~~~l~~-~~~~~lIvDEaH~ikn~~s~---~~~~l~~l~~-~~rllLTgTPl~n~~ 357 (759)
.++++. .+...+...+ ..+.. .++++||||-+=+.-+.... +...+..... ...+.|+||--.+..
T Consensus 130 -------~~~~~~~~~~~~l~~~l-~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 130 -------GFEVIAVRDEAAMTRAL-TYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred -------CceEEecCCHHHHHHHH-HHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 122222 2333333322 23332 36899999999776432221 2222222222 234678888766666
Q ss_pred HHHHhhhhh
Q 004347 358 AELWSLLHF 366 (759)
Q Consensus 358 ~el~sll~f 366 (759)
.+....++-
T Consensus 202 ~~~~~~f~~ 210 (270)
T PRK06731 202 IEIITNFKD 210 (270)
T ss_pred HHHHHHhCC
Confidence 665554443
No 346
>PRK08840 replicative DNA helicase; Provisional
Probab=87.65 E-value=3.5 Score=46.79 Aligned_cols=127 Identities=15% Similarity=0.118 Sum_probs=69.5
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCC--hh
Q 004347 198 VKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGS--KK 274 (759)
Q Consensus 198 v~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~--~~ 274 (759)
+..+..-++.|.=.|||.-+|.|||.-++-++...... ...|++++..-....++...+-.....+... +..|. ..
T Consensus 207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~ 285 (464)
T PRK08840 207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDE 285 (464)
T ss_pred HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCCCHH
Confidence 55555545556667999999999999988777765432 2468999988777777766554332222111 11221 11
Q ss_pred HHHHHHHhcCCCCCCCCCCEEEe-----cHHHHHHHHHHhhhhc-CccEEEEcCccccc
Q 004347 275 ERDEIRRKHMPRAIGPKFPIVVT-----SYEVALSDARKYLRHY-NWKYLVVDEGHRLK 327 (759)
Q Consensus 275 ~r~~~~~~~~~~~~~~~~~vvIt-----tye~l~~~~~~~l~~~-~~~~lIvDEaH~ik 327 (759)
+...+.... .......++.|. |...+....+.+.... +.++||||=.|.++
T Consensus 286 e~~~~~~a~--~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 286 DWARISSTM--GILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHH--HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 211111100 000012234442 3444555544443333 47999999988886
No 347
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=87.59 E-value=4.5 Score=43.38 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCcHHHHHHHHHHHHHhCC
Q 004347 194 QLKGVKWLISLWQNGL---NGILADQMGLGKTIQTIAFLAHLKGNG 236 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~---~~ILademGlGKTl~ai~li~~l~~~~ 236 (759)
|..++..+.....+++ .-++.-+.|+||+..|.+++..+...+
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5556666666665553 348888999999999999999988654
No 348
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=87.42 E-value=1.2 Score=52.64 Aligned_cols=81 Identities=21% Similarity=0.309 Sum_probs=68.3
Q ss_pred HhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc-CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEE
Q 004347 510 VEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK-GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLL 588 (759)
Q Consensus 510 ~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Ll 588 (759)
+..|||.++..+++...++.|+.+||-..-+.....+...|..+ |.++..+|++.+..+|.+...+... +..+| +|
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~--G~~~v-VI 301 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARR--GEARV-VI 301 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhc--CCceE-EE
Confidence 45699999999999999999999999999988877777777665 8899999999999999999999887 45555 55
Q ss_pred ecccc
Q 004347 589 STRAG 593 (759)
Q Consensus 589 sT~ag 593 (759)
.|+.+
T Consensus 302 GtRSA 306 (730)
T COG1198 302 GTRSA 306 (730)
T ss_pred Eechh
Confidence 55543
No 349
>PRK05595 replicative DNA helicase; Provisional
Probab=87.42 E-value=1.4 Score=49.75 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHH-hCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEE-EeCC
Q 004347 195 LKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAII-YHGS 272 (759)
Q Consensus 195 ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~-~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~-~~g~ 272 (759)
..++.-+..-+..|.-.+||..+|.|||.-++.++.++. .. ..+++++..-..-.++...+.....++.... ..|.
T Consensus 188 ~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~--g~~vl~fSlEms~~~l~~R~~a~~~~v~~~~~~~~~ 265 (444)
T PRK05595 188 FRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALRE--GKSVAIFSLEMSKEQLAYKLLCSEANVDMLRLRTGN 265 (444)
T ss_pred hHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCC
Confidence 344555554445555568999999999999998887654 33 3588999887666666666443322222111 1221
Q ss_pred --hhHHHHHHHhcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 273 --KKERDEIRRKHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 273 --~~~r~~~~~~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
..+...+.... ... ...++.| .|.+.+...++.+....+.++||||=.|.+.
T Consensus 266 l~~~e~~~~~~~~--~~l-~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~ 324 (444)
T PRK05595 266 LEDKDWENIARAS--GPL-AAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMS 324 (444)
T ss_pred CCHHHHHHHHHHH--HHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhcc
Confidence 11111111110 000 1122333 2345555555454455678899999666554
No 350
>PRK08006 replicative DNA helicase; Provisional
Probab=87.38 E-value=3.8 Score=46.57 Aligned_cols=127 Identities=14% Similarity=0.094 Sum_probs=71.1
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCC--hh
Q 004347 198 VKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGS--KK 274 (759)
Q Consensus 198 v~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~--~~ 274 (759)
+..+..-++.|.=.|||.-+|.|||.-++.++...... ...+++++..-....++...+..-...+... +..|. ..
T Consensus 214 LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~ 292 (471)
T PRK08006 214 LNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDE 292 (471)
T ss_pred HHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCCHH
Confidence 55555555555556999999999999998888776532 2368999988776777665554332222111 11222 11
Q ss_pred HHHHHHHhcCCCCCCCCCCEEEe-----cHHHHHHHHHHhhhhc-CccEEEEcCccccc
Q 004347 275 ERDEIRRKHMPRAIGPKFPIVVT-----SYEVALSDARKYLRHY-NWKYLVVDEGHRLK 327 (759)
Q Consensus 275 ~r~~~~~~~~~~~~~~~~~vvIt-----tye~l~~~~~~~l~~~-~~~~lIvDEaH~ik 327 (759)
+...+.... .......++.|. |...+....+.+.... +.++||||=.|.+.
T Consensus 293 e~~~~~~a~--~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 293 DWARISGTM--GILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHH--HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 111111100 000012334442 4455555554544444 58999999888775
No 351
>PTZ00293 thymidine kinase; Provisional
Probab=87.35 E-value=2 Score=43.08 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=26.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s 248 (759)
++.-.||+|||...|-.+..+... ..+++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~a--g~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYS--EKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHc--CCceEEEEecc
Confidence 678889999998877776655554 36899999943
No 352
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.12 E-value=2.1 Score=52.32 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=22.7
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
...|.||.-+.|.|||..+-+++..+..
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457799999999999998888777654
No 353
>PRK10867 signal recognition particle protein; Provisional
Probab=86.78 E-value=6.3 Score=44.15 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=26.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
.+++-..|+|||.++.-++.++...+ ..++++|+=
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~ 137 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAA 137 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence 46788899999999999998887762 245555554
No 354
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=86.67 E-value=1.7 Score=46.58 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=72.5
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceE
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSA 266 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~ 266 (759)
.+.+.+.|..-+..++ ..+.|.|++-.||+|||...-+++..+.......++++|=....+ . ++..+.
T Consensus 126 ~g~~~~~~~~~L~~~v---~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El-------~--~~~~n~ 193 (323)
T PRK13833 126 SKIMTEAQASVIRSAI---DSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI-------Q--CAAENA 193 (323)
T ss_pred cCCCCHHHHHHHHHHH---HcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc-------c--cCCCCE
Confidence 3456666765554444 567888999999999999888888777543333454444332222 1 122222
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEE
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKL 346 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rl 346 (759)
+.+... . ..|+..+.. ..| ..+++++|+.|.- .. ....++....+.|.-
T Consensus 194 v~l~~~-----------------~-----~~~~~~lv~---~aL-R~~PD~IivGEiR---g~--ea~~~l~a~~tGh~G 242 (323)
T PRK13833 194 VALHTS-----------------D-----TVDMARLLK---STM-RLRPDRIIVGEVR---DG--AALTLLKAWNTGHPG 242 (323)
T ss_pred EEeccC-----------------C-----CcCHHHHHH---HHh-CCCCCEEEEeecC---CH--HHHHHHHHHcCCCCc
Confidence 222110 0 123443332 233 4678999999974 22 234456666666653
Q ss_pred EEecCCCCCCHHHHHh
Q 004347 347 LLTGTPLQNNLAELWS 362 (759)
Q Consensus 347 lLTgTPl~n~~~el~s 362 (759)
.+ +|-+-|+..+...
T Consensus 243 ~i-tTiHA~s~~~a~~ 257 (323)
T PRK13833 243 GV-TTIHSNTAMSALR 257 (323)
T ss_pred eE-EEECCCCHHHHHH
Confidence 22 4555666665443
No 355
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=86.66 E-value=5.4 Score=45.16 Aligned_cols=42 Identities=21% Similarity=0.109 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 194 QLKGVKWLISLWQNGL--N-GILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~--~-~ILademGlGKTl~ai~li~~l~~~ 235 (759)
|...+.++......+. + .|+.-+.|+|||..|..++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 5555666666555443 2 4788999999999999999888653
No 356
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.56 E-value=1.7 Score=48.06 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=36.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 259 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~ 259 (759)
.++.+|+-+.|.|||+.+.+++..... .+.=|.|.++...|.-|..+
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~~a-----tff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATESGA-----TFFNISASSLTSKYVGESEK 232 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhhcc-----eEeeccHHHhhhhccChHHH
Confidence 345689999999999988888765433 57788898888888666543
No 357
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=86.55 E-value=2.2 Score=42.82 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=25.0
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
.+-.+.|++-.+|.|||..+.++++.|+..
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 345678999999999999999998888763
No 358
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=86.31 E-value=3.7 Score=44.61 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=24.7
Q ss_pred ccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecCC
Q 004347 315 WKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTP 352 (759)
Q Consensus 315 ~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTP 352 (759)
-.+|+|||.||+- .++.-..|-.+.....+++-||-
T Consensus 105 ~tiLflDEIHRfn--K~QQD~lLp~vE~G~iilIGATT 140 (436)
T COG2256 105 RTILFLDEIHRFN--KAQQDALLPHVENGTIILIGATT 140 (436)
T ss_pred ceEEEEehhhhcC--hhhhhhhhhhhcCCeEEEEeccC
Confidence 3689999999984 34444455566666677777763
No 359
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.19 E-value=6.6 Score=42.78 Aligned_cols=42 Identities=26% Similarity=0.209 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 194 QLKGVKWLISLWQNGL---NGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~---~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
|...+..+.....++. ..|+.-+.|+|||..+-.++..+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3444444444434443 24789999999999998888887643
No 360
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.11 E-value=4.2 Score=49.98 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhh--cCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 194 QLKGVKWLISLWQ--NGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 194 Q~~gv~~l~~~~~--~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
|..-+.+++.... ...+.||.-+.|.|||..+-+++..+..
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3334777776433 3357799999999999988887776654
No 361
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=86.03 E-value=3.6 Score=41.99 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=38.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
|.-.+++.++|+|||.-+..++.....+ ..+++++.=........+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCCHHHHHHHHHHC
Confidence 3345888999999999999988766554 35788888766666676666665
No 362
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=85.99 E-value=8 Score=41.48 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~ 235 (759)
++.-+-|+|||..+..++..+...
T Consensus 30 Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 30 IIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred EeECCCCCCHHHHHHHHHHHHcCC
Confidence 799999999999999998887653
No 363
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.97 E-value=10 Score=36.59 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=24.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
.++.-..|+|||..+..++..+...+ .++++|.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEE
Confidence 36678899999999999888887663 3454444
No 364
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.97 E-value=5 Score=48.51 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=23.5
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
...|.||.-+.|+|||..+-+++..+...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34578999999999999988888777653
No 365
>PRK07004 replicative DNA helicase; Provisional
Probab=85.95 E-value=2.7 Score=47.70 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCC--
Q 004347 196 KGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGS-- 272 (759)
Q Consensus 196 ~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~-- 272 (759)
.++.-+..-+..|.-.|||.-+|.|||.-++.++.+.... ...|+++++.-..-.++...+-.-...+..- +..|.
T Consensus 201 ~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM~~~ql~~R~la~~~~v~~~~i~~g~l~ 279 (460)
T PRK07004 201 VDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLT 279 (460)
T ss_pred HHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHHHHHHhhcCCCHHHHhcCCCC
Confidence 3455554444555556999999999999999888766432 2358899988776666665553222111111 11222
Q ss_pred hhHHHHHHHhcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhc-CccEEEEcCccccc
Q 004347 273 KKERDEIRRKHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHY-NWKYLVVDEGHRLK 327 (759)
Q Consensus 273 ~~~r~~~~~~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~~-~~~~lIvDEaH~ik 327 (759)
..+...+.... ... ...++.| .|...+....+.+.... ..++||||=-|.+.
T Consensus 280 ~~e~~~~~~a~--~~l-~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 280 DEDWPKLTHAV--QKM-SEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHH--HHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 11111111100 000 1234544 24455555544443333 47899999888875
No 366
>PRK11823 DNA repair protein RadA; Provisional
Probab=85.95 E-value=4.7 Score=45.53 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=41.6
Q ss_pred HHHHHHHH-HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 196 KGVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 196 ~gv~~l~~-~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
.++..++. -+..+.-.+|.-++|.|||..++.++..+... .+++|.++-.....++.....++
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccccHHHHHHHHHHc
Confidence 44666652 11223334889999999999999988877644 35888888765566655444443
No 367
>PRK06321 replicative DNA helicase; Provisional
Probab=85.72 E-value=4.5 Score=45.97 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=71.6
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCC--h
Q 004347 197 GVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGS--K 273 (759)
Q Consensus 197 gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~--~ 273 (759)
.+.-+..-+..|.=.|||.-+|.|||.-++.++...... ...++++++.-..-.++...+......+..- +..|. .
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~ 293 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQ-NRLPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSG 293 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCH
Confidence 355555544555556999999999999998877765422 1368899988776677666543321111110 11122 1
Q ss_pred hHHHHHHHhcCCCCCCCCCCEEEe-----cHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 274 KERDEIRRKHMPRAIGPKFPIVVT-----SYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 274 ~~r~~~~~~~~~~~~~~~~~vvIt-----tye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
.+...+.... ... ...+++|- |.+.++..++......+.++||||=.|.+.
T Consensus 294 ~e~~~~~~a~--~~l-~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 294 RDFQRIVSVV--NEM-QEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHH--HHH-HcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcC
Confidence 1111111110 000 12345553 455566666555556678999999888775
No 368
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=85.69 E-value=6.9 Score=40.74 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=27.9
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
-.+++-+.|+|||.-++.++...... ..++++++-
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~ 72 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTV 72 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEe
Confidence 34889999999999999988876654 358888884
No 369
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.55 E-value=9.9 Score=41.68 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=31.6
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc----cHHHHHHHH
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS----TLSNWVNEI 257 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s----ll~~W~~E~ 257 (759)
...+++-..|+|||.++..++..+...+ .++.+|+--. .+.||..-.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~ya 257 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYA 257 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHh
Confidence 3346788899999999988887776654 4566665422 256775433
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.45 E-value=12 Score=40.26 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=25.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
.+.-..|+|||.++..++..+... .+++++++-
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~ 150 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAG 150 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEec
Confidence 466699999999998888887754 356776654
No 371
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.42 E-value=2.5 Score=45.58 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=55.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPK 291 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~ 291 (759)
+++-=-|+|||.++.-++.++..+| .++.||.+-+ --.--.+++..+.....+-.|......
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkkG-~K~~LvcaDT-FRagAfDQLkqnA~k~~iP~ygsyte~---------------- 166 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKKG-YKVALVCADT-FRAGAFDQLKQNATKARVPFYGSYTEA---------------- 166 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhcC-CceeEEeecc-cccchHHHHHHHhHhhCCeeEeccccc----------------
Confidence 4566689999999988888887765 3444554443 222333445555433333333321110
Q ss_pred CCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhh
Q 004347 292 FPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKC 331 (759)
Q Consensus 292 ~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s 331 (759)
-|-.+...--..|.+-+|++||||=+-|.+...+
T Consensus 167 ------dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~s 200 (483)
T KOG0780|consen 167 ------DPVKIASEGVDRFKKENFDVIIVDTSGRHKQEAS 200 (483)
T ss_pred ------chHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHH
Confidence 0111222222557778999999999998876444
No 372
>PRK05636 replicative DNA helicase; Provisional
Probab=85.17 E-value=4.2 Score=46.66 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=67.6
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCC--hh
Q 004347 198 VKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGS--KK 274 (759)
Q Consensus 198 v~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~--~~ 274 (759)
+.-+..-+..|.=.||+..+|.|||.-++.++.....+ ...++++++.-....++...+......+... +..|. ..
T Consensus 255 LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~ 333 (505)
T PRK05636 255 LDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIK-HNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDED 333 (505)
T ss_pred HhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHH
Confidence 44443333444445899999999999988887765432 1358888888666666554442221111110 11221 11
Q ss_pred HHHHHHHhcCCCCCCCCCCEEEe-----cHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 275 ERDEIRRKHMPRAIGPKFPIVVT-----SYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 275 ~r~~~~~~~~~~~~~~~~~vvIt-----tye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
+...+.... . .....++.|. |...+...++.+....+.++||||=.|.+.
T Consensus 334 e~~~~~~a~--~-~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 334 AWEKLVQRL--G-KIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHH--H-HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcC
Confidence 111111110 0 0123345552 445566555554455678999999999885
No 373
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.98 E-value=6.4 Score=43.27 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 194 QLKGVKWLISLWQNGL---NGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~---~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
|...+..+.....++. +.++.-+.|+|||..+-+++..+...
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~ 66 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQP 66 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444555555444442 45789999999999888887776553
No 374
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.58 E-value=5.4 Score=45.20 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=23.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
..|.-.+|.|||.++.-++..+.......++.+|+
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 35777899999999888887765432222444443
No 375
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=84.57 E-value=3.3 Score=47.62 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=47.5
Q ss_pred ccchhHHHHHHHHHHHhh--------cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 189 KLKSYQLKGVKWLISLWQ--------NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~--------~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
..++...+++.|.+.... ...+.||+-..|+|||+.|-++... ...+++-|-...+++.|.-|..+-
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~-----~~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE-----SRSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh-----CCCeEEEeeCHHHhccccchHHHH
Confidence 456677778888776432 3446799999999999888777653 234666665558888888777654
No 376
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=84.55 E-value=15 Score=39.64 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHHh----hcCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 191 KSYQLKGVKWLISLW----QNGLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 191 rpyQ~~gv~~l~~~~----~~~~~~ILademGlGKTl~ai~li~~l 232 (759)
++...+.+.-++... ....+.++.-+.|+|||..+-+++..+
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 30 QEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 344554454343322 113457999999999999888777655
No 377
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=84.55 E-value=3.8 Score=49.36 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=22.2
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
...|.||.-+.|+|||..+-++...+..
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3567899999999999988777765544
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=84.23 E-value=15 Score=38.52 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=25.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
.++.-..|.|||.++..++.++...| +++++|+-
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g--~~V~li~~ 108 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQG--KSVLLAAG 108 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEeC
Confidence 35667899999999998888876553 46776664
No 379
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=84.19 E-value=3.1 Score=43.20 Aligned_cols=59 Identities=29% Similarity=0.327 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHH
Q 004347 194 QLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWV 254 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~ 254 (759)
+...+.-+...+.++.|.+|.-.+|.|||..++|+...+...| .+++++.-+.++.++.
T Consensus 91 ~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g--~sv~f~~~~el~~~Lk 149 (254)
T COG1484 91 ALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAG--ISVLFITAPDLLSKLK 149 (254)
T ss_pred HHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEEHHHHHHHHH
Confidence 3333444444445788899999999999999999999998543 4566665444444443
No 380
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=84.03 E-value=9.3 Score=42.78 Aligned_cols=36 Identities=22% Similarity=0.100 Sum_probs=25.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
-.+++-..|+|||.++.-++.++..... .++++|+=
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~ 136 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQG-KKVLLVAC 136 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCC-CeEEEEec
Confidence 3578889999999999999888763222 35555544
No 381
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.00 E-value=2 Score=46.07 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=35.1
Q ss_pred HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 204 LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 204 ~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
++....|.+|..+.|+|||+.|-++.... ..+++=|.=..+.+.|.-|-.+.
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-----ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 123 LLRPPKGILLYGPPGTGKTMLAKAIAKEA-----GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred cccCCccceecCCCCchHHHHHHHHHHHc-----CCCcceeeccccchhhHHHHHHH
Confidence 34567888999999999998877765432 23455455455666787665544
No 382
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=83.85 E-value=4.9 Score=42.45 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=27.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
+...+++-.+|+|||.++..++.++...+...++.+|+-
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 344567788999999999999888876422235665554
No 383
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.72 E-value=7.8 Score=43.19 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=32.7
Q ss_pred CccEEEEcCcccccChhhHHHHHHhcC-----CCCcEEEEecCCCCCCHHHHHhhhhhcc
Q 004347 314 NWKYLVVDEGHRLKNPKCKLLKELKYI-----PIGNKLLLTGTPLQNNLAELWSLLHFIL 368 (759)
Q Consensus 314 ~~~~lIvDEaH~ikn~~s~~~~~l~~l-----~~~~rllLTgTPl~n~~~el~sll~fl~ 368 (759)
++++++||.+=+..+ ...+...+..+ +....|+|+||--.+.+.++..-+..+.
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~ 327 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHG 327 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 568999998754432 22334444443 2234588999977777777666555443
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=83.67 E-value=17 Score=40.61 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=25.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
..++-..|+|||.++..++.++...| .++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcC
Confidence 35777899999999998888877654 36666655
No 385
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=83.66 E-value=5.1 Score=47.88 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=46.0
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC-C-CCCCeEEEECCc-cHHHHHHHHHHhC
Q 004347 190 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-G-LHGPYLVIAPLS-TLSNWVNEISRFV 261 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~-~-~~~~~LIV~P~s-ll~~W~~E~~~~~ 261 (759)
|.|-|..+|.+- ...+++-...|+|||.+.+.-+.++... + ....+|+|+.+. ...+..+.+.+..
T Consensus 2 Ln~~Q~~av~~~------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEYV------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 678898887643 4466777779999999999999999864 3 234577777644 4445555565544
No 386
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=83.62 E-value=1.5 Score=42.81 Aligned_cols=48 Identities=31% Similarity=0.372 Sum_probs=33.8
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 259 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~ 259 (759)
.++.|.+|.-.+|.|||..|.+++..+...| .+++++. ...+..+++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g--~~v~f~~----~~~L~~~l~~ 92 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG--YSVLFIT----ASDLLDELKQ 92 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEE----HHHHHHHHHC
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC--cceeEee----cCceeccccc
Confidence 4577889999999999999999999888854 3566654 3455666653
No 387
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=83.53 E-value=8.2 Score=42.56 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=21.6
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
..|..+.|..+.|+|||..+-.++..+...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 346667888889999998766665555443
No 388
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=83.45 E-value=3.3 Score=40.11 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHH--hhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc---cHHHHHHHHHHhC
Q 004347 192 SYQLKGVKWLISL--WQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS---TLSNWVNEISRFV 261 (759)
Q Consensus 192 pyQ~~gv~~l~~~--~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s---ll~~W~~E~~~~~ 261 (759)
..|++-+.-++.. ...+...+|.-+.|+|||...-.++..+...+.. .+-+-|... -...|..-+...+
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY-VISINCDDSERNPYSPFRSALRQLI 79 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT---EEEEEEETTTS-HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE-EEEEEEeccccchhhHHHHHHHHHH
Confidence 4454444444421 1334557899999999999988888877776322 222223333 2345644445444
No 389
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=83.37 E-value=2.6 Score=44.95 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=33.1
Q ss_pred HHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 199 KWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 199 ~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
.+|..+...+.+.+++-.||+|||..+-+++..+.......++++|=
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE 169 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE 169 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence 34444456678899999999999998888887776543344555443
No 390
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=83.15 E-value=3.1 Score=44.75 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=38.0
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s 248 (759)
+.+.+.|.+.+..+ ...+.+.+++-.+|+|||...-+++..+.......++++|-...
T Consensus 131 g~~~~~~~~~L~~~---v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~ 188 (319)
T PRK13894 131 GIMTAAQREAIIAA---VRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTG 188 (319)
T ss_pred CCCCHHHHHHHHHH---HHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCC
Confidence 34555666554444 35688899999999999987777777664433344555555544
No 391
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=83.11 E-value=8.7 Score=47.92 Aligned_cols=128 Identities=17% Similarity=0.123 Sum_probs=74.7
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceE
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSA 266 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~ 266 (759)
+..|.+-|..++..+. ..+.-++|--.-|+|||.+.-++...+...| .+++.++|+.--..= +..-. ++..
T Consensus 379 ~~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G--~~V~g~ApTgkAA~~---L~e~~-Gi~a 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAAG--YRVVGGALAGKAAEG---LEKEA-GIQS 449 (1102)
T ss_pred CCCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEcCcHHHHHH---HHHhh-CCCe
Confidence 3579999999998764 2233457777799999988776665554443 578888997644322 22211 1111
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH---HHhhhhcCccEEEEcCcccccChhhHHHHHHhcC-CC
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA---RKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI-PI 342 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~---~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l-~~ 342 (759)
. |...+.... ...+ ..-++||||||..+-.. .+.+.+... ..
T Consensus 450 ~------------------------------TIas~ll~~~~~~~~l--~~~~vlVIDEAsMv~~~--~m~~Ll~~~~~~ 495 (1102)
T PRK13826 450 R------------------------------TLSSWELRWNQGRDQL--DNKTVFVLDEAGMVASR--QMALFVEAVTRA 495 (1102)
T ss_pred e------------------------------eHHHHHhhhccCccCC--CCCcEEEEECcccCCHH--HHHHHHHHHHhc
Confidence 0 111100000 0011 12379999999988432 233444444 36
Q ss_pred CcEEEEecCCCCCCH
Q 004347 343 GNKLLLTGTPLQNNL 357 (759)
Q Consensus 343 ~~rllLTgTPl~n~~ 357 (759)
..+++|.|=|-|--.
T Consensus 496 garvVLVGD~~QL~~ 510 (1102)
T PRK13826 496 GAKLVLVGDPEQLQP 510 (1102)
T ss_pred CCEEEEECCHHHcCC
Confidence 789999998876543
No 392
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=82.86 E-value=8.6 Score=42.83 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=79.5
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCChhHH
Q 004347 198 VKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGSKKER 276 (759)
Q Consensus 198 v~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~~~~r 276 (759)
+.-+..-|+++.-.|+|.=+|.|||--|+-++..+... ...|+.|..--..-.||..-+......+... +-.|...+.
T Consensus 186 LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~-~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~kirtg~l~~~ 264 (435)
T COG0305 186 LDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAAD-GRKPVAIFSLEMSEEQLVMRLLSSESGIESSKLRTGRLSDD 264 (435)
T ss_pred hHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHh-cCCCeEEEEccCCHHHHHHHhhccccccchhccccccccHH
Confidence 45555555666667999999999999999988877763 4467888888888889988775544333221 222321111
Q ss_pred HHHHHhcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhcCccEEEEcCcccccC
Q 004347 277 DEIRRKHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 277 ~~~~~~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn 328 (759)
. +.+...........++.| .|+..++...+..-...+.+++++|=-|-+..
T Consensus 265 d-~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~ 320 (435)
T COG0305 265 E-WERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTG 320 (435)
T ss_pred H-HHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeecc
Confidence 1 111100000111233444 34555666666666777799999999998864
No 393
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=82.84 E-value=23 Score=39.73 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=32.9
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH-HHHHHHHh
Q 004347 217 MGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN-WVNEISRF 260 (759)
Q Consensus 217 mGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~-W~~E~~~~ 260 (759)
-|+|||..-..=+++|...++..+++|-|=+.++.+ ..+-+.+|
T Consensus 185 AGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F 229 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEF 229 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHH
Confidence 599999887777788888888899999998776644 33334444
No 394
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=82.73 E-value=10 Score=40.89 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=33.9
Q ss_pred cchhHHHHHHHHHHHhhcCCC-eEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 190 LKSYQLKGVKWLISLWQNGLN-GILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~-~ILademGlGKTl~ai~li~~l~~ 234 (759)
++|.|.....-+...+.+-.. -|+.-+.|+|||..+..++..+.-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcC
Confidence 467777777666665443334 368899999999999999888875
No 395
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=82.64 E-value=1.6 Score=45.36 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=62.4
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH-HHHHHHHhCCCceEE-EEeCC--hhHHHHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN-WVNEISRFVPSVSAI-IYHGS--KKERDEIRR 281 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~-W~~E~~~~~p~~~~~-~~~g~--~~~r~~~~~ 281 (759)
..|.=.+||..+|.|||.-++.++..+...+ ..++++++.-..-.+ +.+-+.... .+..- +..|. ..+...+..
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm~~~~l~~R~la~~s-~v~~~~i~~g~l~~~e~~~~~~ 94 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEMSEEELAARLLARLS-GVPYNKIRSGDLSDEEFERLQA 94 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS-HHHHHHHHHHHHH-TSTHHHHHCCGCHHHHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhh-cchhhhhhccccCHHHHHHHHH
Confidence 3344469999999999999999998887753 268999998654444 333333332 11100 11121 111111111
Q ss_pred hcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhh-cCccEEEEcCcccccC
Q 004347 282 KHMPRAIGPKFPIVV-----TSYEVALSDARKYLRH-YNWKYLVVDEGHRLKN 328 (759)
Q Consensus 282 ~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~-~~~~~lIvDEaH~ikn 328 (759)
.. ... ....++| .|.+.+...++.+-.. .+.++||||=.|.+..
T Consensus 95 ~~--~~l-~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 95 AA--EKL-SDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HH--HHH-HTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred HH--HHH-hhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 10 000 1222333 2444455444333333 6788999999998875
No 396
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=82.60 E-value=10 Score=41.58 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=33.6
Q ss_pred ccchhHHHHHHHHHHHhh---cCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 189 KLKSYQLKGVKWLISLWQ---NGLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~---~~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
.-|+-|...+...+.-+- .+.|.++.-.+|+|||.++--++..+...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 456777776655444322 23458999999999999998888888764
No 397
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=82.56 E-value=11 Score=44.89 Aligned_cols=135 Identities=20% Similarity=0.104 Sum_probs=69.6
Q ss_pred HhhcCCCeEEEcCCCCcHHHHHHHHHHH-HHhCCCC--CCeEEEECCccHHHH-----HHHHHHhCCCceEEEEeCChhH
Q 004347 204 LWQNGLNGILADQMGLGKTIQTIAFLAH-LKGNGLH--GPYLVIAPLSTLSNW-----VNEISRFVPSVSAIIYHGSKKE 275 (759)
Q Consensus 204 ~~~~~~~~ILademGlGKTl~ai~li~~-l~~~~~~--~~~LIV~P~sll~~W-----~~E~~~~~p~~~~~~~~g~~~~ 275 (759)
....+.-.|+--++|+|||.|...+|.. +...+.. .-..|.-|.....+. .+|=..-. ...+.|.---
T Consensus 389 ~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~--g~tvgy~vRf-- 464 (1282)
T KOG0921|consen 389 AVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEV--GETCGYNVRF-- 464 (1282)
T ss_pred HHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhh--cccccccccc--
Confidence 3345666788899999999997766543 3333222 222333333333332 22211111 1122221100
Q ss_pred HHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCC----cEEEEecC
Q 004347 276 RDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIG----NKLLLTGT 351 (759)
Q Consensus 276 r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~----~rllLTgT 351 (759)
.. ....+..-+..+|-+.+.+....-+. ....+|+||.|..--..--+...++.+... +.+++++|
T Consensus 465 -----~S---a~prpyg~i~fctvgvllr~~e~glr--g~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsat 534 (1282)
T KOG0921|consen 465 -----DS---ATPRPYGSIMFCTVGVLLRMMENGLR--GISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSAT 534 (1282)
T ss_pred -----cc---cccccccceeeeccchhhhhhhhccc--ccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcc
Confidence 00 01112334677888877776544443 447899999997654344444444544333 44788888
Q ss_pred C
Q 004347 352 P 352 (759)
Q Consensus 352 P 352 (759)
-
T Consensus 535 I 535 (1282)
T KOG0921|consen 535 I 535 (1282)
T ss_pred c
Confidence 4
No 398
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=82.29 E-value=11 Score=37.00 Aligned_cols=54 Identities=22% Similarity=0.235 Sum_probs=37.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhC--------CCCCCeEEEECCccHHHHHHHHHHhC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGN--------GLHGPYLVIAPLSTLSNWVNEISRFV 261 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~--------~~~~~~LIV~P~sll~~W~~E~~~~~ 261 (759)
|.-++++.+.|+|||..++.++..+... ...+++|+|..-....++.+-+....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 4457899999999999999998887752 14568999988777667766666554
No 399
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=82.28 E-value=4.3 Score=41.12 Aligned_cols=40 Identities=30% Similarity=0.534 Sum_probs=29.7
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCeEEE-E-CCccHHHHHHHHH
Q 004347 217 MGLGKTIQTIAFLAHLKGNGLHGPYLVI-A-PLSTLSNWVNEIS 258 (759)
Q Consensus 217 mGlGKTl~ai~li~~l~~~~~~~~~LIV-~-P~sll~~W~~E~~ 258 (759)
=|.|||..+++++..+..+| +++.+| | |..-+..|.+-..
T Consensus 11 GGaGKTT~~~~LAs~la~~G--~~V~lIDaDpn~pl~~W~~~a~ 52 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARG--ARVALIDADPNQPLAKWAENAQ 52 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCC--CeEEEEeCCCCCcHHHHHHhcc
Confidence 48999999999999998876 355444 3 5667889966543
No 400
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.01 E-value=5.3 Score=43.99 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=59.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGP 290 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~ 290 (759)
.+++-=-|+|||.+|.-++.++..+ ..++|+||--.--+-=.++++...-...+-+|.... ..+
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~--~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~-~~~------------- 166 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKK--GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGT-EKD------------- 166 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHc--CCceEEEecccCChHHHHHHHHHHHHcCCceecCCC-CCC-------------
Confidence 3566668999999999999999883 345555554333333344444443333333333211 000
Q ss_pred CCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC
Q 004347 291 KFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI 340 (759)
Q Consensus 291 ~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l 340 (759)
..+++...+ ..+....+|+||||=|-|+.- ...+...+..+
T Consensus 167 -------Pv~Iak~al-~~ak~~~~DvvIvDTAGRl~i-de~Lm~El~~I 207 (451)
T COG0541 167 -------PVEIAKAAL-EKAKEEGYDVVIVDTAGRLHI-DEELMDELKEI 207 (451)
T ss_pred -------HHHHHHHHH-HHHHHcCCCEEEEeCCCcccc-cHHHHHHHHHH
Confidence 012233332 556666789999999988764 44444444443
No 401
>PRK07773 replicative DNA helicase; Validated
Probab=81.70 E-value=2.6 Score=52.06 Aligned_cols=131 Identities=14% Similarity=0.094 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCC
Q 004347 194 QLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGS 272 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~ 272 (759)
-..++..+..-+..|.-.|||..+|.|||.-++.++...... ...++++++--....+....+......+..- +..|.
T Consensus 203 G~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~-~~~~V~~fSlEms~~ql~~R~~s~~~~i~~~~i~~g~ 281 (886)
T PRK07773 203 GFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIR-HRLAVAIFSLEMSKEQLVMRLLSAEAKIKLSDMRSGR 281 (886)
T ss_pred ChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCC
Confidence 345566555444555557999999999999999988876543 2358889887666666655554432222110 11121
Q ss_pred hh--HHHHHHHhcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhcCccEEEEcCcccccC
Q 004347 273 KK--ERDEIRRKHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 273 ~~--~r~~~~~~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn 328 (759)
-. +...+.... . .....++.| .|.+.+...++.+....+.++||||=.+.+..
T Consensus 282 l~~~~~~~~~~a~--~-~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~ 341 (886)
T PRK07773 282 MSDDDWTRLARAM--G-EISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTS 341 (886)
T ss_pred CCHHHHHHHHHHH--H-HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCC
Confidence 11 111111000 0 001234444 24556666655555566789999999888863
No 402
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.45 E-value=11 Score=41.90 Aligned_cols=125 Identities=11% Similarity=0.106 Sum_probs=64.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHH-hCCCCCCeEEEECCc--cHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLS--TLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRA 287 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~-~~~~~~~~LIV~P~s--ll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~ 287 (759)
.++.-..|+|||.++.-++..+. ..| .++++++=-. .-..| .+..|....
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G--~~V~Lit~Dt~R~aA~e--QLk~yAe~l----------------------- 278 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMG--KSVSLYTTDNYRIAAIE--QLKRYADTM----------------------- 278 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEecccchhhhHHH--HHHHHHHhc-----------------------
Confidence 45778899999999998887653 332 3454444322 22333 233332111
Q ss_pred CCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhh---HHHHHHhcC----CCCcEEEEecCCCCCCHHHH
Q 004347 288 IGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKC---KLLKELKYI----PIGNKLLLTGTPLQNNLAEL 360 (759)
Q Consensus 288 ~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s---~~~~~l~~l----~~~~rllLTgTPl~n~~~el 360 (759)
..+++. ...+ .+....+...++++||||=+-+.-.... .+...+... +....|.|+||--++.+.+.
T Consensus 279 ---gvp~~~--~~~~-~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~ 352 (432)
T PRK12724 279 ---GMPFYP--VKDI-KKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV 352 (432)
T ss_pred ---CCCeee--hHHH-HHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH
Confidence 111111 1111 1222334445789999998766532221 122222222 23456888999776666666
Q ss_pred Hhhhhhcc
Q 004347 361 WSLLHFIL 368 (759)
Q Consensus 361 ~sll~fl~ 368 (759)
...+..+.
T Consensus 353 ~~~f~~~~ 360 (432)
T PRK12724 353 LKAYESLN 360 (432)
T ss_pred HHHhcCCC
Confidence 55444443
No 403
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=81.34 E-value=2.6 Score=47.98 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=42.3
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC----CCCCeEEEECCccHHHHHH
Q 004347 190 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG----LHGPYLVIAPLSTLSNWVN 255 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~----~~~~~LIV~P~sll~~W~~ 255 (759)
+-+-|-+.++.- .+.-.|+--..|+|||..|+--+++|.... ..+++||+.|+.+......
T Consensus 213 IQkEQneIIR~e-----k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 213 IQKEQNEIIRFE-----KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred hhHhHHHHHhcc-----CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 345565554432 234456777899999999999889888632 2467999999988655443
No 404
>PRK04328 hypothetical protein; Provisional
Probab=81.11 E-value=14 Score=38.09 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=34.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
|...+++-+.|+|||..++.++..-...| .+.++|+=.....+-.+.+..+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~g--e~~lyis~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMG--EPGVYVALEEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEeeCCHHHHHHHHHHc
Confidence 44457899999999999999888765553 4777777544444444444433
No 405
>PRK10689 transcription-repair coupling factor; Provisional
Probab=81.06 E-value=11 Score=47.68 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=64.8
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHh----cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNE----KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFL 587 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 587 (759)
.+||-.+.....-.....|.+++|-+..+..+..+...|.. .++.+..++|..+..++.+++.....+ .+.|++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g--~~dIVV 708 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG--KIDILI 708 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC--CCCEEE
Confidence 46777654433333345688999999998877666665553 356788899999999999999888763 444544
Q ss_pred EecccccCCCCCCCCCEEEE
Q 004347 588 LSTRAGGLGINLTAADTCIL 607 (759)
Q Consensus 588 lsT~agg~GINL~~a~~VI~ 607 (759)
.+......++++.....+|+
T Consensus 709 gTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 709 GTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred ECHHHHhCCCCHhhCCEEEE
Confidence 44445555667777777765
No 406
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=80.97 E-value=13 Score=37.75 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=35.4
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 259 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~ 259 (759)
.|...+++-+.|+|||..+..++......+ .++++++-.....+..+....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g--~~~~~is~e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDG--DPVIYVTTEESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcC--CeEEEEEccCCHHHHHHHHHH
Confidence 355568899999999999988876655443 477888875555555444433
No 407
>PRK12377 putative replication protein; Provisional
Probab=80.85 E-value=11 Score=38.87 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=30.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHH
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLS 251 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~ 251 (759)
.+.+|.-++|+|||..+.+++..+...| .+++++.-..++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g--~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG--RSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC--CCeEEEEHHHHHH
Confidence 4568889999999999999999998764 3455554444444
No 408
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.66 E-value=18 Score=42.69 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=26.1
Q ss_pred CccEEEEcCcccccCh-hhHHHHHHhcCCCCcEEEEecCC
Q 004347 314 NWKYLVVDEGHRLKNP-KCKLLKELKYIPIGNKLLLTGTP 352 (759)
Q Consensus 314 ~~~~lIvDEaH~ikn~-~s~~~~~l~~l~~~~rllLTgTP 352 (759)
+++++||||+|++... ...+.+.+...+...+++|+.|-
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 5789999999999542 23344555555566667776663
No 409
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=80.62 E-value=1.4 Score=42.76 Aligned_cols=121 Identities=22% Similarity=0.171 Sum_probs=45.0
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhC-CCceEEEEeCChhHHHHHHHhcCCCCCCCC
Q 004347 213 LADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFV-PSVSAIIYHGSKKERDEIRRKHMPRAIGPK 291 (759)
Q Consensus 213 LademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~-p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~ 291 (759)
|-.+=|-|||-..-.+++.+...+. .+++|.+|... |- ..+-+|. ..+..+-|......+.. .........
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~-~~I~vtAP~~~--~~-~~lf~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~ 73 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGK-IRILVTAPSPE--NV-QTLFEFAEKGLKALGYKEEKKKRIG----QIIKLRFNK 73 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS----S--HHHHHCC------------------------------C
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcC-ceEEEecCCHH--HH-HHHHHHHHhhccccccccccccccc----ccccccccc
Confidence 3344799999765555555554433 57899999542 11 1222222 11222222111000000 000001123
Q ss_pred CCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecCC
Q 004347 292 FPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTP 352 (759)
Q Consensus 292 ~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTP 352 (759)
..|-...++.+.. .....|+||||||=.|- -..+.+. +....++++|.|-
T Consensus 74 ~~i~f~~Pd~l~~------~~~~~DlliVDEAAaIp--~p~L~~l---l~~~~~vv~stTi 123 (177)
T PF05127_consen 74 QRIEFVAPDELLA------EKPQADLLIVDEAAAIP--LPLLKQL---LRRFPRVVFSTTI 123 (177)
T ss_dssp CC--B--HHHHCC------T----SCEEECTGGGS---HHHHHHH---HCCSSEEEEEEEB
T ss_pred ceEEEECCHHHHh------CcCCCCEEEEechhcCC--HHHHHHH---HhhCCEEEEEeec
Confidence 3444444443211 12246999999997763 1222222 4466788888884
No 410
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=80.54 E-value=4.7 Score=40.92 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=26.9
Q ss_pred cCccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecCCCCCC
Q 004347 313 YNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNN 356 (759)
Q Consensus 313 ~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTPl~n~ 356 (759)
...+++||||++.+-...-.+ +........+.|-|=|.|-.
T Consensus 61 ~~~~~liiDE~~~~~~g~l~~---l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPGYLLL---LLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred CcCCEEEEeccccCChHHHHH---HHhhccCcceEEEECchhcc
Confidence 357999999999875322222 33444445678889998764
No 411
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=80.30 E-value=7.8 Score=42.84 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=27.7
Q ss_pred CccEEEEcCcccccChh---hHHHHHHhcCC-CCcEEEEec--CCCC
Q 004347 314 NWKYLVVDEGHRLKNPK---CKLLKELKYIP-IGNKLLLTG--TPLQ 354 (759)
Q Consensus 314 ~~~~lIvDEaH~ikn~~---s~~~~~l~~l~-~~~rllLTg--TPl~ 354 (759)
..++++||-.|.+.+.. -.++..+..+. ....|+||+ +|-+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 56899999999987652 33444444543 344899999 6643
No 412
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=79.71 E-value=11 Score=46.39 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=68.3
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHh----cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNE----KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFL 587 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 587 (759)
.|||-.+....+-.....|.+++|.++.+..+......+.. .++++..++|.++..++.++++.+..+ .+.|++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g--~~dIVI 559 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASG--KIDILI 559 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcC--CceEEE
Confidence 47888765544444445688999999998877766665543 477889999999999999999998864 445544
Q ss_pred EecccccCCCCCCCCCEEEEe
Q 004347 588 LSTRAGGLGINLTAADTCILY 608 (759)
Q Consensus 588 lsT~agg~GINL~~a~~VI~~ 608 (759)
.+.......+.+.....||+=
T Consensus 560 GTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred chHHHhhCCCCcccCCEEEee
Confidence 444455566778888877763
No 413
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=79.70 E-value=26 Score=40.97 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=64.9
Q ss_pred ccHHHH-HHHHHHHHhhCCCcEEEEccch----hHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q 004347 513 CGKFRL-LDRLLARLFARNHKVLVFSQWT----KILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFL 587 (759)
Q Consensus 513 s~K~~~-L~~lL~~l~~~~~kvLIFsq~~----~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 587 (759)
|||-.+ +..++. ....|..+.+-...- .+.+-+..+|...|+.+..++|+++...|.+++.+-.+++-+ + +
T Consensus 294 SGKTvVA~laml~-ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~--i-v 369 (677)
T COG1200 294 SGKTVVALLAMLA-AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID--I-V 369 (677)
T ss_pred CCHHHHHHHHHHH-HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC--E-E
Confidence 666543 333333 335677777776542 345667788888899999999999999999999999875444 4 6
Q ss_pred Eecccc-cCCCCCCCCCEEEE
Q 004347 588 LSTRAG-GLGINLTAADTCIL 607 (759)
Q Consensus 588 lsT~ag-g~GINL~~a~~VI~ 607 (759)
|.|-|. -..+++++.-.||+
T Consensus 370 VGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 370 VGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EEcchhhhcceeecceeEEEE
Confidence 666655 66777777777765
No 414
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=79.65 E-value=4.2 Score=45.08 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=20.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
..+.+|.-+.|+|||..|-+++..+
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh
Confidence 4567999999999999888776654
No 415
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=79.56 E-value=9.8 Score=41.03 Aligned_cols=122 Identities=19% Similarity=0.276 Sum_probs=62.9
Q ss_pred CCcHHHHHHHHHHHHHhCCC---------C----CCeEEEECCccHHHHHHH---HHHhCCCceEEEEeCChhHHH--HH
Q 004347 218 GLGKTIQTIAFLAHLKGNGL---------H----GPYLVIAPLSTLSNWVNE---ISRFVPSVSAIIYHGSKKERD--EI 279 (759)
Q Consensus 218 GlGKTl~ai~li~~l~~~~~---------~----~~~LIV~P~sll~~W~~E---~~~~~p~~~~~~~~g~~~~r~--~~ 279 (759)
|+|||=.++.++..|..+|. . +..++|.|.+.-..--+| +.+.+| ..+++ |....+. .+
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~-~~V~V--~~dR~~~~~~~ 123 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP-VPVIV--GPDRVAAARAA 123 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC-CcEEE--eCcHHHHHHHH
Confidence 99999999999999987642 1 137888887755444444 455565 33333 2222111 11
Q ss_pred HHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC----hhhHHHHHHhcCCCCcEEEEecCCCC
Q 004347 280 RRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN----PKCKLLKELKYIPIGNKLLLTGTPLQ 354 (759)
Q Consensus 280 ~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn----~~s~~~~~l~~l~~~~rllLTgTPl~ 354 (759)
... ...+|+|.-=.+ .+.--...+++|++|-.+-+.| +...+-.-+..++....+++|+.+..
T Consensus 124 ~~~-------~~~dviilDDGf-----Qh~~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~~~~~~~ 190 (326)
T PF02606_consen 124 LKE-------FPADVIILDDGF-----QHRRLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSALKRADAVIVTGCDAS 190 (326)
T ss_pred HHH-------CCCCEEEEcCCc-----ccccccCCcEEEEEeCCCCCcCCccCCCCcccCChhHhCcccEEEEcCCCcc
Confidence 111 125566552211 0111122457777776555544 22223333344444455666766643
No 416
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=79.53 E-value=12 Score=40.16 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=36.9
Q ss_pred HHHHHHH--HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH
Q 004347 197 GVKWLIS--LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN 252 (759)
Q Consensus 197 gv~~l~~--~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~ 252 (759)
++..++. -+..|.-..++-+.|+|||.-++.++...... .+++++|........
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP 97 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHH
Confidence 3444542 22334445788999999999999988887665 367888877665544
No 417
>CHL00176 ftsH cell division protein; Validated
Probab=79.44 E-value=7.8 Score=45.76 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=19.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~ 231 (759)
..+.+|.-++|+|||..+=+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999988777654
No 418
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=79.10 E-value=11 Score=40.42 Aligned_cols=42 Identities=19% Similarity=0.102 Sum_probs=32.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLS 251 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~ 251 (759)
|.-..++-+.|+|||..++.++...... .+++++|.+...+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~ 96 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALD 96 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHH
Confidence 3334788899999999999988877665 36888888866554
No 419
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=79.08 E-value=6.6 Score=44.45 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=43.1
Q ss_pred HHHHHHHHH-HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 195 LKGVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 195 ~~gv~~l~~-~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
..++..++. -+..|.-.+|+-++|.|||..++.++..+...+ +++|.|.......++.....++
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCCHHHHHHHHHHc
Confidence 345555552 112233348999999999999999888776653 5889998866666665544443
No 420
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=78.88 E-value=16 Score=34.96 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=62.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC--Cc-cHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP--LS-TLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAI 288 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P--~s-ll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~ 288 (759)
+..-.-|.|||..++.++..+...| .++|+|== .. .+. |. |. +..
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g--~~vllvD~D~q~~~~~-~~-----~~---------~~~--------------- 51 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLG--YKVGLLDADIYGPSIP-KM-----WR---------GPM--------------- 51 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcC--CcEEEEeCCCCCCCch-HH-----Hh---------Ccc---------------
Confidence 4556679999999999998887754 46776621 11 111 11 00 000
Q ss_pred CCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhcc
Q 004347 289 GPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFIL 368 (759)
Q Consensus 289 ~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~ 368 (759)
....+.... ..+....+++||||=...+-+. .. .+..+.....+++..+|-...+.+...++.++.
T Consensus 52 ---------~~~~l~~~~-~~~~~~~yD~VIiD~pp~~~~~---~~-~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~ 117 (169)
T cd02037 52 ---------KMGAIKQFL-TDVDWGELDYLVIDMPPGTGDE---HL-TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFK 117 (169)
T ss_pred ---------hHHHHHHHH-HHhhcCCCCEEEEeCCCCCcHH---HH-HHHhccCCCeEEEEECCchhhHHHHHHHHHHHH
Confidence 001111111 1122246899999988765321 11 122223445666777888888888887777764
Q ss_pred C
Q 004347 369 P 369 (759)
Q Consensus 369 p 369 (759)
.
T Consensus 118 ~ 118 (169)
T cd02037 118 K 118 (169)
T ss_pred h
Confidence 3
No 421
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=78.82 E-value=5.6 Score=41.50 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 192 SYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 192 pyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
|+....+..++.....+...+|..++|+|||..|-++...+ ..|++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l-----g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR-----DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEEe
Confidence 55556666666666778899999999999999988876533 34776664
No 422
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=78.80 E-value=3 Score=49.84 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=46.4
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC-CC-CCCeEEEECCccH-HHHHHHHHHh
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GL-HGPYLVIAPLSTL-SNWVNEISRF 260 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~-~~-~~~~LIV~P~sll-~~W~~E~~~~ 260 (759)
.|-|-|.++|.+. ...+++....|+|||.+.+.-+++|... +. ...+|+|+.+.-- ......+.+.
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 3778899988653 3456666779999999999999999864 42 3468999986543 3344444443
No 423
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=78.68 E-value=4.6 Score=41.74 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=17.6
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~ 231 (759)
..|..+++.-+.|.|||..+-.++..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34666777788999999654444433
No 424
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.56 E-value=12 Score=44.69 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=63.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc----cHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS----TLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPR 286 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s----ll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~ 286 (759)
..|.-.+|.|||.++.-++..+.......++.+|+-.. .+.||..--.... +.
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~g--vp--------------------- 244 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILG--VP--------------------- 244 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCC--CC---------------------
Confidence 46888999999988877776664322223454544322 2344432221111 11
Q ss_pred CCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC-----CCCcEEEEecCCCCCCHHHHH
Q 004347 287 AIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI-----PIGNKLLLTGTPLQNNLAELW 361 (759)
Q Consensus 287 ~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l-----~~~~rllLTgTPl~n~~~el~ 361 (759)
-.++.++..+...+ ..+. +.++||||=+=+.-+.. .+...+..+ +....+.|++|.-...+.++.
T Consensus 245 ------v~~~~~~~~l~~al-~~~~--~~D~VLIDTAGRs~~d~-~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~ 314 (767)
T PRK14723 245 ------VHAVKDAADLRFAL-AALG--DKHLVLIDTVGMSQRDR-NVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV 314 (767)
T ss_pred ------ccccCCHHHHHHHH-HHhc--CCCEEEEeCCCCCccCH-HHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH
Confidence 11222444443332 2232 45899999888765322 244444433 233457888886555555555
Q ss_pred hhhh
Q 004347 362 SLLH 365 (759)
Q Consensus 362 sll~ 365 (759)
.-++
T Consensus 315 ~~f~ 318 (767)
T PRK14723 315 HAYR 318 (767)
T ss_pred HHHh
Confidence 4443
No 425
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=78.38 E-value=7.4 Score=46.66 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=18.7
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHH
Q 004347 209 LNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~ 231 (759)
.+.||.-+.|+|||..+-++...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999887776654
No 426
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=78.38 E-value=8.3 Score=42.34 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=20.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
..+.+|.-+.|+|||..+-+++..+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4567999999999998887776654
No 427
>PRK12608 transcription termination factor Rho; Provisional
Probab=78.32 E-value=8.2 Score=42.15 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 192 SYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 192 pyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
+.-..++..+.-. ..|.+++|..+.|+|||..+..++..+...
T Consensus 118 ~~~~RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 118 DLSMRVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred chhHhhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3334455555432 457778899999999999888888877664
No 428
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=78.21 E-value=4.3 Score=45.07 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=25.7
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s 248 (759)
.+.+.+|.-+.|+|||..+-+++..+ ..+++.+.+..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l-----~~~fi~i~~s~ 214 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT-----TATFIRVVGSE 214 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHH
Confidence 35678999999999999877766543 23555555433
No 429
>CHL00095 clpC Clp protease ATP binding subunit
Probab=78.06 E-value=1.4e+02 Score=36.62 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhhc----------CCC-eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 193 YQLKGVKWLISLWQN----------GLN-GILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 193 yQ~~gv~~l~~~~~~----------~~~-~ILademGlGKTl~ai~li~~l~~~ 235 (759)
-|-.++.-+...... ..+ -+++-++|+|||..|-+++..+...
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 477777666543321 112 4799999999999999888777543
No 430
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=77.01 E-value=14 Score=40.69 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=21.2
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
-.|..++|..+.|.|||..+-.+...+...
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 346667777889999997776666555543
No 431
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=76.99 E-value=23 Score=36.15 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=28.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHh----------CCCCCCeEEEECC
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKG----------NGLHGPYLVIAPL 247 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~----------~~~~~~~LIV~P~ 247 (759)
-++|+.+.|+|||..++.++..+.. ....+++|+++--
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E 50 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE 50 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC
Confidence 4789999999999999988776542 1235678888853
No 432
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=76.56 E-value=15 Score=35.70 Aligned_cols=133 Identities=12% Similarity=0.111 Sum_probs=69.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHH---HHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW---VNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAI 288 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W---~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~ 288 (759)
.+.---|=|||-.|+.++.... |...+++||== +-..| ...+.+.+|.+.+..+..+..-. .
T Consensus 25 ~VYtGdGKGKTTAAlGlalRAa--G~G~rV~iiQF--lKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~---------~-- 89 (178)
T PRK07414 25 QVFTSSQRNFFTSVMAQALRIA--GQGTPVLIVQF--LKGGIQQGPDRPIQLGQNLDWVRCDLPRCLD---------T-- 89 (178)
T ss_pred EEEeCCCCCchHHHHHHHHHHh--cCCCEEEEEEE--ecCCCcchHHHHHHhCCCcEEEECCCCCeee---------C--
Confidence 4555678899988888765444 44457766632 11122 22233344554444332110000 0
Q ss_pred CCCCC-EEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC----hhhHHHHHHhcCCCCcEEEEecCCCCCCHHHH
Q 004347 289 GPKFP-IVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN----PKCKLLKELKYIPIGNKLLLTGTPLQNNLAEL 360 (759)
Q Consensus 289 ~~~~~-vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn----~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el 360 (759)
.... .-...+.......+..+..-.|++||+||.-..-+ ....+...+..-+..--++|||--.+..+.++
T Consensus 90 -~~~~~~~~~~~~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~ 165 (178)
T PRK07414 90 -PHLDESEKKALQELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAI 165 (178)
T ss_pred -CCcCHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 0000 00011122223334556677899999999876654 33456666666666678999997444333333
No 433
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=76.41 E-value=5.4 Score=41.67 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 190 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
+.+.|.+.+.+++. ..+...+++-++|+|||...-+++.++..
T Consensus 64 ~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 64 LKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 66788888877764 23334689999999999988888877643
No 434
>PHA00012 I assembly protein
Probab=76.31 E-value=6.9 Score=41.68 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=24.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST 249 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl 249 (759)
++.--+|+|||+.|++-|......|. .|++-..+
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~Gr----~VaTNidL 38 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKGC----IVATNLNL 38 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcCC----EEEeCCcc
Confidence 45556899999999987777777653 56665443
No 435
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=76.29 E-value=38 Score=30.43 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=31.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVP 262 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p 262 (759)
.++.-..|.|||..+..+..++...+ .++++|--.. ..+.+++..+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g--~~V~~id~D~--~~~~~~~~~~~~ 49 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG--KPVLAIDADP--DDLPERLSVEVG 49 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCc--hhhHHHHhhccC
Confidence 35667799999999988888887653 3555544322 555555555543
No 436
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=75.80 E-value=5.2 Score=41.04 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=53.0
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCeEEE--ECCccH-----------H----------HHHHHHHHhCCCceEEEEe
Q 004347 214 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI--APLSTL-----------S----------NWVNEISRFVPSVSAIIYH 270 (759)
Q Consensus 214 ademGlGKTl~ai~li~~l~~~~~~~~~LIV--~P~sll-----------~----------~W~~E~~~~~p~~~~~~~~ 270 (759)
.--=|.|||..+..+...|...|. ++|+| +|.+.+ . .|.....+...++.++.|.
T Consensus 8 s~kGGvG~TTltAnLA~aL~~~G~--~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~LPfG 85 (243)
T PF06564_consen 8 SPKGGVGKTTLTANLAWALARLGE--SVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDFLPFG 85 (243)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCC--cEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEEEcCC
Confidence 334589999999999998888764 55554 454444 2 2444444445556666665
Q ss_pred CChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh-hcCccEEEEcCcc
Q 004347 271 GSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR-HYNWKYLVVDEGH 324 (759)
Q Consensus 271 g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~-~~~~~~lIvDEaH 324 (759)
.-...... . +.-.......+.+.+ ..+. ..+|++||+|=.+
T Consensus 86 ~l~~~~~~-~-----------~~~l~~~~~~l~~~l-~~l~~~~~~~~iliD~P~ 127 (243)
T PF06564_consen 86 QLTEAERE-A-----------FEQLAQDPQWLARAL-AALKALGPYDWILIDTPP 127 (243)
T ss_pred CCCHHHHH-H-----------HHHhhcCHHHHHHHH-HHHhccCCCCEEEEeCCC
Confidence 43322211 0 001112233344433 2333 5678999999665
No 437
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=75.60 E-value=7.4 Score=47.07 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=28.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 253 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W 253 (759)
..+.+|.-+.|+|||..+-+++..+ ..+++.|-+..++..|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~-----~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES-----GANFIAVRGPEILSKW 527 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHHHhhcc
Confidence 4567889999999998877776543 2467766665554444
No 438
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=75.55 E-value=11 Score=41.00 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=32.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
++.+++-+.|+|||+.|=|++.. .+ ..|.=|.-..+.+.|.-|-++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE---c~--tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE---CG--TTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh---hc--CeEEEechhhhhhhhccchHHH
Confidence 46789999999999887766543 21 3555566666778887665543
No 439
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=75.50 E-value=13 Score=42.48 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHH-HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 192 SYQLKGVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 192 pyQ~~gv~~l~~-~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
+--..++..++. -+..|.-.++.-++|+|||..++.++.....+| .++++++---...+.......+
T Consensus 246 ~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~g--e~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 246 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANK--ERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred CCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCHHHHHHHHHHc
Confidence 334555666652 122233358999999999999999998887764 4788888877777777777665
No 440
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=75.46 E-value=10 Score=43.79 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=38.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhC
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFV 261 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 261 (759)
...++.-++|+|||.-+..++......| .++++|+-.....+..+.+..+.
T Consensus 274 ~~~li~G~~G~GKT~l~~~~~~~~~~~g--~~~~yis~e~~~~~i~~~~~~~g 324 (509)
T PRK09302 274 SIILVSGATGTGKTLLASKFAEAACRRG--ERCLLFAFEESRAQLIRNARSWG 324 (509)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCC--CcEEEEEecCCHHHHHHHHHHcC
Confidence 3347889999999999999988776654 58888887666666666665553
No 441
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=75.37 E-value=13 Score=44.97 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=19.8
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l 232 (759)
.+.+.+|.-+.|+|||..+-+++..+
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Confidence 35667899999999998776665543
No 442
>CHL00206 ycf2 Ycf2; Provisional
Probab=75.30 E-value=8.7 Score=49.98 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=30.7
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 253 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W 253 (759)
..+|.+|.-++|+|||+.|=+++... .-|++-|....++..|
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es-----~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS-----YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc-----CCceEEEEHHHHhhcc
Confidence 35677899999999998877766542 3477777776666665
No 443
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=75.04 E-value=1.4e+02 Score=36.99 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~ 234 (759)
.++.-++|+|||..|-++...+..
T Consensus 598 ~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 598 FLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 579999999999999888877654
No 444
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=75.01 E-value=6.4 Score=40.92 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=61.7
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCC-------ceEEEEeCChhHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPS-------VSAIIYHGSKKERDE 278 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~-------~~~~~~~g~~~~r~~ 278 (759)
..|...++.-.+|+|||+-++-++...... ..|++.|+-...-..-.+.+..|..+ ....++........
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~- 97 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKG- 97 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccccccc-
Confidence 345566899999999999999999888877 36899998765554444444443222 12223222221110
Q ss_pred HHHhcCCCCCCCCCCEE---EecHHHHHHHHHHhhhhcCccEEEEcCcc
Q 004347 279 IRRKHMPRAIGPKFPIV---VTSYEVALSDARKYLRHYNWKYLVVDEGH 324 (759)
Q Consensus 279 ~~~~~~~~~~~~~~~vv---Ittye~l~~~~~~~l~~~~~~~lIvDEaH 324 (759)
....+ ....+.+...+.......+...+|+|=.-
T Consensus 98 ------------~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 98 ------------LVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred ------------cccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 00011 12344455555566666667888888554
No 445
>PHA02542 41 41 helicase; Provisional
Probab=74.79 E-value=15 Score=41.69 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=41.5
Q ss_pred HHHHHHHH-HHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHH
Q 004347 195 LKGVKWLI-SLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEI 257 (759)
Q Consensus 195 ~~gv~~l~-~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~ 257 (759)
...+.-+. .-+..|.-.|+|..+|.|||.-++.++...... ..+++++.--.-..++...+
T Consensus 176 ~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~--g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 176 LEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ--GYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred cHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc--CCcEEEEeccCCHHHHHHHH
Confidence 34455555 333444446999999999999999988777643 46888887655555555544
No 446
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=74.68 E-value=10 Score=40.68 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCCeEEE
Q 004347 217 MGLGKTIQTIAFLAHLKGNGLHGPYLVI 244 (759)
Q Consensus 217 mGlGKTl~ai~li~~l~~~~~~~~~LIV 244 (759)
=|.|||.++.|+...+...| .+ +|+|
T Consensus 11 GGVGKTT~aaA~A~~lA~~g-~k-vLlv 36 (322)
T COG0003 11 GGVGKTTIAAATAVKLAESG-KK-VLLV 36 (322)
T ss_pred CcccHHHHHHHHHHHHHHcC-Cc-EEEE
Confidence 48899999999999998887 44 5555
No 447
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=74.67 E-value=18 Score=47.42 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=42.7
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh--CCCCCCeEEEECCccHH
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG--NGLHGPYLVIAPLSTLS 251 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~--~~~~~~~LIV~P~sll~ 251 (759)
..|.+-|.+++..++. ....-.+|---.|+|||.+.-+++..+.. ......++.++|+.--.
T Consensus 966 ~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 966 EGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 4688999999998875 22345677778999999886666555432 12224577889977443
No 448
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=74.47 E-value=17 Score=47.11 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=42.0
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh--CCCCCCeEEEECCccHH
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG--NGLHGPYLVIAPLSTLS 251 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~--~~~~~~~LIV~P~sll~ 251 (759)
.|.+-|.+++..++. ..+.-.+|.-.-|+|||.+.-+++..+.. ......++.++|+.--.
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV 897 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH
Confidence 689999999988775 23345678888999999886555444332 12234678889976543
No 449
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=74.21 E-value=10 Score=40.43 Aligned_cols=53 Identities=21% Similarity=0.134 Sum_probs=36.7
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 190 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
..|-|..=+..+... .-.-|| -+-|+|||+-+.+.....+..+...++|.-=|
T Consensus 129 kt~~Q~~y~eai~~~--di~fGi--GpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 129 KTPGQNMYPEAIEEH--DIVFGI--GPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred cChhHHHHHHHHHhc--Ceeeee--cccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 446787766666541 111122 37899999999999888888887777776666
No 450
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=74.04 E-value=20 Score=34.77 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=60.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-HHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGP 290 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~ 290 (759)
.+.--.|=|||-.|+.++...... ..+++||==.-- ...=...+.+.+|++....+...-..+.. ..
T Consensus 7 ~vytG~GKGKTTAAlGlalRA~G~--G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~----------~~ 74 (172)
T PF02572_consen 7 QVYTGDGKGKTTAALGLALRAAGH--GMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFVWRMN----------EE 74 (172)
T ss_dssp EEEESSSS-HHHHHHHHHHHHHCT--T--EEEEESS--SS--HHHHHHGGGT--EEEE--TT----GG----------GH
T ss_pred EEEeCCCCCchHHHHHHHHHHHhC--CCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCcccccCC----------Cc
Confidence 455557889999888876554444 457777643111 11112223334444333322110000000 00
Q ss_pred CCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC----hhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhh
Q 004347 291 KFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN----PKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLL 364 (759)
Q Consensus 291 ~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn----~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll 364 (759)
..+ ..............+..-.|++||+||.=..-+ ....+...+..-+...-|+|||--.+..+.++..++
T Consensus 75 ~~~--~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADlV 150 (172)
T PF02572_consen 75 EED--RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADLV 150 (172)
T ss_dssp HHH--HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SEE
T ss_pred HHH--HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCee
Confidence 000 000111222233456667899999999876543 334566666666677779999976544444444433
No 451
>PRK06749 replicative DNA helicase; Provisional
Probab=74.04 E-value=10 Score=42.64 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHH
Q 004347 198 VKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 259 (759)
Q Consensus 198 v~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~ 259 (759)
+..+..-+++|.=.|||.-+|.|||.-++.++.+.... ..++++++.-.--.++...+..
T Consensus 176 LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~--g~~v~~fSlEMs~~ql~~R~ls 235 (428)
T PRK06749 176 LNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKS--GAAVGLFSLEMSSKQLLKRMAS 235 (428)
T ss_pred HHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhc--CCCEEEEEeeCCHHHHHHHHHH
Confidence 55555545555557999999999999999888877654 4688999886666666555433
No 452
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=73.91 E-value=2.3 Score=48.96 Aligned_cols=82 Identities=16% Similarity=0.245 Sum_probs=49.9
Q ss_pred CcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCH-----HHHHHHHHHhhccC-CCceEEEEecc--cccCCCCCC--
Q 004347 531 HKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRL-----DERKRQIQDFNDVN-SSYRIFLLSTR--AGGLGINLT-- 600 (759)
Q Consensus 531 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~-----~~R~~~i~~F~~~~-~~~~v~LlsT~--agg~GINL~-- 600 (759)
.=|++|..+-..+..+..++...|+- .+|.|.-+. ..-.++++.|...- .+.-.+|++.- -+++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~ 708 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDD 708 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEeccccccccccccc
Confidence 44888888888888888888766542 222221110 01346677775421 11123566543 346999997
Q ss_pred CCCEEEEeCCCCC
Q 004347 601 AADTCILYDSDWN 613 (759)
Q Consensus 601 ~a~~VI~~D~~wn 613 (759)
-+..||....|+-
T Consensus 709 LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 709 LGRAVVVVGLPYP 721 (821)
T ss_pred cccEEEEeecCCC
Confidence 4888998888873
No 453
>PF05729 NACHT: NACHT domain
Probab=73.90 E-value=18 Score=34.02 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=22.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLH 238 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~ 238 (759)
.+|.-+.|.|||..+-.++..+...+..
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~ 30 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPP 30 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcc
Confidence 4677889999999998888888775543
No 454
>PRK09354 recA recombinase A; Provisional
Probab=73.81 E-value=21 Score=38.76 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=31.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN 252 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~ 252 (759)
..++-+.|+|||..++.++...... .++++.|..-..+..
T Consensus 63 teI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~ 102 (349)
T PRK09354 63 VEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP 102 (349)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH
Confidence 4688899999999999888877655 367888887666654
No 455
>PF12846 AAA_10: AAA-like domain
Probab=73.79 E-value=11 Score=39.74 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=34.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHH
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE 256 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E 256 (759)
.+.++.-.+|+|||..+..++..+...| .+++|+=|..-...|.+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g--~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRG--PRVVIFDPKGDYSPLARA 47 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcC--CCEEEEcCCchHHHHHHh
Confidence 4678888899999999888888888775 567777666554444443
No 456
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=73.72 E-value=4.5 Score=42.27 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=31.7
Q ss_pred HHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 199 KWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 199 ~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
.++......+.+.+++-++|+|||.+.-+++..+... ..++++|-
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~--~~~iv~iE 162 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE--DERIVTIE 162 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT--TSEEEEEE
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc--ccceEEec
Confidence 4444444567888999999999999988887766554 23455544
No 457
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=73.16 E-value=90 Score=33.72 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=29.2
Q ss_pred hhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHH
Q 004347 205 WQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 253 (759)
Q Consensus 205 ~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W 253 (759)
...+...+|.-|.|+||+..|-++-. . .....+|++.|--..+-..|
T Consensus 19 a~~~~pVLI~GE~GtGK~~lAr~iH~-~-s~r~~~pfv~vnc~~~~~~~ 65 (329)
T TIGR02974 19 APLDRPVLIIGERGTGKELIAARLHY-L-SKRWQGPLVKLNCAALSENL 65 (329)
T ss_pred hCCCCCEEEECCCCChHHHHHHHHHH-h-cCccCCCeEEEeCCCCChHH
Confidence 35577889999999999986654322 2 22234677766544443433
No 458
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=72.61 E-value=10 Score=36.13 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCC
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAI 288 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~ 288 (759)
....+--.+|+|||..+.-++..|...| ..--=|+||..- +=.+.. +++++-..... +..+.........
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kvgGf~t~EVR------~gGkR~-GF~Ivdl~tg~--~~~la~~~~~~~r 75 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YKVGGFITPEVR------EGGKRI-GFKIVDLATGE--EGILARVGFSRPR 75 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-ceeeeEEeeeee------cCCeEe-eeEEEEccCCc--eEEEEEcCCCCcc
Confidence 3456778899999998888887887765 223345555221 100000 22332222111 0000000011111
Q ss_pred CCCCCEEEecHHHHH-HHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC-CCCcEEE
Q 004347 289 GPKFPIVVTSYEVAL-SDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI-PIGNKLL 347 (759)
Q Consensus 289 ~~~~~vvIttye~l~-~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l-~~~~rll 347 (759)
-++|.|-+-..+.+. ..+++.+.. -|++||||.--+-+...++..++... .+...++
T Consensus 76 vGkY~V~v~~le~i~~~al~rA~~~--aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpli 134 (179)
T COG1618 76 VGKYGVNVEGLEEIAIPALRRALEE--ADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLI 134 (179)
T ss_pred cceEEeeHHHHHHHhHHHHHHHhhc--CCEEEEecccchhhccHHHHHHHHHHhcCCCcEE
Confidence 234555544444222 222233333 48999999998877666666776654 3444433
No 459
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=71.78 E-value=33 Score=34.10 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=31.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHH
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEI 257 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~ 257 (759)
..+.-+.|+|||.-++.++......+ .+++.|.-......+..++
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g--~~v~yi~~e~~~~~rl~~~ 59 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQG--KKVVYIDTEGLSPERFKQI 59 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCCHHHHHHH
Confidence 47888999999999998888776553 5777777754233333333
No 460
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=71.65 E-value=6.4 Score=41.32 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=58.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCC----CCCCeEEEECCc-cH-----HHHHHHHHHh--C--CCceEEEEeCCh
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNG----LHGPYLVIAPLS-TL-----SNWVNEISRF--V--PSVSAIIYHGSK 273 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~----~~~~~LIV~P~s-ll-----~~W~~E~~~~--~--p~~~~~~~~g~~ 273 (759)
..-|++.-+||+||+- +++.|.... ....+.+|+|.. ++ .-|..++..= . |...++.-.|+
T Consensus 87 P~I~~VYGPTG~GKSq----LlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t- 161 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQ----LLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGT- 161 (369)
T ss_pred ceEEEEECCCCCCHHH----HHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccc-
Confidence 3447889999999994 555555433 345689999933 33 5588887542 1 22222222221
Q ss_pred hHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH-------HHhh---hhcCccEEEEcCcccc
Q 004347 274 KERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA-------RKYL---RHYNWKYLVVDEGHRL 326 (759)
Q Consensus 274 ~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~-------~~~l---~~~~~~~lIvDEaH~i 326 (759)
-.+++|-+||+-+..+. .+.| ...+.-+||+||+=.-
T Consensus 162 ----------------~~P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~ 208 (369)
T PF02456_consen 162 ----------------FRPKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEK 208 (369)
T ss_pred ----------------ccccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHH
Confidence 24567888888766542 1112 2446779999998643
No 461
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=71.59 E-value=7.4 Score=45.02 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=38.6
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHH
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLK 233 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~ 233 (759)
...++++.|..-++-+......|.-||+-.+||+|||+..| +.+.+|.
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 34578899998888888888899999999999999999855 3344443
No 462
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=71.18 E-value=12 Score=43.92 Aligned_cols=85 Identities=20% Similarity=0.133 Sum_probs=58.8
Q ss_pred ccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC----CCCCeEEEEC-CccHHHHHHHH
Q 004347 183 SLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG----LHGPYLVIAP-LSTLSNWVNEI 257 (759)
Q Consensus 183 ~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~----~~~~~LIV~P-~sll~~W~~E~ 257 (759)
|...-..|..-|+.+...++. ..-.|+--..|+|||++++-++..|+.+. ..-|+||+|= .+.+.|...-+
T Consensus 372 p~~g~~ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligi 447 (1025)
T KOG1807|consen 372 PGPGLVILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGI 447 (1025)
T ss_pred CCCCceeecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHH
Confidence 333334567789999888875 44568889999999999999999888743 3458999998 45677776655
Q ss_pred HHhCCCceEEEEeCCh
Q 004347 258 SRFVPSVSAIIYHGSK 273 (759)
Q Consensus 258 ~~~~p~~~~~~~~g~~ 273 (759)
... .-..++..|+.
T Consensus 448 y~~--qrpsImr~gsr 461 (1025)
T KOG1807|consen 448 YYH--QRPSIMRQGSR 461 (1025)
T ss_pred Hhc--CCceEEEeccc
Confidence 432 22334444443
No 463
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=70.89 E-value=16 Score=37.34 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=27.9
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCeEEEE--CCccHHHHHH
Q 004347 216 QMGLGKTIQTIAFLAHLKGNGLHGPYLVIA--PLSTLSNWVN 255 (759)
Q Consensus 216 emGlGKTl~ai~li~~l~~~~~~~~~LIV~--P~sll~~W~~ 255 (759)
-=|.|||..++.+...+...| .+++||= |...+..|..
T Consensus 10 KGGvGKTT~a~nLA~~la~~G--~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 10 KGGAGKTTALMGLCAALASDG--KRVALFEADENRPLTRWKE 49 (231)
T ss_pred CCCccHHHHHHHHHHHHHhCC--CcEEEEeCCCCCCHHHHHH
Confidence 358999999999998888765 3665552 4556778864
No 464
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=70.68 E-value=26 Score=36.71 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=35.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhC
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFV 261 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 261 (759)
++.+|.-+.|+||+..|-+.+.. ....+.-|....+++.|.-|-++..
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATE-----AnSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATE-----ANSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhh-----cCCceEEeehHHHHHHHhccHHHHH
Confidence 35688999999999876665543 2256777777889999988876653
No 465
>PRK08939 primosomal protein DnaI; Reviewed
Probab=70.36 E-value=15 Score=39.33 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=32.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 259 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~ 259 (759)
+.|.+|.-.+|+|||..+.+++..+...| .+++++.- +.+..++..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g--~~v~~~~~----~~l~~~lk~ 201 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKG--VSSTLLHF----PEFIRELKN 201 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCEEEEEH----HHHHHHHHH
Confidence 45667888999999999999999998764 34554433 234455543
No 466
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=69.90 E-value=12 Score=42.94 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=19.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~ 231 (759)
..+.+|.-++|+|||..+-+++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 456799999999999887777654
No 467
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=69.69 E-value=32 Score=37.90 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=62.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGP 290 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~ 290 (759)
.+++-+.|.||+..-+-+++.+..++ ++|.|+=---+.||.-...+..- +
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~QiklRA~RL~~---------------------------~ 145 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQIKLRADRLGL---------------------------P 145 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHHHHHHHHHhCC---------------------------C
Confidence 48899999999988887777777664 99999998888998877776631 1
Q ss_pred CCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccC
Q 004347 291 KFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 291 ~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn 328 (759)
..++.+.....+ .++...+...+++++|||=.+.+-+
T Consensus 146 ~~~l~l~aEt~~-e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 146 TNNLYLLAETNL-EDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred ccceEEehhcCH-HHHHHHHHhcCCCEEEEeccceeec
Confidence 123344333222 2334566778899999999988754
No 468
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=69.69 E-value=34 Score=36.38 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=27.8
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHh--------CCCCCCeEEEEC
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKG--------NGLHGPYLVIAP 246 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~--------~~~~~~~LIV~P 246 (759)
..+...||+.+-|+|||...|-++-++.. ....|.+|+|.-
T Consensus 87 r~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvsl 135 (402)
T COG3598 87 RKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSL 135 (402)
T ss_pred hcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEe
Confidence 45888899999999999886655444332 123456777654
No 469
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=69.57 E-value=50 Score=35.70 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=29.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-----HHHHHHHHHHh
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-----LSNWVNEISRF 260 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-----l~~W~~E~~~~ 260 (759)
-+.-..|+|||..+-.++..+...+..--++-+=|.+. +..|...+...
T Consensus 60 gi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~ 113 (332)
T PRK09435 60 GITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERL 113 (332)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhh
Confidence 45666999999888888888876643222333334443 34466555543
No 470
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=69.42 E-value=63 Score=36.70 Aligned_cols=46 Identities=13% Similarity=0.322 Sum_probs=28.3
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 253 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W 253 (759)
..+...++.-|.|+|||..|-++-.. .....+|+++|--..+-..|
T Consensus 159 ~~~~~vli~Ge~GtGK~~lA~~ih~~--s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 159 RSSISVLINGESGTGKELVAHALHRH--SPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccCCeEEEEeCCCCcHHHHHHHHHhc--CCCCCCCeEeeeCCCCCHHH
Confidence 45667899999999999765443322 22234677766544443333
No 471
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=69.01 E-value=8.9 Score=41.50 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=28.0
Q ss_pred HHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 199 KWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 199 ~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
.|+..+...+.+.+++-.+|+|||...-+++.++..
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 455555577889999999999999887777766543
No 472
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=68.35 E-value=83 Score=37.81 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=26.5
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 247 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~ 247 (759)
..+.+.+|.-|+|+|||..|-++-... ....+|++.|--.
T Consensus 397 ~~~~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~i~c~ 436 (686)
T PRK15429 397 QSDSTVLILGETGTGKELIARAIHNLS--GRNNRRMVKMNCA 436 (686)
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEEEecc
Confidence 456688999999999998766553322 2234577665443
No 473
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=68.18 E-value=27 Score=32.66 Aligned_cols=86 Identities=16% Similarity=0.014 Sum_probs=56.4
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
...+..++.+++.+..+.|+||+|+|.....++.|.++|-...-.-..=||-.... ......| +|+.
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~-----------~~~~~PV-~l~~- 77 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG-----------PAAGQPV-LLTW- 77 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC-----------CCCCCCE-EEEc-
Confidence 35588999999999999999999999999999999999975422222222221100 0122334 4441
Q ss_pred cccCCCCCCCCCEEEEeCCCC
Q 004347 592 AGGLGINLTAADTCILYDSDW 612 (759)
Q Consensus 592 agg~GINL~~a~~VI~~D~~w 612 (759)
+..-|...++.+|+++..+
T Consensus 78 --~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 78 --PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred --CCCCCCCCCcEEEECCCCC
Confidence 1123566788899888754
No 474
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=67.92 E-value=17 Score=33.88 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccC
Q 004347 516 FRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGL 595 (759)
Q Consensus 516 ~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~ 595 (759)
..++.+++.+....|+|++|+|.....+..|.+.|-...-.-..=||-.... ...... ++|++....
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~-----------~~~~~P-V~i~~~~~~- 81 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP-----------PAARQP-VLITWDQEA- 81 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S-----------STT--S-EEEE-TTS--
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC-----------CCCCCe-EEEecCccc-
Confidence 5888999999999999999999999999999999976532222222221100 011123 466654322
Q ss_pred CCCCCCCCEEEEeCCCC
Q 004347 596 GINLTAADTCILYDSDW 612 (759)
Q Consensus 596 GINL~~a~~VI~~D~~w 612 (759)
-....++.+|+++..+
T Consensus 82 -~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 82 -NPNNHADVLINLSGEV 97 (137)
T ss_dssp ----S--SEEEE--SS-
T ss_pred -CCCCCCCEEEECCCCC
Confidence 2344589999998887
No 475
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=67.84 E-value=40 Score=29.19 Aligned_cols=48 Identities=8% Similarity=0.009 Sum_probs=36.3
Q ss_pred CCcEEEEcc------chhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhh
Q 004347 530 NHKVLVFSQ------WTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 577 (759)
Q Consensus 530 ~~kvLIFsq------~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 577 (759)
.++|+||+. +......+..+|...|++|..++=....+.|..+.....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg 64 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSN 64 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhC
Confidence 589999974 456678888999999999998886656666666655543
No 476
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=67.56 E-value=10 Score=42.14 Aligned_cols=37 Identities=22% Similarity=0.101 Sum_probs=24.0
Q ss_pred EEEcCCCCcHHHHHHHHHH-HHHhCCCCCCeEEEECCc
Q 004347 212 ILADQMGLGKTIQTIAFLA-HLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 212 ILademGlGKTl~ai~li~-~l~~~~~~~~~LIV~P~s 248 (759)
++.-..|+|||..++..+. .+.......++||+.|..
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~ 42 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQ 42 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhh
Confidence 5556689999988665444 333322446788888843
No 477
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=67.40 E-value=18 Score=38.67 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHHHHHHhCC
Q 004347 217 MGLGKTIQTIAFLAHLKGNG 236 (759)
Q Consensus 217 mGlGKTl~ai~li~~l~~~~ 236 (759)
=|+|||=.++.++..+..+|
T Consensus 39 GGTGKTP~v~~La~~l~~~G 58 (311)
T TIGR00682 39 GGTGKTPVVVWLAELLKDRG 58 (311)
T ss_pred CCcChHHHHHHHHHHHHHCC
Confidence 49999999999999998764
No 478
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=66.75 E-value=25 Score=37.32 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=32.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHh----CCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKG----NGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~----~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
.+|--++|+|||--+=+++..|-- +...+-.+=|---++.+.|..|-.+.
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKl 233 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKL 233 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhH
Confidence 366778999999998888887753 22223333344456778887775443
No 479
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=66.59 E-value=42 Score=33.85 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=27.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 247 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~ 247 (759)
.+++-+.|+|||..++.++......+ .++++|.=.
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~--~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNG--KKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEECC
Confidence 48999999999999999988776653 566666654
No 480
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=66.57 E-value=16 Score=40.54 Aligned_cols=56 Identities=20% Similarity=0.081 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHH-HHhCCCCCCeEEEECCccHHHHHH
Q 004347 195 LKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAH-LKGNGLHGPYLVIAPLSTLSNWVN 255 (759)
Q Consensus 195 ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~-l~~~~~~~~~LIV~P~sll~~W~~ 255 (759)
+..+..++...+++.|.|+--+.|+|||..+.++..+ ....| ..+++..++.+-..
T Consensus 196 ~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-----~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 196 LLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG-----GTITVAKLFYNIST 252 (449)
T ss_pred HHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-----CcCcHHHHHHHHHH
Confidence 3344445455678999999999999999888876665 44444 44555555555444
No 481
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=66.06 E-value=47 Score=35.82 Aligned_cols=62 Identities=13% Similarity=0.335 Sum_probs=27.5
Q ss_pred CEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChh-hHHHHHHhcCCCCc-EEEEecCCCCCC
Q 004347 293 PIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPK-CKLLKELKYIPIGN-KLLLTGTPLQNN 356 (759)
Q Consensus 293 ~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~-s~~~~~l~~l~~~~-rllLTgTPl~n~ 356 (759)
.|.+.+.+.-. . ...+....++++|+||+-.+.+.. ......+..-.... +++.|.||-.++
T Consensus 78 ~i~~~~~~~~~-~-~~~~~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~ 141 (384)
T PF03237_consen 78 RIQFRGADSPD-S-GDNIRGFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIRMYISTPPNPGG 141 (384)
T ss_dssp EEEEES------S-HHHHHTS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--EEEEEE---SSS
T ss_pred EEEEecccccc-c-cccccccccceeeeeecccCchHHHHHHHHhhhhcccCcceEEeecCCCCCC
Confidence 35555554311 1 134566788999999988876432 22333333333333 336666665444
No 482
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=65.88 E-value=12 Score=40.99 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=27.4
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEE
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 244 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV 244 (759)
.+...+++-+||+|||...-+++.++........++.|
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 34567899999999999998888888764333344433
No 483
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=65.51 E-value=48 Score=38.18 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=44.4
Q ss_pred HHHHHHHHH-HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 195 LKGVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 195 ~~gv~~l~~-~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
..++.-++. -+..|.-.+|+-++|+|||.-++.++.....+ ...++|+|+=-....+..+.+..+
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccCCHHHHHHHHHHc
Confidence 345555542 22334456899999999999999888765544 135888888777777766666655
No 484
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=65.29 E-value=53 Score=33.78 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=22.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEE
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 244 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV 244 (759)
+++--+|+|||..|-.+..++...+ .++.++
T Consensus 3 vl~G~pGSGKST~a~~La~~l~~~~--~~v~~i 33 (249)
T TIGR03574 3 ILTGLPGVGKSTFSKELAKKLSEKN--IDVIIL 33 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcC--CceEEE
Confidence 6777899999999988888776542 244444
No 485
>CHL00195 ycf46 Ycf46; Provisional
Probab=65.10 E-value=11 Score=43.16 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=25.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 247 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~ 247 (759)
.++.+|.-+.|+|||+.|=+++..+ ..|++.+-+.
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~-----~~~~~~l~~~ 293 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW-----QLPLLRLDVG 293 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEEhH
Confidence 4567899999999998887776543 2366666553
No 486
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=64.81 E-value=36 Score=34.25 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=28.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCC----CCCCeEEEECCcc
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNG----LHGPYLVIAPLST 249 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~----~~~~~LIV~P~sl 249 (759)
..|+-+.|+|||..++.++......+ ...+++.|.....
T Consensus 22 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred EEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 47888999999999998877654432 2356777777543
No 487
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=64.63 E-value=64 Score=34.13 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=65.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGP 290 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~ 290 (759)
-++..+-|.||+..|.+++..+..... + . .+..|. ..-+|++..+.-.|...
T Consensus 22 yLf~G~~G~Gk~~lA~~~A~~llC~~~--~------~-~c~~~~---~~~HPD~~~i~p~~~~~---------------- 73 (290)
T PRK05917 22 IILHGQDLSNLSARAYELASLILKETS--P------E-AAYKIS---QKIHPDIHEFSPQGKGR---------------- 73 (290)
T ss_pred EeeECCCCCcHHHHHHHHHHHHhCCCC--c------c-HHHHHh---cCCCCCEEEEecCCCCC----------------
Confidence 368888999999999999998876421 1 0 111111 11245554432222110
Q ss_pred CCCEEEecHHHHHHHHHHhhh----hcCccEEEEcCcccccC-hhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHh
Q 004347 291 KFPIVVTSYEVALSDARKYLR----HYNWKYLVVDEGHRLKN-PKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWS 362 (759)
Q Consensus 291 ~~~vvIttye~l~~~~~~~l~----~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~s 362 (759)
..+.+.++. +...+. ..+++++|||+||++.. ....+.+.+..-+....++|.++-...-+.-+.|
T Consensus 74 -----~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 74 -----LHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred -----cCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 012233221 122221 23678999999999973 4455666666666666666666644444444443
No 488
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=64.39 E-value=14 Score=42.21 Aligned_cols=42 Identities=26% Similarity=0.221 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhcCCC---eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 194 QLKGVKWLISLWQNGLN---GILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~~---~ILademGlGKTl~ai~li~~l~~~ 235 (759)
|...+..|...+.+++- -++.-.=|+|||..|=.++..|...
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 44444455444444432 3788889999998877777776653
No 489
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=64.22 E-value=16 Score=35.84 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=32.3
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l 232 (759)
.+.+-+.|..-+.+++ ..+.+.+++-++|+|||...-+++..+
T Consensus 7 ~g~~~~~~~~~l~~~v---~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 7 QGTFSPLQAAYLWLAV---EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred cCCCCHHHHHHHHHHH---hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4566777877777766 457788999999999998766655544
No 490
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=64.13 E-value=46 Score=34.52 Aligned_cols=123 Identities=18% Similarity=0.054 Sum_probs=67.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh-CCCceEEEEeCChhHHHHHHHhcCCCCC
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF-VPSVSAIIYHGSKKERDEIRRKHMPRAI 288 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~-~p~~~~~~~~g~~~~r~~~~~~~~~~~~ 288 (759)
.-++.-..|+||.-.|++++.++.-....+ |-..+. ....+... +|++..+.-.+..
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~------~Cg~C~-sC~~i~~~~HPDl~~i~p~~~~--------------- 66 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANG------FCKTCE-SCLKILNGKYNDFYLIFDQKNP--------------- 66 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCC------CCCCCH-HHHHHhcCCCCCEEEecCCccc---------------
Confidence 347778899999999999999887643222 222222 12223322 4554432111110
Q ss_pred CCCCCEEEecHHHHHHHHHHhh-----hhcCccEEEEcCcccccC-hhhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHh
Q 004347 289 GPKFPIVVTSYEVALSDARKYL-----RHYNWKYLVVDEGHRLKN-PKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWS 362 (759)
Q Consensus 289 ~~~~~vvIttye~l~~~~~~~l-----~~~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~s 362 (759)
..-+.++.-. ..+ ...+++++|||+|+++.. ....+.+.+..-+....++|+++-..+-+.-+.|
T Consensus 67 --------I~id~ir~l~-~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~S 137 (261)
T PRK05818 67 --------IKKEDALSII-NKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILS 137 (261)
T ss_pred --------CCHHHHHHHH-HHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhh
Confidence 1122222211 211 123589999999999974 3445556666656666666766644555555555
Q ss_pred h
Q 004347 363 L 363 (759)
Q Consensus 363 l 363 (759)
-
T Consensus 138 R 138 (261)
T PRK05818 138 R 138 (261)
T ss_pred h
Confidence 3
No 491
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=64.01 E-value=7.8 Score=42.04 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhc----CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc
Q 004347 194 QLKGVKWLISLWQN----GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 194 Q~~gv~~l~~~~~~----~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s 248 (759)
.++++--++.+... |++.+||.++|+|||-.|+++...|- ..-||..++-.-
T Consensus 32 AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG---~~~PF~~isgSE 87 (398)
T PF06068_consen 32 AREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELG---EDVPFVSISGSE 87 (398)
T ss_dssp HHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCT---TTS-EEEEEGGG
T ss_pred HHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhC---CCCCeeEcccce
Confidence 34444445555443 45569999999999999999887764 446887777643
No 492
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=63.94 E-value=27 Score=32.49 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=55.5
Q ss_pred cEEEEccchhHHHHHHHHHHhcCc--eEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeC
Q 004347 532 KVLVFSQWTKILDIMEYYFNEKGY--EVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYD 609 (759)
Q Consensus 532 kvLIFsq~~~~ld~L~~~L~~~g~--~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D 609 (759)
.|=++||+-.+...+-.++..+|+ .+..=.|+...-.-.+.++-|.+ |+..+++++- ++
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~-D~~t~~I~ly------------------~E 63 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAE-DPDTRVIVLY------------------LE 63 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT--SS--EEEEE------------------ES
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhc-CCCCCEEEEE------------------cc
Confidence 467899999999999899888755 55666777665667788998887 7777775544 44
Q ss_pred CCCCcchhhHHhhhhhhcCCCCceEEEEEe
Q 004347 610 SDWNPQMDLQAMDRCHRIGQTKPVHVYRLA 639 (759)
Q Consensus 610 ~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli 639 (759)
.--||..+..+.-|+.|. |||.+|+-=
T Consensus 64 ~~~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 64 GIGDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp --S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred CCCCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 445888888888887764 999887753
No 493
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=63.79 E-value=9.3 Score=41.60 Aligned_cols=45 Identities=18% Similarity=0.017 Sum_probs=32.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEI 257 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~ 257 (759)
..+.+|.-+.|+|||++|=+++..+- -++++|....+.+.|.-|-
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg-----~~~i~vsa~eL~sk~vGEs 192 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMG-----IEPIVMSAGELESENAGEP 192 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcC-----CCeEEEEHHHhhcCcCCcH
Confidence 44567888899999999888877652 2567777766766665443
No 494
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=63.24 E-value=16 Score=46.94 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=45.6
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC-CCCeEEEECCccHHHHHHH
Q 004347 190 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL-HGPYLVIAPLSTLSNWVNE 256 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~-~~~~LIV~P~sll~~W~~E 256 (759)
+.+-|..+|. ..+.+.++...-|+|||.+.+.-+..+...+. ...+||||=+....+++++
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ 63 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKE 63 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHH
Confidence 5678988885 34778899999999999998887776665552 2468999987766655443
No 495
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=62.64 E-value=17 Score=40.75 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 198 VKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 198 v~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
+..++.....+.+.||...+|+|||..|-.++..+..
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4444555556889999999999999998877766543
No 496
>PF13479 AAA_24: AAA domain
Probab=62.25 E-value=20 Score=36.08 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=20.4
Q ss_pred EEEecHHHHHHHHHHhh--hhcCccEEEEcCccc
Q 004347 294 IVVTSYEVALSDARKYL--RHYNWKYLVVDEGHR 325 (759)
Q Consensus 294 vvIttye~l~~~~~~~l--~~~~~~~lIvDEaH~ 325 (759)
+-|.||+.+...+ ..+ ...+++.||||-+..
T Consensus 47 i~i~s~~~~~~~~-~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 47 IPITSWEDFLEAL-DELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eCcCCHHHHHHHH-HHHHhccCCCCEEEEECHHH
Confidence 4456888887755 223 245789999995543
No 497
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=62.05 E-value=57 Score=43.99 Aligned_cols=62 Identities=18% Similarity=0.035 Sum_probs=45.0
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN 252 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~ 252 (759)
+..|-+-|..++.-++. ....-.||--.-|+|||.+.-+++..+...| .++++++|+.--.+
T Consensus 427 ~~~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G--~~V~~lAPTgrAA~ 488 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEIAQLLLHLASEQG--YEIQIITAGSLSAQ 488 (1960)
T ss_pred cCCCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHHHHHhcC--CeEEEEeCCHHHHH
Confidence 34688999999988774 2234457777799999988776666555543 58999999875443
No 498
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=61.99 E-value=2.5e+02 Score=30.88 Aligned_cols=140 Identities=15% Similarity=0.093 Sum_probs=75.3
Q ss_pred CccchhHHHHHHHHHHHhhc--CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCce
Q 004347 188 GKLKSYQLKGVKWLISLWQN--GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVS 265 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~--~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~ 265 (759)
...|.+|..-+.-++..-.. ....+|.-..|+|||...-.++..+ .-+...+++.. +..|.--+.+..-...
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~e-cft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVE-CFTYAILLEKILNKSQ 81 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHH-hccHHHHHHHHHHHhc
Confidence 34688999888877752111 1123788889999998887777665 23566666632 2333333332211100
Q ss_pred EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh------hc-CccEEEEcCcccccChhhHHHHHHh
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR------HY-NWKYLVVDEGHRLKNPKCKLLKELK 338 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~------~~-~~~~lIvDEaH~ikn~~s~~~~~l~ 338 (759)
..-+.|.. +=.+.+.+..-. ..|. +. .--++|+|-|+.++...+.+...+.
T Consensus 82 ~~d~dg~~---------------------~~~~~en~~d~i-~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~ 139 (438)
T KOG2543|consen 82 LADKDGDK---------------------VEGDAENFSDFI-YLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLF 139 (438)
T ss_pred cCCCchhh---------------------hhhHHHHHHHHH-HHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHH
Confidence 00001110 000112121111 1111 11 2348999999999988877777666
Q ss_pred cC-----CCCcEEEEecCCCCC
Q 004347 339 YI-----PIGNKLLLTGTPLQN 355 (759)
Q Consensus 339 ~l-----~~~~rllLTgTPl~n 355 (759)
++ ...-++++++++..+
T Consensus 140 ~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 140 RLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHHHHhCCCceEEEEeccccHH
Confidence 55 234568888887644
No 499
>PRK10436 hypothetical protein; Provisional
Probab=60.55 E-value=13 Score=42.25 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=32.1
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
.+.+.|...+.+++. ....-.+++-.||+|||.+..+++.++..
T Consensus 201 G~~~~~~~~l~~~~~--~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 201 GMTPAQLAQFRQALQ--QPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred CcCHHHHHHHHHHHH--hcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 366777777777764 23334578999999999998888877643
No 500
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=59.82 E-value=23 Score=38.18 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=21.1
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~ 231 (759)
....|.||.-+.|+|||+.|=|.+.+
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 45788999999999999877666543
Done!