Query 004347
Match_columns 759
No_of_seqs 553 out of 3110
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 22:19:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 4.1E-85 1.4E-89 785.1 34.5 520 182-724 229-766 (800)
2 1z3i_X Similar to RAD54-like; 100.0 3.7E-79 1.3E-83 716.2 37.6 497 184-694 50-572 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 3E-73 1E-77 650.2 34.9 463 183-693 31-496 (500)
4 3dmq_A RNA polymerase-associat 100.0 1.1E-51 3.9E-56 502.2 29.6 440 187-661 151-634 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 2.6E-46 8.9E-51 423.5 32.9 437 188-660 8-493 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 3.1E-44 1.1E-48 374.8 20.9 255 416-693 12-267 (271)
7 2fwr_A DNA repair protein RAD2 100.0 3.2E-42 1.1E-46 390.6 23.5 372 186-659 90-471 (472)
8 4a2p_A RIG-I, retinoic acid in 100.0 4.4E-39 1.5E-43 371.9 34.2 445 187-664 5-529 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 7.1E-39 2.4E-43 385.1 34.7 451 184-664 243-770 (797)
10 4a2w_A RIG-I, retinoic acid in 100.0 1.5E-39 5.2E-44 395.2 26.7 444 186-664 245-770 (936)
11 3tbk_A RIG-I helicase domain; 100.0 1.3E-38 4.5E-43 367.6 30.6 415 188-664 3-528 (555)
12 3hgt_A HDA1 complex subunit 3; 100.0 1.2E-36 4E-41 317.0 21.8 216 429-652 20-247 (328)
13 2oca_A DAR protein, ATP-depend 100.0 7.9E-36 2.7E-40 341.4 27.1 345 188-647 112-463 (510)
14 2ykg_A Probable ATP-dependent 100.0 1.4E-35 4.8E-40 352.3 29.5 427 184-647 8-521 (696)
15 4gl2_A Interferon-induced heli 100.0 2.2E-36 7.6E-41 359.3 21.2 437 188-664 6-541 (699)
16 3h1t_A Type I site-specific re 100.0 5.1E-35 1.8E-39 340.5 24.0 355 186-640 175-559 (590)
17 1xti_A Probable ATP-dependent 100.0 9.3E-33 3.2E-37 304.5 29.9 329 188-653 29-367 (391)
18 1s2m_A Putative ATP-dependent 100.0 7.5E-32 2.6E-36 298.4 32.9 316 188-642 42-365 (400)
19 1hv8_A Putative ATP-dependent 100.0 1.8E-32 6.2E-37 299.0 27.2 312 188-643 27-346 (367)
20 2j0s_A ATP-dependent RNA helic 100.0 3.8E-32 1.3E-36 301.8 28.1 319 187-642 57-383 (410)
21 2z0m_A 337AA long hypothetical 100.0 6.6E-32 2.3E-36 291.1 25.9 314 187-652 14-334 (337)
22 2db3_A ATP-dependent RNA helic 100.0 3.6E-31 1.2E-35 296.3 28.7 316 187-641 76-406 (434)
23 3pey_A ATP-dependent RNA helic 100.0 8.2E-31 2.8E-35 288.8 27.7 316 187-641 25-355 (395)
24 3eiq_A Eukaryotic initiation f 100.0 1.4E-31 4.7E-36 297.4 21.3 320 187-642 60-387 (414)
25 2i4i_A ATP-dependent RNA helic 100.0 2.9E-30 9.9E-35 287.2 29.0 319 187-642 35-383 (417)
26 1fuu_A Yeast initiation factor 100.0 5.4E-32 1.8E-36 298.5 13.8 318 187-642 41-366 (394)
27 3fht_A ATP-dependent RNA helic 100.0 1.3E-29 4.4E-34 281.2 31.1 329 187-654 45-390 (412)
28 1oyw_A RECQ helicase, ATP-depe 100.0 7.5E-30 2.6E-34 291.4 25.1 307 185-635 21-338 (523)
29 3oiy_A Reverse gyrase helicase 100.0 6.4E-29 2.2E-33 276.4 28.8 317 187-657 19-376 (414)
30 2v1x_A ATP-dependent DNA helic 100.0 7.3E-29 2.5E-33 286.3 27.8 315 185-636 40-370 (591)
31 3sqw_A ATP-dependent RNA helic 100.0 2E-28 6.7E-33 284.2 25.4 337 187-653 41-407 (579)
32 3i5x_A ATP-dependent RNA helic 100.0 5.4E-28 1.8E-32 279.9 25.9 337 187-653 92-458 (563)
33 3fho_A ATP-dependent RNA helic 100.0 4.9E-29 1.7E-33 284.4 12.5 313 189-636 141-466 (508)
34 3fmp_B ATP-dependent RNA helic 100.0 5.7E-29 2E-33 282.3 11.6 318 186-641 111-445 (479)
35 2eyq_A TRCF, transcription-rep 100.0 1.9E-27 6.4E-32 293.1 24.2 309 187-642 601-922 (1151)
36 2xgj_A ATP-dependent RNA helic 99.9 2.6E-26 8.8E-31 279.0 31.0 353 187-643 84-500 (1010)
37 3l9o_A ATP-dependent RNA helic 99.9 2.6E-26 8.8E-31 281.4 27.0 356 187-646 182-601 (1108)
38 1gm5_A RECG; helicase, replica 99.9 2.5E-27 8.4E-32 279.4 13.7 313 189-643 368-698 (780)
39 2p6r_A Afuhel308 helicase; pro 99.9 7.5E-25 2.6E-29 259.8 27.8 323 188-646 24-392 (702)
40 2va8_A SSO2462, SKI2-type heli 99.9 1.3E-24 4.6E-29 258.3 29.9 327 188-643 29-409 (715)
41 2zj8_A DNA helicase, putative 99.9 5.4E-25 1.8E-29 261.8 24.7 322 188-646 22-391 (720)
42 4a4z_A Antiviral helicase SKI2 99.9 1.4E-24 4.8E-29 263.8 28.4 385 186-651 36-501 (997)
43 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.7E-23 5.7E-28 253.0 27.3 156 189-355 271-441 (1038)
44 4ddu_A Reverse gyrase; topoiso 99.9 4.3E-23 1.5E-27 252.9 29.7 318 187-659 76-505 (1104)
45 1gku_B Reverse gyrase, TOP-RG; 99.9 2.4E-22 8.1E-27 246.4 21.0 318 188-658 56-468 (1054)
46 2v6i_A RNA helicase; membrane, 99.9 3.1E-21 1E-25 215.1 18.2 96 529-632 170-282 (431)
47 1tf5_A Preprotein translocase 99.8 4.9E-20 1.7E-24 213.5 24.2 115 513-632 415-537 (844)
48 2wv9_A Flavivirin protease NS2 99.8 2.2E-21 7.5E-26 226.1 11.2 122 529-659 409-551 (673)
49 2jlq_A Serine protease subunit 99.8 7.5E-21 2.6E-25 213.3 15.0 95 529-631 187-301 (451)
50 2z83_A Helicase/nucleoside tri 99.8 5.1E-21 1.7E-25 215.1 12.4 105 529-642 189-313 (459)
51 1yks_A Genome polyprotein [con 99.8 2.9E-20 9.8E-25 207.8 16.9 102 529-639 176-296 (440)
52 2fsf_A Preprotein translocase 99.8 3.2E-19 1.1E-23 206.0 24.0 115 513-632 424-575 (853)
53 1nkt_A Preprotein translocase 99.8 3.5E-19 1.2E-23 205.9 22.2 115 513-632 443-609 (922)
54 2whx_A Serine protease/ntpase/ 99.8 1.9E-19 6.4E-24 208.4 19.4 295 190-656 172-493 (618)
55 4f92_B U5 small nuclear ribonu 99.8 2.8E-18 9.4E-23 217.7 29.2 319 189-642 926-1308(1724)
56 2xau_A PRE-mRNA-splicing facto 99.8 1.6E-19 5.3E-24 214.3 16.4 112 529-644 302-445 (773)
57 3rc3_A ATP-dependent RNA helic 99.8 2.2E-19 7.4E-24 208.7 15.7 108 532-641 322-444 (677)
58 1t5i_A C_terminal domain of A 99.8 3.3E-19 1.1E-23 173.0 14.1 123 512-641 15-137 (172)
59 1rif_A DAR protein, DNA helica 99.8 8.3E-20 2.8E-24 192.0 10.4 163 188-369 112-278 (282)
60 2hjv_A ATP-dependent RNA helic 99.8 4.3E-19 1.5E-23 170.7 13.9 133 512-653 19-151 (163)
61 2jgn_A DBX, DDX3, ATP-dependen 99.8 3.1E-19 1E-23 175.3 11.0 126 511-642 28-153 (185)
62 3o8b_A HCV NS3 protease/helica 99.8 5.7E-20 2E-24 211.1 6.6 102 529-645 395-517 (666)
63 4f92_B U5 small nuclear ribonu 99.8 5.7E-18 2E-22 214.8 23.2 325 187-644 77-475 (1724)
64 1fuk_A Eukaryotic initiation f 99.8 2.9E-18 1E-22 165.1 14.8 123 515-644 17-139 (165)
65 2p6n_A ATP-dependent RNA helic 99.8 1.3E-18 4.4E-23 171.7 11.5 123 512-642 39-161 (191)
66 2fz4_A DNA repair protein RAD2 99.8 6.6E-18 2.3E-22 172.6 15.6 143 184-356 88-232 (237)
67 2rb4_A ATP-dependent RNA helic 99.7 1E-17 3.4E-22 163.0 14.0 123 514-643 20-148 (175)
68 2d7d_A Uvrabc system protein B 99.7 1.2E-16 4.1E-21 186.7 25.1 121 517-643 432-557 (661)
69 3eaq_A Heat resistant RNA depe 99.7 2.7E-17 9.2E-22 165.1 16.4 124 512-642 15-138 (212)
70 2yjt_D ATP-dependent RNA helic 99.6 4.7E-19 1.6E-23 171.6 0.0 123 513-642 15-137 (170)
71 3jux_A Protein translocase sub 99.7 1.3E-15 4.3E-20 172.7 26.7 116 512-632 456-579 (822)
72 1c4o_A DNA nucleotide excision 99.7 2.6E-15 8.9E-20 175.5 29.2 124 514-643 423-551 (664)
73 2gxq_A Heat resistant RNA depe 99.7 1.5E-16 5.2E-21 158.7 16.0 157 187-353 21-186 (207)
74 1t6n_A Probable ATP-dependent 99.7 2.8E-16 9.7E-21 158.5 16.7 163 188-360 35-207 (220)
75 3b6e_A Interferon-induced heli 99.7 4.7E-17 1.6E-21 163.3 9.6 159 183-351 27-216 (216)
76 2oxc_A Probable ATP-dependent 99.7 3.7E-16 1.3E-20 158.9 16.0 154 188-352 45-208 (230)
77 2pl3_A Probable ATP-dependent 99.7 4.8E-16 1.6E-20 158.6 16.1 156 187-353 45-213 (236)
78 3i32_A Heat resistant RNA depe 99.7 2.8E-16 9.5E-21 165.5 14.7 124 513-643 13-136 (300)
79 1q0u_A Bstdead; DEAD protein, 99.7 3.6E-16 1.2E-20 157.7 13.4 162 187-359 24-197 (219)
80 3ber_A Probable ATP-dependent 99.7 1.2E-15 4.1E-20 157.2 16.2 157 187-353 63-228 (249)
81 1vec_A ATP-dependent RNA helic 99.7 1.1E-15 3.7E-20 152.4 15.2 157 187-353 23-188 (206)
82 1qde_A EIF4A, translation init 99.6 1E-15 3.4E-20 154.8 14.7 156 187-353 34-197 (224)
83 1wrb_A DJVLGB; RNA helicase, D 99.6 3.8E-15 1.3E-19 153.6 15.7 156 188-353 44-220 (253)
84 3bor_A Human initiation factor 99.6 3.8E-15 1.3E-19 152.2 13.9 157 188-353 51-215 (237)
85 3iuy_A Probable ATP-dependent 99.6 2.2E-14 7.5E-19 145.4 15.1 156 187-352 40-208 (228)
86 3dkp_A Probable ATP-dependent 99.5 8.5E-14 2.9E-18 142.7 16.5 156 188-352 50-220 (245)
87 3ly5_A ATP-dependent RNA helic 99.5 5.7E-14 1.9E-18 145.7 14.5 157 187-353 74-243 (262)
88 3fe2_A Probable ATP-dependent 99.5 1.3E-13 4.6E-18 141.1 16.0 156 187-352 49-217 (242)
89 2ipc_A Preprotein translocase 99.4 1.6E-11 5.6E-16 141.8 27.2 148 186-363 76-238 (997)
90 2vl7_A XPD; helicase, unknown 99.4 1E-11 3.5E-16 142.1 22.5 81 528-615 382-466 (540)
91 3fmo_B ATP-dependent RNA helic 99.4 1.3E-12 4.5E-17 138.1 13.7 157 186-353 111-278 (300)
92 3llm_A ATP-dependent RNA helic 99.0 1.7E-09 5.8E-14 109.9 10.3 150 188-353 60-219 (235)
93 3crv_A XPD/RAD3 related DNA he 98.8 1.9E-08 6.6E-13 115.2 11.7 136 188-328 2-187 (551)
94 4a15_A XPD helicase, ATP-depen 98.1 2.7E-06 9.3E-11 98.4 7.4 81 189-271 3-87 (620)
95 3upu_A ATP-dependent DNA helic 97.4 0.00068 2.3E-08 75.5 12.1 145 186-355 22-167 (459)
96 4b3f_X DNA-binding protein smu 97.4 0.00025 8.5E-09 82.6 8.6 70 187-261 187-257 (646)
97 3e1s_A Exodeoxyribonuclease V, 97.3 0.0011 3.6E-08 75.9 12.9 132 187-355 187-318 (574)
98 2gk6_A Regulator of nonsense t 97.3 0.00068 2.3E-08 78.5 11.3 154 188-355 179-376 (624)
99 1w36_D RECD, exodeoxyribonucle 97.2 0.0015 5E-08 75.4 11.8 147 191-357 151-303 (608)
100 2b8t_A Thymidine kinase; deoxy 97.1 0.0025 8.6E-08 63.3 11.5 114 206-351 10-124 (223)
101 2wjy_A Regulator of nonsense t 97.1 0.0012 4.2E-08 78.2 10.1 154 188-355 355-552 (800)
102 2xzl_A ATP-dependent helicase 97.0 0.0021 7E-08 76.3 10.7 153 188-355 359-554 (802)
103 3lfu_A DNA helicase II; SF1 he 96.6 0.014 4.7E-07 67.8 13.9 66 189-260 9-77 (647)
104 2o0j_A Terminase, DNA packagin 96.3 0.028 9.7E-07 60.4 13.0 154 188-364 162-323 (385)
105 2orw_A Thymidine kinase; TMTK, 96.3 0.012 4.1E-07 56.6 9.2 36 210-247 5-40 (184)
106 2j9r_A Thymidine kinase; TK1, 96.1 0.031 1E-06 54.8 10.9 35 212-248 32-66 (214)
107 3cpe_A Terminase, DNA packagin 96.0 0.06 2.1E-06 61.7 14.6 147 188-355 162-316 (592)
108 1xx6_A Thymidine kinase; NESG, 95.9 0.017 5.9E-07 55.8 8.1 35 211-247 11-45 (191)
109 3syl_A Protein CBBX; photosynt 95.9 0.015 5.1E-07 60.6 8.3 38 209-246 68-107 (309)
110 1a5t_A Delta prime, HOLB; zinc 95.9 0.045 1.5E-06 57.9 11.9 46 190-235 3-51 (334)
111 2chg_A Replication factor C sm 95.3 0.11 3.9E-06 50.2 11.5 41 313-353 101-142 (226)
112 1uaa_A REP helicase, protein ( 95.2 0.085 2.9E-06 61.4 11.9 67 189-261 2-71 (673)
113 2orv_A Thymidine kinase; TP4A 95.1 0.13 4.4E-06 50.9 10.9 36 211-248 22-57 (234)
114 1l8q_A Chromosomal replication 94.9 0.16 5.5E-06 53.1 12.2 39 209-249 38-76 (324)
115 4a15_A XPD helicase, ATP-depen 94.8 0.06 2E-06 62.0 9.2 100 529-635 447-579 (620)
116 3vkw_A Replicase large subunit 94.8 0.04 1.4E-06 60.1 7.1 108 211-355 164-272 (446)
117 2qby_B CDC6 homolog 3, cell di 94.3 0.1 3.5E-06 55.9 8.9 44 191-234 25-71 (384)
118 2z4s_A Chromosomal replication 94.2 0.25 8.6E-06 54.2 12.0 40 209-248 131-170 (440)
119 2p65_A Hypothetical protein PF 94.1 0.24 8.3E-06 46.5 10.2 27 208-234 43-69 (187)
120 3n70_A Transport activator; si 94.0 0.11 3.8E-06 47.4 7.3 38 315-352 77-115 (145)
121 3e2i_A Thymidine kinase; Zn-bi 94.0 0.28 9.7E-06 47.9 10.3 35 211-247 31-65 (219)
122 1w4r_A Thymidine kinase; type 93.9 0.15 5.2E-06 49.0 8.3 35 211-247 23-57 (195)
123 1jbk_A CLPB protein; beta barr 93.7 0.71 2.4E-05 43.2 12.8 27 208-234 43-69 (195)
124 1iqp_A RFCS; clamp loader, ext 93.4 0.37 1.3E-05 50.0 11.2 42 313-354 109-151 (327)
125 3u61_B DNA polymerase accessor 93.2 0.2 6.8E-06 52.4 8.5 41 314-354 105-147 (324)
126 1njg_A DNA polymerase III subu 93.2 0.67 2.3E-05 45.2 12.0 44 191-234 28-71 (250)
127 2v1u_A Cell division control p 93.1 0.34 1.2E-05 51.6 10.4 28 207-234 43-70 (387)
128 3eie_A Vacuolar protein sortin 92.9 0.22 7.6E-06 52.1 8.5 34 208-246 51-84 (322)
129 2gno_A DNA polymerase III, gam 92.9 0.34 1.2E-05 50.3 9.7 38 194-231 2-41 (305)
130 3uk6_A RUVB-like 2; hexameric 92.6 0.33 1.1E-05 51.6 9.3 53 191-246 49-105 (368)
131 3ec2_A DNA replication protein 92.3 1.6 5.4E-05 41.0 12.8 43 191-233 16-63 (180)
132 2qp9_X Vacuolar protein sortin 92.2 0.22 7.7E-06 52.9 7.4 25 208-232 84-108 (355)
133 1sxj_D Activator 1 41 kDa subu 92.2 0.25 8.7E-06 52.0 7.8 40 314-353 133-173 (353)
134 1fnn_A CDC6P, cell division co 92.2 1.7 5.7E-05 46.2 14.4 26 210-235 46-71 (389)
135 3bos_A Putative DNA replicatio 91.9 0.27 9.2E-06 48.4 7.1 49 195-245 37-87 (242)
136 3h4m_A Proteasome-activating n 91.9 0.29 1E-05 49.9 7.6 25 207-231 50-74 (285)
137 4b4t_J 26S protease regulatory 91.8 0.4 1.4E-05 51.6 8.7 45 207-256 181-225 (405)
138 1sxj_B Activator 1 37 kDa subu 91.5 0.39 1.3E-05 49.8 8.1 41 314-354 107-148 (323)
139 1jr3_A DNA polymerase III subu 91.4 1.3 4.4E-05 46.8 12.4 39 314-352 119-158 (373)
140 3co5_A Putative two-component 91.1 0.16 5.5E-06 46.2 4.1 23 206-228 25-47 (143)
141 2zan_A Vacuolar protein sortin 90.9 1.2 4.1E-05 48.8 11.7 41 208-252 167-207 (444)
142 2bjv_A PSP operon transcriptio 90.8 0.47 1.6E-05 47.9 7.8 41 205-247 26-66 (265)
143 2q6t_A DNAB replication FORK h 90.8 0.3 1E-05 53.7 6.6 126 197-328 189-324 (444)
144 1ofh_A ATP-dependent HSL prote 90.7 1.4 4.8E-05 45.1 11.6 25 208-232 50-74 (310)
145 2r6a_A DNAB helicase, replicat 90.7 0.31 1.1E-05 53.7 6.7 127 197-328 192-327 (454)
146 3vfd_A Spastin; ATPase, microt 90.4 2 6.8E-05 46.0 12.7 39 208-251 148-186 (389)
147 1xwi_A SKD1 protein; VPS4B, AA 90.4 0.28 9.7E-06 51.4 5.7 37 208-248 45-81 (322)
148 3te6_A Regulatory protein SIR3 90.2 1.5 5.3E-05 45.5 11.1 45 191-235 25-72 (318)
149 4a1f_A DNAB helicase, replicat 90.0 0.23 7.8E-06 52.4 4.6 127 197-328 35-170 (338)
150 2qz4_A Paraplegin; AAA+, SPG7, 89.9 1.2 4.2E-05 44.3 10.0 36 208-248 39-74 (262)
151 1sxj_C Activator 1 40 kDa subu 89.7 0.94 3.2E-05 47.6 9.2 40 195-234 31-72 (340)
152 3t15_A Ribulose bisphosphate c 89.6 0.51 1.7E-05 48.6 6.9 35 209-248 37-71 (293)
153 1ojl_A Transcriptional regulat 89.4 1.4 4.7E-05 45.6 10.1 42 206-249 23-64 (304)
154 2chq_A Replication factor C sm 89.3 0.23 7.8E-06 51.4 4.0 25 210-234 40-64 (319)
155 1sxj_E Activator 1 40 kDa subu 88.4 2.2 7.5E-05 44.7 11.1 49 314-362 134-183 (354)
156 1xp8_A RECA protein, recombina 88.4 1.3 4.4E-05 47.2 9.1 102 197-327 61-165 (366)
157 2qby_A CDC6 homolog 1, cell di 88.3 0.82 2.8E-05 48.5 7.7 28 208-235 45-72 (386)
158 3d8b_A Fidgetin-like protein 1 88.0 0.85 2.9E-05 48.4 7.5 36 207-247 116-151 (357)
159 1g5t_A COB(I)alamin adenosyltr 88.0 1.7 5.7E-05 41.8 8.7 137 208-366 28-173 (196)
160 4b4t_H 26S protease regulatory 87.5 1 3.5E-05 49.2 7.6 43 207-254 242-284 (467)
161 3dm5_A SRP54, signal recogniti 86.6 3.5 0.00012 44.9 11.3 34 211-246 103-136 (443)
162 2zts_A Putative uncharacterize 86.6 0.43 1.5E-05 47.4 3.9 53 208-261 30-82 (251)
163 3b9p_A CG5977-PA, isoform A; A 86.6 1.1 3.8E-05 45.8 7.2 25 208-232 54-78 (297)
164 2dr3_A UPF0273 protein PH0284; 86.6 3.6 0.00012 40.4 10.8 51 207-259 22-72 (247)
165 3bh0_A DNAB-like replicative h 86.6 2.8 9.4E-05 43.5 10.3 60 197-258 57-116 (315)
166 3bgw_A DNAB-like replicative h 86.4 3.7 0.00013 44.8 11.6 128 196-328 185-324 (444)
167 2w0m_A SSO2452; RECA, SSPF, un 86.3 5 0.00017 38.8 11.6 108 206-327 21-136 (235)
168 4b4t_I 26S protease regulatory 86.2 1.1 3.8E-05 48.5 7.0 42 208-254 216-257 (437)
169 3k1j_A LON protease, ATP-depen 86.2 2.7 9.4E-05 47.9 10.8 55 198-252 50-116 (604)
170 3cf0_A Transitional endoplasmi 86.1 1.5 5.1E-05 45.2 7.9 26 207-232 48-73 (301)
171 1w5s_A Origin recognition comp 86.1 1.8 6.1E-05 46.4 8.8 44 191-234 27-78 (412)
172 3pvs_A Replication-associated 85.3 1.1 3.9E-05 49.0 6.8 23 210-232 52-74 (447)
173 3kl4_A SRP54, signal recogniti 85.1 2.9 0.0001 45.4 9.8 33 211-245 100-132 (433)
174 4b4t_L 26S protease subunit RP 85.1 0.72 2.5E-05 50.2 5.0 42 208-254 215-256 (437)
175 2zr9_A Protein RECA, recombina 85.0 2.5 8.5E-05 44.6 9.0 55 197-253 48-104 (349)
176 1gm5_A RECG; helicase, replica 84.8 3.1 0.0001 48.9 10.5 97 512-610 399-499 (780)
177 4b4t_M 26S protease regulatory 84.8 0.62 2.1E-05 50.7 4.3 42 208-254 215-256 (434)
178 1sxj_A Activator 1 95 kDa subu 84.7 3.1 0.0001 46.5 10.1 24 209-232 78-101 (516)
179 1hqc_A RUVB; extended AAA-ATPa 84.5 8.9 0.0003 39.3 13.1 25 208-232 38-62 (324)
180 4fcw_A Chaperone protein CLPB; 84.1 1.7 5.7E-05 44.7 7.2 34 210-245 49-82 (311)
181 1u94_A RECA protein, recombina 83.4 3.3 0.00011 43.8 9.1 102 197-327 50-154 (356)
182 3hu3_A Transitional endoplasmi 83.4 0.8 2.7E-05 50.9 4.5 25 207-231 237-261 (489)
183 2cvh_A DNA repair and recombin 83.4 2.6 8.9E-05 40.6 7.8 56 197-257 8-66 (220)
184 1r6b_X CLPA protein; AAA+, N-t 82.9 4.6 0.00016 47.3 11.1 29 207-235 206-234 (758)
185 2qen_A Walker-type ATPase; unk 81.5 3.8 0.00013 42.4 8.8 38 191-231 17-54 (350)
186 3hjh_A Transcription-repair-co 81.4 2.9 9.9E-05 46.2 8.0 56 208-269 14-70 (483)
187 1d2n_A N-ethylmaleimide-sensit 81.2 2.6 8.7E-05 42.5 7.0 23 209-231 65-87 (272)
188 1qvr_A CLPB protein; coiled co 81.0 3.9 0.00013 48.8 9.6 27 208-234 191-217 (854)
189 4b4t_K 26S protease regulatory 80.9 1.6 5.6E-05 47.3 5.6 41 208-253 206-246 (428)
190 2w58_A DNAI, primosome compone 80.8 3.2 0.00011 39.5 7.3 35 209-245 55-89 (202)
191 2ce7_A Cell division protein F 80.7 6.2 0.00021 43.4 10.3 34 208-246 49-82 (476)
192 3pfi_A Holliday junction ATP-d 79.5 20 0.00068 36.9 13.6 23 209-231 56-78 (338)
193 2kjq_A DNAA-related protein; s 79.3 3.4 0.00012 37.6 6.6 29 207-235 35-63 (149)
194 3crv_A XPD/RAD3 related DNA he 78.6 9.3 0.00032 42.9 11.3 95 519-624 381-484 (551)
195 1pjr_A PCRA; DNA repair, DNA r 77.7 2.9 0.0001 48.8 6.9 66 189-260 11-79 (724)
196 3oiy_A Reverse gyrase helicase 77.2 7.8 0.00027 41.5 9.8 94 512-607 46-145 (414)
197 3io5_A Recombination and repai 76.8 5.3 0.00018 41.4 7.6 42 211-252 31-72 (333)
198 2z43_A DNA repair and recombin 76.5 12 0.00041 38.7 10.6 53 197-249 95-152 (324)
199 3pxi_A Negative regulator of g 74.9 2.7 9.1E-05 49.5 5.6 33 210-244 523-555 (758)
200 1n0w_A DNA repair protein RAD5 74.3 18 0.00061 35.0 10.8 51 198-248 13-68 (243)
201 2px0_A Flagellar biosynthesis 72.7 14 0.00048 37.7 9.8 37 208-246 105-142 (296)
202 2qgz_A Helicase loader, putati 72.5 6.1 0.00021 40.7 7.0 36 208-245 152-188 (308)
203 3cmu_A Protein RECA, recombina 72.4 7.3 0.00025 50.2 8.9 93 206-327 1425-1518(2050)
204 3hr8_A Protein RECA; alpha and 72.4 10 0.00036 39.9 8.9 43 208-252 61-103 (356)
205 1ls1_A Signal recognition part 71.4 15 0.00053 37.4 9.8 34 211-246 101-134 (295)
206 4dzz_A Plasmid partitioning pr 71.3 34 0.0011 32.0 11.7 38 215-254 9-48 (206)
207 1zu4_A FTSY; GTPase, signal re 70.9 21 0.00073 36.8 10.8 34 211-246 108-141 (320)
208 1vma_A Cell division protein F 70.6 11 0.00039 38.7 8.5 34 211-246 107-140 (306)
209 3u4q_A ATP-dependent helicase/ 70.1 4 0.00014 50.8 5.8 59 186-250 7-69 (1232)
210 2eyq_A TRCF, transcription-rep 68.3 19 0.00064 44.3 11.1 94 512-607 634-731 (1151)
211 3u4q_B ATP-dependent helicase/ 68.1 10 0.00035 46.8 8.9 48 212-260 6-54 (1166)
212 2zpa_A Uncharacterized protein 67.7 10 0.00034 43.4 7.9 54 188-248 174-227 (671)
213 1q57_A DNA primase/helicase; d 67.5 21 0.00071 39.4 10.5 59 198-257 232-290 (503)
214 2xxa_A Signal recognition part 65.5 7.9 0.00027 42.0 6.3 35 211-246 103-137 (433)
215 4ddu_A Reverse gyrase; topoiso 65.5 16 0.00055 44.7 9.6 95 511-607 102-202 (1104)
216 3cmw_A Protein RECA, recombina 64.8 14 0.00047 47.1 8.9 100 197-327 719-823 (1706)
217 2ffh_A Protein (FFH); SRP54, s 61.7 33 0.0011 37.0 10.2 34 211-246 101-134 (425)
218 1v5w_A DMC1, meiotic recombina 61.6 35 0.0012 35.5 10.3 53 197-249 110-167 (343)
219 2vhj_A Ntpase P4, P4; non- hyd 61.2 14 0.00046 38.4 6.8 25 207-231 122-146 (331)
220 3cf2_A TER ATPase, transitiona 61.1 8 0.00027 45.4 5.6 41 208-253 511-551 (806)
221 3cmu_A Protein RECA, recombina 61.1 19 0.00064 46.6 9.2 101 197-328 719-824 (2050)
222 2dhr_A FTSH; AAA+ protein, hex 58.7 22 0.00077 39.2 8.5 23 209-231 65-87 (499)
223 2r8r_A Sensor protein; KDPD, P 58.2 9 0.00031 37.6 4.6 45 210-254 8-52 (228)
224 3nhm_A Response regulator; pro 57.7 44 0.0015 28.3 8.8 101 522-628 19-123 (133)
225 2c9o_A RUVB-like 1; hexameric 56.8 8.5 0.00029 42.0 4.7 58 192-252 43-104 (456)
226 3a10_A Response regulator; pho 56.5 27 0.00091 28.9 7.0 90 529-625 24-115 (116)
227 3cg4_A Response regulator rece 56.2 66 0.0022 27.5 9.9 74 553-626 50-126 (142)
228 1u6t_A SH3 domain-binding glut 55.8 18 0.00062 31.6 5.6 45 533-577 2-53 (121)
229 1t6n_A Probable ATP-dependent 54.5 93 0.0032 29.3 11.4 90 512-607 61-164 (220)
230 3gx8_A Monothiol glutaredoxin- 54.1 60 0.002 28.0 8.9 58 530-589 15-81 (121)
231 3of5_A Dethiobiotin synthetase 53.8 10 0.00034 37.2 4.1 26 212-237 9-34 (228)
232 1wp9_A ATP-dependent RNA helic 53.7 96 0.0033 32.9 12.7 108 512-626 33-152 (494)
233 3sxu_A DNA polymerase III subu 53.3 65 0.0022 29.1 9.2 80 514-612 23-106 (150)
234 2i1q_A DNA repair and recombin 52.8 33 0.0011 35.1 8.3 53 197-249 86-153 (322)
235 3fe2_A Probable ATP-dependent 52.7 90 0.0031 30.1 11.2 89 512-607 76-182 (242)
236 3qxc_A Dethiobiotin synthetase 52.7 11 0.00037 37.4 4.2 26 212-237 26-51 (242)
237 2j48_A Two-component sensor ki 52.4 16 0.00054 30.2 4.8 89 529-625 24-116 (119)
238 2r44_A Uncharacterized protein 52.3 9.4 0.00032 39.4 3.9 35 198-232 36-70 (331)
239 3ipz_A Monothiol glutaredoxin- 51.8 48 0.0016 27.9 7.8 66 521-589 9-80 (109)
240 1j8m_F SRP54, signal recogniti 51.7 60 0.002 33.0 9.8 33 212-246 102-134 (297)
241 3i42_A Response regulator rece 51.7 23 0.00078 30.0 5.8 96 529-630 26-125 (127)
242 3zyw_A Glutaredoxin-3; metal b 51.5 50 0.0017 28.0 7.8 66 521-589 7-78 (111)
243 2j37_W Signal recognition part 51.2 55 0.0019 36.1 10.0 34 211-246 104-137 (504)
244 3fgn_A Dethiobiotin synthetase 50.2 12 0.00043 37.2 4.2 26 212-237 31-56 (251)
245 3cf2_A TER ATPase, transitiona 50.0 18 0.00062 42.4 6.1 23 208-230 238-260 (806)
246 3ber_A Probable ATP-dependent 49.1 1.3E+02 0.0043 29.3 11.6 89 512-607 90-192 (249)
247 1byi_A Dethiobiotin synthase; 47.9 20 0.00067 34.4 5.2 33 212-246 6-38 (224)
248 2oxc_A Probable ATP-dependent 47.5 77 0.0026 30.3 9.6 88 512-607 71-172 (230)
249 2ehv_A Hypothetical protein PH 47.4 16 0.00055 35.5 4.6 48 206-255 28-76 (251)
250 3g5j_A Putative ATP/GTP bindin 47.1 21 0.00072 31.0 4.9 51 515-566 74-126 (134)
251 3grc_A Sensor protein, kinase; 46.9 44 0.0015 28.7 7.1 92 529-627 29-127 (140)
252 3hws_A ATP-dependent CLP prote 46.8 26 0.00088 36.7 6.3 34 208-246 51-84 (363)
253 2yan_A Glutaredoxin-3; oxidore 46.8 77 0.0026 26.1 8.2 65 521-588 8-78 (105)
254 1gku_B Reverse gyrase, TOP-RG; 46.6 46 0.0016 40.5 9.2 92 512-607 81-181 (1054)
255 2l82_A Designed protein OR32; 46.3 65 0.0022 27.0 7.1 46 533-578 5-50 (162)
256 2wul_A Glutaredoxin related pr 44.8 96 0.0033 26.7 8.6 64 530-594 19-89 (118)
257 3eqz_A Response regulator; str 44.3 52 0.0018 27.8 7.0 76 555-630 47-128 (135)
258 3ly5_A ATP-dependent RNA helic 43.9 1.4E+02 0.0048 29.2 11.0 89 512-607 101-207 (262)
259 2wem_A Glutaredoxin-related pr 43.8 98 0.0033 26.5 8.5 59 530-590 19-84 (118)
260 1tue_A Replication protein E1; 43.8 19 0.00065 34.7 4.2 23 210-232 60-82 (212)
261 3m6a_A ATP-dependent protease 43.7 51 0.0017 36.7 8.4 25 208-232 108-132 (543)
262 1lv7_A FTSH; alpha/beta domain 43.3 42 0.0014 32.9 7.0 25 208-232 45-69 (257)
263 2gxq_A Heat resistant RNA depe 43.1 1.1E+02 0.0037 28.4 9.7 89 512-607 48-150 (207)
264 3cmw_A Protein RECA, recombina 42.8 48 0.0016 42.2 8.6 89 211-327 1434-1522(1706)
265 3gk5_A Uncharacterized rhodane 42.6 16 0.00056 30.8 3.3 38 528-565 53-90 (108)
266 2pl3_A Probable ATP-dependent 42.3 1.3E+02 0.0043 28.7 10.3 88 512-607 72-177 (236)
267 1xti_A Probable ATP-dependent 41.8 1.4E+02 0.0049 30.7 11.4 91 512-607 55-158 (391)
268 3kjh_A CO dehydrogenase/acetyl 41.3 13 0.00046 36.1 2.9 30 214-245 6-35 (254)
269 2qxy_A Response regulator; reg 40.9 34 0.0012 29.5 5.3 94 529-630 27-124 (142)
270 3lte_A Response regulator; str 40.9 28 0.00097 29.5 4.7 27 531-557 7-33 (132)
271 3iuy_A Probable ATP-dependent 40.8 94 0.0032 29.5 9.0 89 512-607 67-173 (228)
272 3n53_A Response regulator rece 38.9 1.8E+02 0.006 24.6 10.8 97 524-626 20-121 (140)
273 2v1x_A ATP-dependent DNA helic 38.9 75 0.0026 35.7 8.9 77 512-591 69-145 (591)
274 3cwq_A Para family chromosome 38.8 32 0.0011 32.8 5.0 42 212-256 5-48 (209)
275 2rdm_A Response regulator rece 38.7 83 0.0028 26.3 7.5 93 529-630 28-126 (132)
276 2oze_A ORF delta'; para, walke 38.4 52 0.0018 33.0 6.9 38 215-254 44-83 (298)
277 1wik_A Thioredoxin-like protei 38.1 90 0.0031 26.0 7.3 57 530-588 14-76 (109)
278 1g3q_A MIND ATPase, cell divis 38.1 29 0.001 33.4 4.8 33 212-246 7-39 (237)
279 4dad_A Putative pilus assembly 38.0 89 0.003 26.9 7.7 95 531-628 46-142 (146)
280 1ypw_A Transitional endoplasmi 37.9 31 0.0011 40.6 5.7 24 207-230 237-260 (806)
281 4a2p_A RIG-I, retinoic acid in 37.1 1E+02 0.0035 33.7 9.7 90 512-607 32-136 (556)
282 2r2a_A Uncharacterized protein 37.1 12 0.00042 35.7 1.7 36 317-352 90-132 (199)
283 2b4a_A BH3024; flavodoxin-like 37.0 1.5E+02 0.0052 25.0 9.0 91 529-626 38-130 (138)
284 2wci_A Glutaredoxin-4; redox-a 37.0 91 0.0031 27.5 7.4 56 531-588 35-96 (135)
285 1cp2_A CP2, nitrogenase iron p 36.9 24 0.00083 34.9 4.0 29 214-244 7-35 (269)
286 3hix_A ALR3790 protein; rhodan 36.5 31 0.0011 28.8 4.0 38 528-565 50-88 (106)
287 1qde_A EIF4A, translation init 36.4 79 0.0027 29.9 7.6 88 512-607 61-161 (224)
288 2rjn_A Response regulator rece 36.3 81 0.0028 27.5 7.2 29 530-558 7-35 (154)
289 1hyq_A MIND, cell division inh 36.1 37 0.0013 33.4 5.2 33 212-246 7-39 (263)
290 4ag6_A VIRB4 ATPase, type IV s 35.7 53 0.0018 34.6 6.7 47 207-255 34-80 (392)
291 3k9g_A PF-32 protein; ssgcid, 35.6 23 0.00079 35.1 3.6 31 212-245 32-62 (267)
292 1um8_A ATP-dependent CLP prote 35.1 50 0.0017 34.6 6.3 25 208-232 72-96 (376)
293 3q9l_A Septum site-determining 35.0 35 0.0012 33.4 4.8 33 212-246 7-39 (260)
294 2oap_1 GSPE-2, type II secreti 34.8 35 0.0012 37.8 5.1 39 190-231 245-283 (511)
295 3nbx_X ATPase RAVA; AAA+ ATPas 34.8 23 0.00078 39.1 3.6 32 201-232 34-65 (500)
296 3kto_A Response regulator rece 34.7 32 0.0011 29.6 4.0 72 554-628 50-127 (136)
297 3foj_A Uncharacterized protein 34.4 26 0.00089 28.9 3.2 37 529-565 55-91 (100)
298 3fwy_A Light-independent proto 34.0 29 0.00098 35.8 4.0 30 214-245 54-83 (314)
299 3end_A Light-independent proto 33.6 29 0.00099 35.2 4.0 30 213-244 46-75 (307)
300 2r62_A Cell division protease 33.5 33 0.0011 33.9 4.3 25 208-232 44-68 (268)
301 2afh_E Nitrogenase iron protei 33.5 29 0.001 34.8 4.0 29 214-244 8-36 (289)
302 3lda_A DNA repair protein RAD5 33.2 2E+02 0.0067 30.5 10.6 53 197-249 166-223 (400)
303 1p9r_A General secretion pathw 33.1 59 0.002 34.9 6.5 52 189-244 150-201 (418)
304 1oyw_A RECQ helicase, ATP-depe 33.1 1.2E+02 0.0041 33.4 9.3 77 512-593 50-126 (523)
305 2ph1_A Nucleotide-binding prot 32.4 40 0.0014 33.3 4.7 32 212-245 23-54 (262)
306 1ry6_A Internal kinesin; kines 32.4 29 0.00099 36.5 3.7 25 203-227 78-104 (360)
307 4ehx_A Tetraacyldisaccharide 4 31.7 1.1E+02 0.0036 31.4 7.9 19 217-235 47-65 (315)
308 3h5i_A Response regulator/sens 31.2 2.3E+02 0.0078 23.9 9.3 17 609-625 106-122 (140)
309 1t1v_A SH3BGRL3, SH3 domain-bi 31.2 88 0.003 25.1 5.9 57 532-588 3-66 (93)
310 1gmx_A GLPE protein; transfera 31.2 56 0.0019 27.2 4.8 38 528-565 56-94 (108)
311 1wv9_A Rhodanese homolog TT165 31.2 35 0.0012 27.7 3.4 35 531-565 54-88 (94)
312 1e9r_A Conjugal transfer prote 30.9 38 0.0013 36.4 4.6 41 208-250 53-93 (437)
313 3pxg_A Negative regulator of g 30.8 58 0.002 35.4 6.1 29 207-235 200-228 (468)
314 1z6t_A APAF-1, apoptotic prote 30.6 1.3E+02 0.0045 33.3 9.3 46 298-351 219-265 (591)
315 3iwh_A Rhodanese-like domain p 30.3 28 0.00096 29.2 2.7 37 529-565 55-91 (103)
316 2yvu_A Probable adenylyl-sulfa 30.1 53 0.0018 30.3 4.9 34 209-244 14-47 (186)
317 3eme_A Rhodanese-like domain p 29.7 38 0.0013 28.0 3.4 37 529-565 55-91 (103)
318 1kht_A Adenylate kinase; phosp 29.5 48 0.0016 30.4 4.5 29 208-236 3-31 (192)
319 2fsx_A RV0390, COG0607: rhodan 29.5 58 0.002 29.0 4.9 38 528-565 78-116 (148)
320 3cio_A ETK, tyrosine-protein k 29.1 54 0.0019 33.2 5.2 32 212-245 109-140 (299)
321 3ea0_A ATPase, para family; al 28.9 53 0.0018 31.6 4.9 33 212-245 9-41 (245)
322 1mvo_A PHOP response regulator 28.6 1.1E+02 0.0037 25.8 6.5 91 530-626 27-120 (136)
323 1tmy_A CHEY protein, TMY; chem 28.6 59 0.002 26.8 4.6 90 529-625 25-119 (120)
324 1dbw_A Transcriptional regulat 28.6 79 0.0027 26.4 5.5 72 552-626 45-120 (126)
325 1nlf_A Regulatory protein REPA 28.5 1.1E+02 0.0037 30.3 7.3 52 206-258 28-88 (279)
326 3zq6_A Putative arsenical pump 28.4 55 0.0019 33.6 5.1 33 212-246 18-50 (324)
327 1qkk_A DCTD, C4-dicarboxylate 28.3 55 0.0019 28.7 4.6 28 531-558 4-31 (155)
328 2jtq_A Phage shock protein E; 28.2 79 0.0027 24.8 5.0 37 528-565 39-76 (85)
329 3tbk_A RIG-I helicase domain; 27.9 99 0.0034 33.8 7.5 58 512-569 29-95 (555)
330 2lqo_A Putative glutaredoxin R 27.8 1.3E+02 0.0045 24.4 6.4 57 531-588 4-61 (92)
331 3trf_A Shikimate kinase, SK; a 27.7 40 0.0014 30.9 3.6 25 208-232 5-29 (185)
332 2gkg_A Response regulator homo 27.3 73 0.0025 26.3 5.0 25 532-556 7-31 (127)
333 4a2q_A RIG-I, retinoic acid in 27.3 1.2E+02 0.0042 35.3 8.5 59 512-570 273-340 (797)
334 3ug7_A Arsenical pump-driving 27.2 74 0.0025 33.1 5.9 34 211-246 29-62 (349)
335 3vaa_A Shikimate kinase, SK; s 27.2 42 0.0014 31.5 3.7 26 207-232 24-49 (199)
336 1wrb_A DJVLGB; RNA helicase, D 27.0 3.4E+02 0.012 25.9 10.6 89 512-607 70-180 (253)
337 2yhs_A FTSY, cell division pro 27.0 5.4E+02 0.018 28.1 12.8 31 212-244 297-327 (503)
338 3pg5_A Uncharacterized protein 26.9 35 0.0012 35.8 3.3 28 215-244 9-36 (361)
339 3bfv_A CAPA1, CAPB2, membrane 26.5 59 0.002 32.4 4.8 29 215-245 90-118 (271)
340 1dc7_A NTRC, nitrogen regulati 26.5 62 0.0021 26.7 4.4 96 529-628 26-122 (124)
341 3iij_A Coilin-interacting nucl 26.4 52 0.0018 30.1 4.1 25 208-232 11-35 (180)
342 2rb4_A ATP-dependent RNA helic 26.3 73 0.0025 29.0 5.1 64 229-298 25-91 (175)
343 3lua_A Response regulator rece 26.0 60 0.0021 27.8 4.3 94 529-629 28-129 (140)
344 3la6_A Tyrosine-protein kinase 25.8 69 0.0023 32.3 5.2 32 212-245 97-128 (286)
345 3hv2_A Response regulator/HD d 25.8 66 0.0023 28.1 4.6 29 530-558 14-42 (153)
346 3f6c_A Positive transcription 25.6 90 0.0031 26.2 5.3 94 529-628 24-121 (134)
347 3nhv_A BH2092 protein; alpha-b 25.5 45 0.0015 29.7 3.3 37 529-565 71-109 (144)
348 3kcn_A Adenylate cyclase homol 25.4 1.8E+02 0.0063 25.0 7.6 35 555-589 49-83 (151)
349 2db3_A ATP-dependent RNA helic 25.4 2.8E+02 0.0095 29.4 10.3 89 512-607 103-209 (434)
350 2xj4_A MIPZ; replication, cell 25.1 53 0.0018 32.9 4.2 40 214-255 11-53 (286)
351 3bor_A Human initiation factor 25.1 2.3E+02 0.0079 26.9 8.8 90 512-607 77-179 (237)
352 2ius_A DNA translocase FTSK; n 25.0 92 0.0031 34.3 6.3 42 207-248 166-209 (512)
353 3dmn_A Putative DNA helicase; 25.0 3.2E+02 0.011 24.8 9.3 66 529-612 60-125 (174)
354 3dmp_A Uracil phosphoribosyltr 24.9 1.4E+02 0.0048 28.7 6.9 58 208-268 129-188 (217)
355 1ys7_A Transcriptional regulat 24.8 2.4E+02 0.0081 26.4 8.8 92 529-627 30-125 (233)
356 1wcv_1 SOJ, segregation protei 24.8 45 0.0015 32.8 3.5 30 214-245 13-42 (257)
357 3kht_A Response regulator; PSI 24.6 75 0.0026 27.3 4.7 26 531-556 6-31 (144)
358 1hv8_A Putative ATP-dependent 24.4 3.5E+02 0.012 27.1 10.7 88 512-607 54-153 (367)
359 1u0j_A DNA replication protein 24.4 39 0.0013 33.9 2.9 22 211-232 107-128 (267)
360 2woo_A ATPase GET3; tail-ancho 24.4 72 0.0025 32.8 5.1 34 211-246 22-55 (329)
361 3cnb_A DNA-binding response re 24.4 1.6E+02 0.0055 24.8 6.9 95 529-629 32-132 (143)
362 3ez2_A Plasmid partition prote 24.3 45 0.0015 35.3 3.6 33 212-244 113-149 (398)
363 2hjv_A ATP-dependent RNA helic 24.1 70 0.0024 28.8 4.4 56 237-298 34-92 (163)
364 2c95_A Adenylate kinase 1; tra 24.1 65 0.0022 29.7 4.3 26 207-232 8-33 (196)
365 2hhg_A Hypothetical protein RP 23.6 60 0.002 28.4 3.7 38 528-565 84-122 (139)
366 3flh_A Uncharacterized protein 23.4 43 0.0015 28.8 2.7 37 529-565 70-108 (124)
367 1t5i_A C_terminal domain of A 23.2 91 0.0031 28.4 5.1 56 237-298 30-88 (172)
368 1vec_A ATP-dependent RNA helic 23.2 4.2E+02 0.015 24.0 10.3 89 512-607 50-152 (206)
369 3snk_A Response regulator CHEY 23.1 30 0.001 29.6 1.7 31 530-560 14-45 (135)
370 3ilm_A ALR3790 protein; rhodan 23.1 51 0.0018 29.2 3.2 38 528-565 54-92 (141)
371 1aky_A Adenylate kinase; ATP:A 23.1 55 0.0019 31.1 3.7 25 208-232 4-28 (220)
372 1cr0_A DNA primase/helicase; R 23.0 1.2E+02 0.0042 30.2 6.5 43 205-248 32-74 (296)
373 1tq1_A AT5G66040, senescence-a 22.8 53 0.0018 28.4 3.2 38 528-565 80-118 (129)
374 2jba_A Phosphate regulon trans 22.7 2.9E+02 0.0098 22.5 8.1 92 529-627 25-122 (127)
375 1s2m_A Putative ATP-dependent 22.7 3.8E+02 0.013 27.4 10.7 91 512-609 68-171 (400)
376 2j0s_A ATP-dependent RNA helic 22.6 3.6E+02 0.012 27.8 10.5 89 512-607 84-185 (410)
377 3qmx_A Glutaredoxin A, glutare 22.5 2.6E+02 0.0089 22.7 7.4 60 529-589 14-74 (99)
378 2v3c_C SRP54, signal recogniti 22.4 48 0.0017 35.7 3.4 35 210-246 101-135 (432)
379 1qxn_A SUD, sulfide dehydrogen 22.4 52 0.0018 29.0 3.1 38 528-565 80-118 (137)
380 3eod_A Protein HNR; response r 22.3 2.3E+02 0.0077 23.4 7.3 29 530-558 7-35 (130)
381 3b6e_A Interferon-induced heli 22.2 96 0.0033 28.8 5.2 55 512-566 58-122 (216)
382 1yio_A Response regulatory pro 21.8 2.3E+02 0.0078 26.0 7.9 37 554-590 48-84 (208)
383 2qr3_A Two-component system re 21.8 1.3E+02 0.0046 25.3 5.7 92 529-627 26-126 (140)
384 2iut_A DNA translocase FTSK; n 21.7 1.2E+02 0.0039 34.0 6.3 41 208-248 214-256 (574)
385 1ak2_A Adenylate kinase isoenz 21.7 61 0.0021 31.3 3.7 25 208-232 16-40 (233)
386 3cu5_A Two component transcrip 21.5 3.6E+02 0.012 22.7 8.6 93 530-626 28-122 (141)
387 2k0z_A Uncharacterized protein 21.4 76 0.0026 26.5 3.8 38 528-565 54-91 (110)
388 1nks_A Adenylate kinase; therm 21.4 68 0.0023 29.3 3.9 25 211-235 4-28 (194)
389 4e7p_A Response regulator; DNA 21.4 85 0.0029 27.2 4.4 73 552-627 64-140 (150)
390 3hjn_A DTMP kinase, thymidylat 21.3 54 0.0019 30.9 3.1 20 217-236 9-28 (197)
391 3jte_A Response regulator rece 21.3 1.3E+02 0.0044 25.6 5.6 25 532-556 5-29 (143)
392 4b3f_X DNA-binding protein smu 21.3 1.2E+02 0.004 34.5 6.5 50 512-561 215-264 (646)
393 1fuu_A Yeast initiation factor 21.2 2.9E+02 0.01 28.2 9.3 88 512-607 68-168 (394)
394 1ixz_A ATP-dependent metallopr 21.2 1.1E+02 0.0036 29.8 5.4 24 209-232 50-73 (254)
395 2qmh_A HPR kinase/phosphorylas 21.0 46 0.0016 31.9 2.4 24 208-231 34-57 (205)
396 2qv0_A Protein MRKE; structura 20.8 1.1E+02 0.0039 25.9 5.1 26 531-556 10-36 (143)
397 3to5_A CHEY homolog; alpha(5)b 20.7 94 0.0032 27.2 4.4 70 553-625 56-131 (134)
398 3iqw_A Tail-anchored protein t 20.7 88 0.003 32.3 4.8 41 212-254 20-62 (334)
399 1g41_A Heat shock protein HSLU 20.6 89 0.003 33.8 5.0 25 208-232 50-74 (444)
400 1fuk_A Eukaryotic initiation f 20.6 1.3E+02 0.0043 27.0 5.5 56 237-298 29-87 (165)
401 3pxi_A Negative regulator of g 20.3 76 0.0026 36.9 4.7 28 207-234 200-227 (758)
402 3hdv_A Response regulator; PSI 20.2 1.6E+02 0.0055 24.7 5.9 93 530-628 31-128 (136)
403 3eul_A Possible nitrate/nitrit 20.1 1E+02 0.0036 26.6 4.7 25 530-554 15-39 (152)
404 3nwj_A ATSK2; P loop, shikimat 20.1 99 0.0034 30.4 4.9 38 195-232 35-72 (250)
405 3hdg_A Uncharacterized protein 20.1 1.2E+02 0.0043 25.4 5.1 57 530-590 31-87 (137)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-85 Score=785.08 Aligned_cols=520 Identities=38% Similarity=0.641 Sum_probs=427.7
Q ss_pred cccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCeEEEECCccHHHHHHHHHHh
Q 004347 182 VSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 182 ~~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~-~~~~~~~LIV~P~sll~~W~~E~~~~ 260 (759)
+|...+++|||||++||+||+.++.++.||||||+||+|||+|+|+++.++.. .+..+|+|||||.+++.||.+||.+|
T Consensus 229 p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 229 PPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKW 308 (800)
T ss_dssp CTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHH
T ss_pred CCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHH
Confidence 56677889999999999999999999999999999999999999999998864 45678999999999999999999999
Q ss_pred CCCceEEEEeCChhHHHHHHHhcCCC------CCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHH
Q 004347 261 VPSVSAIIYHGSKKERDEIRRKHMPR------AIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLL 334 (759)
Q Consensus 261 ~p~~~~~~~~g~~~~r~~~~~~~~~~------~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~ 334 (759)
+|...+++|+|+...+..++...+.. .....++|+||||+++..+. ..|...+|++|||||||++||..++++
T Consensus 309 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~-~~l~~~~w~~vIvDEaH~lkn~~s~~~ 387 (800)
T 3mwy_W 309 APDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR-AELGSIKWQFMAVDEAHRLKNAESSLY 387 (800)
T ss_dssp STTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH-HHHHTSEEEEEEETTGGGGCCSSSHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH-HHHhcCCcceeehhhhhhhcCchhHHH
Confidence 99999999999999888776654322 23357899999999998885 678888999999999999999999999
Q ss_pred HHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 004347 335 KELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILR 414 (759)
Q Consensus 335 ~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~ 414 (759)
+++..+++.+||+|||||++|++.|||++++||.|+.|+....|.... .. ......+..|+.+++
T Consensus 388 ~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~----~~-----------~~~~~~~~~L~~~l~ 452 (800)
T 3mwy_W 388 ESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN----QD-----------EEQEEYIHDLHRRIQ 452 (800)
T ss_dssp HHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C----CT-----------THHHHHHHHHHHTTG
T ss_pred HHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc----cc-----------hhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998666553211 00 012356788999999
Q ss_pred hHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhh
Q 004347 415 PFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLE 494 (759)
Q Consensus 415 p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~ 494 (759)
|+++||++.++...||++.+.+++|+||+.|+.+|..++......... ........++++++.||++|+||+++.
T Consensus 453 p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~-----~~~~~~~~~l~~l~~Lrk~~~hp~l~~ 527 (800)
T 3mwy_W 453 PFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTA-----GAKGGHFSLLNIMNELKKASNHPYLFD 527 (800)
T ss_dssp GGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---------------CTHHHHHHHHHHHHHCGGGSS
T ss_pred HHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhh-----ccccchhhHHHHHHHHHHHhcChhhhc
Confidence 999999999999999999999999999999999999987654322211 112234568899999999999999986
Q ss_pred hhccCC---------CCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCC
Q 004347 495 SAFSDS---------CFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 565 (759)
Q Consensus 495 ~~~~~~---------~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~ 565 (759)
...... ........++..|+|+.+|.++|..+.+.|+|+||||+++.++++|+.+|...|+++++++|+++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 607 (800)
T 3mwy_W 528 NAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVP 607 (800)
T ss_dssp SHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSC
T ss_pred chHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 543210 01112346778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHH
Q 004347 566 LDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVE 645 (759)
Q Consensus 566 ~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvE 645 (759)
..+|++++++|+++++..+|||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++.+|+|
T Consensus 608 ~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiE 687 (800)
T 3mwy_W 608 SAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVE 687 (800)
T ss_dssp HHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHH
T ss_pred HHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHH
Confidence 99999999999998778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccccccccCCHHHHHHhhcchhhhhhhh--hccCCCHHHHHHHHhhhhcccCC
Q 004347 646 GRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKM--IQTDIGEEDLERVLDRADLIAGC 723 (759)
Q Consensus 646 e~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~~~~~~~~--~~~~~~~e~l~~~l~~~~~~~~~ 723 (759)
++|++++..|..+.+++++.+.......... ..++.++|.++|+.+...-... .+..+.++||+.+|+|+....+.
T Consensus 688 e~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~--~~~~~~el~~ll~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 765 (800)
T 3mwy_W 688 EEVLERARKKMILEYAIISLGVTDGNKYTKK--NEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAEDHVTT 765 (800)
T ss_dssp HHHHHHHHHHTTSCC------------------CCCCHHHHHHHHSSCSSSSCCSHHHHHHHHTCCHHHHHHHCEECCCS
T ss_pred HHHHHHHHHHHHHHHHHHccCcccccccccc--cCCCHHHHHHHHHcchHhhhhccCccccccccCHHHHHHhhhhcccc
Confidence 9999999999999999999877654432221 2578899999998776432221 11235677899999999877554
Q ss_pred C
Q 004347 724 L 724 (759)
Q Consensus 724 ~ 724 (759)
.
T Consensus 766 ~ 766 (800)
T 3mwy_W 766 P 766 (800)
T ss_dssp C
T ss_pred c
Confidence 3
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.7e-79 Score=716.17 Aligned_cols=497 Identities=29% Similarity=0.450 Sum_probs=406.8
Q ss_pred cccCCccchhHHHHHHHHHHHh-----hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC-----CCCCeEEEECCccHHHH
Q 004347 184 LLTGGKLKSYQLKGVKWLISLW-----QNGLNGILADQMGLGKTIQTIAFLAHLKGNG-----LHGPYLVIAPLSTLSNW 253 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~-----~~~~~~ILademGlGKTl~ai~li~~l~~~~-----~~~~~LIV~P~sll~~W 253 (759)
......|||||.+||.||+..+ .++.||||||+||+|||+|+|+++..+...+ ..+++|||||.+++.||
T Consensus 50 p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW 129 (644)
T 1z3i_X 50 PVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNW 129 (644)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHH
T ss_pred hhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHH
Confidence 3345789999999999999876 4667899999999999999999999987654 24579999999999999
Q ss_pred HHHHHHhCCC-ceEEEEe-CChhHHHH-HHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChh
Q 004347 254 VNEISRFVPS-VSAIIYH-GSKKERDE-IRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPK 330 (759)
Q Consensus 254 ~~E~~~~~p~-~~~~~~~-g~~~~r~~-~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~ 330 (759)
.+||.+|+|. ..++.++ |+...+.. +............++|+|+||+++..+. ..+....|++|||||||++||..
T Consensus 130 ~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~-~~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 130 YNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA-EVLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT-TTTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH-HHhhcCCccEEEEECceecCChh
Confidence 9999999875 4455554 44443322 2222111112235789999999998875 67788899999999999999999
Q ss_pred hHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHH
Q 004347 331 CKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLH 410 (759)
Q Consensus 331 s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 410 (759)
++.++++..+++.+||+|||||++|++.|||++++|+.|++|++...|..+|..+....................+.+|+
T Consensus 209 ~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 288 (644)
T 1z3i_X 209 NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELI 288 (644)
T ss_dssp HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997653221111111112233456788899
Q ss_pred HHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCh
Q 004347 411 AILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHP 490 (759)
Q Consensus 411 ~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp 490 (759)
.++.||++||++.++...||++.+.+++|+||+.|+.+|+.++...... ............+..++.||++|+||
T Consensus 289 ~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp 363 (644)
T 1z3i_X 289 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHP 363 (644)
T ss_dssp HHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHH-----HHHhcCccchhHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999987653210 01111223456778899999999999
Q ss_pred hhhhhhccC-CC-----------CCCchHHHHhhccHHHHHHHHHHHHhh-CCCcEEEEccchhHHHHHHHHHHhcCceE
Q 004347 491 DLLESAFSD-SC-----------FYPPVEQIVEQCGKFRLLDRLLARLFA-RNHKVLVFSQWTKILDIMEYYFNEKGYEV 557 (759)
Q Consensus 491 ~l~~~~~~~-~~-----------~~~~~~~l~~~s~K~~~L~~lL~~l~~-~~~kvLIFsq~~~~ld~L~~~L~~~g~~~ 557 (759)
.++...... .. .+.........|+|+.+|..++..+.. .++|+||||+++.++++|+.+|...|+.+
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~ 443 (644)
T 1z3i_X 364 ALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLY 443 (644)
T ss_dssp HHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCE
Confidence 998543210 00 000011113468999999999998864 68999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEE
Q 004347 558 CRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR 637 (759)
Q Consensus 558 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyr 637 (759)
+++||+++..+|++++++|++++...++||+||++||+||||++|++||+||+||||..+.||+||+||+||+++|+||+
T Consensus 444 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 444 VRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp EEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 99999999999999999999866666789999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccCCHHHHHHhhcchh
Q 004347 638 LATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEE 694 (759)
Q Consensus 638 li~~~TvEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~~ 694 (759)
|++.+|+|++|++++..|..++..|++++.. ....++.+||.+|+.-..
T Consensus 524 lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~--------~~~~~~~~~l~~Lf~~~~ 572 (644)
T 1z3i_X 524 LLSTGTIEEKILQRQAHKKALSSCVVDEEQD--------VERHFSLGELRELFSLNE 572 (644)
T ss_dssp EEETTSHHHHHHHHHHHHHHTSCCCCSCSSS--------CCCSSCHHHHHHHTCCCS
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHhcCcch--------hhcCCCHHHHHHHhCCCC
Confidence 9999999999999999999999999986531 123678899999987654
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3e-73 Score=650.19 Aligned_cols=463 Identities=33% Similarity=0.547 Sum_probs=397.6
Q ss_pred ccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCC
Q 004347 183 SLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVP 262 (759)
Q Consensus 183 ~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p 262 (759)
|......|+|||.+|+.|+...+..+.+|||||+||+|||+++++++..+...+..+++|||||.+++.||.+||.+|+|
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAP 110 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCT
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHCC
Confidence 55566799999999999999888889999999999999999999999999888888899999999999999999999999
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCC
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPI 342 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~ 342 (759)
...+.+++|.... .....++|+|+||+.+.++.. +....|++|||||||+++|..++.++++..+++
T Consensus 111 ~~~v~~~~g~~~~-----------~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~ 177 (500)
T 1z63_A 111 HLRFAVFHEDRSK-----------IKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKS 177 (500)
T ss_dssp TSCEEECSSSTTS-----------CCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCE
T ss_pred CceEEEEecCchh-----------ccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccccCCHhHHHHHHHHhhcc
Confidence 9999999887621 122468999999999987642 677899999999999999999999999999999
Q ss_pred CcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhhh
Q 004347 343 GNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMK 422 (759)
Q Consensus 343 ~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k 422 (759)
.++|+|||||++|++.|||++++|+.|+.+++...|..+|..+..... ......|+.++.|+++||++
T Consensus 178 ~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~------------~~~~~~l~~~l~~~~lrr~k 245 (500)
T 1z63_A 178 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD------------NMAKEELKAIISPFILRRTK 245 (500)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC------------HHHHHHHHHHHTTTEECCCT
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc------------HHHHHHHHHHHhhHeeeecc
Confidence 999999999999999999999999999999999999988865432211 23456788999999999999
Q ss_pred hH--HhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCC
Q 004347 423 SD--VEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDS 500 (759)
Q Consensus 423 ~d--v~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~ 500 (759)
.+ +...||++.+..++++|++.|..+|+.+......... ...+......+...++.||++|+||.++.....
T Consensus 246 ~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~-- 319 (500)
T 1z63_A 246 YDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQ-- 319 (500)
T ss_dssp TCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTT----TCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCC--
T ss_pred cccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHH----hhhcccchHHHHHHHHHHHHHhCCHHHhcCccc--
Confidence 76 6678999999999999999999999988765322110 011112234567788999999999998864321
Q ss_pred CCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc-CceEEEEeCCCCHHHHHHHHHHhhcc
Q 004347 501 CFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK-GYEVCRIDGSVRLDERKRQIQDFNDV 579 (759)
Q Consensus 501 ~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~ 579 (759)
....++|+..+.+++..+...++|+||||+++.+++.|..+|... |+.+..++|+++..+|.+++++|+++
T Consensus 320 --------~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~ 391 (500)
T 1z63_A 320 --------SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNN 391 (500)
T ss_dssp --------CSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHC
T ss_pred --------hhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCC
Confidence 234688999999999999999999999999999999999999986 99999999999999999999999983
Q ss_pred CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHH
Q 004347 580 NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLE 659 (759)
Q Consensus 580 ~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~ 659 (759)
+.++++|+||+++|+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+|++|++++..|..++
T Consensus 392 -~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~ 470 (500)
T 1z63_A 392 -PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLF 470 (500)
T ss_dssp -TTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSS
T ss_pred -CCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccccccccccccccCCHHHHHHhhcch
Q 004347 660 HVVIGKGQFHQERTKSNCIDALEEEDLLALLQDE 693 (759)
Q Consensus 660 ~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~ 693 (759)
+.+++++.- ....++.+||..++.-.
T Consensus 471 ~~~~~~~~~--------~~~~~~~~~l~~l~~~~ 496 (500)
T 1z63_A 471 KDIISSGDS--------WITELSTEELRKVIELS 496 (500)
T ss_dssp SSGGGSTTG--------GGGSSCHHHHHHHHSCC
T ss_pred HHHhhcCcc--------hhccCCHHHHHHHhccC
Confidence 999986531 12367788888887643
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.1e-51 Score=502.22 Aligned_cols=440 Identities=19% Similarity=0.243 Sum_probs=329.4
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceE
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSA 266 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~ 266 (759)
...|+|||.+++.|++. ..+.++||||+||+|||+++++++..+...+..+++|||||.+++.||..||.+|+ +..+
T Consensus 151 ~~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v 227 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLRF 227 (968)
T ss_dssp SSCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCCC
T ss_pred CCCCcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCE
Confidence 46899999999999987 44678999999999999999999999999888889999999999999999998888 5677
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH--HHhhhhcCccEEEEcCcccccChhhH---HHHHHhcC-
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA--RKYLRHYNWKYLVVDEGHRLKNPKCK---LLKELKYI- 340 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~--~~~l~~~~~~~lIvDEaH~ikn~~s~---~~~~l~~l- 340 (759)
.+++|+...... . ........++|+|+||+.+.++. ...+...+|++|||||||+++|..+. .++.+..+
T Consensus 228 ~v~~~~~~~~~~-~---~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 228 ALFDDERYAEAQ-H---DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp EECCHHHHHHHH-H---TTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred EEEccchhhhhh-h---hcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 777776543321 1 11223346899999999997642 13466778999999999999986644 46677766
Q ss_pred -CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCC------------C-Cchh---hHHHHH-----
Q 004347 341 -PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGK------------C-NSEV---MKEELE----- 398 (759)
Q Consensus 341 -~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~------------~-~~~~---~~~~~~----- 398 (759)
++.++|+|||||++|++.|+|++++|+.|..|++...|..++..... . .... ......
T Consensus 304 ~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~ 383 (968)
T 3dmq_A 304 EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIE 383 (968)
T ss_dssp TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSS
T ss_pred hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhH
Confidence 67889999999999999999999999999999999988876531100 0 0000 000000
Q ss_pred ----------HHHHHHHHHHHHHHh-----hhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 004347 399 ----------EKRRGQMVAKLHAIL-----RPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLRE 463 (759)
Q Consensus 399 ----------~~~~~~~~~~L~~il-----~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~ 463 (759)
..........+..++ ...++|+++..+. .+|.+....+.+.+++.....|......
T Consensus 384 ~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~~~~-------- 454 (968)
T 3dmq_A 384 PLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVSGIM-------- 454 (968)
T ss_dssp TTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHHHHT--------
T ss_pred HHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHHhhh--------
Confidence 000000011122222 2344555555553 6888888889999999888877643110
Q ss_pred hhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHH
Q 004347 464 KVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKIL 543 (759)
Q Consensus 464 ~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~l 543 (759)
......... ...+.+|..+...+... ....+..+.|+..|.+++.. ..+.++||||++..++
T Consensus 455 ---~~~~~~~~~--------~~~~l~pe~~~~~l~~~-----~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~ 516 (968)
T 3dmq_A 455 ---GARKSAEDR--------ARDMLYPERIYQEFEGD-----NATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATA 516 (968)
T ss_dssp ---TCCSSGGGG--------THHHHCSGGGTTTTTSS-----SCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHH
T ss_pred ---hhhhhhHHH--------HhhhcChHHHHHHhhhh-----hhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHH
Confidence 000000000 01122343333322211 11234557899999999987 5789999999999999
Q ss_pred HHHHHHHHh-cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhh
Q 004347 544 DIMEYYFNE-KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMD 622 (759)
Q Consensus 544 d~L~~~L~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~g 622 (759)
+.|...|.. .|+++..+||+++..+|.+++++|+++++.+.| |++|+++++|||++.|++||+||+||||..+.|++|
T Consensus 517 ~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v-LvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~G 595 (968)
T 3dmq_A 517 LQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV-LLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIG 595 (968)
T ss_dssp HHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE-EECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccE-EEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhh
Confidence 999999995 599999999999999999999999985434555 789999999999999999999999999999999999
Q ss_pred hhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Q 004347 623 RCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHV 661 (759)
Q Consensus 623 R~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~ 661 (759)
|++|+||++.|.||++++.+|+|++|++.+..|..++..
T Consensus 596 R~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~ 634 (968)
T 3dmq_A 596 RLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEH 634 (968)
T ss_dssp TTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSS
T ss_pred ccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceec
Confidence 999999999999999999999999999999888776544
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.6e-46 Score=423.49 Aligned_cols=437 Identities=16% Similarity=0.175 Sum_probs=290.7
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHhC--CCc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFV--PSV 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~--p~~ 264 (759)
.+|+|||.+++.|++. + ++||+++||+|||++++.++..+.. +..+++|||||. +++.||.+++.+|+ |..
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 4799999999999985 4 9999999999999999998877765 445799999997 78899999999997 556
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh--hHHHHHHh-cC
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKLLKELK-YI 340 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~--s~~~~~l~-~l 340 (759)
.+..++|........... ..++|+|+||+.+...... .+...+|++|||||||++++.. ..+...+. ..
T Consensus 82 ~v~~~~g~~~~~~~~~~~-------~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~ 154 (494)
T 1wp9_A 82 KIVALTGEKSPEERSKAW-------ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154 (494)
T ss_dssp GEEEECSCSCHHHHHHHH-------HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC
T ss_pred heEEeeCCcchhhhhhhc-------cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC
Confidence 889999876544321111 2568999999999887532 3456689999999999998642 22222222 34
Q ss_pred CCCcEEEEecCCCCCCHHHHHhhhhhccCC---CCCChHHHHHHhcccCCCCc-hhhHHHHHHHHHHHHHHHHHHHhhhH
Q 004347 341 PIGNKLLLTGTPLQNNLAELWSLLHFILPD---IFSSLEEFQSWFDLSGKCNS-EVMKEELEEKRRGQMVAKLHAILRPF 416 (759)
Q Consensus 341 ~~~~rllLTgTPl~n~~~el~sll~fl~p~---~~~~~~~F~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~il~p~ 416 (759)
+..++|+|||||. ++..+++.+++++.+. .......+...+........ ... .......+...+.++
T Consensus 155 ~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 225 (494)
T 1wp9_A 155 KNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVD--------LPEIYKEVRKLLREM 225 (494)
T ss_dssp SSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEEC--------CCHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecC--------CcHHHHHHHHHHHHH
Confidence 6788999999999 6677777777766543 22222111111111100000 000 012345677778899
Q ss_pred HhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHH--------------H--HHHhhhhcCCcchhHHHHHH
Q 004347 417 LLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLEN--------------H--LREKVFSAGRGMKGKLNNLM 480 (759)
Q Consensus 417 ~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~--------------~--~~~~~~~~~~~~~~~l~~~l 480 (759)
+.++.+......+..... ..++.....-....+...... . +..............+...+
T Consensus 226 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (494)
T 1wp9_A 226 LRDALKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 301 (494)
T ss_dssp HHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccccccC----CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Confidence 999888877766543321 122222211100000000000 0 00000000000111222333
Q ss_pred HHHHHhcCChhhhh--hhccCCCCCCchHHH---H-------hhccHHHHHHHHHHHHh--hCCCcEEEEccchhHHHHH
Q 004347 481 VQLRKNCNHPDLLE--SAFSDSCFYPPVEQI---V-------EQCGKFRLLDRLLARLF--ARNHKVLVFSQWTKILDIM 546 (759)
Q Consensus 481 ~~Lrk~~~hp~l~~--~~~~~~~~~~~~~~l---~-------~~s~K~~~L~~lL~~l~--~~~~kvLIFsq~~~~ld~L 546 (759)
..+...+.|+.... ..+.+ +..... + ..++|+..|.++|..+. ..++|+||||+++.+++.+
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l 377 (494)
T 1wp9_A 302 KKLYEEAKAGSTKASKEIFSD----KRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKI 377 (494)
T ss_dssp HHHHHHHHTTCCHHHHHHHTS----HHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHH
T ss_pred HHHHHhhccccchhhhhhhhh----HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHH
Confidence 33333332211000 00000 001111 1 45679999999999877 5799999999999999999
Q ss_pred HHHHHhcCceEEEEeC--------CCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhh
Q 004347 547 EYYFNEKGYEVCRIDG--------SVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDL 618 (759)
Q Consensus 547 ~~~L~~~g~~~~~l~G--------~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~ 618 (759)
..+|...|+.+..++| +++..+|++++++|+++. +. +|++|+++|+|||+++|++||+||+||||..+.
T Consensus 378 ~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~--~~-vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~ 454 (494)
T 1wp9_A 378 VNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE--FN-VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSI 454 (494)
T ss_dssp HHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS--CS-EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHH
T ss_pred HHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC--ce-EEEECCccccCCCchhCCEEEEeCCCCCHHHHH
Confidence 9999999999999999 899999999999999844 33 599999999999999999999999999999999
Q ss_pred HHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHH
Q 004347 619 QAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEH 660 (759)
Q Consensus 619 Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~ 660 (759)
||+||++|.|| +.+|+|++.+|+|++++.++..|.++.+
T Consensus 455 Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 455 QRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp HHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred HHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 99999999998 8999999999999999999999987654
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-44 Score=374.84 Aligned_cols=255 Identities=29% Similarity=0.407 Sum_probs=193.1
Q ss_pred HHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhh
Q 004347 416 FLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLES 495 (759)
Q Consensus 416 ~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~ 495 (759)
-.+||+|.+|..+||++.+.+++|+||+.|+.+|+.++......... ..+......+++.+++||++|+||.++..
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~ 87 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDS----VTGIKRKGMILSTLLKLKQIVDHPALLKG 87 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTT----CCHHHHHHHHHHHHHHHHHHTTCTHHHHC
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHh----ccccchHHHHHHHHHHHHHHcCCHHHhcC
Confidence 45899999999999999999999999999999999998765432210 00111234678889999999999999873
Q ss_pred hccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc-CceEEEEeCCCCHHHHHHHHH
Q 004347 496 AFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK-GYEVCRIDGSVRLDERKRQIQ 574 (759)
Q Consensus 496 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~l~G~~~~~~R~~~i~ 574 (759)
.. .++..++|+..|.++|..+...++|+||||+++.+++.|..+|... |+++++++|+++..+|+++++
T Consensus 88 ~~----------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~ 157 (271)
T 1z5z_A 88 GE----------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIIS 157 (271)
T ss_dssp SC----------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHH
T ss_pred Cc----------cccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHH
Confidence 21 1245689999999999999989999999999999999999999985 999999999999999999999
Q ss_pred HhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHH
Q 004347 575 DFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFS 654 (759)
Q Consensus 575 ~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~ 654 (759)
+|++ ++.++|||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+|++|++++..
T Consensus 158 ~F~~-~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~ 236 (271)
T 1z5z_A 158 KFQN-NPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 236 (271)
T ss_dssp HHHH-CTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHH
T ss_pred HhcC-CCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHH
Confidence 9998 346678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccccccccccccccCCHHHHHHhhcch
Q 004347 655 KLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDE 693 (759)
Q Consensus 655 K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~ 693 (759)
|..+++.+++.+.. ....++.+||.+|+.-.
T Consensus 237 K~~l~~~~~~~~~~--------~~~~~~~~~l~~l~~~~ 267 (271)
T 1z5z_A 237 KRSLFKDIISSGDS--------WITELSTEELRKVIELS 267 (271)
T ss_dssp CHHHHTTGGGGTTH--------HHHTSCHHHHHHHHSCC
T ss_pred HHHHHHHHHccCch--------hhhcCCHHHHHHHhccC
Confidence 99999999986531 12367888888888754
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.2e-42 Score=390.61 Aligned_cols=372 Identities=18% Similarity=0.255 Sum_probs=260.1
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHhCCCc
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVPSV 264 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~ 264 (759)
.+..|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||. .++.||.++|.+| +.
T Consensus 90 ~~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 356899999999998764 5679999999999999999888765 4689999998 7889999999995 45
Q ss_pred e-EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCC
Q 004347 265 S-AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIG 343 (759)
Q Consensus 265 ~-~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~ 343 (759)
. +.+++|... ...+|+|+||+.+..... .+. ..|++|||||||++.+.... ..+..+...
T Consensus 159 ~~v~~~~g~~~---------------~~~~Ivv~T~~~l~~~~~-~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~ 219 (472)
T 2fwr_A 159 EYVGEFSGRIK---------------ELKPLTVSTYDSAYVNAE-KLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAP 219 (472)
T ss_dssp GGEEEBSSSCB---------------CCCSEEEEEHHHHHHTHH-HHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCS
T ss_pred cceEEECCCcC---------------CcCCEEEEEcHHHHHHHH-Hhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCC
Confidence 6 788887653 246899999999877653 232 35899999999999987654 356667888
Q ss_pred cEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhh
Q 004347 344 NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKS 423 (759)
Q Consensus 344 ~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k~ 423 (759)
++|+|||||.+++-.+. .+..++.|.+.++...
T Consensus 220 ~~l~lSATp~~~~~~~~-----------------------------------------------~l~~~~~~~~~~~~~~ 252 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHE-----------------------------------------------ILKEVVGGKVFELFPD 252 (472)
T ss_dssp EEEEEESCCCCTTSGGG-----------------------------------------------SHHHHTCCEEEECCHH
T ss_pred eEEEEecCccCCCCHHH-----------------------------------------------HHHHHhCCeEeecCHH
Confidence 99999999986542210 0122233444444444
Q ss_pred HHh-hhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCC
Q 004347 424 DVE-QMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCF 502 (759)
Q Consensus 424 dv~-~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~ 502 (759)
++. ..+++.....+.+.+++.+...|..+...... .+....... .....+ ...+..........
T Consensus 253 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~--~~~~~~------------~~~~~~~~~~~~~~ 317 (472)
T 2fwr_A 253 SLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQ-FLRARGITL--RRAEDF------------NKIVMASGYDERAY 317 (472)
T ss_dssp HHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHS-CSSSCCCTT--TCCSSS------------TTTTTTTCCSSSSS
T ss_pred HHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHH-HHHhcCccc--cchhhH------------HHHHHHhccCHHHH
Confidence 442 23677777788899999998888766443211 000000000 000000 00000000000000
Q ss_pred CCc------hHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHh
Q 004347 503 YPP------VEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDF 576 (759)
Q Consensus 503 ~~~------~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F 576 (759)
... ....+..+.|+..|.+++.. ..++++||||++..+++.+...|. +..++|+++..+|++++++|
T Consensus 318 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F 390 (472)
T 2fwr_A 318 EALRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGF 390 (472)
T ss_dssp TTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHH
Confidence 000 01123456799999999988 468999999999999999998884 45689999999999999999
Q ss_pred hccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCC-CceEEEEEeeCCCHHHHHHHHHHHH
Q 004347 577 NDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQT-KPVHVYRLATAQSVEGRILKRAFSK 655 (759)
Q Consensus 577 ~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~-k~V~Vyrli~~~TvEe~i~~~~~~K 655 (759)
+++. +. +|++|+++++|||++.+++||+||++|||..+.|++||++|.||. +.|.||.|++.+|+|+++.++...|
T Consensus 391 ~~g~--~~-vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~ 467 (472)
T 2fwr_A 391 RTGR--FR-AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNA 467 (472)
T ss_dssp HHSS--CS-BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-----------
T ss_pred hCCC--CC-EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHh
Confidence 9844 33 489999999999999999999999999999999999999999998 7899999999999999999998877
Q ss_pred HHHH
Q 004347 656 LKLE 659 (759)
Q Consensus 656 ~~l~ 659 (759)
.+++
T Consensus 468 ~~~a 471 (472)
T 2fwr_A 468 AKGA 471 (472)
T ss_dssp ----
T ss_pred hccC
Confidence 7653
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.4e-39 Score=371.93 Aligned_cols=445 Identities=15% Similarity=0.169 Sum_probs=228.6
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC---CCCeEEEECC-ccHHHHHHHHHHhCC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL---HGPYLVIAPL-STLSNWVNEISRFVP 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~---~~~~LIV~P~-sll~~W~~E~~~~~p 262 (759)
..+|+|||.+++.+++. +.++|++++||+|||++++..+......+. .+++|||||+ .++.||.+++.++++
T Consensus 5 ~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 5 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ---CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 35799999999999975 789999999999999998887777666544 6789999998 688999999999986
Q ss_pred --CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hh-hhcCccEEEEcCcccccChhhHHH---H
Q 004347 263 --SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YL-RHYNWKYLVVDEGHRLKNPKCKLL---K 335 (759)
Q Consensus 263 --~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l-~~~~~~~lIvDEaH~ikn~~s~~~---~ 335 (759)
++.+..++|............ ..++|+|+||+.+...+.. .+ ....|++|||||||++.+...... .
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~ 154 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVI------EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTR 154 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHH------HHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhh------CCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHH
Confidence 678888888764332211111 2468999999999877643 22 345689999999999987653211 1
Q ss_pred HHhc-----CCCCcEEEEecCCCCCCHH-------HHHhhhhhccCCC----CCChHHHHHHhcccCCCCchh---hHHH
Q 004347 336 ELKY-----IPIGNKLLLTGTPLQNNLA-------ELWSLLHFILPDI----FSSLEEFQSWFDLSGKCNSEV---MKEE 396 (759)
Q Consensus 336 ~l~~-----l~~~~rllLTgTPl~n~~~-------el~sll~fl~p~~----~~~~~~F~~~f~~~~~~~~~~---~~~~ 396 (759)
.+.. .+..++++|||||.+++.. .+..+...+.+.. ......+..++..+....... ....
T Consensus 155 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (556)
T 4a2p_A 155 YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNP 234 (556)
T ss_dssp HHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCH
T ss_pred HHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCCh
Confidence 1111 1346789999999887643 3333334444321 123445555544322110000 0000
Q ss_pred HHHHHHHHHHHHHHHHhhh----------------------HHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHH
Q 004347 397 LEEKRRGQMVAKLHAILRP----------------------FLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLIN 454 (759)
Q Consensus 397 ~~~~~~~~~~~~L~~il~p----------------------~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~ 454 (759)
.. .........++.++.. ++....+......+| ....+..+|..+..
T Consensus 235 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 303 (556)
T 4a2p_A 235 FA-AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE----------DKEEESRICRALFI 303 (556)
T ss_dssp HH-HHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhccc----------ccchhHHHHHHHHH
Confidence 00 0001112222222221 121111111111122 11222222322211
Q ss_pred HHH--HHHHHHhhhhcCCc---chhHHHHHHHHHHHhcCChhhh--hhhccCCCCCCchHHH---H----hhccHHHHHH
Q 004347 455 KTL--ENHLREKVFSAGRG---MKGKLNNLMVQLRKNCNHPDLL--ESAFSDSCFYPPVEQI---V----EQCGKFRLLD 520 (759)
Q Consensus 455 ~~~--~~~~~~~~~~~~~~---~~~~l~~~l~~Lrk~~~hp~l~--~~~~~~~~~~~~~~~l---~----~~s~K~~~L~ 520 (759)
... ..+........... ....+...+..++....++.-. ...+. .....+ . ..++|+..|.
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~K~~~L~ 378 (556)
T 4a2p_A 304 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQ-----EKEPELIALSKDETNENPKLEELV 378 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-----TTHHHHHHHHHCSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHh-----hHHHHhhhhccCCCCCChHHHHHH
Confidence 100 00000000000000 0011111111111111110000 00000 000000 0 1367999999
Q ss_pred HHHHHHh--hCCCcEEEEccchhHHHHHHHHHHhc------------CceEEEEeCCCCHHHHHHHHHHhhccCCCceEE
Q 004347 521 RLLARLF--ARNHKVLVFSQWTKILDIMEYYFNEK------------GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIF 586 (759)
Q Consensus 521 ~lL~~l~--~~~~kvLIFsq~~~~ld~L~~~L~~~------------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~ 586 (759)
++|.... ..++|+||||+++.+++.|..+|... |..+..+||+++..+|.+++++|++ ++.++ +
T Consensus 379 ~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~-~g~~~-v 456 (556)
T 4a2p_A 379 CILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNR-L 456 (556)
T ss_dssp HHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------------CC-E
T ss_pred HHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc-cCceE-E
Confidence 9998876 67899999999999999999999765 6666777888999999999999997 23344 5
Q ss_pred EEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhc
Q 004347 587 LLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIG 664 (759)
Q Consensus 587 LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~vi~ 664 (759)
|++|+++|+|||+++|++||+||+||||..|.||+|| |+.+++.+|.|++.++++++ +.....|..+...++.
T Consensus 457 LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 457 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp EEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999 44578999999999999998 6677777777777765
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.1e-39 Score=385.10 Aligned_cols=451 Identities=16% Similarity=0.172 Sum_probs=235.3
Q ss_pred cccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC---CCCeEEEECCc-cHHHHHHHHHH
Q 004347 184 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL---HGPYLVIAPLS-TLSNWVNEISR 259 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~---~~~~LIV~P~s-ll~~W~~E~~~ 259 (759)
......|+|||.+++.+++. +.++|++++||+|||++++..+......+. .+++|||||+. ++.||.+++.+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 33466899999999999875 789999999999999998888777666544 67999999965 78999999999
Q ss_pred hCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hh-hhcCccEEEEcCcccccChhhHHH-
Q 004347 260 FVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YL-RHYNWKYLVVDEGHRLKNPKCKLL- 334 (759)
Q Consensus 260 ~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l-~~~~~~~lIvDEaH~ikn~~s~~~- 334 (759)
|++ ++.+..++|........... ...++|+|+||+.+...+.. .+ ...+|++|||||||++.+......
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~~~------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i 392 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVEKV------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL 392 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHHHH------HHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHH
T ss_pred hcccCCceEEEEeCCcchhhhHHHh------hCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHH
Confidence 987 78899999887443321111 13578999999999877642 12 344679999999999987543111
Q ss_pred --HHHhc-----CCCCcEEEEecCCCCCCHHH----------HHhhhhhcc-CCCCCChHHHHHHhcccCCCCchh---h
Q 004347 335 --KELKY-----IPIGNKLLLTGTPLQNNLAE----------LWSLLHFIL-PDIFSSLEEFQSWFDLSGKCNSEV---M 393 (759)
Q Consensus 335 --~~l~~-----l~~~~rllLTgTPl~n~~~e----------l~sll~fl~-p~~~~~~~~F~~~f~~~~~~~~~~---~ 393 (759)
..+.. .+..++++|||||.+++..+ ++..++.-. .........+..++..+....... .
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 472 (797)
T 4a2q_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRI 472 (797)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCS
T ss_pred HHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCC
Confidence 11111 23467899999998865433 333333211 112223345555554332111000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH----------------------hhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHH
Q 004347 394 KEELEEKRRGQMVAKLHAILRPFL----------------------LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDH 451 (759)
Q Consensus 394 ~~~~~~~~~~~~~~~L~~il~p~~----------------------lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~ 451 (759)
.... ..........++.+++.++ ....+......+|. ...+..++..
T Consensus 473 ~~~~-~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 541 (797)
T 4a2q_A 473 HNPF-AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED----------KEEESRICRA 541 (797)
T ss_dssp CCHH-HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSS----------HHHHHHHHHH
T ss_pred CcHH-HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccc----------cchhhHHHHH
Confidence 0000 0011122333333333322 11111111111111 1111222222
Q ss_pred HHHHH--HHHHHHHhhhhcCCc---chhHHHHHHHHHHHhcCChhhh--hhhccCCCCCCchHHH----HhhccHHHHHH
Q 004347 452 LINKT--LENHLREKVFSAGRG---MKGKLNNLMVQLRKNCNHPDLL--ESAFSDSCFYPPVEQI----VEQCGKFRLLD 520 (759)
Q Consensus 452 l~~~~--~~~~~~~~~~~~~~~---~~~~l~~~l~~Lrk~~~hp~l~--~~~~~~~~~~~~~~~l----~~~s~K~~~L~ 520 (759)
+.... +..+........... ....+...+..++.....+..- ...+... .+..... ...++|+..|.
T Consensus 542 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~l~~~~~~~~~~~~K~~~L~ 619 (797)
T 4a2q_A 542 LFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEK--EPELIALSKDETNENPKLEELV 619 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTT--HHHHHHHHHCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHH--HHHHHHhhcCCCCCChHHHHHH
Confidence 11100 000000000000000 0001111111111111110000 0000000 0000000 01367999999
Q ss_pred HHHHHHh--hCCCcEEEEccchhHHHHHHHHHHh------------cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEE
Q 004347 521 RLLARLF--ARNHKVLVFSQWTKILDIMEYYFNE------------KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIF 586 (759)
Q Consensus 521 ~lL~~l~--~~~~kvLIFsq~~~~ld~L~~~L~~------------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~ 586 (759)
++|.... ..++|+||||+++.+++.|..+|.. .|..+..+||+++..+|.+++++|++ ++.+. +
T Consensus 620 ~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~-~g~~~-v 697 (797)
T 4a2q_A 620 CILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNR-L 697 (797)
T ss_dssp HHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-----------------------------CCS-E
T ss_pred HHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc-cCCce-E
Confidence 9998854 6679999999999999999999976 36777888999999999999999997 23334 6
Q ss_pred EEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhc
Q 004347 587 LLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIG 664 (759)
Q Consensus 587 LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~vi~ 664 (759)
|++|+++|+|||+++|++||+||+||||..|.||+|| +| .+++.+|.|++.++++++ +.....|..+...++.
T Consensus 698 LVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~ 770 (797)
T 4a2q_A 698 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 770 (797)
T ss_dssp EEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 44 588999999999999999 6677778888777775
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.5e-39 Score=395.20 Aligned_cols=444 Identities=15% Similarity=0.153 Sum_probs=226.4
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC---CCCeEEEECCc-cHHHHHHHHHHhC
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL---HGPYLVIAPLS-TLSNWVNEISRFV 261 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~---~~~~LIV~P~s-ll~~W~~E~~~~~ 261 (759)
....|+|||.+++.+++. |.++|++++||+|||++++..+......+. .+++|||||+. ++.||.+++.+|+
T Consensus 245 ~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ---CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 366899999999999975 789999999999999998887776665444 67899999966 7899999999998
Q ss_pred C--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hh-hhcCccEEEEcCcccccChhhHHHHHH
Q 004347 262 P--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YL-RHYNWKYLVVDEGHRLKNPKCKLLKEL 337 (759)
Q Consensus 262 p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l-~~~~~~~lIvDEaH~ikn~~s~~~~~l 337 (759)
+ ++.+..++|....+...... ...++|+|+||+.+.+.+.. .+ ....|++|||||||++.+... ....+
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~------~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~ 393 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKV------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLM 393 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHH------HHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHH
T ss_pred cccCceEEEEECCcchhhHHHHh------ccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHH
Confidence 6 68888899877443211110 12568999999999877642 12 334589999999999987643 22222
Q ss_pred hc---------CCCCcEEEEecCCCCCCHHHHHhhhhhc-------cCCC----CCChHHHHHHhcccCCCCchhhHHHH
Q 004347 338 KY---------IPIGNKLLLTGTPLQNNLAELWSLLHFI-------LPDI----FSSLEEFQSWFDLSGKCNSEVMKEEL 397 (759)
Q Consensus 338 ~~---------l~~~~rllLTgTPl~n~~~el~sll~fl-------~p~~----~~~~~~F~~~f~~~~~~~~~~~~~~~ 397 (759)
.. ....++++|||||.+++..+++.+++.+ .+.. ......+..++..+.......
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~----- 468 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLV----- 468 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEEC-----
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEec-----
Confidence 11 2346789999999987765555444332 1111 111122222221110000000
Q ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhhHHhhhCC--CceEEEEEecCC-----------------------HHHHHHHHHH
Q 004347 398 EEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLP--RKKEIILYATMT-----------------------EHQRNFQDHL 452 (759)
Q Consensus 398 ~~~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP--~k~e~~v~~~ls-----------------------~~q~~~y~~l 452 (759)
.......+...+..++ .+...-....+. .... .-...+. .....++..+
T Consensus 469 ----~~~~~~~~~~~l~~l~-~~i~~~~~~~l~~~~l~~-~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l 542 (936)
T 4a2w_A 469 ----KRRIHNPFAAIISNLM-SETEALMRTIAYVDTLSQ-NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 542 (936)
T ss_dssp ----CCCSCCHHHHHHHHHH-HHHHHHHHHC-------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHH
T ss_pred ----ccccCcHHHHHHHHHH-HHHHHHHHHHHhhhhhhh-ccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 0000000111111110 000000000000 0000 0000000 0001111111
Q ss_pred HHHH--HHHHHHHhhhhcCCc---chhHHHHHHHHHHHhcCChh---hhhhhccCCCCCCchHHH-------HhhccHHH
Q 004347 453 INKT--LENHLREKVFSAGRG---MKGKLNNLMVQLRKNCNHPD---LLESAFSDSCFYPPVEQI-------VEQCGKFR 517 (759)
Q Consensus 453 ~~~~--~~~~~~~~~~~~~~~---~~~~l~~~l~~Lrk~~~hp~---l~~~~~~~~~~~~~~~~l-------~~~s~K~~ 517 (759)
.... +..+........... ....+...+..++.....+. +.. .+. .....+ ...++|+.
T Consensus 543 ~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~-~~~-----~~~~~l~~~~~~~~~~~~K~~ 616 (936)
T 4a2w_A 543 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTA-KFQ-----EKEPELIALSKDETNENPKLE 616 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH-HHH-----HHHHHHHHHHTSTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HHH-----HHHHHHHHhhhccCCCCHHHH
Confidence 0000 000000000000000 00001111111111100000 000 000 000000 01377999
Q ss_pred HHHHHHHHHh--hCCCcEEEEccchhHHHHHHHHHHhc------------CceEEEEeCCCCHHHHHHHHHHhhccCCCc
Q 004347 518 LLDRLLARLF--ARNHKVLVFSQWTKILDIMEYYFNEK------------GYEVCRIDGSVRLDERKRQIQDFNDVNSSY 583 (759)
Q Consensus 518 ~L~~lL~~l~--~~~~kvLIFsq~~~~ld~L~~~L~~~------------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 583 (759)
.|.++|.... ..++|+||||+++.+++.|..+|... |..+..+||+++..+|.+++++|++ ++.+
T Consensus 617 ~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~-~g~~ 695 (936)
T 4a2w_A 617 ELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDN 695 (936)
T ss_dssp HHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------------CC
T ss_pred HHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc-cCCe
Confidence 9999999875 56799999999999999999999976 6667777889999999999999997 2334
Q ss_pred eEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHh
Q 004347 584 RIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVI 663 (759)
Q Consensus 584 ~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~~K~~l~~~vi 663 (759)
+ +|++|+++|+|||++.|++||+||+||||..+.||+|| |+.+++.+|.|++.+|++++.+ ....|..+...++
T Consensus 696 ~-VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i 769 (936)
T 4a2w_A 696 R-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAV 769 (936)
T ss_dssp S-EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHH
T ss_pred e-EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHH
Confidence 4 59999999999999999999999999999999999999 5558889999999999999866 6666777777766
Q ss_pred c
Q 004347 664 G 664 (759)
Q Consensus 664 ~ 664 (759)
.
T Consensus 770 ~ 770 (936)
T 4a2w_A 770 E 770 (936)
T ss_dssp H
T ss_pred H
Confidence 5
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.3e-38 Score=367.57 Aligned_cols=415 Identities=16% Similarity=0.189 Sum_probs=236.6
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC---CCCeEEEECC-ccHHHHHHHHHHhCC-
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL---HGPYLVIAPL-STLSNWVNEISRFVP- 262 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~---~~~~LIV~P~-sll~~W~~E~~~~~p- 262 (759)
.+|+|||.+++.+++. +.++|++++||+|||++++..+......+. .+++|||||+ .++.||.+++.++++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999974 789999999999999998887777666544 6789999998 678999999999976
Q ss_pred -CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hh-hhcCccEEEEcCcccccChhhHHH---HH
Q 004347 263 -SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YL-RHYNWKYLVVDEGHRLKNPKCKLL---KE 336 (759)
Q Consensus 263 -~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l-~~~~~~~lIvDEaH~ikn~~s~~~---~~ 336 (759)
++.+..++|........... ...++|+|+||+.+...+.. .+ ....|++|||||||++.+...... ..
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~ 152 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHI------IEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRY 152 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHH------HHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHH------hcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHH
Confidence 67888888876433211111 02468999999999877643 12 344689999999999987653211 11
Q ss_pred HhcC------CCCcEEEEecCCCCCCHHHHHhhhh-------hccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHH
Q 004347 337 LKYI------PIGNKLLLTGTPLQNNLAELWSLLH-------FILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRG 403 (759)
Q Consensus 337 l~~l------~~~~rllLTgTPl~n~~~el~sll~-------fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~ 403 (759)
+... ...++++|||||.+++..++..+++ ++.+..+...
T Consensus 153 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---------------------------- 204 (555)
T 3tbk_A 153 LDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATV---------------------------- 204 (555)
T ss_dssp HHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECC----------------------------
T ss_pred HHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeecc----------------------------
Confidence 1111 3357899999999987554444332 2221111000
Q ss_pred HHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEec--CCHHHHHHHHHHHHHHHHHHHH-------------------
Q 004347 404 QMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYAT--MTEHQRNFQDHLINKTLENHLR------------------- 462 (759)
Q Consensus 404 ~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~--ls~~q~~~y~~l~~~~~~~~~~------------------- 462 (759)
.....++....+......+.+. +.+.-......+..... ....
T Consensus 205 ---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~g~ 268 (555)
T 3tbk_A 205 ---------------RDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETE-KLAKDVSEELGKLFQIQNREFGT 268 (555)
T ss_dssp ---------------CSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHH-HHHHTSCHHHHGGGGCCSCCSSS
T ss_pred ---------------ccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHH-HHHHHHHHhhhhhhhcccccccc
Confidence 0000111112222222222222 11111111111110000 0000
Q ss_pred -----------HhhhhcCCcc-------hhHHHHHHHHHHHhcCChhhh----------------hhhccCCCCCCchHH
Q 004347 463 -----------EKVFSAGRGM-------KGKLNNLMVQLRKNCNHPDLL----------------ESAFSDSCFYPPVEQ 508 (759)
Q Consensus 463 -----------~~~~~~~~~~-------~~~l~~~l~~Lrk~~~hp~l~----------------~~~~~~~~~~~~~~~ 508 (759)
.......... ...+......+++. ++...+ ...............
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (555)
T 3tbk_A 269 QKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKY-NDALIISEDAQMTDALNYLKAFFHDVREAAFDETERE 347 (555)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHH
T ss_pred hhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 0000000000 00000000000000 000000 000000000000000
Q ss_pred --------------H----HhhccHHHHHHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHHhc------------Cce
Q 004347 509 --------------I----VEQCGKFRLLDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNEK------------GYE 556 (759)
Q Consensus 509 --------------l----~~~s~K~~~L~~lL~~l~~--~~~kvLIFsq~~~~ld~L~~~L~~~------------g~~ 556 (759)
. ...++|+..|.++|..+.. .++|+||||+++.+++.|..+|... |..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~ 427 (555)
T 3tbk_A 348 LTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRG 427 (555)
T ss_dssp HHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--
T ss_pred HHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecC
Confidence 0 1236799999999998764 4599999999999999999999876 445
Q ss_pred EEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 557 VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 557 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
+..+||+++..+|.+++++|++ ++.++ +|++|+++|+|||+++|++||+||+||||..|.||+|| |+.+++.+|
T Consensus 428 ~~~~~~~~~~~~R~~~~~~F~~-~g~~~-vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~ 501 (555)
T 3tbk_A 428 RTNRATGMTLPAQKCVLEAFRA-SGDNN-ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCF 501 (555)
T ss_dssp -------------------------CCS-EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEE
T ss_pred CcccccccCHHHHHHHHHHHhc-CCCee-EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEE
Confidence 6666779999999999999997 23444 48999999999999999999999999999999999999 667889999
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHHhc
Q 004347 637 RLATAQSVEGRILKRAFSKLKLEHVVIG 664 (759)
Q Consensus 637 rli~~~TvEe~i~~~~~~K~~l~~~vi~ 664 (759)
.|++.++.++. ......|..+.+..+.
T Consensus 502 ~l~~~~~~~~~-~~~~~~~e~~~~~~~~ 528 (555)
T 3tbk_A 502 LLTSSADVIEK-EKANMIKEKIMNESIL 528 (555)
T ss_dssp EEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHH-HHHhhHHHHHHHHHHH
Confidence 99999998888 4555566666666554
No 12
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=1.2e-36 Score=316.96 Aligned_cols=216 Identities=17% Similarity=0.176 Sum_probs=168.3
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhc--CCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCC--C
Q 004347 429 LPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSA--GRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFY--P 504 (759)
Q Consensus 429 LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~--~ 504 (759)
.|++.|++++++||+.|+.+|+.++......+........ .......+.+++++||++||||+|+...+...... .
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~ 99 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRD 99 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccccc
Confidence 4999999999999999999999998654443322111111 11123578899999999999999996443332222 3
Q ss_pred chHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCce
Q 004347 505 PVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 584 (759)
Q Consensus 505 ~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 584 (759)
..+.+++.|||+.+|.++|..+.+.|||||||||++.++|+|+++|..+|++|+|+||++... +++. .+++++
T Consensus 100 ~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~------~~~~~~ 172 (328)
T 3hgt_A 100 VPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA------NDFSCT 172 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSEE
T ss_pred hhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc------ccCCce
Confidence 367899999999999999999999999999999999999999999999999999999996643 2221 145678
Q ss_pred EEEEecccccCCCC-----CCCCCEEEEeCCCCCcchh-hHHhhhhhhc--CCCCceEEEEEeeCCCHHHHHHHHH
Q 004347 585 IFLLSTRAGGLGIN-----LTAADTCILYDSDWNPQMD-LQAMDRCHRI--GQTKPVHVYRLATAQSVEGRILKRA 652 (759)
Q Consensus 585 v~LlsT~agg~GIN-----L~~a~~VI~~D~~wnp~~~-~Qa~gR~~Ri--GQ~k~V~Vyrli~~~TvEe~i~~~~ 652 (759)
++|+ |++||.|+| +++||+||+||++|||+.+ +||+.|+||+ ||+++|.||||++.+|||+.++..-
T Consensus 173 i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~ 247 (328)
T 3hgt_A 173 VHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFG 247 (328)
T ss_dssp EEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHH
T ss_pred EEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHcc
Confidence 8877 668888886 8999999999999999998 9999999999 7899999999999999999998763
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7.9e-36 Score=341.43 Aligned_cols=345 Identities=13% Similarity=0.142 Sum_probs=247.7
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHh--CCCc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRF--VPSV 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~--~p~~ 264 (759)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..+...+ .+++|||||. .+..||.++|.+| +|..
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~ 186 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY-EGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC-SSEEEEEESSHHHHHHHHHHHHHTTSSCGG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC-CCeEEEEECcHHHHHHHHHHHHHhhcCCcc
Confidence 4899999999999886 57899999999999999988777666532 3599999997 5778999999999 5556
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC-CCC
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI-PIG 343 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l-~~~ 343 (759)
.+..++|....... .....+|+|+||+.+..... ....+|++|||||||++.+. .....+..+ ...
T Consensus 187 ~v~~~~~~~~~~~~---------~~~~~~I~i~T~~~l~~~~~--~~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~ 253 (510)
T 2oca_A 187 MIKKIGGGASKDDK---------YKNDAPVVVGTWQTVVKQPK--EWFSQFGMMMNDECHLATGK--SISSIISGLNNCM 253 (510)
T ss_dssp GEEECGGGCCTTGG---------GCTTCSEEEEEHHHHTTSCG--GGGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCC
T ss_pred ceEEEecCCccccc---------cccCCcEEEEeHHHHhhchh--hhhhcCCEEEEECCcCCCcc--cHHHHHHhcccCc
Confidence 77777665432211 22568999999998765521 22236899999999999873 344556777 567
Q ss_pred cEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhh
Q 004347 344 NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKS 423 (759)
Q Consensus 344 ~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k~ 423 (759)
++++||||| .+...+++++..++.|..+... .. ..
T Consensus 254 ~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~~----------~~---~~------------------------------- 288 (510)
T 2oca_A 254 FKFGLSGSL-RDGKANIMQYVGMFGEIFKPVT----------TS---KL------------------------------- 288 (510)
T ss_dssp EEEEEESCG-GGCSSCHHHHHHHHCSEECCCC----------CC------------------------------------
T ss_pred EEEEEEeCC-CCCcccHHHhHHhhCCeEEeeC----------HH---HH-------------------------------
Confidence 889999999 5555666776666655432100 00 00
Q ss_pred HHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCC
Q 004347 424 DVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFY 503 (759)
Q Consensus 424 dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 503 (759)
.-...+++.....+.+.+++....... +. .+.. .+.
T Consensus 289 ~~~~~l~~~~~~~~~~~~~~~~~~~~~------------------~~----~~~~---~~~------------------- 324 (510)
T 2oca_A 289 MEDGQVTELKINSIFLRYPDEFTTKLK------------------GK----TYQE---EIK------------------- 324 (510)
T ss_dssp -------CCEEEEEEEECCHHHHHHHT------------------TC----CHHH---HHH-------------------
T ss_pred hhCCcCCCceEEEEeecCChHHhcccc------------------cc----chHH---HHH-------------------
Confidence 000135666666666777655431000 00 0000 000
Q ss_pred CchHHHHhhccHHHHHHHHHHHHhhC-CCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCC
Q 004347 504 PPVEQIVEQCGKFRLLDRLLARLFAR-NHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSS 582 (759)
Q Consensus 504 ~~~~~l~~~s~K~~~L~~lL~~l~~~-~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 582 (759)
.++....|...+.+++...... +.++|||+. +..++.|...|...+.++..+||+++..+|.++++.|+++.
T Consensus 325 ----~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~-- 397 (510)
T 2oca_A 325 ----IITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK-- 397 (510)
T ss_dssp ----HHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC--
T ss_pred ----HHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC--
Confidence 1111223556666777666554 556677777 88888899999999889999999999999999999999743
Q ss_pred ceEEEEec-ccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCC-ceEEEEEeeCCCHHHH
Q 004347 583 YRIFLLST-RAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTK-PVHVYRLATAQSVEGR 647 (759)
Q Consensus 583 ~~v~LlsT-~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k-~V~Vyrli~~~TvEe~ 647 (759)
+. +|++| .++++|||++.+++||+|+++||+..+.|++||++|.|+.+ .|.||.++...++.++
T Consensus 398 ~~-vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~ 463 (510)
T 2oca_A 398 GI-IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPK 463 (510)
T ss_dssp SC-EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCS
T ss_pred CC-EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhh
Confidence 44 57777 99999999999999999999999999999999999999988 6999999998764443
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.4e-35 Score=352.26 Aligned_cols=427 Identities=15% Similarity=0.167 Sum_probs=224.9
Q ss_pred cccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC---CCCCeEEEECC-ccHHHHHHHHHH
Q 004347 184 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG---LHGPYLVIAPL-STLSNWVNEISR 259 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~---~~~~~LIV~P~-sll~~W~~E~~~ 259 (759)
.+....|+|||.+++.|++. +.++|++++||+|||++++..+......+ ..+++|||+|+ .++.||.+++.+
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 33446899999999999975 78999999999999999887776555432 23789999997 688999999999
Q ss_pred hCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hh-hhcCccEEEEcCcccccChhhHHHH
Q 004347 260 FVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YL-RHYNWKYLVVDEGHRLKNPKCKLLK 335 (759)
Q Consensus 260 ~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l-~~~~~~~lIvDEaH~ikn~~s~~~~ 335 (759)
+++ ++.+..++|+...+...... ...++|+|+||+.+.+.+.. .+ ....|++|||||||++.+.......
T Consensus 84 ~~~~~~~~v~~~~g~~~~~~~~~~~------~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i 157 (696)
T 2ykg_A 84 YFERHGYRVTGISGATAENVPVEQI------VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMI 157 (696)
T ss_dssp HTTTTTCCEEEECSSSCSSSCHHHH------HHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HhccCCceEEEEeCCccccccHHHh------ccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHH
Confidence 987 67888888865322111110 02578999999999887643 22 3456899999999999875532211
Q ss_pred H---Hhc------CCCCcEEEEecCCCCCC-------HHHHHhhhhhccCCCCC----ChHHHHHHhcccC-------CC
Q 004347 336 E---LKY------IPIGNKLLLTGTPLQNN-------LAELWSLLHFILPDIFS----SLEEFQSWFDLSG-------KC 388 (759)
Q Consensus 336 ~---l~~------l~~~~rllLTgTPl~n~-------~~el~sll~fl~p~~~~----~~~~F~~~f~~~~-------~~ 388 (759)
. +.. -+..++|+|||||..++ +..++.++..+....+. .......+...+. ..
T Consensus 158 ~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 237 (696)
T 2ykg_A 158 MFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 237 (696)
T ss_dssp HHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCC
T ss_pred HHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcc
Confidence 1 111 14567899999998654 34455555444433221 1222222222110 00
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhh-
Q 004347 389 NSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFS- 467 (759)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~- 467 (759)
.......... .....+. .....+... |.. +..+..++.....|...+..............
T Consensus 238 ~~~~fs~~~~-----~l~~~i~---------~l~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (696)
T 2ykg_A 238 ISDKFKYIIA-----QLMRDTE---------SLAKRICKD-LEN---LSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK 299 (696)
T ss_dssp SCCHHHHHHH-----HHHHHHH---------HHHHHHSTT-GGG---SSSCCSCCSSSHHHHHHHHHHHHTSCC------
T ss_pred cCChHHHHHH-----HHHHHHH---------HHHHHHHHH-HHH---hhccccccccchhHHHHHHHHHHHHHHhhcccc
Confidence 0000000000 0000111 111111111 000 00111121122222222111000000000000
Q ss_pred -cCCcchhHHHHHHHHHHHhcCChhhhhhhc----------------cCCCCCCchH-HHH------------------h
Q 004347 468 -AGRGMKGKLNNLMVQLRKNCNHPDLLESAF----------------SDSCFYPPVE-QIV------------------E 511 (759)
Q Consensus 468 -~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~----------------~~~~~~~~~~-~l~------------------~ 511 (759)
........+......+++.. +|..+.... ... .....+ .+. .
T Consensus 300 ~~~~~~~~~l~~~~~~l~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 377 (696)
T 2ykg_A 300 DEESRICKALFLYTSHLRKYN-DALIISEHARMKDALDYLKDFFSNVRAA-GFDEIEQDLTQRFEEKLQELESVSRDPSN 377 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTTHHHHHHHHHCGGG
T ss_pred hhhhHHHHHHHHHHHHHHHHh-HHHhccchhhHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 00000011111122222211 221111100 000 011111 111 1
Q ss_pred hccHHHHHHHHHHHHh--hCCCcEEEEccchhHHHHHHHHHHhcC----ceEEEEeC--------CCCHHHHHHHHHHhh
Q 004347 512 QCGKFRLLDRLLARLF--ARNHKVLVFSQWTKILDIMEYYFNEKG----YEVCRIDG--------SVRLDERKRQIQDFN 577 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~--~~~~kvLIFsq~~~~ld~L~~~L~~~g----~~~~~l~G--------~~~~~~R~~~i~~F~ 577 (759)
.+.|+..|.++|.... ..++++||||+++.+++.|..+|...| +++..++| +++..+|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 4679999999998874 357899999999999999999999988 89999954 999999999999999
Q ss_pred c-cCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHH
Q 004347 578 D-VNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGR 647 (759)
Q Consensus 578 ~-~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~ 647 (759)
+ +. ++ +|++|+++|+|||++++++||+||+|||+..|.||+|| +|. ++..+|.|++.+++++.
T Consensus 458 ~~g~--~~-vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 458 ASGD--HN-ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp ---C--CS-CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred hcCC--cc-EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 6 44 33 48999999999999999999999999999999999999 884 67889999999887654
No 15
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=359.32 Aligned_cols=437 Identities=14% Similarity=0.141 Sum_probs=245.1
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC----CCCCeEEEECCc-cHHHH-HHHHHHhC
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG----LHGPYLVIAPLS-TLSNW-VNEISRFV 261 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~----~~~~~LIV~P~s-ll~~W-~~E~~~~~ 261 (759)
.+|+|||.+++.+++. +.++||+++||+|||++++..+..+...+ ..+++|||+|+. ++.|| .+++.+|+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 4799999999999985 78999999999999999888877665432 337999999976 77999 99999999
Q ss_pred CC-ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHH-------HHhhhhcCccEEEEcCcccccChh---
Q 004347 262 PS-VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDA-------RKYLRHYNWKYLVVDEGHRLKNPK--- 330 (759)
Q Consensus 262 p~-~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~-------~~~l~~~~~~~lIvDEaH~ikn~~--- 330 (759)
+. +.+..++|........... ....+|+|+||+.+.+.+ ...+....|++|||||||++.+..
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~~------~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~ 155 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPEV------VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYN 155 (699)
T ss_dssp TTTSCEEEEC----CCCCHHHH------HHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSC
T ss_pred CcCceEEEEeCCcchhhHHHhh------hcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHH
Confidence 86 8888888876432111111 136799999999998654 123455678999999999985422
Q ss_pred hHHHHHHhc--------------CCCCcEEEEecCCCCCC-------HHHHHhhhhhccC-CCCC---ChHHHHHHhccc
Q 004347 331 CKLLKELKY--------------IPIGNKLLLTGTPLQNN-------LAELWSLLHFILP-DIFS---SLEEFQSWFDLS 385 (759)
Q Consensus 331 s~~~~~l~~--------------l~~~~rllLTgTPl~n~-------~~el~sll~fl~p-~~~~---~~~~F~~~f~~~ 385 (759)
......+.. .+..++++|||||..++ ..++..++..+.+ .+.. ....+..++..+
T Consensus 156 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p 235 (699)
T 4gl2_A 156 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP 235 (699)
T ss_dssp SHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCC
T ss_pred HHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCC
Confidence 111111111 15567899999999863 3344555555555 2221 123333333222
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHh-
Q 004347 386 GKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREK- 464 (759)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~- 464 (759)
........... . ......+..+...+..++ .+.+.. .+.. ..|...+...........
T Consensus 236 ~~~~~~~~~~~-~-~~~~~~l~~l~~~i~~~~----------~~~~~~------~~g~---~~~~~~~~~~~~~~~~~~~ 294 (699)
T 4gl2_A 236 CKKFAIADATR-E-DPFKEKLLEIMTRIQTYC----------QMSPMS------DFGT---QPYEQWAIQMEKKAAKEGN 294 (699)
T ss_dssp EEEEEEEC-------CHHHHHHHHHHHHHHHH----------TCCCCS------CSSS---HHHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEccccc-C-ChHHHHHHHHHHHHHHHh----------ccCcch------hccc---hHHHHHHHHHHHHHHHhhh
Confidence 11000000000 0 000011111111111110 010000 0000 011111000000000000
Q ss_pred -----------------hhhcCCc---chhHHHHHHHHHHHhcCChhhhhhhccCCCCCCchHH---------------H
Q 004347 465 -----------------VFSAGRG---MKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQ---------------I 509 (759)
Q Consensus 465 -----------------~~~~~~~---~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~---------------l 509 (759)
....... ....+...+..++..... ................. +
T Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 372 (699)
T 4gl2_A 295 RKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFA--VIEDDLKKPLKLDETDRFLMTLFFENNKMLKRL 372 (699)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 0000000 000000000000000000 00000000000000000 0
Q ss_pred H----hhccHHHHHHHHHHHHhhC---CCcEEEEccchhHHHHHHHHHHhc------CceEEEEeCC--------CCHHH
Q 004347 510 V----EQCGKFRLLDRLLARLFAR---NHKVLVFSQWTKILDIMEYYFNEK------GYEVCRIDGS--------VRLDE 568 (759)
Q Consensus 510 ~----~~s~K~~~L~~lL~~l~~~---~~kvLIFsq~~~~ld~L~~~L~~~------g~~~~~l~G~--------~~~~~ 568 (759)
. ..+.|+..|.++|...... +.++||||+++.+++.|..+|... |+++..+||+ ++..+
T Consensus 373 ~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~e 452 (699)
T 4gl2_A 373 AENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNE 452 (699)
T ss_dssp HTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHH
T ss_pred hhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHH
Confidence 0 0345777788888775443 789999999999999999999987 9999999999 99999
Q ss_pred HHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHH
Q 004347 569 RKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRI 648 (759)
Q Consensus 569 R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i 648 (759)
|.+++++|+++... +|++|+++|+|||++++++||+||+||||..|.||+||++|.| ..++.+...++.+...
T Consensus 453 R~~~~~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~ 525 (699)
T 4gl2_A 453 QKEVISKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIER 525 (699)
T ss_dssp HHHHHHHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHH
T ss_pred HHHHHHHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHH
Confidence 99999999974434 5899999999999999999999999999999999999976655 4555566777755554
Q ss_pred HHHHHHHHHHHHHHhc
Q 004347 649 LKRAFSKLKLEHVVIG 664 (759)
Q Consensus 649 ~~~~~~K~~l~~~vi~ 664 (759)
......+..+....+.
T Consensus 526 ~~~~~~~~~~~~~~~~ 541 (699)
T 4gl2_A 526 ETVNDFREKMMYKAIH 541 (699)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555555554
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5.1e-35 Score=340.55 Aligned_cols=355 Identities=15% Similarity=0.164 Sum_probs=220.7
Q ss_pred cCCccchhHHHHHHHHHHHhhcC-CCeEEEcCCCCcHHHHHHHHHHHHHhCC-------CCCCeEEEEC-CccHHHHH-H
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNG-LNGILADQMGLGKTIQTIAFLAHLKGNG-------LHGPYLVIAP-LSTLSNWV-N 255 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~-~~~ILademGlGKTl~ai~li~~l~~~~-------~~~~~LIV~P-~sll~~W~-~ 255 (759)
.+..|+|||.+++++++..+.++ .+++|+++||+|||++++.++..+...+ ..+++||||| ..++.||. +
T Consensus 175 ~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 45689999999999999877666 4589999999999999999999888776 6789999999 66779999 7
Q ss_pred HHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-----HhhhhcCccEEEEcCcccccChh
Q 004347 256 EISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-----KYLRHYNWKYLVVDEGHRLKNPK 330 (759)
Q Consensus 256 E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~-----~~l~~~~~~~lIvDEaH~ikn~~ 330 (759)
++..|.+.. ..+.+. ......+|+|+||+.+..... ..+....|++|||||||++.+..
T Consensus 255 ~~~~~~~~~--~~~~~~--------------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~ 318 (590)
T 3h1t_A 255 TFTPFGDAR--HKIEGG--------------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD 318 (590)
T ss_dssp CCTTTCSSE--EECCC----------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------
T ss_pred HHHhcchhh--hhhhcc--------------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc
Confidence 888776432 222221 122467999999999876532 12334468999999999998653
Q ss_pred -hHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 004347 331 -CKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKL 409 (759)
Q Consensus 331 -s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L 409 (759)
+.....+..++..++++|||||..+...+++.++.- ..+. .
T Consensus 319 ~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~---~~~~---------------~-------------------- 360 (590)
T 3h1t_A 319 NSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGN---PIYT---------------Y-------------------- 360 (590)
T ss_dssp ---CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCS---CSEE---------------E--------------------
T ss_pred hHHHHHHHHhCCcceEEEeccccccccchhHHHHcCC---ceEe---------------c--------------------
Confidence 444556667788899999999998877666554421 1000 0
Q ss_pred HHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCC
Q 004347 410 HAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNH 489 (759)
Q Consensus 410 ~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 489 (759)
-+.... ....+++.....+..................... .....
T Consensus 361 -------~~~~~i--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------------- 405 (590)
T 3h1t_A 361 -------SLRQGI--DDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR-EIPDG------------------------- 405 (590)
T ss_dssp -------CHHHHH--HHTSSCCEEEEEEEETTCC----------------------------------------------
T ss_pred -------CHHHHh--hCCccCCcEEEEeeeeeecccccccccccccccc-ccccc-------------------------
Confidence 000000 0012344333333333321111111000000000 00000
Q ss_pred hhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHh---hCCCcEEEEccchhHHHHHHHHHHhcCce--------EE
Q 004347 490 PDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLF---ARNHKVLVFSQWTKILDIMEYYFNEKGYE--------VC 558 (759)
Q Consensus 490 p~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~---~~~~kvLIFsq~~~~ld~L~~~L~~~g~~--------~~ 558 (759)
..........+....+...+.+.+..+. ..+.|+||||++...++.+...|...+.. ++
T Consensus 406 ----------~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 475 (590)
T 3h1t_A 406 ----------EYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVA 475 (590)
T ss_dssp -------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEE
T ss_pred ----------cCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEE
Confidence 0000111112222223333333332222 45689999999999999999999876543 78
Q ss_pred EEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCC---CCceEE
Q 004347 559 RIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQ---TKPVHV 635 (759)
Q Consensus 559 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ---~k~V~V 635 (759)
.++|+++. +|++++++|++++....++|+||+++++|||++.+++||+|+++||+..+.|++||++|.|+ +..+.|
T Consensus 476 ~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I 554 (590)
T 3h1t_A 476 RVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNI 554 (590)
T ss_dssp ECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEE
T ss_pred EEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEE
Confidence 89999863 79999999998777778899999999999999999999999999999999999999999995 455899
Q ss_pred EEEee
Q 004347 636 YRLAT 640 (759)
Q Consensus 636 yrli~ 640 (759)
|.++.
T Consensus 555 ~D~~g 559 (590)
T 3h1t_A 555 IDYTG 559 (590)
T ss_dssp EECSS
T ss_pred EecCC
Confidence 98873
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=9.3e-33 Score=304.49 Aligned_cols=329 Identities=17% Similarity=0.206 Sum_probs=226.5
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCeEEEECC-ccHHHHHHHHHHhC---C
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPL-STLSNWVNEISRFV---P 262 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~-~~~~~~~LIV~P~-sll~~W~~E~~~~~---p 262 (759)
..|+|||.+++.+++. +.+++++++||+|||++++..+..... .....++|||||. .++.||.+++.++. |
T Consensus 29 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 104 (391)
T 1xti_A 29 EHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 104 (391)
T ss_dssp CSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCT
T ss_pred CCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCC
Confidence 4699999999998875 788999999999999997666555443 3334589999997 56789999999885 4
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh---hHHHHHHh
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK---CKLLKELK 338 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~---s~~~~~l~ 338 (759)
...+..++|............ ...++|+|+||+.+...... .+....|++|||||||++.+.. ..+...+.
T Consensus 105 ~~~~~~~~g~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~ 179 (391)
T 1xti_A 105 NVKVAVFFGGLSIKKDEEVLK-----KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR 179 (391)
T ss_dssp TCCEEEECTTSCHHHHHHHHH-----HSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCHHHHHHHHh-----cCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHh
Confidence 678888888654433221110 13468999999998876532 2334578999999999997632 22333333
Q ss_pred cCC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 339 YIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 339 ~l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
..+ ...++++||||-.. ..++.. .++.. |..
T Consensus 180 ~~~~~~~~i~~SAT~~~~-~~~~~~-----------------~~~~~------------------------------~~~ 211 (391)
T 1xti_A 180 MTPHEKQVMMFSATLSKE-IRPVCR-----------------KFMQD------------------------------PME 211 (391)
T ss_dssp TSCSSSEEEEEESSCCST-HHHHHH-----------------HHCSS------------------------------CEE
T ss_pred hCCCCceEEEEEeeCCHH-HHHHHH-----------------HHcCC------------------------------CeE
Confidence 443 55679999998532 111100 00000 000
Q ss_pred hhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 418 LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
+.. ...............+.+
T Consensus 212 ~~~-~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 232 (391)
T 1xti_A 212 IFV-DDETKLTLHGLQQYYVKL---------------------------------------------------------- 232 (391)
T ss_dssp EEC-CCCCCCCCTTCEEEEEEC----------------------------------------------------------
T ss_pred EEe-cCccccCcccceEEEEEc----------------------------------------------------------
Confidence 000 000000001111111111
Q ss_pred cCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhh
Q 004347 498 SDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 577 (759)
Q Consensus 498 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 577 (759)
....|...+.+++... .++++||||++...++.+..+|...|+.+..+||+++..+|..+++.|+
T Consensus 233 -------------~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 297 (391)
T 1xti_A 233 -------------KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 297 (391)
T ss_dssp -------------CGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred -------------CchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 0122455556666553 6789999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHH
Q 004347 578 DVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAF 653 (759)
Q Consensus 578 ~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~ 653 (759)
++... +|++|+++++|||++++++||+||+|||+..+.||+||++|.|+...+. .|++.. -+..++....
T Consensus 298 ~~~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~-~~~~~~~~~~ 367 (391)
T 1xti_A 298 DFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDE-NDAKILNDVQ 367 (391)
T ss_dssp TTCCS---EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEE--EEECSH-HHHHHHHHHH
T ss_pred cCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEE--EEEccc-chHHHHHHHH
Confidence 74443 6999999999999999999999999999999999999999999765544 445443 2344444443
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.5e-32 Score=298.39 Aligned_cols=316 Identities=17% Similarity=0.254 Sum_probs=223.1
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCeEEEECCc-cHHHHHHHHHHhCC--C
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLS-TLSNWVNEISRFVP--S 263 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~-~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~ 263 (759)
..|+|||.+++.+++. +.++++.++||+|||++++..+..... .....++|||||.. +..||.+++.++.+ +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG 117 (400)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 4799999999999986 788999999999999987665554443 33445899999975 66899999999876 4
Q ss_pred ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh-hH-HHHHHhcC
Q 004347 264 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK-CK-LLKELKYI 340 (759)
Q Consensus 264 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~-s~-~~~~l~~l 340 (759)
..+..++|........... ...++|+|+||+.+...... .+...++++|||||||++.+.. .. +...+..+
T Consensus 118 ~~~~~~~g~~~~~~~~~~~------~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~ 191 (400)
T 1s2m_A 118 ISCMVTTGGTNLRDDILRL------NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFL 191 (400)
T ss_dssp CCEEEECSSSCHHHHHHHT------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTS
T ss_pred ceEEEEeCCcchHHHHHHh------cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhC
Confidence 5677777776554433221 24678999999998766533 2334468999999999987643 22 23333344
Q ss_pred C-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 004347 341 P-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLR 419 (759)
Q Consensus 341 ~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lR 419 (759)
+ ....+++|||+-.. ..++ + ..++. .|+.+.
T Consensus 192 ~~~~~~i~lSAT~~~~-~~~~---~--------------~~~~~------------------------------~~~~~~ 223 (400)
T 1s2m_A 192 PPTHQSLLFSATFPLT-VKEF---M--------------VKHLH------------------------------KPYEIN 223 (400)
T ss_dssp CSSCEEEEEESCCCHH-HHHH---H--------------HHHCS------------------------------SCEEES
T ss_pred CcCceEEEEEecCCHH-HHHH---H--------------HHHcC------------------------------CCeEEE
Confidence 3 45679999997311 0000 0 00000 000000
Q ss_pred hhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccC
Q 004347 420 RMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSD 499 (759)
Q Consensus 420 R~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~ 499 (759)
... . ...+........+
T Consensus 224 ~~~-~--~~~~~~~~~~~~~------------------------------------------------------------ 240 (400)
T 1s2m_A 224 LME-E--LTLKGITQYYAFV------------------------------------------------------------ 240 (400)
T ss_dssp CCS-S--CBCTTEEEEEEEC------------------------------------------------------------
T ss_pred ecc-c--cccCCceeEEEEe------------------------------------------------------------
Confidence 000 0 0011111111111
Q ss_pred CCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhcc
Q 004347 500 SCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV 579 (759)
Q Consensus 500 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 579 (759)
....|+..+..++... .+.++||||++...++.+..+|...|+.+..+||+++..+|..+++.|+++
T Consensus 241 -----------~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 307 (400)
T 1s2m_A 241 -----------EERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG 307 (400)
T ss_dssp -----------CGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred -----------chhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC
Confidence 0123555566666543 567999999999999999999999999999999999999999999999974
Q ss_pred CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 580 NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 580 ~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
... +|++|+++++|||++++++||+||+|||+..+.||+||++|.|+.. .+|.|++.+
T Consensus 308 ~~~---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~ 365 (400)
T 1s2m_A 308 KVR---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWN 365 (400)
T ss_dssp SSS---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGG
T ss_pred CCc---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccc
Confidence 433 5999999999999999999999999999999999999999999754 556667665
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-32 Score=299.02 Aligned_cols=312 Identities=19% Similarity=0.225 Sum_probs=223.3
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC--Cc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP--SV 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~~ 264 (759)
..|+|||.+++.+++. .+.+++++++||+|||++++..+..+...+...++|||||.. +..||.+++.++++ ..
T Consensus 27 ~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp CSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 4799999999999875 236889999999999999887777666555567899999975 66899999999865 45
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh--hHHHHHHhcC-
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKLLKELKYI- 340 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~--s~~~~~l~~l- 340 (759)
.+..++|........... ...+|+|+||+.+...... .+...+|++||+||||++.+.. ..+...+..+
T Consensus 104 ~v~~~~~~~~~~~~~~~~-------~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~ 176 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIKAL-------KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN 176 (367)
T ss_dssp CEEEECTTSCHHHHHHHH-------HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC
T ss_pred eEEEEECCcchHHHHhhc-------CCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC
Confidence 667777765543332221 2568999999998776532 2334568999999999987644 3344445555
Q ss_pred CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhh
Q 004347 341 PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRR 420 (759)
Q Consensus 341 ~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR 420 (759)
+..+.+++||||.......+ ..++... ..
T Consensus 177 ~~~~~i~~SAT~~~~~~~~~------------------~~~~~~~------------------------------~~--- 205 (367)
T 1hv8_A 177 KDKRILLFSATMPREILNLA------------------KKYMGDY------------------------------SF--- 205 (367)
T ss_dssp SSCEEEEECSSCCHHHHHHH------------------HHHCCSE------------------------------EE---
T ss_pred CCceEEEEeeccCHHHHHHH------------------HHHcCCC------------------------------eE---
Confidence 35567999999942211100 0000000 00
Q ss_pred hhhHHhhhCCCce-EEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccC
Q 004347 421 MKSDVEQMLPRKK-EIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSD 499 (759)
Q Consensus 421 ~k~dv~~~LP~k~-e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~ 499 (759)
+....+... ...+.+ .
T Consensus 206 ----~~~~~~~~~~~~~~~~--~--------------------------------------------------------- 222 (367)
T 1hv8_A 206 ----IKAKINANIEQSYVEV--N--------------------------------------------------------- 222 (367)
T ss_dssp ----EECCSSSSSEEEEEEC--C---------------------------------------------------------
T ss_pred ----EEecCCCCceEEEEEe--C---------------------------------------------------------
Confidence 000000011 111111 0
Q ss_pred CCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhcc
Q 004347 500 SCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV 579 (759)
Q Consensus 500 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 579 (759)
...|+..+.+++. ..+.++||||++...++.+...|...|+.+..+||+++..+|.++++.|+++
T Consensus 223 ------------~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 287 (367)
T 1hv8_A 223 ------------ENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK 287 (367)
T ss_dssp ------------GGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT
T ss_pred ------------hHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC
Confidence 1123444444443 4678999999999999999999999999999999999999999999999974
Q ss_pred CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 580 NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 580 ~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
... +|++|+++++|+|++++++||+||+|||+..+.||+||++|.|+...+ +.+++...
T Consensus 288 ~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~ 346 (367)
T 1hv8_A 288 KIR---ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRRE 346 (367)
T ss_dssp SSS---EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTS
T ss_pred CCe---EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHH
Confidence 333 599999999999999999999999999999999999999999987654 44566553
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.8e-32 Score=301.83 Aligned_cols=319 Identities=20% Similarity=0.249 Sum_probs=224.8
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCeEEEECCc-cHHHHHHHHHHhCC--
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~-~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 262 (759)
...|+|||.+++.+++. +.++|++++||+|||++.+..+..... .....++|||||+. +..||.+++.++..
T Consensus 57 ~~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 132 (410)
T 2j0s_A 57 FEKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM 132 (410)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccC
Confidence 34699999999999875 788999999999999987765554433 33457899999976 66889999999874
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh--hHHHHHHhc
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKLLKELKY 339 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~--s~~~~~l~~ 339 (759)
...+..+.|............ ...+|+|+||+.+...+.. .+....+++|||||||++.+.. ..+...+..
T Consensus 133 ~~~~~~~~g~~~~~~~~~~~~------~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~ 206 (410)
T 2j0s_A 133 NVQCHACIGGTNVGEDIRKLD------YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRY 206 (410)
T ss_dssp TCCEEEECTTSCHHHHHHHHH------HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTT
T ss_pred CeEEEEEECCCCHHHHHHHhh------cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHh
Confidence 355666666654433322221 2468999999998766533 2444568999999999987644 344445555
Q ss_pred CC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHh
Q 004347 340 IP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 418 (759)
Q Consensus 340 l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~l 418 (759)
++ ....+++||||-. ++..++...... |..+
T Consensus 207 ~~~~~~~i~~SAT~~~----~~~~~~~~~~~~--------------------------------------------~~~~ 238 (410)
T 2j0s_A 207 LPPATQVVLISATLPH----EILEMTNKFMTD--------------------------------------------PIRI 238 (410)
T ss_dssp SCTTCEEEEEESCCCH----HHHTTGGGTCSS--------------------------------------------CEEE
T ss_pred CccCceEEEEEcCCCH----HHHHHHHHHcCC--------------------------------------------CEEE
Confidence 53 4567999999832 222221111000 0000
Q ss_pred hhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhcc
Q 004347 419 RRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFS 498 (759)
Q Consensus 419 RR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 498 (759)
... .....++......+.+.-.
T Consensus 239 ~~~--~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 260 (410)
T 2j0s_A 239 LVK--RDELTLEGIKQFFVAVERE-------------------------------------------------------- 260 (410)
T ss_dssp CCC--GGGCSCTTEEEEEEEESST--------------------------------------------------------
T ss_pred Eec--CccccCCCceEEEEEeCcH--------------------------------------------------------
Confidence 000 0000111222222222111
Q ss_pred CCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhc
Q 004347 499 DSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFND 578 (759)
Q Consensus 499 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 578 (759)
..|+..|.+++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|++
T Consensus 261 --------------~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 324 (410)
T 2j0s_A 261 --------------EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 324 (410)
T ss_dssp --------------THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH
T ss_pred --------------HhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC
Confidence 11444455555543 35699999999999999999999999999999999999999999999998
Q ss_pred cCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 579 VNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 579 ~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
+... +|++|+++++|||++.+++||+||+|||+..|.||+||++|.|+.. .++.|++..
T Consensus 325 g~~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 383 (410)
T 2j0s_A 325 GASR---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKND 383 (410)
T ss_dssp TSSC---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGG
T ss_pred CCCC---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHH
Confidence 5433 6899999999999999999999999999999999999999999764 555666664
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.6e-32 Score=291.14 Aligned_cols=314 Identities=16% Similarity=0.173 Sum_probs=215.7
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC--C
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP--S 263 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~ 263 (759)
...|+|||.+++.+++. +.++++.++||+|||++++..+... ..++|||||.. ++.||.+++.++.+ +
T Consensus 14 ~~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 84 (337)
T 2z0m_A 14 FKNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQVASHIRDIGRYMD 84 (337)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Confidence 35799999999999875 7899999999999999877665442 46899999975 66899999999865 3
Q ss_pred ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh--hHHHHHHhcC
Q 004347 264 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKLLKELKYI 340 (759)
Q Consensus 264 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~--s~~~~~l~~l 340 (759)
..+..++|........... ...+|+|+||+.+.+.+.. .+...+|++||+||||++.+.. ..+...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~-------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 157 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQINRV-------RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQT 157 (337)
T ss_dssp CCEEEECTTSCHHHHHHHH-------TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHC
T ss_pred CcEEEEECCcchHHHHhhc-------CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhC
Confidence 5677777765444332221 2478999999998876532 2334568999999999986433 3344445555
Q ss_pred CCCc-EEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 004347 341 PIGN-KLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLR 419 (759)
Q Consensus 341 ~~~~-rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lR 419 (759)
.... .+++||||-... ... +..++.... .+.
T Consensus 158 ~~~~~~~~~SAT~~~~~----~~~--------------~~~~~~~~~------------------------------~~~ 189 (337)
T 2z0m_A 158 SNRKITGLFSATIPEEI----RKV--------------VKDFITNYE------------------------------EIE 189 (337)
T ss_dssp TTCSEEEEEESCCCHHH----HHH--------------HHHHSCSCE------------------------------EEE
T ss_pred CcccEEEEEeCcCCHHH----HHH--------------HHHhcCCce------------------------------eee
Confidence 5444 467899993211 110 011110000 000
Q ss_pred hhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccC
Q 004347 420 RMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSD 499 (759)
Q Consensus 420 R~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~ 499 (759)
. ....+......+.+.... ..
T Consensus 190 ~-----~~~~~~~~~~~~~~~~~~--~~---------------------------------------------------- 210 (337)
T 2z0m_A 190 A-----CIGLANVEHKFVHVKDDW--RS---------------------------------------------------- 210 (337)
T ss_dssp C-----SGGGGGEEEEEEECSSSS--HH----------------------------------------------------
T ss_pred c-----ccccCCceEEEEEeChHH--HH----------------------------------------------------
Confidence 0 000111111222221110 00
Q ss_pred CCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhcc
Q 004347 500 SCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV 579 (759)
Q Consensus 500 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 579 (759)
....+. ...+.++||||++...++.+...|. .+..+||+++..+|.+++++|+++
T Consensus 211 -------------------~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~ 265 (337)
T 2z0m_A 211 -------------------KVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREG 265 (337)
T ss_dssp -------------------HHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTT
T ss_pred -------------------HHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcC
Confidence 001111 1357899999999999999998886 578899999999999999999974
Q ss_pred CCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHH
Q 004347 580 NSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRA 652 (759)
Q Consensus 580 ~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~ 652 (759)
... +|++|+++++|||++.+++||+||+|||+..+.|++||++|.|+...+.+|.. ....+...|.+..
T Consensus 266 ~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 266 EYD---MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp SCS---EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred CCc---EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 433 59999999999999999999999999999999999999999999888777766 4445555555443
No 22
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.98 E-value=3.6e-31 Score=296.26 Aligned_cols=316 Identities=17% Similarity=0.221 Sum_probs=219.5
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhCC-----CCCCeEEEECCc-cHHHHHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNG-----LHGPYLVIAPLS-TLSNWVNEISR 259 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~~-----~~~~~LIV~P~s-ll~~W~~E~~~ 259 (759)
...++|+|..++..++. +.++|+..+||+|||++.+ .++..+...+ ...++|||||+. +..||.+++.+
T Consensus 76 ~~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 151 (434)
T 2db3_A 76 YKIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARK 151 (434)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHH
Confidence 34799999999999875 8899999999999999854 4555565532 235799999976 66889999999
Q ss_pred hCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccChh--hHHH
Q 004347 260 FVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNPK--CKLL 334 (759)
Q Consensus 260 ~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~~--s~~~ 334 (759)
+.. ...+.+++|........... ...++|+|+|++.+...+.. .+...++++||+||||++.+.. ..+.
T Consensus 152 ~~~~~~~~~~~~~gg~~~~~~~~~l------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~ 225 (434)
T 2db3_A 152 FAFESYLKIGIVYGGTSFRHQNECI------TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMR 225 (434)
T ss_dssp HTTTSSCCCCEECTTSCHHHHHHHH------TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred HhccCCcEEEEEECCCCHHHHHHHh------hcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHH
Confidence 874 34555666655433322221 14679999999999776532 2334567999999999987543 3444
Q ss_pred HHHhcC---CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 004347 335 KELKYI---PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHA 411 (759)
Q Consensus 335 ~~l~~l---~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 411 (759)
+.+..+ .....+++|||+- .++..+......+
T Consensus 226 ~i~~~~~~~~~~q~l~~SAT~~----~~~~~~~~~~l~~----------------------------------------- 260 (434)
T 2db3_A 226 RIMTHVTMRPEHQTLMFSATFP----EEIQRMAGEFLKN----------------------------------------- 260 (434)
T ss_dssp HHHHCTTSCSSCEEEEEESCCC----HHHHHHHHTTCSS-----------------------------------------
T ss_pred HHHHhcCCCCCceEEEEeccCC----HHHHHHHHHhccC-----------------------------------------
Confidence 444443 3456799999972 1111111100000
Q ss_pred HhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChh
Q 004347 412 ILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPD 491 (759)
Q Consensus 412 il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~ 491 (759)
+..+. . .......+......+.+.
T Consensus 261 ---~~~i~-~-~~~~~~~~~i~~~~~~~~--------------------------------------------------- 284 (434)
T 2db3_A 261 ---YVFVA-I-GIVGGACSDVKQTIYEVN--------------------------------------------------- 284 (434)
T ss_dssp ---CEEEE-E-SSTTCCCTTEEEEEEECC---------------------------------------------------
T ss_pred ---CEEEE-e-ccccccccccceEEEEeC---------------------------------------------------
Confidence 00000 0 000000111111111111
Q ss_pred hhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHH
Q 004347 492 LLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKR 571 (759)
Q Consensus 492 l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~ 571 (759)
...|...|.+++.. .+.++||||+....++.+..+|...|+++..+||++++.+|.+
T Consensus 285 --------------------~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 341 (434)
T 2db3_A 285 --------------------KYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQ 341 (434)
T ss_dssp --------------------GGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 11244555555554 3456999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeC
Q 004347 572 QIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA 641 (759)
Q Consensus 572 ~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 641 (759)
++++|+++... +|++|+++++|||++++++||+||+||++..|.||+||++|.|+... ++.|++.
T Consensus 342 ~l~~F~~g~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~--a~~~~~~ 406 (434)
T 2db3_A 342 ALRDFKNGSMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGR--ATSFFDP 406 (434)
T ss_dssp HHHHHHTSSCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEE--EEEEECT
T ss_pred HHHHHHcCCCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCE--EEEEEec
Confidence 99999975444 59999999999999999999999999999999999999999997654 4445653
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=8.2e-31 Score=288.83 Aligned_cols=316 Identities=18% Similarity=0.238 Sum_probs=214.9
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHH-HhCCCCCCeEEEECCc-cHHHHHHHHHHhCC--
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l-~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 262 (759)
...|+|||.+++.+++. .++.++|++++||+|||++++..+... ...+..+++|||||.. ++.||.+++.++..
T Consensus 25 ~~~~~~~Q~~~i~~~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 102 (395)
T 3pey_A 25 FQKPSKIQERALPLLLH--NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFT 102 (395)
T ss_dssp CCSCCHHHHHHHHHHHC--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhccc
Confidence 35799999999999875 223789999999999999977555444 3344566899999977 66889999998763
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh---hhHHHHHHh
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP---KCKLLKELK 338 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~---~s~~~~~l~ 338 (759)
...+....+..... ......+|+|+|++.+...+.. .+...++++||+||||++.+. .......+.
T Consensus 103 ~~~~~~~~~~~~~~----------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 172 (395)
T 3pey_A 103 KITSQLIVPDSFEK----------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKR 172 (395)
T ss_dssp CCCEEEESTTSSCT----------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHH
T ss_pred CeeEEEEecCchhh----------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHH
Confidence 34555555543221 1223678999999998776533 233456899999999998642 222333334
Q ss_pred cCC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 004347 339 YIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFL 417 (759)
Q Consensus 339 ~l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~ 417 (759)
.++ ....+++||||-.. +..+...+.+. + ..
T Consensus 173 ~~~~~~~~i~~SAT~~~~----~~~~~~~~~~~--------------~------------------------------~~ 204 (395)
T 3pey_A 173 FLPKDTQLVLFSATFADA----VRQYAKKIVPN--------------A------------------------------NT 204 (395)
T ss_dssp TSCTTCEEEEEESCCCHH----HHHHHHHHSCS--------------C------------------------------EE
T ss_pred hCCCCcEEEEEEecCCHH----HHHHHHHhCCC--------------C------------------------------eE
Confidence 443 45679999998311 11111100000 0 00
Q ss_pred hhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhc
Q 004347 418 LRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAF 497 (759)
Q Consensus 418 lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 497 (759)
+.... .....+......+.+. ..
T Consensus 205 ~~~~~--~~~~~~~~~~~~~~~~-~~------------------------------------------------------ 227 (395)
T 3pey_A 205 LELQT--NEVNVDAIKQLYMDCK-NE------------------------------------------------------ 227 (395)
T ss_dssp ECCCG--GGCSCTTEEEEEEECS-SH------------------------------------------------------
T ss_pred EEccc--cccccccccEEEEEcC-ch------------------------------------------------------
Confidence 00000 0000111111111111 11
Q ss_pred cCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhh
Q 004347 498 SDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 577 (759)
Q Consensus 498 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 577 (759)
..|...+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|.++++.|+
T Consensus 228 ---------------~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 290 (395)
T 3pey_A 228 ---------------ADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR 290 (395)
T ss_dssp ---------------HHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 11223333333322 4679999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCCCCCEEEEeCCCC------CcchhhHHhhhhhhcCCCCceEEEEEeeC
Q 004347 578 DVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDW------NPQMDLQAMDRCHRIGQTKPVHVYRLATA 641 (759)
Q Consensus 578 ~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~w------np~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 641 (759)
++... +|++|+++++|||++++++||+||+|| |+..+.|++||++|.|+...+ +.|+..
T Consensus 291 ~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~ 355 (395)
T 3pey_A 291 EGRSK---VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVA--ISFVHD 355 (395)
T ss_dssp TTSCC---EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS
T ss_pred CCCCC---EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceE--EEEEec
Confidence 74433 599999999999999999999999999 999999999999999976544 444544
No 24
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.4e-31 Score=297.41 Aligned_cols=320 Identities=18% Similarity=0.210 Sum_probs=212.1
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCeEEEECCc-cHHHHHHHHHHhCC--
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~-~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 262 (759)
...++|||.+++.+++. +.++|++++||+|||++++..+..... ....+++|||||.. +..||.+++.++..
T Consensus 60 ~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 135 (414)
T 3eiq_A 60 FEKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM 135 (414)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGS
T ss_pred CCCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhccc
Confidence 45799999999998875 788999999999999996655554433 33556899999976 66889999999863
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh--hhHHHHHHhc
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP--KCKLLKELKY 339 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~--~s~~~~~l~~ 339 (759)
...+..+.|............ ...++|+|+|++.+...+.. .+....+++||+||||++.+. ...+...+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 210 (414)
T 3eiq_A 136 GASCHACIGGTNVRAEVQKLQ-----MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 210 (414)
T ss_dssp CCCEEECCCCTTHHHHHHHHT-----TTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTT
T ss_pred CceEEEEECCcchHHHHHHHh-----cCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHh
Confidence 445555566554444333221 24678999999998876533 334456899999999998643 3455666666
Q ss_pred CC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHh
Q 004347 340 IP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 418 (759)
Q Consensus 340 l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~l 418 (759)
++ ....+++||||-.+ +..++...... |..+
T Consensus 211 ~~~~~~~i~~SAT~~~~----~~~~~~~~~~~--------------------------------------------~~~~ 242 (414)
T 3eiq_A 211 LNSNTQVVLLSATMPSD----VLEVTKKFMRD--------------------------------------------PIRI 242 (414)
T ss_dssp SCTTCEEEEECSCCCHH----HHHHHTTTCSS--------------------------------------------CEEE
T ss_pred CCCCCeEEEEEEecCHH----HHHHHHHHcCC--------------------------------------------CEEE
Confidence 64 45679999998321 11111000000 0000
Q ss_pred hhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhcc
Q 004347 419 RRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFS 498 (759)
Q Consensus 419 RR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 498 (759)
..... ....+......+.+..
T Consensus 243 ~~~~~--~~~~~~~~~~~~~~~~--------------------------------------------------------- 263 (414)
T 3eiq_A 243 LVKKE--ELTLEGIRQFYINVER--------------------------------------------------------- 263 (414)
T ss_dssp CCCCC--CCCTTSCCEEEEECSS---------------------------------------------------------
T ss_pred EecCC--ccCCCCceEEEEEeCh---------------------------------------------------------
Confidence 00000 0000111111111111
Q ss_pred CCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhc
Q 004347 499 DSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFND 578 (759)
Q Consensus 499 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 578 (759)
...|+..+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|++
T Consensus 264 -------------~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 328 (414)
T 3eiq_A 264 -------------EEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 328 (414)
T ss_dssp -------------STTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC
T ss_pred -------------HHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 012455555555543 46799999999999999999999999999999999999999999999987
Q ss_pred cCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 579 VNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 579 ~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
+. .+ +|++|+++++|||++++++||+||+|||+..|.||+||++|.|+.. .+|.|++.+
T Consensus 329 g~--~~-vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 329 GS--SR-VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp C------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred CC--Cc-EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 43 33 5999999999999999999999999999999999999999999765 456677765
No 25
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=287.17 Aligned_cols=319 Identities=18% Similarity=0.257 Sum_probs=217.1
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhCCC------------------CCCeEEEECC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNGL------------------HGPYLVIAPL 247 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~~~------------------~~~~LIV~P~ 247 (759)
...|+|+|.+++..++. +.++|+..+||+|||++.+ .++..+...+. ...+|||+|+
T Consensus 35 ~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 110 (417)
T 2i4i_A 35 YTRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPT 110 (417)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSS
T ss_pred CCCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCc
Confidence 35899999999998764 7899999999999998754 45555543221 2468999997
Q ss_pred c-cHHHHHHHHHHhCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCc
Q 004347 248 S-TLSNWVNEISRFVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEG 323 (759)
Q Consensus 248 s-ll~~W~~E~~~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEa 323 (759)
. +..||.+++.++.. .+.+..++|........... ....+|+|+|++.+...+.. .+....+++||||||
T Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEa 184 (417)
T 2i4i_A 111 RELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL------ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEA 184 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH------TTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSH
T ss_pred HHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh------hCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEECh
Confidence 5 66889999998753 46777777765544433322 13578999999999876532 233346789999999
Q ss_pred ccccCh--hhHHHHHHhc--CC---CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHH
Q 004347 324 HRLKNP--KCKLLKELKY--IP---IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEE 396 (759)
Q Consensus 324 H~ikn~--~s~~~~~l~~--l~---~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~ 396 (759)
|++... ...+...+.. +. ....+++||||-.+ ..+ ++. .++..+
T Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~-~~~---~~~--------------~~~~~~----------- 235 (417)
T 2i4i_A 185 DRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKE-IQM---LAR--------------DFLDEY----------- 235 (417)
T ss_dssp HHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHH-HHH---HHH--------------HHCSSC-----------
T ss_pred hHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHH-HHH---HHH--------------HHcCCC-----------
Confidence 998643 2333333332 22 34579999998321 111 110 000000
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHH
Q 004347 397 LEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKL 476 (759)
Q Consensus 397 ~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l 476 (759)
..+. .. ......+......+++..
T Consensus 236 -------------------~~~~-~~-~~~~~~~~i~~~~~~~~~----------------------------------- 259 (417)
T 2i4i_A 236 -------------------IFLA-VG-RVGSTSENITQKVVWVEE----------------------------------- 259 (417)
T ss_dssp -------------------EEEE-EC-----CCSSEEEEEEECCG-----------------------------------
T ss_pred -------------------EEEE-eC-CCCCCccCceEEEEEecc-----------------------------------
Confidence 0000 00 000001111112222211
Q ss_pred HHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCce
Q 004347 477 NNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYE 556 (759)
Q Consensus 477 ~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~ 556 (759)
..|...+.+++... ..+.++||||+....++.+..+|...|+.
T Consensus 260 ------------------------------------~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~ 302 (417)
T 2i4i_A 260 ------------------------------------SDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYA 302 (417)
T ss_dssp ------------------------------------GGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred ------------------------------------HhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCC
Confidence 12444445555432 35789999999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 557 VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 557 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
+..+||+++..+|.++++.|+++... +|++|+++++|||++.+++||+||+||++..|.||+||++|.|+. -.+|
T Consensus 303 ~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~ 377 (417)
T 2i4i_A 303 CTSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL--GLAT 377 (417)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC--EEEE
T ss_pred eeEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC--ceEE
Confidence 99999999999999999999975444 699999999999999999999999999999999999999999976 4555
Q ss_pred EEeeCC
Q 004347 637 RLATAQ 642 (759)
Q Consensus 637 rli~~~ 642 (759)
.|++..
T Consensus 378 ~~~~~~ 383 (417)
T 2i4i_A 378 SFFNER 383 (417)
T ss_dssp EEECGG
T ss_pred EEEccc
Confidence 566654
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=5.4e-32 Score=298.54 Aligned_cols=318 Identities=17% Similarity=0.217 Sum_probs=114.9
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHH-HHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC--
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAF-LAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~l-i~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 262 (759)
...|+|||.+++.+++. +.++++.++||+|||++++.. +..+......+++|||||.. +..||.+++.++.+
T Consensus 41 ~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 116 (394)
T 1fuu_A 41 FEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM 116 (394)
T ss_dssp CCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 35899999999999986 788999999999999985544 44443444556899999974 67899999999875
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccC--hhhHHHHHHhc
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKCKLLKELKY 339 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn--~~s~~~~~l~~ 339 (759)
+..+..++|........... ...+|+|+||+.+...+.. .+...+|++||+||||++.+ ....+...+..
T Consensus 117 ~~~~~~~~g~~~~~~~~~~~-------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~ 189 (394)
T 1fuu_A 117 DIKVHACIGGTSFVEDAEGL-------RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 189 (394)
T ss_dssp CCCEEEECSSCCHHHHHHHH-------HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred CeeEEEEeCCCchHHHHhhc-------CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHh
Confidence 46677777765443322211 1468999999998776532 23345789999999999853 33444555555
Q ss_pred CC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHh
Q 004347 340 IP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 418 (759)
Q Consensus 340 l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~l 418 (759)
++ ..+.+++||||-.. ..++ + ..+
T Consensus 190 ~~~~~~~i~~SAT~~~~-~~~~---~--------------~~~------------------------------------- 214 (394)
T 1fuu_A 190 LPPTTQVVLLSATMPND-VLEV---T--------------TKF------------------------------------- 214 (394)
T ss_dssp SCTTCEEEEECSSCCHH-HHHH---H--------------HHH-------------------------------------
T ss_pred CCCCceEEEEEEecCHH-HHHH---H--------------HHh-------------------------------------
Confidence 54 45679999998321 0000 0 000
Q ss_pred hhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhcc
Q 004347 419 RRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFS 498 (759)
Q Consensus 419 RR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 498 (759)
+..... +.+.-..... ..+ ... .. .
T Consensus 215 ----------~~~~~~--~~~~~~~~~~---~~~-----~~~-------------------~~----~------------ 239 (394)
T 1fuu_A 215 ----------MRNPVR--ILVKKDELTL---EGI-----KQF-------------------YV----N------------ 239 (394)
T ss_dssp ----------CCSCEE--EEECC---------------------------------------------------------
T ss_pred ----------cCCCeE--EEecCccccC---CCc-----eEE-------------------EE----E------------
Confidence 000000 0000000000 000 000 00 0
Q ss_pred CCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhc
Q 004347 499 DSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFND 578 (759)
Q Consensus 499 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 578 (759)
......|...+..++... .+.++||||++...++.+...|...|+.+..+||+++..+|.++++.|++
T Consensus 240 ----------~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 307 (394)
T 1fuu_A 240 ----------VEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS 307 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------cCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC
Confidence 000011334444444432 45789999999999999999999999999999999999999999999987
Q ss_pred cCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 579 VNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 579 ~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
+. .. +|++|+++++|+|++++++||+||+||++..+.|++||++|.|+...+. .|++..
T Consensus 308 ~~--~~-vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~ 366 (394)
T 1fuu_A 308 GS--SR-ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAI--NFVTNE 366 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred CC--Cc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEE--EEEchh
Confidence 43 33 6899999999999999999999999999999999999999999766544 455554
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=1.3e-29 Score=281.22 Aligned_cols=329 Identities=18% Similarity=0.244 Sum_probs=219.2
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHH-HHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhC---
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFV--- 261 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li-~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~--- 261 (759)
...++|||.+++..++. ..+.++|+..+||+|||++++..+ ..+...+..+++|||+|.. +..||.+.+.++.
T Consensus 45 ~~~~~~~Q~~~i~~~~~--~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 122 (412)
T 3fht_A 45 FNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 122 (412)
T ss_dssp CCSCCHHHHHHHHHHHS--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHhc--CCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhc
Confidence 35799999999998875 234789999999999999975444 4444444455899999977 5577877777664
Q ss_pred CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccC---hhhHHHHH
Q 004347 262 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKN---PKCKLLKE 336 (759)
Q Consensus 262 p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn---~~s~~~~~ 336 (759)
+...+....+..... .......+|+|+|++.+...+.. .+...++++|||||||++.. ........
T Consensus 123 ~~~~~~~~~~~~~~~---------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~ 193 (412)
T 3fht_A 123 PELKLAYAVRGNKLE---------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 193 (412)
T ss_dssp TTCCEEEECTTCCCC---------TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHH
T ss_pred ccceEEEeecCcchh---------hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHH
Confidence 566666666654221 11234678999999999766522 33335689999999998853 22233333
Q ss_pred HhcCC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 004347 337 LKYIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRP 415 (759)
Q Consensus 337 l~~l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p 415 (759)
+..++ ....+++||||-. +++.++....+. |
T Consensus 194 ~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~--------------------------------------------~ 225 (412)
T 3fht_A 194 QRMLPRNCQMLLFSATFED----SVWKFAQKVVPD--------------------------------------------P 225 (412)
T ss_dssp HHTSCTTCEEEEEESCCCH----HHHHHHHHHSSS--------------------------------------------C
T ss_pred HhhCCCCceEEEEEeecCH----HHHHHHHHhcCC--------------------------------------------C
Confidence 44443 3467999999832 111111111000 0
Q ss_pred HHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhh
Q 004347 416 FLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLES 495 (759)
Q Consensus 416 ~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~ 495 (759)
..+.-. ......+......+.+...
T Consensus 226 ~~~~~~--~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 250 (412)
T 3fht_A 226 NVIKLK--REEETLDTIKQYYVLCSSR----------------------------------------------------- 250 (412)
T ss_dssp EEECCC--GGGSSCTTEEEEEEECSSH-----------------------------------------------------
T ss_pred eEEeec--cccccccCceEEEEEcCCh-----------------------------------------------------
Confidence 000000 0000111112222222110
Q ss_pred hccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHH
Q 004347 496 AFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQD 575 (759)
Q Consensus 496 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 575 (759)
..|+..+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.
T Consensus 251 -----------------~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 311 (412)
T 3fht_A 251 -----------------DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 311 (412)
T ss_dssp -----------------HHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHH
Confidence 11344444444443 46799999999999999999999999999999999999999999999
Q ss_pred hhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCc------chhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHH
Q 004347 576 FNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNP------QMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRIL 649 (759)
Q Consensus 576 F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp------~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~ 649 (759)
|+++... +|++|+++++|||++++++||+||+||++ ..|.||+||++|.|+.. .+|.|+... -+..++
T Consensus 312 f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~-~~~~~~ 385 (412)
T 3fht_A 312 FREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG--LAVNMVDSK-HSMNIL 385 (412)
T ss_dssp HHTTSCS---EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCE--EEEEEECSH-HHHHHH
T ss_pred HHCCCCc---EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCc--eEEEEEcCh-hhHHHH
Confidence 9974433 59999999999999999999999999987 58999999999999654 444555442 234444
Q ss_pred HHHHH
Q 004347 650 KRAFS 654 (759)
Q Consensus 650 ~~~~~ 654 (759)
.....
T Consensus 386 ~~i~~ 390 (412)
T 3fht_A 386 NRIQE 390 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=7.5e-30 Score=291.44 Aligned_cols=307 Identities=18% Similarity=0.182 Sum_probs=217.8
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCC
Q 004347 185 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPS 263 (759)
Q Consensus 185 ~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~ 263 (759)
+....++|+|.+++..++. +.++++..+||+|||+..+..+ +.. .+++|||+|+. ++.+|.+.+..+ +
T Consensus 21 ~g~~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~--l~~---~g~~lvi~P~~aL~~q~~~~l~~~--g 89 (523)
T 1oyw_A 21 FGYQQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPA--LLL---NGLTVVVSPLISLMKDQVDQLQAN--G 89 (523)
T ss_dssp TCCSSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHH--HHS---SSEEEEECSCHHHHHHHHHHHHHT--T
T ss_pred hCCCCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHH--HHh---CCCEEEECChHHHHHHHHHHHHHc--C
Confidence 3446899999999999875 7899999999999998654322 222 36799999965 668899999987 4
Q ss_pred ceEEEEeCChhHHH--HHHHhcCCCCCCCCCCEEEecHHHHHHH-HHHhhhhcCccEEEEcCcccccChh-------hHH
Q 004347 264 VSAIIYHGSKKERD--EIRRKHMPRAIGPKFPIVVTSYEVALSD-ARKYLRHYNWKYLVVDEGHRLKNPK-------CKL 333 (759)
Q Consensus 264 ~~~~~~~g~~~~r~--~~~~~~~~~~~~~~~~vvIttye~l~~~-~~~~l~~~~~~~lIvDEaH~ikn~~-------s~~ 333 (759)
..+..+++...... ...... ..+.++|+++|++.+... ....+...++.+|||||||++.... ..+
T Consensus 90 i~~~~l~~~~~~~~~~~~~~~~----~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l 165 (523)
T 1oyw_A 90 VAAACLNSTQTREQQLEVMTGC----RTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAAL 165 (523)
T ss_dssp CCEEEECTTSCHHHHHHHHHHH----HHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGG
T ss_pred CcEEEEeCCCCHHHHHHHHHHH----hcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHH
Confidence 56666666543221 111110 114678999999998533 2244556789999999999986532 122
Q ss_pred HHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 004347 334 LKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAIL 413 (759)
Q Consensus 334 ~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il 413 (759)
......++...+++|||||......++...+.+-.|..+..
T Consensus 166 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--------------------------------------- 206 (523)
T 1oyw_A 166 GQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--------------------------------------- 206 (523)
T ss_dssp GGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC---------------------------------------
T ss_pred HHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC---------------------------------------
Confidence 23334556778999999996554455544443322211000
Q ss_pred hhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhh
Q 004347 414 RPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLL 493 (759)
Q Consensus 414 ~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~ 493 (759)
. ...|.. .+.+. ..
T Consensus 207 -~-----------~~r~~l-~~~v~-~~---------------------------------------------------- 220 (523)
T 1oyw_A 207 -S-----------FDRPNI-RYMLM-EK---------------------------------------------------- 220 (523)
T ss_dssp -C-----------CCCTTE-EEEEE-EC----------------------------------------------------
T ss_pred -C-----------CCCCce-EEEEE-eC----------------------------------------------------
Confidence 0 001111 11111 00
Q ss_pred hhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHH
Q 004347 494 ESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQI 573 (759)
Q Consensus 494 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i 573 (759)
..++..|.+++... .+.++||||+.....+.+...|...|+.+..+||+++..+|..++
T Consensus 221 -------------------~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 221 -------------------FKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp -------------------SSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 11333344444432 578999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEE
Q 004347 574 QDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHV 635 (759)
Q Consensus 574 ~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 635 (759)
+.|.+++ +. +|++|.++|+|||+++++.||+||+|+|+..|.|++||++|.|+...+.+
T Consensus 280 ~~f~~g~--~~-vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 280 EKFQRDD--LQ-IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp HHHHTTS--CS-EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred HHHHcCC--Ce-EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 9999854 33 59999999999999999999999999999999999999999998765544
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=6.4e-29 Score=276.45 Aligned_cols=317 Identities=16% Similarity=0.167 Sum_probs=219.1
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC-Cc
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-SV 264 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-~~ 264 (759)
+.+|+|||.+++..++. +.++|+..+||+|||+..+..+..+. ...+++|||+|+. +..||.+++.+|.+ ++
T Consensus 19 ~~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 44789999999998874 77999999999999996665554444 3346899999975 66899999999986 67
Q ss_pred eEEEEeCChhHH---HHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccCh------------
Q 004347 265 SAIIYHGSKKER---DEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNP------------ 329 (759)
Q Consensus 265 ~~~~~~g~~~~r---~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~------------ 329 (759)
.+..++|..... ..+... ..+.++|+|+|++.+...+. .+...++++|||||||++...
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l-----~~~~~~Iiv~Tp~~l~~~l~-~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~ 166 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSF-----EEDDYHILVFSTQFVSKNRE-KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 166 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHH-----HHTCCSEEEEEHHHHHHCHH-HHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTT
T ss_pred eEEEEECCCChhhHHHHHHHh-----hcCCCCEEEECHHHHHHHHH-HhccccccEEEEeChHhhhhccchhhhHHhhcC
Confidence 888888876441 111111 11347999999999987653 456668999999999987421
Q ss_pred -hhH-HHHHHhcC------------CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHH
Q 004347 330 -KCK-LLKELKYI------------PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKE 395 (759)
Q Consensus 330 -~s~-~~~~l~~l------------~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~ 395 (759)
... +...+..+ .....+++||||.+......+ +...+......
T Consensus 167 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------~~~~~~~~~~~------- 223 (414)
T 3oiy_A 167 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVGR------- 223 (414)
T ss_dssp CCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH----------------HHHHHSCCSSC-------
T ss_pred CcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH----------------HHHhhccCcCc-------
Confidence 112 22233322 455679999997665433211 00110000000
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhH
Q 004347 396 ELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGK 475 (759)
Q Consensus 396 ~~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~ 475 (759)
....++.....+. .
T Consensus 224 ------------------------------~~~~~~~i~~~~~-~----------------------------------- 237 (414)
T 3oiy_A 224 ------------------------------LVSVARNITHVRI-S----------------------------------- 237 (414)
T ss_dssp ------------------------------CCCCCCSEEEEEE-S-----------------------------------
T ss_pred ------------------------------cccccccchheee-c-----------------------------------
Confidence 0001111111111 0
Q ss_pred HHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCc
Q 004347 476 LNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGY 555 (759)
Q Consensus 476 l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~ 555 (759)
..|...|..++.. .+.++||||+....++.+...|...|+
T Consensus 238 -------------------------------------~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~ 277 (414)
T 3oiy_A 238 -------------------------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKF 277 (414)
T ss_dssp -------------------------------------SCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred -------------------------------------cCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 1133444555554 258999999999999999999999999
Q ss_pred eEE-EEeCCCCHHHHHHHHHHhhccCCCceEEEEe----cccccCCCCCCC-CCEEEEeCCC--CCcchhhHHhhhhhhc
Q 004347 556 EVC-RIDGSVRLDERKRQIQDFNDVNSSYRIFLLS----TRAGGLGINLTA-ADTCILYDSD--WNPQMDLQAMDRCHRI 627 (759)
Q Consensus 556 ~~~-~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls----T~agg~GINL~~-a~~VI~~D~~--wnp~~~~Qa~gR~~Ri 627 (759)
++. .+||. +|. ++.|+++ .++| |++ |+++++|||+++ +++||+||+| +++..|.|++||++|.
T Consensus 278 ~~~~~~h~~----~r~--~~~f~~g--~~~v-Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 278 NVGETWSEF----EKN--FEDFKVG--KINI-LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp CEEESSSCH----HHH--HHHHHTT--SCSE-EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCE
T ss_pred ceehhhcCc----chH--HHHHhCC--CCeE-EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccC
Confidence 998 88884 444 9999974 4455 666 999999999999 9999999999 9999999999999999
Q ss_pred CCC--CceEEEEEeeCCCHHHHHHHHHHHHHH
Q 004347 628 GQT--KPVHVYRLATAQSVEGRILKRAFSKLK 657 (759)
Q Consensus 628 GQ~--k~V~Vyrli~~~TvEe~i~~~~~~K~~ 657 (759)
|+. +.-.++.|+ -|...+........
T Consensus 349 g~~~~~~g~~i~~~----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 349 LNGVLVKGVSVIFE----EDEEIFESLKTRLL 376 (414)
T ss_dssp ETTEECCEEEEEEC----CCHHHHHHHHHHHH
T ss_pred CCCCCcceEEEEEE----ccHHHHHHHHHHhc
Confidence 986 566777777 24455555555444
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=7.3e-29 Score=286.33 Aligned_cols=315 Identities=15% Similarity=0.120 Sum_probs=214.2
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCC
Q 004347 185 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPS 263 (759)
Q Consensus 185 ~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~ 263 (759)
+....++|+|.+++..++. +.++|+..+||+|||+..+..+ +.. .+.+|||+|+. ++.+|.+.+.++ +
T Consensus 40 fg~~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpa--l~~---~g~~lVisP~~~L~~q~~~~l~~~--g 108 (591)
T 2v1x_A 40 FKLEKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPA--LCS---DGFTLVICPLISLMEDQLMVLKQL--G 108 (591)
T ss_dssp SCCCSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHH--HTS---SSEEEEECSCHHHHHHHHHHHHHH--T
T ss_pred hCCCCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHH--HHc---CCcEEEEeCHHHHHHHHHHHHHhc--C
Confidence 3446899999999999876 7889999999999998654332 222 36899999964 678899999998 5
Q ss_pred ceEEEEeCChhHHH--HHHHhcCCCCCCCCCCEEEecHHHHHH--H----HHHhhhhcCccEEEEcCcccccChh-----
Q 004347 264 VSAIIYHGSKKERD--EIRRKHMPRAIGPKFPIVVTSYEVALS--D----ARKYLRHYNWKYLVVDEGHRLKNPK----- 330 (759)
Q Consensus 264 ~~~~~~~g~~~~r~--~~~~~~~~~~~~~~~~vvIttye~l~~--~----~~~~l~~~~~~~lIvDEaH~ikn~~----- 330 (759)
+.+..++|+..... ...... ......++|+++|++.+.. . +...+...++.+|||||||++....
T Consensus 109 i~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~ 186 (591)
T 2v1x_A 109 ISATMLNASSSKEHVKWVHAEM--VNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRP 186 (591)
T ss_dssp CCEEECCSSCCHHHHHHHHHHH--HCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCG
T ss_pred CcEEEEeCCCCHHHHHHHHHHh--hcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHH
Confidence 66666666543221 111111 0123578999999998742 1 2222334478999999999986432
Q ss_pred --hHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHH
Q 004347 331 --CKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAK 408 (759)
Q Consensus 331 --s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (759)
..+......++...+++|||||-.....++...+.+-.+..+..
T Consensus 187 ~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~---------------------------------- 232 (591)
T 2v1x_A 187 DYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA---------------------------------- 232 (591)
T ss_dssp GGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC----------------------------------
T ss_pred HHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec----------------------------------
Confidence 12223334556778999999995433333333332211100000
Q ss_pred HHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcC
Q 004347 409 LHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCN 488 (759)
Q Consensus 409 L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~ 488 (759)
....|. ..+.+.......
T Consensus 233 -----------------~~~r~n-l~~~v~~~~~~~-------------------------------------------- 250 (591)
T 2v1x_A 233 -----------------SFNRPN-LYYEVRQKPSNT-------------------------------------------- 250 (591)
T ss_dssp -----------------CCCCTT-EEEEEEECCSSH--------------------------------------------
T ss_pred -----------------CCCCcc-cEEEEEeCCCcH--------------------------------------------
Confidence 000111 111111100000
Q ss_pred ChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHH
Q 004347 489 HPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDE 568 (759)
Q Consensus 489 hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~ 568 (759)
..++..|.+++... ..+.++||||......+.+...|...|+.+..+||+++..+
T Consensus 251 ------------------------~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~ 305 (591)
T 2v1x_A 251 ------------------------EDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPED 305 (591)
T ss_dssp ------------------------HHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred ------------------------HHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHH
Confidence 00112222222211 15789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 569 RKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 569 R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
|..+++.|..+... +|++|.++|+|||+++++.||+||+|+++..|.|++||++|.|+...+.+|
T Consensus 306 R~~~~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 306 KTTVHRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp HHHHHHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHHHHHHHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 99999999974433 599999999999999999999999999999999999999999986655544
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=2e-28 Score=284.23 Aligned_cols=337 Identities=15% Similarity=0.174 Sum_probs=215.0
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHH-HHHHHHhCC----CCCCeEEEECCc-cHHHHHHHHHHh
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIA-FLAHLKGNG----LHGPYLVIAPLS-TLSNWVNEISRF 260 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~-li~~l~~~~----~~~~~LIV~P~s-ll~~W~~E~~~~ 260 (759)
...|+|||.+++..++. ..+.++|+..+||+|||++.+. ++..+.... ...++|||||+. +..||.+++.++
T Consensus 41 ~~~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~ 118 (579)
T 3sqw_A 41 FPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 118 (579)
T ss_dssp CSSCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHH
Confidence 34799999999988872 2367889999999999998554 444444432 234799999975 568899999886
Q ss_pred C------CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccChh--
Q 004347 261 V------PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKNPK-- 330 (759)
Q Consensus 261 ~------p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn~~-- 330 (759)
+ +...+....|.......+.... ...++|+|+|++.+...+.. ......+++|||||||++....
T Consensus 119 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-----~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~ 193 (579)
T 3sqw_A 119 HDMNYGLKKYACVSLVGGTDFRAAMNKMN-----KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFR 193 (579)
T ss_dssp HHHCGGGTTSCEEEECTTSCHHHHHHHHH-----HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTH
T ss_pred HhhcccccceEEEEEECCccHHHHHHHHh-----cCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCH
Confidence 4 3455655555544333322211 12578999999999876533 2223457899999999987542
Q ss_pred hH---HHHHHhcCC-----CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHH
Q 004347 331 CK---LLKELKYIP-----IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRR 402 (759)
Q Consensus 331 s~---~~~~l~~l~-----~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~ 402 (759)
.. +...+.... ....+++|||+-. ...++. ..+.... .
T Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~~---~~~l~~~--------------~---------------- 239 (579)
T 3sqw_A 194 DDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKLA---NNIMNKK--------------E---------------- 239 (579)
T ss_dssp HHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHHT---TTTCCSS--------------E----------------
T ss_pred HHHHHHHHHhhhhhcccccCceEEEEeccCCh-HHHHHH---HHHcCCC--------------c----------------
Confidence 22 222222222 4468999999742 112111 1100000 0
Q ss_pred HHHHHHHHHHhhhHHhhhhhhHHhhhCCCce-EEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHH
Q 004347 403 GQMVAKLHAILRPFLLRRMKSDVEQMLPRKK-EIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMV 481 (759)
Q Consensus 403 ~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~-e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 481 (759)
...+...... ........ ...+.+.-...
T Consensus 240 ------------~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~------------------------------------- 269 (579)
T 3sqw_A 240 ------------CLFLDTVDKN-EPEAHERIDQSVVISEKFAN------------------------------------- 269 (579)
T ss_dssp ------------EEEEESSCSS-SCSSCTTEEEEEEEESSTTH-------------------------------------
T ss_pred ------------eEEEeecCcc-ccccccccceEEEEecchhh-------------------------------------
Confidence 0000000000 00011111 11121111000
Q ss_pred HHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHh--hCCCcEEEEccchhHHHHHHHHHHhc---Cce
Q 004347 482 QLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLF--ARNHKVLVFSQWTKILDIMEYYFNEK---GYE 556 (759)
Q Consensus 482 ~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~--~~~~kvLIFsq~~~~ld~L~~~L~~~---g~~ 556 (759)
.+...+..++..+. ..+.++||||+....++.+...|... |+.
T Consensus 270 --------------------------------~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~ 317 (579)
T 3sqw_A 270 --------------------------------SIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP 317 (579)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSC
T ss_pred --------------------------------hHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCc
Confidence 01111111111111 35789999999999999999999887 999
Q ss_pred EEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 557 VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 557 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
+..+||+++..+|..++++|.++ .+. +|++|+++++|||++++++||+||+|+++..|.|++||++|.|+... ++
T Consensus 318 v~~~hg~~~~~~R~~~~~~F~~g--~~~-vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~--~i 392 (579)
T 3sqw_A 318 ILEFHGKITQNKRTSLVKRFKKD--ESG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS--SV 392 (579)
T ss_dssp EEEESTTSCHHHHHHHHHHHHHC--SSE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE--EE
T ss_pred EEEecCCCCHHHHHHHHHHhhcC--CCe-EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCce--EE
Confidence 99999999999999999999974 344 59999999999999999999999999999999999999999997544 44
Q ss_pred EEeeCCCHHHHHHHHHH
Q 004347 637 RLATAQSVEGRILKRAF 653 (759)
Q Consensus 637 rli~~~TvEe~i~~~~~ 653 (759)
.|++.. |...+..+.
T Consensus 393 ~~~~~~--e~~~~~~l~ 407 (579)
T 3sqw_A 393 LFICKD--ELPFVRELE 407 (579)
T ss_dssp EEEEGG--GHHHHHHHH
T ss_pred EEEccc--HHHHHHHHH
Confidence 455553 444444443
No 32
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.96 E-value=5.4e-28 Score=279.87 Aligned_cols=337 Identities=15% Similarity=0.181 Sum_probs=213.4
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHH-HHHHHHhCC----CCCCeEEEECCc-cHHHHHHHHHHh
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIA-FLAHLKGNG----LHGPYLVIAPLS-TLSNWVNEISRF 260 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~-li~~l~~~~----~~~~~LIV~P~s-ll~~W~~E~~~~ 260 (759)
...|+|||.+++..++. ..+.+.|++.+||+|||++.+. ++..+.... ...++|||+|+. +..||.+++.++
T Consensus 92 ~~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~ 169 (563)
T 3i5x_A 92 FPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 169 (563)
T ss_dssp CSSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHH
Confidence 34799999999988872 2367889999999999998554 444444432 124799999975 567899999886
Q ss_pred C------CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh--hhhcCccEEEEcCcccccChh--
Q 004347 261 V------PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY--LRHYNWKYLVVDEGHRLKNPK-- 330 (759)
Q Consensus 261 ~------p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~--l~~~~~~~lIvDEaH~ikn~~-- 330 (759)
+ +...+..+.|.......+.... ...++|+|+|++.+...+... .....+++|||||||++....
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~ 244 (563)
T 3i5x_A 170 HDMNYGLKKYACVSLVGGTDFRAAMNKMN-----KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFR 244 (563)
T ss_dssp HHHCGGGTTSCEEEECTTSCHHHHHHHHH-----HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTH
T ss_pred HhhccccCceeEEEEECCcCHHHHHHHHh-----cCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchH
Confidence 3 2344555555544333222211 125789999999987765332 223357899999999986532
Q ss_pred hH---HHHHHhcC-----CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHH
Q 004347 331 CK---LLKELKYI-----PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRR 402 (759)
Q Consensus 331 s~---~~~~l~~l-----~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~ 402 (759)
.. +...+... .....+++||||-. ...++.. .+.... .
T Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~~~---~~~~~~--------------~---------------- 290 (563)
T 3i5x_A 245 DDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKLAN---NIMNKK--------------E---------------- 290 (563)
T ss_dssp HHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHHTT---TTCCSS--------------E----------------
T ss_pred HHHHHHHHhhhhccccCccCceEEEEEccCCH-HHHHHHH---HhcCCC--------------c----------------
Confidence 22 22222222 24468999999832 1222111 110000 0
Q ss_pred HHHHHHHHHHhhhHHhhhhhhHHhhhCCCc-eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHH
Q 004347 403 GQMVAKLHAILRPFLLRRMKSDVEQMLPRK-KEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMV 481 (759)
Q Consensus 403 ~~~~~~L~~il~p~~lRR~k~dv~~~LP~k-~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 481 (759)
...+.... ......... ....+.+..... .
T Consensus 291 ------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~---------------------------------- 321 (563)
T 3i5x_A 291 ------------CLFLDTVD-KNEPEAHERIDQSVVISEKFAN--S---------------------------------- 321 (563)
T ss_dssp ------------EEEEESSC-SSSCSSCTTEEEEEEEESSTTH--H----------------------------------
T ss_pred ------------eEEEeccC-CCCccccccCceEEEECchhHh--h----------------------------------
Confidence 00000000 000001111 111121111000 0
Q ss_pred HHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHh--hCCCcEEEEccchhHHHHHHHHHHhc---Cce
Q 004347 482 QLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLF--ARNHKVLVFSQWTKILDIMEYYFNEK---GYE 556 (759)
Q Consensus 482 ~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~--~~~~kvLIFsq~~~~ld~L~~~L~~~---g~~ 556 (759)
....+..+...+. ..+.++||||+....++.+..+|... |+.
T Consensus 322 ---------------------------------~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~ 368 (563)
T 3i5x_A 322 ---------------------------------IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP 368 (563)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred ---------------------------------HHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCce
Confidence 0001111111111 35789999999999999999999886 999
Q ss_pred EEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEE
Q 004347 557 VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 557 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
+..+||+++..+|..+++.|.++ .+. +|++|+++++|||++++++||+||+|+++..|.|++||++|.|+.. .++
T Consensus 369 v~~~h~~~~~~~R~~~~~~f~~g--~~~-vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g--~~i 443 (563)
T 3i5x_A 369 ILEFHGKITQNKRTSLVKRFKKD--ESG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEG--SSV 443 (563)
T ss_dssp EEEESTTSCHHHHHHHHHHHHHC--SSE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCE--EEE
T ss_pred EEEecCCCCHHHHHHHHHHHhcC--CCC-EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCc--eEE
Confidence 99999999999999999999974 333 5999999999999999999999999999999999999999999654 444
Q ss_pred EEeeCCCHHHHHHHHHH
Q 004347 637 RLATAQSVEGRILKRAF 653 (759)
Q Consensus 637 rli~~~TvEe~i~~~~~ 653 (759)
.|++.. |...+..+.
T Consensus 444 ~~~~~~--e~~~~~~l~ 458 (563)
T 3i5x_A 444 LFICKD--ELPFVRELE 458 (563)
T ss_dssp EEEEGG--GHHHHHHHH
T ss_pred EEEchh--HHHHHHHHH
Confidence 555554 344444443
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.95 E-value=4.9e-29 Score=284.44 Aligned_cols=313 Identities=16% Similarity=0.180 Sum_probs=188.2
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHH-hCCCCCCeEEEECCc-cHHHHHHHHHHhCCCceE
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVSA 266 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~-~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~~ 266 (759)
.|+|||.+++..++.. .+.++|+..+||+|||++++..+.... ..+..+++|||||.. ++.||.+++.++++...+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 6899999999888741 247899999999999999665554444 344456899999977 678999999999765433
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccC---hhhHHHHHHhcCC-
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN---PKCKLLKELKYIP- 341 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn---~~s~~~~~l~~l~- 341 (759)
.+..+...... ......++|+|+|++.+...+.. .+....+++|||||||++.. ........+..++
T Consensus 219 ~~~~~~~~~~~--------~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~ 290 (508)
T 3fho_A 219 KTAFGIKDSVP--------KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPR 290 (508)
T ss_dssp CEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCT
T ss_pred eEEEEeCCccc--------ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCc
Confidence 33322221111 01123679999999998776532 23345689999999999864 2233334444454
Q ss_pred CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Q 004347 342 IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRM 421 (759)
Q Consensus 342 ~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~ 421 (759)
....++|||||- +...++.. ++... +..+.-.
T Consensus 291 ~~~~i~lSAT~~-~~~~~~~~------------------~~~~~-----------------------------~~~i~~~ 322 (508)
T 3fho_A 291 NTQIVLFSATFS-ERVEKYAE------------------RFAPN-----------------------------ANEIRLK 322 (508)
T ss_dssp TCEEEEEESCCS-THHHHHHH------------------HHSTT-----------------------------CEEECCC
T ss_pred CCeEEEEeCCCC-HHHHHHHH------------------HhcCC-----------------------------CeEEEec
Confidence 345699999983 22222111 11000 0000000
Q ss_pred hhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCC
Q 004347 422 KSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSC 501 (759)
Q Consensus 422 k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~ 501 (759)
.... ..+......+.+...
T Consensus 323 ~~~~--~~~~~~~~~~~~~~~----------------------------------------------------------- 341 (508)
T 3fho_A 323 TEEL--SVEGIKQLYMDCQSE----------------------------------------------------------- 341 (508)
T ss_dssp CCC------CCCCEEEEC--C-----------------------------------------------------------
T ss_pred cccC--CcccceEEEEECCch-----------------------------------------------------------
Confidence 0000 000111111111110
Q ss_pred CCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCC
Q 004347 502 FYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNS 581 (759)
Q Consensus 502 ~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 581 (759)
..|...+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++..
T Consensus 342 -----------~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~ 408 (508)
T 3fho_A 342 -----------EHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTS 408 (508)
T ss_dssp -----------HHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSC
T ss_pred -----------HHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCC
Confidence 11333344444332 46799999999999999999999999999999999999999999999997544
Q ss_pred CceEEEEecccccCCCCCCCCCEEEEeCCC------CCcchhhHHhhhhhhcCCCCceEEE
Q 004347 582 SYRIFLLSTRAGGLGINLTAADTCILYDSD------WNPQMDLQAMDRCHRIGQTKPVHVY 636 (759)
Q Consensus 582 ~~~v~LlsT~agg~GINL~~a~~VI~~D~~------wnp~~~~Qa~gR~~RiGQ~k~V~Vy 636 (759)
. +|++|.++++|||++++++||+||+| +++..+.|++||++|.|+...+.+|
T Consensus 409 ~---VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 409 K---VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp C---CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred e---EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 4 59999999999999999999999999 7899999999999999966555443
No 34
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.95 E-value=5.7e-29 Score=282.25 Aligned_cols=318 Identities=18% Similarity=0.265 Sum_probs=108.5
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHH-HHHHHHhCCCCCCeEEEECCccH-HHHHHHHHH---h
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIA-FLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISR---F 260 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~-li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~---~ 260 (759)
....|+|+|..++..++. ..+.+.|++.+||+|||++.+. ++..+...+...++|||+|...+ .||.+.+.+ +
T Consensus 111 g~~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 188 (479)
T 3fmp_B 111 GFNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF 188 (479)
T ss_dssp TCCSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhh
Confidence 345899999999999875 2347889999999999998544 44444333344479999997754 667555544 4
Q ss_pred CCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccC---hhhHHHH
Q 004347 261 VPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKN---PKCKLLK 335 (759)
Q Consensus 261 ~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn---~~s~~~~ 335 (759)
.+.+.+.+..+..... .......+|+|+|++.+...+.. ++...++++|||||||++.. .......
T Consensus 189 ~~~~~~~~~~~~~~~~---------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 259 (479)
T 3fmp_B 189 YPELKLAYAVRGNKLE---------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 259 (479)
T ss_dssp STTCCEEEESTTCCCC---------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHH
T ss_pred CCCceEEEEeCCcccc---------ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHH
Confidence 5667776666644211 11223568999999999776522 34345689999999999853 2223333
Q ss_pred HHhcCC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 004347 336 ELKYIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILR 414 (759)
Q Consensus 336 ~l~~l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~ 414 (759)
.+..+. ....+++||||-. +++.+...
T Consensus 260 i~~~~~~~~~~i~~SAT~~~----~~~~~~~~------------------------------------------------ 287 (479)
T 3fmp_B 260 IQRMLPRNCQMLLFSATFED----SVWKFAQK------------------------------------------------ 287 (479)
T ss_dssp HHTTSCTTSEEEEEESCCCH----HHHHHHHH------------------------------------------------
T ss_pred HHhhCCccceEEEEeCCCCH----HHHHHHHH------------------------------------------------
Confidence 344443 3467999999832 11111110
Q ss_pred hHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhh
Q 004347 415 PFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLE 494 (759)
Q Consensus 415 p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~ 494 (759)
.+|......+ .- ..... ..+ . +....|+
T Consensus 288 -------------~~~~~~~i~~--~~--~~~~~-~~~-~---------------------------~~~~~~~------ 315 (479)
T 3fmp_B 288 -------------VVPDPNVIKL--KR--EEETL-DTI-K---------------------------QYYVLCS------ 315 (479)
T ss_dssp -------------HSSSEEEEEE--C------------------------------------------------------
T ss_pred -------------HcCCCeEEec--cc--cccCc-CCc-e---------------------------EEEEEeC------
Confidence 1222111111 00 00000 000 0 0000000
Q ss_pred hhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHH
Q 004347 495 SAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQ 574 (759)
Q Consensus 495 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 574 (759)
....|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++
T Consensus 316 ----------------~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~ 377 (479)
T 3fmp_B 316 ----------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 377 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------CHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHH
Confidence 0012334444444432 3568999999999999999999999999999999999999999999
Q ss_pred HhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCc------chhhHHhhhhhhcCCCCceEEEEEeeC
Q 004347 575 DFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNP------QMDLQAMDRCHRIGQTKPVHVYRLATA 641 (759)
Q Consensus 575 ~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~wnp------~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 641 (759)
.|+++... +|++|+++++|||++++++||+||+||++ ..|.||+||++|.|+...+. .|+..
T Consensus 378 ~f~~g~~~---iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i--~~~~~ 445 (479)
T 3fmp_B 378 RFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV--NMVDS 445 (479)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHcCCCc---EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEE--EEEcC
Confidence 99974433 59999999999999999999999999876 68999999999999655443 34443
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=1.9e-27 Score=293.11 Aligned_cols=309 Identities=17% Similarity=0.170 Sum_probs=216.2
Q ss_pred CCccchhHHHHHHHHHHHhhcCC--CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGL--NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPS 263 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~--~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~ 263 (759)
+..++|||.+++..++..+.++. ++|++++||+|||++++..+......+ .++||+||+. +..||.+++.++++.
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g--~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH--KQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT--CEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC--CeEEEEechHHHHHHHHHHHHHHhhc
Confidence 45789999999999998776666 899999999999999875555444443 5899999987 567899999988764
Q ss_pred --ceEEEEeCChh--HHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhc
Q 004347 264 --VSAIIYHGSKK--ERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKY 339 (759)
Q Consensus 264 --~~~~~~~g~~~--~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~ 339 (759)
..+..++|... .+....... ..+..+|+|+|++.+.. .+...++++|||||+|++... ....++.
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~l----~~g~~dIvV~T~~ll~~----~~~~~~l~lvIiDEaH~~g~~---~~~~l~~ 747 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAEV----AEGKIDILIGTHKLLQS----DVKFKDLGLLIVDEEHRFGVR---HKERIKA 747 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHH----HTTCCSEEEECTHHHHS----CCCCSSEEEEEEESGGGSCHH---HHHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHH----hcCCCCEEEECHHHHhC----CccccccceEEEechHhcChH---HHHHHHH
Confidence 46677776432 222221111 12468999999987643 234457899999999997543 3334444
Q ss_pred CC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHh
Q 004347 340 IP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 418 (759)
Q Consensus 340 l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~l 418 (759)
++ ..+.++|||||.++.+.....-+. .+.
T Consensus 748 l~~~~~vl~lSATp~p~~l~~~~~~~~--~~~------------------------------------------------ 777 (1151)
T 2eyq_A 748 MRANVDILTLTATPIPRTLNMAMSGMR--DLS------------------------------------------------ 777 (1151)
T ss_dssp HHTTSEEEEEESSCCCHHHHHHHTTTS--EEE------------------------------------------------
T ss_pred hcCCCCEEEEcCCCChhhHHHHHhcCC--Cce------------------------------------------------
Confidence 43 457899999997654332211100 000
Q ss_pred hhhhhHHhhhCCCce--EEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhh
Q 004347 419 RRMKSDVEQMLPRKK--EIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESA 496 (759)
Q Consensus 419 RR~k~dv~~~LP~k~--e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 496 (759)
.+ ..-|... ..........
T Consensus 778 -----~i-~~~~~~r~~i~~~~~~~~~----------------------------------------------------- 798 (1151)
T 2eyq_A 778 -----II-ATPPARRLAVKTFVREYDS----------------------------------------------------- 798 (1151)
T ss_dssp -----EC-CCCCCBCBCEEEEEEECCH-----------------------------------------------------
T ss_pred -----EE-ecCCCCccccEEEEecCCH-----------------------------------------------------
Confidence 00 0011110 0111111111
Q ss_pred ccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc--CceEEEEeCCCCHHHHHHHHH
Q 004347 497 FSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK--GYEVCRIDGSVRLDERKRQIQ 574 (759)
Q Consensus 497 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~ 574 (759)
......++..+ .+|.+++|||+....++.+...|... ++.+..+||.++..+|.++++
T Consensus 799 -------------------~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~ 858 (1151)
T 2eyq_A 799 -------------------MVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 858 (1151)
T ss_dssp -------------------HHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHH
Confidence 11111222222 36889999999999999999999887 889999999999999999999
Q ss_pred HhhccCCCceEEEEecccccCCCCCCCCCEEEEeCC-CCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 575 DFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDS-DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 575 ~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~-~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
+|+++..+ +|++|.++++|||++++++||++++ +|++..+.|++||++|.|+. -++|.++..+
T Consensus 859 ~F~~g~~~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~--g~~~ll~~~~ 922 (1151)
T 2eyq_A 859 DFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ--AYAWLLTPHP 922 (1151)
T ss_dssp HHHTTSCC---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC--EEEEEEECCG
T ss_pred HHHcCCCc---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCc--eEEEEEECCc
Confidence 99974433 5999999999999999999999999 69999999999999999965 4455566543
No 36
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.6e-26 Score=279.00 Aligned_cols=353 Identities=13% Similarity=0.135 Sum_probs=219.8
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHhCCCce
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVPSVS 265 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~ 265 (759)
+..|+|||.+++..+.. +.++|++.+||+|||+++...+......+ +++||++|. .+..||.++|.++++ .
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~g--~rvL~l~PtkaLa~Q~~~~l~~~~~--~ 155 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKNK--QRVIYTSPIKALSNQKYRELLAEFG--D 155 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHHS--C
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhccC--CeEEEECChHHHHHHHHHHHHHHhC--C
Confidence 44799999999999875 78899999999999999765555544443 689999997 566889999999886 5
Q ss_pred EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh--hhHHHHHHhcCC-
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP--KCKLLKELKYIP- 341 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~--~s~~~~~l~~l~- 341 (759)
+.+++|.... ....+|+|+|++++.+.+.. .....++++|||||+|++.+. .......+..++
T Consensus 156 vglltGd~~~-------------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 156 VGLMTGDITI-------------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp EEEECSSCEE-------------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred EEEEeCCCcc-------------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 6677775432 13568999999998765432 122346799999999999765 233334445554
Q ss_pred CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Q 004347 342 IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRM 421 (759)
Q Consensus 342 ~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~ 421 (759)
..+.|+||||+- | .. +|..|+...... |..+.
T Consensus 223 ~~~il~LSATi~-n-~~------------------e~a~~l~~~~~~--------------------------~~~vi-- 254 (1010)
T 2xgj_A 223 KVRYVFLSATIP-N-AM------------------EFAEWICKIHSQ--------------------------PCHIV-- 254 (1010)
T ss_dssp TCEEEEEECCCT-T-HH------------------HHHHHHHHHHTS--------------------------CEEEE--
T ss_pred CCeEEEEcCCCC-C-HH------------------HHHHHHHhhcCC--------------------------CeEEE--
Confidence 456799999952 2 22 344443210000 00000
Q ss_pred hhHHhhhCCCceEEEEEe-c-------CCH---HHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCh
Q 004347 422 KSDVEQMLPRKKEIILYA-T-------MTE---HQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHP 490 (759)
Q Consensus 422 k~dv~~~LP~k~e~~v~~-~-------ls~---~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp 490 (759)
....-|......++. . ... ....-|....... ... .+.. .. .....-+ .+
T Consensus 255 ---~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~---~~~~-~~---~~~~~g~----~~ 315 (1010)
T 2xgj_A 255 ---YTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI-----SNQ---IGDD-PN---STDSRGK----KG 315 (1010)
T ss_dssp ---EECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTC-----C----------------------------
T ss_pred ---ecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHH-----hhh---hccc-cc---ccccccc----cc
Confidence 000111111111111 0 000 0000111110000 000 0000 00 0000000 00
Q ss_pred hhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhh-CCCcEEEEccchhHHHHHHHHHHhcCce-------------
Q 004347 491 DLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFA-RNHKVLVFSQWTKILDIMEYYFNEKGYE------------- 556 (759)
Q Consensus 491 ~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~-~~~kvLIFsq~~~~ld~L~~~L~~~g~~------------- 556 (759)
...... . ... .....+..++..+.. .+.++||||.+...++.+...|...|+.
T Consensus 316 ~~~k~~----------~--~~~-~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 316 QTYKGG----------S--AKG-DAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred cccccc----------c--ccc-cchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 000000 0 000 001123333333333 3458999999999999998888764432
Q ss_pred --------------------------EEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE---
Q 004347 557 --------------------------VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL--- 607 (759)
Q Consensus 557 --------------------------~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~--- 607 (759)
+..+||+++..+|..+++.|+++ .++ +|++|.++++|||++++++||+
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G--~ik-VLVAT~~la~GIDiP~~~vVI~~~~ 459 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG--FLK-VLFATETFSIGLNMPAKTVVFTSVR 459 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTT--CCS-EEEEEGGGGGSTTCCBSEEEESCSE
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcC--CCc-EEEEehHhhccCCCCCceEEEeCCc
Confidence 78899999999999999999974 444 5999999999999999999999
Q ss_pred -eCC----CCCcchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 608 -YDS----DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 608 -~D~----~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
||. ||+|..|.|++||++|.|+....++|.+++.+.
T Consensus 460 kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 460 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp EECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred ccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 999 999999999999999999988899999998764
No 37
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.6e-26 Score=281.38 Aligned_cols=356 Identities=13% Similarity=0.130 Sum_probs=217.6
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCCce
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVS 265 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~ 265 (759)
...|+|||.+++..+. ++.++|++.+||+|||+++...+...... .+++||++|.. +..||.+++.+++. .
T Consensus 182 ~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~~--~ 253 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG--D 253 (1108)
T ss_dssp SSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHTS--S
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEcCcHHHHHHHHHHHHHHhC--C
Confidence 3479999999999874 48899999999999999976666555544 35899999976 56789999999986 5
Q ss_pred EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh-hhhcCccEEEEcCcccccChh--hHHHHHHhcCC-
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY-LRHYNWKYLVVDEGHRLKNPK--CKLLKELKYIP- 341 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~-l~~~~~~~lIvDEaH~ikn~~--s~~~~~l~~l~- 341 (759)
+.+++|... ..+..+|+|+|++.+.+.+... ....++++|||||||++.... ..+...+..++
T Consensus 254 VglltGd~~-------------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~ 320 (1108)
T 3l9o_A 254 VGLMTGDIT-------------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 320 (1108)
T ss_dssp EEEECSSCB-------------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCT
T ss_pred ccEEeCccc-------------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCC
Confidence 566776543 2246899999999988765321 112357899999999997642 23334444554
Q ss_pred CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Q 004347 342 IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRM 421 (759)
Q Consensus 342 ~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~ 421 (759)
..+.++||||+ .|. .++..++..+.... . .++.
T Consensus 321 ~~qvl~lSATi-pn~-~e~a~~l~~~~~~~------------------~-------------------------~vi~-- 353 (1108)
T 3l9o_A 321 KVRYVFLSATI-PNA-MEFAEWICKIHSQP------------------C-------------------------HIVY-- 353 (1108)
T ss_dssp TSEEEEEECSC-SSC-HHHHHHHHHHTCSC------------------E-------------------------EEEE--
T ss_pred CceEEEEcCCC-CCH-HHHHHHHHhhcCCC------------------e-------------------------EEEe--
Confidence 45679999993 333 22222221111000 0 0000
Q ss_pred hhHHhhhCCCceEEEEE----------e-cCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCh
Q 004347 422 KSDVEQMLPRKKEIILY----------A-TMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHP 490 (759)
Q Consensus 422 k~dv~~~LP~k~e~~v~----------~-~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp 490 (759)
...-|......++ + .........|........................ ++..
T Consensus 354 ----~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~--- 416 (1108)
T 3l9o_A 354 ----TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKK----------GQTY--- 416 (1108)
T ss_dssp ----ECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------------------------
T ss_pred ----cCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccccccc----------cccc---
Confidence 0001111111111 1 1111111111111110000000000000000000 0000
Q ss_pred hhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhh-CCCcEEEEccchhHHHHHHHHHHhcCce-------------
Q 004347 491 DLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFA-RNHKVLVFSQWTKILDIMEYYFNEKGYE------------- 556 (759)
Q Consensus 491 ~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~-~~~kvLIFsq~~~~ld~L~~~L~~~g~~------------- 556 (759)
... .........+..++..+.. .+.++||||......+.+...|...|+.
T Consensus 417 ---~~~-------------~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 480 (1108)
T 3l9o_A 417 ---KGG-------------SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 480 (1108)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGG
T ss_pred ---ccc-------------cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 000 0000012233344444433 3569999999999999888887654333
Q ss_pred --------------------------EEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCC
Q 004347 557 --------------------------VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDS 610 (759)
Q Consensus 557 --------------------------~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~ 610 (759)
+..+||++++.+|..+++.|.++... +|++|.++++|||++++++||+|+.
T Consensus 481 ~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~~ 557 (1108)
T 3l9o_A 481 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVR 557 (1108)
T ss_dssp GSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCSE
T ss_pred HHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecCc
Confidence 78999999999999999999974444 5999999999999999999999999
Q ss_pred CCCcch--------hhHHhhhhhhcCCCCceEEEEEeeCCCHHH
Q 004347 611 DWNPQM--------DLQAMDRCHRIGQTKPVHVYRLATAQSVEG 646 (759)
Q Consensus 611 ~wnp~~--------~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe 646 (759)
+|++.. |.|++||++|.|+....++|.++..+..+.
T Consensus 558 ~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~ 601 (1108)
T 3l9o_A 558 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQ 601 (1108)
T ss_dssp EESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHH
T ss_pred ccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHH
Confidence 887765 999999999999999999999998875433
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.94 E-value=2.5e-27 Score=279.40 Aligned_cols=313 Identities=15% Similarity=0.188 Sum_probs=206.8
Q ss_pred ccchhHHHHHHHHHHHhhcC--CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC--C
Q 004347 189 KLKSYQLKGVKWLISLWQNG--LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP--S 263 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~--~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~ 263 (759)
.|+|+|.+++..++..+..+ .+.|+..+||+|||++++..+......| ..++|++|+. +..||.+++.++++ +
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g--~qvlvlaPtr~La~Q~~~~l~~~~~~~g 445 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG--FQTAFMVPTSILAIQHYRRTVESFSKFN 445 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT--SCEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCcHHHHHHHHHHHHHHhhhcC
Confidence 79999999999998765544 4889999999999999876665554443 5899999986 55789999999976 5
Q ss_pred ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHh-cCCC
Q 004347 264 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELK-YIPI 342 (759)
Q Consensus 264 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~-~l~~ 342 (759)
+.+..++|+.......... .....+..+|+|+|++.+.. .+...++++|||||+|++.... ...+. ....
T Consensus 446 i~v~~l~G~~~~~~r~~~~--~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~~~ 516 (780)
T 1gm5_A 446 IHVALLIGATTPSEKEKIK--SGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQ---REALMNKGKM 516 (780)
T ss_dssp CCEEECCSSSCHHHHHHHH--HHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC--------CCCCSSSSC
T ss_pred ceEEEEeCCCCHHHHHHHH--HHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHH---HHHHHHhCCC
Confidence 7788888875433211100 00112468999999987743 2344577999999999974221 11111 1235
Q ss_pred CcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhhh
Q 004347 343 GNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMK 422 (759)
Q Consensus 343 ~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k 422 (759)
.+.+++||||.+..+...+ +-.. .
T Consensus 517 ~~vL~mSATp~p~tl~~~~----~g~~-------------~--------------------------------------- 540 (780)
T 1gm5_A 517 VDTLVMSATPIPRSMALAF----YGDL-------------D--------------------------------------- 540 (780)
T ss_dssp CCEEEEESSCCCHHHHHHH----TCCS-------------S---------------------------------------
T ss_pred CCEEEEeCCCCHHHHHHHH----hCCc-------------c---------------------------------------
Confidence 6789999999754322111 0000 0
Q ss_pred hHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCC
Q 004347 423 SDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCF 502 (759)
Q Consensus 423 ~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~ 502 (759)
..+...+|+....+......
T Consensus 541 ~s~i~~~p~~r~~i~~~~~~------------------------------------------------------------ 560 (780)
T 1gm5_A 541 VTVIDEMPPGRKEVQTMLVP------------------------------------------------------------ 560 (780)
T ss_dssp CEEECCCCSSCCCCEECCCC------------------------------------------------------------
T ss_pred eeeeeccCCCCcceEEEEec------------------------------------------------------------
Confidence 00001123221100000000
Q ss_pred CCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchh--------HHHHHHHHHHh---cCceEEEEeCCCCHHHHHH
Q 004347 503 YPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTK--------ILDIMEYYFNE---KGYEVCRIDGSVRLDERKR 571 (759)
Q Consensus 503 ~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~--------~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~ 571 (759)
..+...+...+......+++++|||+... .+..+...|.. .|+.+..+||+++..+|..
T Consensus 561 ----------~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~ 630 (780)
T 1gm5_A 561 ----------MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDR 630 (780)
T ss_dssp ----------SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHH
T ss_pred ----------cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHH
Confidence 00112222333444456889999998653 45667777776 4788999999999999999
Q ss_pred HHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCCCC-CcchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 572 QIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDW-NPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 572 ~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
++++|+++... +|++|.++++|||++++++||+||+++ +...+.|++||++|.|+...|. .++...+
T Consensus 631 v~~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~i--ll~~~~~ 698 (780)
T 1gm5_A 631 VMLEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCF--LVVGDVG 698 (780)
T ss_dssp HHHHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEE--CCCCSCC
T ss_pred HHHHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEE--EEECCCC
Confidence 99999975444 599999999999999999999999985 7888899999999999765543 3444433
No 39
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.93 E-value=7.5e-25 Score=259.79 Aligned_cols=323 Identities=19% Similarity=0.133 Sum_probs=213.8
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC-Cce
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-SVS 265 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-~~~ 265 (759)
..|+|+|.+++..+. .+.++|++.+||+|||+++...+...... .+++++++|.. +..+|.+++.++.+ +..
T Consensus 24 ~~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 24 EELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp -CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 479999999999854 38899999999999999985444433333 36899999977 67889999976654 567
Q ss_pred EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh-hcCccEEEEcCcccccC--hhhHHHHHHhcC--
Q 004347 266 AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR-HYNWKYLVVDEGHRLKN--PKCKLLKELKYI-- 340 (759)
Q Consensus 266 ~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~-~~~~~~lIvDEaH~ikn--~~s~~~~~l~~l-- 340 (759)
+..++|...... ......+|+|+|++.+......... ..++++|||||+|.+.+ ....+...+..+
T Consensus 98 v~~~~G~~~~~~---------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~ 168 (702)
T 2p6r_A 98 IGISTGDYESRD---------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR 168 (702)
T ss_dssp EEEECSSCBCCS---------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcch---------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh
Confidence 888888653211 1124789999999998766533111 22568999999999875 222222222222
Q ss_pred --CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHh
Q 004347 341 --PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLL 418 (759)
Q Consensus 341 --~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~l 418 (759)
+..+.++||||+- +..++ ..|+..+.-..
T Consensus 169 ~~~~~~ii~lSATl~--n~~~~------------------~~~l~~~~~~~----------------------------- 199 (702)
T 2p6r_A 169 MNKALRVIGLSATAP--NVTEI------------------AEWLDADYYVS----------------------------- 199 (702)
T ss_dssp HCTTCEEEEEECCCT--THHHH------------------HHHTTCEEEEC-----------------------------
T ss_pred cCcCceEEEECCCcC--CHHHH------------------HHHhCCCcccC-----------------------------
Confidence 3567799999973 23333 33332100000
Q ss_pred hhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhcc
Q 004347 419 RRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFS 498 (759)
Q Consensus 419 RR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 498 (759)
..-|-..+..++.... + ....... . ..
T Consensus 200 --------~~r~~~l~~~~~~~~~-----~----------------~~~~~~~-~----------------------~~- 226 (702)
T 2p6r_A 200 --------DWRPVPLVEGVLCEGT-----L----------------ELFDGAF-S----------------------TS- 226 (702)
T ss_dssp --------CCCSSCEEEEEECSSE-----E----------------EEEETTE-E----------------------EE-
T ss_pred --------CCCCccceEEEeeCCe-----e----------------eccCcch-h----------------------hh-
Confidence 0011111111110000 0 0000000 0 00
Q ss_pred CCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc-------------------------
Q 004347 499 DSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK------------------------- 553 (759)
Q Consensus 499 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~------------------------- 553 (759)
....+... +......++++||||+.....+.+...|...
T Consensus 227 ------------~~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 290 (702)
T 2p6r_A 227 ------------RRVKFEEL----VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRK 290 (702)
T ss_dssp ------------EECCHHHH----HHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHH
T ss_pred ------------hhhhHHHH----HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHH
Confidence 00001222 2222346889999999999888777776542
Q ss_pred -----CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE----eC---CCCCcchhhHHh
Q 004347 554 -----GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL----YD---SDWNPQMDLQAM 621 (759)
Q Consensus 554 -----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~----~D---~~wnp~~~~Qa~ 621 (759)
++.+..+||+++.++|..+.+.|.++ .++ +|++|.+++.|||++++++||. || .|+++..+.|++
T Consensus 291 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g--~~~-vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~ 367 (702)
T 2p6r_A 291 LAECVRKGAAFHHAGLLNGQRRVVEDAFRRG--NIK-VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMA 367 (702)
T ss_dssp HHHHHHTTCCEECTTSCHHHHHHHHHHHHTT--SCC-EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHH
T ss_pred HHHHHhcCeEEecCCCCHHHHHHHHHHHHCC--CCe-EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHh
Confidence 23467799999999999999999974 444 5999999999999999999998 87 689999999999
Q ss_pred hhhhhcCCCCceEEEEEeeCCCHHH
Q 004347 622 DRCHRIGQTKPVHVYRLATAQSVEG 646 (759)
Q Consensus 622 gR~~RiGQ~k~V~Vyrli~~~TvEe 646 (759)
||++|.|+.++-.+|.+++....+.
T Consensus 368 GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 368 GRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp TTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred hhcCCCCCCCCceEEEEecCccHHH
Confidence 9999999999999999998876543
No 40
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.93 E-value=1.3e-24 Score=258.34 Aligned_cols=327 Identities=18% Similarity=0.148 Sum_probs=211.6
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHH-HHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC-Cc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAF-LAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-SV 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~l-i~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-~~ 264 (759)
..|+|+|.+++..++ ..+.+.|++.+||+|||+++... +..+... .++++|++|.. +..+|.+++.++.+ +.
T Consensus 29 ~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~ 103 (715)
T 2va8_A 29 KKLNPPQTEAVKKGL---LEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGF 103 (715)
T ss_dssp CBCCHHHHHHHHTTT---TTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTC
T ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCC
Confidence 489999999998733 34889999999999999998544 4444434 36899999987 67889999966643 56
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh-hcCccEEEEcCcccccC--hhhHHHHHHhcCC
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR-HYNWKYLVVDEGHRLKN--PKCKLLKELKYIP 341 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~-~~~~~~lIvDEaH~ikn--~~s~~~~~l~~l~ 341 (759)
.+..++|....... .....+|+|+|++.+......... ..++++|||||+|.+.+ ....+...+..++
T Consensus 104 ~v~~~~G~~~~~~~---------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~ 174 (715)
T 2va8_A 104 KVAMTSGDYDTDDA---------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK 174 (715)
T ss_dssp CEEECCSCSSSCCG---------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCchh---------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc
Confidence 77777775432110 113679999999998776543111 23568999999999874 2223334444555
Q ss_pred CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Q 004347 342 IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRM 421 (759)
Q Consensus 342 ~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~ 421 (759)
..+.++|||||- |..+ |..|+.......
T Consensus 175 ~~~ii~lSATl~--n~~~------------------~~~~l~~~~~~~-------------------------------- 202 (715)
T 2va8_A 175 RRNLLALSATIS--NYKQ------------------IAKWLGAEPVAT-------------------------------- 202 (715)
T ss_dssp TSEEEEEESCCT--THHH------------------HHHHHTCEEEEC--------------------------------
T ss_pred cCcEEEEcCCCC--CHHH------------------HHHHhCCCccCC--------------------------------
Confidence 778899999983 2333 333332100000
Q ss_pred hhHHhhhCCCceEEEE-EecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCC
Q 004347 422 KSDVEQMLPRKKEIIL-YATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDS 500 (759)
Q Consensus 422 k~dv~~~LP~k~e~~v-~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~ 500 (759)
..-|-.....+ +..... .+..+ .+.+.
T Consensus 203 -----~~r~~~l~~~~~~~~~~~---------------------------------------------~~~~~--~~~~~ 230 (715)
T 2va8_A 203 -----NWRPVPLIEGVIYPERKK---------------------------------------------KEYNV--IFKDN 230 (715)
T ss_dssp -----CCCSSCEEEEEEEECSST---------------------------------------------TEEEE--EETTS
T ss_pred -----CCCCCCceEEEEecCCcc---------------------------------------------cceee--ecCcc
Confidence 00011111111 000000 00000 00000
Q ss_pred CCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcC--------------------------
Q 004347 501 CFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKG-------------------------- 554 (759)
Q Consensus 501 ~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g-------------------------- 554 (759)
. .... .....+ ..++......++++|||++.....+.+...|....
T Consensus 231 ~-~~~~---~~~~~~----~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (715)
T 2va8_A 231 T-TKKV---HGDDAI----IAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302 (715)
T ss_dssp C-EEEE---ESSSHH----HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHH
T ss_pred h-hhhc---ccchHH----HHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccc
Confidence 0 0000 000011 22223333468899999999998888887776531
Q ss_pred ----------ceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE----eC-------CCCC
Q 004347 555 ----------YEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL----YD-------SDWN 613 (759)
Q Consensus 555 ----------~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~----~D-------~~wn 613 (759)
..+..+||+++..+|..+.+.|.++ .++ +|++|.+++.|||++++++||. || .|++
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g--~~~-vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s 379 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQR--KIK-VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT--CSC-EEEECGGGGGSSCCCBSEEEECCC--------------C
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcC--CCe-EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCC
Confidence 2488899999999999999999974 444 5999999999999999999998 99 8999
Q ss_pred cchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 614 PQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 614 p~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
+..+.|++||++|.|+..+-.+|+|++...
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999999999999999999988765
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.93 E-value=5.4e-25 Score=261.78 Aligned_cols=322 Identities=18% Similarity=0.140 Sum_probs=216.9
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHhCC-Cc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVP-SV 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p-~~ 264 (759)
..|+|+|.+++..++ ..+.++|++.+||+|||+++ ++++..+... .++++|++|. .+..+|.+++.++.+ +.
T Consensus 22 ~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~ 96 (720)
T 2zj8_A 22 ESFYPPQAEALKSGI---LEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGL 96 (720)
T ss_dssp CBCCHHHHHHHTTTG---GGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTC
T ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCC
Confidence 479999999998632 34889999999999999998 5555555533 3689999996 567889999976654 57
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhh-hcCccEEEEcCcccccC--hhhHHHHHHhcCC
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLR-HYNWKYLVVDEGHRLKN--PKCKLLKELKYIP 341 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~-~~~~~~lIvDEaH~ikn--~~s~~~~~l~~l~ 341 (759)
.+..++|...... ......+|+|+|++.+......... ..++++|||||+|++.. ....+...+..++
T Consensus 97 ~v~~~~G~~~~~~---------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~ 167 (720)
T 2zj8_A 97 RVAMATGDYDSKD---------EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML 167 (720)
T ss_dssp CEEEECSCSSCCC---------GGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB
T ss_pred EEEEecCCCCccc---------cccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh
Confidence 8888888543211 1123679999999998766543211 23568999999999874 2233333344443
Q ss_pred -CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhh
Q 004347 342 -IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRR 420 (759)
Q Consensus 342 -~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR 420 (759)
..+.++||||+- +..+ |..|+......
T Consensus 168 ~~~~ii~lSATl~--n~~~------------------~~~~l~~~~~~-------------------------------- 195 (720)
T 2zj8_A 168 GKAQIIGLSATIG--NPEE------------------LAEWLNAELIV-------------------------------- 195 (720)
T ss_dssp TTBEEEEEECCCS--CHHH------------------HHHHTTEEEEE--------------------------------
T ss_pred cCCeEEEEcCCcC--CHHH------------------HHHHhCCcccC--------------------------------
Confidence 567799999973 2333 33343211000
Q ss_pred hhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCC
Q 004347 421 MKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDS 500 (759)
Q Consensus 421 ~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~ 500 (759)
...-|-.....++.... + ....+.. +
T Consensus 196 -----~~~rp~~l~~~~~~~~~---------~------------~~~~~~~------------------~---------- 221 (720)
T 2zj8_A 196 -----SDWRPVKLRRGVFYQGF---------V------------TWEDGSI------------------D---------- 221 (720)
T ss_dssp -----CCCCSSEEEEEEEETTE---------E------------EETTSCE------------------E----------
T ss_pred -----CCCCCCcceEEEEeCCe---------e------------eccccch------------------h----------
Confidence 00011111111111000 0 0000000 0
Q ss_pred CCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc---------------------------
Q 004347 501 CFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK--------------------------- 553 (759)
Q Consensus 501 ~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~--------------------------- 553 (759)
....+...+.+ ....++++||||+.....+.+...|...
T Consensus 222 ----------~~~~~~~~~~~----~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 287 (720)
T 2zj8_A 222 ----------RFSSWEELVYD----AIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNE 287 (720)
T ss_dssp ----------ECSSTTHHHHH----HHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHH
T ss_pred ----------hhhHHHHHHHH----HHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchH
Confidence 00112222222 2346789999999999888777776542
Q ss_pred ------CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE----eC----CCCCcchhhH
Q 004347 554 ------GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL----YD----SDWNPQMDLQ 619 (759)
Q Consensus 554 ------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~----~D----~~wnp~~~~Q 619 (759)
...+..+||+++..+|..+.+.|.++ .++ +|++|.+++.|||++++++||. || .|+++..+.|
T Consensus 288 ~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g--~~~-vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Q 364 (720)
T 2zj8_A 288 KLAKAIRGGVAFHHAGLGRDERVLVEENFRKG--IIK-AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQ 364 (720)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT--SSC-EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHH
T ss_pred HHHHHHhcCeeeecCCCCHHHHHHHHHHHHCC--CCe-EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHH
Confidence 12488999999999999999999974 444 5999999999999999999998 88 6899999999
Q ss_pred HhhhhhhcCCCCceEEEEEeeCCCHHH
Q 004347 620 AMDRCHRIGQTKPVHVYRLATAQSVEG 646 (759)
Q Consensus 620 a~gR~~RiGQ~k~V~Vyrli~~~TvEe 646 (759)
++||++|.|+.++-.+|.+++....+.
T Consensus 365 r~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 365 MLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHhhcCCCCCCCCceEEEEecCccHHH
Confidence 999999999999999999999887553
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.93 E-value=1.4e-24 Score=263.76 Aligned_cols=385 Identities=16% Similarity=0.118 Sum_probs=225.9
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCCc
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSV 264 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~ 264 (759)
.+..|+|+|.+++..+.. +.++|++.+||+|||+.++..+..+... .+++||++|.. +..||.+++.+++++.
T Consensus 36 ~~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~~--g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHRN--MTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp CSSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 345799999999988764 7889999999999999766555555443 35799999965 6688999999998888
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh--hhHHHHHHhcCC
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP--KCKLLKELKYIP 341 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~--~s~~~~~l~~l~ 341 (759)
.+..++|.... ....+|+|+|++.+.+.+.. .....++++|||||||++.+. .......+..++
T Consensus 110 ~v~~l~G~~~~-------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 110 NIGLITGDVQI-------------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp CEEEECSSCEE-------------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred eEEEEeCCCcc-------------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 88888886531 24678999999999776532 222346799999999998753 333444555564
Q ss_pred -CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhh
Q 004347 342 -IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRR 420 (759)
Q Consensus 342 -~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR 420 (759)
..+.++|||||- +.. +|..|+........ +++.
T Consensus 177 ~~v~iIlLSAT~~--n~~------------------ef~~~l~~~~~~~~-------------------------~vi~- 210 (997)
T 4a4z_A 177 QHVKFILLSATVP--NTY------------------EFANWIGRTKQKNI-------------------------YVIS- 210 (997)
T ss_dssp TTCEEEEEECCCT--THH------------------HHHHHHHHHHTCCE-------------------------EEEE-
T ss_pred cCCCEEEEcCCCC--ChH------------------HHHHHHhcccCCce-------------------------EEEe-
Confidence 456799999973 222 34444321000000 0000
Q ss_pred hhhHHhhhCCCceEEEEEe---------cCCHHHHHHHHHHHHH---HHHHHHH-----Hhhh-----hc----CCcch-
Q 004347 421 MKSDVEQMLPRKKEIILYA---------TMTEHQRNFQDHLINK---TLENHLR-----EKVF-----SA----GRGMK- 473 (759)
Q Consensus 421 ~k~dv~~~LP~k~e~~v~~---------~ls~~q~~~y~~l~~~---~~~~~~~-----~~~~-----~~----~~~~~- 473 (759)
....|...++.++. .........|...... ....... .... .. ..+..
T Consensus 211 -----~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~ 285 (997)
T 4a4z_A 211 -----TPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRG 285 (997)
T ss_dssp -----CSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------------------------------
T ss_pred -----cCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence 00011111111110 0000000011100000 0000000 0000 00 00000
Q ss_pred -hHHHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHh
Q 004347 474 -GKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNE 552 (759)
Q Consensus 474 -~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~ 552 (759)
..-...-..-+..+..+..... .....+. .......++..+.+.+... ...++||||......+.+..+|..
T Consensus 286 ~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~li~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~ 358 (997)
T 4a4z_A 286 GRGNSTRGGANRGGSRGAGAIGS--NKRKFFT---QDGPSKKTWPEIVNYLRKR--ELLPMVVFVFSKKRCEEYADWLEG 358 (997)
T ss_dssp ------------------------------------CCCCTTHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHTTTT
T ss_pred ccccccccccccccccccccccc--ccccccc---ccccchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHhc
Confidence 0000000000000000000000 0000000 0000123455555555542 457999999999999999988876
Q ss_pred cCc---------------------------------------eEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccc
Q 004347 553 KGY---------------------------------------EVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAG 593 (759)
Q Consensus 553 ~g~---------------------------------------~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ag 593 (759)
.|+ .+..+||+++..+|..+++.|..+. ++ +|++|.++
T Consensus 359 ~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~--~k-VLvAT~~~ 435 (997)
T 4a4z_A 359 INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF--IK-VLFATETF 435 (997)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC--CS-EEEECTHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCC--Cc-EEEEchHh
Confidence 555 4789999999999999999999854 33 59999999
Q ss_pred cCCCCCCCCCEEEEeCCCC---------CcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHH
Q 004347 594 GLGINLTAADTCILYDSDW---------NPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKR 651 (759)
Q Consensus 594 g~GINL~~a~~VI~~D~~w---------np~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~ 651 (759)
++|||+++ .+||+++.++ ++..|.|++||++|.|+....++|.++..+..+...+..
T Consensus 436 a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~ 501 (997)
T 4a4z_A 436 AMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKE 501 (997)
T ss_dssp HHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHH
T ss_pred hCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHH
Confidence 99999999 7777766655 999999999999999999999999998766666665543
No 43
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.92 E-value=1.7e-23 Score=252.97 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=110.2
Q ss_pred ccchhHHHHHHHHHHHhhc----------CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC-CccHHHHHHHH
Q 004347 189 KLKSYQLKGVKWLISLWQN----------GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP-LSTLSNWVNEI 257 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~----------~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P-~sll~~W~~E~ 257 (759)
.|||||..++++++..+.. +.+|++.+.||+|||++++.++..+...+...++||||| ..+..||..+|
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f 350 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEY 350 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHH
Confidence 5999999999999875432 468999999999999999877755544444568999999 55779999999
Q ss_pred HHhCCCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh--h-hhcCccEEEEcCcccccChhhHHH
Q 004347 258 SRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY--L-RHYNWKYLVVDEGHRLKNPKCKLL 334 (759)
Q Consensus 258 ~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~--l-~~~~~~~lIvDEaH~ikn~~s~~~ 334 (759)
.+|.+.. +..+.... .+.... .....+|+|+|++.+...+... + ....+.+||+|||||+... ...
T Consensus 351 ~~f~~~~---v~~~~s~~--~l~~~L----~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--~~~ 419 (1038)
T 2w00_A 351 QRFSPDS---VNGSENTA--GLKRNL----DKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--EAQ 419 (1038)
T ss_dssp HTTSTTC---SSSSCCCH--HHHHHH----HCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--HHH
T ss_pred HHhcccc---cccccCHH--HHHHHh----cCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--HHH
Confidence 9998652 12222111 111111 0135789999999998765321 1 1236799999999997632 223
Q ss_pred HH-HhcCCCCcEEEEecCCCCC
Q 004347 335 KE-LKYIPIGNKLLLTGTPLQN 355 (759)
Q Consensus 335 ~~-l~~l~~~~rllLTgTPl~n 355 (759)
+. ...++...+++|||||...
T Consensus 420 ~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 420 KNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHHCSSEEEEEEESSCCCS
T ss_pred HHHHHhCCcccEEEEeCCcccc
Confidence 33 3567778899999999854
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.91 E-value=4.3e-23 Score=252.85 Aligned_cols=318 Identities=17% Similarity=0.193 Sum_probs=217.0
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhC-CCc
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFV-PSV 264 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~-p~~ 264 (759)
+.+|+|+|..++..++. +.+.|+..+||+|||+..+..+..... ....+|||+|+. +..|+.+.+.++. .++
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~~--~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i 149 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR--KGKKSALVFPTVTLVKQTLERLQKLADEKV 149 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHHT--TTCCEEEEESSHHHHHHHHHHHHTTSCTTS
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHHh--cCCeEEEEechHHHHHHHHHHHHHhhCCCC
Confidence 45799999999998875 789999999999999976666555553 346899999977 5578999999975 356
Q ss_pred eEEEEeCChhH---HHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChh-----------
Q 004347 265 SAIIYHGSKKE---RDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPK----------- 330 (759)
Q Consensus 265 ~~~~~~g~~~~---r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~----------- 330 (759)
.+..++|.... ...+.... .+.++|+|+|++.+.+.+. .+...++++|||||||++....
T Consensus 150 ~v~~l~Gg~~~~er~~~~~~l~-----~g~~~IlV~Tp~rL~~~l~-~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEKSFE-----EDDYHILVFSTQFVSKNRE-KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHHHHH-----TSCCSEEEEEHHHHHHSHH-HHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred eEEEEeCCCCHHHHHHHHHHHh-----CCCCCEEEECHHHHHHHHH-hhcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 88888886543 22222111 1358999999999977653 4556688999999999865321
Q ss_pred --hH-HHHHHhcC------------CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHH
Q 004347 331 --CK-LLKELKYI------------PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKE 395 (759)
Q Consensus 331 --s~-~~~~l~~l------------~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~ 395 (759)
.. +...+..+ .....+++||||.+..+...+ +..........
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------~~~~l~i~v~~------- 280 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVGR------- 280 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH----------------HHHHTCCCCCB-------
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH----------------hhcceeEEecc-------
Confidence 11 22333322 345679999998665533211 01100000000
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhH
Q 004347 396 ELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGK 475 (759)
Q Consensus 396 ~~~~~~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~ 475 (759)
.....+......+.+
T Consensus 281 -----------------------------~~~~~~~i~~~~~~~------------------------------------ 295 (1104)
T 4ddu_A 281 -----------------------------LVSVARNITHVRISS------------------------------------ 295 (1104)
T ss_dssp -----------------------------CCCCCCCEEEEEESC------------------------------------
T ss_pred -----------------------------CCCCcCCceeEEEec------------------------------------
Confidence 000011111111111
Q ss_pred HHHHHHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCc
Q 004347 476 LNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGY 555 (759)
Q Consensus 476 l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~ 555 (759)
.|...|.+++.. .+.++||||+....++.+..+|...|+
T Consensus 296 --------------------------------------~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~ 334 (1104)
T 4ddu_A 296 --------------------------------------RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKF 334 (1104)
T ss_dssp --------------------------------------CCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTC
T ss_pred --------------------------------------CHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCC
Confidence 133344445554 258999999999999999999999999
Q ss_pred eEE-EEeCCCCHHHHHHHHHHhhccCCCceEEEEe----cccccCCCCCCC-CCEEEEeCCCC-----------------
Q 004347 556 EVC-RIDGSVRLDERKRQIQDFNDVNSSYRIFLLS----TRAGGLGINLTA-ADTCILYDSDW----------------- 612 (759)
Q Consensus 556 ~~~-~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls----T~agg~GINL~~-a~~VI~~D~~w----------------- 612 (759)
++. .+|| +|.+ +++|+++. +.| |++ |+++++|||+++ +++||+||+|-
T Consensus 335 ~~~~~lhg-----~rr~-l~~F~~G~--~~V-LVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~ 405 (1104)
T 4ddu_A 335 NVGETWSE-----FEKN-FEDFKVGK--INI-LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLAR 405 (1104)
T ss_dssp CEEESSSS-----HHHH-HHHHHHTS--CSE-EEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHH
T ss_pred CeeeEecC-----cHHH-HHHHHCCC--CCE-EEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHH
Confidence 998 9998 3566 99999844 444 777 999999999999 99999999998
Q ss_pred -------------------------------------------------------CcchhhHHhhhhhhcCC---CCceE
Q 004347 613 -------------------------------------------------------NPQMDLQAMDRCHRIGQ---TKPVH 634 (759)
Q Consensus 613 -------------------------------------------------------np~~~~Qa~gR~~RiGQ---~k~V~ 634 (759)
++..|+||.||++|.|. ++-+.
T Consensus 406 l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Gls 485 (1104)
T 4ddu_A 406 VLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVS 485 (1104)
T ss_dssp HHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceE
Confidence 66789999999999875 34433
Q ss_pred EEEEeeCCCHHHHHHHHHHHHHHHH
Q 004347 635 VYRLATAQSVEGRILKRAFSKLKLE 659 (759)
Q Consensus 635 Vyrli~~~TvEe~i~~~~~~K~~l~ 659 (759)
|. ++ =|+.++..+.++.+..
T Consensus 486 i~-~~----~d~~~~~~l~~~~~~~ 505 (1104)
T 4ddu_A 486 VI-FE----EDEEIFESLKTRLLLI 505 (1104)
T ss_dssp EE-EC----CCHHHHHHHHHHHHHH
T ss_pred EE-EE----ecHHHHHHHHHHHhhh
Confidence 32 22 2667888777777654
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.88 E-value=2.4e-22 Score=246.39 Aligned_cols=318 Identities=14% Similarity=0.157 Sum_probs=203.5
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-HHHHHHHHHHhCCC--c
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRFVPS--V 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~--~ 264 (759)
..+ |+|..++..++. |.+.|+..+||+|||+.++.++..+... ..++|||+|+.. ..|+.+.+.++++. +
T Consensus 56 ~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 56 EPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp SCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 348 999999998875 7899999999999998666666666554 368999999774 57788889888653 3
Q ss_pred ----eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC
Q 004347 265 ----SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI 340 (759)
Q Consensus 265 ----~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l 340 (759)
.+..++|............ .... ++|+|+|++.+...+.. |. .+++|||||||++.+....+...+..+
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~---~l~~-~~IlV~TP~~L~~~l~~-L~--~l~~lViDEah~~l~~~~~~~~i~~~l 201 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQ---NLRN-FKIVITTTQFLSKHYRE-LG--HFDFIFVDDVDAILKASKNVDKLLHLL 201 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHH---SGGG-CSEEEEEHHHHHHCSTT-SC--CCSEEEESCHHHHHTSTHHHHHHHHHT
T ss_pred CccceEEEEeCCCChhhHHHHHh---hccC-CCEEEEcHHHHHHHHHH-hc--cCCEEEEeChhhhhhccccHHHHHHHh
Confidence 6677777554322111110 1112 79999999998765422 33 678999999999887544444444433
Q ss_pred ------------CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHH
Q 004347 341 ------------PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAK 408 (759)
Q Consensus 341 ------------~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (759)
.....+++|||+-.. .++.. .|...+
T Consensus 202 gf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~~--------------~~~~~~-------------------------- 239 (1054)
T 1gku_B 202 GFHYDLKTKSWVGEARGCLMVSTATAK--KGKKA--------------ELFRQL-------------------------- 239 (1054)
T ss_dssp TEEEETTTTEEEECCSSEEEECCCCSC--CCTTH--------------HHHHHH--------------------------
T ss_pred CcchhhhhhhcccCCceEEEEecCCCc--hhHHH--------------HHhhcc--------------------------
Confidence 123458889887543 11100 000000
Q ss_pred HHHHhhhHHhhhhhhHHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcC
Q 004347 409 LHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCN 488 (759)
Q Consensus 409 L~~il~p~~lRR~k~dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~ 488 (759)
..+. .. . ....++.... .++.
T Consensus 240 -------~~i~-v~-~-~~~~~~~i~~-~~~~------------------------------------------------ 260 (1054)
T 1gku_B 240 -------LNFD-IG-S-SRITVRNVED-VAVN------------------------------------------------ 260 (1054)
T ss_dssp -------HCCC-CS-C-CEECCCCEEE-EEES------------------------------------------------
T ss_pred -------eEEE-cc-C-cccCcCCceE-EEec------------------------------------------------
Confidence 0000 00 0 0000111111 1110
Q ss_pred ChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHH
Q 004347 489 HPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDE 568 (759)
Q Consensus 489 hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~ 568 (759)
..|...|..++.. .+.++||||+....++.+..+|... +++..+||++.
T Consensus 261 ------------------------~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~--- 309 (1054)
T 1gku_B 261 ------------------------DESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK--- 309 (1054)
T ss_dssp ------------------------CCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS---
T ss_pred ------------------------hhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH---
Confidence 1122233333332 2678999999999999999999988 99999999874
Q ss_pred HHHHHHHhhccCCCceEEEEe----cccccCCCCCCCC-CEEEEeCCC--------------------------------
Q 004347 569 RKRQIQDFNDVNSSYRIFLLS----TRAGGLGINLTAA-DTCILYDSD-------------------------------- 611 (759)
Q Consensus 569 R~~~i~~F~~~~~~~~v~Lls----T~agg~GINL~~a-~~VI~~D~~-------------------------------- 611 (759)
+++++|+++ .++| |++ |+++++|||++++ ++||+||.|
T Consensus 310 --~~l~~F~~G--~~~V-LVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1054)
T 1gku_B 310 --GDYEKFVEG--EIDH-LIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIER 384 (1054)
T ss_dssp --HHHHHHHHT--SCSE-EEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHT
T ss_pred --HHHHHHHcC--CCcE-EEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHH
Confidence 788999974 4445 666 9999999999995 999999999
Q ss_pred ---------------------------------------CCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHH
Q 004347 612 ---------------------------------------WNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRA 652 (759)
Q Consensus 612 ---------------------------------------wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~ 652 (759)
.++..|.||+||++|.|....-..+-++..+ |..++..+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~~~l 462 (1054)
T 1gku_B 385 LLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED--DSELLSAF 462 (1054)
T ss_dssp TCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec--CHHHHHHH
Confidence 7899999999999998876432233333333 45566666
Q ss_pred HHHHHH
Q 004347 653 FSKLKL 658 (759)
Q Consensus 653 ~~K~~l 658 (759)
.++.+.
T Consensus 463 ~~~l~~ 468 (1054)
T 1gku_B 463 IERAKL 468 (1054)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 655544
No 46
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.86 E-value=3.1e-21 Score=215.13 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=84.5
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCE----
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADT---- 604 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~---- 604 (759)
.+.++||||+.....+.+...|...|+++..+||. +|.++++.|.++... +|++|.++++|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 36689999999999999999999999999999997 578899999985444 599999999999999 555
Q ss_pred -------------EEEeCCCCCcchhhHHhhhhhhcCCCCc
Q 004347 605 -------------CILYDSDWNPQMDLQAMDRCHRIGQTKP 632 (759)
Q Consensus 605 -------------VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 632 (759)
||+|+.|.++..+.|++||++|.|....
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~ 282 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLG 282 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCC
Confidence 5778999999999999999999996543
No 47
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.85 E-value=4.9e-20 Score=213.45 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=100.6
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
..|+..|.+.+......+.++||||.+....+.|...|...|+++..+||.++..+|..+...|+. +. ++|+|+.
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIATdm 489 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIATNM 489 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeCCc
Confidence 458999999888776778899999999999999999999999999999999887777645455543 33 6999999
Q ss_pred ccCCCCCC--------CCCEEEEeCCCCCcchhhHHhhhhhhcCCCCc
Q 004347 593 GGLGINLT--------AADTCILYDSDWNPQMDLQAMDRCHRIGQTKP 632 (759)
Q Consensus 593 gg~GINL~--------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 632 (759)
+|+|+|+. +..+||+||.|-++..|.|++||++|.|..-.
T Consensus 490 AgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 490 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred cccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 99999999 78899999999999999999999999996543
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.84 E-value=2.2e-21 Score=226.09 Aligned_cols=122 Identities=15% Similarity=0.162 Sum_probs=95.0
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE-
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL- 607 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~- 607 (759)
.+.++||||+.....+.+...|...|+++..+||. +|.++++.|.++... +|++|+++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEEC
Confidence 57899999999999999999999999999999993 799999999975434 599999999999999 999997
Q ss_pred -------------------eCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeC-CCHHHHHHHHHHHHHHHH
Q 004347 608 -------------------YDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA-QSVEGRILKRAFSKLKLE 659 (759)
Q Consensus 608 -------------------~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~-~TvEe~i~~~~~~K~~l~ 659 (759)
||.|.++..|.|++||++|.|.... .+|.|+.. ..-|...+.....+..+.
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G-~ai~l~~~~~~~d~~~l~~ie~~~~l~ 551 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIG-DEYHYGGGTSEDDTMLAHWTEAKILLD 551 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCC-EEEEECSCCCCCCTTBHHHHHHHHHHH
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCC-EEEEEEecCChhHHHHHHHHHHHHhhh
Confidence 6788899999999999999943332 23444321 223334444444444443
No 49
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.84 E-value=7.5e-21 Score=213.32 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=85.0
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEe
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILY 608 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~ 608 (759)
.+.++||||+.....+.+...|...|+.+..+||.+. +++++.|+++... +|++|+++++|||++. ++||+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 3668999999999999999999999999999999754 5789999975444 5999999999999999 999999
Q ss_pred C--------------------CCCCcchhhHHhhhhhhcCCCC
Q 004347 609 D--------------------SDWNPQMDLQAMDRCHRIGQTK 631 (759)
Q Consensus 609 D--------------------~~wnp~~~~Qa~gR~~RiGQ~k 631 (759)
| .|.++..|.||+||++|.|...
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8 8999999999999999999733
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.84 E-value=5.1e-21 Score=215.11 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=88.1
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE-
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL- 607 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~- 607 (759)
.+.++||||+....++.+...|...|+.+..+||. +|..+++.|.++... +|++|+++++|||++. ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 36789999999999999999999999999999995 678899999874434 5999999999999999 99998
Q ss_pred -------------------eCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 608 -------------------YDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 608 -------------------~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
||.|.++..|.||+||++|.|.. +-..|.|++..
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 88999999999999999999963 33455666665
No 51
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.83 E-value=2.9e-20 Score=207.76 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=80.5
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE-
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL- 607 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~- 607 (759)
.+.++||||+....++.+...|...|+++..+|| ++|.++++.|+++... +|++|+++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 4789999999999999999999999999999999 3688999999975444 599999999999999 999986
Q ss_pred ------------------eCCCCCcchhhHHhhhhhhcCCCCceEEEEEe
Q 004347 608 ------------------YDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLA 639 (759)
Q Consensus 608 ------------------~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli 639 (759)
||.|.++..|.|++||++|.|... -.+|.|+
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~-g~~~~l~ 296 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD-GDSYYYS 296 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC-CEEEEEC
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCC-ceEEEEe
Confidence 899999999999999999985332 2334444
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.83 E-value=3.2e-19 Score=206.00 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=102.3
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
..|+.+|.+.+..+...|.+|||||.+....+.|...|...|+++..++|.....+|.-+.+.|+. +. ++|+|+.
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~--G~---VtIATnm 498 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP--AA---VTIATNM 498 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST--TC---EEEEESC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEeccc
Confidence 459999999998877789999999999999999999999999999999999887777666777775 33 7999999
Q ss_pred ccCCCCCCCC-------------------------------------CEEEEeCCCCCcchhhHHhhhhhhcCCCCc
Q 004347 593 GGLGINLTAA-------------------------------------DTCILYDSDWNPQMDLQAMDRCHRIGQTKP 632 (759)
Q Consensus 593 gg~GINL~~a-------------------------------------~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 632 (759)
+|+|+|+... .+||.||.|-++..|.|++||++|.|..-.
T Consensus 499 AgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 499 AGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp CSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred ccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 9999999863 599999999999999999999999996544
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.82 E-value=3.5e-19 Score=205.90 Aligned_cols=115 Identities=13% Similarity=0.108 Sum_probs=100.6
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
..|+..|.+.+......|.+|||||.+....+.|...|...|+++..|+|.....++.-+.+.|+. +. ++|+|+.
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~--G~---VtIATnm 517 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--GG---VTVATNM 517 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--TC---EEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEecch
Confidence 459999999998887889999999999999999999999999999999999876666556666765 33 6999999
Q ss_pred ccCCCCCCCC----------------------------------------------------CEEEEeCCCCCcchhhHH
Q 004347 593 GGLGINLTAA----------------------------------------------------DTCILYDSDWNPQMDLQA 620 (759)
Q Consensus 593 gg~GINL~~a----------------------------------------------------~~VI~~D~~wnp~~~~Qa 620 (759)
+|+|+|+... .+||.||.|-++..|.|+
T Consensus 518 AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr 597 (922)
T 1nkt_A 518 AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQL 597 (922)
T ss_dssp CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHH
T ss_pred hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHH
Confidence 9999999853 499999999999999999
Q ss_pred hhhhhhcCCCCc
Q 004347 621 MDRCHRIGQTKP 632 (759)
Q Consensus 621 ~gR~~RiGQ~k~ 632 (759)
+||++|.|..-.
T Consensus 598 ~GRTGRqGdpG~ 609 (922)
T 1nkt_A 598 RGRSGRQGDPGE 609 (922)
T ss_dssp HHTSSGGGCCEE
T ss_pred hcccccCCCCee
Confidence 999999996543
No 54
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.82 E-value=1.9e-19 Score=208.44 Aligned_cols=295 Identities=13% Similarity=0.084 Sum_probs=187.8
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhCCCceEE
Q 004347 190 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVPSVSAI 267 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~~~~~ 267 (759)
..|.|...+.+ ..++.+.|++.+||+|||++ .+.++..+... ..++||++|+..+ .|+.+.+. ...+.
T Consensus 172 ~lpiq~~~i~~----l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi~~~l~----~~~v~ 241 (618)
T 2whx_A 172 GEPDYEVDEDI----FRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEMEEALR----GLPIR 241 (618)
T ss_dssp CCCCCCCCGGG----GSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT----TSCEE
T ss_pred CCCccccCHHH----HhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHHHHHhc----CCcee
Confidence 34554443333 35588999999999999998 46777776653 3589999998865 55655554 22222
Q ss_pred EEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhh--HHHHHHhcC--CCC
Q 004347 268 IYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKC--KLLKELKYI--PIG 343 (759)
Q Consensus 268 ~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s--~~~~~l~~l--~~~ 343 (759)
|.+... .....+...+.+++++.+...+.......++++|||||||++ +... .+...+..+ ...
T Consensus 242 -~~~~~l----------~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~ 309 (618)
T 2whx_A 242 -YQTPAV----------KSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEA 309 (618)
T ss_dssp -ECCTTS----------SCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSC
T ss_pred -Eecccc----------eeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCc
Confidence 443221 011224456778888877665433333456899999999998 3221 222222222 456
Q ss_pred cEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhh
Q 004347 344 NKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKS 423 (759)
Q Consensus 344 ~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L~~il~p~~lRR~k~ 423 (759)
..+++||||-... . .|..
T Consensus 310 q~il~SAT~~~~~-~------~~~~------------------------------------------------------- 327 (618)
T 2whx_A 310 AAIFMTATPPGST-D------PFPQ------------------------------------------------------- 327 (618)
T ss_dssp EEEEECSSCTTCC-C------SSCC-------------------------------------------------------
T ss_pred cEEEEECCCchhh-h------hhhc-------------------------------------------------------
Confidence 7899999984331 1 0100
Q ss_pred HHhhhCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCCCCC
Q 004347 424 DVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFY 503 (759)
Q Consensus 424 dv~~~LP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 503 (759)
.-|.. ..+.... |. .
T Consensus 328 ----~~~~~--~~v~~~~------------------------------------------------~~--------~--- 342 (618)
T 2whx_A 328 ----SNSPI--EDIEREI------------------------------------------------PE--------R--- 342 (618)
T ss_dssp ----CSSCE--EEEECCC------------------------------------------------CS--------S---
T ss_pred ----cCCce--eeecccC------------------------------------------------CH--------H---
Confidence 00000 0000000 00 0
Q ss_pred CchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCc
Q 004347 504 PPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSY 583 (759)
Q Consensus 504 ~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 583 (759)
++..+ +..+...+.++||||+....++.+...|...|+++..+||. +|.++++.|.++...
T Consensus 343 -----------~~~~l---l~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~- 403 (618)
T 2whx_A 343 -----------SWNTG---FDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD- 403 (618)
T ss_dssp -----------CCSSS---CHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS-
T ss_pred -----------HHHHH---HHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE-
Confidence 00000 01111246799999999999999999999999999999984 788899999975444
Q ss_pred eEEEEecccccCCCCCCCCCEE--------------------EEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 584 RIFLLSTRAGGLGINLTAADTC--------------------ILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 584 ~v~LlsT~agg~GINL~~a~~V--------------------I~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
+|++|+++++|||++ +++| |+||.|-++..|.||+||++|.|..+. .+|.|++...
T Consensus 404 --VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~~~~ 479 (618)
T 2whx_A 404 --FVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSGDPL 479 (618)
T ss_dssp --EEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCCC
T ss_pred --EEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEccCCc
Confidence 599999999999997 8888 777888889999999999999986443 3566676222
Q ss_pred -HHHHHHHHHHHHH
Q 004347 644 -VEGRILKRAFSKL 656 (759)
Q Consensus 644 -vEe~i~~~~~~K~ 656 (759)
-|...+.....+.
T Consensus 480 ~~d~~~l~~le~~i 493 (618)
T 2whx_A 480 KNDEDHAHWTEAKM 493 (618)
T ss_dssp CCCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHhHh
Confidence 2334444444443
No 55
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.81 E-value=2.8e-18 Score=217.69 Aligned_cols=319 Identities=18% Similarity=0.174 Sum_probs=188.7
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHH-hCC--C
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISR-FVP--S 263 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~-~~p--~ 263 (759)
.+.|.|.+++..++ ..+.|.+++.+||+|||+.+. +++..+.. +..+++++|+|...+ .+-.+++.+ |.+ +
T Consensus 926 ~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~-~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQ-SSEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHH-CTTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHh-CCCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 57899999988776 567889999999999999975 44445544 345789999996654 444455543 332 5
Q ss_pred ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-----hhhhcCccEEEEcCcccccChhhHHHH-HH
Q 004347 264 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-----YLRHYNWKYLVVDEGHRLKNPKCKLLK-EL 337 (759)
Q Consensus 264 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-----~l~~~~~~~lIvDEaH~ikn~~s~~~~-~l 337 (759)
.++..++|......... ...+|+|+|++.+....+. .+. +..+||+||+|.+......... .+
T Consensus 1002 ~~V~~ltGd~~~~~~~~---------~~~~IiV~TPEkld~llr~~~~~~~l~--~v~lvViDE~H~l~d~rg~~le~il 1070 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLKLL---------GKGNIIISTPEKWDILSRRWKQRKNVQ--NINLFVVDEVHLIGGENGPVLEVIC 1070 (1724)
T ss_dssp CCEEECCSCHHHHHHHH---------HHCSEEEECHHHHHHHHTTTTTCHHHH--SCSEEEECCGGGGGSTTHHHHHHHH
T ss_pred CEEEEEECCCCcchhhc---------CCCCEEEECHHHHHHHHhCcccccccc--eeeEEEeechhhcCCCCCccHHHHH
Confidence 67888888765543322 2468999999987443321 122 4589999999999764333221 11
Q ss_pred -------hcCC-CCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 004347 338 -------KYIP-IGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKL 409 (759)
Q Consensus 338 -------~~l~-~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~L 409 (759)
..+. ..+.++||||- .|..++ ..|............
T Consensus 1071 ~rl~~i~~~~~~~~riI~lSATl--~N~~dl------------------a~WL~~~~~~~~~~~---------------- 1114 (1724)
T 4f92_B 1071 SRMRYISSQIERPIRIVALSSSL--SNAKDV------------------AHWLGCSATSTFNFH---------------- 1114 (1724)
T ss_dssp HHHHHHHHTTSSCCEEEEEESCB--TTHHHH------------------HHHHTCCSTTEEECC----------------
T ss_pred HHHHHHHhhcCCCceEEEEeCCC--CCHHHH------------------HHHhCCCCCCeEEeC----------------
Confidence 1222 34569999993 234444 444322110000000
Q ss_pred HHHhhhHHhhhhhhHHhhhCCCceE-EEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcC
Q 004347 410 HAILRPFLLRRMKSDVEQMLPRKKE-IILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCN 488 (759)
Q Consensus 410 ~~il~p~~lRR~k~dv~~~LP~k~e-~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~ 488 (759)
...-|-.-+ .+...........+....
T Consensus 1115 ----------------~~~RPvpL~~~i~~~~~~~~~~~~~~~~------------------------------------ 1142 (1724)
T 4f92_B 1115 ----------------PNVRPVPLELHIQGFNISHTQTRLLSMA------------------------------------ 1142 (1724)
T ss_dssp ----------------GGGCSSCEEEEEEEECCCSHHHHHHTTH------------------------------------
T ss_pred ----------------CCCCCCCeEEEEEeccCCCchhhhhhhc------------------------------------
Confidence 001121111 122222221111100000
Q ss_pred ChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHH-----------------
Q 004347 489 HPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFN----------------- 551 (759)
Q Consensus 489 hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~----------------- 551 (759)
..+...+.. ...++.+||||..+.....+...|.
T Consensus 1143 ----------------------------~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~ 1193 (1724)
T 4f92_B 1143 ----------------------------KPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTE 1193 (1724)
T ss_dssp ----------------------------HHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCH
T ss_pred ----------------------------chHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccH
Confidence 000000111 1234455555555443322221110
Q ss_pred -----------------hcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEE----eCC
Q 004347 552 -----------------EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCIL----YDS 610 (759)
Q Consensus 552 -----------------~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~----~D~ 610 (759)
.....++.+||+++..+|..+.+.|.++ .++| |++|..++.|||+++..+||. ||.
T Consensus 1194 ~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G--~i~V-LvaT~tlA~GVnlPa~~VVI~~~~~~dg 1270 (1724)
T 4f92_B 1194 KDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSG--AIQV-VVASRSLCWGMNVAAHLVIIMDTQYYNG 1270 (1724)
T ss_dssp HHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHT--SBCE-EEEEGGGSSSCCCCBSEEEEECSEEEET
T ss_pred HHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCC--CCeE-EEEChHHHcCCCCCccEEEEecCccccC
Confidence 0123478899999999999999999984 4554 899999999999998766663 332
Q ss_pred ------CCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 611 ------DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 611 ------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
|.++..+.|++||++|.|....-.++.++...
T Consensus 1271 ~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1271 KIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp TTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred cccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 46788999999999999987776666666543
No 56
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.81 E-value=1.6e-19 Score=214.32 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=95.6
Q ss_pred CCCcEEEEccchhHHHHHHHHHHh-----------cCceEEEEeCCCCHHHHHHHHHHhhcc---CCCceEEEEeccccc
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNE-----------KGYEVCRIDGSVRLDERKRQIQDFNDV---NSSYRIFLLSTRAGG 594 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~-----------~g~~~~~l~G~~~~~~R~~~i~~F~~~---~~~~~v~LlsT~agg 594 (759)
.+.++|||++....++.+...|.. .++.+..+||+++..+|..+++.|... ++..+ +|++|.+++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k-VlVAT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK-VVISTNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE-EEEECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE-EEEeCcHHH
Confidence 477999999999999888888874 588999999999999999999999811 13333 599999999
Q ss_pred CCCCCCCCCEEEEeCC------------------CCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCH
Q 004347 595 LGINLTAADTCILYDS------------------DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSV 644 (759)
Q Consensus 595 ~GINL~~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~Tv 644 (759)
+|||++++++||.|+. |.+...+.||.||++|. ++-.+|+|++....
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 9999999999999766 88999999999999998 56678899876544
No 57
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.80 E-value=2.2e-19 Score=208.68 Aligned_cols=108 Identities=23% Similarity=0.277 Sum_probs=95.9
Q ss_pred cEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEeCC-
Q 004347 532 KVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDS- 610 (759)
Q Consensus 532 kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~D~- 610 (759)
..+|||.....++.+...|...|+.++.+||+++..+|..+++.|+++++.++ +|++|+++++|||+ .+++||+|+.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCcc
Confidence 35888988999999999999999999999999999999999999997444444 49999999999999 9999999999
Q ss_pred -------------CCCcchhhHHhhhhhhcCCC-CceEEEEEeeC
Q 004347 611 -------------DWNPQMDLQAMDRCHRIGQT-KPVHVYRLATA 641 (759)
Q Consensus 611 -------------~wnp~~~~Qa~gR~~RiGQ~-k~V~Vyrli~~ 641 (759)
|+++..+.|+.||++|.|+. .+-.||++...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 45677777654
No 58
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=3.3e-19 Score=172.98 Aligned_cols=123 Identities=21% Similarity=0.295 Sum_probs=110.2
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
...|+..|.+++... .+.++||||++...++.+...|...|+++..+||+++..+|..+++.|+++.. . +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~--~-vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR--R-ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC--S-EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC--c-EEEECC
Confidence 356999999999875 57899999999999999999999999999999999999999999999997443 3 589999
Q ss_pred cccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeC
Q 004347 592 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATA 641 (759)
Q Consensus 592 agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~ 641 (759)
++++|||++.+++||+||+|||+..|.||+||++|.|+... ++.|++.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~--~~~~~~~ 137 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL--AITFVSD 137 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCE--EEEEECS
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcE--EEEEEcC
Confidence 99999999999999999999999999999999999998654 4445544
No 59
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.80 E-value=8.3e-20 Score=192.03 Aligned_cols=163 Identities=14% Similarity=0.165 Sum_probs=122.4
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHhCC--Cc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVP--SV 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p--~~ 264 (759)
.+|+|||.+++.+++. +.++||+++||+|||+++++++..+...+ .+++|||||+ .++.||.+++.+|.. ..
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~ 186 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY-EGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC-SSEEEEECSSHHHHHHHHHHHHHHTSCCGG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhcccccc
Confidence 5899999999999886 46789999999999999988877766533 3589999997 577899999999964 33
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcC-CCC
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYI-PIG 343 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l-~~~ 343 (759)
.+..+.|...... ......+|+|+||+.+.+.....+ .++++||+||||++.+. .....+..+ +..
T Consensus 187 ~~~~~~~~~~~~~---------~~~~~~~I~v~T~~~l~~~~~~~~--~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~ 253 (282)
T 1rif_A 187 MIKKIGGGASKDD---------KYKNDAPVVVGTWQTVVKQPKEWF--SQFGMMMNDECHLATGK--SISSIISGLNNCM 253 (282)
T ss_dssp GEEECSTTCSSTT---------CCCTTCSEEEECHHHHTTSCGGGG--GGEEEEEEETGGGCCHH--HHHHHTTTCTTCC
T ss_pred eEEEEeCCCcchh---------hhccCCcEEEEchHHHHhhHHHHH--hhCCEEEEECCccCCcc--cHHHHHHHhhcCC
Confidence 4555444432110 122467899999998865532223 35799999999999864 555566676 578
Q ss_pred cEEEEecCCCCCCHHHHHhhhhhccC
Q 004347 344 NKLLLTGTPLQNNLAELWSLLHFILP 369 (759)
Q Consensus 344 ~rllLTgTPl~n~~~el~sll~fl~p 369 (759)
++++|||||. |...+++.++.++.|
T Consensus 254 ~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 254 FKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp EEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred eEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 8999999995 555778888877766
No 60
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.79 E-value=4.3e-19 Score=170.67 Aligned_cols=133 Identities=22% Similarity=0.361 Sum_probs=115.1
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
.+.|+..|.+++... .+.++||||++...++.+...|...|+++..+||+++..+|..++++|+++. +. +|++|+
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~-vlv~T~ 93 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE--YR-YLVATD 93 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CS-EEEECG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--Ce-EEEECC
Confidence 456999999999874 6789999999999999999999999999999999999999999999999743 33 589999
Q ss_pred cccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHHHHHHHHHH
Q 004347 592 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAF 653 (759)
Q Consensus 592 agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvEe~i~~~~~ 653 (759)
++++|||++.+++||+||+|||+..|.||+||++|.|+... ++.|++.. |...+....
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~--~~~~~~~~--~~~~~~~i~ 151 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGK--AISFVTAF--EKRFLADIE 151 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEE--EEEEECGG--GHHHHHHHH
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCce--EEEEecHH--HHHHHHHHH
Confidence 99999999999999999999999999999999999998754 45556543 444444443
No 61
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.78 E-value=3.1e-19 Score=175.33 Aligned_cols=126 Identities=20% Similarity=0.320 Sum_probs=97.9
Q ss_pred hhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEec
Q 004347 511 EQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLST 590 (759)
Q Consensus 511 ~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT 590 (759)
..+.|+..|.++|... ..+.++||||++...++.+...|...|+.+..++|+++..+|..+++.|+++. ++ +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~--~~-vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SP-ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS--SS-EEEEE
T ss_pred CcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC--Ce-EEEEc
Confidence 3467999999999874 35789999999999999999999999999999999999999999999999744 33 58999
Q ss_pred ccccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 591 RAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 591 ~agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
+++++|||++.+++||+||+|||+..+.||+||++|.|+.. .++.|++..
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~ 153 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 153 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCE--EEEEEECGG
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCc--EEEEEEchh
Confidence 99999999999999999999999999999999999999764 455566654
No 62
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.78 E-value=5.7e-20 Score=211.13 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=85.2
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEE--
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCI-- 606 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI-- 606 (759)
.+.++|||++....++.+...|...|+++..+||++++.+ |.+ ... -+|++|+++++|||+. ++.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~--~~~-~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPT--IGD-VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCS--SSC-EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHh--CCC-cEEEECChHHccCCCC-CcEEEec
Confidence 4789999999999999999999999999999999999764 333 222 3699999999999996 99988
Q ss_pred --------EeC-----------CCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCHH
Q 004347 607 --------LYD-----------SDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVE 645 (759)
Q Consensus 607 --------~~D-----------~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TvE 645 (759)
+|| .|.++..|.||+||++| |..- . |.|++.....
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G-~--i~lvt~~e~~ 517 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG-I--YRFVTPGERP 517 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE-E--EEESCCCCBC
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC-E--EEEEecchhh
Confidence 577 78888999999999999 6443 3 7888876543
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.77 E-value=5.7e-18 Score=214.81 Aligned_cols=325 Identities=18% Similarity=0.181 Sum_probs=192.9
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhCC--------CCCCeEEEECCcc-HHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNG--------LHGPYLVIAPLST-LSNWVNE 256 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~~--------~~~~~LIV~P~sl-l~~W~~E 256 (759)
..+|.|.|..++..++ ..+.|.+++.+||+|||+.+. +++..+.... ..+++|+|+|... ..+-.++
T Consensus 77 ~~~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 77 FKTLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp CSBCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHH
Confidence 3478999999988766 568899999999999999874 5555554421 2346899999664 4555566
Q ss_pred HHHhCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHH-----HhhhhcCccEEEEcCcccccCh
Q 004347 257 ISRFVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR-----KYLRHYNWKYLVVDEGHRLKNP 329 (759)
Q Consensus 257 ~~~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~-----~~l~~~~~~~lIvDEaH~ikn~ 329 (759)
|.+.+. ++.+..++|+.... .......+|+|||++.+..-.+ .++. ...+|||||+|.+.+.
T Consensus 154 l~~~~~~~gi~V~~~tGd~~~~---------~~~~~~~~IlVtTpEkld~llr~~~~~~~l~--~v~~vIiDEvH~l~d~ 222 (1724)
T 4f92_B 154 FGKRLATYGITVAELTGDHQLC---------KEEISATQIIVCTPEKWDIITRKGGERTYTQ--LVRLIILDEIHLLHDD 222 (1724)
T ss_dssp HHHHHTTTTCCEEECCSSCSSC---------CTTGGGCSEEEECHHHHHHHTTSSTTHHHHT--TEEEEEETTGGGGGST
T ss_pred HHHHHhhCCCEEEEEECCCCCC---------ccccCCCCEEEECHHHHHHHHcCCccchhhc--CcCEEEEecchhcCCc
Confidence 655432 46788888865321 1111367899999998633221 1222 4689999999988754
Q ss_pred hhHHH-----HHH---hcC-CCCcEEEEecCCCCCCHHHHHhhhhhccCCCCCChHHHHHHhcccCCCCchhhHHHHHHH
Q 004347 330 KCKLL-----KEL---KYI-PIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEK 400 (759)
Q Consensus 330 ~s~~~-----~~l---~~l-~~~~rllLTgTPl~n~~~el~sll~fl~p~~~~~~~~F~~~f~~~~~~~~~~~~~~~~~~ 400 (759)
..... +.+ ... +..++|+||||- .|..++ ..|.......
T Consensus 223 RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dv------------------A~wL~~~~~~------------ 270 (1724)
T 4f92_B 223 RGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDV------------------ATFLRVDPAK------------ 270 (1724)
T ss_dssp THHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHH------------------HHHTTCCHHH------------
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHH------------------HHHhCCCCCC------------
Confidence 32222 211 122 344679999993 244444 3333210000
Q ss_pred HHHHHHHHHHHHhhhHHhhhhhhHHhhhCCCce-EEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHH
Q 004347 401 RRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKK-EIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNL 479 (759)
Q Consensus 401 ~~~~~~~~L~~il~p~~lRR~k~dv~~~LP~k~-e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (759)
. .+.. . ...-|-.- ..++.+.-......+ ..+ ..
T Consensus 271 ----------~---~~~~---~---~~~RPvpL~~~~~~~~~~~~~~~~-~~~-~~------------------------ 305 (1724)
T 4f92_B 271 ----------G---LFYF---D---NSFRPVPLEQTYVGITEKKAIKRF-QIM-NE------------------------ 305 (1724)
T ss_dssp ----------H---EEEC---C---GGGCSSCEEEECCEECCCCHHHHH-HHH-HH------------------------
T ss_pred ----------C---eEEE---C---CCCccCccEEEEeccCCcchhhhh-HHH-HH------------------------
Confidence 0 0000 0 00112111 111111111110000 000 00
Q ss_pred HHHHHHhcCChhhhhhhccCCCCCCchHHHHhhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHH----h---
Q 004347 480 MVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFN----E--- 552 (759)
Q Consensus 480 l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~----~--- 552 (759)
.+...+.+ ...++.+||||.++.....+...|. .
T Consensus 306 --------------------------------------~~~~~v~~-~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~ 346 (1724)
T 4f92_B 306 --------------------------------------IVYEKIME-HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDT 346 (1724)
T ss_dssp --------------------------------------HHHHHHTT-CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTS
T ss_pred --------------------------------------HHHHHHHH-HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 00000000 0235678888887654333322221 1
Q ss_pred ------------------------------cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCC
Q 004347 553 ------------------------------KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAA 602 (759)
Q Consensus 553 ------------------------------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a 602 (759)
....++..||+++..+|..+.+.|.++ .++| |++|.+++.||||++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G--~i~v-lvaTsTLa~GVNlPa~ 423 (1724)
T 4f92_B 347 LGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADK--HIQV-LVSTATLAWGVNLPAH 423 (1724)
T ss_dssp TTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTT--CCCE-EEECHHHHHHSCCCBS
T ss_pred hhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCC--CCeE-EEEcchhHhhCCCCCc
Confidence 123478899999999999999999974 4554 9999999999999988
Q ss_pred CEEEE----eCCC------CCcchhhHHhhhhhhcCCCCceEEEEEeeCCCH
Q 004347 603 DTCIL----YDSD------WNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSV 644 (759)
Q Consensus 603 ~~VI~----~D~~------wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~Tv 644 (759)
+.||. ||+. .++..+.|++|||+|.|....-.++.++..+..
T Consensus 424 ~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 424 TVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp EEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTC
T ss_pred eEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhH
Confidence 88874 6653 478899999999999998766666666666543
No 64
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.77 E-value=2.9e-18 Score=165.13 Aligned_cols=123 Identities=20% Similarity=0.321 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccccc
Q 004347 515 KFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGG 594 (759)
Q Consensus 515 K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg 594 (759)
|+..|.+++... .+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+++.. + +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~--~-vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS--R-ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC--S-EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC--E-EEEEcChhh
Confidence 999999999875 57899999999999999999999999999999999999999999999997443 3 589999999
Q ss_pred CCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCCH
Q 004347 595 LGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSV 644 (759)
Q Consensus 595 ~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~Tv 644 (759)
+|+|++.+++||+||+|||+..+.||+||++|.|+.. .+|.|++.+..
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~~~~~~~~ 139 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG--VAINFVTNEDV 139 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----C--EEEEEEETTTH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc--eEEEEEcchHH
Confidence 9999999999999999999999999999999999765 45667777653
No 65
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=171.69 Aligned_cols=123 Identities=22% Similarity=0.289 Sum_probs=106.1
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
...|+..|.++|.. .+.++||||++...++.+...|...|+++..++|+++..+|.++++.|+++. +. +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~--~~-vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK--KD-VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS--CS-EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CE-EEEEcC
Confidence 35688888887764 4679999999999999999999999999999999999999999999999744 33 589999
Q ss_pred cccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 592 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 592 agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
++++|||++.+++||+||+|||+..|.||+||++|.|++.. ++.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~--~i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI--ATTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCE--EEEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcE--EEEEEcCc
Confidence 99999999999999999999999999999999999998764 45566654
No 66
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=6.6e-18 Score=172.60 Aligned_cols=143 Identities=23% Similarity=0.319 Sum_probs=111.0
Q ss_pred cccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHhCC
Q 004347 184 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFVP 262 (759)
Q Consensus 184 ~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p 262 (759)
...+..|+|||.+++.+++. +.++|++++||+|||+++++++..+ .+++|||||. .++.||.+++.+|
T Consensus 88 ~~~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 88 FDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred ccCCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 34456899999999998764 5569999999999999998887654 4689999998 6779999999995
Q ss_pred Cce-EEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCC
Q 004347 263 SVS-AIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIP 341 (759)
Q Consensus 263 ~~~-~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~ 341 (759)
+.. +..++|... ...+|+|+||+.+..... .+. ..|++|||||||++.+... .+.+..++
T Consensus 157 ~~~~v~~~~g~~~---------------~~~~i~v~T~~~l~~~~~-~~~-~~~~llIiDEaH~l~~~~~--~~i~~~~~ 217 (237)
T 2fz4_A 157 GEEYVGEFSGRIK---------------ELKPLTVSTYDSAYVNAE-KLG-NRFMLLIFDEVHHLPAESY--VQIAQMSI 217 (237)
T ss_dssp CGGGEEEESSSCB---------------CCCSEEEEEHHHHHHTHH-HHT-TTCSEEEEECSSCCCTTTH--HHHHHTCC
T ss_pred CCCeEEEEeCCCC---------------CcCCEEEEeHHHHHhhHH-Hhc-ccCCEEEEECCccCCChHH--HHHHHhcc
Confidence 455 777777652 245899999999877653 232 3589999999999987543 34556677
Q ss_pred CCcEEEEecCCCCCC
Q 004347 342 IGNKLLLTGTPLQNN 356 (759)
Q Consensus 342 ~~~rllLTgTPl~n~ 356 (759)
..++|+|||||.+++
T Consensus 218 ~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 218 APFRLGLTATFERED 232 (237)
T ss_dssp CSEEEEEEESCC---
T ss_pred CCEEEEEecCCCCCC
Confidence 889999999998765
No 67
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=163.03 Aligned_cols=123 Identities=17% Similarity=0.310 Sum_probs=105.1
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccc
Q 004347 514 GKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAG 593 (759)
Q Consensus 514 ~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ag 593 (759)
.|+..|.+++... .+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+++. ++ +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~--~~-vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK--EK-VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS--CS-EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--Ce-EEEEecch
Confidence 3888888888764 5679999999999999999999999999999999999999999999999744 33 59999999
Q ss_pred cCCCCCCCCCEEEEeCCC------CCcchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 594 GLGINLTAADTCILYDSD------WNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 594 g~GINL~~a~~VI~~D~~------wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
++|||++.+++||+||+| |++..|.||+||++|.|+. -.+|.|++.+.
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 6678899999999999954 56677777664
No 68
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.74 E-value=1.2e-16 Score=186.74 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCC
Q 004347 517 RLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLG 596 (759)
Q Consensus 517 ~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~G 596 (759)
..|...|......+.++||||......+.|..+|...|+++..+||+++..+|.+++++|..+. +. +|++|+++++|
T Consensus 432 ~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~--~~-VLVaT~~l~~G 508 (661)
T 2d7d_A 432 DDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK--YD-VLVGINLLREG 508 (661)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS--CS-EEEESCCCSTT
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC--eE-EEEecchhhCC
Confidence 3344445555567889999999999999999999999999999999999999999999999743 33 59999999999
Q ss_pred CCCCCCCEEEEeCC-----CCCcchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 597 INLTAADTCILYDS-----DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 597 INL~~a~~VI~~D~-----~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
+|++.+++||+||. |+++..|.|++||++|. ++-.++.|++..+
T Consensus 509 lDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 509 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKIT 557 (661)
T ss_dssp CCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCC
T ss_pred cccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCC
Confidence 99999999999998 89999999999999996 3455677787765
No 69
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.74 E-value=2.7e-17 Score=165.12 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=110.5
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
...|+..|.+++... .+.++||||+.....+.+...|...|+.+..+||+++..+|..+++.|+++. ++ +|++|+
T Consensus 15 ~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~-vlvaT~ 89 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE--VR-VLVATD 89 (212)
T ss_dssp TTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS--CC-EEEECT
T ss_pred HHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC--Ce-EEEecC
Confidence 356999999999854 5789999999999999999999999999999999999999999999999744 33 599999
Q ss_pred cccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 592 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 592 agg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
++++|||++++++||+||+||++..|.||+||++|.|+. -.+|.|++..
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~--g~~~~l~~~~ 138 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPR 138 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC----BEEEEEECGG
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCC--CeEEEEEchh
Confidence 999999999999999999999999999999999999966 4566677664
No 70
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.56 E-value=4.7e-19 Score=171.64 Aligned_cols=123 Identities=20% Similarity=0.322 Sum_probs=108.9
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
..|+..|.+++... .+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+++. +. +|++|++
T Consensus 15 ~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~-vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR--VN-VLVATDV 89 (170)
Confidence 55888888888763 5789999999999999999999999999999999999999999999999743 33 6999999
Q ss_pred ccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCC
Q 004347 593 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQ 642 (759)
Q Consensus 593 gg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~ 642 (759)
+++|||++.+++||+||+|||+..+.||+||++|.||...+.+ |++..
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~--~~~~~ 137 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS--LVEAH 137 (170)
Confidence 9999999999999999999999999999999999998766543 44443
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.71 E-value=1.3e-15 Score=172.70 Aligned_cols=116 Identities=15% Similarity=0.166 Sum_probs=99.3
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
...|+..+.+.+......|.+|||||.+....+.|...|...|+++..++|.....+|.-+...|.. +. ++|+|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~---VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM---VTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce---EEEEcc
Confidence 3458999999998887789999999999999999999999999999999999554444434445543 33 799999
Q ss_pred cccCCCCCC--------CCCEEEEeCCCCCcchhhHHhhhhhhcCCCCc
Q 004347 592 AGGLGINLT--------AADTCILYDSDWNPQMDLQAMDRCHRIGQTKP 632 (759)
Q Consensus 592 agg~GINL~--------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 632 (759)
.+|+|+|+. +..+||+||.|-++..|.|++||++|.|..-.
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~ 579 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE 579 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCee
Confidence 999999997 66799999999999999999999999997654
No 72
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.70 E-value=2.6e-15 Score=175.52 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=109.3
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccc
Q 004347 514 GKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAG 593 (759)
Q Consensus 514 ~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ag 593 (759)
+++..|...|......+.++||||....+.+.|..+|...|+++..+||+++..+|.++++.|..+ .+. +|++|+++
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g--~~~-VLvaT~~l 499 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG--HYD-CLVGINLL 499 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT--SCS-EEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC--Cce-EEEccChh
Confidence 466666667777777899999999999999999999999999999999999999999999999974 344 59999999
Q ss_pred cCCCCCCCCCEEEEeCC-----CCCcchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 594 GLGINLTAADTCILYDS-----DWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 594 g~GINL~~a~~VI~~D~-----~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
++|+|++.++.||+||. |+++..+.|++||++|.| +-.++.|+...+
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 551 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---RGEVWLYADRVS 551 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC---CCEEEEEEcCCC
Confidence 99999999999999998 899999999999999986 335666777765
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.70 E-value=1.5e-16 Score=158.71 Aligned_cols=157 Identities=18% Similarity=0.140 Sum_probs=115.1
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh----CCCCCCeEEEECC-ccHHHHHHHHHHhC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG----NGLHGPYLVIAPL-STLSNWVNEISRFV 261 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~----~~~~~~~LIV~P~-sll~~W~~E~~~~~ 261 (759)
...|+|||.+++.+++. +.++++..+||+|||++++..+..... .+...++||+||. .+..||.+++.++.
T Consensus 21 ~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 96 (207)
T 2gxq_A 21 LTTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA 96 (207)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh
Confidence 35799999999999875 788999999999999986554444332 2345679999998 57799999999999
Q ss_pred CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccC--hhhHHHHHHh
Q 004347 262 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKCKLLKELK 338 (759)
Q Consensus 262 p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn--~~s~~~~~l~ 338 (759)
+...+..++|............ ..++|+|+|++.+...+.. .+....+++||+||||++.+ ....+...+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~ 170 (207)
T 2gxq_A 97 PHLKVVAVYGGTGYGKQKEALL------RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLS 170 (207)
T ss_dssp TTSCEEEECSSSCSHHHHHHHH------HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred hcceEEEEECCCChHHHHHHhh------CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHH
Confidence 8888888887654332221111 2578999999998766533 23345689999999999853 3344555555
Q ss_pred cCC-CCcEEEEecCCC
Q 004347 339 YIP-IGNKLLLTGTPL 353 (759)
Q Consensus 339 ~l~-~~~rllLTgTPl 353 (759)
.++ ....+++||||-
T Consensus 171 ~~~~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 171 ATPPSRQTLLFSATLP 186 (207)
T ss_dssp TSCTTSEEEEECSSCC
T ss_pred hCCccCeEEEEEEecC
Confidence 665 445799999983
No 74
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.69 E-value=2.8e-16 Score=158.49 Aligned_cols=163 Identities=17% Similarity=0.179 Sum_probs=115.4
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCC-CCCeEEEECC-ccHHHHHHHHHHhC---C
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGL-HGPYLVIAPL-STLSNWVNEISRFV---P 262 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~-~~~~LIV~P~-sll~~W~~E~~~~~---p 262 (759)
..|+|||.+++..++. +.++|+.++||+|||++++..+........ ..++|||||. .+..||.+++.++. |
T Consensus 35 ~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (220)
T 1t6n_A 35 EHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 110 (220)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 4699999999998875 788999999999999987766665544332 3489999997 46789999999986 4
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh---hhHHHHHHh
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP---KCKLLKELK 338 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~---~s~~~~~l~ 338 (759)
+..+..++|............ ...++|+|+|++.+...... .+....+++||+||||++... ...+...+.
T Consensus 111 ~~~v~~~~g~~~~~~~~~~~~-----~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~ 185 (220)
T 1t6n_A 111 NVKVAVFFGGLSIKKDEEVLK-----KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR 185 (220)
T ss_dssp TCCEEEESCCSCHHHHHHHHH-----HSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHH
T ss_pred CceEEEEeCCCChHHHHHHHh-----cCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHH
Confidence 678888888654333221111 13468999999998776532 233346899999999998642 233344444
Q ss_pred cCC-CCcEEEEecCCCCCCHHHH
Q 004347 339 YIP-IGNKLLLTGTPLQNNLAEL 360 (759)
Q Consensus 339 ~l~-~~~rllLTgTPl~n~~~el 360 (759)
.++ ....+++||||-. ...++
T Consensus 186 ~~~~~~~~i~~SAT~~~-~~~~~ 207 (220)
T 1t6n_A 186 MTPHEKQVMMFSATLSK-EIRPV 207 (220)
T ss_dssp TSCSSSEEEEEESCCCT-TTHHH
T ss_pred hCCCcCeEEEEEeecCH-HHHHH
Confidence 554 4567999999944 34443
No 75
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.68 E-value=4.7e-17 Score=163.32 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=105.1
Q ss_pred ccccCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC----CCCCCeEEEECCc-cHHH-HHHH
Q 004347 183 SLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN----GLHGPYLVIAPLS-TLSN-WVNE 256 (759)
Q Consensus 183 ~~~~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~----~~~~~~LIV~P~s-ll~~-W~~E 256 (759)
+......|+|||.+++.+++. +.++|+.++||+|||++++..+..+... +..+++|||||.. ++.| |.++
T Consensus 27 ~~~~~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 27 SPEPELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp CCSCCCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHT
T ss_pred CccCCCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHH
Confidence 344456899999999998874 6889999999999999988777665432 3367999999985 5577 8899
Q ss_pred HHHhCC-CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh-------hhhcCccEEEEcCcccccC
Q 004347 257 ISRFVP-SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY-------LRHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 257 ~~~~~p-~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~-------l~~~~~~~lIvDEaH~ikn 328 (759)
+.+|.+ ...+..++|........... ...++|+|+||+.+...+... +....|++|||||||++..
T Consensus 103 ~~~~~~~~~~v~~~~g~~~~~~~~~~~------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 103 FQPFLKKWYRVIGLSGDTQLKISFPEV------VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp HHHHHTTTSCEEECCC---CCCCHHHH------HHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred HHHHhccCceEEEEeCCcccchhHHhh------ccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 998865 46777777754321111000 024689999999987765321 3345689999999999964
Q ss_pred hh--hHHH-HHHhcC--------------CCCcEEEEecC
Q 004347 329 PK--CKLL-KELKYI--------------PIGNKLLLTGT 351 (759)
Q Consensus 329 ~~--s~~~-~~l~~l--------------~~~~rllLTgT 351 (759)
.. ..+. ..+... ...++|+||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 177 EAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred CCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 32 1221 111111 45678999998
No 76
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.68 E-value=3.7e-16 Score=158.93 Aligned_cols=154 Identities=20% Similarity=0.194 Sum_probs=113.9
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHH-HHHHHHHHhCCCCCCeEEEECC-ccHHHHHHHHHHhC---C
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT-IAFLAHLKGNGLHGPYLVIAPL-STLSNWVNEISRFV---P 262 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~a-i~li~~l~~~~~~~~~LIV~P~-sll~~W~~E~~~~~---p 262 (759)
..|+|||.+++..++. +.++|+..+||+|||++. +.++..+...+...++|||||+ .+..||.+++.++. +
T Consensus 45 ~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 120 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKME 120 (230)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4699999999998865 789999999999999985 4455555444556789999997 56789999999986 3
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh---hhHHHHHHh
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP---KCKLLKELK 338 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~---~s~~~~~l~ 338 (759)
...+.+++|........... ...+|+|+|++.+...+.. .+...++++||+||||++.+. ...+...+.
T Consensus 121 ~~~~~~~~g~~~~~~~~~~~-------~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~ 193 (230)
T 2oxc_A 121 GLECHVFIGGTPLSQDKTRL-------KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYS 193 (230)
T ss_dssp TCCEEEECTTSCHHHHHHHT-------TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHH
T ss_pred CceEEEEeCCCCHHHHHHhc-------cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHH
Confidence 67788888866543332211 3579999999998776532 233346789999999999543 344445556
Q ss_pred cCC-CCcEEEEecCC
Q 004347 339 YIP-IGNKLLLTGTP 352 (759)
Q Consensus 339 ~l~-~~~rllLTgTP 352 (759)
.++ ...++++|||+
T Consensus 194 ~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 194 SLPASKQMLAVSATY 208 (230)
T ss_dssp HSCSSCEEEEEESCC
T ss_pred hCCCCCeEEEEEecc
Confidence 665 45679999996
No 77
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.67 E-value=4.8e-16 Score=158.65 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=113.4
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHH-HHHHhC----CCCCCeEEEECC-ccHHHHHHHHHHh
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGN----GLHGPYLVIAPL-STLSNWVNEISRF 260 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li-~~l~~~----~~~~~~LIV~P~-sll~~W~~E~~~~ 260 (759)
...|+|||.+++.+++. +.++|+..+||+|||++++..+ ..+... ....++|||||+ .+..||.+++.++
T Consensus 45 ~~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 45 YRLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp CCBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 35799999999999875 7899999999999999865544 444331 234579999997 5678999999998
Q ss_pred CCC--ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh--hhhcCccEEEEcCcccccCh--hhHHH
Q 004347 261 VPS--VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY--LRHYNWKYLVVDEGHRLKNP--KCKLL 334 (759)
Q Consensus 261 ~p~--~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~--l~~~~~~~lIvDEaH~ikn~--~s~~~ 334 (759)
.+. ..+..++|........... ..++|+|+|++.+...+... +...++++||+||||++.+. ...+.
T Consensus 121 ~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 193 (236)
T 2pl3_A 121 GKNHDFSAGLIIGGKDLKHEAERI-------NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMN 193 (236)
T ss_dssp TTTSSCCEEEECCC--CHHHHHHH-------TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHH
T ss_pred hCCCCeeEEEEECCCCHHHHHHhC-------CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHH
Confidence 754 6777777766544332221 36799999999997765332 33456899999999998643 34556
Q ss_pred HHHhcCC-CCcEEEEecCCC
Q 004347 335 KELKYIP-IGNKLLLTGTPL 353 (759)
Q Consensus 335 ~~l~~l~-~~~rllLTgTPl 353 (759)
..+..++ ...++++|||+-
T Consensus 194 ~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 194 AVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp HHHHTSCTTSEEEEEESSCC
T ss_pred HHHHhCCCCCeEEEEEeeCC
Confidence 6666665 445799999973
No 78
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.67 E-value=2.8e-16 Score=165.54 Aligned_cols=124 Identities=18% Similarity=0.244 Sum_probs=108.1
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccc
Q 004347 513 CGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRA 592 (759)
Q Consensus 513 s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~a 592 (759)
..|+..|.+++... .+.++||||+.....+.+...|...|+.+..+||++++.+|..+++.|+++... +|++|++
T Consensus 13 ~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~v 87 (300)
T 3i32_A 13 RGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATDV 87 (300)
T ss_dssp SSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECST
T ss_pred HHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEech
Confidence 56999999999875 488999999999999999999999999999999999999999999999985433 5999999
Q ss_pred ccCCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhcCCCCceEEEEEeeCCC
Q 004347 593 GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQS 643 (759)
Q Consensus 593 gg~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~T 643 (759)
+++|||++++++||+||+||++..|.||+||++|.|+. -.+|.|++...
T Consensus 88 a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~e 136 (300)
T 3i32_A 88 AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPRE 136 (300)
T ss_dssp TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSST
T ss_pred hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChHH
Confidence 99999999999999999999999999999999999976 46667777653
No 79
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.66 E-value=3.6e-16 Score=157.66 Aligned_cols=162 Identities=17% Similarity=0.090 Sum_probs=114.9
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHH-HHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC--
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li-~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 262 (759)
...++|||.+++..++. +.++|+..+||+|||++.+..+ ..+...+...++|||||+. +..||.+++.++..
T Consensus 24 ~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 99 (219)
T 1q0u_A 24 FYKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFC 99 (219)
T ss_dssp CCSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhc
Confidence 34799999999999886 7899999999999999855444 4433333456899999975 66889999988764
Q ss_pred ----CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccC--hhhHHHH
Q 004347 263 ----SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKCKLLK 335 (759)
Q Consensus 263 ----~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn--~~s~~~~ 335 (759)
...+..+.|....... .......++|+|+|++.+...+.. .+....+++||+||||++.+ ....+..
T Consensus 100 ~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~ 173 (219)
T 1q0u_A 100 PKDRMIVARCLIGGTDKQKA------LEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQ 173 (219)
T ss_dssp CGGGCCCEEEECCCSHHHHT------TCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHH
T ss_pred ccccceEEEEEeCCCCHHHH------HHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHH
Confidence 4566677776543321 112234679999999998766532 23334678999999999864 3344555
Q ss_pred HHhcCC-CCcEEEEecCCCCCCHHH
Q 004347 336 ELKYIP-IGNKLLLTGTPLQNNLAE 359 (759)
Q Consensus 336 ~l~~l~-~~~rllLTgTPl~n~~~e 359 (759)
.+..++ ...++++|||+ ++.+.+
T Consensus 174 i~~~~~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 174 IAARMPKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp HHHTSCTTCEEEEEESCC-CGGGHH
T ss_pred HHHhCCcccEEEEEecCC-CHHHHH
Confidence 666665 45679999997 344444
No 80
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=157.16 Aligned_cols=157 Identities=20% Similarity=0.179 Sum_probs=114.2
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC--
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 262 (759)
...++|||.+++..++. +.++|+..+||+|||++.+ .++..+.......++|||||+. +..||.+++.++..
T Consensus 63 ~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 138 (249)
T 3ber_A 63 WTKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI 138 (249)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 35899999999998875 7899999999999999855 4444555555556799999975 56889999998854
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccC--hhhHHHHHHh
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKN--PKCKLLKELK 338 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn--~~s~~~~~l~ 338 (759)
+..+..+.|........... ...++|+|+|++.+...+.. .+....+++||+||||++.+ ....+...+.
T Consensus 139 ~~~~~~~~g~~~~~~~~~~~------~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~ 212 (249)
T 3ber_A 139 GVQSAVIVGGIDSMSQSLAL------AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 212 (249)
T ss_dssp TCCEEEECTTSCHHHHHHHH------HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHH
T ss_pred CeeEEEEECCCChHHHHHHh------cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHH
Confidence 45677777755433322221 14679999999999776533 23334678999999999864 3344555566
Q ss_pred cCC-CCcEEEEecCCC
Q 004347 339 YIP-IGNKLLLTGTPL 353 (759)
Q Consensus 339 ~l~-~~~rllLTgTPl 353 (759)
.++ ...++++|||+-
T Consensus 213 ~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 213 VIPRDRKTFLFSATMT 228 (249)
T ss_dssp SSCSSSEEEEEESSCC
T ss_pred hCCCCCeEEEEeccCC
Confidence 665 456799999983
No 81
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.65 E-value=1.1e-15 Score=152.42 Aligned_cols=157 Identities=17% Similarity=0.113 Sum_probs=113.4
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHH-hCCCCCCeEEEECCc-cHHHHHHHHHHhCC--
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~-~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 262 (759)
...|+|||.+++..++. +.++++..+||+|||++++..+.... ......++|||||.. +..||.+.+.++..
T Consensus 23 ~~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 98 (206)
T 1vec_A 23 WEKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHM 98 (206)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhc
Confidence 34799999999998875 78999999999999988665444333 333445799999975 56889999988763
Q ss_pred -CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh--hhHHHHHHh
Q 004347 263 -SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP--KCKLLKELK 338 (759)
Q Consensus 263 -~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~--~s~~~~~l~ 338 (759)
...+..++|........... ...++|+|+|++.+...+.. .+...++++||+||||++... ...+...+.
T Consensus 99 ~~~~~~~~~g~~~~~~~~~~~------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~ 172 (206)
T 1vec_A 99 GGAKVMATTGGTNLRDDIMRL------DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIIL 172 (206)
T ss_dssp SSCCEEEECSSSCHHHHHHHT------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred CCceEEEEeCCccHHHHHHhc------CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHH
Confidence 56777787776554433221 24679999999998766532 223346799999999998653 334445555
Q ss_pred cCC-CCcEEEEecCCC
Q 004347 339 YIP-IGNKLLLTGTPL 353 (759)
Q Consensus 339 ~l~-~~~rllLTgTPl 353 (759)
.++ ...++++|||+-
T Consensus 173 ~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 173 TLPKNRQILLYSATFP 188 (206)
T ss_dssp HSCTTCEEEEEESCCC
T ss_pred hCCccceEEEEEeeCC
Confidence 555 567799999983
No 82
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.65 E-value=1e-15 Score=154.84 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=109.5
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHH-HHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC--
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ-TIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP-- 262 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~-ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 262 (759)
...|+|||.+++..++. +.++|+..+||+|||++ .+.++..+.......++||+||.. +..||.+++.++.+
T Consensus 34 ~~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 109 (224)
T 1qde_A 34 FEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM 109 (224)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhccc
Confidence 34799999999998875 78899999999999998 455555554444556899999975 56889999999865
Q ss_pred CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccC--hhhHHHHHHhc
Q 004347 263 SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKCKLLKELKY 339 (759)
Q Consensus 263 ~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn--~~s~~~~~l~~ 339 (759)
+..+..++|......... .....+|+|+|++.+...+.. .+...++++||+||||++.+ ....+...+..
T Consensus 110 ~~~~~~~~g~~~~~~~~~-------~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~ 182 (224)
T 1qde_A 110 DIKVHACIGGTSFVEDAE-------GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 182 (224)
T ss_dssp CCCEEEECC-----------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred CceEEEEeCCcchHHHHh-------cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHh
Confidence 456777777654332211 112479999999998766532 22334579999999999853 33445555555
Q ss_pred CC-CCcEEEEecCCC
Q 004347 340 IP-IGNKLLLTGTPL 353 (759)
Q Consensus 340 l~-~~~rllLTgTPl 353 (759)
++ ....+++|||+-
T Consensus 183 ~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 183 LPPTTQVVLLSATMP 197 (224)
T ss_dssp SCTTCEEEEEESSCC
T ss_pred CCccCeEEEEEeecC
Confidence 54 445799999983
No 83
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.62 E-value=3.8e-15 Score=153.63 Aligned_cols=156 Identities=18% Similarity=0.208 Sum_probs=109.7
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHH-HHHHhCC---------CCCCeEEEECCc-cHHHHHHH
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGNG---------LHGPYLVIAPLS-TLSNWVNE 256 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li-~~l~~~~---------~~~~~LIV~P~s-ll~~W~~E 256 (759)
..|+|||.+++..++. +.++|+..+||+|||++++..+ ..+...+ ...++|||||+. +..||.++
T Consensus 44 ~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 4799999999998875 7889999999999999865444 4443322 235799999975 66899999
Q ss_pred HHHhCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh--hh
Q 004347 257 ISRFVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP--KC 331 (759)
Q Consensus 257 ~~~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~--~s 331 (759)
+.++.. ...+..++|........... ...++|+|+|++.+...+.. .+....+++||+||||++.+. ..
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~ 193 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHSQIREV------QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEP 193 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHHHHH------SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHH
T ss_pred HHHHhccCCceEEEEECCCCHHHHHHHh------CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHH
Confidence 999864 35666666655443332222 14679999999998776532 123345789999999998643 34
Q ss_pred HHHHHHhcC--C---CCcEEEEecCCC
Q 004347 332 KLLKELKYI--P---IGNKLLLTGTPL 353 (759)
Q Consensus 332 ~~~~~l~~l--~---~~~rllLTgTPl 353 (759)
.+...+..+ . ....+++||||-
T Consensus 194 ~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 194 QIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred HHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 455555533 2 345799999983
No 84
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.61 E-value=3.8e-15 Score=152.18 Aligned_cols=157 Identities=20% Similarity=0.144 Sum_probs=107.7
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHH-hCCCCCCeEEEECCc-cHHHHHHHHHHhCC--C
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLS-TLSNWVNEISRFVP--S 263 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~-~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~ 263 (759)
..|+|||.+++..++. +.++|+..+||+|||++.+..+.... ......++|||||+. +..||.+++.++.. .
T Consensus 51 ~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMG 126 (237)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcC
Confidence 4699999999998875 78899999999999998554444333 333456899999975 66889999999875 3
Q ss_pred ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCccccc--ChhhHHHHHHhcC
Q 004347 264 VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLK--NPKCKLLKELKYI 340 (759)
Q Consensus 264 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ik--n~~s~~~~~l~~l 340 (759)
..+..+.|......... ......++|+|+|++.+...+.. .+....+++||+||||++. +....+...+..+
T Consensus 127 ~~~~~~~g~~~~~~~~~-----~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 201 (237)
T 3bor_A 127 ATCHACIGGTNVRNEMQ-----KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL 201 (237)
T ss_dssp CCEEEECC------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHS
T ss_pred ceEEEEECCCchHHHHH-----HHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhC
Confidence 55666666544332211 11123479999999998766532 2334468999999999984 3344556666666
Q ss_pred C-CCcEEEEecCCC
Q 004347 341 P-IGNKLLLTGTPL 353 (759)
Q Consensus 341 ~-~~~rllLTgTPl 353 (759)
+ ....+++|||+-
T Consensus 202 ~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 202 NTSIQVVLLSATMP 215 (237)
T ss_dssp CTTCEEEEECSSCC
T ss_pred CCCCeEEEEEEecC
Confidence 5 445699999983
No 85
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=145.43 Aligned_cols=156 Identities=18% Similarity=0.185 Sum_probs=106.7
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHH-HHHHh------CCCCCCeEEEECCc-cHHHHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKG------NGLHGPYLVIAPLS-TLSNWVNEIS 258 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li-~~l~~------~~~~~~~LIV~P~s-ll~~W~~E~~ 258 (759)
...++|||.+++..++. +.++|+..+||+|||+.++..+ ..+.. .....++|||+|+. +..||.+++.
T Consensus 40 ~~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 115 (228)
T 3iuy_A 40 ILKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECS 115 (228)
T ss_dssp CCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHH
Confidence 34799999999998875 7899999999999999865443 33322 12445799999976 5688999999
Q ss_pred HhC-CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccCh--hhHHH
Q 004347 259 RFV-PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKNP--KCKLL 334 (759)
Q Consensus 259 ~~~-p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn~--~s~~~ 334 (759)
++. +...+..++|........... ...++|+|+|++.+...... .+...++++||+||||++.+. ...+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 189 (228)
T 3iuy_A 116 KYSYKGLKSICIYGGRNRNGQIEDI------SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIR 189 (228)
T ss_dssp HHCCTTCCEEEECC------CHHHH------HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHH
T ss_pred HhcccCceEEEEECCCChHHHHHHh------cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHH
Confidence 985 456677776655433222111 13579999999998765432 223345789999999998643 34455
Q ss_pred HHHhcCC-CCcEEEEecCC
Q 004347 335 KELKYIP-IGNKLLLTGTP 352 (759)
Q Consensus 335 ~~l~~l~-~~~rllLTgTP 352 (759)
..+..++ ....+++|||.
T Consensus 190 ~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 190 KILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHHHHSCSSCEEEEEESCC
T ss_pred HHHHhCCcCCeEEEEEeeC
Confidence 5566665 44568999996
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.54 E-value=8.5e-14 Score=142.74 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=107.6
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHH-HHHHHHhC-CCCCCeEEEECCc-cHHHHHHHHHHhCCC-
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIA-FLAHLKGN-GLHGPYLVIAPLS-TLSNWVNEISRFVPS- 263 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~-li~~l~~~-~~~~~~LIV~P~s-ll~~W~~E~~~~~p~- 263 (759)
..|+|||.+++..++. +.++++..+||+|||++++. ++..+... +...++|||+|+. +..||.+++.+++..
T Consensus 50 ~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT 125 (245)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 4699999999988875 78899999999999998544 44444332 2334799999976 568999999998764
Q ss_pred -ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHh---hhhcCccEEEEcCcccccC-----hhhHHH
Q 004347 264 -VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKY---LRHYNWKYLVVDEGHRLKN-----PKCKLL 334 (759)
Q Consensus 264 -~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~---l~~~~~~~lIvDEaH~ikn-----~~s~~~ 334 (759)
..+..++|..... ..........++|+|+|++.+...+... +...++++||+||||++.. ....+.
T Consensus 126 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~ 200 (245)
T 3dkp_A 126 GFRIHMIHKAAVAA-----KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 200 (245)
T ss_dssp CCCEECCCHHHHHH-----TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHH
T ss_pred CceEEEEecCccHH-----HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHH
Confidence 4444444433221 1122233457899999999997765332 3334678999999999854 233344
Q ss_pred HHHhcC--CCCcEEEEecCC
Q 004347 335 KELKYI--PIGNKLLLTGTP 352 (759)
Q Consensus 335 ~~l~~l--~~~~rllLTgTP 352 (759)
..+..+ ...+.+++|||+
T Consensus 201 ~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 201 SIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHHHCCCTTCEEEEEESSC
T ss_pred HHHHhcCCCCcEEEEEeccC
Confidence 444444 345679999998
No 87
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.53 E-value=5.7e-14 Score=145.68 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=109.9
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHH-HHHHHHhC----CCCCCeEEEECCc-cHHHHHHHHHHh
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIA-FLAHLKGN----GLHGPYLVIAPLS-TLSNWVNEISRF 260 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~-li~~l~~~----~~~~~~LIV~P~s-ll~~W~~E~~~~ 260 (759)
...|+|+|.+++..++. +.++|+..+||+|||+.++. ++..+... .....+|||+|+. +..||.+++.++
T Consensus 74 ~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 74 FTNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp CCBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 34699999999988876 78899999999999998544 44444432 1345799999975 568899999998
Q ss_pred CCC--ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccC--hhhHHH
Q 004347 261 VPS--VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKN--PKCKLL 334 (759)
Q Consensus 261 ~p~--~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn--~~s~~~ 334 (759)
... ..+..+.|............ ..++|+|+|++.+...+.. .+...++++|||||||++.. ....+.
T Consensus 150 ~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~ 223 (262)
T 3ly5_A 150 MTHHVHTYGLIMGGSNRSAEAQKLG------NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELK 223 (262)
T ss_dssp TTTCCSCEEEECSSSCHHHHHHHHH------HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHH
T ss_pred HhhcCceEEEEECCCCHHHHHHHhc------CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHH
Confidence 753 45556666544333222111 2478999999998776533 12334578999999999864 334455
Q ss_pred HHHhcCCC-CcEEEEecCCC
Q 004347 335 KELKYIPI-GNKLLLTGTPL 353 (759)
Q Consensus 335 ~~l~~l~~-~~rllLTgTPl 353 (759)
..+..++. ...+++|||+-
T Consensus 224 ~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 224 QIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp HHHHHSCSSSEEEEECSSCC
T ss_pred HHHHhCCCCCeEEEEEecCC
Confidence 55566644 45799999983
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.52 E-value=1.3e-13 Score=141.07 Aligned_cols=156 Identities=19% Similarity=0.189 Sum_probs=108.7
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhC-----CCCCCeEEEECCc-cHHHHHHHHHH
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGN-----GLHGPYLVIAPLS-TLSNWVNEISR 259 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~-----~~~~~~LIV~P~s-ll~~W~~E~~~ 259 (759)
...++|||.+++..++. |.++++..+||+|||+..+ .++..+... +....+|||||+. +..||.+.+.+
T Consensus 49 ~~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 124 (242)
T 3fe2_A 49 FTEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAE 124 (242)
T ss_dssp CCSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 34699999999998875 7899999999999999854 444444432 2345789999976 55788888877
Q ss_pred hCC--CceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH-hhhhcCccEEEEcCcccccC--hhhHHH
Q 004347 260 FVP--SVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK-YLRHYNWKYLVVDEGHRLKN--PKCKLL 334 (759)
Q Consensus 260 ~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~-~l~~~~~~~lIvDEaH~ikn--~~s~~~ 334 (759)
+.. +..+..++|............ ..++|+|+|++.+...+.. .+...++++||+||||++.. ....+.
T Consensus 125 ~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~ 198 (242)
T 3fe2_A 125 YCRACRLKSTCIYGGAPKGPQIRDLE------RGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 198 (242)
T ss_dssp HHHHTTCCEEEECTTSCHHHHHHHHH------HCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHH
T ss_pred HHhhcCceEEEEECCCChHHHHHHhc------CCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHH
Confidence 642 456666666544333222211 2578999999998776532 22334678999999999864 334445
Q ss_pred HHHhcCC-CCcEEEEecCC
Q 004347 335 KELKYIP-IGNKLLLTGTP 352 (759)
Q Consensus 335 ~~l~~l~-~~~rllLTgTP 352 (759)
..+..++ ....+++|||+
T Consensus 199 ~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 199 KIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp HHHTTSCSSCEEEEEESCC
T ss_pred HHHHhCCccceEEEEEeec
Confidence 5556664 44578999996
No 89
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.44 E-value=1.6e-11 Score=141.81 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=95.6
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH----HHHHHHHHHhC
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL----SNWVNEISRFV 261 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll----~~W~~E~~~~~ 261 (759)
.|-.++|.|..|+..++. |. |....||+|||+++...+....-.| ..++||||+..| .+|...+.+++
T Consensus 76 lG~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~G--~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 76 LGMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALTG--KGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp TCCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTTC--SCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred hCCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHhC--CCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 355889999999988763 44 8889999999998543332111222 479999999977 45888888887
Q ss_pred CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHH-HHHHHh-------hhhc---CccEEEEcCcccccChh
Q 004347 262 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVAL-SDARKY-------LRHY---NWKYLVVDEGHRLKNPK 330 (759)
Q Consensus 262 p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~-~~~~~~-------l~~~---~~~~lIvDEaH~ikn~~ 330 (759)
+ +++.+..|+...... +.. ...+|++.|+..+. ..++.. +... +..++||||+|++.-.
T Consensus 148 G-Lsv~~i~Gg~~~~~r--~~a------y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD- 217 (997)
T 2ipc_A 148 G-LSVGVIQHASTPAER--RKA------YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID- 217 (997)
T ss_dssp T-CCEEECCTTCCHHHH--HHH------HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS-
T ss_pred C-CeEEEEeCCCCHHHH--HHH------cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh-
Confidence 4 555555554332211 111 14689999999883 333332 2223 5789999999976421
Q ss_pred hHHHHHHhcCCCCcEEEEecCCCCCCHHHHHhh
Q 004347 331 CKLLKELKYIPIGNKLLLTGTPLQNNLAELWSL 363 (759)
Q Consensus 331 s~~~~~l~~l~~~~rllLTgTPl~n~~~el~sl 363 (759)
....-+++|| |.+.. ..+|..
T Consensus 218 ----------eartPLIISg-p~~~~-~~lY~~ 238 (997)
T 2ipc_A 218 ----------EARTPLIISG-PAEKA-TDLYYK 238 (997)
T ss_dssp ----------STTSCEEEEE-SCSSC-HHHHHH
T ss_pred ----------CCCCCeeeeC-CCccc-hHHHHH
Confidence 1223389999 87766 444443
No 90
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.40 E-value=1e-11 Score=142.05 Aligned_cols=81 Identities=10% Similarity=0.162 Sum_probs=49.9
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCC----CC
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTA----AD 603 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~----a~ 603 (759)
..++++|||+.+...++.+...|.. ++ ..+.|.. .+|.+++++|.. ...+ .|.+.|....+|||+++ ++
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~-~~~i-l~~V~~~~~~EGiD~~~~~~~~~ 454 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKT-GKYL-VMLVMRAKESEGVEFREKENLFE 454 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHT-SCCE-EEEEC---------------CEE
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhc-CCeE-EEEEecCceecceecCCCccccc
Confidence 3567899999999999988888764 33 3456654 368899999987 2331 22338899999999996 89
Q ss_pred EEEEeCCCCCcc
Q 004347 604 TCILYDSDWNPQ 615 (759)
Q Consensus 604 ~VI~~D~~wnp~ 615 (759)
.||+++.|+-+.
T Consensus 455 ~Vii~~lPf~~~ 466 (540)
T 2vl7_A 455 SLVLAGLPYPNV 466 (540)
T ss_dssp EEEEESCCCCCT
T ss_pred EEEEECCCCCCC
Confidence 999999986544
No 91
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=138.08 Aligned_cols=157 Identities=18% Similarity=0.162 Sum_probs=107.4
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHH-HHHHHHHhCCCCCCeEEEECCcc-HHHHHHHHHHhC--
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI-AFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRFV-- 261 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai-~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~-- 261 (759)
....++|+|..++..++. ..+.+.|+..+||+|||+..+ .++..+...+....+|||||+.. ..|+.+.+.++.
T Consensus 111 g~~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~ 188 (300)
T 3fmo_B 111 GFNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF 188 (300)
T ss_dssp TCCSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 345799999999988864 123789999999999999854 55555544444457999999775 467777776664
Q ss_pred -CCceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHH--hhhhcCccEEEEcCcccccC---hhhHHHH
Q 004347 262 -PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARK--YLRHYNWKYLVVDEGHRLKN---PKCKLLK 335 (759)
Q Consensus 262 -p~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~--~l~~~~~~~lIvDEaH~ikn---~~s~~~~ 335 (759)
+...+..+.|..... .......+|+|+|++.+...+.. .+...++++|||||||++.. .......
T Consensus 189 ~~~~~~~~~~~~~~~~---------~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~ 259 (300)
T 3fmo_B 189 YPELKLAYAVRGNKLE---------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 259 (300)
T ss_dssp STTCCEEEESTTCCCC---------TTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHH
T ss_pred CCCcEEEEEeCCccHh---------hhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHH
Confidence 566777776654221 11234678999999998766522 33334678999999999863 2233334
Q ss_pred HHhcCCC-CcEEEEecCCC
Q 004347 336 ELKYIPI-GNKLLLTGTPL 353 (759)
Q Consensus 336 ~l~~l~~-~~rllLTgTPl 353 (759)
.+..++. ...+++|||+-
T Consensus 260 i~~~~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 260 IQRMLPRNCQMLLFSATFE 278 (300)
T ss_dssp HHTTSCTTCEEEEEESCCC
T ss_pred HHHhCCCCCEEEEEeccCC
Confidence 4444443 45789999983
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.96 E-value=1.7e-09 Score=109.88 Aligned_cols=150 Identities=17% Similarity=0.104 Sum_probs=93.4
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHH-HHHHhCCC--CCCeEEEECCccH-HHHHHHHHHhCCC
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL-AHLKGNGL--HGPYLVIAPLSTL-SNWVNEISRFVPS 263 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li-~~l~~~~~--~~~~LIV~P~sll-~~W~~E~~~~~p~ 263 (759)
..++++|.+++..+.. +...++..++|+|||.+...++ ..+...+. ...+++++|...+ .+..+.+......
T Consensus 60 ~p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 60 LPVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp SGGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 3578999999998875 7889999999999997654443 33444332 3368899997755 4455566555421
Q ss_pred c--eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccc-cChhh---HHHHHH
Q 004347 264 V--SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRL-KNPKC---KLLKEL 337 (759)
Q Consensus 264 ~--~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~i-kn~~s---~~~~~l 337 (759)
. ..+.+..... ........+|+|+|++.+.+.+...+ .++++||+||||+. -+... .+...+
T Consensus 136 ~~~~~~g~~~~~~----------~~~~~~~~~Ivv~Tpg~l~~~l~~~l--~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 136 EPGKSCGYSVRFE----------SILPRPHASIMFCTVGVLLRKLEAGI--RGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp CTTSSEEEEETTE----------EECCCSSSEEEEEEHHHHHHHHHHCC--TTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred ccCceEEEeechh----------hccCCCCCeEEEECHHHHHHHHHhhh--cCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 1 1111110000 01112457899999999887765433 35689999999984 22221 122223
Q ss_pred hcCCCCcEEEEecCCC
Q 004347 338 KYIPIGNKLLLTGTPL 353 (759)
Q Consensus 338 ~~l~~~~rllLTgTPl 353 (759)
...+....+++|||+-
T Consensus 204 ~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 204 QAYPEVRIVLMSATID 219 (235)
T ss_dssp HHCTTSEEEEEECSSC
T ss_pred hhCCCCeEEEEecCCC
Confidence 3345566799999974
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.77 E-value=1.9e-08 Score=115.21 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=91.5
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCC--Cc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVP--SV 264 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~~ 264 (759)
..+||+|.+.+..+...+..+.++++...||+|||+..+..+.. ...+++|++|+. +..||.+++.++.. .+
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-----VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-----HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 36899999999887777778899999999999999986544433 235899999977 55789899987743 45
Q ss_pred eEEEEeCChhH--------------------------------HHHHHH--------hc-----CCCCCCCCCCEEEecH
Q 004347 265 SAIIYHGSKKE--------------------------------RDEIRR--------KH-----MPRAIGPKFPIVVTSY 299 (759)
Q Consensus 265 ~~~~~~g~~~~--------------------------------r~~~~~--------~~-----~~~~~~~~~~vvItty 299 (759)
++.++.|...- ...... .. ..+......+|||+||
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 66666553210 000000 00 0000113569999999
Q ss_pred HHHHHHHHH-hhh-hcCccEEEEcCcccccC
Q 004347 300 EVALSDARK-YLR-HYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 300 e~l~~~~~~-~l~-~~~~~~lIvDEaH~ikn 328 (759)
..+..+... .+. .....+|||||||++-+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 999877422 121 13557899999999976
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.11 E-value=2.7e-06 Score=98.38 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=59.4
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHH-HHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhC--CCc
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIA-FLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFV--PSV 264 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~-li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~--p~~ 264 (759)
++||+|.+.+.-+.....++.++++...||+|||+..+. ++.++... ..+++|++|+. +..|+.+++.++. ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 579999999987777777899999999999999998654 44444443 25899999977 4578888887753 245
Q ss_pred eEEEEeC
Q 004347 265 SAIIYHG 271 (759)
Q Consensus 265 ~~~~~~g 271 (759)
++.++.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 5555444
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.40 E-value=0.00068 Score=75.47 Aligned_cols=145 Identities=16% Similarity=0.104 Sum_probs=86.1
Q ss_pred cCCccchhHHHHHHHHHHHhhcCC-CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCc
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGL-NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSV 264 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~-~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~ 264 (759)
....|-+-|.+++..++.....+. ..+|-...|+|||..+..++.++...+. .++++++|+.....-..+.. ..
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~----~~ 96 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE-TGIILAAPTHAAKKILSKLS----GK 96 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSHHHHHHHHHHH----SS
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEecCcHHHHHHHHhhh----cc
Confidence 345799999999998876544444 6788888999999999999999888654 57999999876543333221 11
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCc
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGN 344 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~ 344 (759)
.+..+|. .+ ... .. .......+... ..-....+++|||||+|.+-. ..+...+..+....
T Consensus 97 ~~~T~h~------~~-~~~-~~-~~~~~~~~~~~---------~~~~~~~~~~iiiDE~~~~~~--~~~~~l~~~~~~~~ 156 (459)
T 3upu_A 97 EASTIHS------IL-KIN-PV-TYEENVLFEQK---------EVPDLAKCRVLICDEVSMYDR--KLFKILLSTIPPWC 156 (459)
T ss_dssp CEEEHHH------HH-TEE-EE-ECSSCEEEEEC---------SCCCCSSCSEEEESCGGGCCH--HHHHHHHHHSCTTC
T ss_pred chhhHHH------Hh-ccC-cc-cccccchhccc---------ccccccCCCEEEEECchhCCH--HHHHHHHHhccCCC
Confidence 1111110 00 000 00 00000001000 001123578999999998742 23333344455678
Q ss_pred EEEEecCCCCC
Q 004347 345 KLLLTGTPLQN 355 (759)
Q Consensus 345 rllLTgTPl~n 355 (759)
++++.|-|-|.
T Consensus 157 ~~~~vGD~~Ql 167 (459)
T 3upu_A 157 TIIGIGDNKQI 167 (459)
T ss_dssp EEEEEECTTSC
T ss_pred EEEEECCHHHc
Confidence 89999988773
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.39 E-value=0.00025 Score=82.65 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=55.5
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-HHHHHHHHHHhC
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRFV 261 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~ 261 (759)
...|-+.|.+||..++. ...-.|+.-+.|+|||.+.+.++.++...+ .++||++|+.. +.+....+....
T Consensus 187 ~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp STTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEcCchHHHHHHHHHHHhcC
Confidence 45789999999998874 222368888899999999999999988865 58999999764 677766676553
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.34 E-value=0.0011 Score=75.87 Aligned_cols=132 Identities=22% Similarity=0.235 Sum_probs=86.7
Q ss_pred CCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceE
Q 004347 187 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSA 266 (759)
Q Consensus 187 ~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~ 266 (759)
+..|.+.|..++..++. +...++.-..|+|||.++.+++..+...+ .++++++|+........+... ...
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~~g--~~Vl~~ApT~~Aa~~L~e~~~----~~a 256 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAESLG--LEVGLCAPTGKAARRLGEVTG----RTA 256 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHHT----SCE
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEecCcHHHHHHhHhhhc----ccH
Confidence 55788999999988863 56678889999999999888888777654 689999998877666555321 111
Q ss_pred EEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEE
Q 004347 267 IIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKL 346 (759)
Q Consensus 267 ~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rl 346 (759)
..++ . .+... + . .+. ...-...++++|||||||.+-. ..+...+..++...++
T Consensus 257 ~Tih-------~----ll~~~--~--~----~~~------~~~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~l 309 (574)
T 3e1s_A 257 STVH-------R----LLGYG--P--Q----GFR------HNHLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGARV 309 (574)
T ss_dssp EEHH-------H----HTTEE--T--T----EES------CSSSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEE
T ss_pred HHHH-------H----HHcCC--c--c----hhh------hhhcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEE
Confidence 1110 0 00000 0 0 000 0001223679999999999853 2444556667778899
Q ss_pred EEecCCCCC
Q 004347 347 LLTGTPLQN 355 (759)
Q Consensus 347 lLTgTPl~n 355 (759)
+|.|-|-|.
T Consensus 310 ilvGD~~QL 318 (574)
T 3e1s_A 310 LLVGDTDQL 318 (574)
T ss_dssp EEEECTTSC
T ss_pred EEEeccccc
Confidence 999999874
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.33 E-value=0.00068 Score=78.52 Aligned_cols=154 Identities=19% Similarity=0.323 Sum_probs=92.8
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhCCCceE
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVPSVSA 266 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~~~~ 266 (759)
..|-+.|..++..++. +...++.-..|+|||.++..++..+... ...++||++|+... .+....+.+.. ..+
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~~--~~~ 251 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQTG--LKV 251 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTTT--CCE
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhcC--CeE
Confidence 4688999999988763 4456888889999999998888887753 34689999998754 55555555432 233
Q ss_pred EEEeCChhH-----------HHHH---------HHhc-C----------------------CCCCCCCCCEEEecHHHHH
Q 004347 267 IIYHGSKKE-----------RDEI---------RRKH-M----------------------PRAIGPKFPIVVTSYEVAL 303 (759)
Q Consensus 267 ~~~~g~~~~-----------r~~~---------~~~~-~----------------------~~~~~~~~~vvIttye~l~ 303 (759)
+-+.+.... ...+ .... + ........+||++|...+.
T Consensus 252 ~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~ 331 (624)
T 2gk6_A 252 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 331 (624)
T ss_dssp EECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGG
T ss_pred EeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhc
Confidence 222221100 0000 0000 0 0000124567777755432
Q ss_pred HHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecCCCCC
Q 004347 304 SDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQN 355 (759)
Q Consensus 304 ~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTPl~n 355 (759)
. ..+....|++||||||..+..+.+ +. ..+....+++|-|=|.|-
T Consensus 332 ~---~~l~~~~fd~viIDEAsQ~~e~~~-li---~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 332 D---PRLAKMQFRSILIDESTQATEPEC-MV---PVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp C---GGGTTCCCSEEEETTGGGSCHHHH-HH---HHTTTBSEEEEEECTTSC
T ss_pred c---hhhhcCCCCEEEEecccccCcHHH-HH---HHHhcCCeEEEecChhcc
Confidence 1 235567899999999987765542 21 122345689999998764
No 99
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.17 E-value=0.0015 Score=75.37 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=83.3
Q ss_pred chhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC--CCCCCeEEEECCccHHHHHHH-HHHh---CCCc
Q 004347 191 KSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN--GLHGPYLVIAPLSTLSNWVNE-ISRF---VPSV 264 (759)
Q Consensus 191 rpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~--~~~~~~LIV~P~sll~~W~~E-~~~~---~p~~ 264 (759)
-+.|..++..++. +...++.-..|+|||.++..++..+... +...++++++|+........+ +..+ .+ +
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~-l 225 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP-L 225 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS-C
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCC-C
Confidence 5889999987763 6678899999999998887777777642 334589999998876554433 3222 11 0
Q ss_pred eEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCc
Q 004347 265 SAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGN 344 (759)
Q Consensus 265 ~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~ 344 (759)
...... ..+.....-..++-.+.....-. .......++++||||||+.+- ...+...+..++...
T Consensus 226 ~~~~~~------------~~~~~~~Tih~ll~~~~~~~~~~-~~~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~ 290 (608)
T 1w36_D 226 TDEQKK------------RIPEDASTLHRLLGAQPGSQRLR-HHAGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHA 290 (608)
T ss_dssp CSCCCC------------SCSCCCBTTTSCC------------CTTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTC
T ss_pred CHHHHh------------ccchhhhhhHhhhccCCCchHHH-hccCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCC
Confidence 000000 00000000001111111100000 011122367999999999664 334455667778889
Q ss_pred EEEEecCCCCCCH
Q 004347 345 KLLLTGTPLQNNL 357 (759)
Q Consensus 345 rllLTgTPl~n~~ 357 (759)
+++|.|-|-|--.
T Consensus 291 ~liLvGD~~QL~~ 303 (608)
T 1w36_D 291 RVIFLGDRDQLAS 303 (608)
T ss_dssp EEEEEECTTSGGG
T ss_pred EEEEEcchhhcCC
Confidence 9999999877544
No 100
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.14 E-value=0.0025 Score=63.35 Aligned_cols=114 Identities=20% Similarity=0.166 Sum_probs=65.9
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHH-HhCCCceEEEEeCChhHHHHHHHhcC
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS-RFVPSVSAIIYHGSKKERDEIRRKHM 284 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~-~~~p~~~~~~~~g~~~~r~~~~~~~~ 284 (759)
..|.-.++.-+||+|||..++.++..+...+ .+++++.|.--- + .. ..... .|
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~----r-~~~~i~sr------lG------------- 63 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDT----R-SIRNIQSR------TG------------- 63 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCG----G-GCSSCCCC------CC-------------
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCc----h-HHHHHHHh------cC-------------
Confidence 3344457889999999999999988887764 478888874310 1 00 00000 00
Q ss_pred CCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecC
Q 004347 285 PRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGT 351 (759)
Q Consensus 285 ~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgT 351 (759)
.....+.+.+...+...+...+....+++|||||+|.+...--...+.+... ...++|||-
T Consensus 64 ----~~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 64 ----TSLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp ----CSSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHT--TCEEEEECC
T ss_pred ----CCccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhC--CCeEEEEec
Confidence 0011233444444444433333344689999999999865432233333332 567899996
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.08 E-value=0.0012 Score=78.20 Aligned_cols=154 Identities=19% Similarity=0.305 Sum_probs=91.6
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhCCCceE
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVPSVSA 266 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~~~~ 266 (759)
..|-+.|..++..++. +.-.++.-..|+|||.++..++..+... ...++||++|+... .+-...+.... ..+
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~g--~~v 427 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQTG--LKV 427 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTTT--CCE
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHhC--cce
Confidence 4688999999988763 4456888899999999999888888763 34689999998754 44444454432 222
Q ss_pred EEEeCChhH-----------HH------------HHHHh--cCC------------------CCCCCCCCEEEecHHHHH
Q 004347 267 IIYHGSKKE-----------RD------------EIRRK--HMP------------------RAIGPKFPIVVTSYEVAL 303 (759)
Q Consensus 267 ~~~~g~~~~-----------r~------------~~~~~--~~~------------------~~~~~~~~vvIttye~l~ 303 (759)
+-+.+.... .. .+... ... .......+||++|...+.
T Consensus 428 vRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 507 (800)
T 2wjy_A 428 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 507 (800)
T ss_dssp EECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGGG
T ss_pred EeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhhC
Confidence 222211100 00 00000 000 000113466766654432
Q ss_pred HHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecCCCCC
Q 004347 304 SDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQN 355 (759)
Q Consensus 304 ~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTPl~n 355 (759)
. ..+....|++||||||..+..+.+ + +..+....+++|-|=|.|-
T Consensus 508 ~---~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 508 D---PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp C---TTTTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred C---hhhhcCCCCEEEEECCCCCCcHHH-H---HHHHhcCCeEEEecccccC
Confidence 1 234556899999999977754431 2 2223345789999988763
No 102
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0021 Score=76.34 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=91.7
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhCCCceE
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFVPSVSA 266 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~~~~ 266 (759)
..|-+.|..++..++. +.-.++.-..|+|||.++..++.++... ...++||++|+... .+....+.+.. ..+
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~g--~~i 431 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDLG--LKV 431 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHTT--CCE
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhhC--ccE
Confidence 4688999999988763 4446888899999999988888877652 23689999997754 55555566542 222
Q ss_pred EEEeCChh----------------------H------------------HHHHHHh--cCCCCCCCCCCEEEecHHHHHH
Q 004347 267 IIYHGSKK----------------------E------------------RDEIRRK--HMPRAIGPKFPIVVTSYEVALS 304 (759)
Q Consensus 267 ~~~~g~~~----------------------~------------------r~~~~~~--~~~~~~~~~~~vvIttye~l~~ 304 (759)
+-+.+... . ...+... ..........+||++|...+..
T Consensus 432 lR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~ 511 (802)
T 2xzl_A 432 VRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD 511 (802)
T ss_dssp EECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGC
T ss_pred EeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcCh
Confidence 22221100 0 0000000 0000001245677777654431
Q ss_pred HHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecCCCCC
Q 004347 305 DARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQN 355 (759)
Q Consensus 305 ~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTPl~n 355 (759)
..+.. .|++||||||..+..+. .+. ..+....+++|-|=|.|-
T Consensus 512 ---~~L~~-~fd~viIDEA~q~~e~~-~li---~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 512 ---KRLDT-KFRTVLIDESTQASEPE-CLI---PIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp ---TTCCS-CCSEEEETTGGGSCHHH-HHH---HHTTTBSEEEEEECTTSC
T ss_pred ---HHHhc-cCCEEEEECccccchHH-HHH---HHHhCCCEEEEEeCcccc
Confidence 22444 89999999998876443 122 223345789999998763
No 103
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.61 E-value=0.014 Score=67.80 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=48.4
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC--CCCCeEEEECCccH-HHHHHHHHHh
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG--LHGPYLVIAPLSTL-SNWVNEISRF 260 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~--~~~~~LIV~P~sll-~~W~~E~~~~ 260 (759)
.|-|.|.++|.. .....++-...|+|||.+.+.-+.++...+ ...++|+|+++... .+....+.+.
T Consensus 9 ~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 688999999962 244566677799999999999999988753 23579999997654 4444455554
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.32 E-value=0.028 Score=60.43 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=86.8
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHh---CCC
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRF---VPS 263 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~---~p~ 263 (759)
..|.|||...+..+.. .+-.++.-.=+.|||..+.+++.+.........+++++|+.-. ..+.+.+..+ .|.
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ 237 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChH
Confidence 3789999988776632 3446777779999999877666654444444578999996633 2233555544 332
Q ss_pred -ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHh-c--
Q 004347 264 -VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELK-Y-- 339 (759)
Q Consensus 264 -~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~-~-- 339 (759)
+...+...+.. .+ ...+...+.+.+-+ ...++..+.+++|+||+|.+++.. .++.++. .
T Consensus 238 ll~~~~~~~~~~--------~I--~f~nGs~i~~lsa~------~~slrG~~~~~viiDE~a~~~~~~-el~~al~~~ls 300 (385)
T 2o0j_A 238 FLQPGIVEWNKG--------SI--ELDNGSSIGAYASS------PDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVIS 300 (385)
T ss_dssp TTSCCEEEECSS--------EE--EETTSCEEEEEECS------HHHHHTSCCSEEEEESGGGSTTHH-HHHHHHHHHHH
T ss_pred hhhhhhccCCcc--------EE--EeCCCCEEEEEECC------CCCccCCCCCEEEechhhhcCCCH-HHHHHHHHHhh
Confidence 11100000000 00 00112223333221 134567788999999999998732 3333332 2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHhhh
Q 004347 340 IPIGNKLLLTGTPLQNNLAELWSLL 364 (759)
Q Consensus 340 l~~~~rllLTgTPl~n~~~el~sll 364 (759)
.....++++++||-..+ -+|.+.
T Consensus 301 ~~~~~kiiiiSTP~g~n--~fy~l~ 323 (385)
T 2o0j_A 301 SGRRSKIIITTTPNGLN--HFYDIW 323 (385)
T ss_dssp STTCCEEEEEECCCSSS--HHHHHH
T ss_pred cCCCCcEEEEeCCCCch--hHHHHH
Confidence 22457889999996553 444444
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.31 E-value=0.012 Score=56.60 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=28.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 247 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~ 247 (759)
-.++.-.||+|||..++.++..+...+ .+++++.|.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGK--KKVAVFKPK 40 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--CEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeec
Confidence 346788899999999988887776654 478888886
No 106
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.11 E-value=0.031 Score=54.77 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=28.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s 248 (759)
++.-+||+|||..++..+..+...+ .+++|+.|..
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g--~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAK--QHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEecc
Confidence 5788899999999999888777654 5899999843
No 107
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.01 E-value=0.06 Score=61.68 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=83.7
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH-HHHHHHHHHhC---CC
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL-SNWVNEISRFV---PS 263 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll-~~W~~E~~~~~---p~ 263 (759)
..|.|||...+..+. . .+..++.-.=|.|||..+.+++.+.....+...+++++|..-. ..+...+..++ |.
T Consensus 162 ~~l~p~Q~~i~~~l~---~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~ 237 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS---S-KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (592)
T ss_dssp CCCCHHHHHHHHHHH---H-CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCT
T ss_pred CcCCHHHHHHHHhhc---c-ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChH
Confidence 478999998777652 2 4456777789999998876666555554445579999996532 33445555543 32
Q ss_pred -ceEEEEeCChhHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhc-CC
Q 004347 264 -VSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKY-IP 341 (759)
Q Consensus 264 -~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~-l~ 341 (759)
+.......+.. .+ ...+...+...+-+ ...++..+.+++|+||+|.+++.. .++.++.. +.
T Consensus 238 ~~~~~~~~~~~~--------~i--~~~nGs~i~~~s~~------~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~ 300 (592)
T 3cpe_A 238 FLQPGIVEWNKG--------SI--ELDNGSSIGAYASS------PDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVIS 300 (592)
T ss_dssp TTSCCEEEECSS--------EE--EETTSCEEEEEECC------HHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHS
T ss_pred hhccccccCCcc--------EE--EecCCCEEEEEeCC------CCCccCCCcceEEEehhccCCchh-HHHHHHHHHhc
Confidence 11000000000 00 00112222222211 133456678999999999998743 34444332 22
Q ss_pred --CCcEEEEecCCCCC
Q 004347 342 --IGNKLLLTGTPLQN 355 (759)
Q Consensus 342 --~~~rllLTgTPl~n 355 (759)
...++++++||-..
T Consensus 301 ~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 301 SGRRSKIIITTTPNGL 316 (592)
T ss_dssp SSSCCEEEEEECCCTT
T ss_pred cCCCceEEEEeCCCCc
Confidence 35789999999554
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.93 E-value=0.017 Score=55.80 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=28.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 247 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~ 247 (759)
.++.-.||+|||..++.++..+...+ .+++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g--~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAK--QKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEec
Confidence 46778899999999998888877654 589999985
No 109
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.91 E-value=0.015 Score=60.58 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=27.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCC--CCCeEEEEC
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGL--HGPYLVIAP 246 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~--~~~~LIV~P 246 (759)
.+.+|.-+.|+|||..+-+++..+...+. .++++.+.+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 35789999999999999888888766443 335555544
No 110
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.88 E-value=0.045 Score=57.88 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=37.9
Q ss_pred cchhHHHHHHHHHHHhhcCCC---eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 190 LKSYQLKGVKWLISLWQNGLN---GILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~---~ILademGlGKTl~ai~li~~l~~~ 235 (759)
++|+|.+.+..+...+.++.- .++.-+.|+|||..+..++..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 579999999888877766542 5888999999999999999888754
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.25 E-value=0.11 Score=50.24 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=27.0
Q ss_pred cCccEEEEcCcccccCh-hhHHHHHHhcCCCCcEEEEecCCC
Q 004347 313 YNWKYLVVDEGHRLKNP-KCKLLKELKYIPIGNKLLLTGTPL 353 (759)
Q Consensus 313 ~~~~~lIvDEaH~ikn~-~s~~~~~l~~l~~~~rllLTgTPl 353 (759)
.+..+|||||+|.+... ...+...+.......++++|+...
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 35679999999998643 234555555556666777776543
No 112
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.17 E-value=0.085 Score=61.45 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=48.7
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC-C-CCCCeEEEECCccH-HHHHHHHHHhC
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-G-LHGPYLVIAPLSTL-SNWVNEISRFV 261 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~-~-~~~~~LIV~P~sll-~~W~~E~~~~~ 261 (759)
.|.|.|.++|... +...++....|+|||.+.+.-+.++... + ....+|+|+.+.-. ......+.+..
T Consensus 2 ~L~~~Q~~av~~~------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhCC------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 4779999998642 4556777889999999999888888764 3 34579999987654 44555566654
No 113
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.07 E-value=0.13 Score=50.88 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=28.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s 248 (759)
-++.-.||+|||..++..+...... ..+++|+-|..
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~--g~kvli~kp~~ 57 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAK 57 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEEEETT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEeecC
Confidence 3678889999999988887766654 36899999843
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.91 E-value=0.16 Score=53.12 Aligned_cols=39 Identities=15% Similarity=-0.075 Sum_probs=28.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST 249 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl 249 (759)
.+.+|.-+.|+|||..+-+++..+... ..+++.+.....
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~~ 76 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDF 76 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHHH
Confidence 467899999999999988888877665 346666654333
No 115
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.84 E-value=0.06 Score=61.99 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=63.7
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc--cccCCCCCC--CCCE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR--AGGLGINLT--AADT 604 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~--agg~GINL~--~a~~ 604 (759)
.++.+|||+.+-..++.+...|. .+... ...+++..+|..++++|. +.+. +|+++- ...+|||++ .+..
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~---vL~~v~~gsf~EGiD~~g~~l~~ 519 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHG---TIFAVSGGRLSEGINFPGNELEM 519 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCC---EEEEETTSCC--------CCCCE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCc---EEEEEecCceeccccCCCCceEE
Confidence 46678998888888888887776 23322 444455568999999999 4444 577764 889999997 6889
Q ss_pred EEEeCCCCCc-------------------ch----------hhHHhhhhhhcCCCCceEE
Q 004347 605 CILYDSDWNP-------------------QM----------DLQAMDRCHRIGQTKPVHV 635 (759)
Q Consensus 605 VI~~D~~wnp-------------------~~----------~~Qa~gR~~RiGQ~k~V~V 635 (759)
||+.-.|+-+ .. ..|++||+-|--+.+-|.+
T Consensus 520 viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 520 IILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp EEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEE
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEE
Confidence 9998877532 11 1488888888665555443
No 116
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.80 E-value=0.04 Score=60.09 Aligned_cols=108 Identities=15% Similarity=0.043 Sum_probs=65.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-HHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIG 289 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~ 289 (759)
.++.-..|+|||.....++. ..+.||++|+.. ...|.+.+.+... .
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~-------~~~~lVlTpT~~aa~~l~~kl~~~~~------------------------~-- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN-------FEEDLILVPGRQAAEMIRRRANASGI------------------------I-- 210 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC-------TTTCEEEESCHHHHHHHHHHHTTTSC------------------------C--
T ss_pred EEEEcCCCCCHHHHHHHHhc-------cCCeEEEeCCHHHHHHHHHHhhhcCc------------------------c--
Confidence 36777899999976655442 157899999764 4668777643210 0
Q ss_pred CCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecCCCCC
Q 004347 290 PKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQN 355 (759)
Q Consensus 290 ~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgTPl~n 355 (759)
.....-+.|++.+.... .......+++|||||+..+- ...+...+..++. .+++|.|=|-|-
T Consensus 211 ~~~~~~V~T~dsfL~~~-~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 211 VATKDNVRTVDSFLMNY-GKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp CCCTTTEEEHHHHHHTT-TSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred ccccceEEEeHHhhcCC-CCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcccc
Confidence 01123367777654321 11112237999999998663 2333333344444 899999998764
No 117
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.28 E-value=0.1 Score=55.89 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHHh-hc--CCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 191 KSYQLKGVKWLISLW-QN--GLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 191 rpyQ~~gv~~l~~~~-~~--~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
++.+.+.+...+..+ .. +.+.+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554333332 22 334789999999999998888877654
No 118
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.20 E-value=0.25 Score=54.22 Aligned_cols=40 Identities=18% Similarity=0.027 Sum_probs=29.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s 248 (759)
.+.+|.-+.|+|||..+-++...+....+..+++.+....
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 4678999999999999888887776654445666655433
No 119
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.06 E-value=0.24 Score=46.45 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=22.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445688999999999998888887765
No 120
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.99 E-value=0.11 Score=47.40 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=26.3
Q ss_pred ccEEEEcCcccccC-hhhHHHHHHhcCCCCcEEEEecCC
Q 004347 315 WKYLVVDEGHRLKN-PKCKLLKELKYIPIGNKLLLTGTP 352 (759)
Q Consensus 315 ~~~lIvDEaH~ikn-~~s~~~~~l~~l~~~~rllLTgTP 352 (759)
-..|++||.|.+.. ....+...+.......+++.|.+.
T Consensus 77 ~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 77 GGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 36899999999963 334566666666666677776664
No 121
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.96 E-value=0.28 Score=47.86 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=27.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 247 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~ 247 (759)
-++.-+||+|||...+..+..+...+ .+++|+.|.
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g--~kvli~kp~ 65 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAK--QKVVVFKPA 65 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC--CceEEEEec
Confidence 36788899999988887776666554 578999984
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.95 E-value=0.15 Score=49.03 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=27.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 247 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~ 247 (759)
-++.-.||+|||...+-.+......+ .+++++.|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~--~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ--YKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEccc
Confidence 37788999999987777777666654 689999885
No 123
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.71 E-value=0.71 Score=43.19 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
+.+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 355789999999999998888887765
No 124
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.45 E-value=0.37 Score=50.00 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=28.3
Q ss_pred cCccEEEEcCcccccC-hhhHHHHHHhcCCCCcEEEEecCCCC
Q 004347 313 YNWKYLVVDEGHRLKN-PKCKLLKELKYIPIGNKLLLTGTPLQ 354 (759)
Q Consensus 313 ~~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~~~rllLTgTPl~ 354 (759)
.+..+|||||+|++.. ....+.+.+.......++++|++...
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 3568999999999853 23345555666666667777766543
No 125
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.17 E-value=0.2 Score=52.37 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=28.4
Q ss_pred CccEEEEcCccccc-C-hhhHHHHHHhcCCCCcEEEEecCCCC
Q 004347 314 NWKYLVVDEGHRLK-N-PKCKLLKELKYIPIGNKLLLTGTPLQ 354 (759)
Q Consensus 314 ~~~~lIvDEaH~ik-n-~~s~~~~~l~~l~~~~rllLTgTPl~ 354 (759)
...+|||||+|.+. . ....+.+.+.......++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 56899999999995 2 23345555555556678888877654
No 126
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.16 E-value=0.67 Score=45.21 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=27.5
Q ss_pred chhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 191 KSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 191 rpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
++.....+...+..-..+...+|.-+.|+|||..+-.++..+..
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34444555444432111124689999999999988877776654
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.06 E-value=0.34 Score=51.58 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=22.5
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
.+.+.+|.-+.|+|||..+-.++..+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556789999999999998888777654
No 128
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.94 E-value=0.22 Score=52.10 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=24.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
..+.+|.-+.|+|||..+-+++..+ ..+++.|..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSS 84 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH-----TCEEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-----CCCEEEEch
Confidence 3457899999999999888877654 235555544
No 129
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.94 E-value=0.34 Score=50.34 Aligned_cols=38 Identities=3% Similarity=-0.117 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhcCC--CeEEEcCCCCcHHHHHHHHHHH
Q 004347 194 QLKGVKWLISLWQNGL--NGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 194 Q~~gv~~l~~~~~~~~--~~ILademGlGKTl~ai~li~~ 231 (759)
|.+.+..+.....++. ..|+.-+.|+|||..+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3344555554444444 4688999999999888887764
No 130
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.59 E-value=0.33 Score=51.61 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHHhhcCC----CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 191 KSYQLKGVKWLISLWQNGL----NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 191 rpyQ~~gv~~l~~~~~~~~----~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
.+.+...+.++......+. +.+|.-+.|+|||..+-+++..+.. ..|++.+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~---~~~~~~~~~ 105 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP---DTPFTAIAG 105 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS---SCCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc---cCCcccccc
Confidence 4566666666666555443 5789999999999999888877642 246655554
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.25 E-value=1.6 Score=40.97 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHHh-----hcCCCeEEEcCCCCcHHHHHHHHHHHHH
Q 004347 191 KSYQLKGVKWLISLW-----QNGLNGILADQMGLGKTIQTIAFLAHLK 233 (759)
Q Consensus 191 rpyQ~~gv~~l~~~~-----~~~~~~ILademGlGKTl~ai~li~~l~ 233 (759)
.+.|..++..+.... ..+.+.+|.-+.|+|||..+-+++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357888888877654 2456678889999999999888888776
No 132
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.24 E-value=0.22 Score=52.94 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=21.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
..+.+|.-+.|+|||..|-+++..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3567899999999999988887765
No 133
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.21 E-value=0.25 Score=52.02 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=27.9
Q ss_pred CccEEEEcCcccccC-hhhHHHHHHhcCCCCcEEEEecCCC
Q 004347 314 NWKYLVVDEGHRLKN-PKCKLLKELKYIPIGNKLLLTGTPL 353 (759)
Q Consensus 314 ~~~~lIvDEaH~ikn-~~s~~~~~l~~l~~~~rllLTgTPl 353 (759)
++.+||+||+|++.. ....+.+.+.......++++++++.
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 568999999999864 2345666666666666777766543
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.19 E-value=1.7 Score=46.19 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=21.0
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
+.+|.-+.|+|||..+-.++..+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 57899999999999888777766543
No 135
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.88 E-value=0.27 Score=48.38 Aligned_cols=49 Identities=16% Similarity=-0.115 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhh--cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 195 LKGVKWLISLWQ--NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 195 ~~gv~~l~~~~~--~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
...+..+..... .+.+.+|.-+.|+|||..+-+++..+...+ .+++.+.
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~--~~~~~~~ 87 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELE--RRSFYIP 87 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEE
Confidence 344455544333 356678999999999999888887776542 3444443
No 136
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.88 E-value=0.29 Score=49.93 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=20.2
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~ 231 (759)
.+.+.+|.-+.|+|||..+-+++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4566789999999999888777654
No 137
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.82 E-value=0.4 Score=51.56 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=33.7
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE 256 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E 256 (759)
..+|.+|.-++|+|||+.|=+++..+. .+++.|....++..|.-|
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~-----~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD-----CKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT-----CEEEEEEGGGGSCSSTTH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC-----CCceEEEhHHhhccccch
Confidence 357789999999999999888877642 367777777776665433
No 138
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.47 E-value=0.39 Score=49.77 Aligned_cols=41 Identities=10% Similarity=0.207 Sum_probs=27.3
Q ss_pred CccEEEEcCcccccChh-hHHHHHHhcCCCCcEEEEecCCCC
Q 004347 314 NWKYLVVDEGHRLKNPK-CKLLKELKYIPIGNKLLLTGTPLQ 354 (759)
Q Consensus 314 ~~~~lIvDEaH~ikn~~-s~~~~~l~~l~~~~rllLTgTPl~ 354 (759)
+..+|||||+|.+.... ..+.+.+.......++++++++..
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 36899999999986422 234555555566677777776533
No 139
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.43 E-value=1.3 Score=46.85 Aligned_cols=39 Identities=36% Similarity=0.384 Sum_probs=26.2
Q ss_pred CccEEEEcCcccccCh-hhHHHHHHhcCCCCcEEEEecCC
Q 004347 314 NWKYLVVDEGHRLKNP-KCKLLKELKYIPIGNKLLLTGTP 352 (759)
Q Consensus 314 ~~~~lIvDEaH~ikn~-~s~~~~~l~~l~~~~rllLTgTP 352 (759)
++.+|||||+|.+... ...+.+.+...+...+++++++-
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 4679999999998532 23455555555666667777653
No 140
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.09 E-value=0.16 Score=46.21 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=18.1
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAF 228 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~l 228 (759)
..+.+.+|.-++|+|||..|-++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 45678899999999999655443
No 141
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.90 E-value=1.2 Score=48.80 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=25.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN 252 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~ 252 (759)
..+.+|.-+.|+|||..+-+++..+ ...+++.|....++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~----~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA----NNSTFFSISSSDLVSK 207 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC----CSSEEEEECCC-----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc----CCCCEEEEeHHHHHhh
Confidence 3567899999999999888777664 1235555555544433
No 142
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.80 E-value=0.47 Score=47.87 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=26.7
Q ss_pred hhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC
Q 004347 205 WQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 247 (759)
Q Consensus 205 ~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~ 247 (759)
...+.+.+|.-++|+|||..+-++...+.. ...|++.|-..
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~~--~~~~~~~v~~~ 66 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCA 66 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTSTT--TTSCEEEEEGG
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcCc--cCCCeEEEecC
Confidence 355678899999999999877665544322 12455555433
No 143
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.75 E-value=0.3 Score=53.73 Aligned_cols=126 Identities=11% Similarity=0.088 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHh---CCCceEEEEeCC-
Q 004347 197 GVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRF---VPSVSAIIYHGS- 272 (759)
Q Consensus 197 gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~---~p~~~~~~~~g~- 272 (759)
++..++.-+..|.-.+|+..+|+|||.-++.++...... ...|++++..-....++...+... ++.... ..|.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l--~~g~l 265 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRV--RLGQL 265 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTC--CGGGC
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHH--hCCCC
Confidence 355565445556667999999999999998888877653 235899998866556655544221 111111 0111
Q ss_pred -hhHHHHHHHhcCCCCCCCCCCEEEe-----cHHHHHHHHHHhhhhcCccEEEEcCcccccC
Q 004347 273 -KKERDEIRRKHMPRAIGPKFPIVVT-----SYEVALSDARKYLRHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 273 -~~~r~~~~~~~~~~~~~~~~~vvIt-----tye~l~~~~~~~l~~~~~~~lIvDEaH~ikn 328 (759)
..+...+.... ... ...++.|. |...+...++.+....+.++||||..+.+..
T Consensus 266 ~~~~~~~~~~a~--~~l-~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 266 TDRDFSRLVDVA--SRL-SEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp CHHHHHHHHHHH--HHH-HTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred CHHHHHHHHHHH--HHH-hcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 11111111000 000 01234442 4555655555555567899999999998864
No 144
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.75 E-value=1.4 Score=45.13 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
+.+.+|.-++|+|||..+-+++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999888777665
No 145
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.70 E-value=0.31 Score=53.75 Aligned_cols=127 Identities=10% Similarity=0.080 Sum_probs=69.8
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHH--hCCCceEEEEeCC--
Q 004347 197 GVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR--FVPSVSAIIYHGS-- 272 (759)
Q Consensus 197 gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~--~~p~~~~~~~~g~-- 272 (759)
++..++.-+..|.-.+|+...|+|||.-++.++..+.... ..+++++.......++...+.. ..-...-+ ..|.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l-~~g~l~ 269 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEMSAQQLVMRMLCAEGNINAQNL-RTGKLT 269 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSSCHHHHHHHHHHHHHTCCHHHH-HTSCCC
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCCHHHHHHHHHHHHcCCCHHHH-hcCCCC
Confidence 4666665456666679999999999999988888776521 2489999876555554444321 11000000 0111
Q ss_pred hhHHHHHHHhcCCCCCCCCCCEEEe-----cHHHHHHHHHHhhhhcCccEEEEcCcccccC
Q 004347 273 KKERDEIRRKHMPRAIGPKFPIVVT-----SYEVALSDARKYLRHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 273 ~~~r~~~~~~~~~~~~~~~~~vvIt-----tye~l~~~~~~~l~~~~~~~lIvDEaH~ikn 328 (759)
......+.... ... ...++.+. |.+.+...++......+.++||||+.+.+..
T Consensus 270 ~~~~~~~~~a~--~~l-~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 270 PEDWGKLTMAM--GSL-SNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHH--HHH-HSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHH--HHH-hcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 11111110000 000 11234442 4555555555555566889999999999863
No 146
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.36 E-value=2 Score=46.04 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=26.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLS 251 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~ 251 (759)
..+.+|.-+.|+|||..+-+++..+ ..+++.|.+..+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES-----NATFFNISAASLTS 186 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEEECSCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh-----cCcEEEeeHHHhhc
Confidence 4577999999999998887775542 24566665554443
No 147
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.35 E-value=0.28 Score=51.35 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=25.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s 248 (759)
..+.+|.-+.|+|||..+-+++..+. ..+++.|....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~~~ 81 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSSD 81 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEECCS
T ss_pred CceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEhHH
Confidence 35678999999999998888776641 23455555443
No 148
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.17 E-value=1.5 Score=45.54 Aligned_cols=45 Identities=4% Similarity=-0.122 Sum_probs=30.9
Q ss_pred chhHHHHHH-HHHHHh--hcCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 191 KSYQLKGVK-WLISLW--QNGLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 191 rpyQ~~gv~-~l~~~~--~~~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
|+-|...+. ++.... ..+.+.+|.-.+|+|||.++-.++..+...
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555554 333332 234456899999999999999999888753
No 149
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.98 E-value=0.23 Score=52.38 Aligned_cols=127 Identities=10% Similarity=0.043 Sum_probs=69.6
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCC--h
Q 004347 197 GVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGS--K 273 (759)
Q Consensus 197 gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~--~ 273 (759)
.+..++.-+..|.-.+|+..+|.|||.-++.++..+... ..++++++.-....+....+......+..- +..|. .
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~ 112 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDD 112 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCH
Confidence 355555445556667999999999999998888877663 468999988665555444432211010000 00111 1
Q ss_pred hHHHHHHHhcCCCCCCCCCCEEEe-----cHHHHHHHHHHhhhhc-CccEEEEcCcccccC
Q 004347 274 KERDEIRRKHMPRAIGPKFPIVVT-----SYEVALSDARKYLRHY-NWKYLVVDEGHRLKN 328 (759)
Q Consensus 274 ~~r~~~~~~~~~~~~~~~~~vvIt-----tye~l~~~~~~~l~~~-~~~~lIvDEaH~ikn 328 (759)
.+...+.... . .....++.|. |...+...++.+.... +.++||||-.+.+..
T Consensus 113 ~e~~~l~~a~--~-~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 113 DQWENLAKCF--D-HLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHHHHHH--H-HHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred HHHHHHHHHH--H-HHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 1111111000 0 0001233332 3455555554555555 789999999999875
No 150
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.85 E-value=1.2 Score=44.35 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=25.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s 248 (759)
..+.+|.-+.|+|||..+-+++..+ ..+++.+....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~-----~~~~~~~~~~~ 74 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA-----QVPFLAMAGAE 74 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-----TCCEEEEETTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEechHH
Confidence 3456899999999999888777654 23555555443
No 151
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.67 E-value=0.94 Score=47.56 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCC--CeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 195 LKGVKWLISLWQNGL--NGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 195 ~~gv~~l~~~~~~~~--~~ILademGlGKTl~ai~li~~l~~ 234 (759)
...+..+......|. +.+|.-+.|+|||..+-+++..+..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 334444443334443 3789999999999999888887754
No 152
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.61 E-value=0.51 Score=48.62 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=25.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s 248 (759)
.+.+|.-++|+|||..+-+++..+ ..+++.|....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~~~~ 71 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGE 71 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH-----TCCCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeHHH
Confidence 456788999999999988888776 23666665433
No 153
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.39 E-value=1.4 Score=45.60 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST 249 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl 249 (759)
..+.+.+|.-++|+|||..|-++...... ..+|++.|-...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~--~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSAR--SDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSC--SSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcc--cCCCeEEEeCCCC
Confidence 45677899999999999877666543322 2357766644433
No 154
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.30 E-value=0.23 Score=51.44 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~ 234 (759)
+.+|.-+.|+|||..+-+++..+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcC
Confidence 4799999999999998888877754
No 155
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.45 E-value=2.2 Score=44.73 Aligned_cols=49 Identities=14% Similarity=0.314 Sum_probs=31.4
Q ss_pred CccEEEEcCcccccCh-hhHHHHHHhcCCCCcEEEEecCCCCCCHHHHHh
Q 004347 314 NWKYLVVDEGHRLKNP-KCKLLKELKYIPIGNKLLLTGTPLQNNLAELWS 362 (759)
Q Consensus 314 ~~~~lIvDEaH~ikn~-~s~~~~~l~~l~~~~rllLTgTPl~n~~~el~s 362 (759)
++.++|+||+|.+-.. ...+.+.+.......+++++++-...-+..+.+
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~s 183 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHT
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHh
Confidence 5789999999996432 234666666666666777776654443333433
No 156
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.39 E-value=1.3 Score=47.17 Aligned_cols=102 Identities=18% Similarity=0.117 Sum_probs=63.2
Q ss_pred HHHHHHH--HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCc-eEEEEeCCh
Q 004347 197 GVKWLIS--LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSV-SAIIYHGSK 273 (759)
Q Consensus 197 gv~~l~~--~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~-~~~~~~g~~ 273 (759)
++..++. -+..+.-.+|+-+.|+|||..++.++......+ +++++|.......+|. ..++.-+. ++.++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~~--a~~~g~d~~~l~i~~--- 133 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPVY--ARALGVNTDELLVSQ--- 133 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHH--HHHTTCCGGGCEEEC---
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHHH--HHHcCCCHHHceeec---
Confidence 4555553 234455568899999999999999988876643 5889988877666663 22221111 111110
Q ss_pred hHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 274 KERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 274 ~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
..+.+.+...+...+.....++||||....+.
T Consensus 134 ----------------------~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 134 ----------------------PDNGEQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp ----------------------CSSHHHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred ----------------------CCcHHHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 01344444444445556678999999998775
No 157
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.32 E-value=0.82 Score=48.45 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=22.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
+...+|.-+.|+|||..+-.++..+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4567899999999999888877776553
No 158
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.03 E-value=0.85 Score=48.38 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=25.1
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECC
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 247 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~ 247 (759)
...+.+|.-+.|+|||..+-+++..+ ..+++.|...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~i~~~ 151 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS-----GATFFSISAS 151 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT-----TCEEEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc-----CCeEEEEehH
Confidence 35567899999999999887776553 2355555443
No 159
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.96 E-value=1.7 Score=41.78 Aligned_cols=137 Identities=17% Similarity=0.132 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc-cHHHHHHHHHHhCCCceEEEEeC----ChhHHHHHHHh
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS-TLSNWVNEISRFVPSVSAIIYHG----SKKERDEIRRK 282 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~~~~~~g----~~~~r~~~~~~ 282 (759)
....++.-..|-|||..|+++.......| .+++|+-=.. ....=...+..-++ +.+..+.- ....+..-.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G--~rV~~vQF~Kg~~~~gE~~~l~~L~-v~~~~~g~gf~~~~~~~~~~~-- 102 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG--KNVGVVQFIKGTWPNGERNLLEPHG-VEFQVMATGFTWETQNREADT-- 102 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT--CCEEEEESSCCSSCCHHHHHHGGGT-CEEEECCTTCCCCGGGHHHHH--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCCCCccHHHHHHhCC-cEEEEcccccccCCCCcHHHH--
Confidence 44678888899999999999888777665 5888884311 11111111211122 22221110 000000000
Q ss_pred cCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCccccc----ChhhHHHHHHhcCCCCcEEEEecCCCCCCHH
Q 004347 283 HMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK----NPKCKLLKELKYIPIGNKLLLTGTPLQNNLA 358 (759)
Q Consensus 283 ~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ik----n~~s~~~~~l~~l~~~~rllLTgTPl~n~~~ 358 (759)
.............+..-.+++||+||.-... -+...+...+..-+...-++|||-- -+.
T Consensus 103 --------------~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~---ap~ 165 (196)
T 1g5t_A 103 --------------AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRG---CHR 165 (196)
T ss_dssp --------------HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSS---CCH
T ss_pred --------------HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCC---CcH
Confidence 0001112222345666689999999995431 1334567777776777789999954 444
Q ss_pred HHHhhhhh
Q 004347 359 ELWSLLHF 366 (759)
Q Consensus 359 el~sll~f 366 (759)
+|..+-++
T Consensus 166 ~l~e~AD~ 173 (196)
T 1g5t_A 166 DILDLADT 173 (196)
T ss_dssp HHHHHCSE
T ss_pred HHHHhCcc
Confidence 54444444
No 160
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.50 E-value=1 Score=49.22 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=31.5
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWV 254 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~ 254 (759)
..+|.||.-+.|+|||+.|-+++..+. .+++.|....++..|.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~-----~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD-----ATFIRVIGSELVQKYV 284 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGGCCCSS
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC-----CCeEEEEhHHhhcccC
Confidence 456778999999999999888877653 3677777766655443
No 161
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.64 E-value=3.5 Score=44.86 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=26.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
.+++-..|+|||.++..++.++...| .++++|+-
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G--~kVllv~~ 136 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRG--YKVGVVCS 136 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEEC
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 46777799999999999998888754 46666663
No 162
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.63 E-value=0.43 Score=47.35 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=37.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFV 261 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 261 (759)
|.-.+++.++|+|||.-++.++...... ...++++++-.....+....+..+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~~~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEERARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSCHHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccCCHHHHHHHHHHcC
Confidence 4456999999999999988887654332 1258888887666666666665543
No 163
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.62 E-value=1.1 Score=45.81 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=20.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
+.+.+|.-+.|+|||..+-+++..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5667899999999998887776543
No 164
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.60 E-value=3.6 Score=40.36 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=37.2
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 259 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~ 259 (759)
.|.-.+|+-+.|+|||..++.++..+... .++++++.-.....+....+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCCHHHHHHHHHH
Confidence 34556888899999999988888777654 3688888876655555555543
No 165
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.58 E-value=2.8 Score=43.54 Aligned_cols=60 Identities=8% Similarity=0.030 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHH
Q 004347 197 GVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 258 (759)
Q Consensus 197 gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~ 258 (759)
++..++.-+..|.-.+|+..+|+|||.-++.++......+ .++++++.-....+....+.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHH
Confidence 4555554455566679999999999999988887776654 68999987665555555443
No 166
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.38 E-value=3.7 Score=44.81 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEE-EEeCC--
Q 004347 196 KGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAI-IYHGS-- 272 (759)
Q Consensus 196 ~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~-~~~g~-- 272 (759)
.++..++.-+..|.-.||+..+|.|||.-++.++...... ..++++++.-.-..++...+.....++... +..|.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~ 262 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRD 262 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGG
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCC
Confidence 3466666545566667999999999999999988887765 358999987554444444432221111000 00110
Q ss_pred --hhHHHHHHHhcCCCCCCCCCCEEE-----ecHHHHHHHHHHhhhhcCcc--EEEEcCcccccC
Q 004347 273 --KKERDEIRRKHMPRAIGPKFPIVV-----TSYEVALSDARKYLRHYNWK--YLVVDEGHRLKN 328 (759)
Q Consensus 273 --~~~r~~~~~~~~~~~~~~~~~vvI-----ttye~l~~~~~~~l~~~~~~--~lIvDEaH~ikn 328 (759)
..+...+.... ... ...++.| .|.+.+...++......+.+ +||||=.+.+..
T Consensus 263 l~~~~~~~l~~a~--~~l-~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~ 324 (444)
T 3bgw_A 263 FASEDWGKLSMAI--GEI-SNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEP 324 (444)
T ss_dssp TCCSCHHHHHHHH--HHH-HTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBC
T ss_pred CCHHHHHHHHHHH--HHH-hcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccC
Confidence 00000000000 000 0224444 25566666655555566889 999999988763
No 167
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.32 E-value=5 Score=38.76 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=57.3
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCc------eEEEEeCChhHHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSV------SAIIYHGSKKERDEI 279 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~------~~~~~~g~~~~r~~~ 279 (759)
..|...+|.-+.|+|||..+..++..+... .++++++.......+....+..+.... ...++........
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 96 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-- 96 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccC--
Confidence 345556788999999998888777666543 357888776544444333333321110 1111111110000
Q ss_pred HHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCcc--EEEEcCccccc
Q 004347 280 RRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWK--YLVVDEGHRLK 327 (759)
Q Consensus 280 ~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~--~lIvDEaH~ik 327 (759)
...... .. +.+.+...+...+...+++ +||+||.+.+.
T Consensus 97 -----~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 97 -----DQWSLV--NL---TPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp -----CTTBCS--SC---CHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred -----ceeeec--CC---CHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 000000 01 4555544444455556788 99999999764
No 168
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.24 E-value=1.1 Score=48.45 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=31.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWV 254 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~ 254 (759)
..|.||.-+.|+|||+.|-+++..+. .+++.|....++..|.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~-----~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS-----ATFLRIVGSELIQKYL 257 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT-----CEEEEEESGGGCCSSS
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC-----CCEEEEEHHHhhhccC
Confidence 46779999999999999888877653 3677777766655553
No 169
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=86.19 E-value=2.7 Score=47.92 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC------------CCCCeEEEECCccHHH
Q 004347 198 VKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG------------LHGPYLVIAPLSTLSN 252 (759)
Q Consensus 198 v~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~------------~~~~~LIV~P~sll~~ 252 (759)
+..+......+...+|.-+.|+|||..+-+++..+.... ...|.+.++|.....+
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 333333346678899999999999988877766543221 2256677777665444
No 170
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.15 E-value=1.5 Score=45.18 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=20.7
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l 232 (759)
.+.+.+|.-+.|+|||..+-+++..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45567899999999999887776653
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.08 E-value=1.8 Score=46.39 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=28.5
Q ss_pred chhHHHHHHHHH-HHhh-----cCCCeEE--EcCCCCcHHHHHHHHHHHHHh
Q 004347 191 KSYQLKGVKWLI-SLWQ-----NGLNGIL--ADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 191 rpyQ~~gv~~l~-~~~~-----~~~~~IL--ademGlGKTl~ai~li~~l~~ 234 (759)
|..+++.+.-++ .... .+...+| .-+.|+|||..+-.++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 566666665444 3322 2234566 789999999988877776654
No 172
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.29 E-value=1.1 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.125 Sum_probs=18.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 004347 210 NGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l 232 (759)
+.||.-+.|+|||..+-++...+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 57999999999998877666543
No 173
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.12 E-value=2.9 Score=45.37 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=25.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
.+++-..|+|||.++..++.++...| +++++++
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~ 132 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVA 132 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEe
Confidence 46677799999999998888887754 4665555
No 174
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.11 E-value=0.72 Score=50.25 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=31.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWV 254 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~ 254 (759)
.+|.+|.-++|+|||+.|-+++..+. .+++.|....++..|.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~-----~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG-----ANFIFSPASGIVDKYI 256 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGTCCSSS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehhhhccccc
Confidence 46778999999999999888877653 3677776666655443
No 175
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.03 E-value=2.5 Score=44.63 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=38.3
Q ss_pred HHHHHHH--HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHH
Q 004347 197 GVKWLIS--LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 253 (759)
Q Consensus 197 gv~~l~~--~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W 253 (759)
++..++. -+..|.-.+|+-+.|+|||..++.++..+...+ ++++++.-.....++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHH
Confidence 4555553 233445568899999999999999888776643 678888876555444
No 176
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=84.82 E-value=3.1 Score=48.94 Aligned_cols=97 Identities=7% Similarity=0.048 Sum_probs=68.4
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHH----HHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEY----YFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFL 587 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~----~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 587 (759)
.|||-.+..-.+-.....|.+++|.+.....+..+.. ++...|+++..++|+++..+|...+....++ .+.|++
T Consensus 399 GSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g--~~~IvV 476 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG--QIDVVI 476 (780)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS--CCCEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC--CCCEEE
Confidence 4788766555444444568899999998776554444 4444489999999999999999999998874 344544
Q ss_pred EecccccCCCCCCCCCEEEEeCC
Q 004347 588 LSTRAGGLGINLTAADTCILYDS 610 (759)
Q Consensus 588 lsT~agg~GINL~~a~~VI~~D~ 610 (759)
.+.......+++...+.||+=+.
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEESC
T ss_pred ECHHHHhhhhhccCCceEEeccc
Confidence 44444455677888888877443
No 177
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.79 E-value=0.62 Score=50.71 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=31.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWV 254 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~ 254 (759)
.+|.+|.-++|+|||+.|=+++..+. .+++.|....++..|.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~-----~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN-----ATFLKLAAPQLVQMYI 256 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGGCSSCS
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC-----CCEEEEehhhhhhccc
Confidence 56778999999999999888877652 3677777766655553
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.69 E-value=3.1 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l 232 (759)
...+|.-+.|+|||..+-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999888887765
No 179
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.55 E-value=8.9 Score=39.32 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=20.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
..+.+|.-+.|+|||..+-++...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3678999999999998887776654
No 180
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.13 E-value=1.7 Score=44.69 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=25.0
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
+.+|.-+.|+|||..+-++...+... .++++.+-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEee
Confidence 56899999999999988887776543 24555553
No 181
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.43 E-value=3.3 Score=43.82 Aligned_cols=102 Identities=17% Similarity=0.091 Sum_probs=59.4
Q ss_pred HHHHHHH--HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCc-eEEEEeCCh
Q 004347 197 GVKWLIS--LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSV-SAIIYHGSK 273 (759)
Q Consensus 197 gv~~l~~--~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~-~~~~~~g~~ 273 (759)
++..++. -+..+.-.+|+-+.|+|||..++.++..+...+ +++++|.......+-. ..+|.-.. ++.++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~~--a~~~g~~~~~l~i~~--- 122 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY--ARKLGVDIDNLLCSQ--- 122 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHH--HHHTTCCGGGCEEEC---
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHHH--HHHcCCChhheeeeC---
Confidence 3445542 234455678999999999999999988877653 5788888754433211 23332111 011110
Q ss_pred hHHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 274 KERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 274 ~~r~~~~~~~~~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
..+.+.+...+..+.....+++||||....+.
T Consensus 123 ----------------------~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 123 ----------------------PDTGEQALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp ----------------------CSSHHHHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred ----------------------CCCHHHHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 01233333333334455678999999988765
No 182
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=83.37 E-value=0.8 Score=50.85 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=19.8
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~ 231 (759)
...+.+|.-+.|+|||..+-++...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH
Confidence 3456799999999999988776554
No 183
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=83.37 E-value=2.6 Score=40.59 Aligned_cols=56 Identities=11% Similarity=0.005 Sum_probs=34.7
Q ss_pred HHHHHHH-HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc--cHHHHHHHH
Q 004347 197 GVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS--TLSNWVNEI 257 (759)
Q Consensus 197 gv~~l~~-~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s--ll~~W~~E~ 257 (759)
++..++. -+..|.-.+|+-+.|+|||..+..++. . ..++++++.-.. ....|..-.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~~~ 66 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQMA 66 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHHHH
Confidence 3444442 233455568899999999988887776 2 235777777544 344555433
No 184
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=82.85 E-value=4.6 Score=47.34 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=23.2
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
.+.+.+|.-+.|+|||..+-+++..+...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 34567999999999999988888776553
No 185
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=81.52 E-value=3.8 Score=42.44 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHH
Q 004347 191 KSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 191 rpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~ 231 (759)
|+.++..+..++ ..+...+|.-+.|.|||..+-.++..
T Consensus 17 R~~el~~L~~~l---~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 17 REEESRKLEESL---ENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CHHHHHHHHHHH---HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH---hcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 455555554443 33566789999999999776655543
No 186
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=81.41 E-value=2.9 Score=46.19 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=41.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCcc-HHHHHHHHHHhCCCceEEEE
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLST-LSNWVNEISRFVPSVSAIIY 269 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~~~~~ 269 (759)
+....|.--+|+|||+.+..++.. ..+|+|||||... ..+|..++..|+|.. +..|
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~-----~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~f 70 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAER-----HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNL 70 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHH-----SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEEC
T ss_pred CCeEEEeCCCchHHHHHHHHHHHH-----hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEE
Confidence 334577788999999987766643 2469999999765 578999999998864 4433
No 187
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=81.19 E-value=2.6 Score=42.51 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=19.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHH
Q 004347 209 LNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~ 231 (759)
.+.+|.-++|+|||..|-+++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45689999999999988877765
No 188
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.01 E-value=3.9 Score=48.76 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=22.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 446799999999999998888887755
No 189
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.87 E-value=1.6 Score=47.34 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=30.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 253 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W 253 (759)
.+|.+|.-++|+|||+.|=+++..+. .+++.|....++..|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~-----~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK-----AAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT-----CEEEEEEGGGTCCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEecchhhccc
Confidence 45678999999999999888877652 366776666555444
No 190
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=80.76 E-value=3.2 Score=39.51 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
.+.+|.-++|+|||..+-+++..+...+ .+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~--~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN--VSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEE
Confidence 5678999999999999988888776543 4555443
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=80.69 E-value=6.2 Score=43.43 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
..+.+|.-++|+|||..+-+++..+ ..|++.+..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~-----~~~f~~is~ 82 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA-----NVPFFHISG 82 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-----CCCeeeCCH
Confidence 3567899999999998877776643 235555544
No 192
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.49 E-value=20 Score=36.94 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=18.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHH
Q 004347 209 LNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~ 231 (759)
.+.+|.-+.|+|||..+-++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999887777544
No 193
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=79.35 E-value=3.4 Score=37.58 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=23.0
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
.+...+|.-+.|+|||..+-+++..+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 63 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA 63 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46667889999999998888877766543
No 194
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=78.62 E-value=9.3 Score=42.90 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=59.8
Q ss_pred HHHHHHHH-hhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeC-CCCHHHHHHHHHHhhccCCCceEEEEec--cccc
Q 004347 519 LDRLLARL-FARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDG-SVRLDERKRQIQDFNDVNSSYRIFLLST--RAGG 594 (759)
Q Consensus 519 L~~lL~~l-~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G-~~~~~~R~~~i~~F~~~~~~~~v~LlsT--~agg 594 (759)
+.+.+..+ ...++.+|||..+-..++.+... .+.++. +.| +++ +.++++.|.... + .+|+++ ....
T Consensus 381 l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~-~q~~~~~---~~~~~~~~~~~~-~--~vl~~v~gg~~~ 450 (551)
T 3crv_A 381 YADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKY-VESEDSS---VEDLYSAISANN-K--VLIGSVGKGKLA 450 (551)
T ss_dssp HHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEE-ECCSSCC---HHHHHHHTTSSS-S--CEEEEESSCCSC
T ss_pred HHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEE-EcCCCCC---HHHHHHHHHhcC-C--eEEEEEecceec
Confidence 33334333 34566888888888887777653 344443 334 334 456788886422 3 256666 6899
Q ss_pred CCCCCC-----CCCEEEEeCCCCCcchhhHHhhhh
Q 004347 595 LGINLT-----AADTCILYDSDWNPQMDLQAMDRC 624 (759)
Q Consensus 595 ~GINL~-----~a~~VI~~D~~wnp~~~~Qa~gR~ 624 (759)
+|||++ .+..||+.-.|+-+. +-....|.
T Consensus 451 EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~ 484 (551)
T 3crv_A 451 EGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILA 484 (551)
T ss_dssp CSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHH
T ss_pred ccccccccCCcceeEEEEEcCCCCCC-CHHHHHHH
Confidence 999999 588999988887544 43334444
No 195
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=77.75 E-value=2.9 Score=48.82 Aligned_cols=66 Identities=17% Similarity=0.076 Sum_probs=47.4
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC-C-CCCCeEEEECCccHH-HHHHHHHHh
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-G-LHGPYLVIAPLSTLS-NWVNEISRF 260 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~-~-~~~~~LIV~P~sll~-~W~~E~~~~ 260 (759)
.|-|.|.++|.. .....++-...|+|||.+.+.-+.++... + ....+|+|+.+.... ...+.+.+.
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 588999999864 24456677779999999999988888874 3 235689999976443 344444443
No 196
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=77.20 E-value=7.8 Score=41.47 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=65.9
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHh---cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEE
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNE---KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLL 588 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Ll 588 (759)
.|||-.+..-.+......+.++||.++....+..+...+.. .|+++..++|+++..+|...+..+..++ ..|++.
T Consensus 46 GsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Iiv~ 123 (414)
T 3oiy_A 46 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVF 123 (414)
T ss_dssp SSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEEEE
Confidence 57887744444444446788999999999888777777766 5889999999999988888888887633 445554
Q ss_pred ecccccC---CCCCCCCCEEEE
Q 004347 589 STRAGGL---GINLTAADTCIL 607 (759)
Q Consensus 589 sT~agg~---GINL~~a~~VI~ 607 (759)
+....-. -+++...+.||+
T Consensus 124 Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 124 STQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EHHHHHHCHHHHTTCCCSEEEE
T ss_pred CHHHHHHHHHHhccccccEEEE
Confidence 4443311 145556777666
No 197
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=76.76 E-value=5.3 Score=41.41 Aligned_cols=42 Identities=12% Similarity=-0.054 Sum_probs=33.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN 252 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~ 252 (759)
.+|+-+.|+|||..++.++......+..++++.|.....+.+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 578999999999999999888776555578888888665443
No 198
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=76.45 E-value=12 Score=38.74 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=35.1
Q ss_pred HHHHHHH-HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC----CCCCCeEEEECCcc
Q 004347 197 GVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGN----GLHGPYLVIAPLST 249 (759)
Q Consensus 197 gv~~l~~-~~~~~~~~ILademGlGKTl~ai~li~~l~~~----~~~~~~LIV~P~sl 249 (759)
++..++. -+..|.-.+|+-+.|+|||..++.++...... |..+++++|.-...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4555552 23445556899999999999988887764322 12467888877554
No 199
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.89 E-value=2.7 Score=49.46 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=24.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEE
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 244 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV 244 (759)
+.+|.-++|+|||..|-++...+... ..+++.|
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD--EESMIRI 555 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEE
Confidence 37899999999999998888777433 2344444
No 200
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=74.33 E-value=18 Score=35.05 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=30.8
Q ss_pred HHHHHH-HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC----CCCCCeEEEECCc
Q 004347 198 VKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGN----GLHGPYLVIAPLS 248 (759)
Q Consensus 198 v~~l~~-~~~~~~~~ILademGlGKTl~ai~li~~l~~~----~~~~~~LIV~P~s 248 (759)
+.+++. -+..|.-.+|+-+.|+|||..+..++...... +..++++.+.-..
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 444442 22334456788899999999888877653221 1235667666543
No 201
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=72.68 E-value=14 Score=37.73 Aligned_cols=37 Identities=19% Similarity=0.049 Sum_probs=25.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCeEEEEC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAP 246 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~-~~~~~~~LIV~P 246 (759)
+...++.-..|+|||.++..++..+.. .| .+++++.-
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEec
Confidence 333455667999999998888877764 43 36666653
No 202
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=72.48 E-value=6.1 Score=40.75 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=28.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHH-hCCCCCCeEEEE
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIA 245 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~-~~~~~~~~LIV~ 245 (759)
+.+.+|.-++|+|||..+.+++..+. ..+ .+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEE
Confidence 46778999999999999999998887 654 3555443
No 203
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.45 E-value=7.3 Score=50.20 Aligned_cols=93 Identities=18% Similarity=0.108 Sum_probs=59.4
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCce-EEEEeCChhHHHHHHHhcC
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVS-AIIYHGSKKERDEIRRKHM 284 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~-~~~~~g~~~~r~~~~~~~~ 284 (759)
.++.+.+|.-+.|+|||..|++++.....+| ++++++.....+..-. ..+|.-++. ..++...
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~--a~~~G~dl~~l~v~~~~------------ 1488 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY--ARKLGVDIDNLLCSQPD------------ 1488 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH--HHHTTCCTTTCEEECCS------------
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH--HHHcCCCchhceeecCC------------
Confidence 3567789999999999999999988776653 5788888876553332 444432211 1111111
Q ss_pred CCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 285 PRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 285 ~~~~~~~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
+.+.+....+.......+++|||||..-+.
T Consensus 1489 -------------~~E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1489 -------------TGEQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp -------------SHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred -------------hHHHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 223444444445566789999999986443
No 204
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=72.43 E-value=10 Score=39.87 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=32.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN 252 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~ 252 (759)
|.-.+|.-+.|+|||..++.++..+...+ +++++|.+.....+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~ 103 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDP 103 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccch
Confidence 33347788899999999998888776643 67888888665543
No 205
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=71.43 E-value=15 Score=37.40 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=25.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
..+.-..|.|||..+..++..+... .++++++.-
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~ 134 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecC
Confidence 3455679999999988888777664 367777764
No 206
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=71.33 E-value=34 Score=32.05 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=27.6
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC--CccHHHHH
Q 004347 215 DQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP--LSTLSNWV 254 (759)
Q Consensus 215 demGlGKTl~ai~li~~l~~~~~~~~~LIV~P--~sll~~W~ 254 (759)
---|.|||..++.++..+...| .++++|=- ...+..|.
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~~~~~ 48 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSLTNWS 48 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCHHHHH
Confidence 4578999999999999888754 47777753 44455554
No 207
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=70.93 E-value=21 Score=36.82 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=25.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
..+.-..|.|||.++..++..+... .++++++.-
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~ 141 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAA 141 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 3455679999999988888777764 367777754
No 208
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=70.58 E-value=11 Score=38.66 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=24.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
..+.-..|+|||..+..++..+... .++++++.-
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~ 140 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAA 140 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcc
Confidence 3466679999999988888777664 356666653
No 209
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=70.12 E-value=4 Score=50.77 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=44.6
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC----CCCCeEEEECCccH
Q 004347 186 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG----LHGPYLVIAPLSTL 250 (759)
Q Consensus 186 ~~~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~----~~~~~LIV~P~sll 250 (759)
.+.+|.|-|..+|.. .+.+.++...-|+|||.+.+.-+.++...+ ....+|||+++...
T Consensus 7 ~~~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp ---CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHH
T ss_pred CCCCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHH
Confidence 456799999998753 366788889999999999888888877654 23478999997654
No 210
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=68.31 E-value=19 Score=44.32 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=68.2
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHH----hcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFL 587 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 587 (759)
.+||-.+.....-.....|.+++|.+..+..+......+. ..++.+..++|..+..++...+..... +.+.|++
T Consensus 634 GsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~--g~~dIvV 711 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE--GKIDILI 711 (1151)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT--TCCSEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc--CCCCEEE
Confidence 4778766554444445678899999998876665555544 346889999999999999999988886 3455666
Q ss_pred EecccccCCCCCCCCCEEEE
Q 004347 588 LSTRAGGLGINLTAADTCIL 607 (759)
Q Consensus 588 lsT~agg~GINL~~a~~VI~ 607 (759)
.+.......+++...+.||+
T Consensus 712 ~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEE
T ss_pred ECHHHHhCCccccccceEEE
Confidence 65566666788887777766
No 211
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=68.10 E-value=10 Score=46.79 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=36.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCC-CCeEEEECCccHHHHHHHHHHh
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLH-GPYLVIAPLSTLSNWVNEISRF 260 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~-~~~LIV~P~sll~~W~~E~~~~ 260 (759)
|+| ..|+|||.+++.-++++...+.. .++|+|||.....+-...+...
T Consensus 6 V~a-gAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~ 54 (1166)
T 3u4q_B 6 LVG-RSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKT 54 (1166)
T ss_dssp EEE-CTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCC
T ss_pred EEe-CCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHh
Confidence 444 48999999999999988876554 6899999988766644444433
No 212
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=67.72 E-value=10 Score=43.43 Aligned_cols=54 Identities=22% Similarity=0.328 Sum_probs=36.5
Q ss_pred CccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc
Q 004347 188 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 188 ~~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s 248 (759)
+.+.+-|.+++..+.... .+. .+|-..-|-|||..+..+++.+. +..+|.+|..
T Consensus 174 ~~~T~dQ~~al~~~~~~~-~~~-~vlta~RGRGKSa~lG~~~a~~~-----~~~~vtAP~~ 227 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMP-PGV-AAVTAARGRGKSALAGQLISRIA-----GRAIVTAPAK 227 (671)
T ss_dssp SSCCHHHHHHHHHHTTCC-SEE-EEEEECTTSSHHHHHHHHHHHSS-----SCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHhh-hCe-EEEecCCCCCHHHHHHHHHHHHH-----hCcEEECCCH
Confidence 467889999998887532 233 35566699999965555555443 2468889955
No 213
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=67.52 E-value=21 Score=39.45 Aligned_cols=59 Identities=3% Similarity=-0.120 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHH
Q 004347 198 VKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEI 257 (759)
Q Consensus 198 v~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~ 257 (759)
+..++.-+..|.-.+|+...|+|||.-++.++..+... ...++++++--....+....+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSCHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCCHHHHHHHH
Confidence 44454334455557999999999999999888877653 135899998866555555443
No 214
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=65.54 E-value=7.9 Score=42.04 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=26.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
.+++-..|.|||.++..++.++...+ ..++++|.-
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~ 137 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSA 137 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 45556799999999999999888761 246776665
No 215
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=65.45 E-value=16 Score=44.71 Aligned_cols=95 Identities=13% Similarity=0.139 Sum_probs=68.6
Q ss_pred hhccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHh---cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q 004347 511 EQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNE---KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFL 587 (759)
Q Consensus 511 ~~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 587 (759)
..|||-.+..-.+......+.++||.+..+..+..+...|.. .|+.+..++|+++..+|...+..+..++ +.|++
T Consensus 102 TGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~--~~IlV 179 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILV 179 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSC--CSEEE
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC--CCEEE
Confidence 358898866666555557889999999999988877777776 5789999999999888888888888643 44544
Q ss_pred EecccccC---CCCCCCCCEEEE
Q 004347 588 LSTRAGGL---GINLTAADTCIL 607 (759)
Q Consensus 588 lsT~agg~---GINL~~a~~VI~ 607 (759)
.++...-. -+++...+.||+
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEE
T ss_pred ECHHHHHHHHHhhcccCcCEEEE
Confidence 44433311 144566777766
No 216
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=64.80 E-value=14 Score=47.06 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=62.6
Q ss_pred HHHHHHH--HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChh
Q 004347 197 GVKWLIS--LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKK 274 (759)
Q Consensus 197 gv~~l~~--~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~ 274 (759)
.+..++. -+..+...+|+-+.|+|||..++.++......+ ++++++.-.....+.. ..++.-...
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql~--A~~lGvd~~--------- 785 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY--ARKLGVDID--------- 785 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHHH--HHHTTCCGG---------
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHHH--HHHcCCChh---------
Confidence 3555552 344556679999999999999999988877643 5788887755544432 222211110
Q ss_pred HHHHHHHhcCCCCCCCCCCEEE---ecHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 275 ERDEIRRKHMPRAIGPKFPIVV---TSYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 275 ~r~~~~~~~~~~~~~~~~~vvI---ttye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
++.+ ++.+.+...++.......+++||||....+.
T Consensus 786 ------------------~L~i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 786 ------------------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp ------------------GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ------------------heEEecCCcHHHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 0111 1344444444445556789999999999886
No 217
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=61.67 E-value=33 Score=36.99 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=25.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
..++-..|+|||..+..++..+... .++++++.-
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~ 134 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeec
Confidence 4556779999999998888887765 367777764
No 218
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=61.61 E-value=35 Score=35.50 Aligned_cols=53 Identities=13% Similarity=-0.028 Sum_probs=34.2
Q ss_pred HHHHHHH-HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC----CCCCCeEEEECCcc
Q 004347 197 GVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLKGN----GLHGPYLVIAPLST 249 (759)
Q Consensus 197 gv~~l~~-~~~~~~~~ILademGlGKTl~ai~li~~l~~~----~~~~~~LIV~P~sl 249 (759)
++..++. -+..|.-.+|+-+.|+|||..++.++...... +..+++++|.-...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3555552 22334445899999999999988887763221 13467888887554
No 219
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=61.21 E-value=14 Score=38.39 Aligned_cols=25 Identities=20% Similarity=-0.023 Sum_probs=20.3
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~ 231 (759)
.+...+|.-+.|+|||.-++.++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3444589999999999999888765
No 220
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=61.13 E-value=8 Score=45.41 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=27.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNW 253 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W 253 (759)
..+.+|.-+.|+|||+.|-+++..+ ..+++.|....++..|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~-----~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMW 551 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT-----TCEEEECCHHHHHTTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh-----CCceEEeccchhhccc
Confidence 4567999999999998877766543 2355655554444444
No 221
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=61.10 E-value=19 Score=46.58 Aligned_cols=101 Identities=17% Similarity=0.065 Sum_probs=66.2
Q ss_pred HHHHHHH--HhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChh
Q 004347 197 GVKWLIS--LWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKK 274 (759)
Q Consensus 197 gv~~l~~--~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~ 274 (759)
.+.+++. -+..+.-.+|+-+.|.|||.-++.++..+... .++++++.-.....+|.. .++. +.
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~--g~~VlyiS~Ees~~ql~A--~rlG--~~--------- 783 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIYA--RKLG--VD--------- 783 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHHH--HHTT--CC---------
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECCCcHHHHHH--HHcC--CC---------
Confidence 4666663 33445556999999999999999998887654 358999998888888852 2221 00
Q ss_pred HHHHHHHhcCCCCCCCCCCEEE---ecHHHHHHHHHHhhhhcCccEEEEcCcccccC
Q 004347 275 ERDEIRRKHMPRAIGPKFPIVV---TSYEVALSDARKYLRHYNWKYLVVDEGHRLKN 328 (759)
Q Consensus 275 ~r~~~~~~~~~~~~~~~~~vvI---ttye~l~~~~~~~l~~~~~~~lIvDEaH~ikn 328 (759)
..++.+ ++.+.+...++.+.....+++||||..+.+..
T Consensus 784 ----------------~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 784 ----------------IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp ----------------TTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred ----------------ccceEEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcc
Confidence 012222 23444444444444556789999999887754
No 222
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=58.68 E-value=22 Score=39.18 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=18.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHH
Q 004347 209 LNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~ 231 (759)
.+.+|.-+.|+|||..+=+++..
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999887666554
No 223
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=58.22 E-value=9 Score=37.55 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=30.9
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHH
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWV 254 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~ 254 (759)
+.++....|.|||..++.++..+...|..--+..+-|-.-...|.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHH
Confidence 468888999999999999999998876422222333433445554
No 224
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=57.66 E-value=44 Score=28.31 Aligned_cols=101 Identities=10% Similarity=-0.032 Sum_probs=59.3
Q ss_pred HHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhcc--CCCceEEEEecccccCCCCC
Q 004347 522 LLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV--NSSYRIFLLSTRAGGLGINL 599 (759)
Q Consensus 522 lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~--~~~~~v~LlsT~agg~GINL 599 (759)
.+..++..+..+..++.....+..+ ....+.++.++-.++...-.+.+...+.. ...+.|+++|...-..-...
T Consensus 19 ~l~~~l~~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~ 94 (133)
T 3nhm_A 19 TLRLLLSGEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPA 94 (133)
T ss_dssp HHHHHHTTTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----T
T ss_pred HHHHHHhCCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHH
Confidence 3344444677777766655554444 34568888888777655556666666553 23667777776532221222
Q ss_pred C--CCCEEEEeCCCCCcchhhHHhhhhhhcC
Q 004347 600 T--AADTCILYDSDWNPQMDLQAMDRCHRIG 628 (759)
Q Consensus 600 ~--~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 628 (759)
. +++. ++--|+++....+++.++.+-+
T Consensus 95 ~~~g~~~--~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 95 DQPVPDA--YLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp TSCCCSE--EEESSCCHHHHHHHHHHHHHHH
T ss_pred hhcCCce--EEeccCCHHHHHHHHHHHHhhh
Confidence 1 2333 3346889999999888886544
No 225
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=56.83 E-value=8.5 Score=42.04 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHhhc----CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHH
Q 004347 192 SYQLKGVKWLISLWQN----GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSN 252 (759)
Q Consensus 192 pyQ~~gv~~l~~~~~~----~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~ 252 (759)
+...+.+..++..+.. +.+.+|.-++|+|||..|-+++..+.. ..+++.+....+...
T Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~---~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 43 ENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS---KVPFCPMVGSEVYST 104 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT---TSCEEEEEGGGGCCS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC---CceEEEEeHHHHHHH
Confidence 3444444444443333 346799999999999999988887632 246776666554433
No 226
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=56.51 E-value=27 Score=28.90 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=46.5
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCC--CCCEEE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLT--AADTCI 606 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~--~a~~VI 606 (759)
.|..+..++.....+..+ ....+.++.++-.++...-.+.++.++...+...++++|...... .... +++..
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~- 97 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEY- 97 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEE-
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccce-
Confidence 466665554444333333 344567777776655333344555554333455666666543222 2221 23333
Q ss_pred EeCCCCCcchhhHHhhhhh
Q 004347 607 LYDSDWNPQMDLQAMDRCH 625 (759)
Q Consensus 607 ~~D~~wnp~~~~Qa~gR~~ 625 (759)
+--|+++....+++.++.
T Consensus 98 -l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 98 -VVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp -EECCSSTHHHHHHHHHHT
T ss_pred -EECCCCHHHHHHHHHHHh
Confidence 345777777777776654
No 227
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=56.20 E-value=66 Score=27.50 Aligned_cols=74 Identities=8% Similarity=-0.050 Sum_probs=33.1
Q ss_pred cCceEEEEeCCCCHHHHHHHHHHhhc--cCCCceEEEEecccccCC-CCCCCCCEEEEeCCCCCcchhhHHhhhhhh
Q 004347 553 KGYEVCRIDGSVRLDERKRQIQDFND--VNSSYRIFLLSTRAGGLG-INLTAADTCILYDSDWNPQMDLQAMDRCHR 626 (759)
Q Consensus 553 ~g~~~~~l~G~~~~~~R~~~i~~F~~--~~~~~~v~LlsT~agg~G-INL~~a~~VI~~D~~wnp~~~~Qa~gR~~R 626 (759)
..+.++.++-.++...-.+.+...+. ....+.|++++......- .....+...-++.-|.++....+++.++.+
T Consensus 50 ~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 50 GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 34566666654443233344444443 234555655554332211 111122222233446666666666665543
No 228
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=55.75 E-value=18 Score=31.57 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=36.8
Q ss_pred EEEEccchhH-------HHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhh
Q 004347 533 VLVFSQWTKI-------LDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFN 577 (759)
Q Consensus 533 vLIFsq~~~~-------ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 577 (759)
|.||+..... ...+..+|..+|++|..++=++..+.|.++.++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 5677654432 26888999999999999999999999999999984
No 229
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=54.54 E-value=93 Score=29.31 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=54.7
Q ss_pred hccHHHHHHH-HHHHHhh--CCCcEEEEccchhHHHHHHHHHHhc-----CceEEEEeCCCCHHHHHHHHHHhhccCCCc
Q 004347 512 QCGKFRLLDR-LLARLFA--RNHKVLVFSQWTKILDIMEYYFNEK-----GYEVCRIDGSVRLDERKRQIQDFNDVNSSY 583 (759)
Q Consensus 512 ~s~K~~~L~~-lL~~l~~--~~~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 583 (759)
.+||-....- ++..+.. .+.++||.+.....+..+.+.+... ++.+..++|+.+...+...+.. ...
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-----~~~ 135 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK-----NCP 135 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH-----SCC
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc-----CCC
Confidence 4778754333 3333322 2348999999988777666655543 7899999999987665544432 122
Q ss_pred eEEEEecc-cc-----cCCCCCCCCCEEEE
Q 004347 584 RIFLLSTR-AG-----GLGINLTAADTCIL 607 (759)
Q Consensus 584 ~v~LlsT~-ag-----g~GINL~~a~~VI~ 607 (759)
.| +++|. .. ...+++...+.||+
T Consensus 136 ~i-~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 136 HI-VVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp SE-EEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CE-EEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 34 55553 21 23466777777776
No 230
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=54.08 E-value=60 Score=27.98 Aligned_cols=58 Identities=7% Similarity=-0.002 Sum_probs=40.2
Q ss_pred CCcEEEEcc------chhHHHHHHHHHHhcCce---EEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe
Q 004347 530 NHKVLVFSQ------WTKILDIMEYYFNEKGYE---VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS 589 (759)
Q Consensus 530 ~~kvLIFsq------~~~~ld~L~~~L~~~g~~---~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls 589 (759)
.++|+||+. +.........+|...|++ |..++=....+.|..+..... ...+..+.+.
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg--~~tvP~vfI~ 81 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSE--WPTIPQLYVN 81 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHT--CCSSCEEEET
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhC--CCCCCeEEEC
Confidence 578999988 577888899999999998 888876666655555544332 3444444443
No 231
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=53.79 E-value=10 Score=37.22 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=22.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGL 237 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~ 237 (759)
|-+-++|.|||..+++++..+..+|.
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 56677999999999999999998763
No 232
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=53.65 E-value=96 Score=32.86 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=65.5
Q ss_pred hccHHHHHHHHHHHHh-hCCCcEEEEccchhHHHHHHHHHHhc-Cc---eEEEEeCCCCHHHHHHHHHHhhccCCCceEE
Q 004347 512 QCGKFRLLDRLLARLF-ARNHKVLVFSQWTKILDIMEYYFNEK-GY---EVCRIDGSVRLDERKRQIQDFNDVNSSYRIF 586 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~-~~~~kvLIFsq~~~~ld~L~~~L~~~-g~---~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~ 586 (759)
.+||-.....++.... ..+.++||.+.....+......+... |. .+..++|+....++..... . ..|+
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~----~~iv 105 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA---R----AKVI 105 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH---H----CSEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc---C----CCEE
Confidence 4788766655554433 46889999999988777666666544 55 8999999999876655433 1 2344
Q ss_pred EEeccccc-----CCCCCCCCCEEEEeCCC--CCcchhhHHhhhhhh
Q 004347 587 LLSTRAGG-----LGINLTAADTCILYDSD--WNPQMDLQAMDRCHR 626 (759)
Q Consensus 587 LlsT~agg-----~GINL~~a~~VI~~D~~--wnp~~~~Qa~gR~~R 626 (759)
+.+..... ..+++...+.||+=+.+ -+...+.+...+..+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~ 152 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKR 152 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred EecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHh
Confidence 44443322 24567777777773322 233344444444443
No 233
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=53.25 E-value=65 Score=29.14 Aligned_cols=80 Identities=10% Similarity=-0.002 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhc----CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe
Q 004347 514 GKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEK----GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS 589 (759)
Q Consensus 514 ~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls 589 (759)
.+..+..+|+.+....|.||+|+|.....++.|.+.|-.. -++... .|.-. ..... ++|+
T Consensus 23 ~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~-~~~~~--------------~~~~P-V~L~ 86 (150)
T 3sxu_A 23 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNL-AGEGP--------------RGGAP-VEIA 86 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEE-TTCSS--------------TTCCS-EEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCcc-CCCCC--------------CCCCC-EEEe
Confidence 3677888999999999999999999999999999999764 233332 23222 11223 4565
Q ss_pred cccccCCCCCCCCCEEEEeCCCC
Q 004347 590 TRAGGLGINLTAADTCILYDSDW 612 (759)
Q Consensus 590 T~agg~GINL~~a~~VI~~D~~w 612 (759)
+... .+-..++.+|+++..+
T Consensus 87 ~~~~---~~~~~~~vLinL~~~~ 106 (150)
T 3sxu_A 87 WPQK---RSSSRRDILISLRTSF 106 (150)
T ss_dssp CTTS---CCCSCCSEEEECCSSC
T ss_pred CCCC---CCCCcCCEEEECCCCC
Confidence 4221 1123577899988876
No 234
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=52.80 E-value=33 Score=35.13 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=33.6
Q ss_pred HHHHHHH-HhhcCCCeEEEcCCCCcHHHHHHHHHHHHH-h-----------CC-C-CCCeEEEECCcc
Q 004347 197 GVKWLIS-LWQNGLNGILADQMGLGKTIQTIAFLAHLK-G-----------NG-L-HGPYLVIAPLST 249 (759)
Q Consensus 197 gv~~l~~-~~~~~~~~ILademGlGKTl~ai~li~~l~-~-----------~~-~-~~~~LIV~P~sl 249 (759)
++.+++. -+..|.-.+|+-+.|+|||..++.++.... . .| . .+++++|.-...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 4555552 223344468999999999999988876532 1 11 1 157888887554
No 235
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=52.72 E-value=90 Score=30.09 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=55.4
Q ss_pred hccHHHH-HHHHHHHHh-------hCCCcEEEEccchhHHHHHHH----HHHhcCceEEEEeCCCCHHHHHHHHHHhhcc
Q 004347 512 QCGKFRL-LDRLLARLF-------ARNHKVLVFSQWTKILDIMEY----YFNEKGYEVCRIDGSVRLDERKRQIQDFNDV 579 (759)
Q Consensus 512 ~s~K~~~-L~~lL~~l~-------~~~~kvLIFsq~~~~ld~L~~----~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 579 (759)
.|||-.. +.-++..+. ..+.++||.+.....+..+.+ ++...++.+..+.|+.+.......+..
T Consensus 76 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---- 151 (242)
T 3fe2_A 76 GSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER---- 151 (242)
T ss_dssp TSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----
T ss_pred cCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----
Confidence 4788654 444555544 246789999998876655544 444458999999999987665554432
Q ss_pred CCCceEEEEecc-cc-----cCCCCCCCCCEEEE
Q 004347 580 NSSYRIFLLSTR-AG-----GLGINLTAADTCIL 607 (759)
Q Consensus 580 ~~~~~v~LlsT~-ag-----g~GINL~~a~~VI~ 607 (759)
. +. ++++|. .. ...+++...+.||+
T Consensus 152 ~--~~-I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 152 G--VE-ICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp C--CS-EEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred C--CC-EEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 2 33 455553 11 12456777777765
No 236
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=52.72 E-value=11 Score=37.41 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=23.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGL 237 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~ 237 (759)
|.+-++|.|||+.+++++..+..+|.
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G~ 51 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACGV 51 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 67778999999999999999998763
No 237
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=52.35 E-value=16 Score=30.15 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=43.0
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccC--CCceEEEEecccccCCCCCC--CCCE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVN--SSYRIFLLSTRAGGLGINLT--AADT 604 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~--~~~~v~LlsT~agg~GINL~--~a~~ 604 (759)
.|..+..++.....+..+. ...+.++.++-.++...-.+.+...+... ..+.+++++...... ... +++.
T Consensus 24 ~g~~v~~~~~~~~~~~~l~----~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~~ 97 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQLD----LLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQASA 97 (119)
T ss_dssp TTCEEEEESCHHHHHHHHH----HHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCSE
T ss_pred CCcEEEEecCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHHH
Confidence 4666665554444444332 33566777776554333344444444322 345555555443222 111 2222
Q ss_pred EEEeCCCCCcchhhHHhhhhh
Q 004347 605 CILYDSDWNPQMDLQAMDRCH 625 (759)
Q Consensus 605 VI~~D~~wnp~~~~Qa~gR~~ 625 (759)
++.-|.++....+++.++.
T Consensus 98 --~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 98 --ILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp --ECSSCSTTHHHHHHHHTTC
T ss_pred --hccCCCCHHHHHHHHHHHh
Confidence 3344666666666666553
No 238
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=52.29 E-value=9.4 Score=39.44 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 198 VKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 198 v~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l 232 (759)
+..+......+.+.+|.-+.|+|||..+-++...+
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 33333333447789999999999998887776544
No 239
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=51.81 E-value=48 Score=27.87 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=43.8
Q ss_pred HHHHHHhhCCCcEEEEcc------chhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe
Q 004347 521 RLLARLFARNHKVLVFSQ------WTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS 589 (759)
Q Consensus 521 ~lL~~l~~~~~kvLIFsq------~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls 589 (759)
+.+..+. ..++|+||+. +.........+|...|++|..++=......+..+.+... ...+.++.+.
T Consensus 9 ~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g--~~tvP~ifi~ 80 (109)
T 3ipz_A 9 DTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN--WPTFPQLYIG 80 (109)
T ss_dssp HHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT--CSSSCEEEET
T ss_pred HHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC--CCCCCeEEEC
Confidence 3444443 3678999987 577889999999999999988876555555555444332 3444444444
No 240
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=51.68 E-value=60 Score=32.97 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=24.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
++.-..|.|||..+..++..+... .++++++.-
T Consensus 102 ~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~ 134 (297)
T 1j8m_F 102 MLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGA 134 (297)
T ss_dssp EEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEec
Confidence 455679999999988888777665 357777665
No 241
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=51.67 E-value=23 Score=29.99 Aligned_cols=96 Identities=10% Similarity=0.011 Sum_probs=54.7
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhcc--CCCceEEEEecccccCCCCCC--CCCE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV--NSSYRIFLLSTRAGGLGINLT--AADT 604 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~--~~~~~v~LlsT~agg~GINL~--~a~~ 604 (759)
.|..+..+......++.+ ....+.++.++-.++...-.+.+...+.. ...+.|++++......-.... +++.
T Consensus 26 ~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~ 101 (127)
T 3i42_A 26 LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF 101 (127)
T ss_dssp TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE
T ss_pred cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH
Confidence 466666666554444444 44567888888776655555666666553 456677777654433221111 2333
Q ss_pred EEEeCCCCCcchhhHHhhhhhhcCCC
Q 004347 605 CILYDSDWNPQMDLQAMDRCHRIGQT 630 (759)
Q Consensus 605 VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 630 (759)
++--|.++....+++.++++-++.
T Consensus 102 --~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 102 --YLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp --EEESSCCHHHHHHHHHHHC-----
T ss_pred --heeCCCCHHHHHHHHHHhhccCCC
Confidence 445688899999988888776543
No 242
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=51.49 E-value=50 Score=27.96 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=43.4
Q ss_pred HHHHHHhhCCCcEEEEcc------chhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe
Q 004347 521 RLLARLFARNHKVLVFSQ------WTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS 589 (759)
Q Consensus 521 ~lL~~l~~~~~kvLIFsq------~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls 589 (759)
..+..+. ..++|+||+. +.........+|...|++|..++=....+.|..+.+ +.. ...+.++.+.
T Consensus 7 ~~v~~~i-~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~-~~g-~~tvP~ifi~ 78 (111)
T 3zyw_A 7 LRLKKLT-HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA-YSS-WPTYPQLYVS 78 (111)
T ss_dssp HHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH-HHT-CCSSCEEEET
T ss_pred HHHHHHH-hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH-HHC-CCCCCEEEEC
Confidence 3344443 3678999984 667788899999999999988876666555555443 332 3444444444
No 243
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=51.23 E-value=55 Score=36.05 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=26.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
.+++-..|+|||..+..++.++...| .++++|+.
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~~~G--~kVllVd~ 137 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQRKG--WKTCLICA 137 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEec
Confidence 45666689999999999998887653 46777776
No 244
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=50.16 E-value=12 Score=37.18 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGL 237 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~ 237 (759)
|-+-++|.|||..++++++.+..+|.
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 67778999999999999999998763
No 245
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=49.97 E-value=18 Score=42.37 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=17.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLA 230 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~ 230 (759)
.+|.+|.-..|+|||+.+=+++.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999987666554
No 246
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=49.12 E-value=1.3e+02 Score=29.30 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=54.0
Q ss_pred hccHHHH-HHHHHHHHhhC--CCcEEEEccchhHHHHHHHHHH----hcCceEEEEeCCCCHHHHHHHHHHhhccCCCce
Q 004347 512 QCGKFRL-LDRLLARLFAR--NHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 584 (759)
Q Consensus 512 ~s~K~~~-L~~lL~~l~~~--~~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 584 (759)
.+||-.. +.-++..+... +.++||.+.....+..+...+. ..|+.+..+.|+.+...+...+ .. ...
T Consensus 90 GsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~---~~~ 163 (249)
T 3ber_A 90 GSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---AK---KPH 163 (249)
T ss_dssp TSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---HT---CCS
T ss_pred CCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---cC---CCC
Confidence 4788654 44444444433 4579999998876665554444 3488999999998865443333 22 233
Q ss_pred EEEEecc-cc------cCCCCCCCCCEEEE
Q 004347 585 IFLLSTR-AG------GLGINLTAADTCIL 607 (759)
Q Consensus 585 v~LlsT~-ag------g~GINL~~a~~VI~ 607 (759)
| +++|. .. ..++++...+.||+
T Consensus 164 I-~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 164 I-IIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp E-EEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred E-EEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 4 55553 21 24567777777776
No 247
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=47.91 E-value=20 Score=34.42 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=26.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
|..-..|.|||..++.++..+...| .+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G--~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG--YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT--CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcc
Confidence 4555689999999999999998765 47887755
No 248
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=47.52 E-value=77 Score=30.29 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=55.1
Q ss_pred hccHHHH-HHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHHhc-----CceEEEEeCCCCHHHHHHHHHHhhccCCCc
Q 004347 512 QCGKFRL-LDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNEK-----GYEVCRIDGSVRLDERKRQIQDFNDVNSSY 583 (759)
Q Consensus 512 ~s~K~~~-L~~lL~~l~~--~~~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 583 (759)
.+||-.. +.-++..+.. .+.++||.+.....+..+...+... ++.+..++|+.+...+...+ + ..
T Consensus 71 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~----~~ 143 (230)
T 2oxc_A 71 GTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K----KC 143 (230)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T----SC
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c----CC
Confidence 4788755 4555555432 3578999999988777666665543 78899999999876554433 2 23
Q ss_pred eEEEEecc-cc-----cCCCCCCCCCEEEE
Q 004347 584 RIFLLSTR-AG-----GLGINLTAADTCIL 607 (759)
Q Consensus 584 ~v~LlsT~-ag-----g~GINL~~a~~VI~ 607 (759)
.| +++|. .. ...+++...+.||+
T Consensus 144 ~I-iv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 144 HI-AVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp SE-EEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CE-EEECHHHHHHHHhcCCcccccCCEEEe
Confidence 34 55554 22 22456666666655
No 249
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=47.38 E-value=16 Score=35.55 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=29.2
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHH-hCCCCCCeEEEECCccHHHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVN 255 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~-~~~~~~~~LIV~P~sll~~W~~ 255 (759)
..|.-..|.-+.|+|||..+-.++.... .. .+..+++.-.....+...
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~ 76 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRR 76 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEccCCHHHHHH
Confidence 3455567888899999987766664333 22 245666666554444333
No 250
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=47.09 E-value=21 Score=31.00 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhCC-CcEEEEcc-chhHHHHHHHHHHhcCceEEEEeCCCCH
Q 004347 515 KFRLLDRLLARLFARN-HKVLVFSQ-WTKILDIMEYYFNEKGYEVCRIDGSVRL 566 (759)
Q Consensus 515 K~~~L~~lL~~l~~~~-~kvLIFsq-~~~~ld~L~~~L~~~g~~~~~l~G~~~~ 566 (759)
++..+...+..+ ..+ .+++|||. .-.........|...|+++..++|++..
T Consensus 74 ~~~~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 74 KLKDIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp GHHHHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cHHHHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 334444444444 345 88999994 5555667778888899999999998763
No 251
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=46.91 E-value=44 Score=28.66 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=47.2
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhc--cCCCceEEEEeccccc-----CCCCCCC
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFND--VNSSYRIFLLSTRAGG-----LGINLTA 601 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~--~~~~~~v~LlsT~agg-----~GINL~~ 601 (759)
.|..+..+......++.+ ....+.++.++-.++...-.+.+..++. ....+.|++++..... ..+.. +
T Consensus 29 ~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~-g 103 (140)
T 3grc_A 29 GGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPL-A 103 (140)
T ss_dssp TTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTT-C
T ss_pred CCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhc-C
Confidence 455555555443333333 3345667777766554444555555554 2345666666654221 11211 2
Q ss_pred CCEEEEeCCCCCcchhhHHhhhhhhc
Q 004347 602 ADTCILYDSDWNPQMDLQAMDRCHRI 627 (759)
Q Consensus 602 a~~VI~~D~~wnp~~~~Qa~gR~~Ri 627 (759)
|+. ++--|.++....+++.++.+-
T Consensus 104 ~~~--~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 104 VST--WLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp CCE--EECSSCCHHHHHHHHHHHHHH
T ss_pred CCE--EEeCCCCHHHHHHHHHHHHHh
Confidence 222 234567777777777766553
No 252
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=46.82 E-value=26 Score=36.69 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=25.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
+.+.+|.-++|+|||..|-++...+ ..|++.+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~-----~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL-----DVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEech
Confidence 4567999999999999887776655 246665544
No 253
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=46.76 E-value=77 Score=26.15 Aligned_cols=65 Identities=17% Similarity=0.076 Sum_probs=43.7
Q ss_pred HHHHHHhhCCCcEEEEc------cchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEE
Q 004347 521 RLLARLFARNHKVLVFS------QWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLL 588 (759)
Q Consensus 521 ~lL~~l~~~~~kvLIFs------q~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Ll 588 (759)
+.+..+.+ .++|+||+ .+......+..+|...|++|..++=......+..+...+.. ..+.++++
T Consensus 8 ~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~--~~vP~v~i 78 (105)
T 2yan_A 8 ERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW--PTYPQLYV 78 (105)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC--CSSCEEEE
T ss_pred HHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC--CCCCeEEE
Confidence 33444443 45799997 46667888889999999999998877776666666555543 34444443
No 254
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=46.56 E-value=46 Score=40.49 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=62.8
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHH----hcCc----eEEEEeCCCCHHHHHHHHHHhhccCCCc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFN----EKGY----EVCRIDGSVRLDERKRQIQDFNDVNSSY 583 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~----~~g~----~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 583 (759)
.|||-.+..-++..+...+.++||.++....+..+...+. ..|+ .+..++|+++...+.+..+.+.. +
T Consensus 81 GSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~----~ 156 (1054)
T 1gku_B 81 GVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN----F 156 (1054)
T ss_dssp TSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----C
T ss_pred CCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----C
Confidence 5789877777777777788899999999886655555444 4467 89999999998888777777764 3
Q ss_pred eEEEEecccccCCCC-CCCCCEEEE
Q 004347 584 RIFLLSTRAGGLGIN-LTAADTCIL 607 (759)
Q Consensus 584 ~v~LlsT~agg~GIN-L~~a~~VI~ 607 (759)
.|++.+....-.-+. |...+.||+
T Consensus 157 ~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 157 KIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp SEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred CEEEEcHHHHHHHHHHhccCCEEEE
Confidence 444444433222222 556666665
No 255
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=46.32 E-value=65 Score=26.95 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=40.3
Q ss_pred EEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhc
Q 004347 533 VLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFND 578 (759)
Q Consensus 533 vLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 578 (759)
.+|||.-...+..|...+...|..++.+.+......|.+.++.|..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 5788888888888888888889999999999998889999999986
No 256
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=44.80 E-value=96 Score=26.71 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=40.3
Q ss_pred CCcEEEEcc------chhHHHHHHHHHHhcCc-eEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccccc
Q 004347 530 NHKVLVFSQ------WTKILDIMEYYFNEKGY-EVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGG 594 (759)
Q Consensus 530 ~~kvLIFsq------~~~~ld~L~~~L~~~g~-~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg 594 (759)
.++|+||+. +..........|...|+ +|..++=....+-|+.+ ..+.....=.+||+-..-.||
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l-~~~sg~~TvPqIFI~g~~IGG 89 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGI-KDYSNWPTIPQVYLNGEFVGG 89 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHH-HHHHTCCSSCEEEETTEEEEC
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHH-HHhccCCCCCeEeECCEEECC
Confidence 478999965 35566777778888887 58888776666555554 445432333455554444444
No 257
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=44.34 E-value=52 Score=27.81 Aligned_cols=76 Identities=9% Similarity=0.035 Sum_probs=47.7
Q ss_pred ceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccccc-----CCC-CCCCCCEEEEeCCCCCcchhhHHhhhhhhcC
Q 004347 555 YEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGG-----LGI-NLTAADTCILYDSDWNPQMDLQAMDRCHRIG 628 (759)
Q Consensus 555 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg-----~GI-NL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 628 (759)
+..+.++-.++...-.+.+..++.......|++++..... ..+ ....+...-++.-|+++....+++.++...+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 7888888888776667777777765566777777754331 100 0112223334556888888888888887665
Q ss_pred CC
Q 004347 629 QT 630 (759)
Q Consensus 629 Q~ 630 (759)
+.
T Consensus 127 ~~ 128 (135)
T 3eqz_A 127 AE 128 (135)
T ss_dssp --
T ss_pred cc
Confidence 43
No 258
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=43.87 E-value=1.4e+02 Score=29.23 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=55.0
Q ss_pred hccHHHH-HHHHHHHHhh------CCCcEEEEccchhHHHHHHHHHH----hcCceEEEEeCCCCHHHHHHHHHHhhccC
Q 004347 512 QCGKFRL-LDRLLARLFA------RNHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQDFNDVN 580 (759)
Q Consensus 512 ~s~K~~~-L~~lL~~l~~------~~~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 580 (759)
.|||-.. +.-++..+.. .+.++||.+.....+..+...+. ..+..+..+.|+.........+ .. .
T Consensus 101 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~ 176 (262)
T 3ly5_A 101 GSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GN-G 176 (262)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HH-C
T ss_pred CCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cC-C
Confidence 4778754 4444544433 57789999998876655555544 4578889999988865544333 22 2
Q ss_pred CCceEEEEecc-------cccCCCCCCCCCEEEE
Q 004347 581 SSYRIFLLSTR-------AGGLGINLTAADTCIL 607 (759)
Q Consensus 581 ~~~~v~LlsT~-------agg~GINL~~a~~VI~ 607 (759)
+.| +++|. ..+.++++...+.||+
T Consensus 177 --~~I-iv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 177 --INI-IVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp --CSE-EEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred --CCE-EEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 334 66662 1223567777877766
No 259
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=43.84 E-value=98 Score=26.52 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=40.9
Q ss_pred CCcEEEEcc------chhHHHHHHHHHHhcCce-EEEEeCCCCHHHHHHHHHHhhccCCCceEEEEec
Q 004347 530 NHKVLVFSQ------WTKILDIMEYYFNEKGYE-VCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLST 590 (759)
Q Consensus 530 ~~kvLIFsq------~~~~ld~L~~~L~~~g~~-~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT 590 (759)
.++|+||+. +.........+|...|++ |..++=....+.|..+. .+.. ...+.++.+.-
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~-~~tg-~~tvP~vfI~g 84 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIK-DYSN-WPTIPQVYLNG 84 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHH-HHHT-CCSSCEEEETT
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHH-HHhC-CCCcCeEEECC
Confidence 468999988 577888999999999995 88888666665555544 3432 34454555543
No 260
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=43.82 E-value=19 Score=34.72 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=20.0
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 004347 210 NGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l 232 (759)
+.++.-..|+|||..|.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999988876
No 261
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=43.66 E-value=51 Score=36.70 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=20.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
+...+|.-+.|+|||..+-++...+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5567899999999998877666655
No 262
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=43.26 E-value=42 Score=32.89 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=19.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
..+.+|.-++|+|||..+-++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4467899999999998877776654
No 263
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=43.11 E-value=1.1e+02 Score=28.38 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=55.6
Q ss_pred hccHHHH-HHHHHHHHh-----hCCCcEEEEccchhHHHHHHHHHHhc--CceEEEEeCCCCHHHHHHHHHHhhccCCCc
Q 004347 512 QCGKFRL-LDRLLARLF-----ARNHKVLVFSQWTKILDIMEYYFNEK--GYEVCRIDGSVRLDERKRQIQDFNDVNSSY 583 (759)
Q Consensus 512 ~s~K~~~-L~~lL~~l~-----~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 583 (759)
.+||-.. +.-++..+. ..+.++||.+.....+..+...+... ++.+..++|+.+.......+. . . .
T Consensus 48 GsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~--~ 121 (207)
T 2gxq_A 48 GTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL---R-G--A 121 (207)
T ss_dssp TSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---H-C--C
T ss_pred CChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---C-C--C
Confidence 4788765 444455443 24678999999988877777777654 478888999887554443332 1 2 2
Q ss_pred eEEEEecc-cc-----cCCCCCCCCCEEEE
Q 004347 584 RIFLLSTR-AG-----GLGINLTAADTCIL 607 (759)
Q Consensus 584 ~v~LlsT~-ag-----g~GINL~~a~~VI~ 607 (759)
.| +++|. .. ...+++...+.||+
T Consensus 122 ~i-~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 122 DA-VVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp SE-EEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred CE-EEECHHHHHHHHHcCCcchhhceEEEE
Confidence 34 55553 11 12456677777776
No 264
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=42.78 E-value=48 Score=42.22 Aligned_cols=89 Identities=18% Similarity=0.127 Sum_probs=59.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHHHHHHhCCCceEEEEeCChhHHHHHHHhcCCCCCCC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGP 290 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~~ 290 (759)
..+.-+.|+|||..++.+++.....| ++.++|.+.+.+.+-. +.++.-++.-++..-
T Consensus 1434 iei~g~~~sGkttl~~~~~a~~~~~g--~~~~~i~~e~~~~~~~--~~~~Gv~~~~l~~~~------------------- 1490 (1706)
T 3cmw_A 1434 VEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY--ARKLGVDIDNLLCSQ------------------- 1490 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHHH--HHHTTCCGGGCEEEC-------------------
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEEecCCCCCHHH--HHHcCCCHHHeEEeC-------------------
Confidence 46788899999999999998776654 6888888876554322 455543321111110
Q ss_pred CCCEEEecHHHHHHHHHHhhhhcCccEEEEcCccccc
Q 004347 291 KFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLK 327 (759)
Q Consensus 291 ~~~vvIttye~l~~~~~~~l~~~~~~~lIvDEaH~ik 327 (759)
-.+++....-+...++....++||||..-.+-
T Consensus 1491 -----p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1491 -----PDTGEQALEICDALARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp -----CSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred -----CCcHHHHHHHHHHHHHcCCCCEEEEccHHhCC
Confidence 02345555555567888899999999987764
No 265
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=42.61 E-value=16 Score=30.76 Aligned_cols=38 Identities=13% Similarity=0.317 Sum_probs=32.3
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCC
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 565 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~ 565 (759)
..+..++|||..-.........|...|+++..++|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 45778999998877777888889999999999999865
No 266
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=42.30 E-value=1.3e+02 Score=28.75 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=50.2
Q ss_pred hccHHHH-HHHHHHHHh------hCCCcEEEEccchhHHHHHHHHHHh----cCceEEEEeCCCCHHHHHHHHHHhhccC
Q 004347 512 QCGKFRL-LDRLLARLF------ARNHKVLVFSQWTKILDIMEYYFNE----KGYEVCRIDGSVRLDERKRQIQDFNDVN 580 (759)
Q Consensus 512 ~s~K~~~-L~~lL~~l~------~~~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 580 (759)
.+||-.. +.-++..+. ..+.++||.+.....+..+...+.. .++.+..++|+.+.......+ +
T Consensus 72 GsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--- 145 (236)
T 2pl3_A 72 GSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N--- 145 (236)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T---
T ss_pred CCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C---
Confidence 4778764 333333332 2467899999988876666655554 358899999987754443332 2
Q ss_pred CCceEEEEecc-cc------cCCCCCCCCCEEEE
Q 004347 581 SSYRIFLLSTR-AG------GLGINLTAADTCIL 607 (759)
Q Consensus 581 ~~~~v~LlsT~-ag------g~GINL~~a~~VI~ 607 (759)
+..| +++|. .. +..+++...+.||+
T Consensus 146 -~~~i-iv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 146 -NINI-LVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp -TCSE-EEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred -CCCE-EEECHHHHHHHHHhcCCcccccccEEEE
Confidence 2334 55553 22 12356666666665
No 267
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=41.76 E-value=1.4e+02 Score=30.67 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=55.8
Q ss_pred hccHHHHH-HHHHHHHhh--CCCcEEEEccchhHHHHHHHHHHhc-----CceEEEEeCCCCHHHHHHHHHHhhccCCCc
Q 004347 512 QCGKFRLL-DRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNEK-----GYEVCRIDGSVRLDERKRQIQDFNDVNSSY 583 (759)
Q Consensus 512 ~s~K~~~L-~~lL~~l~~--~~~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 583 (759)
.+||-... .-++..+.. .+.++||.+.....+..+...+... ++.+..++|+.+.......+.. ...
T Consensus 55 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~ 129 (391)
T 1xti_A 55 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK-----NCP 129 (391)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH-----SCC
T ss_pred CCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc-----CCC
Confidence 47787543 333333322 3558999999988777666655543 7899999999987665554432 223
Q ss_pred eEEEEecccc-----cCCCCCCCCCEEEE
Q 004347 584 RIFLLSTRAG-----GLGINLTAADTCIL 607 (759)
Q Consensus 584 ~v~LlsT~ag-----g~GINL~~a~~VI~ 607 (759)
.|++.+.... ...+++...+.||+
T Consensus 130 ~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 130 HIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 3444443322 23456777777776
No 268
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=41.27 E-value=13 Score=36.12 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=23.7
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 214 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 214 ademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
.---|.|||..++.++..+...| .++|+|=
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g--~~VlliD 35 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDY--DKIYAVD 35 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTC--SCEEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 44679999999999998888765 5777763
No 269
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=40.89 E-value=34 Score=29.48 Aligned_cols=94 Identities=9% Similarity=0.068 Sum_probs=43.6
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccC----CCCCCCCCE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGL----GINLTAADT 604 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~----GINL~~a~~ 604 (759)
.|..+..++.....+..+ ....+.++.++- ++...-.+.+...+.....+.|++++...... .+. .+++.
T Consensus 27 ~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~-~g~~~ 100 (142)
T 2qxy_A 27 DGFNVIWAKNEQEAFTFL----RREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVK-AGAVD 100 (142)
T ss_dssp GTCEEEEESSHHHHHHHH----TTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHH-HTCSC
T ss_pred CCCEEEEECCHHHHHHHH----hccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-CCcce
Confidence 355555444433333332 334566677776 65544455555555433455666665432110 000 01222
Q ss_pred EEEeCCCCCcchhhHHhhhhhhcCCC
Q 004347 605 CILYDSDWNPQMDLQAMDRCHRIGQT 630 (759)
Q Consensus 605 VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 630 (759)
+ +.-|.++....+++.++.+-.+.
T Consensus 101 ~--l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 101 Y--ILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp E--EESSCCHHHHHHHHHHHHHC---
T ss_pred e--EeCCCCHHHHHHHHHHHHhhccc
Confidence 2 22356666666666666654443
No 270
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=40.87 E-value=28 Score=29.54 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=14.7
Q ss_pred CcEEEEccchhHHHHHHHHHHhcCceE
Q 004347 531 HKVLVFSQWTKILDIMEYYFNEKGYEV 557 (759)
Q Consensus 531 ~kvLIFsq~~~~ld~L~~~L~~~g~~~ 557 (759)
.+|||..........+...|...|+.+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v 33 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQV 33 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEE
Confidence 455555555555555555555555543
No 271
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=40.77 E-value=94 Score=29.50 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=50.8
Q ss_pred hccHHHH-HHHHHHHHh--------hCCCcEEEEccchhHHHHHHHHHHh---cCceEEEEeCCCCHHHHHHHHHHhhcc
Q 004347 512 QCGKFRL-LDRLLARLF--------ARNHKVLVFSQWTKILDIMEYYFNE---KGYEVCRIDGSVRLDERKRQIQDFNDV 579 (759)
Q Consensus 512 ~s~K~~~-L~~lL~~l~--------~~~~kvLIFsq~~~~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~ 579 (759)
.|||-.. +.-++..+. ..+.++||.+.....+..+.+.+.. .++.+..+.|+.+...+... +..
T Consensus 67 GsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 142 (228)
T 3iuy_A 67 GTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK- 142 (228)
T ss_dssp TSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS-
T ss_pred CChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC-
Confidence 4778643 333444332 2578899999999887777777765 37888899988775443333 332
Q ss_pred CCCceEEEEecc-c-----ccCCCCCCCCCEEEE
Q 004347 580 NSSYRIFLLSTR-A-----GGLGINLTAADTCIL 607 (759)
Q Consensus 580 ~~~~~v~LlsT~-a-----gg~GINL~~a~~VI~ 607 (759)
+..| +++|. . ....+++...+.||+
T Consensus 143 --~~~i-iv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 143 --GVDI-IIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp --CCSE-EEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred --CCCE-EEECHHHHHHHHHcCCcCcccceEEEE
Confidence 2334 55553 1 123556777777765
No 272
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=38.90 E-value=1.8e+02 Score=24.58 Aligned_cols=97 Identities=11% Similarity=0.103 Sum_probs=46.8
Q ss_pred HHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccC--CCceEEEEecccccCC-CCCC
Q 004347 524 ARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVN--SSYRIFLLSTRAGGLG-INLT 600 (759)
Q Consensus 524 ~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~--~~~~v~LlsT~agg~G-INL~ 600 (759)
..++.....+..+......++.+ ....+.++.++-.++...-.+.+...+... ..+.|++++......- ....
T Consensus 20 ~~~l~~~~~v~~~~~~~~a~~~~----~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~ 95 (140)
T 3n53_A 20 KNFLDSEYLVIESKNEKEALEQI----DHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGL 95 (140)
T ss_dssp HHHHTTTSEEEEESSHHHHHHHH----HHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTT
T ss_pred HHHHHhcceEEEeCCHHHHHHHH----hcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHH
Confidence 33333334555555444444443 334577888887776656666666666533 4566666665432211 1111
Q ss_pred --CCCEEEEeCCCCCcchhhHHhhhhhh
Q 004347 601 --AADTCILYDSDWNPQMDLQAMDRCHR 626 (759)
Q Consensus 601 --~a~~VI~~D~~wnp~~~~Qa~gR~~R 626 (759)
+|+.+ +--|+++....+++.++.+
T Consensus 96 ~~g~~~~--l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 96 HSGADDY--LTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp TCCCSEE--EESSCCHHHHHHHHHHHHH
T ss_pred hcCCCee--eeCCCCHHHHHHHHHHHHh
Confidence 23333 2346777777777766654
No 273
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=38.89 E-value=75 Score=35.74 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=56.7
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
.+||-.. -++..+. .+.++||.++.+..+.-....|...|+++..++|+++..++......+....+...|++++..
T Consensus 69 GsGKTl~--~~lpal~-~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 69 GGGKSLC--YQLPALC-SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp TSCTTHH--HHHHHHT-SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CChHHHH--HHHHHHH-cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 3566532 2333333 356899999999988877888888899999999999999988888888543456667666654
No 274
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=38.76 E-value=32 Score=32.81 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=30.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE--CCccHHHHHHH
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA--PLSTLSNWVNE 256 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~--P~sll~~W~~E 256 (759)
+..---|.|||..++.++..+...| ++|+|= |...+..|...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGWGKR 48 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHHhcC
Confidence 4455679999999999999888764 677753 55566677643
No 275
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=38.66 E-value=83 Score=26.33 Aligned_cols=93 Identities=11% Similarity=0.104 Sum_probs=49.4
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhc-CceEEEEeCCCCH-HHHHHHHHHhhccCCCceEEEEeccccc----CCCCCCCC
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEK-GYEVCRIDGSVRL-DERKRQIQDFNDVNSSYRIFLLSTRAGG----LGINLTAA 602 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~l~G~~~~-~~R~~~i~~F~~~~~~~~v~LlsT~agg----~GINL~~a 602 (759)
.|..+..++.....+..+ ... .+.++.++-.++. ..-.+.+...+.....+.|++++..... .++..
T Consensus 28 ~g~~v~~~~~~~~a~~~l----~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~--- 100 (132)
T 2rdm_A 28 AGFLVTAVSSGAKAIEML----KSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPD--- 100 (132)
T ss_dssp TTCEEEEESSHHHHHHHH----HTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT---
T ss_pred cCCEEEEECCHHHHHHHH----HcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC---
Confidence 466666555444444333 333 5677777765543 2333445555433345666666654321 22222
Q ss_pred CEEEEeCCCCCcchhhHHhhhhhhcCCC
Q 004347 603 DTCILYDSDWNPQMDLQAMDRCHRIGQT 630 (759)
Q Consensus 603 ~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 630 (759)
. -++.-|.++....+++.++.+.+..
T Consensus 101 ~--~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 101 S--IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp C--EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred c--ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 1 1344577888888888888776543
No 276
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=38.44 E-value=52 Score=33.04 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=26.4
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCCCeEEE--ECCccHHHHH
Q 004347 215 DQMGLGKTIQTIAFLAHLKGNGLHGPYLVI--APLSTLSNWV 254 (759)
Q Consensus 215 demGlGKTl~ai~li~~l~~~~~~~~~LIV--~P~sll~~W~ 254 (759)
---|.|||..++.++..+...| .++|+| -|..-+..|.
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G--~rVlliD~D~q~~~~~~l 83 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLN--LKVLMIDKDLQATLTKDL 83 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTT--CCEEEEEECTTCHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhCC--CeEEEEeCCCCCCHHHHH
Confidence 3689999999999998887754 467764 3443344453
No 277
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=38.14 E-value=90 Score=25.99 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=40.0
Q ss_pred CCcEEEEcc------chhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEE
Q 004347 530 NHKVLVFSQ------WTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLL 588 (759)
Q Consensus 530 ~~kvLIFsq------~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Ll 588 (759)
.++|+||+. +......+..+|...|++|..++=......+..+...+.. ..+.++++
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~--~~vP~ifi 76 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNW--PTYPQLYV 76 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSC--CSSCEEEC
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCC--CCCCEEEE
Confidence 567999977 4456778888899999999999988776666666555432 34444443
No 278
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=38.13 E-value=29 Score=33.40 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=26.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
|..-.-|.|||..++.++..+...| .++|+|=.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g--~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRG--RKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcC--CeEEEEeC
Confidence 4455689999999999999888764 57888765
No 279
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=38.05 E-value=89 Score=26.87 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=47.3
Q ss_pred CcEEEEccchhHHHHHHHHHHh-cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCC-CCCCCCCEEEEe
Q 004347 531 HKVLVFSQWTKILDIMEYYFNE-KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLG-INLTAADTCILY 608 (759)
Q Consensus 531 ~kvLIFsq~~~~ld~L~~~L~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~G-INL~~a~~VI~~ 608 (759)
..+..++.....+.. ++.. ..+.++.++-.++...-.+++..++.....+.|++++...-... .....+...-++
T Consensus 46 ~~v~~~~~~~~~~~~---~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l 122 (146)
T 4dad_A 46 YRVTRTVGRAAQIVQ---RTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVL 122 (146)
T ss_dssp CEEEEECCCHHHHTT---CHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEE
T ss_pred eEEEEeCCHHHHHHH---HHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeE
Confidence 555555544333322 2222 45667777776665555566666654445566666664321110 001111122233
Q ss_pred CCCCCcchhhHHhhhhhhcC
Q 004347 609 DSDWNPQMDLQAMDRCHRIG 628 (759)
Q Consensus 609 D~~wnp~~~~Qa~gR~~RiG 628 (759)
--|+++....+++.++.+-.
T Consensus 123 ~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 123 RWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp ESSCCHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHHhhh
Confidence 34667777777777766544
No 280
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=37.92 E-value=31 Score=40.61 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=18.4
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLA 230 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~ 230 (759)
.+.+.+|.-+.|+|||..+-+++.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 455678999999999977665543
No 281
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=37.08 E-value=1e+02 Score=33.69 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=49.3
Q ss_pred hccHHHHHHHHHHHHhhC-----CCcEEEEccchhHHHHHHHHHH----hcCceEEEEeCCCCHHHHHHHHHHhhccCCC
Q 004347 512 QCGKFRLLDRLLARLFAR-----NHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQDFNDVNSS 582 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~-----~~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 582 (759)
.+||-....-.+...... +.++||.+.....+..+...+. ..|+.+..++|+.+...+...+. . .
T Consensus 32 GsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~----~ 105 (556)
T 4a2p_A 32 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI--E----D 105 (556)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH--H----H
T ss_pred CChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh--C----C
Confidence 478876544444333332 7789999998776655444444 44899999999987554433222 1 1
Q ss_pred ceEEEEeccccc----CC-C-CCCCCCEEEE
Q 004347 583 YRIFLLSTRAGG----LG-I-NLTAADTCIL 607 (759)
Q Consensus 583 ~~v~LlsT~agg----~G-I-NL~~a~~VI~ 607 (759)
..|++.++...- .| + ++...+.||+
T Consensus 106 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 106 SDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp CSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 234444333222 22 3 5677788777
No 282
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=37.06 E-value=12 Score=35.72 Aligned_cols=36 Identities=11% Similarity=0.358 Sum_probs=0.0
Q ss_pred EEEEcCcccc---cChhhHHHHHHhcCCCCc----EEEEecCC
Q 004347 317 YLVVDEGHRL---KNPKCKLLKELKYIPIGN----KLLLTGTP 352 (759)
Q Consensus 317 ~lIvDEaH~i---kn~~s~~~~~l~~l~~~~----rllLTgTP 352 (759)
+|||||||.+ ++......+.+..+...+ -++|+|.|
T Consensus 90 vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 90 IVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp EEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred EEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
No 283
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=36.99 E-value=1.5e+02 Score=24.95 Aligned_cols=91 Identities=8% Similarity=-0.009 Sum_probs=52.4
Q ss_pred CCCcEEEEccchhHHHHHHHHHHh-cCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe-cccccCCCCCCCCCEEE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNE-KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS-TRAGGLGINLTAADTCI 606 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls-T~agg~GINL~~a~~VI 606 (759)
.|..+..+......+. .+.. ..+.++.++-.++...-.+.+...+.....+.+++++ ... .... .... ..-
T Consensus 38 ~g~~v~~~~~~~~al~----~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~-~~~~-~~~ 110 (138)
T 2b4a_A 38 LGAEVTVHPSGSAFFQ----HRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRH-ELIE-SSEH-NLS 110 (138)
T ss_dssp TTCEEEEESSHHHHHH----TGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC---CCC-CSSS-CEE
T ss_pred cCCEEEEeCCHHHHHH----HHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC-CHHH-HHHH-HHh
Confidence 3666655554433333 3344 5678888887776544556677776544567777777 432 2222 2222 222
Q ss_pred EeCCCCCcchhhHHhhhhhh
Q 004347 607 LYDSDWNPQMDLQAMDRCHR 626 (759)
Q Consensus 607 ~~D~~wnp~~~~Qa~gR~~R 626 (759)
++--|+++....+++.++.+
T Consensus 111 ~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 111 YLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp EEESSCCHHHHHHHHHHTCC
T ss_pred eeeCCCCHHHHHHHHHHHHH
Confidence 34457888888888887754
No 284
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=36.95 E-value=91 Score=27.50 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=39.8
Q ss_pred CcEEEEcc------chhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEE
Q 004347 531 HKVLVFSQ------WTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLL 588 (759)
Q Consensus 531 ~kvLIFsq------~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Ll 588 (759)
.+|+||+. +......+..+|...|++|..++=....+.+..+...... ..+.++++
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~--~tvP~VfI 96 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANW--PTFPQLWV 96 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTC--CSSCEEEE
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCC--CCcCEEEE
Confidence 47999976 5677888999999999999998877666666665554432 34444444
No 285
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=36.92 E-value=24 Score=34.89 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=22.6
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCeEEE
Q 004347 214 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 244 (759)
Q Consensus 214 ademGlGKTl~ai~li~~l~~~~~~~~~LIV 244 (759)
+---|.|||..++.++..+...| .++|+|
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~G--~~Vlli 35 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAMG--KTIMVV 35 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTTT--CCEEEE
T ss_pred ecCCCCcHHHHHHHHHHHHHHCC--CcEEEE
Confidence 34679999999999998888654 467765
No 286
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=36.51 E-value=31 Score=28.82 Aligned_cols=38 Identities=13% Similarity=0.334 Sum_probs=31.2
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCce-EEEEeCCCC
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVR 565 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~l~G~~~ 565 (759)
..+..++|||..-.........|...|+. +..++|++.
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 46788999999877777888889999995 888899765
No 287
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=36.38 E-value=79 Score=29.89 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=48.2
Q ss_pred hccHHHH-HHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHH----hcCceEEEEeCCCCHHHHHHHHHHhhccCCCce
Q 004347 512 QCGKFRL-LDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 584 (759)
Q Consensus 512 ~s~K~~~-L~~lL~~l~~--~~~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 584 (759)
.+||-.. +.-++..+.. .+.++||.+.....+..+...+. ..++.+..++|+.+..+.... +. ...
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~----~~~ 133 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR----DAQ 133 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT----TCS
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC----CCC
Confidence 4788765 5555555432 35689999998887666555554 347889999998875443322 22 134
Q ss_pred EEEEecc-cc-----cCCCCCCCCCEEEE
Q 004347 585 IFLLSTR-AG-----GLGINLTAADTCIL 607 (759)
Q Consensus 585 v~LlsT~-ag-----g~GINL~~a~~VI~ 607 (759)
| +++|. .. ...+++...+.||+
T Consensus 134 i-iv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 134 I-VVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp E-EEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred E-EEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 4 45543 21 23456666777665
No 288
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=36.26 E-value=81 Score=27.51 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCcEEEEccchhHHHHHHHHHHhcCceEE
Q 004347 530 NHKVLVFSQWTKILDIMEYYFNEKGYEVC 558 (759)
Q Consensus 530 ~~kvLIFsq~~~~ld~L~~~L~~~g~~~~ 558 (759)
+.+|||..........+...|...|+.+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~ 35 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNII 35 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEE
Confidence 45677777777777777777777776654
No 289
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=36.09 E-value=37 Score=33.37 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=26.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
|..-.-|.|||..++.++..+...| .++|+|=.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g--~~VlliD~ 39 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLG--HDVTIVDA 39 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCC--CcEEEEEC
Confidence 4566789999999999999888764 57888763
No 290
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=35.67 E-value=53 Score=34.64 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=34.0
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVN 255 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll~~W~~ 255 (759)
.+.+.++.-.+|+|||..+-.++..+... .++++|+=|..-...+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~ 80 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ--GSRVIIIDPEREYKEMCR 80 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEESSCCSHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC--CCEEEEEeCCcCHHHHHH
Confidence 46678899999999998877777666554 357888888765444433
No 291
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=35.59 E-value=23 Score=35.10 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=23.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
+..---|.|||..++.++..+. .| .++|+|=
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la-~g--~~VlliD 62 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS-KN--NKVLLID 62 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT-TT--SCEEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHH-CC--CCEEEEE
Confidence 3445689999999999988887 54 5777663
No 292
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=35.09 E-value=50 Score=34.56 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=20.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
..+.+|.-++|+|||..|-++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999998888776654
No 293
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=34.97 E-value=35 Score=33.39 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=25.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
|..---|.|||..++.++..+...| .++|+|=-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g--~~VlliD~ 39 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKG--KKTVVIDF 39 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC--CcEEEEEC
Confidence 4455689999999999999988764 47777643
No 294
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=34.81 E-value=35 Score=37.79 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=26.2
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHH
Q 004347 190 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 190 LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~ 231 (759)
+.+.++..+.+.+ ..|.+.+++-++|+|||...-+++..
T Consensus 245 ~~~~~l~~l~~~v---~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 245 VPSGVLAYLWLAI---EHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp SCHHHHHHHHHHH---HTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHH---hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4444555554444 56778899999999999765555443
No 295
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=34.76 E-value=23 Score=39.13 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=23.0
Q ss_pred HHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 201 LISLWQNGLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 201 l~~~~~~~~~~ILademGlGKTl~ai~li~~l 232 (759)
+......+.+.+|..++|+|||..|-++...+
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 33333457889999999999998776665443
No 296
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=34.70 E-value=32 Score=29.57 Aligned_cols=72 Identities=4% Similarity=0.012 Sum_probs=34.2
Q ss_pred CceEEEEeCCCCH--HHHHHHHHHhhccCCCceEEEEeccccc----CCCCCCCCCEEEEeCCCCCcchhhHHhhhhhhc
Q 004347 554 GYEVCRIDGSVRL--DERKRQIQDFNDVNSSYRIFLLSTRAGG----LGINLTAADTCILYDSDWNPQMDLQAMDRCHRI 627 (759)
Q Consensus 554 g~~~~~l~G~~~~--~~R~~~i~~F~~~~~~~~v~LlsT~agg----~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 627 (759)
.+.++.++-.++. ..-.+.+..++.....+.|+++|...-. ..+. .+|+.+ +--|+++....+++.++.+-
T Consensus 50 ~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~-~ga~~~--l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 50 DAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMR-ASAADF--IEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp TEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHH-TTCSEE--EESSBCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH-cChHHh--eeCCCCHHHHHHHHHHHHhc
Confidence 3455566655554 4455555555543345555555543211 0111 112222 23456666666666666554
Q ss_pred C
Q 004347 628 G 628 (759)
Q Consensus 628 G 628 (759)
+
T Consensus 127 ~ 127 (136)
T 3kto_A 127 A 127 (136)
T ss_dssp H
T ss_pred c
Confidence 3
No 297
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=34.41 E-value=26 Score=28.89 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=31.3
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCC
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 565 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~ 565 (759)
.+.+++|||..-.........|...|+++..++|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 5678999998877777888889999999999999754
No 298
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=33.97 E-value=29 Score=35.76 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=23.3
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 214 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 214 ademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
+--=|.|||.+++-+...|...| .++|+|=
T Consensus 54 aGKGGVGKTTtavNLA~aLA~~G--kkVllID 83 (314)
T 3fwy_A 54 YGKGGIGKSTTSSNLSAAFSILG--KRVLQIG 83 (314)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred ECCCccCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 44568999999999999998875 4666663
No 299
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=33.56 E-value=29 Score=35.23 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=23.8
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEE
Q 004347 213 LADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 244 (759)
Q Consensus 213 LademGlGKTl~ai~li~~l~~~~~~~~~LIV 244 (759)
++---|.|||..++.++..+...| .++|+|
T Consensus 46 v~~KGGvGKTT~a~nLA~~La~~G--~~Vlli 75 (307)
T 3end_A 46 VYGKGGIGKSTTSSNLSAAFSILG--KRVLQI 75 (307)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EECCCCccHHHHHHHHHHHHHHCC--CeEEEE
Confidence 445789999999999999888764 466666
No 300
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=33.49 E-value=33 Score=33.87 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=20.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
..+.+|.-+.|+|||..+-+++..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4567899999999999888877654
No 301
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=33.49 E-value=29 Score=34.82 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=22.7
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCeEEE
Q 004347 214 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 244 (759)
Q Consensus 214 ademGlGKTl~ai~li~~l~~~~~~~~~LIV 244 (759)
+---|.|||..++.++..+...| .++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~G--~rVlli 36 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEMG--KKVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred eCCCcCcHHHHHHHHHHHHHHCC--CeEEEE
Confidence 44679999999999999888764 466665
No 302
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=33.22 E-value=2e+02 Score=30.48 Aligned_cols=53 Identities=19% Similarity=0.116 Sum_probs=31.5
Q ss_pred HHHHHH-HHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhC----CCCCCeEEEECCcc
Q 004347 197 GVKWLI-SLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN----GLHGPYLVIAPLST 249 (759)
Q Consensus 197 gv~~l~-~~~~~~~~~ILademGlGKTl~ai~li~~l~~~----~~~~~~LIV~P~sl 249 (759)
.+.+++ .-+..|.-..|+-+.|+|||..+..++...... +..++++++.-...
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 355554 122334445788999999998877665443221 13456788776543
No 303
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=33.09 E-value=59 Score=34.87 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=31.3
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEE
Q 004347 189 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 244 (759)
Q Consensus 189 ~LrpyQ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV 244 (759)
.+.+.+...+..++ ...+...+|.-++|+|||...-+++..+... .+.++++
T Consensus 150 g~~~~~~~~L~~l~--~~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ 201 (418)
T 1p9r_A 150 GMTAHNHDNFRRLI--KRPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTV 201 (418)
T ss_dssp CCCHHHHHHHHHHH--TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEE
T ss_pred CCCHHHHHHHHHHH--HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEe
Confidence 34455555565553 2233334788999999998877766655332 3555554
No 304
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=33.08 E-value=1.2e+02 Score=33.39 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=56.3
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecc
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTR 591 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~ 591 (759)
.+||-. .-++..+. .+.++||.+.....+.-....|...|+++..++|+.+..++......+..+ ...++++++.
T Consensus 50 GsGKTl--~~~lp~l~-~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~--~~~ilv~Tpe 124 (523)
T 1oyw_A 50 GGGKSL--CYQIPALL-LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTG--QIRLLYIAPE 124 (523)
T ss_dssp HHHHHH--HHHHHHHH-SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT--CCSEEEECHH
T ss_pred CcHHHH--HHHHHHHH-hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEECHH
Confidence 467763 22344333 356899999999988888888888899999999999998888888888763 4455666654
Q ss_pred cc
Q 004347 592 AG 593 (759)
Q Consensus 592 ag 593 (759)
..
T Consensus 125 ~l 126 (523)
T 1oyw_A 125 RL 126 (523)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 305
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=32.40 E-value=40 Score=33.28 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=25.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
+..---|.|||..++.++..+...| .++|+|=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G--~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQG--KKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 4455689999999999999888764 4788775
No 306
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=32.40 E-value=29 Score=36.50 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=17.3
Q ss_pred HHhhcCCCe-EEE-cCCCCcHHHHHHH
Q 004347 203 SLWQNGLNG-ILA-DQMGLGKTIQTIA 227 (759)
Q Consensus 203 ~~~~~~~~~-ILa-demGlGKTl~ai~ 227 (759)
..+.+|.+| |+| -.+|+|||.++.+
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHHB
T ss_pred hhccCCceeEEEeeCCCCCCCCEEEec
Confidence 444557776 554 5599999988754
No 307
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=31.74 E-value=1.1e+02 Score=31.45 Aligned_cols=19 Identities=32% Similarity=0.281 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHHHHHhC
Q 004347 217 MGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 217 mGlGKTl~ai~li~~l~~~ 235 (759)
=|+|||=.++.++..|...
T Consensus 47 GGTGKTP~vi~L~~~L~~~ 65 (315)
T 4ehx_A 47 GGSGKTSFVMYLADLLKDK 65 (315)
T ss_dssp SCCSHHHHHHHHHHHTTTS
T ss_pred CCCChHHHHHHHHHHHhhc
Confidence 5899999999999888643
No 308
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=31.23 E-value=2.3e+02 Score=23.90 Aligned_cols=17 Identities=6% Similarity=-0.046 Sum_probs=8.5
Q ss_pred CCCCCcchhhHHhhhhh
Q 004347 609 DSDWNPQMDLQAMDRCH 625 (759)
Q Consensus 609 D~~wnp~~~~Qa~gR~~ 625 (759)
.-|.++....+++.++.
T Consensus 106 ~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 106 MKSATEQVLITIVEMAL 122 (140)
T ss_dssp ETTCCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 34455555555554443
No 309
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=31.22 E-value=88 Score=25.10 Aligned_cols=57 Identities=12% Similarity=-0.041 Sum_probs=38.5
Q ss_pred cEEEEccc-hhHH------HHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEE
Q 004347 532 KVLVFSQW-TKIL------DIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLL 588 (759)
Q Consensus 532 kvLIFsq~-~~~l------d~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Ll 588 (759)
+|+||+.. .... .....+|...|++|..++=....+.|..+......+...+.++++
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi 66 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN 66 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEE
Confidence 57788543 2334 678888999999999999888877777776665421224444444
No 310
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=31.21 E-value=56 Score=27.16 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=31.3
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCce-EEEEeCCCC
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVR 565 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~l~G~~~ 565 (759)
..+..++|||..-.........|...|++ +..++|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 46788999999877777788888888995 888999865
No 311
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=31.19 E-value=35 Score=27.70 Aligned_cols=35 Identities=17% Similarity=0.491 Sum_probs=29.3
Q ss_pred CcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCC
Q 004347 531 HKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 565 (759)
Q Consensus 531 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~ 565 (759)
.+++|||+.-.........|...|+++..++|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999877777788888889999778888764
No 312
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=30.90 E-value=38 Score=36.40 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=30.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCccH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTL 250 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~sll 250 (759)
..+.++.-.+|+|||...-.++..+...+ .+++|+=|+.-.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g--~~viv~Dpkge~ 93 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRG--DRMVIVDPNGDM 93 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTT--CEEEEEEETTHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEeCCCch
Confidence 56788888899999998666677766654 477888887644
No 313
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=30.84 E-value=58 Score=35.41 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=23.4
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~ 235 (759)
...+.+|.-+.|+|||..+-+++..+...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~ 228 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINN 228 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSS
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34567999999999999998888877653
No 314
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=30.58 E-value=1.3e+02 Score=33.33 Aligned_cols=46 Identities=22% Similarity=0.141 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHhhhhc-CccEEEEcCcccccChhhHHHHHHhcCCCCcEEEEecC
Q 004347 298 SYEVALSDARKYLRHY-NWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGT 351 (759)
Q Consensus 298 tye~l~~~~~~~l~~~-~~~~lIvDEaH~ikn~~s~~~~~l~~l~~~~rllLTgT 351 (759)
+.+.+...+...+... +.-+||+|.+|.. ..+..+....++++|.-
T Consensus 219 ~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--------~~l~~l~~~~~ilvTsR 265 (591)
T 1z6t_A 219 NIEEAKDRLRILMLRKHPRSLLILDDVWDS--------WVLKAFDSQCQILLTTR 265 (591)
T ss_dssp SHHHHHHHHHHHHHHTCTTCEEEEEEECCH--------HHHHTTCSSCEEEEEES
T ss_pred CHHHHHHHHHHHHccCCCCeEEEEeCCCCH--------HHHHHhcCCCeEEEECC
Confidence 3444444444455442 3468999999863 23455677778888753
No 315
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=30.26 E-value=28 Score=29.16 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=30.1
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCC
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 565 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~ 565 (759)
.+..++|||..-........+|...|++...+.|++.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 5678999998766666777888999999888988764
No 316
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=30.11 E-value=53 Score=30.26 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=24.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEE
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 244 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV 244 (759)
...+|.-.+|+|||.++-.+...+...+ +++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~--~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEG--YRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEe
Confidence 3456778899999999888877776543 345444
No 317
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=29.70 E-value=38 Score=27.97 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=31.1
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCC
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 565 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~ 565 (759)
.+..++|||..-.........|...|+++..++|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 5678999999876777788888899999999999754
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=29.51 E-value=48 Score=30.41 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=21.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCC
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNG 236 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~ 236 (759)
+...+|.-.+|+|||.++-.+...+...|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 34467888899999998887777766543
No 319
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=29.50 E-value=58 Score=28.97 Aligned_cols=38 Identities=8% Similarity=-0.023 Sum_probs=29.2
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCc-eEEEEeCCCC
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGY-EVCRIDGSVR 565 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~-~~~~l~G~~~ 565 (759)
..+.+++|||+.-.........|...|+ ++..++|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4578899999886666677888888999 5889999875
No 320
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=29.13 E-value=54 Score=33.24 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=24.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
|..-..|.|||..++.++..+...| .++|+|-
T Consensus 109 vts~kgG~GKTtva~nLA~~lA~~G--~rVLLID 140 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIAQSD--QKVLFID 140 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHhCC--CcEEEEE
Confidence 3444579999999999998888754 5777775
No 321
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=28.92 E-value=53 Score=31.64 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=24.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
+..---|.|||..++.++..+... ...++|+|=
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~-~g~~VlliD 41 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQE-PDIHVLAVD 41 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTS-TTCCEEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhC-cCCCEEEEE
Confidence 445567999999999998888765 124666664
No 322
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=28.62 E-value=1.1e+02 Score=25.77 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=38.5
Q ss_pred CCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCC-CC--CCCCEEE
Q 004347 530 NHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGI-NL--TAADTCI 606 (759)
Q Consensus 530 ~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GI-NL--~~a~~VI 606 (759)
|..+..+......+..+ ....+.++.++-.++...-.+.+...+.....+.|++++......-. .. .+|+.+|
T Consensus 27 g~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l 102 (136)
T 1mvo_A 27 GYDVITASDGEEALKKA----ETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYM 102 (136)
T ss_dssp TCEEEEESSHHHHHHHH----HHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEE
T ss_pred CcEEEEecCHHHHHHHH----hhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEE
Confidence 45554444333333322 23345666666554432233444444432234455555443211100 00 1222222
Q ss_pred EeCCCCCcchhhHHhhhhhh
Q 004347 607 LYDSDWNPQMDLQAMDRCHR 626 (759)
Q Consensus 607 ~~D~~wnp~~~~Qa~gR~~R 626 (759)
--|+++....+++.++.+
T Consensus 103 --~KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 103 --TKPFSPREVNARVKAILR 120 (136)
T ss_dssp --ESSCCHHHHHHHHHHHHH
T ss_pred --ECCCCHHHHHHHHHHHHH
Confidence 235566666666665554
No 323
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=28.59 E-value=59 Score=26.84 Aligned_cols=90 Identities=11% Similarity=0.148 Sum_probs=41.2
Q ss_pred CCCcEE-EEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccccc----CCCCCCCCC
Q 004347 529 RNHKVL-VFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGG----LGINLTAAD 603 (759)
Q Consensus 529 ~~~kvL-IFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg----~GINL~~a~ 603 (759)
.|..++ .++.....+..+ ....+.++.+|-.++...-.+.++..+...+...++++|..... ..+. .+|+
T Consensus 25 ~g~~vv~~~~~~~~a~~~~----~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~-~g~~ 99 (120)
T 1tmy_A 25 AGYEVAGEATNGREAVEKY----KELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIK-AGAK 99 (120)
T ss_dssp TTCEEEEEESSHHHHHHHH----HHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHH-TTCC
T ss_pred cCcEEEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHH-hCcc
Confidence 455533 333333333333 23346677777666543334445544432344556666543211 0111 1222
Q ss_pred EEEEeCCCCCcchhhHHhhhhh
Q 004347 604 TCILYDSDWNPQMDLQAMDRCH 625 (759)
Q Consensus 604 ~VI~~D~~wnp~~~~Qa~gR~~ 625 (759)
.. +.-|+++....+++.++.
T Consensus 100 ~~--l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 100 DF--IVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EE--EESSCCHHHHHHHHHHHC
T ss_pred ee--EeCCCCHHHHHHHHHHHh
Confidence 22 234666666666666543
No 324
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=28.58 E-value=79 Score=26.37 Aligned_cols=72 Identities=8% Similarity=0.115 Sum_probs=31.5
Q ss_pred hcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccccc----CCCCCCCCCEEEEeCCCCCcchhhHHhhhhhh
Q 004347 552 EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGG----LGINLTAADTCILYDSDWNPQMDLQAMDRCHR 626 (759)
Q Consensus 552 ~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg----~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~R 626 (759)
.....++.+|-.++...-.+.+...+...+.+.|+++|..... ..+. .+|+.. +.-|+++....+++.++.+
T Consensus 45 ~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~-~ga~~~--l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMK-AGAVDF--IEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp GCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHH-TTCSEE--EESSCCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHH-hCHHHh--eeCCCCHHHHHHHHHHHHH
Confidence 3345666666554432333444444332234455555543211 0111 112222 2345666666666666554
No 325
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=28.50 E-value=1.1e+02 Score=30.32 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=34.3
Q ss_pred hcCCCeEEEcCCCCcHHHHHHHHHHHHHhCC---------CCCCeEEEECCccHHHHHHHHH
Q 004347 206 QNGLNGILADQMGLGKTIQTIAFLAHLKGNG---------LHGPYLVIAPLSTLSNWVNEIS 258 (759)
Q Consensus 206 ~~~~~~ILademGlGKTl~ai~li~~l~~~~---------~~~~~LIV~P~sll~~W~~E~~ 258 (759)
..|.-.+|+-..|+|||..+..++..+. .| ..++++++.......+....+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~ 88 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLH 88 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCHHHHHHHHH
Confidence 3466678889999999999888877554 33 1357777776555544433333
No 326
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.44 E-value=55 Score=33.63 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=26.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
+..---|.|||..|.+++..+...| .++|+|-.
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~G--~rVLlvD~ 50 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARSG--KKTLVIST 50 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCC--CcEEEEeC
Confidence 5666789999999999998888764 57888775
No 327
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=28.28 E-value=55 Score=28.69 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=16.8
Q ss_pred CcEEEEccchhHHHHHHHHHHhcCceEE
Q 004347 531 HKVLVFSQWTKILDIMEYYFNEKGYEVC 558 (759)
Q Consensus 531 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~ 558 (759)
.++||..........+...|...|+.+.
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~ 31 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVS 31 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEE
Confidence 4566666666666666666666565543
No 328
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=28.18 E-value=79 Score=24.83 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=27.6
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCce-EEEEeCCCC
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVR 565 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~l~G~~~ 565 (759)
..+.+++|||+.-.........|...|++ +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 45778999999866677778888888985 5455 6644
No 329
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=27.85 E-value=99 Score=33.75 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=38.4
Q ss_pred hccHHHHHHHHHHHHhhC-----CCcEEEEccchhHHHHHHHHH----HhcCceEEEEeCCCCHHHH
Q 004347 512 QCGKFRLLDRLLARLFAR-----NHKVLVFSQWTKILDIMEYYF----NEKGYEVCRIDGSVRLDER 569 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~-----~~kvLIFsq~~~~ld~L~~~L----~~~g~~~~~l~G~~~~~~R 569 (759)
.+||-....-.+...... +.++||.+.....+..+...+ ...|+.+..++|+.+...+
T Consensus 29 GsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 29 GCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVS 95 (555)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSC
T ss_pred CChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhh
Confidence 478876544444333332 788999999877655444444 4448999999999875443
No 330
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=27.81 E-value=1.3e+02 Score=24.40 Aligned_cols=57 Identities=5% Similarity=-0.090 Sum_probs=39.7
Q ss_pred CcEEEEccc-hhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEE
Q 004347 531 HKVLVFSQW-TKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLL 588 (759)
Q Consensus 531 ~kvLIFsq~-~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Ll 588 (759)
.+|.||+.. .........+|..+|++|..++=....+.++.+.+. +.+...+.++++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~-~~G~~tVP~I~i 61 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSV-NGGNRTVPTVKF 61 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHH-SSSSSCSCEEEE
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHH-cCCCCEeCEEEE
Confidence 358888643 345677888999999999999988887777666544 333445555554
No 331
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=27.73 E-value=40 Score=30.93 Aligned_cols=25 Identities=28% Similarity=0.101 Sum_probs=20.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
+...+|.-.+|+|||..+-.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567888899999998887776655
No 332
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=27.30 E-value=73 Score=26.33 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=10.6
Q ss_pred cEEEEccchhHHHHHHHHHHhcCce
Q 004347 532 KVLVFSQWTKILDIMEYYFNEKGYE 556 (759)
Q Consensus 532 kvLIFsq~~~~ld~L~~~L~~~g~~ 556 (759)
++||..........+...|...|+.
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~ 31 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFT 31 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCce
Confidence 3444444444444444444444443
No 333
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=27.26 E-value=1.2e+02 Score=35.29 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=36.4
Q ss_pred hccHHHHHHHHHHHHhhC-----CCcEEEEccchhHHHHHHHHH----HhcCceEEEEeCCCCHHHHH
Q 004347 512 QCGKFRLLDRLLARLFAR-----NHKVLVFSQWTKILDIMEYYF----NEKGYEVCRIDGSVRLDERK 570 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~-----~~kvLIFsq~~~~ld~L~~~L----~~~g~~~~~l~G~~~~~~R~ 570 (759)
.+||-....-.+...... +.++||.+.....+..+...+ ...|+.+..++|+.+...+.
T Consensus 273 GsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 340 (797)
T 4a2q_A 273 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSV 340 (797)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CH
T ss_pred CChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhH
Confidence 478876544444433333 789999999887665544444 44499999999999765443
No 334
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=27.24 E-value=74 Score=33.05 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=26.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
.+..---|.|||..+.+++..+...| .++|+|--
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G--~rVLlvD~ 62 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKG--LKVVIVST 62 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSS--CCEEEEEC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 35666799999999999998888764 57777763
No 335
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=27.22 E-value=42 Score=31.45 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=20.9
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l 232 (759)
.+...+|.-.+|+|||..+-.+...+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45667889999999998887777665
No 336
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=27.01 E-value=3.4e+02 Score=25.89 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=51.9
Q ss_pred hccHHHH-HHHHHHHHhh-----------CCCcEEEEccchhHHHHHHHHHH----hcCceEEEEeCCCCHHHHHHHHHH
Q 004347 512 QCGKFRL-LDRLLARLFA-----------RNHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQD 575 (759)
Q Consensus 512 ~s~K~~~-L~~lL~~l~~-----------~~~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~ 575 (759)
.+||-.. +.-++..+.. .+.++||.+.....+..+...+. ..++.++.+.|+.+.......+
T Consensus 70 GsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 147 (253)
T 1wrb_A 70 GSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV-- 147 (253)
T ss_dssp TSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH--
T ss_pred CChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh--
Confidence 4778653 4444444432 23589999999887665555544 3467888899988754433322
Q ss_pred hhccCCCceEEEEecc-cc-----cCCCCCCCCCEEEE
Q 004347 576 FNDVNSSYRIFLLSTR-AG-----GLGINLTAADTCIL 607 (759)
Q Consensus 576 F~~~~~~~~v~LlsT~-ag-----g~GINL~~a~~VI~ 607 (759)
. ..+.| +++|. .. ...+++...+.||+
T Consensus 148 -~---~~~~I-vv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 148 -Q---MGCHL-LVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp -S---SCCSE-EEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred -C---CCCCE-EEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 2 23344 45543 22 12356677777766
No 337
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=26.99 E-value=5.4e+02 Score=28.05 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=22.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEE
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 244 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV 244 (759)
.|.-..|+|||..+-.++..+... .|.++|+
T Consensus 297 ~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~ 327 (503)
T 2yhs_A 297 LMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLA 327 (503)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred EEECCCcccHHHHHHHHHHHhhhc--CCeEEEe
Confidence 566779999998876666655543 3677776
No 338
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=26.85 E-value=35 Score=35.77 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=22.0
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCCCeEEE
Q 004347 215 DQMGLGKTIQTIAFLAHLKGNGLHGPYLVI 244 (759)
Q Consensus 215 demGlGKTl~ai~li~~l~~~~~~~~~LIV 244 (759)
.--|.|||..++.+...+...| .++|+|
T Consensus 9 ~KGGvGKTT~a~nLA~~LA~~G--~rVLlI 36 (361)
T 3pg5_A 9 NKGGVGKTTLSTNVAHYFALQG--KRVLYV 36 (361)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCC--CcEEEE
Confidence 3468999999999988887753 577777
No 339
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=26.52 E-value=59 Score=32.44 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=22.8
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 215 DQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 215 demGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
-..|.|||..++.++..+...| .++|+|=
T Consensus 90 ~kgG~GKTt~a~nLA~~lA~~G--~rVLLID 118 (271)
T 3bfv_A 90 EAPGAGKSTIAANLAVAYAQAG--YKTLIVD 118 (271)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCC--CeEEEEe
Confidence 4579999999999998888754 4777763
No 340
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=26.50 E-value=62 Score=26.69 Aligned_cols=96 Identities=6% Similarity=0.039 Sum_probs=45.5
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccC-CCCCCCCCEEEE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGL-GINLTAADTCIL 607 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~-GINL~~a~~VI~ 607 (759)
.|..+..+......+..+ ....+.++.++-.++...-.+.+...+...+.+.++++|...... -...-.+...=+
T Consensus 26 ~~~~v~~~~~~~~~~~~~----~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 101 (124)
T 1dc7_A 26 AGLTCTTFENGNEVLAAL----ASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDY 101 (124)
T ss_dssp TTCCCEECCCTTHHHHHS----SSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCSTTSTTTTSSCTTCCCCC
T ss_pred CCcEEEEeCCHHHHHHHH----hcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHhcCcceE
Confidence 345555444443333322 333456667776666544434444444323345555555432211 111111111113
Q ss_pred eCCCCCcchhhHHhhhhhhcC
Q 004347 608 YDSDWNPQMDLQAMDRCHRIG 628 (759)
Q Consensus 608 ~D~~wnp~~~~Qa~gR~~RiG 628 (759)
+.-|+++....+++.++.+..
T Consensus 102 l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 102 LPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp BCSSCCHHHHHHHHHHHHHHT
T ss_pred eeCCCCHHHHHHHHHHHHHhh
Confidence 455778888778777776543
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=26.44 E-value=52 Score=30.09 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=20.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
+...+|.-.+|+|||..+-.+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 5567899999999998877766554
No 342
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=26.28 E-value=73 Score=29.02 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=36.4
Q ss_pred HHHHHhCCCCCCeEEEECCccHHHHH-HHHHHhCCCceEEEEeCChh--HHHHHHHhcCCCCCCCCCCEEEec
Q 004347 229 LAHLKGNGLHGPYLVIAPLSTLSNWV-NEISRFVPSVSAIIYHGSKK--ERDEIRRKHMPRAIGPKFPIVVTS 298 (759)
Q Consensus 229 i~~l~~~~~~~~~LIV~P~sll~~W~-~E~~~~~p~~~~~~~~g~~~--~r~~~~~~~~~~~~~~~~~vvItt 298 (759)
+..+......+++||.|+..-...+. ..+... +..+..+||... .|......+ ..+...|+|+|
T Consensus 25 L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f----~~g~~~vLvaT 91 (175)
T 2rb4_A 25 LCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRF----RDGKEKVLITT 91 (175)
T ss_dssp HHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHH----HTTSCSEEEEC
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHH----HcCCCeEEEEe
Confidence 33444444557899999976544433 334433 467888888643 333332222 12466788887
No 343
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=25.97 E-value=60 Score=27.79 Aligned_cols=94 Identities=6% Similarity=0.080 Sum_probs=57.4
Q ss_pred CCCcEEEEccchhHHHHHHHHHHh-cCceEEEEeCCCC-HHHHHHHHHHhhc--cCCCceEEEEeccccc----CCCCCC
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNE-KGYEVCRIDGSVR-LDERKRQIQDFND--VNSSYRIFLLSTRAGG----LGINLT 600 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~-~g~~~~~l~G~~~-~~~R~~~i~~F~~--~~~~~~v~LlsT~agg----~GINL~ 600 (759)
.|..+..++.....++ .+.. ..+.++.+|-.++ ...-.+++...+. ....+.|+++|...-. ..+. .
T Consensus 28 ~~~~v~~~~~~~~a~~----~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~-~ 102 (140)
T 3lua_A 28 GEYDFIEVENLKKFYS----IFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALK-F 102 (140)
T ss_dssp CCCEEEEECSHHHHHT----TTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHH-S
T ss_pred cCccEEEECCHHHHHH----HHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHH-c
Confidence 4777776655444333 3344 5678889998888 7777777777765 4456777777754211 1111 1
Q ss_pred CCCEEEEeCCCCCcchhhHHhhhhhhcCC
Q 004347 601 AADTCILYDSDWNPQMDLQAMDRCHRIGQ 629 (759)
Q Consensus 601 ~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ 629 (759)
+++.+ +--|.++....+++.++.+-+.
T Consensus 103 g~~~~--l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 103 KVSDY--ILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp CCSEE--EESSCCTTHHHHHHHHHHCC--
T ss_pred CCCEE--EECCCCHHHHHHHHHHHHHhcc
Confidence 23333 3357888888888888876543
No 344
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=25.82 E-value=69 Score=32.29 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=24.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
|..-..|.|||..++.++..+...| .++|+|=
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~~G--~rVLLID 128 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQTN--KRVLLID 128 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC--CCEEEEe
Confidence 4555689999999999988888754 5777774
No 345
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=25.77 E-value=66 Score=28.13 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=18.3
Q ss_pred CCcEEEEccchhHHHHHHHHHHhcCceEE
Q 004347 530 NHKVLVFSQWTKILDIMEYYFNEKGYEVC 558 (759)
Q Consensus 530 ~~kvLIFsq~~~~ld~L~~~L~~~g~~~~ 558 (759)
..+|||..........+..+|...|+.+.
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~ 42 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLH 42 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEE
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEE
Confidence 34666666666666666666666665544
No 346
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=25.59 E-value=90 Score=26.24 Aligned_cols=94 Identities=10% Similarity=0.046 Sum_probs=47.4
Q ss_pred CCCcEE-EEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCC-C--CCCCE
Q 004347 529 RNHKVL-VFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGIN-L--TAADT 604 (759)
Q Consensus 529 ~~~kvL-IFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GIN-L--~~a~~ 604 (759)
.|..++ .++.....+..+. ...+..+.++-.++...-.+.+...+...+...|+++|...-..-.. . .+++.
T Consensus 24 ~g~~v~~~~~~~~~a~~~~~----~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 99 (134)
T 3f6c_A 24 NDIEILAELTEGGSAVQRVE----TLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANG 99 (134)
T ss_dssp TTEEEEEEESSSTTHHHHHH----HHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSE
T ss_pred CCcEEEEEcCCHHHHHHHHH----hcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCE
Confidence 355555 4444444444443 33567777776665444455555555444556666666543211110 0 12333
Q ss_pred EEEeCCCCCcchhhHHhhhhhhcC
Q 004347 605 CILYDSDWNPQMDLQAMDRCHRIG 628 (759)
Q Consensus 605 VI~~D~~wnp~~~~Qa~gR~~RiG 628 (759)
++ .-|.++....+++.++.+-+
T Consensus 100 ~l--~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 100 FV--SKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp EE--EGGGCTHHHHHHHHHHHTTC
T ss_pred EE--eCCCCHHHHHHHHHHHHCCC
Confidence 32 24567777777777776544
No 347
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=25.51 E-value=45 Score=29.71 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=30.6
Q ss_pred CCCcEEEEccch--hHHHHHHHHHHhcCceEEEEeCCCC
Q 004347 529 RNHKVLVFSQWT--KILDIMEYYFNEKGYEVCRIDGSVR 565 (759)
Q Consensus 529 ~~~kvLIFsq~~--~~ld~L~~~L~~~g~~~~~l~G~~~ 565 (759)
.+.+|+|||..- .........|...|+++..++|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 467899999986 3567777888899999999999865
No 348
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=25.37 E-value=1.8e+02 Score=24.96 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=14.9
Q ss_pred ceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe
Q 004347 555 YEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS 589 (759)
Q Consensus 555 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls 589 (759)
+.++.++-.++...-.+++...+...+.+.|++++
T Consensus 49 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 83 (151)
T 3kcn_A 49 FSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLT 83 (151)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEE
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEE
Confidence 45555555444333333333333323344444444
No 349
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=25.35 E-value=2.8e+02 Score=29.37 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=56.1
Q ss_pred hccHHH-HHHHHHHHHhhC-------CCcEEEEccchhHHHHHHHHHHh----cCceEEEEeCCCCHHHHHHHHHHhhcc
Q 004347 512 QCGKFR-LLDRLLARLFAR-------NHKVLVFSQWTKILDIMEYYFNE----KGYEVCRIDGSVRLDERKRQIQDFNDV 579 (759)
Q Consensus 512 ~s~K~~-~L~~lL~~l~~~-------~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~ 579 (759)
.|||-. ++.-++..+... +.++||.+..+..+..+...+.. .++.++.++|+.+.......+ ..
T Consensus 103 GsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~- 178 (434)
T 2db3_A 103 GSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI---TR- 178 (434)
T ss_dssp TSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---TT-
T ss_pred CCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh---hc-
Confidence 478876 455566655443 45899999998877666665554 467888999999865544333 22
Q ss_pred CCCceEEEEecc-cc----c-CCCCCCCCCEEEE
Q 004347 580 NSSYRIFLLSTR-AG----G-LGINLTAADTCIL 607 (759)
Q Consensus 580 ~~~~~v~LlsT~-ag----g-~GINL~~a~~VI~ 607 (759)
++.| +++|. .. . ..+++...+.||+
T Consensus 179 --~~~I-vv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 179 --GCHV-VIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp --CCSE-EEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred --CCCE-EEEChHHHHHHHHhCCcccccCCeEEE
Confidence 3444 55553 21 1 2356777887776
No 350
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=25.12 E-value=53 Score=32.92 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=28.2
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE--C-CccHHHHHH
Q 004347 214 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA--P-LSTLSNWVN 255 (759)
Q Consensus 214 ademGlGKTl~ai~li~~l~~~~~~~~~LIV~--P-~sll~~W~~ 255 (759)
.---|.|||..++.++..+...| .++|+|= | ...+..|..
T Consensus 11 s~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 11 NEKGGAGKSTIAVHLVTALLYGG--AKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCCCHHHHhC
Confidence 34579999999999999888764 4677654 3 344555654
No 351
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=25.05 E-value=2.3e+02 Score=26.94 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=46.4
Q ss_pred hccHHHH-HHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHHh----cCceEEEEeCCCCHHHHHHHHHHhhccCCCce
Q 004347 512 QCGKFRL-LDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNE----KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 584 (759)
Q Consensus 512 ~s~K~~~-L~~lL~~l~~--~~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 584 (759)
.+||-.. +.-++..+.. .+.++||.+.....+..+...+.. .++.+..+.|+.+.... ...+.. ....
T Consensus 77 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~--~~~~ 151 (237)
T 3bor_A 77 GTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQA--EAPH 151 (237)
T ss_dssp SHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC------------------CCCS
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhc--CCCC
Confidence 4677654 4444444332 456899999988877666665544 36788888887764332 222332 2234
Q ss_pred EEEEecc-----ccc-CCCCCCCCCEEEE
Q 004347 585 IFLLSTR-----AGG-LGINLTAADTCIL 607 (759)
Q Consensus 585 v~LlsT~-----agg-~GINL~~a~~VI~ 607 (759)
| +++|. ... ..+++...+.||+
T Consensus 152 I-lv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 152 I-VVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp E-EEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred E-EEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 4 55552 222 2356667777666
No 352
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=24.98 E-value=92 Score=34.33 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=29.1
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCC--CeEEEECCc
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKGNGLHG--PYLVIAPLS 248 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~~~~~~--~~LIV~P~s 248 (759)
.+.+.+++-.+|+|||...-+++..+......+ .++++=|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 367889999999999998888877766543333 234444543
No 353
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=24.97 E-value=3.2e+02 Score=24.76 Aligned_cols=66 Identities=9% Similarity=0.182 Sum_probs=48.8
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCCCCCCCCCEEEEe
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILY 608 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~GINL~~a~~VI~~ 608 (759)
....+.|.+........+...|...|+++..+++... .| .+. +.++|--..-|+- .+.||++
T Consensus 60 g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~---v~v~t~~~~KGlE---f~~V~~~ 121 (174)
T 3dmn_A 60 ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APG---VIVVPSFLAKGLE---FDAVIVW 121 (174)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSS---EEEEEGGGCTTCC---EEEEEEE
T ss_pred CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCC---eEEEEccccCCcC---CCEEEEe
Confidence 3567888888888899999999999999888876542 12 123 4666777777865 7899999
Q ss_pred CCCC
Q 004347 609 DSDW 612 (759)
Q Consensus 609 D~~w 612 (759)
++..
T Consensus 122 ~~~~ 125 (174)
T 3dmn_A 122 NANQ 125 (174)
T ss_dssp TCBT
T ss_pred cCCc
Confidence 8754
No 354
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=24.91 E-value=1.4e+02 Score=28.69 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=40.7
Q ss_pred CCCeEEEcC-CCCcHHHHHHHHHHHHHhCCCC-CCeEEEECCccHHHHHHHHHHhCCCceEEE
Q 004347 208 GLNGILADQ-MGLGKTIQTIAFLAHLKGNGLH-GPYLVIAPLSTLSNWVNEISRFVPSVSAII 268 (759)
Q Consensus 208 ~~~~ILade-mGlGKTl~ai~li~~l~~~~~~-~~~LIV~P~sll~~W~~E~~~~~p~~~~~~ 268 (759)
++.+||.|+ ..+|.|+. +.+..|+.+|.. ..+.++|+... ..=.+.+.+.+|.+.+++
T Consensus 129 ~~~VilvD~~laTG~T~~--~ai~~L~~~G~pe~~I~~~~~vaa-~egl~~l~~~~P~v~i~t 188 (217)
T 3dmp_A 129 DRIFILCDPMVATGYSAA--HAIDVLKRRGVPGERLMFLALVAA-PEGVQVFQDAHPDVKLYV 188 (217)
T ss_dssp TCEEEEECSEESSSHHHH--HHHHHHHTTTCCGGGEEEECSEEC-HHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCcccccHHHH--HHHHHHHHcCCCcCeEEEEEEEeC-HHHHHHHHHHCCCCEEEE
Confidence 567899999 57999954 467778888764 56777777443 344567777788876543
No 355
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=24.84 E-value=2.4e+02 Score=26.38 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=52.3
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeccccc----CCCCCCCCCE
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGG----LGINLTAADT 604 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg----~GINL~~a~~ 604 (759)
.|..|..++.....+..+ ....+.++.+|-.++...-.+.+...+...+.+.|+++|..... .++. .+|+.
T Consensus 30 ~g~~v~~~~~~~~a~~~~----~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~-~ga~~ 104 (233)
T 1ys7_A 30 SGFEVATAVDGAEALRSA----TENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLE-AGADD 104 (233)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTT-TTCSE
T ss_pred CCCEEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHH-cCCCE
Confidence 466666555444444333 34457788888776644445556666543456667777654321 1222 13343
Q ss_pred EEEeCCCCCcchhhHHhhhhhhc
Q 004347 605 CILYDSDWNPQMDLQAMDRCHRI 627 (759)
Q Consensus 605 VI~~D~~wnp~~~~Qa~gR~~Ri 627 (759)
++ .-|.++....+++.++.|-
T Consensus 105 ~l--~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 105 YL--VKPFVLAELVARVKALLRR 125 (233)
T ss_dssp EE--ESSCCHHHHHHHHHHHHHH
T ss_pred EE--eCCCCHHHHHHHHHHHHhh
Confidence 33 3577888888888877654
No 356
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=24.77 E-value=45 Score=32.75 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=23.8
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEE
Q 004347 214 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIA 245 (759)
Q Consensus 214 ademGlGKTl~ai~li~~l~~~~~~~~~LIV~ 245 (759)
.---|.|||..++.++..+...| .++|+|=
T Consensus 13 s~kGGvGKTt~a~~LA~~la~~g--~~VlliD 42 (257)
T 1wcv_1 13 NQKGGVGKTTTAINLAAYLARLG--KRVLLVD 42 (257)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred eCCCCchHHHHHHHHHHHHHHCC--CCEEEEE
Confidence 34579999999999998888764 5788774
No 357
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=24.60 E-value=75 Score=27.28 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=13.7
Q ss_pred CcEEEEccchhHHHHHHHHHHhcCce
Q 004347 531 HKVLVFSQWTKILDIMEYYFNEKGYE 556 (759)
Q Consensus 531 ~kvLIFsq~~~~ld~L~~~L~~~g~~ 556 (759)
.+|||..........+...|...|+.
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~~~~ 31 (144)
T 3kht_A 6 KRVLVVEDNPDDIALIRRVLDRKDIH 31 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 34555555555555555555555544
No 358
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=24.43 E-value=3.5e+02 Score=27.13 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=53.4
Q ss_pred hccHHHHHHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHHh----cCceEEEEeCCCCHHHHHHHHHHhhccCCCceE
Q 004347 512 QCGKFRLLDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNE----KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRI 585 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~--~~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v 585 (759)
.+||-....-.+..+.. .+.++||.+.....+..+...+.. .++.+..++|+.........+ .. .+ |
T Consensus 54 GsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~--~~--i 126 (367)
T 1hv8_A 54 GSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---KN--AN--I 126 (367)
T ss_dssp SSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---HT--CS--E
T ss_pred CChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc---CC--CC--E
Confidence 47887654444433332 467899999988776666655544 478899999998865544333 22 23 3
Q ss_pred EEEecc-cc-----cCCCCCCCCCEEEE
Q 004347 586 FLLSTR-AG-----GLGINLTAADTCIL 607 (759)
Q Consensus 586 ~LlsT~-ag-----g~GINL~~a~~VI~ 607 (759)
+++|. .. ...+++...+.||+
T Consensus 127 -iv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 127 -VVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp -EEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred -EEecHHHHHHHHHcCCcccccCCEEEE
Confidence 55553 21 12355667777666
No 359
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=24.39 E-value=39 Score=33.87 Aligned_cols=22 Identities=23% Similarity=0.012 Sum_probs=18.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHH
Q 004347 211 GILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l 232 (759)
.+|.-+.|+|||+.+.+++..+
T Consensus 107 ~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 107 IWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhh
Confidence 5788899999999999887753
No 360
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=24.38 E-value=72 Score=32.81 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=26.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
.+..---|.|||..+..++..+...| .++|+|--
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~G--~rVllvD~ 55 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKVR--SSVLLIST 55 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTSS--SCEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC--CeEEEEEC
Confidence 35666789999999999998888764 57777743
No 361
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=24.36 E-value=1.6e+02 Score=24.80 Aligned_cols=95 Identities=7% Similarity=0.005 Sum_probs=46.9
Q ss_pred CCCc-EEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhc--cCCCceEEEEecccccCC-CCC--CCC
Q 004347 529 RNHK-VLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFND--VNSSYRIFLLSTRAGGLG-INL--TAA 602 (759)
Q Consensus 529 ~~~k-vLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~--~~~~~~v~LlsT~agg~G-INL--~~a 602 (759)
.|.. +..++.....+..+ ....+.++.++-.++...-.+.+...+. ....+.|++++......- ... .+|
T Consensus 32 ~~~~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~ 107 (143)
T 3cnb_A 32 FPYAKIKIAYNPFDAGDLL----HTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGA 107 (143)
T ss_dssp CTTCEEEEECSHHHHHHHH----HHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTC
T ss_pred cCccEEEEECCHHHHHHHH----HhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCC
Confidence 4556 44444444333333 3345677777766554334455555554 234566666654322110 000 123
Q ss_pred CEEEEeCCCCCcchhhHHhhhhhhcCC
Q 004347 603 DTCILYDSDWNPQMDLQAMDRCHRIGQ 629 (759)
Q Consensus 603 ~~VI~~D~~wnp~~~~Qa~gR~~RiGQ 629 (759)
+.++ .-|.++....+++.++.+.++
T Consensus 108 ~~~l--~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 108 ETCF--GKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp SEEE--ESSCCHHHHHHHHHHHHHTTC
T ss_pred cEEE--eCCCCHHHHHHHHHHHHHhhc
Confidence 3332 346677777777777765443
No 362
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=24.34 E-value=45 Score=35.30 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=23.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCC----CCCCeEEE
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNG----LHGPYLVI 244 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~----~~~~~LIV 244 (759)
+..---|.|||.+++.++..+...+ ...++|+|
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 3335578999999999988887431 23566665
No 363
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=24.12 E-value=70 Score=28.81 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=33.3
Q ss_pred CCCCeEEEECCccHHH-HHHHHHHhCCCceEEEEeCCh--hHHHHHHHhcCCCCCCCCCCEEEec
Q 004347 237 LHGPYLVIAPLSTLSN-WVNEISRFVPSVSAIIYHGSK--KERDEIRRKHMPRAIGPKFPIVVTS 298 (759)
Q Consensus 237 ~~~~~LIV~P~sll~~-W~~E~~~~~p~~~~~~~~g~~--~~r~~~~~~~~~~~~~~~~~vvItt 298 (759)
..+++||.|+..-... ....+... +..+..+||.. ..|......+ ..+...|+|+|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f----~~g~~~vlv~T 92 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEF----KRGEYRYLVAT 92 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHH----HTTSCSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHH----HcCCCeEEEEC
Confidence 3468999999764443 33444443 56788888864 3333332222 12466788888
No 364
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=24.10 E-value=65 Score=29.68 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=20.0
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l 232 (759)
++...+|.-.+|+|||.++-.+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45567788889999998877766554
No 365
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=23.56 E-value=60 Score=28.36 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=31.2
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCce-EEEEeCCCC
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVR 565 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~l~G~~~ 565 (759)
..+..|+|||+.-.........|...|+. +..++|++.
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 35788999999876667788888889995 889999865
No 366
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=23.42 E-value=43 Score=28.85 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=30.3
Q ss_pred CCCcEEEEccchhH--HHHHHHHHHhcCceEEEEeCCCC
Q 004347 529 RNHKVLVFSQWTKI--LDIMEYYFNEKGYEVCRIDGSVR 565 (759)
Q Consensus 529 ~~~kvLIFsq~~~~--ld~L~~~L~~~g~~~~~l~G~~~ 565 (759)
.+.+++|||..-.. .......|...|+++..++|++.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 46789999987655 67788888999999888999765
No 367
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=23.21 E-value=91 Score=28.38 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=33.2
Q ss_pred CCCCeEEEECCccHHHHH-HHHHHhCCCceEEEEeCChh--HHHHHHHhcCCCCCCCCCCEEEec
Q 004347 237 LHGPYLVIAPLSTLSNWV-NEISRFVPSVSAIIYHGSKK--ERDEIRRKHMPRAIGPKFPIVVTS 298 (759)
Q Consensus 237 ~~~~~LIV~P~sll~~W~-~E~~~~~p~~~~~~~~g~~~--~r~~~~~~~~~~~~~~~~~vvItt 298 (759)
..+++||.|+..-...+. ..+... +..+..+||... +|......+ ..+...|+|+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f----~~g~~~vLvaT 88 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQF----KDFQRRILVAT 88 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHH----HTTSCSEEEES
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHH----HCCCCcEEEEC
Confidence 456899999976544443 444443 567888888643 333322221 12466788887
No 368
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=23.20 E-value=4.2e+02 Score=24.03 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=51.9
Q ss_pred hccHHHH-HHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHHh----c-CceEEEEeCCCCHHHHHHHHHHhhccCCCc
Q 004347 512 QCGKFRL-LDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNE----K-GYEVCRIDGSVRLDERKRQIQDFNDVNSSY 583 (759)
Q Consensus 512 ~s~K~~~-L~~lL~~l~~--~~~kvLIFsq~~~~ld~L~~~L~~----~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 583 (759)
.+||-.. +.-++..+.. .+.++||.+.....+..+...+.. . ++.+..++|+.+...... .+. ..+
T Consensus 50 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~ 123 (206)
T 1vec_A 50 GTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RLD---DTV 123 (206)
T ss_dssp SSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HTT---SCC
T ss_pred CCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hcC---CCC
Confidence 4677753 3344444322 355899999988876666555543 2 678899999988654332 222 234
Q ss_pred eEEEEecc-cc-----cCCCCCCCCCEEEE
Q 004347 584 RIFLLSTR-AG-----GLGINLTAADTCIL 607 (759)
Q Consensus 584 ~v~LlsT~-ag-----g~GINL~~a~~VI~ 607 (759)
.| +++|. .. ...+++...+.||+
T Consensus 124 ~i-~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 124 HV-VIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp SE-EEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CE-EEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 45 55553 21 12345667777766
No 369
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=23.15 E-value=30 Score=29.62 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=22.9
Q ss_pred CCcEEEEccchhHHHHHHHHHHhcC-ceEEEE
Q 004347 530 NHKVLVFSQWTKILDIMEYYFNEKG-YEVCRI 560 (759)
Q Consensus 530 ~~kvLIFsq~~~~ld~L~~~L~~~g-~~~~~l 560 (759)
..++||..........+..+|...| +.+...
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~ 45 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVS 45 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEe
Confidence 3478888888888888888888777 765533
No 370
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=23.11 E-value=51 Score=29.21 Aligned_cols=38 Identities=13% Similarity=0.334 Sum_probs=30.7
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCce-EEEEeCCCC
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVR 565 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~l~G~~~ 565 (759)
..+..++|||..-.........|...|+. +..++|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 45678999999877777788888889995 788888865
No 371
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=23.07 E-value=55 Score=31.12 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=19.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
+...+|.-.+|+|||.++-.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4456788889999999887776654
No 372
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=23.01 E-value=1.2e+02 Score=30.15 Aligned_cols=43 Identities=9% Similarity=-0.078 Sum_probs=30.1
Q ss_pred hhcCCCeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEECCc
Q 004347 205 WQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLS 248 (759)
Q Consensus 205 ~~~~~~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P~s 248 (759)
+..|.-.+|+-..|+|||..+..++..+.... ..+++++....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~ 74 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE 74 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC
Confidence 45565678899999999988887777665531 23777776543
No 373
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=22.75 E-value=53 Score=28.44 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=30.7
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCce-EEEEeCCCC
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGYE-VCRIDGSVR 565 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~l~G~~~ 565 (759)
..+.+++|||..-.........|...|++ +..++|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 35788999999866677777888888985 888999975
No 374
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=22.74 E-value=2.9e+02 Score=22.51 Aligned_cols=92 Identities=13% Similarity=0.210 Sum_probs=45.6
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccC--CCceEEEEecccc----cCCCCCCCC
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVN--SSYRIFLLSTRAG----GLGINLTAA 602 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~--~~~~v~LlsT~ag----g~GINL~~a 602 (759)
.|..+..+......++ .+....+.++.++-.++...-.+.+...+... ..+.++++|.... ..++.. +|
T Consensus 25 ~g~~v~~~~~~~~a~~----~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~-ga 99 (127)
T 2jba_A 25 NGFQPVEAEDYDSAVN----QLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLET-GA 99 (127)
T ss_dssp TTCEEEEECSHHHHHT----TCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCC-SC
T ss_pred CCceEEEeCCHHHHHH----HHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhc-CC
Confidence 3555554443332222 23333456666665544333344555555422 4556666665421 223332 23
Q ss_pred CEEEEeCCCCCcchhhHHhhhhhhc
Q 004347 603 DTCILYDSDWNPQMDLQAMDRCHRI 627 (759)
Q Consensus 603 ~~VI~~D~~wnp~~~~Qa~gR~~Ri 627 (759)
+.++ .-|+++....+++.++.+.
T Consensus 100 ~~~l--~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 100 DDCI--TKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp SEEE--EESCCHHHHHHHHHHHHHC
T ss_pred CeEE--eCCCCHHHHHHHHHHHHhc
Confidence 3333 3377788888888777653
No 375
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=22.71 E-value=3.8e+02 Score=27.43 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=53.4
Q ss_pred hccHHHHH-HHHHHHHhh--CCCcEEEEccchhHHHHHHHHHHh----cCceEEEEeCCCCHHHHHHHHHHhhccCCCce
Q 004347 512 QCGKFRLL-DRLLARLFA--RNHKVLVFSQWTKILDIMEYYFNE----KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 584 (759)
Q Consensus 512 ~s~K~~~L-~~lL~~l~~--~~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 584 (759)
.+||-... .-++..+.. .+.++||.+.....+..+...+.. .|+.+..+.|+........ ..+ ....
T Consensus 68 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~~ 141 (400)
T 1s2m_A 68 GTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---RLN---ETVH 141 (400)
T ss_dssp TSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---HTT---SCCS
T ss_pred CcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---Hhc---CCCC
Confidence 47887643 333443332 456899999988776655555543 4788999999988543322 222 2344
Q ss_pred EEEEecc-c----c-cCCCCCCCCCEEEEeC
Q 004347 585 IFLLSTR-A----G-GLGINLTAADTCILYD 609 (759)
Q Consensus 585 v~LlsT~-a----g-g~GINL~~a~~VI~~D 609 (759)
| +++|. . . ....++...+.||+=+
T Consensus 142 I-vv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 142 I-LVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp E-EEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred E-EEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 5 45552 2 1 2235667777777633
No 376
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=22.60 E-value=3.6e+02 Score=27.77 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=54.0
Q ss_pred hccHHHHHH-HHHHHHh--hCCCcEEEEccchhHHHHHHHHHHh----cCceEEEEeCCCCHHHHHHHHHHhhccCCCce
Q 004347 512 QCGKFRLLD-RLLARLF--ARNHKVLVFSQWTKILDIMEYYFNE----KGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 584 (759)
Q Consensus 512 ~s~K~~~L~-~lL~~l~--~~~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 584 (759)
.+||-.... -++..+. ..+.++||.++....+..+...+.. .++.+..+.|+.........+. . .. .
T Consensus 84 GsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~--~ 157 (410)
T 2j0s_A 84 GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---Y-GQ--H 157 (410)
T ss_dssp TSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---H-CC--S
T ss_pred CCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh---c-CC--C
Confidence 478875433 3343332 2567999999998877666665543 4678889999988765544433 2 12 3
Q ss_pred EEEEecc-----ccc-CCCCCCCCCEEEE
Q 004347 585 IFLLSTR-----AGG-LGINLTAADTCIL 607 (759)
Q Consensus 585 v~LlsT~-----agg-~GINL~~a~~VI~ 607 (759)
++++|. ... ..+++...+.||+
T Consensus 158 -ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 158 -VVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp -EEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred -EEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 455553 222 2456667777766
No 377
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=22.52 E-value=2.6e+02 Score=22.66 Aligned_cols=60 Identities=10% Similarity=0.019 Sum_probs=40.2
Q ss_pred CCCcEEEEc-cchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe
Q 004347 529 RNHKVLVFS-QWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLS 589 (759)
Q Consensus 529 ~~~kvLIFs-q~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~Lls 589 (759)
...+|+||+ .+......+..+|...|++|..++=....+.+..+.+.. .+...+.++++.
T Consensus 14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~-~g~~~vP~ifi~ 74 (99)
T 3qmx_A 14 VSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARA-NGKRSLPQIFID 74 (99)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHT-TTCCCSCEEEET
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHh-CCCCCCCEEEEC
Confidence 356888886 445667888888999999999998887766655554433 123445555544
No 378
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=22.44 E-value=48 Score=35.72 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=26.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC
Q 004347 210 NGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP 246 (759)
Q Consensus 210 ~~ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P 246 (759)
..+++-..|+|||..+..++..+...| .++++|.-
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G--~kVllv~~ 135 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRG--LKPALIAA 135 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHH--CCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEec
Confidence 455677799999999999988887653 46777664
No 379
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=22.37 E-value=52 Score=28.95 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=31.1
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCc-eEEEEeCCCC
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGY-EVCRIDGSVR 565 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~-~~~~l~G~~~ 565 (759)
..+..++|||..-.........|...|+ ++..++|++.
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 3578899999887667777888888999 5889999975
No 380
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.25 E-value=2.3e+02 Score=23.43 Aligned_cols=29 Identities=10% Similarity=0.323 Sum_probs=19.6
Q ss_pred CCcEEEEccchhHHHHHHHHHHhcCceEE
Q 004347 530 NHKVLVFSQWTKILDIMEYYFNEKGYEVC 558 (759)
Q Consensus 530 ~~kvLIFsq~~~~ld~L~~~L~~~g~~~~ 558 (759)
+.++||..........+...|...|+.+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~ 35 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTV 35 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEE
Confidence 45677777776677777777777666544
No 381
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=22.17 E-value=96 Score=28.85 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=32.4
Q ss_pred hccHHHHHHHHHHHHh------hCCCcEEEEccchhHHHH-HHHHHHh---cCceEEEEeCCCCH
Q 004347 512 QCGKFRLLDRLLARLF------ARNHKVLVFSQWTKILDI-MEYYFNE---KGYEVCRIDGSVRL 566 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~------~~~~kvLIFsq~~~~ld~-L~~~L~~---~g~~~~~l~G~~~~ 566 (759)
.+||-......+..+. ..+.++||.+.....++. +...+.. .++.+..++|+...
T Consensus 58 GsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~ 122 (216)
T 3b6e_A 58 GSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQL 122 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---C
T ss_pred CCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCccc
Confidence 4667655444443322 236789999998776655 4444433 26788889887653
No 382
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=21.77 E-value=2.3e+02 Score=25.95 Aligned_cols=37 Identities=5% Similarity=0.027 Sum_probs=16.4
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEec
Q 004347 554 GYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLST 590 (759)
Q Consensus 554 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT 590 (759)
.+.++.+|-.++...-.+.+...+...+.+.|+++|.
T Consensus 48 ~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~ 84 (208)
T 1yio_A 48 QHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITA 84 (208)
T ss_dssp SCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 3455555554443233344444433233444555543
No 383
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=21.76 E-value=1.3e+02 Score=25.27 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=47.6
Q ss_pred CCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCC-----HHHHHHHHHHhhccCCCceEEEEecccccC----CCCC
Q 004347 529 RNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR-----LDERKRQIQDFNDVNSSYRIFLLSTRAGGL----GINL 599 (759)
Q Consensus 529 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~-----~~~R~~~i~~F~~~~~~~~v~LlsT~agg~----GINL 599 (759)
.|..+..++.....+..+ ....+.++.++-.++ ...-.+.+...+.....+.|++++...... .+.
T Consensus 26 ~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~- 100 (140)
T 2qr3_A 26 HFSKVITLSSPVSLSTVL----REENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIK- 100 (140)
T ss_dssp TSSEEEEECCHHHHHHHH----HHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHH-
T ss_pred CCcEEEEeCCHHHHHHHH----HcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHH-
Confidence 356666555544444433 344577777876654 333344455544433456666666442211 111
Q ss_pred CCCCEEEEeCCCCCcchhhHHhhhhhhc
Q 004347 600 TAADTCILYDSDWNPQMDLQAMDRCHRI 627 (759)
Q Consensus 600 ~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 627 (759)
.+++.++ .-|.++....+++.++.+-
T Consensus 101 ~g~~~~l--~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 101 EGASDFV--VKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp TTCCEEE--EESCCHHHHHHHHHHHHTC
T ss_pred cCchhee--eCCCCHHHHHHHHHHHHHh
Confidence 1233333 2367777777777777654
No 384
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=21.71 E-value=1.2e+02 Score=34.02 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=30.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHhCCCC--CCeEEEECCc
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHLKGNGLH--GPYLVIAPLS 248 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l~~~~~~--~~~LIV~P~s 248 (759)
..++++|-.+|+|||...-+++..+...... -.+++|=|+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 5788999999999999988888888764322 2355666664
No 385
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=21.71 E-value=61 Score=31.25 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
+...+|.-.+|+|||.++-.+...+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4456888889999999988777665
No 386
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=21.45 E-value=3.6e+02 Score=22.70 Aligned_cols=93 Identities=6% Similarity=0.005 Sum_probs=46.3
Q ss_pred CCcEE-EEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccCC-CCCCCCCEEEE
Q 004347 530 NHKVL-VFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLG-INLTAADTCIL 607 (759)
Q Consensus 530 ~~kvL-IFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~G-INL~~a~~VI~ 607 (759)
+..++ .+......+.. +....+.++.+|-.++...-.+.+...+...+.+.|+++|......- .....+...-+
T Consensus 28 ~~~~~~~~~~~~~al~~----~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~ 103 (141)
T 3cu5_A 28 SFDQIDQADDGINAIQI----ALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRY 103 (141)
T ss_dssp CCSEEEEESSHHHHHHH----HTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEE
T ss_pred CcEEeeecccHHHHHHH----HhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEE
Confidence 44555 44443333333 33445777888766654333445555543334566767765432211 11111122233
Q ss_pred eCCCCCcchhhHHhhhhhh
Q 004347 608 YDSDWNPQMDLQAMDRCHR 626 (759)
Q Consensus 608 ~D~~wnp~~~~Qa~gR~~R 626 (759)
+.-|+++....+++.++.+
T Consensus 104 l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 104 VEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp ECSSCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 4567788877777777654
No 387
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=21.44 E-value=76 Score=26.51 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=30.8
Q ss_pred hCCCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCC
Q 004347 528 ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR 565 (759)
Q Consensus 528 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~ 565 (759)
..+..++|||..-.........|...|+.-..++|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45788999998877777788888888985578899875
No 388
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=21.36 E-value=68 Score=29.33 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=19.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHhC
Q 004347 211 GILADQMGLGKTIQTIAFLAHLKGN 235 (759)
Q Consensus 211 ~ILademGlGKTl~ai~li~~l~~~ 235 (759)
.+|.-.+|+|||.++-.+...+...
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4667779999999988887777654
No 389
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=21.36 E-value=85 Score=27.24 Aligned_cols=73 Identities=5% Similarity=0.070 Sum_probs=32.6
Q ss_pred hcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEecccccC----CCCCCCCCEEEEeCCCCCcchhhHHhhhhhhc
Q 004347 552 EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGL----GINLTAADTCILYDSDWNPQMDLQAMDRCHRI 627 (759)
Q Consensus 552 ~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT~agg~----GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 627 (759)
...+.++.+|-.++...-.+.+...+.....+.|++++...-.. .+. .+|+.+| .-|+++....+++.++.+-
T Consensus 64 ~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l--~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 64 KESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVK-AGVDAYV--LKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp TSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHH-TTCSEEE--ETTSCHHHHHHHHHHHHTT
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHH-CCCcEEE--ecCCCHHHHHHHHHHHHcC
Confidence 34455666665544333344444444433445555555432110 011 1122222 2355666666666655543
No 390
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=21.29 E-value=54 Score=30.93 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHHHHHHhCC
Q 004347 217 MGLGKTIQTIAFLAHLKGNG 236 (759)
Q Consensus 217 mGlGKTl~ai~li~~l~~~~ 236 (759)
-|+|||.|+=.+..+|...|
T Consensus 9 DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp TTSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCC
Confidence 69999999998888888875
No 391
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=21.28 E-value=1.3e+02 Score=25.58 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=12.0
Q ss_pred cEEEEccchhHHHHHHHHHHhcCce
Q 004347 532 KVLVFSQWTKILDIMEYYFNEKGYE 556 (759)
Q Consensus 532 kvLIFsq~~~~ld~L~~~L~~~g~~ 556 (759)
++||..........+..+|...|+.
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~g~~ 29 (143)
T 3jte_A 5 KILVIDDESTILQNIKFLLEIDGNE 29 (143)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCce
Confidence 4444444444445555555444443
No 392
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=21.27 E-value=1.2e+02 Score=34.49 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=45.6
Q ss_pred hccHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHHhcCceEEEEe
Q 004347 512 QCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRID 561 (759)
Q Consensus 512 ~s~K~~~L~~lL~~l~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~ 561 (759)
.+||-..+..++..+...+.+|||-++....+|.|...|...+.++.|+.
T Consensus 215 GTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 215 GTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 47899999999999999999999999999999999999988889988874
No 393
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=21.21 E-value=2.9e+02 Score=28.19 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=53.5
Q ss_pred hccHHHH-HHHHHHHHhh--CCCcEEEEccchhHHHHHHHHHH----hcCceEEEEeCCCCHHHHHHHHHHhhccCCCce
Q 004347 512 QCGKFRL-LDRLLARLFA--RNHKVLVFSQWTKILDIMEYYFN----EKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYR 584 (759)
Q Consensus 512 ~s~K~~~-L~~lL~~l~~--~~~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 584 (759)
.+||-.. +.-++..+.. .+.++||.+.....+..+...+. ..++.+..++|+.+..+....+. . .+
T Consensus 68 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~--~~-- 140 (394)
T 1fuu_A 68 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR---D--AQ-- 140 (394)
T ss_dssp SHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH---H--CS--
T ss_pred CChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC---C--CC--
Confidence 4677754 4444444332 46699999999887666555544 34788999999998766554443 1 22
Q ss_pred EEEEecc-cc-----cCCCCCCCCCEEEE
Q 004347 585 IFLLSTR-AG-----GLGINLTAADTCIL 607 (759)
Q Consensus 585 v~LlsT~-ag-----g~GINL~~a~~VI~ 607 (759)
| +++|. .. ...+++...+.||+
T Consensus 141 i-~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 141 I-VVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp E-EEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred E-EEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 3 55542 21 22345566677666
No 394
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=21.19 E-value=1.1e+02 Score=29.79 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=18.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 209 LNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 209 ~~~ILademGlGKTl~ai~li~~l 232 (759)
.+.+|.-+.|+|||..+-+++..+
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999998776665543
No 395
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=20.95 E-value=46 Score=31.86 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=19.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAH 231 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~ 231 (759)
+...+|.-.+|+|||-.++.++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 455689999999999888777643
No 396
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=20.78 E-value=1.1e+02 Score=25.94 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=16.4
Q ss_pred CcEEEEccchhHHHHHHHHHHhc-Cce
Q 004347 531 HKVLVFSQWTKILDIMEYYFNEK-GYE 556 (759)
Q Consensus 531 ~kvLIFsq~~~~ld~L~~~L~~~-g~~ 556 (759)
-+|||..........+...|... |+.
T Consensus 10 ~~iLivdd~~~~~~~l~~~L~~~~~~~ 36 (143)
T 2qv0_A 10 MKVIIVEDEFLAQQELSWLINTHSQME 36 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHSCCE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCce
Confidence 45667666666666666666654 444
No 397
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=20.70 E-value=94 Score=27.23 Aligned_cols=70 Identities=4% Similarity=0.056 Sum_probs=35.7
Q ss_pred cCceEEEEeCCCCHHHHHHHHHHhhcc--CCCceEEEEeccccc----CCCCCCCCCEEEEeCCCCCcchhhHHhhhhh
Q 004347 553 KGYEVCRIDGSVRLDERKRQIQDFNDV--NSSYRIFLLSTRAGG----LGINLTAADTCILYDSDWNPQMDLQAMDRCH 625 (759)
Q Consensus 553 ~g~~~~~l~G~~~~~~R~~~i~~F~~~--~~~~~v~LlsT~agg----~GINL~~a~~VI~~D~~wnp~~~~Qa~gR~~ 625 (759)
..+..+.+|-.|+.-+-.+.++..++. ...+.|+++|..... .++.. +|+.. +-=|+++....+++.|+.
T Consensus 56 ~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~-Ga~~y--l~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 56 GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQA-GVNGY--IVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHT-TCCEE--EESSCCHHHHHHHHHHHC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHC-CCCEE--EECCCCHHHHHHHHHHHH
Confidence 346666777666655555555555431 234556666654321 11111 12222 224667777776666654
No 398
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=20.66 E-value=88 Score=32.31 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=29.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCCCeEEEEC--CccHHHHH
Q 004347 212 ILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAP--LSTLSNWV 254 (759)
Q Consensus 212 ILademGlGKTl~ai~li~~l~~~~~~~~~LIV~P--~sll~~W~ 254 (759)
+..---|.|||..+++++..+...| .++|+|-- ..-+..|.
T Consensus 20 ~~sgkGGvGKTt~a~~lA~~la~~g--~~vllid~D~~~~l~~~l 62 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSLAIQLAKVR--RSVLLLSTDPAHNLSDAF 62 (334)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTTSS--SCEEEEECCSSCHHHHHH
T ss_pred EEeCCCCccHHHHHHHHHHHHHhCC--CcEEEEECCCCCChhHHh
Confidence 5556689999999999988887654 57777764 44455554
No 399
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=20.65 E-value=89 Score=33.76 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=20.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 208 GLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 208 ~~~~ILademGlGKTl~ai~li~~l 232 (759)
..+.+|.-.+|+|||..+-+++..+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4678999999999998887776654
No 400
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=20.60 E-value=1.3e+02 Score=27.04 Aligned_cols=56 Identities=9% Similarity=0.078 Sum_probs=33.2
Q ss_pred CCCCeEEEECCccH-HHHHHHHHHhCCCceEEEEeCChh--HHHHHHHhcCCCCCCCCCCEEEec
Q 004347 237 LHGPYLVIAPLSTL-SNWVNEISRFVPSVSAIIYHGSKK--ERDEIRRKHMPRAIGPKFPIVVTS 298 (759)
Q Consensus 237 ~~~~~LIV~P~sll-~~W~~E~~~~~p~~~~~~~~g~~~--~r~~~~~~~~~~~~~~~~~vvItt 298 (759)
..+++||.|+..-. ......+... +..+..+||... +|....... ..+...|+|+|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f----~~g~~~vlv~T 87 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEF----RSGSSRILIST 87 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHH----HTTSCSEEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHH----HcCCCEEEEEc
Confidence 45789999997543 3344444443 467888888743 333332221 12466788888
No 401
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=20.28 E-value=76 Score=36.87 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=23.1
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHh
Q 004347 207 NGLNGILADQMGLGKTIQTIAFLAHLKG 234 (759)
Q Consensus 207 ~~~~~ILademGlGKTl~ai~li~~l~~ 234 (759)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 3456899999999999998888877754
No 402
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=20.18 E-value=1.6e+02 Score=24.67 Aligned_cols=93 Identities=10% Similarity=0.031 Sum_probs=45.2
Q ss_pred CCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhcc-CCCceEEEEecccccC----CCCCCCCCE
Q 004347 530 NHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDV-NSSYRIFLLSTRAGGL----GINLTAADT 604 (759)
Q Consensus 530 ~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~-~~~~~v~LlsT~agg~----GINL~~a~~ 604 (759)
|..+..++.....+..+.. ...+.++.++-.++...-.+.+...+.. ...+.|++++...... .+. .+++.
T Consensus 31 g~~v~~~~~~~~a~~~~~~---~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~ 106 (136)
T 3hdv_A 31 GIDAVGADGAEEARLYLHY---QKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMH-LGVVD 106 (136)
T ss_dssp TCCEEEESSHHHHHHHHHH---CTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHH-TTCSE
T ss_pred CceEEEeCCHHHHHHHHHh---CCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHh-CCcce
Confidence 5666665544443333322 1225666676665544455556655543 2455566665432210 111 12232
Q ss_pred EEEeCCCCCcchhhHHhhhhhhcC
Q 004347 605 CILYDSDWNPQMDLQAMDRCHRIG 628 (759)
Q Consensus 605 VI~~D~~wnp~~~~Qa~gR~~RiG 628 (759)
+ +.-|+++....+++.|+.+-+
T Consensus 107 ~--l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 107 F--LLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp E--EESSCCHHHHHHHHHHHHC--
T ss_pred E--EeCCCCHHHHHHHHHHHhcCc
Confidence 2 234667777777777666544
No 403
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=20.14 E-value=1e+02 Score=26.65 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=12.5
Q ss_pred CCcEEEEccchhHHHHHHHHHHhcC
Q 004347 530 NHKVLVFSQWTKILDIMEYYFNEKG 554 (759)
Q Consensus 530 ~~kvLIFsq~~~~ld~L~~~L~~~g 554 (759)
+.+|||..........+..+|...|
T Consensus 15 ~~~iLivdd~~~~~~~l~~~L~~~~ 39 (152)
T 3eul_A 15 KVRVVVGDDHPLFREGVVRALSLSG 39 (152)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred eEEEEEEcCCHHHHHHHHHHHhhCC
Confidence 3445555555555555555554444
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=20.07 E-value=99 Score=30.41 Aligned_cols=38 Identities=29% Similarity=0.239 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHHHHH
Q 004347 195 LKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL 232 (759)
Q Consensus 195 ~~gv~~l~~~~~~~~~~ILademGlGKTl~ai~li~~l 232 (759)
+..+.+-+.....+...+|.-.||+|||..+-.+...+
T Consensus 35 l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 35 LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 34444443322237788899999999998776665544
No 405
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=20.06 E-value=1.2e+02 Score=25.45 Aligned_cols=57 Identities=7% Similarity=-0.068 Sum_probs=25.1
Q ss_pred CCcEEEEccchhHHHHHHHHHHhcCceEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEec
Q 004347 530 NHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLST 590 (759)
Q Consensus 530 ~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~LlsT 590 (759)
+..+..++.....+..+. ...+.++.++-.++...-.+.+...+.....+.|++++.
T Consensus 31 ~~~v~~~~~~~~a~~~l~----~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 87 (137)
T 3hdg_A 31 FPEVWSAGDGEEGERLFG----LHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISA 87 (137)
T ss_dssp CSCEEEESSHHHHHHHHH----HHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCC
T ss_pred CcEEEEECCHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEec
Confidence 344444444433333332 234555666655443333444444443333444544443
Done!