BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004348
(759 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/633 (51%), Positives = 418/633 (66%), Gaps = 29/633 (4%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200
+P++Y YK+S+ DP FW + W + Q+V +N GNV I+W++ G N
Sbjct: 20 NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLN 76
Query: 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260
+ NCLDR+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V
Sbjct: 77 LAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVV 135
Query: 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKA 320
IY+PM+ E +AMLACARIGAVHSV+F GFS +++A RI+D ++VIT++ R ++
Sbjct: 136 AIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRS 195
Query: 321 IHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
I LK VD AL + + + L T + WQ+GRD+WW+D++ K + +
Sbjct: 196 IPLKKNVDDALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G+
Sbjct: 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD 369
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
+ + R SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA
Sbjct: 370 KAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA 429
Query: 561 WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
K GSAT PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYF 489
Query: 621 KPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCXXXXXXX 661
F YF+GDG SGHR+GTAE+ESALV+HP+
Sbjct: 490 STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVG 549
Query: 662 XXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721
KGQ IYA+VTL G S EL + VRK+IG A PD +HW LPKTRSGK
Sbjct: 550 IPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGK 609
Query: 722 IMRRILRKIASRQLDELGDTSTLADPGVVDQLI 754
IMRRILRKIA+ LGDTSTLADPGVV++L+
Sbjct: 610 IMRRILRKIAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/633 (51%), Positives = 417/633 (65%), Gaps = 29/633 (4%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200
+P++Y YK+S+ DP FW + W + Q+V +N GNV I+W++ G N
Sbjct: 20 NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLN 76
Query: 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260
+ NCLDR+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V
Sbjct: 77 LAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVV 135
Query: 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKA 320
IY+PM+ E +AMLACARIGAVHSV+F GFS +++A RI+D ++VIT++ R +
Sbjct: 136 AIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGAS 195
Query: 321 IHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
I LK VD AL + + + L T + WQ+GRD+WW+D++ K + +
Sbjct: 196 IPLKKNVDDALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G+
Sbjct: 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD 369
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
+ + R SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA
Sbjct: 370 KAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA 429
Query: 561 WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
K GSAT PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYF 489
Query: 621 KPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCXXXXXXX 661
F YF+GDG SGHR+GTAE+ESALV+HP+
Sbjct: 490 STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVG 549
Query: 662 XXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721
KGQ IYA+VTL G S EL + VRK+IG A PD +HW LPKTRSGK
Sbjct: 550 IPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGK 609
Query: 722 IMRRILRKIASRQLDELGDTSTLADPGVVDQLI 754
IMRRILRKIA+ LGDTSTLADPGVV++L+
Sbjct: 610 IMRRILRKIAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/633 (50%), Positives = 417/633 (65%), Gaps = 29/633 (4%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200
+P++Y YK+S+ DP FW + W + Q+V +N GNV I+W++ G N
Sbjct: 20 NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLN 76
Query: 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260
+ NCLDR+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V
Sbjct: 77 LAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVV 135
Query: 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKA 320
IY+PM+ E +AMLACARIGAVHSV+F GFS +++A RI+D ++VIT++ R ++
Sbjct: 136 AIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRS 195
Query: 321 IHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
I LK VD AL + + + L T + WQ+GRD+WW+D++ K + +
Sbjct: 196 IPLKKNVDDALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G+
Sbjct: 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD 369
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
+ + R SLR+LGS GEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA
Sbjct: 370 KAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA 429
Query: 561 WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
K GSAT PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYF 489
Query: 621 KPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCXXXXXXX 661
F YF+GDG SGHR+GTAE+ESALV+HP+
Sbjct: 490 STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVG 549
Query: 662 XXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721
KGQ IYA+VTL G S EL + VRK+IG A PD +HW LPKTRSGK
Sbjct: 550 IPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGK 609
Query: 722 IMRRILRKIASRQLDELGDTSTLADPGVVDQLI 754
IMRRILRKIA+ LGDTSTLADPGVV++L+
Sbjct: 610 IMRRILRKIAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/633 (50%), Positives = 417/633 (65%), Gaps = 29/633 (4%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200
+P++Y YK+S+ DP FW + W + Q+V +N GNV I+W++ G N
Sbjct: 20 NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLN 76
Query: 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260
+ NCLDR+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V
Sbjct: 77 LAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVV 135
Query: 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKA 320
IY+PM+ E +AMLACARIGAVHSV+F GFS +++A RI+D ++VIT++ R ++
Sbjct: 136 AIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRS 195
Query: 321 IHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
I LK VD AL + + + L T + WQ+GRD+WW+D++ K + +
Sbjct: 196 IPLKKNVDDALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G+
Sbjct: 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD 369
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
+ + R SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA
Sbjct: 370 KAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA 429
Query: 561 WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
K GSAT PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYF 489
Query: 621 KPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCXXXXXXX 661
F YF+GDG SGHR+GTAE+ESALV+HP+
Sbjct: 490 STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVG 549
Query: 662 XXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721
KGQ IYA+VTL G S EL + VRK+IG A PD +HW LPKTRSG
Sbjct: 550 IPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGA 609
Query: 722 IMRRILRKIASRQLDELGDTSTLADPGVVDQLI 754
IMRRILRKIA+ LGDTSTLADPGVV++L+
Sbjct: 610 IMRRILRKIAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/633 (50%), Positives = 417/633 (65%), Gaps = 29/633 (4%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200
+P++Y YK+S+ DP FW + W + Q+V +N GNV I+W++ G N
Sbjct: 20 NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLN 76
Query: 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260
+ NCLDR+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V
Sbjct: 77 LAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVV 135
Query: 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKA 320
IY+PM+ E +AMLACARIGAVHSV+F GFS +++A RI+D ++VIT++ R ++
Sbjct: 136 AIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRS 195
Query: 321 IHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
I LK VD AL + + + L T + WQ+GRD+WW+D++ K + +
Sbjct: 196 IPLKKNVDDALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G+
Sbjct: 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD 369
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
+ + R SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA
Sbjct: 370 KAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA 429
Query: 561 WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
K GSAT PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYF 489
Query: 621 KPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCXXXXXXX 661
F YF+GDG SGHR+GTAE+ESALV+HP+
Sbjct: 490 STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVG 549
Query: 662 XXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721
KGQ IYA+VTL G S EL + V K+IG A PD +HW LPKTRSGK
Sbjct: 550 IPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGK 609
Query: 722 IMRRILRKIASRQLDELGDTSTLADPGVVDQLI 754
IMRRILRKIA+ LGDTSTLADPGVV++L+
Sbjct: 610 IMRRILRKIAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/633 (50%), Positives = 417/633 (65%), Gaps = 29/633 (4%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200
+P++Y YK+S+ DP FW + W + Q+V +N GNV I+W++ G N
Sbjct: 20 NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLN 76
Query: 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260
+ NCLDR+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V
Sbjct: 77 LAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVV 135
Query: 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKA 320
IY+PM+ E +AMLACARIGAVHSV+F GFS +++A RI+D ++VIT++ R ++
Sbjct: 136 AIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRS 195
Query: 321 IHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
I LK VD AL + + + L T + WQ+GRD+WW+D++ K + +
Sbjct: 196 IPLKKNVDDALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G+
Sbjct: 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD 369
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
+ + R SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA
Sbjct: 370 KAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA 429
Query: 561 WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
K GSAT PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYF 489
Query: 621 KPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCXXXXXXX 661
F YF+GDG SGHR+GTAE+ESALV+HP+
Sbjct: 490 STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVG 549
Query: 662 XXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721
KGQ IYA+VTL G S EL + V K+IG A PD +HW LPKTRSGK
Sbjct: 550 IPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGK 609
Query: 722 IMRRILRKIASRQLDELGDTSTLADPGVVDQLI 754
IMRRILRKIA+ LGDTSTLADPGVV++L+
Sbjct: 610 IMRRILRKIAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/633 (50%), Positives = 417/633 (65%), Gaps = 29/633 (4%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200
+P++Y YK+S+ DP FW + W + Q+V +N GNV I+W++ G N
Sbjct: 20 NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLN 76
Query: 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260
+ NCLDR+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V
Sbjct: 77 LAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVV 135
Query: 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKA 320
IY+PM+ E +AMLACARIGAVHSV+F GFS +++A I+D ++VIT++ R ++
Sbjct: 136 AIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRS 195
Query: 321 IHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
I LK VD AL + + + L T + WQ+GRD+WW+D++ K + +
Sbjct: 196 IPLKKNVDDALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQ 249
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G+
Sbjct: 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD 369
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
+ + R SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA
Sbjct: 370 KAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA 429
Query: 561 WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
K GSAT PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF
Sbjct: 430 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYF 489
Query: 621 KPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCXXXXXXX 661
F YF+GDG SGHR+GTAE+ESALV+HP+
Sbjct: 490 STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVG 549
Query: 662 XXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721
KGQ IYA+VTL G S EL + VRK+IG A PD +HW LPKTRSGK
Sbjct: 550 IPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGK 609
Query: 722 IMRRILRKIASRQLDELGDTSTLADPGVVDQLI 754
IMRRILRKIA+ LGDTSTLADPGVV++L+
Sbjct: 610 IMRRILRKIAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 536 bits (1381), Expect = e-152, Method: Compositional matrix adjust.
Identities = 289/643 (44%), Positives = 383/643 (59%), Gaps = 39/643 (6%)
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFY-WKEKWGQRVCSENLDVRKGNVKIEWFKGGITNI 201
Q Y ++K S+EDPA F+ A++F W + + + + R WF G N
Sbjct: 24 QDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNA 83
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAV 260
CYNC+DR+ +K AI +E ++PG ++TY +LL++VCQ+A L +GV+KGD V
Sbjct: 84 CYNCVDRH-ALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTV 142
Query: 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKA 320
+Y+PM+ E I +LA +RIGA+HSVVFAGFSS+SL RI D KVVIT++ RG K
Sbjct: 143 AVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKV 202
Query: 321 IHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
I K IVD AL E V L Y + + + RD+ W KY T
Sbjct: 203 IETKRIVDDALRETP----GVRHVLVYRKTN---NPSVAFHAPRDLDWATEKKKYKTYYP 255
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
VD+EDPLFLLYTSGSTG PKGV H+T GY++ T +Y FD DV++ D GW
Sbjct: 256 CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGW 315
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
ITGH+YV YGP+L G + +VFEG P YP+ R WDI+D++KVT FY APT +R L R G+
Sbjct: 316 ITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD 375
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
Y+ +S KSLR LGSVGEPI W W+ +G + PI DT+WQTE+G ++TPL G
Sbjct: 376 SYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG 435
Query: 561 -WPQKPGSATFPFFGVQPVIVD-EKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYET 617
P KPGSA+FPFFG+ V++D G E+ G L +K++WP RT++ +H+RY
Sbjct: 436 VTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLD 495
Query: 618 TYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCXXXX 658
TY P+PGYYFTGDG + SGHR+ TAE+E+A++ P
Sbjct: 496 TYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECA 555
Query: 659 XXXXXXXXKGQGIYAFVTLVEGVPYS-------EELRKSLVLAVRKQIGAFAAPDKIHWA 711
GQ + AFV L +S ++++K LV VRK IG FAAP I
Sbjct: 556 VVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILV 615
Query: 712 PGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLI 754
LPKTRSGKIMRRILRKI + + D+LGD STL++PG+V LI
Sbjct: 616 DDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLI 658
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 143/541 (26%), Positives = 218/541 (40%), Gaps = 53/541 (9%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+K+A+ W +D G + T+ L + AN+ G+ KGD V++ L + ML
Sbjct: 71 EKLAMIW-CDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCML 129
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
++GA+ + + RI K+++ A P+ VD A EC
Sbjct: 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCI-AEDDVPEQ------VDEAHAECG 182
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
D+ L E W D R ++ P + ED + ++
Sbjct: 183 ------DIPLKKAKVGGDVLEG--WIDFRK-ELEESSPIFERPTGEVSTKNEDICLVYFS 233
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNG 455
SG+ G PK V H + H T KY + + +++ AD GW YG + G
Sbjct: 234 SGTAGFPKMVEHDNTYPLGHILTA-KYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAG 292
Query: 456 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
+V V++ ++ + KY VT F PT+ R L++ E ++ Y+ +L+
Sbjct: 293 CAVFVYDYDRF--EAKNMLEKASKYGVTTFCAPPTIYRFLIK---EDLSHYNFSTLKYAV 347
Query: 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV 575
GEP+NP + F G + + + QTET I P P KPGS P G
Sbjct: 348 VAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETV-VTIATFPWMEP-KPGSIGKPTPGY 402
Query: 576 QPVIVDEKGVEIEGECSGYLCIKS--SWPGAFRTLYG-DHERYETTYFKPFPGYYFTGDG 632
+ ++D G E G + I + P YG D ER E T+ GYY TGD
Sbjct: 403 KIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHD---GYYHTGDM 459
Query: 633 C-------------------SSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYA 673
+SG+++G EVESAL+ HP +GQ I A
Sbjct: 460 AWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKA 519
Query: 674 FVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733
+ L + S+ L+ L V+ + P I + P LPKT SGKI R +R
Sbjct: 520 TIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579
Query: 734 Q 734
Q
Sbjct: 580 Q 580
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 132/538 (24%), Positives = 211/538 (39%), Gaps = 74/538 (13%)
Query: 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARI 280
W N G + + +L + Q AN L G+++GD V + LP + E + +L C R
Sbjct: 63 WWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRA 122
Query: 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGIS 340
G + S + R+ K K ++ + V + VD EC S
Sbjct: 123 GLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQE---------VDTVASECP----S 169
Query: 341 VDVCLTYENQSAMTRENTKWQDGRDIW--WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGS 398
+ + L +S D W ++ ++ + T +++ + +TSG+
Sbjct: 170 LRIKLLVSEKSC------------DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGT 217
Query: 399 TGKPKGVLHTTGGYMVHTATTFKYAFD-----YKPSDVYWCTADCGWITGHSYVTYGPML 453
+G PK H+ +++ K D + SD+ W +D GWI P
Sbjct: 218 SGLPKMAEHS------YSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWA 271
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
GA V P + D + Y + AP + R L++ + ++ Y L+
Sbjct: 272 LGACTFVHL-LPKF-DPLVILKTLSSYPIKSMMGAPIVYRMLLQ---QDLSSYKFPHLQN 326
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG-GFMITPLPGAWPQKPGSATFPF 572
+VGE + P N + I +++ QTETG M++ P G+A
Sbjct: 327 CVTVGESLLPET---LENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAA-SC 382
Query: 573 FGVQPVIVDEKGVEIEGECSGYLCIKSSWP----GAFR-----------TLYGDHERYET 617
+ VQ I+D+KG + G + I+ P G F + GD
Sbjct: 383 YDVQ--IIDDKGNVLPPGTEGDIGIRVK-PIRPIGIFSGYVDNPDKTAANIRGDFWLLGD 439
Query: 618 TYFKPFPGYY-FTGDG----CSSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIY 672
K GY+ F G SSG+RIG +EVE+AL+ HP +G+ +
Sbjct: 440 RGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVK 499
Query: 673 AFVTLVEGVPYS--EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
AFV L E+L K L V+ + P KI + LPKT +GKI R LR
Sbjct: 500 AFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLR 557
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 132/538 (24%), Positives = 211/538 (39%), Gaps = 74/538 (13%)
Query: 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARI 280
W N G + + +L + Q AN L G+++GD V + LP + E + +L C R
Sbjct: 63 WWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRA 122
Query: 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGIS 340
G + S + R+ K K ++ + V + VD EC S
Sbjct: 123 GLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQE---------VDTVASECP----S 169
Query: 341 VDVCLTYENQSAMTRENTKWQDGRDIW--WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGS 398
+ + L +S D W ++ ++ + T +++ + +TSG+
Sbjct: 170 LRIKLLVSEKSC------------DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGT 217
Query: 399 TGKPKGVLHTTGGYMVHTATTFKYAFD-----YKPSDVYWCTADCGWITGHSYVTYGPML 453
+G PK H+ +++ K D + SD+ W +D GWI P
Sbjct: 218 SGLPKMAEHS------YSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWA 271
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
GA V P + D + Y + AP + R L++ + ++ Y L+
Sbjct: 272 LGACTFVHL-LPKF-DPLVILKTLSSYPIKSMMGAPIVYRMLLQ---QDLSSYKFPHLQN 326
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG-GFMITPLPGAWPQKPGSATFPF 572
+VGE + P N + I +++ QTETG M++ P G+A
Sbjct: 327 CVTVGESLLPET---LENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAA-SC 382
Query: 573 FGVQPVIVDEKGVEIEGECSGYLCIKSSWP----GAFR-----------TLYGDHERYET 617
+ VQ I+D+KG + G + I+ P G F + GD
Sbjct: 383 YDVQ--IIDDKGNVLPPGTEGDIGIRVK-PIRPIGIFSGYVDNPDKTAANIRGDFWLLGD 439
Query: 618 TYFKPFPGYY-FTGDG----CSSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIY 672
K GY+ F G SSG+RIG +EVE+AL+ HP +G+ +
Sbjct: 440 RGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVK 499
Query: 673 AFVTLVEGVPYS--EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
AFV L E+L K L V+ + P KI + LPKT +GKI R LR
Sbjct: 500 AFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLR 557
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 122/529 (23%), Positives = 210/529 (39%), Gaps = 81/529 (15%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
TY+ + ++A+ L IG+++GD ++++LP E +A L + GA+ + +
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 294 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE-----CAKSGISVDVCLTYE 348
LA+ + K++IT +A + + + D A + C S + D CL +
Sbjct: 111 AELAKHAKASRAKLLIT--------QACYYEKVKDFARESDVKVMCVDS--APDGCLHF- 159
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 408
S +T+ + DI DVV L Y+SG+TG PKGV+ T
Sbjct: 160 --SELTQADENEAPQVDISPDDVVA------------------LPYSSGTTGLPKGVMLT 199
Query: 409 TGGYMVHTATTFKYAFDYKPSDVYWCTAD---CGWITGHSYVTYGPMLNGASVVVFEGAP 465
G + T+ D ++Y+ + D C H Y ML G V GAP
Sbjct: 200 HKGLI----TSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRV----GAP 251
Query: 466 TYP----DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521
+ G +++KYKV+I P ++ S+ + + + ++ SLR++ S G P+
Sbjct: 252 ILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--LDKHDLSSLRMIKSGGAPL 309
Query: 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPV 578
+R + + TE G + L A + KPG+ +
Sbjct: 310 GKELEDTVRAKFPQAR--LGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMK 367
Query: 579 IVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP------------FPG 625
IVD E G + G +CI+ + D E T K
Sbjct: 368 IVDPETGASLPRNQPGEICIRGDQ--IMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDD 425
Query: 626 YYFTGDGCSS-----GHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEG 680
F D G ++ AE+E+ L++HP+ G+ AFV E
Sbjct: 426 ELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK 485
Query: 681 VPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
+E+ K + KQ+ + ++ + +PK SGKI+R+ L++
Sbjct: 486 SQATEDEIKQY---ISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKE 531
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 117/532 (21%), Positives = 196/532 (36%), Gaps = 82/532 (15%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
TL+Y +L ++ ++A L+ G KG V +Y +EL I +L + GA + V
Sbjct: 489 TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKL 548
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
D ++ + D ++T +K ++ A+ L Y +
Sbjct: 549 PEDRISYMLADSAAACLLTHQEMK----------------EQAAE--------LPYTGTT 584
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGG 411
+ T++++ Q P +D DP +++YTSG+TGKPKG + T
Sbjct: 585 LFIDDQTRFEE------QASDP-------ATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631
Query: 412 YMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSG 471
AF D + ++ + ++ Y MLN A +++ + T D+
Sbjct: 632 IQGLVKHVDYMAF--SDQDTFLSVSNYAF-DAFTFDFYASMLNAARLIIAD-EHTLLDTE 687
Query: 472 RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 531
R D++ + V + + L L G +++ K LR + GE + R
Sbjct: 688 RLTDLILQENVNVMFATTALFNLLTDAGEDWM-----KGLRCILFGGERASVPHVRKALR 742
Query: 532 VVGDSRC-----PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 586
++G + P T + T ++ LP + P P I++E+
Sbjct: 743 IMGPGKLINCYGPTEGTVFAT---AHVVHDLPDSISSLPIGK--PISNASVYILNEQSQL 797
Query: 587 IEGECSGYLCIKSSWPGAFRTLYGD--HERYETTYFKPFPGYYFTGDGCS---------- 634
G LCI D E++ FKP Y TGD
Sbjct: 798 QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYA 857
Query: 635 ---------SGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSE 685
GHRI E+E L +P I A+ LV S
Sbjct: 858 GRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAY--LVNRTQLSA 915
Query: 686 ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDE 737
E K+ ++KQ+ A+ P + LP T +GK+ +R+L K QL E
Sbjct: 916 EDVKA---HLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAE 964
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 115/512 (22%), Positives = 193/512 (37%), Gaps = 49/512 (9%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
TY +L ++ + A+ L+ +GV + +++ + + LP+A L G V V +
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 294 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 353
+ + VI S A+ + V AL+ G + V E++ +
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQN---------VTQALESAEHDGCQLIVSQPRESEPRL 160
Query: 354 TRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM 413
+++++ + +D F LY+SGSTGKPKG +HT
Sbjct: 161 AP-----------LFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLY 209
Query: 414 VHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS 473
K +DV + A + G P+ GA+ ++ PT +
Sbjct: 210 WTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPT---ADAI 266
Query: 474 WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVV 533
+ + +++ T+FY PTL +++ N + + ++R+ S GE + F
Sbjct: 267 FARLVEHRPTVFYGVPTLYANMLVSPN--LPARADVAIRICTSAGEALPREIGERFTAHF 324
Query: 534 GDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSG 593
G C I D TE ++ GA + G+ P G + + DE G + G
Sbjct: 325 G---CEILDGIGSTEMLHIFLSNRAGAV--EYGTTGRPVPGYEIELRDEAGHAVPDGEVG 379
Query: 594 YLCIKSSWPGAFRTLYGDHERYETTYF----KPFPGYYFTGDGC------------SSGH 637
L IK P A + + E+ T+ + Y +GC SG
Sbjct: 380 DLYIKG--PSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQ 437
Query: 638 RIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK 697
+ EVE LV H + AFV L SE L + L V+
Sbjct: 438 YVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVK-TRAFVVLKREFAPSEILAEELKAFVKD 496
Query: 698 QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
++ P I + LPKT +GKI R LR+
Sbjct: 497 RLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 119/530 (22%), Positives = 205/530 (38%), Gaps = 77/530 (14%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
TYS + Q+A +GV + D V++ LP E ++ LA + GA + F+
Sbjct: 90 TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 294 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD-IVDAALDECAKSGISVDVCLTYENQSA 352
+A++ K++IT K + D +V +D+ I + CL + +
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIP-EGCLRFTELTQ 208
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
T E ++ D +I DVV L Y+SG+TG PKGV+ T G
Sbjct: 209 STTEASEVIDSVEISPDDVVA------------------LPYSSGTTGLPKGVMLTHKGL 250
Query: 413 MVHTATTFKYAFDYKPSDVYWCTAD---CGWITGHSYVTYGPML----NGASVVVFEGAP 465
+ T+ D + ++Y+ + D C H Y ML GA++++ P
Sbjct: 251 V----TSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM---P 303
Query: 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 525
+ + +++ + KVT+ P +V ++ + +Y S+RV+ S P+
Sbjct: 304 KF-EINLLLELIQRCKVTVAPMVPPIVLAIAKSSE--TEKYDLSSIRVVKSGAAPLGKEL 360
Query: 526 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVD- 581
+++ + + TE G + L A +P K G+ + IVD
Sbjct: 361 EDAVNAKFPNAK--LGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDP 418
Query: 582 EKGVEIEGECSGYLCIKSSW--------PGAF-RTLYGD--------------HERYETT 618
+ G + G +CI+ P A T+ D E +
Sbjct: 419 DTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVD 478
Query: 619 YFKPFPGYYFTGDGCSSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLV 678
K Y G ++ AE+E+ L+ HP G+ AFV
Sbjct: 479 RLKELIKY--------KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKS 530
Query: 679 EGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
+ SE+ K V KQ+ + +K+ + +PK SGKI+R+ LR
Sbjct: 531 KDSELSEDDVKQF---VSKQVVFYKRINKVFFTESIPKAPSGKILRKDLR 577
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 116/520 (22%), Positives = 205/520 (39%), Gaps = 63/520 (12%)
Query: 226 DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285
+P D +TY+Q+ + A+ L +G+ KGD V + +P +E A++GAV
Sbjct: 37 EPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAV 96
Query: 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL 345
+ ++ ++ + D KVVI P A ++DA + G D
Sbjct: 97 PINTRLAAPEVSFILSDSGSKVVIYG-----APSA----PVIDAIRAQADPPGTVTD--- 144
Query: 346 TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 405
W G D + + + VE +D LF++YTSG+TG PKGV
Sbjct: 145 --------------WI-GADSLAERLRSAAADEPAVE-CGGDDNLFIMYTSGTTGHPKGV 188
Query: 406 LHTTGGYMVHT-ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGA 464
+HT VH+ A+++ D + D + + V + M G +++
Sbjct: 189 VHTHES--VHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM--- 242
Query: 465 PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS 524
P + D+ + W ++ + +V I P ++ + MR E+ R + G P+ P
Sbjct: 243 PQF-DATKVWSLIVEERVCIGGAVPAIL-NFMRQVPEF-AELDAPDFRYFITGGAPM-PE 298
Query: 525 AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 584
A + + + TE+ G L +K GSA + + G
Sbjct: 299 A---LIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDG 355
Query: 585 VEIEGECSGYLCIKS--------SWPGAFRTLYGDHERYETTYFKPF--PGYYFTGDG-- 632
V I G + IKS + P A R + D+ + T GY + D
Sbjct: 356 V-IREHGEGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLK 413
Query: 633 ---CSSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRK 689
S G + AE+ES ++ P G+ I A + + + SE+
Sbjct: 414 DMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGE-IAAAIVVADQNEVSEQ--- 469
Query: 690 SLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
+V ++ + P K+ +A +P+ +GKI++ +LR+
Sbjct: 470 QIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLRE 509
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 112/534 (20%), Positives = 201/534 (37%), Gaps = 76/534 (14%)
Query: 217 KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276
K+AI A D ++Y++L+ + ++AN L G++ GD V +E + LA
Sbjct: 18 KLAIETAAGD-----KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLA 72
Query: 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK 336
R G V+ + ++ L I D +PK+V+ + + G AI AK
Sbjct: 73 TVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAI------------AAK 120
Query: 337 SGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTS 396
G +V+ T DGR ++ A+D +LYTS
Sbjct: 121 VGATVE---------------TLGPDGRGSLTDAAAGASEAFATIDR-GADDLAAILYTS 164
Query: 397 GSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGA 456
G+TG+ KG + ++ T Y + + P DV Y T+G +
Sbjct: 165 GTTGRSKGAXLSHDNLASNSLTLVDY-WRFTPDDVLIHALPI-------YHTHGLFVASN 216
Query: 457 SVVVFEGAPTYPDSGRSWDIVD-KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
+ G+ + I+D + T+ PT L++ + +T+ + R+
Sbjct: 217 VTLFARGSXIFLPKFDPDKILDLXARATVLXGVPTFYTRLLQ--SPRLTKETTGHXRLFI 274
Query: 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV 575
S P+ R + G + + + + TET P G + PG+ GV
Sbjct: 275 SGSAPLLADTHREWSAKTGHA---VLERYGXTETNXNTSNPYDG--DRVPGAVGPALPGV 329
Query: 576 QPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD--- 631
+ D E G E+ G + +K P F+ + E+ ++ + G++ TGD
Sbjct: 330 SARVTDPETGKELPRGDIGXIEVKG--PNVFKGYWRXPEKTKSEFRDD--GFFITGDLGK 385
Query: 632 ----------------GCSSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFV 675
+ G + E+ES + + P G+G+ A V
Sbjct: 386 IDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAVV 445
Query: 676 TLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
+G E ++ + Q+ F P K+ + LP+ GK+ + +LR+
Sbjct: 446 VRDKGATIDE---AQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNVLRE 496
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 113/528 (21%), Positives = 195/528 (36%), Gaps = 70/528 (13%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+ L+Y +L + LA L + G+ KGD ++ LP + E I A + G V
Sbjct: 53 ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALY 112
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
L I +PK++I S R + +D+ D +S ++ L +
Sbjct: 113 SHRQYELNAFIKQIQPKLLIGS----RQHEVFSNNQFIDSLHD----VNLSPEIILMLNH 164
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW--VDAEDPLFLLYTSGSTGKPKGVLH 407
Q+ D D + + P + V++ A++ F + GSTG PK +
Sbjct: 165 QAT------------DFGLLDWI-ETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPR 211
Query: 408 TTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP----MLNGASVVVFEG 463
T Y + + + + C H+++ P +L+ VV
Sbjct: 212 THNDYDYSVRASAEICGLNSNTRLL-----CALPAPHNFMLSSPGALGVLHAGGCVVM-- 264
Query: 464 APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523
AP P+ + I+ +++V + P+ V + +Y + +SL++L G
Sbjct: 265 APN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQI--QSLKLLQVGGASFPE 321
Query: 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV-IVDE 582
S R V+ C + + E G T L + Q + P + IVDE
Sbjct: 322 SLARQVPEVLN---CKLQQVFGMAE-GLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDE 377
Query: 583 KGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSS------ 635
+ E+ EGE G L + P F Y E + + YY++GD
Sbjct: 378 QYREVPEGEI-GMLATRG--PYTFCGYYQSPEHNSQVFDE--DNYYYSGDLVQRTPDGNL 432
Query: 636 -------------GHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVP 682
G +I + E+E ++ HP+ G+ AF+
Sbjct: 433 RVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL 492
Query: 683 YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 730
+ LR+ L + I + PD+I LP T GK+ ++ LR I
Sbjct: 493 KAVVLRRHL---MELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSI 537
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 118/278 (42%), Gaps = 37/278 (13%)
Query: 226 DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285
+P D +TY+Q+ + A+ L +G+ KGD V + +P +E A++GAV
Sbjct: 23 EPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAV 82
Query: 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL 345
+ ++ ++ + D KVVI P A ++DA + G D
Sbjct: 83 PINTRLAAPEVSFILSDSGSKVVIYG-----APSA----PVIDAIRAQADPPGTVTD--- 130
Query: 346 TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 405
W G D + + + VE +D LF++YTSG+TG PKGV
Sbjct: 131 --------------WI-GADSLAERLRSAAADEPAVE-CGGDDNLFIMYTSGTTGHPKGV 174
Query: 406 LHTTGGYMVHT-ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGA 464
+HT VH+ A+++ D + D + + V + M G +++
Sbjct: 175 VHTHES--VHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM--- 228
Query: 465 PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
P + D+ + W ++ + +V I P ++ + MR E+
Sbjct: 229 PQF-DATKVWSLIVEERVCIGGAVPAIL-NFMRQVPEF 264
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/568 (21%), Positives = 214/568 (37%), Gaps = 94/568 (16%)
Query: 202 CYNCLDRNIEAGLGDKVAI-----YWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKK 256
+ L R+ A GD++AI +W +Y +L + +LA + +G+++
Sbjct: 26 TFGDLLRDRAAKYGDRIAITCGNTHW-----------SYRELDTRADRLAAGFQKLGIQQ 74
Query: 257 GDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKR 316
D V++ LP + E + A R+GA+ VFA S ++ C+ A
Sbjct: 75 KDRVVVQLPNIKEFFEVIFALFRLGALP--VFA-LPSHRSSEITYFCE----FAEAAAYI 127
Query: 317 GPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP 376
P A D A +K ++ + E + + E+ + P
Sbjct: 128 IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTE--------------P 173
Query: 377 TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-FDYKPSDVYWCT 435
K + V + D FL + GSTG K + T Y+ + + D+ S VY
Sbjct: 174 VK--LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH--STVYLA- 228
Query: 436 ADCGWITGHSYVTYGP----MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491
H+Y P +L VV +P+ PD ++ ++++ KVTI P L
Sbjct: 229 ---ALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPS-PDD--AFPLIEREKVTITALVPPL 282
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
M + R SL+VL G + A R V G C + + E G
Sbjct: 283 AMVWMDAASS--RRDDLSSLQVLQVGGAKFSAEAARRVKAVFG---CTLQQVFGMAE-GL 336
Query: 552 FMITPLPGAWPQK-----PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR 606
T L P++ G P+ + + D+ +++ +G+L + P R
Sbjct: 337 VNYTRLDD--PEEIIVNTQGKPMSPY--DESRVWDDHDRDVKPGETGHLLTRG--PYTIR 390
Query: 607 TLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESA 647
Y E ++ + G+Y TGD G ++ EVE+
Sbjct: 391 GYYKAEEHNAASFTED--GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENH 448
Query: 648 LVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDK 707
L++HP G+ F+ + P + EL+ L + + A+ PD+
Sbjct: 449 LLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLR---ERGLAAYKIPDR 505
Query: 708 IHWAPGLPKTRSGKIMRRILRKIASRQL 735
+ + P+T GK+ ++ LR+ S +L
Sbjct: 506 VEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 63/318 (19%)
Query: 183 DVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQV 242
D+R +E G C + L A D VA+ EA++ LTY L ++
Sbjct: 60 DLRPTGPAVERAPAGA---CVHELFEAQAARAPDAVALLHEADE------LTYGALNERA 110
Query: 243 CQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD 302
+LA+ L +GV G V ++L ++ +A+LA + G ++++ F + LA + D
Sbjct: 111 NRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLED 170
Query: 303 CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQD 362
+++TS + ++ L E+++A
Sbjct: 171 TGAPLLVTSRPL---------------------SGRLTGTTTLYVEDEAAS--------- 200
Query: 363 GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY 422
P V ED +++TSGSTG+PKGV+ H A T Y
Sbjct: 201 -----------DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSP------HRALTGTY 243
Query: 423 -AFDYK---PSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD 478
DY P +V+ + W +G +L GA V+ G PD ++V
Sbjct: 244 LGQDYAGFGPDEVFLQCSPVSW-DAFGLELFGALLFGARCVLQSG--QNPDPLEIGELVA 300
Query: 479 KYKVTIFYTAPTLVRSLM 496
++ VT+ + +L L+
Sbjct: 301 RHGVTMLQLSASLFNFLV 318
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 636 GHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTL--VEGVPYSEELRKSLVL 693
G R+ EVE+ LV HP + + A+V + P + ELR+
Sbjct: 476 GFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRH--- 532
Query: 694 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
V + + A+ P + LP+T +GK+ RR L
Sbjct: 533 -VAEALPAYMVPVECVPVDELPRTPNGKLDRRAL 565
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 63/318 (19%)
Query: 183 DVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQV 242
D+R +E G C + L A D VA+ EA++ LTY L ++
Sbjct: 60 DLRPTGPAVERAPAGA---CVHELFEAQAARAPDAVALLHEADE------LTYGALNERA 110
Query: 243 CQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD 302
+LA+ L +GV G V ++L ++ +A+LA + G ++++ F + LA + D
Sbjct: 111 NRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLED 170
Query: 303 CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQD 362
+++TS + ++ L E+++A
Sbjct: 171 TGAPLLVTSRPL---------------------SGRLTGTTTLYVEDEAAS--------- 200
Query: 363 GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY 422
P V ED +++TSGSTG+PKGV+ H A T Y
Sbjct: 201 -----------DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSP------HRALTGTY 243
Query: 423 -AFDYK---PSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD 478
DY P +V+ + W +G +L GA V+ G PD ++V
Sbjct: 244 LGQDYAGFGPDEVFLQCSPVSW-DAFGLELFGALLFGARCVLQSG--QNPDPLEIGELVA 300
Query: 479 KYKVTIFYTAPTLVRSLM 496
++ VT+ + +L L+
Sbjct: 301 RHGVTMLQLSASLFNFLV 318
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/391 (21%), Positives = 148/391 (37%), Gaps = 52/391 (13%)
Query: 365 DIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF 424
D+ + VP+ + D DP ++YTSG+TG PKG + + T A+
Sbjct: 140 DVRARGAVPE-------DGADDGDPALVVYTSGTTGPPKGAV-IPRRALATTLDALADAW 191
Query: 425 DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTI 484
+ DV + G GP+ G SV + G + ++ D T+
Sbjct: 192 QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG---RFSTEGAARELND--GATM 246
Query: 485 FYTAPTL---VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541
+ PT+ + + E + L V GS P++ + + +
Sbjct: 247 LFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHE-----RIAAATGRRVI 301
Query: 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI---EGECSGYLCIK 598
+ + TET M T + + G+ P GV+ +V+E G I +GE G + ++
Sbjct: 302 ERYGMTET--LMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVR 359
Query: 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC--------------------SSGHR 638
P F T Y + F G++ TGD S G++
Sbjct: 360 G--PNLF-TEYLNRPDATAAAFTED-GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYK 415
Query: 639 IGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ 698
IG E+E+AL+ HP+ G+ I A++ V P + +L V +
Sbjct: 416 IGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWI--VPADPAAPPALGTLADHVAAR 473
Query: 699 IGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
+ P + + +P+ GKIM+R L +
Sbjct: 474 LAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 104/518 (20%), Positives = 184/518 (35%), Gaps = 68/518 (13%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
++Y++L+ + ++AN L G++ GD V +E + LA R G V+ + ++
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
L I D +P +V+ + + D
Sbjct: 89 LHELDYFITDAEPXIVVCDPSXR--------------------------DGIAAIAAXVG 122
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
T E T DGR ++ A+D +LYTSG+TG+ G + +
Sbjct: 123 ATVE-TLGPDGRGSLTDAAAGASEAFATIDR-GADDLAAILYTSGTTGRSXGAMLSHDNL 180
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGR 472
++ T Y + + P DV Y T+G + + G+ +
Sbjct: 181 ASNSLTLVDY-WRFTPDDVLIHALPI-------YHTHGLFVASNVTLFARGSMIFLPXFD 232
Query: 473 SWDIVDKY-KVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 531
I+D + T+ PT L++ + +T + +R+ S P+ R +
Sbjct: 233 PDXILDLMARATVLMGVPTFYTRLLQ--SPRLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 532 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGE 590
G + + + + TET M T P + PG+ GV + D E G E+
Sbjct: 291 XTGHA---VLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRG 345
Query: 591 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD------------------- 631
G I+ P F + E + + G++ TGD
Sbjct: 346 DIG--MIEVXGPNVFXGYWRMPEXTXSEFRDD--GFFITGDLGXIDERGYVHILGRGXDL 401
Query: 632 GCSSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSL 691
+ G + E+ES + + P G+G+ AFV L SE L + L
Sbjct: 402 VITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEEL 461
Query: 692 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
V ++ F P + + LP+ G + +LR+
Sbjct: 462 XAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 499
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 123/568 (21%), Positives = 215/568 (37%), Gaps = 94/568 (16%)
Query: 202 CYNCLDRNIEAGLGDKVAI-----YWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKK 256
+ L R+ A GD++AI +W +Y +L + +LA + +G+++
Sbjct: 26 TFGDLLRDRAAKYGDRIAITCGNTHW-----------SYRELDTRADRLAAGFQKLGIQQ 74
Query: 257 GDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKR 316
D V++ LP + E + A R+GA+ VFA S ++ C+ A
Sbjct: 75 KDRVVVQLPNIKEFFEVIFALFRLGALP--VFA-LPSHRSSEITYFCE----FAEAAAYI 127
Query: 317 GPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP 376
P A D A +K ++ + E + + E+ + P
Sbjct: 128 IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTE--------------P 173
Query: 377 TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-FDYKPSDVYWCT 435
K + V + D FL + GSTG K + T Y+ + + D+ S VY
Sbjct: 174 VK--LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH--STVYLA- 228
Query: 436 ADCGWITGHSYVTYGP----MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491
H+Y P +L VV +P+ PD ++ ++++ KVTI P L
Sbjct: 229 ---ALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPS-PDD--AFPLIEREKVTITALVPPL 282
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
+ R SL+VL G + A R V G C + + E G
Sbjct: 283 AXVWXDAASS--RRDDLSSLQVLQVGGAKFSAEAARRVKAVFG---CTLQQVFGXAE-GL 336
Query: 552 FMITPLPGAWPQK-----PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR 606
T L P++ G P+ + + D+ +++ +G+L + P R
Sbjct: 337 VNYTRLDD--PEEIIVNTQGKPXSPY--DESRVWDDHDRDVKPGETGHLLTRG--PYTIR 390
Query: 607 TLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESA 647
Y E ++ + G+Y TGD G ++ EVE+
Sbjct: 391 GYYKAEEHNAASFTED--GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENH 448
Query: 648 LVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDK 707
L++HP G+ F+ + P + EL+ L + + A+ PD+
Sbjct: 449 LLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKAAELKAFLR---ERGLAAYKIPDR 505
Query: 708 IHWAPGLPKTRSGKIMRRILRKIASRQL 735
+ + P+T GK+ ++ LR+ S +L
Sbjct: 506 VEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 104/528 (19%), Positives = 189/528 (35%), Gaps = 70/528 (13%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
L+Y +L Q LA L+ G+K G+ ++ L + EL I A ++G +
Sbjct: 51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
L +P ++I A+ D D T+ + +
Sbjct: 111 RSELNAYASQIEPALLIADRQ-----HALFSGD----------------DFLNTFVTEHS 149
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
R D + QD + A++ + + G+TG PK + T Y
Sbjct: 150 SIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDY 209
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP-----MLNGASVVVFEGAPTY 467
+ + + Y C H+Y P L G +VV+
Sbjct: 210 YYSVRRSVEIC-QFTQQTRYLCAIPAA----HNYAMSSPGSLGVFLAGGTVVL----AAD 260
Query: 468 PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWR 527
P + + +++K++V + P V ++ E +R SL++L G ++ +
Sbjct: 261 PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAA 320
Query: 528 WFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV-IVDEKGVE 586
+G C + + E G T L + + + +P V + D +G
Sbjct: 321 RIPAEIG---CQLQQVFGMAE-GLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP 376
Query: 587 IEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------ 634
+ G L + P FR Y + + + G+Y +GD S
Sbjct: 377 LPQGEVGRLMTRG--PYTFRGYYKSPQHNASAF--DANGFYCSGDLISIDPEGYITVQGR 432
Query: 635 -------SGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEEL 687
G +I E+E+ L+ HP G+ A++ + E + + ++
Sbjct: 433 EKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL-RAVQV 491
Query: 688 RKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRK-IASR 733
R+ L R+Q I F PD++ LP T GK+ ++ LR+ +ASR
Sbjct: 492 RRFL----REQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 112/526 (21%), Positives = 200/526 (38%), Gaps = 92/526 (17%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+ LTY +L + QLA + G+ K V I + ++L I +LA + G + +
Sbjct: 62 NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDI 121
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
+ + + + D + ++++T HL ++ + +
Sbjct: 122 EYPKERIQYILDDSQARMLLTQK---------HLVHLIHN---------------IQFNG 157
Query: 350 QSAMTRENT-KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 408
Q + E+T K ++G ++ VP T D +++YTSG+TG PKG +
Sbjct: 158 QVEIFEEDTIKIREGTNLH----VPSKST----------DLAYVIYTSGTTGNPKGTMLE 203
Query: 409 TGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYP 468
G + + F+ + + D A + + + +L GAS+ + T
Sbjct: 204 HKG-ISNLKVFFENSLNVTEKDRIGQFASISF-DASVWEMFMALLTGASLYII-LKDTIN 260
Query: 469 DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWR- 527
D + +++ ++T+ PT V L D + S ++L GS P + W+
Sbjct: 261 DFVKFEQYINQKEITVITLPPTYVVHL--DPERIL---SIQTLITAGSATSPSLVNKWKE 315
Query: 528 --WFFNVVGDSRCPISDTWW--QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEK 583
+ N G + I T W ET G + P+ GA P Q IVDE
Sbjct: 316 KVTYINAYGPTETTICATTWVATKETIGHSV-PI-GA----------PIQNTQIYIVDEN 363
Query: 584 -GVEIEGECSGYLCI--KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------ 634
++ GE +G LCI + G ++ +++ F P Y TGD
Sbjct: 364 LQLKSVGE-AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGN 422
Query: 635 -------------SGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGV 681
GHR+ EVES L+ H + + A+ + +
Sbjct: 423 IEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI 482
Query: 682 PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
P E+LR+ +++ + P +P T +GKI R+ L
Sbjct: 483 PL-EQLRQ----FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 102/518 (19%), Positives = 183/518 (35%), Gaps = 71/518 (13%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
++Y++L+ + ++AN L G++ GD V +E + LA R G V+ + ++
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
L I D +P +V+ + + D
Sbjct: 89 LHELDYFITDAEPXIVVCDPSXR--------------------------DGIAAIAAXVG 122
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
T E T DGR ++ A+D +LYTSG+TG+ G + +
Sbjct: 123 ATVE-TLGPDGRGSLTDAAAGASEAFATIDR-GADDLAAILYTSGTTGRSXGAMLSHDNL 180
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGR 472
++ T Y + + P DV Y T+G + + G+ +
Sbjct: 181 ASNSLTLVDY-WRFTPDDVLIHALPI-------YHTHGLFVASNVTLFARGSMIFLPXFD 232
Query: 473 SWDIVDKY-KVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 531
I+D + T+ PT L++ + +T + +R+ S P+ R +
Sbjct: 233 PDXILDLMARATVLMGVPTFYTRLLQ--SPRLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 532 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGE 590
G + + + + TET M T P + PG+ GV + D E G E+
Sbjct: 291 XTGHA---VLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRG 345
Query: 591 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD------------------- 631
G I+ P F + E + + G++ TGD
Sbjct: 346 DIG--MIEVXGPNVFXGYWRMPEXTXSEFRD--DGFFITGDLGXIDERGYVHILGRGXDL 401
Query: 632 GCSSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSL 691
+ G + E+ES + + P G+G+ AFV L SE +
Sbjct: 402 VITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSE---AQV 458
Query: 692 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
+ + Q+ F P + + LP+ G + +LR+
Sbjct: 459 LHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 145/380 (38%), Gaps = 70/380 (18%)
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHT-ATTFKYAFDYKPSDVY-----------WCTADCG 439
+ YT+G+TG PKGV+++ ++H+ A + DV WC
Sbjct: 181 MAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAA 240
Query: 440 WITGHSYVTYGPMLNGASVV-VFEGAPTYPDSG--RSWDIVDKYKVTIFYTAPTLVRSLM 496
+ G V GP L+ AS+V +F+G +G W + Y + + TL R L+
Sbjct: 241 TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTL-RRLV 299
Query: 497 RDGN----EYVTRYSRKSLRVLGSVG-EPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
G+ + R+ R + V G +P + F +S + +TG
Sbjct: 300 VGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG- 358
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG--VEIEGECSGYLCIKSSW-PGAFRTL 608
P V+ + DE+G V +G+ G + +K W G +
Sbjct: 359 ------------------LPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGY--- 397
Query: 609 YGDHERYETTYFKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALV 649
YG+ E + P G++ TGD S G I + ++E+AL+
Sbjct: 398 YGNEEATRSA-LTP-DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM 455
Query: 650 SHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 709
HP+ + A V P EEL + L+ A + PD
Sbjct: 456 GHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKA---GFAKWQLPDAYV 512
Query: 710 WAPGLPKTRSGKIMRRILRK 729
+A +P+T +GK ++R LR+
Sbjct: 513 FAEEIPRTSAGKFLKRALRE 532
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 128/560 (22%), Positives = 213/560 (38%), Gaps = 92/560 (16%)
Query: 219 AIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278
AI + GVD +Y++ L++ C L L++ G+ + + E I ++A
Sbjct: 41 AIAFTNAVTGVD--YSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGL 98
Query: 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN-------AVKRGPKAIHLKDIVDAAL 331
IG + ++ L + KP +V +S V++ I I+D+ +
Sbjct: 99 FIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKV 158
Query: 332 D----ECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAE 387
D +C + I + Y+ S T VE E
Sbjct: 159 DYRGYQCLDTFIKRNTPPGYQASSFKT--------------------------VEVDRKE 192
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-YKPSDVYWCTADCGWITGHS- 445
++ +SGSTG PKGV T + T F +A D + V TA + H
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHE----NIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 446 ---YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
+ T G ++ G VV+ T D + YK T PTL L + +E
Sbjct: 249 FGMFTTLGYLICGFRVVML----TKFDEETFLKTLQDYKCTNVILVPTLFAILNK--SEL 302
Query: 503 VTRYSRKSLRVLGSVGEPINP---SAWRWFFNVVGDSRCPISDTWWQTE-TGGFMITPLP 558
+ +Y +L + S G P++ A FN+ G + + TE T +ITP
Sbjct: 303 LNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG-----VRQGYGLTETTSAIIITP-- 355
Query: 559 GAWPQKPGSA--TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW--------PGAFRTL 608
KPG++ P F + + +D K + G +C+K P A + L
Sbjct: 356 -EGDDKPGASGKVVPLFKAKVIDLDTKK-SLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413
Query: 609 YGDHERYETT----YFKPFPGYYFTGDGCSS-----GHRIGTAEVESALVSHPQCXXXXX 659
D E + T Y+ ++F D S G+++ AE+ES L+ HP
Sbjct: 414 I-DEEGWLHTGDIGYYDE-EKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGV 471
Query: 660 XXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI-GAFAAPDKIHWAPGLPKTR 718
G+ A V L G +E K ++ V Q+ A + + +PK
Sbjct: 472 AGVPDPVAGELPGAVVVLESGKNMTE---KEVMDYVASQVSNAKRLRGGVRFVDEVPKGL 528
Query: 719 SGKIMRRILRKIASRQLDEL 738
+GKI R +R+I + + ++
Sbjct: 529 TGKIDGRAIREILKKPVAKM 548
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 127/560 (22%), Positives = 213/560 (38%), Gaps = 92/560 (16%)
Query: 219 AIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278
AI + GVD +Y++ L++ C L L++ G+ + + E I ++A
Sbjct: 41 AIAFTNAVTGVD--YSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGL 98
Query: 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN-------AVKRGPKAIHLKDIVDAAL 331
IG + ++ L + KP +V +S V++ I I+D+ +
Sbjct: 99 FIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKV 158
Query: 332 D----ECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAE 387
D +C + I + ++ S T VE E
Sbjct: 159 DYRGYQCLDTFIKRNTPPGFQASSFKT--------------------------VEVDRKE 192
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-YKPSDVYWCTADCGWITGHS- 445
++ +SGSTG PKGV T + T F +A D + V TA + H
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHE----NIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 446 ---YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
+ T G ++ G VV+ T D + YK T PTL L + +E
Sbjct: 249 FGMFTTLGYLICGFRVVML----TKFDEETFLKTLQDYKCTSVILVPTLFAILNK--SEL 302
Query: 503 VTRYSRKSLRVLGSVGEPINP---SAWRWFFNVVGDSRCPISDTWWQTE-TGGFMITPLP 558
+ +Y +L + S G P++ A FN+ G + + TE T +ITP
Sbjct: 303 LNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG-----VRQGYGLTETTSAIIITP-- 355
Query: 559 GAWPQKPGSA--TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW--------PGAFRTL 608
KPG++ P F + + +D K + G +C+K P A + L
Sbjct: 356 -EGDDKPGASGKVVPLFKAKVIDLDTKK-SLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413
Query: 609 YGDHERYETT----YFKPFPGYYFTGDGCSS-----GHRIGTAEVESALVSHPQCXXXXX 659
D E + T Y+ ++F D S G+++ AE+ES L+ HP
Sbjct: 414 I-DEEGWLHTGDIGYYDE-EKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGV 471
Query: 660 XXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI-GAFAAPDKIHWAPGLPKTR 718
G+ A V L G +E K ++ V Q+ A + + +PK
Sbjct: 472 AGVPDPVAGELPGAVVVLESGKNMTE---KEVMDYVASQVSNAKRLRGGVRFVDEVPKGL 528
Query: 719 SGKIMRRILRKIASRQLDEL 738
+GKI R +R+I + + ++
Sbjct: 529 TGKIDGRAIREILKKPVAKM 548
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 126/553 (22%), Positives = 208/553 (37%), Gaps = 106/553 (19%)
Query: 226 DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285
D ++ +TY++ + +LA +K G+ +++ ++ + +L IG +
Sbjct: 49 DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVA 108
Query: 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD-ECAKSGISVDVC 344
++ L + +P VV S K+G L+ I++ + I +D
Sbjct: 109 PANDCYNERELLNSMNISQPTVVFVS---KKG-----LQKILNVQKKLPIIQKIIIMDSK 160
Query: 345 LTYEN-QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY-TSGSTGKP 402
Y+ QS T + G + + D VP E D + + L+ +SGSTG P
Sbjct: 161 TDYQGFQSMYTFVTSHLPPGFNEY--DFVP--------ESFDRDKTIALIMNSSGSTGLP 210
Query: 403 KGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHS----YVTYGPMLNG 455
KGV + H A +++ P + + TA + H + T G +++G
Sbjct: 211 KGVA------LPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISG 264
Query: 456 ASVVV---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
VV+ FE RS + YK+ PTL L + + + +Y +L
Sbjct: 265 FRVVLMYRFEEELFL----RS---LQDYKIQSALLVPTLFSFLAK--STLIDKYDLSNLH 315
Query: 513 VLGSVGEPINP---SAWRWFFNVVGDSRCPISDTWWQTE-TGGFMITPLPGAWPQKPGSA 568
+ S G P++ A F++ G I + TE T +ITP KPG+
Sbjct: 316 EIASGGAPLSKEVGEAVAKRFHLPG-----IRQGYGLTETTSAILITP---KGDDKPGAV 367
Query: 569 --TFPFFGVQPVIVDEK---GVEIEGEC--------SGY---------LCIKSSWPGAFR 606
PFF + V +D GV GE SGY L K W +
Sbjct: 368 GKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGD 427
Query: 607 TLYGDHERYETTYFKPFPGYYFTGDGCSS-----GHRIGTAEVESALVSHPQCXXXXXXX 661
Y D + ++F D S G ++ AE+ES L+ HP
Sbjct: 428 IAYWDEDE-----------HFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAG 476
Query: 662 XXXXXKGQGIYAFVTLVEGVPYSE----ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 717
G+ A V L G +E + S V +K G D++ PK
Sbjct: 477 LPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEV------PKG 530
Query: 718 RSGKIMRRILRKI 730
+GK+ R +R+I
Sbjct: 531 LTGKLDARKIREI 543
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/387 (25%), Positives = 154/387 (39%), Gaps = 53/387 (13%)
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-YKPSDVYWCTADCG 439
VE E ++ +SGSTG PKGV T + T F +A D + V TA
Sbjct: 186 VEVDRKEQVALIMNSSGSTGLPKGVQLTHE----NIVTRFSHARDPIYGNQVSPGTAVLT 241
Query: 440 WITGHS----YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495
+ H + T G ++ G VV+ T D + YK T PTL L
Sbjct: 242 VVPFHHGFGMFTTLGYLICGFRVVML----TKFDEETFLKTLQDYKCTSVILVPTLFAIL 297
Query: 496 MRDGNEYVTRYSRKSLRVLGSVGEPINP---SAWRWFFNVVGDSRCPISDTWWQTE-TGG 551
+ +E + +Y +L + S G P++ A FN+ G + + TE T
Sbjct: 298 NK--SELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG-----VRQGYGLTETTSA 350
Query: 552 FMITPLPGAWPQKPGSA--TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW-------- 601
+ITP KPG++ P F + + +D K + G +C+K
Sbjct: 351 IIITP---EGDDKPGASGKVVPLFKAKVIDLDTKK-SLGPNRRGEVCVKGPMLMKGYVNN 406
Query: 602 PGAFRTLYGDHERYETT----YFKPFPGYYFTGDGCSS-----GHRIGTAEVESALVSHP 652
P A + L D E + T Y+ ++F D S G+++ AE+ES L+ HP
Sbjct: 407 PEATKELI-DEEGWLHTGDIGYYDE-EKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHP 464
Query: 653 QCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI-GAFAAPDKIHWA 711
G+ A V L G +E K ++ V Q+ A + +
Sbjct: 465 SIFDAGVAGVPDPVAGELPGAVVVLESGKNMTE---KEVMDYVASQVSNAKRLRGGVRFV 521
Query: 712 PGLPKTRSGKIMRRILRKIASRQLDEL 738
+PK +GKI R +R+I + + ++
Sbjct: 522 DEVPKGLTGKIDGRAIREILKKPVAKM 548
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 100/518 (19%), Positives = 181/518 (34%), Gaps = 71/518 (13%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
++Y++L+ + ++AN L G++ GD V +E + LA R G V+ + ++
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
L I D +P +V+ + + D
Sbjct: 89 LHELDYFITDAEPXIVVCDPSXR--------------------------DGIAAIAAXVG 122
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
T E T DGR ++ A+D +LYTSG+TG+ G + +
Sbjct: 123 ATVE-TLGPDGRGSLTDAAAGASEAFATIDR-GADDLAAILYTSGTTGRSXGAMLSHDNL 180
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGR 472
++ T Y + + P DV Y T+G + + G+ +
Sbjct: 181 ASNSLTLVDY-WRFTPDDVLIHALPI-------YHTHGLFVASNVTLFARGSMIFLPXFD 232
Query: 473 SWDIVDKY-KVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 531
I+D + T+ PT L++ + +T + +R+ S P+ R +
Sbjct: 233 PDXILDLMARATVLMGVPTFYTRLLQ--SPRLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 532 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGE 590
G + + + + TET M T P + PG+ GV + D E G E+
Sbjct: 291 XTGHA---VLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRG 345
Query: 591 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD------------------- 631
G I+ P F + E + + G++ TGD
Sbjct: 346 DIG--MIEVXGPNVFXGYWRMPEXTXSEFRD--DGFFITGDLGXIDERGYVHILGRGXDL 401
Query: 632 GCSSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSL 691
+ G + E+ES + + P G+G+ A V G E +
Sbjct: 402 VITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDE---AQV 458
Query: 692 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
+ + Q+ F P + + LP+ G + +LR+
Sbjct: 459 LHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 114/524 (21%), Positives = 185/524 (35%), Gaps = 87/524 (16%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
LT+ L + +LA+ L GV GD V I E+ + A A IGA+ V +
Sbjct: 32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
+D +A + D P VV+ +DIV L
Sbjct: 92 ADEIAFVLGDGAPSVVVAGT---------DYRDIVAGVLPSLGG---------------- 126
Query: 353 MTRENTKWQDGRDIW--WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG 410
++ DG + ++D+ P A D +++T+ G+P+G L + G
Sbjct: 127 -VKKAYAIGDGSGPFAPFKDLASDTPFSAP--EFGAADGFVIIHTAAVGGRPRGALISQG 183
Query: 411 GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDS 470
++ ++ A+ +DV +TG + GASV+ + D
Sbjct: 184 NLLIAQSSLVD-AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF-----DP 237
Query: 471 GRSWDIVDKYKVTIFYT-APTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 529
++ ++ +KVT+ AP L GN + + + L L +V P F
Sbjct: 238 AQAARDIEAHKVTVMAEFAPML-------GN-ILDQAAPAQLASLRAVTGLDTPETIERF 289
Query: 530 FNVVGDSRCPISDTWW---QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 586
++ CP + W Q+ET G + T P + +P SA P F +VD +
Sbjct: 290 -----EATCPNATFWATFGQSETSG-LSTFAP--YRDRPKSAGRPLFWRTVAVVDAEDRP 341
Query: 587 IE-GECS-----GYLCIKSSWPGAFRTLY---------GDHERYETTYFKPFPGYYFTGD 631
+ GE G K W A T + GD R++ GY F
Sbjct: 342 LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDAD------GYLFYAG 395
Query: 632 GC-------SSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYS 684
+ G + AEVE AL HP + I A G +
Sbjct: 396 RAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIA 455
Query: 685 EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
+ V ++ I + P + + LPK G I R ++
Sbjct: 456 ADALAEFVASL---IARYKKPKHVVFVEALPKDAKGAIDRAAVK 496
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 28/177 (15%)
Query: 229 VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF 288
++ T TY QL Q +A L+ G K GD V++ + L A L C G + ++
Sbjct: 37 LEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY 96
Query: 289 AGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE 348
++++D ++V S V A H+K L+ K + L
Sbjct: 97 P-----PAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIPAIAL--- 148
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 405
+S ++ WQ PT + + D FL YTSGST PKGV
Sbjct: 149 -ESIELNRSSSWQ--------------PTS-----IKSNDIAFLQYTSGSTXHPKGV 185
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 124/554 (22%), Positives = 206/554 (37%), Gaps = 106/554 (19%)
Query: 225 NDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVH 284
D ++ +TY++ + +LA +K G+ +++ ++ + +L IG
Sbjct: 48 TDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAV 107
Query: 285 SVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD-ECAKSGISVDV 343
+ ++ L + +P VV S K+G L+ I++ + I +D
Sbjct: 108 APANDIYNERELLNSMNISQPTVVFVS---KKG-----LQKILNVQKKLPIIQKIIIMDS 159
Query: 344 CLTYEN-QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY-TSGSTGK 401
Y+ QS T + G + + D VP E D + + L+ +SGSTG
Sbjct: 160 KTDYQGFQSMYTFVTSHLPPGFNEY--DFVP--------ESFDRDKTIALIMNSSGSTGL 209
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHS----YVTYGPMLN 454
PKGV + H +++ P + + TA + H + T G ++
Sbjct: 210 PKGVA------LPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 263
Query: 455 GASVVV---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
G VV+ FE RS + YK+ PTL + + + +Y +L
Sbjct: 264 GFRVVLMYRFEEELFL----RS---LQDYKIQSALLVPTLFSFFAK--STLIDKYDLSNL 314
Query: 512 RVLGSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTET-GGFMITPLPGAWPQKPGS 567
+ S G P++ A F++ G I + TET +ITP KPG+
Sbjct: 315 HEIASGGAPLSKEVGEAVAKRFHLPG-----IRQGYGLTETTSAILITP---EGDDKPGA 366
Query: 568 A--TFPFFGVQPVIVDEK---GVEIEGEC--------SGY---------LCIKSSWPGAF 605
PFF + V +D GV GE SGY L K W +
Sbjct: 367 VGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 426
Query: 606 RTLYGDHERYETTYFKPFPGYYFTGDGCSS-----GHRIGTAEVESALVSHPQCXXXXXX 660
Y D + + +F D S G+++ AE+ES L+ HP
Sbjct: 427 DIAYWDEDEH-----------FFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 475
Query: 661 XXXXXXKGQGIYAFVTLVEGVPYSE----ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 716
G+ A V L G +E + S V +K G D++ PK
Sbjct: 476 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEV------PK 529
Query: 717 TRSGKIMRRILRKI 730
+GK+ R +R+I
Sbjct: 530 GLTGKLDARKIREI 543
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 124/554 (22%), Positives = 206/554 (37%), Gaps = 106/554 (19%)
Query: 225 NDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVH 284
D ++ +TY++ + +LA +K G+ +++ ++ + +L IG
Sbjct: 43 TDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAV 102
Query: 285 SVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD-ECAKSGISVDV 343
+ ++ L + +P VV S K+G L+ I++ + I +D
Sbjct: 103 APANDIYNERELLNSMNISQPTVVFVS---KKG-----LQKILNVQKKLPIIQKIIIMDS 154
Query: 344 CLTYEN-QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY-TSGSTGK 401
Y+ QS T + G + + D VP E D + + L+ +SGSTG
Sbjct: 155 KTDYQGFQSMYTFVTSHLPPGFNEY--DFVP--------ESFDRDKTIALIMNSSGSTGL 204
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHS----YVTYGPMLN 454
PKGV + H +++ P + + TA + H + T G ++
Sbjct: 205 PKGVA------LPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 258
Query: 455 GASVVV---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
G VV+ FE RS + YK+ PTL + + + +Y +L
Sbjct: 259 GFRVVLMYRFEEELFL----RS---LQDYKIQSALLVPTLFSFFAK--STLIDKYDLSNL 309
Query: 512 RVLGSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTET-GGFMITPLPGAWPQKPGS 567
+ S G P++ A F++ G I + TET +ITP KPG+
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPG-----IRQGYGLTETTSAILITP---EGDDKPGA 361
Query: 568 A--TFPFFGVQPVIVDEK---GVEIEGEC--------SGY---------LCIKSSWPGAF 605
PFF + V +D GV GE SGY L K W +
Sbjct: 362 VGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421
Query: 606 RTLYGDHERYETTYFKPFPGYYFTGDGCSS-----GHRIGTAEVESALVSHPQCXXXXXX 660
Y D + + +F D S G+++ AE+ES L+ HP
Sbjct: 422 DIAYWDEDEH-----------FFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 470
Query: 661 XXXXXXKGQGIYAFVTLVEGVPYSE----ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 716
G+ A V L G +E + S V +K G D++ PK
Sbjct: 471 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEV------PK 524
Query: 717 TRSGKIMRRILRKI 730
+GK+ R +R+I
Sbjct: 525 GLTGKLDARKIREI 538
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 124/554 (22%), Positives = 206/554 (37%), Gaps = 106/554 (19%)
Query: 225 NDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVH 284
D ++ +TY++ + +LA +K G+ +++ ++ + +L IG
Sbjct: 43 TDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAV 102
Query: 285 SVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD-ECAKSGISVDV 343
+ ++ L + +P VV S K+G L+ I++ + I +D
Sbjct: 103 APANDIYNERELLNSMNISQPTVVFVS---KKG-----LQKILNVQKKLPIIQKIIIMDS 154
Query: 344 CLTYEN-QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY-TSGSTGK 401
Y+ QS T + G + + D VP E D + + L+ +SGSTG
Sbjct: 155 KTDYQGFQSMYTFVTSHLPPGFNEY--DFVP--------ESFDRDKTIALIMNSSGSTGL 204
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHS----YVTYGPMLN 454
PKGV + H +++ P + + TA + H + T G ++
Sbjct: 205 PKGVA------LPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 258
Query: 455 GASVVV---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
G VV+ FE RS + YK+ PTL + + + +Y +L
Sbjct: 259 GFRVVLMYRFEEELFL----RS---LQDYKIQSALLVPTLFSFFAK--STLIDKYDLSNL 309
Query: 512 RVLGSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTET-GGFMITPLPGAWPQKPGS 567
+ S G P++ A F++ G I + TET +ITP KPG+
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPG-----IRQGYGLTETTSAILITP---EGDDKPGA 361
Query: 568 A--TFPFFGVQPVIVDEK---GVEIEGEC--------SGY---------LCIKSSWPGAF 605
PFF + V +D GV GE SGY L K W +
Sbjct: 362 VGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421
Query: 606 RTLYGDHERYETTYFKPFPGYYFTGDGCSS-----GHRIGTAEVESALVSHPQCXXXXXX 660
Y D + + +F D S G+++ AE+ES L+ HP
Sbjct: 422 DIAYWDEDEH-----------FFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 470
Query: 661 XXXXXXKGQGIYAFVTLVEGVPYSE----ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 716
G+ A V L G +E + S V +K G D++ PK
Sbjct: 471 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEV------PK 524
Query: 717 TRSGKIMRRILRKI 730
+GK+ R +R+I
Sbjct: 525 GLTGKLDARKIREI 538
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/396 (21%), Positives = 150/396 (37%), Gaps = 68/396 (17%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGV------LHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437
V +D ++++TSG+TG+PKGV L + +M+ A AFD A
Sbjct: 142 VKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA-----AFDVPKQP--QMLAQ 194
Query: 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
+ S + + P L + D + + + + V I+ + P+ M
Sbjct: 195 PPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAML 254
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFF---------NVVGDSRCPISDTWWQTE 548
+ + +L GE + S R F N G + ++ E
Sbjct: 255 SDD--FCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVA--LSAIE 310
Query: 549 TGGFMI---TPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAF 605
M+ T LP +P KP S T+ I+DE G E+ G + + + P
Sbjct: 311 ITREMVDNYTRLPIGYP-KPDSPTY--------IIDEDGKELSSGEQGEIIV--TGPAVS 359
Query: 606 RTLYGDHERYETTYF--KPFPGYYFTGDGCS-------------------SGHRIGTAEV 644
+ + E+ +F K P Y+ TGD S +G+RI +V
Sbjct: 360 KGYLNNPEKTAEAFFTFKGQPAYH-TGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDV 418
Query: 645 ESALVSHPQCXXXXXX-XXXXXXKGQGIYAFVTLVEGVP----YSEELRKSLVLAVRKQI 699
L P K Q + A++ + +GV EL K++ +V+ +
Sbjct: 419 SQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHM 478
Query: 700 GAFAAPDKIHWAPGLPKTRSGKI-MRRILRKIASRQ 734
++ P K + LP T +GKI ++ ++ ++ +R+
Sbjct: 479 MSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 138/375 (36%), Gaps = 64/375 (17%)
Query: 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHS-- 445
++ +SGSTG PKGV + H +++ P + + TA I H
Sbjct: 228 LIMNSSGSTGLPKGV------ELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGF 281
Query: 446 --YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
+ T G + G +V+ + + + D YK+ PTL + + V
Sbjct: 282 GMFTTLGYLTCGFRIVLMY---RFEEELFLRSLQD-YKIQSALLVPTLFSFFAK--STLV 335
Query: 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP-ISDTWWQTETGGFMITPLPGAWP 562
+Y +L + S G P+ V + P I + TET +I P
Sbjct: 336 DKYDLSNLHEIASGGAPLAKEVGEA---VAKRFKLPGIRQGYGLTETTSAIII-TPRGRD 391
Query: 563 QKPGS--ATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW--------PGAFRTLY--- 609
KPG+ PFF + V +D G + G LC+K P A L
Sbjct: 392 DKPGACGKVVPFFSAKIVDLD-TGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKD 450
Query: 610 -----GDHERYETTYFKPFPGYYFTGDGCSS-----GHRIGTAEVESALVSHPQCXXXXX 659
GD Y+ GY+F D S G+++ AE+ES L+ HP
Sbjct: 451 GWLHSGDIAYYDKD------GYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGV 504
Query: 660 XXXXXXXKGQGIYAFVTLVEGVPYSEE----LRKSLVLAVRKQIGAFAAPDKIHWAPGLP 715
G+ A V L EG +E+ V A ++ G D++ P
Sbjct: 505 AGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVDEV------P 558
Query: 716 KTRSGKIMRRILRKI 730
K +GKI R +R+I
Sbjct: 559 KGLTGKIDARKIREI 573
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 95/261 (36%), Gaps = 60/261 (22%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ A W DA +TY QL + LA+++ +++Y M E+ I L
Sbjct: 16 DQTAFVWR------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFL 69
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
C + G + V +D + + + K+++++ AV + D + +
Sbjct: 70 GCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVT----------VTDLPVRIVS 119
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ + D+ T++ + P++ K ++ +++YT
Sbjct: 120 EDNLK-DIFFTHKGNTPN-------------------PEHAVK-------GDENFYIIYT 152
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNG 455
SGSTG PKGV T + T W D TG ++ P
Sbjct: 153 SGSTGNPKGVQITYNCLVSFTK---------------WAVEDFNLQTGQVFLNQAPFSFD 197
Query: 456 ASVVVFEGAPTYPDSGRSWDI 476
SV+ + P+ G W I
Sbjct: 198 LSVM--DIYPSLVTGGTLWAI 216
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 42/187 (22%)
Query: 228 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA---CARIGAVH 284
GV TLT+SQL ++ +A L G GD V+I P +E +A L RI
Sbjct: 54 GVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPL 112
Query: 285 SVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL---DECAKSGISV 341
SV G + + + D P ++T+++ + D+V E S I V
Sbjct: 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSA--------VDDVVQHVARRPGESPPSIIEV 164
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
D+ +E+ +YP+ +L YTSGST
Sbjct: 165 DLLDLDAPNGYTFKED----------------EYPSTA-----------YLQYTSGSTRT 197
Query: 402 PKGVLHT 408
P GV+ +
Sbjct: 198 PAGVVXS 204
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 95/261 (36%), Gaps = 60/261 (22%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ A W DA +TY QL + LA+++ +++Y M E+ I L
Sbjct: 16 DQTAFVWR------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFL 69
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
C + G + V +D + + + K+++++ AV + D + +
Sbjct: 70 GCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVT----------VTDLPVRIVS 119
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ + D+ T++ + P++ K ++ +++YT
Sbjct: 120 EDNLK-DIFFTHKGNTPN-------------------PEHAVK-------GDENFYIIYT 152
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNG 455
SGSTG PKGV T + T W D TG ++ P
Sbjct: 153 SGSTGNPKGVQITYNCLVSFTK---------------WAVEDFNLQTGQVFLNQAPFSFD 197
Query: 456 ASVVVFEGAPTYPDSGRSWDI 476
SV+ + P+ G W I
Sbjct: 198 LSVM--DIYPSLVTGGTLWAI 216
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 42/187 (22%)
Query: 228 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA---CARIGAVH 284
GV TLT+SQL ++ +A L G GD V+I P +E +A L RI
Sbjct: 54 GVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPL 112
Query: 285 SVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL---DECAKSGISV 341
SV G + + + D P ++T+++ + D+V E S I V
Sbjct: 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSA--------VDDVVQHVARRPGESPPSIIEV 164
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
D+ +E+ +YP+ +L YTSGST
Sbjct: 165 DLLDLDAPNGYTFKED----------------EYPSTA-----------YLQYTSGSTRT 197
Query: 402 PKGVLHT 408
P GV+ +
Sbjct: 198 PAGVVMS 204
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 108/557 (19%), Positives = 202/557 (36%), Gaps = 91/557 (16%)
Query: 214 LGDKVAIYWEANDPGVDATLTYSQLLQQVCQ----LANYLKDIGVKKGDAVIIYLPMLME 269
G+K AI + +P + S ++C+ LA+ + GV+KG+ V + +P ++
Sbjct: 32 FGEKTAII--SAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID 89
Query: 270 LPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDA 329
+ A R+ A + + S L + D + ++ + + K +
Sbjct: 90 YVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYENFKPV-------- 141
Query: 330 ALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDP 389
K+G+ + E S ++ +D ++ V P+ ED
Sbjct: 142 ----LEKTGVERVFVVGGEVNSLSEVXDSGSEDFENV---KVNPE------------EDV 182
Query: 390 LFLLYTSGSTGKPKGVLHT-----TGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT-- 442
+ YT G+TG PKGV T + AT + + +A+ G +
Sbjct: 183 ALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGLVNLX 242
Query: 443 ---GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
G+ YV G N + + ++KYK T + P + L+
Sbjct: 243 VTVGNEYVVXG-XFNQEXLA---------------ENIEKYKGTFSWAVPPALNVLVNTL 286
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDS----RCPISDTWWQTETGGFMIT 555
Y L+V + P+ P+ + + R + W TE +T
Sbjct: 287 ESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACP-XVT 345
Query: 556 PLPGAWPQKPGSATFPFFGVQ-PVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHER 614
P K + P ++ VI E G E+ SG + I+ P F+ + +
Sbjct: 346 TNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRG--PNIFKGYWKREKE 403
Query: 615 YETTYFKPFPG--YYFTGDGC-------------------SSGHRIGTAEVESALVSHPQ 653
+ ++ G ++ TGD G+ I E+E+ L H
Sbjct: 404 NQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEA 463
Query: 654 CXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLA-VRKQIGAFAAPDKIHWAP 712
G+ AF+ L Y ++ + ++ VR++I + ++ +
Sbjct: 464 VXDVAVIGKPDEEAGEVPKAFIVL--KPEYRGKVDEEDIIEWVRERISGYKRVREVEFVE 521
Query: 713 GLPKTRSGKIMRRILRK 729
LP+T SGK++RR+LR+
Sbjct: 522 ELPRTASGKLLRRLLRE 538
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 87/228 (38%), Gaps = 59/228 (25%)
Query: 232 TLTYSQLLQQVCQLANYL-KDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
+LTY +L +Q + A + K I +K +++Y M + ++ L + G + V
Sbjct: 26 SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLS 85
Query: 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
S+ +A+ I +++I + +G+S+D + + Q
Sbjct: 86 IPSERIAKIIESSGAELLIHA-------------------------AGLSID-AVGQQIQ 119
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV----- 405
+ E + + G + + +WV + +++YTSGSTG PKGV
Sbjct: 120 TVSAEELLENEGG-------------SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAA 166
Query: 406 ------------LHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441
+GG + F +FD D+Y C G +
Sbjct: 167 NLQSFTDWICADFPVSGGKIFLNQAPF--SFDLSVMDLYPCLQSGGTL 212
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 16/62 (25%)
Query: 344 CLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPK 403
L +NQS + EN QD DI + YP E +DA +LLYTSGSTG PK
Sbjct: 148 VLDTKNQSFI--ENLSTQDTSDI-----LNNYP-----ENLDA----YLLYTSGSTGTPK 191
Query: 404 GV 405
GV
Sbjct: 192 GV 193
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 138/384 (35%), Gaps = 72/384 (18%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
AED +++YTSG+TG PKGV + A FD+ + D W+ HS
Sbjct: 174 AEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGA-PSVFDF--------SGDDRWLLFHS 224
Query: 446 -------YVTYGPMLNGASVVVFEG-APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
+ +G GA +VV A P+ + I+D+ VT+ PT +L
Sbjct: 225 LSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAV-IIDR-GVTVINQTPTAFLAL-- 280
Query: 498 DGNEYVTRYSR--KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW----WQTETGG 551
E R R LR + GE + R + G R + + + T
Sbjct: 281 --TEAAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTF 338
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611
IT A P FG + +V + G ++ +G L W + G
Sbjct: 339 EEITEAYLAQDASIIGRALPSFGTR--VVGDDGRDVAPGETGEL-----WLSGAQLAEGY 391
Query: 612 HERYETTYFKPFP-----------GYYFTGDGCSS-------------------GHRIGT 641
R E T K FP YY TGD S G+RI
Sbjct: 392 LRRPELTAEK-FPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIEL 450
Query: 642 AEVESALVSHPQCXXXXXXXXXXXXKG-QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 700
+++E+A+ H + + A+V + ELR ++ +
Sbjct: 451 SDIETAVRRHDDVVDAVVTVREFKPGDLRLVCAYVAREGSATTARELRNH----IKTLLP 506
Query: 701 AFAAPDKIHWAPGLPKTRSGKIMR 724
A+ P + PGLP+T +GK+ R
Sbjct: 507 AYMHPARYLPLPGLPRTVNGKVDR 530
>pdb|4GS5|A Chain A, The Crystal Structure Of Acyl-Coa Synthetase
(Amp-Forming)AMP-Acid Ligase Ii-Like Protein From
Dyadobacter Fermentans Dsm 18053
Length = 358
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYG 450
F+L+TSGSTG PK + T A T K A P + G+I G + G
Sbjct: 41 FVLHTSGSTGXPKPITVTRAQLAASAAXTGK-ALSLGPGTRALVCLNVGYIAGLXXLVRG 99
Query: 451 PMLN 454
L+
Sbjct: 100 XELD 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,501,022
Number of Sequences: 62578
Number of extensions: 1043775
Number of successful extensions: 2265
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2117
Number of HSP's gapped (non-prelim): 90
length of query: 759
length of database: 14,973,337
effective HSP length: 106
effective length of query: 653
effective length of database: 8,340,069
effective search space: 5446065057
effective search space used: 5446065057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)