Query 004348
Match_columns 759
No_of_seqs 419 out of 3077
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 22:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pg4_A Acetyl-COA synthetase; 100.0 2.5E-97 9E-102 873.8 66.0 618 129-757 9-645 (652)
2 1ry2_A Acetyl-coenzyme A synth 100.0 1.6E-97 5E-102 876.1 59.0 618 128-756 10-660 (663)
3 2vsq_A Surfactin synthetase su 100.0 3.3E-82 1.1E-86 798.3 40.5 553 103-733 382-960 (1304)
4 3etc_A AMP-binding protein; ad 100.0 6E-79 2E-83 707.9 56.8 505 192-733 48-579 (580)
5 3ni2_A 4-coumarate:COA ligase; 100.0 4.7E-77 1.6E-81 686.6 53.5 486 201-732 23-534 (536)
6 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.8E-77 9.6E-82 688.8 49.0 491 201-740 26-538 (539)
7 3c5e_A Acyl-coenzyme A synthet 100.0 4.7E-76 1.6E-80 682.4 56.4 501 192-734 30-563 (570)
8 3g7s_A Long-chain-fatty-acid-- 100.0 1.7E-77 5.9E-82 692.3 43.3 493 201-734 20-543 (549)
9 3r44_A Fatty acyl COA syntheta 100.0 1.2E-76 4.3E-81 679.9 49.7 480 201-735 17-515 (517)
10 4fuq_A Malonyl COA synthetase; 100.0 2.5E-76 8.5E-81 675.1 51.6 477 204-733 4-500 (503)
11 4dg8_A PA1221; ANL superfamily 100.0 8.3E-77 2.8E-81 694.1 44.4 462 201-736 28-516 (620)
12 3rg2_A Enterobactin synthase c 100.0 1.1E-75 3.9E-80 686.1 52.7 487 201-735 28-536 (617)
13 1t5h_X 4-chlorobenzoyl COA lig 100.0 5E-75 1.7E-79 664.8 55.1 468 201-732 3-503 (504)
14 2d1s_A Luciferase, luciferin 4 100.0 1.1E-74 3.6E-79 668.4 53.4 490 201-737 26-547 (548)
15 3fce_A D-alanine--poly(phospho 100.0 5.5E-75 1.9E-79 665.8 46.5 478 202-734 3-505 (512)
16 1amu_A GRSA, gramicidin synthe 100.0 2.1E-75 7E-80 676.1 43.1 490 201-757 40-555 (563)
17 3e7w_A D-alanine--poly(phospho 100.0 2.1E-74 7.1E-79 660.8 48.6 477 202-734 3-504 (511)
18 2v7b_A Benzoate-coenzyme A lig 100.0 5.3E-74 1.8E-78 660.3 51.8 488 197-729 21-528 (529)
19 3tsy_A Fusion protein 4-coumar 100.0 1.6E-75 5.3E-80 719.6 40.9 548 124-734 7-583 (979)
20 3o83_A Peptide arylation enzym 100.0 1.3E-75 4.5E-80 675.6 37.0 487 201-733 31-540 (544)
21 4gr5_A Non-ribosomal peptide s 100.0 3.7E-75 1.3E-79 675.7 38.1 467 201-731 76-569 (570)
22 1v25_A Long-chain-fatty-acid-C 100.0 4.7E-75 1.6E-79 670.5 38.0 488 201-735 19-538 (541)
23 3ivr_A Putative long-chain-fat 100.0 6.1E-75 2.1E-79 664.9 37.9 474 201-734 7-502 (509)
24 3l8c_A D-alanine--poly(phospho 100.0 1.4E-73 4.9E-78 655.6 45.9 479 201-734 5-513 (521)
25 3rix_A Luciferase, luciferin 4 100.0 1.3E-74 4.3E-79 668.5 36.4 491 201-734 21-542 (550)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 1.5E-73 5.2E-78 652.3 39.1 456 201-729 23-504 (505)
27 3ipl_A 2-succinylbenzoate--COA 100.0 1.6E-71 5.4E-76 635.5 42.5 475 202-734 3-498 (501)
28 3kxw_A Saframycin MX1 syntheta 100.0 8.1E-70 2.8E-74 634.0 40.3 492 201-734 12-568 (590)
29 3ite_A SIDN siderophore synthe 100.0 6.1E-71 2.1E-75 639.5 29.5 495 201-748 21-560 (562)
30 3gqw_A Fatty acid AMP ligase; 100.0 3.9E-69 1.3E-73 626.3 39.3 489 200-737 21-567 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 5.4E-58 1.8E-62 520.6 28.1 395 201-634 25-469 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 2.8E-49 9.5E-54 431.1 23.8 297 386-733 36-354 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 2.3E-44 8E-49 403.5 29.8 311 384-726 82-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 4E-43 1.4E-47 394.3 28.0 318 383-728 88-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 6.4E-43 2.2E-47 391.9 27.7 314 383-726 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 3.9E-29 1.3E-33 273.5 16.8 197 384-599 88-320 (369)
37 3lax_A Phenylacetate-coenzyme 99.3 3.6E-12 1.2E-16 113.0 9.6 90 631-724 5-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.2 3.4E-11 1.2E-15 106.6 9.5 92 629-725 3-102 (109)
39 4eql_A 4-substituted benzoates 97.8 0.00035 1.2E-08 78.9 16.4 114 508-651 296-447 (581)
40 4epl_A Jasmonic acid-amido syn 97.6 0.0028 9.5E-08 71.4 20.5 142 508-679 301-489 (581)
41 4b2g_A GH3-1 auxin conjugating 97.6 0.0015 5.1E-08 73.9 17.6 28 384-411 96-124 (609)
42 2jgp_A Tyrocidine synthetase 3 93.6 0.005 1.7E-07 69.3 -3.3 59 104-164 460-518 (520)
43 4hvm_A Tlmii; PSI-biology, mid 91.2 0.02 6.8E-07 63.9 -2.4 59 103-164 408-469 (493)
44 2xhg_A Tyrocidine synthetase A 88.2 0.045 1.5E-06 60.4 -2.6 55 103-159 406-460 (466)
45 1l5a_A Amide synthase, VIBH; n 86.4 0.063 2.2E-06 58.5 -2.7 55 108-163 361-418 (436)
46 2y27_A Phenylacetate-coenzyme 84.6 4.3 0.00015 43.9 11.1 99 214-313 88-191 (437)
47 2y4o_A Phenylacetate-coenzyme 84.1 4.6 0.00016 43.8 11.0 99 214-313 90-193 (443)
48 3qov_A Phenylacetate-coenzyme 83.0 5 0.00017 43.3 10.7 97 216-313 86-187 (436)
49 3rix_A Luciferase, luciferin 4 68.3 17 0.00056 40.6 10.0 103 386-497 34-138 (550)
50 3hgu_A EHPF; phenazine, antibi 67.6 16 0.00056 38.1 9.3 98 214-313 89-214 (369)
51 3ivr_A Putative long-chain-fat 65.2 31 0.0011 37.8 11.4 96 385-494 19-116 (509)
52 1v25_A Long-chain-fatty-acid-C 62.9 56 0.0019 36.1 13.0 102 385-496 31-134 (541)
53 3c5e_A Acyl-coenzyme A synthet 62.4 56 0.0019 36.4 13.0 103 385-496 56-161 (570)
54 3g7s_A Long-chain-fatty-acid-- 61.8 83 0.0028 34.7 14.2 106 385-497 32-140 (549)
55 3ipl_A 2-succinylbenzoate--COA 59.9 81 0.0028 34.2 13.5 97 213-313 160-260 (501)
56 3o83_A Peptide arylation enzym 58.8 74 0.0025 35.1 13.1 97 213-313 188-290 (544)
57 1mdb_A 2,3-dihydroxybenzoate-A 58.0 89 0.003 34.4 13.5 97 213-313 179-281 (539)
58 2d1s_A Luciferase, luciferin 4 55.0 44 0.0015 37.0 10.4 96 216-313 192-292 (548)
59 3r44_A Fatty acyl COA syntheta 54.4 90 0.0031 34.1 12.7 95 214-313 168-267 (517)
60 1pg4_A Acetyl-COA synthetase; 48.7 72 0.0025 36.2 11.0 97 385-489 89-187 (652)
61 1ry2_A Acetyl-coenzyme A synth 48.1 77 0.0026 36.1 11.1 98 385-490 95-195 (663)
62 1t5h_X 4-chlorobenzoyl COA lig 47.8 1E+02 0.0035 33.5 11.8 99 385-495 15-117 (504)
63 3fce_A D-alanine--poly(phospho 46.5 72 0.0025 34.8 10.3 97 214-313 142-244 (512)
64 3t5a_A Long-chain-fatty-acid-- 46.2 1.3E+02 0.0046 32.0 12.4 108 385-498 37-149 (480)
65 3etc_A AMP-binding protein; ad 44.3 1E+02 0.0035 34.3 11.3 97 384-489 68-166 (580)
66 2zzt_A Putative uncharacterize 44.0 88 0.003 26.1 8.1 62 640-701 11-74 (107)
67 3ni2_A 4-coumarate:COA ligase; 42.7 79 0.0027 34.7 9.9 98 385-494 35-134 (536)
68 1amu_A GRSA, gramicidin synthe 42.7 1E+02 0.0035 34.1 10.9 97 385-495 52-150 (563)
69 3kxw_A Saframycin MX1 syntheta 42.0 90 0.0031 34.6 10.3 97 213-312 164-268 (590)
70 3e7w_A D-alanine--poly(phospho 42.0 1.2E+02 0.0039 33.1 11.0 97 214-313 141-243 (511)
71 3rg2_A Enterobactin synthase c 41.6 2.4E+02 0.0083 31.4 14.0 96 214-313 182-283 (617)
72 2v7b_A Benzoate-coenzyme A lig 38.3 90 0.0031 34.1 9.4 97 385-495 36-134 (529)
73 1yj7_A ESCJ; mixed alpha/beta, 35.8 91 0.0031 28.7 7.4 71 641-713 92-164 (171)
74 1q9j_A PAPA5, polyketide synth 35.5 4 0.00014 43.6 -2.4 49 104-159 371-420 (422)
75 3nyq_A Malonyl-COA ligase; A/B 34.7 2E+02 0.0067 31.2 11.4 96 213-313 152-252 (505)
76 3dzz_A Putative pyridoxal 5'-p 34.1 3.9E+02 0.013 27.1 17.7 65 254-321 106-177 (391)
77 3ri6_A O-acetylhomoserine sulf 34.1 1.8E+02 0.0063 30.9 10.8 72 254-327 118-190 (430)
78 2e7j_A SEP-tRNA:Cys-tRNA synth 31.8 3.3E+02 0.011 27.4 12.1 70 254-326 90-169 (371)
79 3tbh_A O-acetyl serine sulfhyd 31.0 1.7E+02 0.0058 30.0 9.5 66 247-313 60-127 (334)
80 2cvi_A 75AA long hypothetical 30.3 84 0.0029 24.6 5.5 47 641-700 15-61 (83)
81 3byp_A CZRB protein; membrane 30.0 1.6E+02 0.0056 23.5 7.4 62 640-701 11-76 (94)
82 1eg5_A Aminotransferase; PLP-d 30.0 2.4E+02 0.0083 28.6 10.7 72 254-326 86-161 (384)
83 4fuq_A Malonyl COA synthetase; 29.7 1.5E+02 0.005 32.2 9.2 81 406-491 28-110 (503)
84 3a2b_A Serine palmitoyltransfe 29.4 4.4E+02 0.015 26.9 12.7 70 254-327 124-196 (398)
85 4gs5_A Acyl-COA synthetase (AM 29.3 1.5E+02 0.0052 30.5 8.9 77 230-312 54-131 (358)
86 3isl_A Purine catabolism prote 27.2 3E+02 0.01 28.3 11.0 73 254-327 83-159 (416)
87 3kki_A CAI-1 autoinducer synth 27.0 2.8E+02 0.0095 28.7 10.7 70 254-327 140-209 (409)
88 3t18_A Aminotransferase class 26.6 5.4E+02 0.018 26.4 13.2 76 254-333 122-207 (413)
89 2zbc_A 83AA long hypothetical 25.8 1E+02 0.0036 23.8 5.3 47 641-700 15-61 (83)
90 4gr5_A Non-ribosomal peptide s 25.7 2E+02 0.0067 31.8 9.5 92 385-490 88-181 (570)
91 2y9j_Y Lipoprotein PRGK, prote 24.6 2.7E+02 0.0091 25.5 8.5 67 641-709 90-164 (170)
92 3ju7_A Putative PLP-dependent 24.5 1.5E+02 0.0053 30.7 7.9 61 248-311 69-136 (377)
93 3ndn_A O-succinylhomoserine su 24.4 3.7E+02 0.013 28.2 11.0 76 248-326 112-188 (414)
94 1elu_A L-cysteine/L-cystine C- 24.3 2.4E+02 0.0081 28.7 9.4 77 249-326 93-176 (390)
95 3ezx_A MMCP 1, monomethylamine 24.2 4.6E+02 0.016 24.8 10.9 81 439-527 104-193 (215)
96 2bkw_A Alanine-glyoxylate amin 24.1 4.5E+02 0.015 26.4 11.5 72 255-327 84-160 (385)
97 3tsy_A Fusion protein 4-coumar 23.8 2.5E+02 0.0085 33.4 10.5 97 384-492 73-171 (979)
98 2z9v_A Aspartate aminotransfer 23.4 3.1E+02 0.011 27.9 10.1 72 254-326 80-156 (392)
99 3ijw_A Aminoglycoside N3-acety 23.3 1E+02 0.0034 30.7 5.6 25 243-267 18-42 (268)
100 1t3i_A Probable cysteine desul 23.3 2.7E+02 0.0092 28.6 9.7 72 254-326 115-191 (420)
101 3l8c_A D-alanine--poly(phospho 22.8 2E+02 0.0067 31.2 8.7 79 406-489 29-109 (521)
102 2ayi_A Aminopeptidase T; metal 22.5 1.9E+02 0.0065 30.6 8.0 50 239-288 5-58 (408)
103 3rq1_A Aminotransferase class 22.1 6.5E+02 0.022 25.8 13.2 76 254-333 123-208 (418)
104 4hvk_A Probable cysteine desul 21.9 1.9E+02 0.0066 29.2 8.0 70 255-325 86-159 (382)
105 1e5e_A MGL, methionine gamma-l 21.8 3.2E+02 0.011 28.4 9.9 72 254-327 98-170 (404)
106 3fdb_A Beta C-S lyase, putativ 21.3 6.1E+02 0.021 25.4 11.8 65 254-322 102-168 (377)
107 2cb1_A O-acetyl homoserine sul 21.0 3E+02 0.01 28.7 9.4 71 254-327 92-163 (412)
108 4h1h_A LMO1638 protein; MCCF-l 20.8 2.7E+02 0.0091 28.4 8.6 63 253-315 8-89 (327)
109 2ch1_A 3-hydroxykynurenine tra 20.6 3.9E+02 0.013 27.2 10.2 72 254-326 90-165 (396)
110 4eb5_A Probable cysteine desul 20.3 1.8E+02 0.0062 29.6 7.3 70 255-325 86-159 (382)
111 3gqw_A Fatty acid AMP ligase; 20.2 3.2E+02 0.011 29.8 9.8 89 405-495 48-142 (576)
112 3kgw_A Alanine-glyoxylate amin 20.1 3.9E+02 0.013 27.0 10.0 72 254-326 95-170 (393)
113 1ofu_X SULA, hypothetical prot 20.0 2.8E+02 0.0097 23.6 7.2 49 246-294 47-97 (119)
No 1
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.5e-97 Score=873.78 Aligned_cols=618 Identities=53% Similarity=0.983 Sum_probs=523.8
Q ss_pred CChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcccccccccccccccccccccCCCcccccCCCccccHHHHHHhh
Q 004348 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 208 (759)
Q Consensus 129 ~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~ 208 (759)
++..|....... .++|++|++++++||++||+++++.+.|.+++++ +++++.. ......+||+++++|+++++|++
T Consensus 9 ~~~~~~~~~~~~-~~~y~~l~~~~~~~p~~~w~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~wf~~~~~n~~~~~l~~ 84 (652)
T 1pg4_A 9 IPANIADRCLIN-PEQYETKYKQSINDPDTFWGEQGKILDWITPYQK-VKNTSFA--PGNVSIKWYEDGTLNLAANCLDR 84 (652)
T ss_dssp CCHHHHHHCSSC-HHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCSC-CEEEECC--TTCCEEEESTTCEECHHHHHTGG
T ss_pred CCHHHHhhccCC-hHHHHHHHHHHhcCHHHHHHHHHhhCceecCCcc-cccCccc--cCCCCCEECCCCChhHHHHHHHH
Confidence 444455544332 4789999999999999999999877999998887 6643321 00114599999999999999999
Q ss_pred cccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecC
Q 004348 209 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF 288 (759)
Q Consensus 209 ~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpld 288 (759)
+++ ++||++|+++.+++.+..+++||+||+++++++|++|+++||++||+|+|+++|++|+++++|||+++|++++|++
T Consensus 85 ~a~-~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 85 HLQ-ENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIF 163 (652)
T ss_dssp GHH-HHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred Hhc-cCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecC
Confidence 998 7999999998754334578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccch
Q 004348 289 AGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368 (759)
Q Consensus 289 p~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 368 (759)
|.++.+++.++|+++++++||+++......+.+.++..+++++.... ...+..+++++.... ...+...++.+|
T Consensus 164 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vi~~~~~~~----~~~~~~~~~~~~ 237 (652)
T 1pg4_A 164 GGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPN--VTSVEHVIVLKRTGS----DIDWQEGRDLWW 237 (652)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTT--CCSCCEEEEECSSCC----CCCCCBTTEEEH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCC--cCCCCEEEEEeCCCC----cccccCCCceeH
Confidence 99999999999999999999999988877888888887776654320 013566777654321 111222345677
Q ss_pred hhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHH
Q 004348 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 448 (759)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~ 448 (759)
++.+.......+.....++|++||+|||||||+||||+++|++++.+........++++++|++++.+|++|++++.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~ 317 (652)
T 1pg4_A 238 RDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317 (652)
T ss_dssp HHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTT
T ss_pred HHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHH
Confidence 77765443333444567899999999999999999999999997766656666779999999999999999999987889
Q ss_pred HHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHH
Q 004348 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRW 528 (759)
Q Consensus 449 ~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~ 528 (759)
+.+|++|++++++++.+.++++..++++|++++||+++++|++++.|++.........++++||.+++|||+++++++++
T Consensus 318 ~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~ 397 (652)
T 1pg4_A 318 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEW 397 (652)
T ss_dssp HHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHH
T ss_pred HHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHH
Confidence 99999999999998766667999999999999999999999999999987544344568899999999999999999999
Q ss_pred HHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccc
Q 004348 529 FFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608 (759)
Q Consensus 529 ~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY 608 (759)
+.+.+|..+++++|.||+||+++.++...++..+.+++++|+|++|++++|+|++|+++|.|+.|||+|+||||++++||
T Consensus 398 ~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY 477 (652)
T 1pg4_A 398 YWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 477 (652)
T ss_dssp HHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEE
T ss_pred HHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhh
Confidence 99999855689999999999997666554433345778999999999999999999999999999999999999999999
Q ss_pred cCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCe
Q 004348 609 YGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 669 (759)
Q Consensus 609 ~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~ 669 (759)
|+++++|.+.||...+|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|++++++..++
T Consensus 478 ~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~ 557 (652)
T 1pg4_A 478 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557 (652)
T ss_dssp TTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEE
T ss_pred cCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCe
Confidence 99999999999877789999999998 89999999999999999999999999999998899
Q ss_pred EEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCCCCCCCCCChhh
Q 004348 670 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGV 749 (759)
Q Consensus 670 ~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~~~~~~~~~p~~ 749 (759)
.++|||+++++...++++.++|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.++++++++.++++||++
T Consensus 558 ~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~ 637 (652)
T 1pg4_A 558 AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGV 637 (652)
T ss_dssp EEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC----------CCTTH
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCCCCCCCccccCCHHH
Confidence 99999999887666667789999999999999999999999999999999999999999999987667889999999999
Q ss_pred HHHHHhhh
Q 004348 750 VDQLIALA 757 (759)
Q Consensus 750 ~~~~~~~~ 757 (759)
+++|++..
T Consensus 638 ~~~~~~~~ 645 (652)
T 1pg4_A 638 VEKLLEEK 645 (652)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998753
No 2
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.6e-97 Score=876.09 Aligned_cols=618 Identities=48% Similarity=0.853 Sum_probs=511.8
Q ss_pred CCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcc-cccccccccccccccccccC-CC-cccccCCCccccHHHH
Q 004348 128 LPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRK-GN-VKIEWFKGGITNICYN 204 (759)
Q Consensus 128 y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~-~~~~wf~~~~~n~~~~ 204 (759)
..+.||...+... +++|.++++++++||+.||++++++ +.|.++|++ +++.+.+. . ++ ...+||+++++|++++
T Consensus 10 ~~~~~~~~~~~~~-~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~wf~~~~~n~~~~ 86 (663)
T 1ry2_A 10 HSSGLVPRGSHMG-LQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDK-VFIPDPKT-GRPSFQNNAWFLNGQLNACYN 86 (663)
T ss_dssp ---------------CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCSC-SBCBCSSS-CSBCSTTCCBSTTCEECHHHH
T ss_pred ccccccccccCCC-hhhHHHHHHHHhcCHHHHHHHHHhhcCeeecCCce-eecCcccc-ccCCCCCCCcCCCCCccHHHH
Confidence 3456777776664 6789999999999999999999887 899999988 77544110 1 11 1149999999999999
Q ss_pred HHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCe
Q 004348 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (759)
Q Consensus 205 ~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav 283 (759)
+|+++++ ++||++|+++.++..+..+++||+||+++++++|+.|+ ++||++||+|+|+++|++|++++||||+++|++
T Consensus 87 ~l~~~a~-~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav 165 (663)
T 1ry2_A 87 CVDRHAL-KTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAI 165 (663)
T ss_dssp HTHHHHT-TCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCE
T ss_pred HHHHHhc-cCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 9999998 89999999997543345789999999999999999999 999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCC
Q 004348 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (759)
Q Consensus 284 ~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (759)
++|++|.++.+++.++|++++|++||+++...+.++.+.++..+++++..+ +.++++++++..... ...+...
T Consensus 166 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vi~~~~~~~~---~~~~~~~ 238 (663)
T 1ry2_A 166 HSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET----PGVRHVLVYRKTNNP---SVAFHAP 238 (663)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC----TTCCEEEEECSSCCS---SCCCCSS
T ss_pred EEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhC----CCCceEEEEecCCCC---ccccCCC
Confidence 999999999999999999999999999999888888888888887765543 456777776543210 0112233
Q ss_pred CccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhch
Q 004348 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (759)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g 443 (759)
++.+|++.+.......+.....++|++||+|||||||+||||+++|++++.+........++++++|++++.++++|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g 318 (663)
T 1ry2_A 239 RDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITG 318 (663)
T ss_dssp SEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHH
T ss_pred ccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhh
Confidence 45678777654433344455678999999999999999999999999977666666667799999999999999999999
Q ss_pred hhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCH
Q 004348 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (759)
Q Consensus 444 ~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (759)
+++.++.+|++|++++++++.+.++++..++++|++++||+++++|++++.|++.........++++||.+++|||++++
T Consensus 319 ~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~ 398 (663)
T 1ry2_A 319 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAA 398 (663)
T ss_dssp HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCH
T ss_pred hHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCH
Confidence 87889999999999999988766679999999999999999999999999998876543455689999999999999999
Q ss_pred HHHHHHHHHhCCCCccEeeeeccccccceecccCC-CCCCCCCCCcCCCCCCceEEEECC-CCcccCC-CceEEEEEecC
Q 004348 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDE-KGVEIEG-ECSGYLCIKSS 600 (759)
Q Consensus 524 ~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~-g~~GEL~I~g~ 600 (759)
++++++.+.+|..+++++|.||+||+++.++...+ +..+.+++++|+|++|++++|+|+ +|++++. |+.|||+|+||
T Consensus 399 ~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~ 478 (663)
T 1ry2_A 399 EVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAA 478 (663)
T ss_dssp HHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSC
T ss_pred HHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecC
Confidence 99999999988556899999999999876655443 233567889999999999999999 9999998 99999999999
Q ss_pred CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEe
Q 004348 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVG 661 (759)
Q Consensus 601 ~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 661 (759)
||++++|||+++++|.+.|+.+.+|||+|||+|+ +|+||+|.|||++|.+||.|.+|+|++
T Consensus 479 ~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg 558 (663)
T 1ry2_A 479 WPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVG 558 (663)
T ss_dssp CTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEEC
T ss_pred CCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEE
Confidence 9999999999999999999887789999999998 899999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCC---C-cH---HHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 662 VEHEVKGQGIYAFVTLVEGVP---Y-SE---ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 662 ~~~~~~~~~lva~Vv~~~~~~---~-~~---~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
++++..++.++|||+++++.. . ++ ++.++|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.++
T Consensus 559 ~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 559 FNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred EecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 999888999999999987643 2 22 4578999999999999999999999999999999999999999999887
Q ss_pred cCCCCCCCCCCChhhHHHHHhh
Q 004348 735 LDELGDTSTLADPGVVDQLIAL 756 (759)
Q Consensus 735 ~~~~~~~~~~~~p~~~~~~~~~ 756 (759)
.++++|.++++||+++++|++.
T Consensus 639 ~~~~~~~~~l~~p~~~~~~~~~ 660 (663)
T 1ry2_A 639 SDQLGDVSTLSNPGIVRHLIDS 660 (663)
T ss_dssp -----------CCHHHHHHHHT
T ss_pred CCCCCCcccccCHHHHHHHHHH
Confidence 6678999999999999999874
No 3
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.3e-82 Score=798.28 Aligned_cols=553 Identities=20% Similarity=0.264 Sum_probs=456.1
Q ss_pred CCCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcccccccccccccc-ccc
Q 004348 103 GAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVC-SEN 181 (759)
Q Consensus 103 ~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~-~~~ 181 (759)
..++|||++.+.. ++++...++|++++|+++++++++++|.++|++++++|+++++++.. +. ..+... ++ .++
T Consensus 382 ~~~~~dL~l~~~~---~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~-l~-~~e~~~-~~~~~~ 455 (1304)
T 2vsq_A 382 EKSNYDLNLMASP---GDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINL-VD-DREREF-LLTGLN 455 (1304)
T ss_dssp CCCCSSEEEEEEC---SSSCEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCC-CC-HHHHHH-HHTTTS
T ss_pred cccccCeEEEEec---CCcEEEEEEECCccCCHHHHHHHHHHHHHHHHHhccCccccccccCC-CC-HHHHHH-HHHhcC
Confidence 4688999887542 35688899999999999999999999999999999999999988742 11 111111 11 111
Q ss_pred ccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004348 182 LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261 (759)
Q Consensus 182 ~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Va 261 (759)
.... . ++ ..+++++|+++++ ++||++|+++. ++++||+||+++++++|++|++.|+++|++|+
T Consensus 456 ~~~~------~-~~---~~~l~~~~~~~~~-~~p~~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~ 518 (1304)
T 2vsq_A 456 PPAQ------A-HE---TKPLTYWFKEAVN-ANPDAPALTYS------GQTLSYRELDEEANRIARRLQKHGAGKGSVVA 518 (1304)
T ss_dssp CCCC------C-CC---CCCHHHHHHHHHH-HCTTSEEEESS------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred CCCC------C-CC---CCCHHHHHHHHHH-hCCCCeEEEEC------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEE
Confidence 1111 0 11 1368999999999 89999999976 68999999999999999999999999999999
Q ss_pred EEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCc
Q 004348 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341 (759)
Q Consensus 262 i~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 341 (759)
|+++|++++++++|||+|+|++||||||.+|.+|+.++++++++++||++......... + +..
T Consensus 519 i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-------------~----~~~ 581 (1304)
T 2vsq_A 519 LYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-------------L----PYT 581 (1304)
T ss_dssp ECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-------------C----CCC
T ss_pred EEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-------------c----CCC
Confidence 99999999999999999999999999999999999999999999999998764321100 0 111
Q ss_pred cEEEEeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH
Q 004348 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK 421 (759)
Q Consensus 342 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~ 421 (759)
...+.++... ... . ....+.....++++|||+|||||||+||||+++|+++ .+. .+..
T Consensus 582 ~~~~~~~~~~------------------~~~-~-~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l-~~~-~~~~ 639 (1304)
T 2vsq_A 582 GTTLFIDDQT------------------RFE-E-QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANI-QGL-VKHV 639 (1304)
T ss_dssp SEEEESSCGG------------------GGG-S-CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHH-HHH-HSSC
T ss_pred CcEEEecccc------------------ccc-c-ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHH-HHH-HHHH
Confidence 2223222110 000 0 1111223457899999999999999999999999995 444 3344
Q ss_pred HHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc
Q 004348 422 YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (759)
Q Consensus 422 ~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~ 501 (759)
..+++.++|+++++++++|+.+ .+++|.+|++|+++++.+.... .++..+++.|++++||+++++|++++.|.+....
T Consensus 640 ~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~~-~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~ 717 (1304)
T 2vsq_A 640 DYMAFSDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADEHTL-LDTERLTDLILQENVNVMFATTALFNLLTDAGED 717 (1304)
T ss_dssp CSSCCCTTCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCGGGT-TCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH
T ss_pred HhcCCCCCCEEEEECCccHHHH-HHHHHHHHHcCCEEEECChhhc-CCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh
Confidence 5678899999999999999987 6899999999999999876433 4999999999999999999999999999875432
Q ss_pred ccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC--CCCCCCCcCCCCCCceEEE
Q 004348 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--WPQKPGSATFPFFGVQPVI 579 (759)
Q Consensus 502 ~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~~iG~p~~g~~~~I 579 (759)
.+++||.+++|||+++++++++|.+.++ .++++|.||+||++++++...... ......++|+|++|++++|
T Consensus 718 -----~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i 790 (1304)
T 2vsq_A 718 -----WMKGLRCILFGGERASVPHVRKALRIMG--PGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYI 790 (1304)
T ss_dssp -----HHHTCSEEEEESSCCCHHHHHHHHHHHC--TTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEE
T ss_pred -----cCCCccEEEEecCCCCHHHHHHHHHhCC--CCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEE
Confidence 3578999999999999999999999887 478999999999998665432211 1234578999999999999
Q ss_pred ECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc----cCCcEEEeCCeee-------------------cc
Q 004348 580 VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCS-------------------SG 636 (759)
Q Consensus 580 vD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~----~~~g~y~TGDl~~-------------------~G 636 (759)
+|++++++|.|+.|||+|+| +++++||+|+|+.|.+.|.. +.++||||||+|+ +|
T Consensus 791 ~d~~~~~~p~G~~GEl~i~G--~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G 868 (1304)
T 2vsq_A 791 LNEQSQLQPFGAVGELCISG--MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRG 868 (1304)
T ss_dssp ECTTSCBCCTTCCEEEEEEE--TTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETT
T ss_pred ECCCcCCCCCCCceEEEEec--cccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECC
Confidence 99999999999999999999 99999999999999999864 2356999999998 89
Q ss_pred EeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCC
Q 004348 637 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 716 (759)
Q Consensus 637 ~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~ 716 (759)
+||+|+|||++|.+||+|.+|+|++.++..+++.++|||+.+.... .++|+++|+++||.||+|+.|+++++||+
T Consensus 869 ~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~-----~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~ 943 (1304)
T 2vsq_A 869 HRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLS-----AEDVKAHLKKQLPAYMVPQTFTFLDELPL 943 (1304)
T ss_dssp EEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSC-----HHHHHHHHHHHSCGGGSCSEEEEESCCCC
T ss_pred EeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCC-----HHHHHHHHHHhChHhhhccEEEEecccCC
Confidence 9999999999999999999999999988888899999999865332 57899999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHhc
Q 004348 717 TRSGKIMRRILRKIASR 733 (759)
Q Consensus 717 T~~GKvdR~~L~~~~~~ 733 (759)
|+||||||++|++....
T Consensus 944 t~~GKidR~~L~~~~~~ 960 (1304)
T 2vsq_A 944 TTNGKVNKRLLPKPDQD 960 (1304)
T ss_dssp CSSCSSCCSCCCCCCGG
T ss_pred CCCcccCHhhcCCcchh
Confidence 99999999999876543
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=6e-79 Score=707.86 Aligned_cols=505 Identities=27% Similarity=0.357 Sum_probs=407.8
Q ss_pred ccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHH
Q 004348 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (759)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~i 271 (759)
+|......|+++++|+++++ .+||++|+++.++. +..+++||+||+++++++|++|+++||++||+|+|+++|+++++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a~-~~pd~~Al~~~~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~ 125 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYAR-DSPEKLAMIWCDDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHHH-HCTTCEEEEEEESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH
T ss_pred CCCCcccchHHHHHHHHHHh-hCCCCEEEEEEcCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 55555667899999999999 89999999986443 44689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCc-cEEEEeccC
Q 004348 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQ 350 (759)
Q Consensus 272 va~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~vi~~~~~ 350 (759)
+++|||+|+|++++|++|.++.+++.++++++++++||++.+.. +...+.+....+ +.+ ..++.++..
T Consensus 126 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~~~ 194 (580)
T 3etc_A 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD-------VPEQVDEAHAEC----GDIPLKKAKVGGD 194 (580)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT-------HHHHHHHHHHHH----CSCCCEEEEESSS
T ss_pred HHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh-------HHHHHHHHhhhC----CCcceEEEEeCCc
Confidence 99999999999999999999999999999999999999987642 224444444444 344 444444322
Q ss_pred ccccccccccCCCCccchhhhcCCCCCCC--C--ccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCC
Q 004348 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKC--E--VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY 426 (759)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l 426 (759)
. ......+.+.+....... + .....++|++||+|||||||.||||+++|.+++ .........+++
T Consensus 195 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~-~~~~~~~~~~~~ 263 (580)
T 3etc_A 195 V----------LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPL-GHILTAKYWQNV 263 (580)
T ss_dssp C----------CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHH-HHHHHHHTTSCC
T ss_pred c----------ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHH-HHHHHHHHhhCC
Confidence 1 011233433333222211 1 124678999999999999999999999999844 444444555788
Q ss_pred CCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccC
Q 004348 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506 (759)
Q Consensus 427 ~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~ 506 (759)
.+++++++.++++|+.+....++.+++.|+++++.+.. .+++..+++.|+++++|+++++|++++.|++.. ....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~ 338 (580)
T 3etc_A 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYD--RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---LSHY 338 (580)
T ss_dssp CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC---C---
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCC--CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc---cccC
Confidence 99999999999999988655688999999999998632 359999999999999999999999999998863 3455
Q ss_pred CCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcc
Q 004348 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 586 (759)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~ 586 (759)
++++||.+++|||+++++++++|.+.+| ++++|.||+||++..++.... ...+++++|+|++|++++|+|++|++
T Consensus 339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~v~ivd~~g~~ 413 (580)
T 3etc_A 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETVVTIATFPW--MEPKPGSIGKPTPGYKIELMDRDGRL 413 (580)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHS---CCCEEEECCTTSSCCEECCTT--SCCCTTCCBEECTTCEEEEECTTSCB
T ss_pred CCccceEEEEccCCCCHHHHHHHHHHhC---CeEecccccccccceeecCCC--CCCCCCccccCCCCCEEEEECCCCCC
Confidence 7899999999999999999999999987 789999999999876543322 13567899999999999999999999
Q ss_pred cCCCceEEEEEecC---CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHH
Q 004348 587 IEGECSGYLCIKSS---WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEV 644 (759)
Q Consensus 587 vp~g~~GEL~I~g~---~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eI 644 (759)
+|.|+.|||+|+|+ .+++++|||++|+.+.+.|. +|||+|||+|+ +|+||+|.||
T Consensus 414 ~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~---~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eI 490 (580)
T 3etc_A 414 CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH---DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEV 490 (580)
T ss_dssp CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHH
T ss_pred CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC---CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 99999999999962 26899999999999999873 78999999998 8999999999
Q ss_pred HHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccH
Q 004348 645 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 724 (759)
Q Consensus 645 E~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR 724 (759)
|++|.+||+|.+|+|++++++..++.++|+|+++++...++++.++|+++|+++||+||+|+.|+++++||+|+||||+|
T Consensus 491 E~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R 570 (580)
T 3etc_A 491 ESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRR 570 (580)
T ss_dssp HHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC-----------
T ss_pred HHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcH
Confidence 99999999999999999999999999999999998877677778999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 004348 725 RILRKIASR 733 (759)
Q Consensus 725 ~~L~~~~~~ 733 (759)
++|++++.+
T Consensus 571 ~~Lr~~~~~ 579 (580)
T 3etc_A 571 VEIRDKDQS 579 (580)
T ss_dssp ---------
T ss_pred HHHHhHhhc
Confidence 999988653
No 5
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.7e-77 Score=686.63 Aligned_cols=486 Identities=23% Similarity=0.343 Sum_probs=411.2
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|.++++ ++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 23 ~l~~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~ 97 (536)
T 3ni2_A 23 PLHSYVLENLS-NHSSKPCLINGA----NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHR 97 (536)
T ss_dssp CHHHHHTTTGG-GSTTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhh-cCCCceEEEECC----CCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 58899999999 899999999752 2578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|+++... +.+.+..... .+ .++.++...
T Consensus 98 Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~---------~~~~~~~~~~-----~~-~~~~~~~~~--------- 153 (536)
T 3ni2_A 98 GAIITAANPFSTPAELAKHAKASRAKLLITQACYY---------EKVKDFARES-----DV-KVMCVDSAP--------- 153 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT---------HHHHHHHHHH-----TC-EEEESSCCC---------
T ss_pred CCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH---------HHHHHHHhhc-----Cc-eEEEecCCC---------
Confidence 99999999999999999999999999999987642 2233332222 22 234333211
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH---HHhCCCCCcEEEEecC
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTAD 437 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~l~~~d~~l~~~~ 437 (759)
.....|.+.........+.....++|++||+|||||||.||||+++|++++.+...... ..+++.++|++++.+|
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 231 (536)
T 3ni2_A 154 --DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLP 231 (536)
T ss_dssp --TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSC
T ss_pred --CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecC
Confidence 11233444443333333344567899999999999999999999999996544333221 1356788999999999
Q ss_pred cchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEe
Q 004348 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (759)
Q Consensus 438 l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (759)
++|+.++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|
T Consensus 232 ~~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~g 305 (536)
T 3ni2_A 232 MFHIYALNSIMLCGLRVGAPILIMPK----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--LDKHDLSSLRMIKSG 305 (536)
T ss_dssp TTSHHHHHHTHHHHHHHTCCEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC--GGGSCCTTCCEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEcCC----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc--cccCCCccceEEEEC
Confidence 99999877778899999999999864 489999999999999999999999999998764 345678999999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccC---CCCCCCCCCCcCCCCCCceEEEEC-CCCcccCCCceE
Q 004348 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL---PGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSG 593 (759)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~---~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~g~~G 593 (759)
||++++++.++|.+.++ +++++|.||+||++.+++... ......+++++|+|++|++++|+| ++++++|.|+.|
T Consensus 306 Ge~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 383 (536)
T 3ni2_A 306 GAPLGKELEDTVRAKFP--QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPG 383 (536)
T ss_dssp SSCCCHHHHHHHHHHCT--TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCE
T ss_pred CCCCCHHHHHHHHHHCC--CCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCcc
Confidence 99999999999999985 489999999999997654321 112234678999999999999999 579999999999
Q ss_pred EEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCcc
Q 004348 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQC 654 (759)
Q Consensus 594 EL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V 654 (759)
||+|+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|
T Consensus 384 El~v~g--~~v~~GY~~~p~~t~~~~~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V 459 (536)
T 3ni2_A 384 EICIRG--DQIMKGYLNDPEATSRTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEI 459 (536)
T ss_dssp EEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTE
T ss_pred EEEEeC--cccchhhcCChhHHHhhccC--CCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCc
Confidence 999999 99999999999999988743 78999999998 89999999999999999999
Q ss_pred ceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 655 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 655 ~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
.+|+|++++++..++.++|||+..++...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++.+.
T Consensus 460 ~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 460 SDAAVVGLKDEDAGEVPVAFVVKSEKSQAT---EDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred ceEEEEeeecCCCCceeEEEEEecCCCCCC---HHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhc
Confidence 999999999998999999999998776554 578999999999999999999999999999999999999998765
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.8e-77 Score=688.80 Aligned_cols=491 Identities=20% Similarity=0.282 Sum_probs=409.4
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 26 tl~~~l~~~a~-~~p~~~A~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 98 (539)
T 1mdb_A 26 TFGDLLRDRAA-KYGDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (539)
T ss_dssp CHHHHHHHHHH-HHTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HCCCCEEEEeC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 58899999998 89999999976 688999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|+++.... ......+......+ +.++.+++.+...
T Consensus 99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 161 (539)
T 1mdb_A 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG----FDYRSLARQVQSKL----PTLKNIIVAGEAE--------- 161 (539)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT----EEHHHHHHHHHHHC----TTCCCEEEESCCT---------
T ss_pred CeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc----ccHHHHHHHHHhcC----CCccEEEEcCCcc---------
Confidence 999999999999999999999999999999875321 11122232322222 4455454433211
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
.|.+.........+.....++|++||+|||||||+||||+++|++++ +........++++++|++++.+|++|
T Consensus 162 ------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~h 234 (539)
T 1mdb_A 162 ------EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYI-YSLKRSVEVCWLDHSTVYLAALPMAH 234 (539)
T ss_dssp ------TSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHH-HHHHHHHHHHTCCTTCEEEECSCTTS
T ss_pred ------chhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHH-HHHHHHHHhhCCCCCCEEEEeecccc
Confidence 01111111111112234568999999999999999999999999954 44555666789999999999999999
Q ss_pred hchhhH-HHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 441 ~~g~~~-~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
++++.. .++.+|+.|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|||
T Consensus 235 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 235 NYPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH--HCCCCCTTCCEEEEESS
T ss_pred cchhhHHHHHHHHHhCCEEEECCC----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcc--ccCCCccceeEEEEcCC
Confidence 988654 68999999999999754 489999999999999999999999999987642 23457899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCc-eEEEECCCCcccCCCceEEEEEe
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV-QPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~-~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
++++++.++|.+.+| ++++|.||+||++...+. .........+++|+|+++. +++|+|++++++|.|+.|||+|+
T Consensus 309 ~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~ 384 (539)
T 1mdb_A 309 KFSAEAARRVKAVFG---CTLQQVFGMAEGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTR 384 (539)
T ss_dssp CCCHHHHTTHHHHTC---SEEEEEEECTTSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHhC---CcEEEEEcCCCCcccccC-CCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEee
Confidence 999999999999987 789999999997643332 1111112346899999765 79999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|
T Consensus 385 g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 460 (539)
T 1mdb_A 385 G--PYTIRGYYKAEEHNAASFTE--DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAM 460 (539)
T ss_dssp C--TTSCSSCTTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEE
T ss_pred C--cccchhhcCChhhhhhhccC--CCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9 89999999999999998864 78999999998 8999999999999999999999999
Q ss_pred EeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhh-cCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCC
Q 004348 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDEL 738 (759)
Q Consensus 660 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~ 738 (759)
++.+++..++.++|||++++.. .+ .++|+++|+++ ||.||+|+.|+++++||+|+||||||++|++.+.++++++
T Consensus 461 v~~~~~~~g~~~~a~vv~~~~~-~~---~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~~ 536 (539)
T 1mdb_A 461 VSMPDQFLGERSCVFIIPRDEA-PK---AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG 536 (539)
T ss_dssp EEEEETTTEEEEEEEEEESSSC-CC---HHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHTC
T ss_pred EeccccccCceEEEEEEECCCC-CC---HHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhcc
Confidence 9999998899999999987432 23 57899999998 9999999999999999999999999999999998877766
Q ss_pred CC
Q 004348 739 GD 740 (759)
Q Consensus 739 ~~ 740 (759)
++
T Consensus 537 y~ 538 (539)
T 1mdb_A 537 FK 538 (539)
T ss_dssp --
T ss_pred cc
Confidence 53
No 7
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=4.7e-76 Score=682.43 Aligned_cols=501 Identities=25% Similarity=0.343 Sum_probs=420.1
Q ss_pred ccCCCccccHHHHHHhhccccc-----CCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcC
Q 004348 192 EWFKGGITNICYNCLDRNIEAG-----LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLP 265 (759)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~-----~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~ 265 (759)
.|+.....|+++++|+++++ . +||++|+++.+.. +..+++||+||+++++++|++|+++ |+++||+|+|+++
T Consensus 30 ~~~~~~~~~~~~~~l~~~a~-~~~a~~~p~~~al~~~~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~ 107 (570)
T 3c5e_A 30 HQEVPAKFNFASDVLDHWAD-MEKAGKRPPSPALWWVNGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLP 107 (570)
T ss_dssp BCCCCSBCCHHHHTHHHHHH-HHHTTSSCCCEEEEEECSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECC
T ss_pred cccCCccccHHHHHHHHHHh-hccccCCCCceEEEEEcCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcC
Confidence 67777778899999999988 7 9999999986321 2357899999999999999999998 9999999999999
Q ss_pred CChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEE
Q 004348 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL 345 (759)
Q Consensus 266 ~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi 345 (759)
|++++++++|||+++|++++|++|.++.+++.++++++++++||+++... ..+......+ +.++.++
T Consensus 108 n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~ 174 (570)
T 3c5e_A 108 RVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI---------QEVDTVASEC----PSLRIKL 174 (570)
T ss_dssp SCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH---------HHHHHHGGGC----TTCCEEE
T ss_pred CCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH---------HHHHHHhhcC----CceeEEE
Confidence 99999999999999999999999999999999999999999999987642 2222222222 3455555
Q ss_pred EeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHH-HHHHHHHHh
Q 004348 346 TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH-TATTFKYAF 424 (759)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~-~~~~~~~~~ 424 (759)
.++.... .....|.+.+.......+.....+++++||+|||||||.||||+++|+ .+.+ ..... ..+
T Consensus 175 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~ 242 (570)
T 3c5e_A 175 LVSEKSC----------DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT 242 (570)
T ss_dssp EESSSCC----------TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT
T ss_pred EecccCc----------cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc
Confidence 5543110 011234443332222222234568999999999999999999999999 4542 33333 567
Q ss_pred CCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccc
Q 004348 425 DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504 (759)
Q Consensus 425 ~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~ 504 (759)
++.++|++++.+|++|+.++...++.+|..|+++++.+.. .+++..+++.|+++++|+++++|++++.|++.. ..
T Consensus 243 ~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~ 317 (570)
T 3c5e_A 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP--KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---LS 317 (570)
T ss_dssp SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCS--SCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---TT
T ss_pred CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCC--CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---cc
Confidence 8999999999999999998766789999999999998642 359999999999999999999999999998763 23
Q ss_pred cCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCC
Q 004348 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 584 (759)
Q Consensus 505 ~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g 584 (759)
..++++||.+++|||+++++++++|.+.++ ++++|.||+||++..++.... ...+.+++|+|+++++++|+|+++
T Consensus 318 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d~~g 392 (570)
T 3c5e_A 318 SYKFPHLQNCVTVGESLLPETLENWRAQTG---LDIRESYGQTETGLTCMVSKT--MKIKPGYMGTAASCYDVQIIDDKG 392 (570)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTT--SCCCTTCCCEECTTCCEEEECTTS
T ss_pred ccccccceEEEEcCCcCCHHHHHHHHHHhC---CchhhccchhhcccceecCcc--cccCCCcccccCCCceEEEECCCC
Confidence 446899999999999999999999999887 789999999999865543221 134678999999999999999999
Q ss_pred cccCCCceEEEEEe-----cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeC
Q 004348 585 VEIEGECSGYLCIK-----SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIG 640 (759)
Q Consensus 585 ~~vp~g~~GEL~I~-----g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~ 640 (759)
+++|.|+.|||+|+ | |++++|||++|+.+.+.|. +|||+|||+|+ +|+||+
T Consensus 393 ~~~~~G~~GEl~v~~~~~~g--~~v~~GY~~~~~~t~~~f~---~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~ 467 (570)
T 3c5e_A 393 NVLPPGTEGDIGIRVKPIRP--IGIFSGYVDNPDKTAANIR---GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIG 467 (570)
T ss_dssp CBCCTTCCEEEEEECSSBCC--TTCCCEETTCHHHHHHTEE---TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEEC
T ss_pred CCCCCCCCCeeEEeccCCCC--chhhccccCChhHhhhhhc---CCccccceeEEEcCCceEEEEecCCCEEEECCEEEC
Confidence 99999999999999 8 8999999999999998873 68999999998 899999
Q ss_pred HHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCC--CCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCC
Q 004348 641 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV--PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 718 (759)
Q Consensus 641 ~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~--~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~ 718 (759)
|.|||++|.+||+|.+|+|++.+++..++.++|||+++++. ...+.+.++|+++|+++||.||+|+.|+++++||+|+
T Consensus 468 p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 547 (570)
T 3c5e_A 468 PSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTV 547 (570)
T ss_dssp HHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCT
T ss_pred HHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCC
Confidence 99999999999999999999999988899999999987654 2234567899999999999999999999999999999
Q ss_pred CCcccHHHHHHHHhcc
Q 004348 719 SGKIMRRILRKIASRQ 734 (759)
Q Consensus 719 ~GKvdR~~L~~~~~~~ 734 (759)
+|||+|++|++.+...
T Consensus 548 ~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 548 TGKIQRAKLRDKEWKM 563 (570)
T ss_dssp TCCBCHHHHHHHHTC-
T ss_pred CcCCcHHHHHHHHHhh
Confidence 9999999999987643
No 8
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.7e-77 Score=692.29 Aligned_cols=493 Identities=20% Similarity=0.288 Sum_probs=380.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCC--CCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~--~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ 278 (759)
++.++|+++++ ++||++|+++.+.. .+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 20 ~l~~~l~~~a~-~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 98 (549)
T 3g7s_A 20 SLADRIDAAAE-KFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALW 98 (549)
T ss_dssp CTTHHHHHHHH-HHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 57899999998 89999999988421 1223899999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccc
Q 004348 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (759)
Q Consensus 279 kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (759)
++|++++||+|.++.+++.++++++++++||+++... ..+...... ..+..+++.+..
T Consensus 99 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 99 RVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY---------ENFKPVLEK-----TGVERVFVVGGE-------- 156 (549)
T ss_dssp HTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH---------HHHHHHHTT-----SCCCEEEEETCS--------
T ss_pred HhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH---------HHHHHHHhh-----CCCcEEEEeCCC--------
Confidence 9999999999999999999999999999999987642 222222221 234555544321
Q ss_pred ccCCCCccchhhhcCCCCCCCCccccCC-CCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecC
Q 004348 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (759)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~ 437 (759)
...+.+.........+.....+ +|+|||+|||||||+||||+++|++++ +........+++.++|++++.+|
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLA-ANALQLAVATGLSHMDTIVGCMP 229 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHH-HHHHHHHHHHCCCTTCEEECCSC
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHH-HHHHHHHHHcCCCCCCEEEEeCc
Confidence 1223333332222222223334 899999999999999999999999954 44555667789999999999999
Q ss_pred cchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEe
Q 004348 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (759)
Q Consensus 438 l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (759)
++|+.++.. ++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|++.........++++||.+++|
T Consensus 230 ~~~~~~~~~-~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 304 (549)
T 3g7s_A 230 MFHSAEFGL-VNLMVTVGNEYVVMGM----FNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATG 304 (549)
T ss_dssp TTSHHHHHH-HTTHHHHCCEEEEESS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEE
T ss_pred HHHHHHHHH-HHHHHhcCceEEEcCC----CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeC
Confidence 999988654 7889999999999863 49999999999999999999999999998764322223578999999999
Q ss_pred CCCCCHHHHHHHHHH----hCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccCCCce
Q 004348 518 GEPINPSAWRWFFNV----VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECS 592 (759)
Q Consensus 518 Ge~l~~~~~~~~~~~----~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~g~~ 592 (759)
||++++++.+++.+. ++.++++++|.||+||++.+++...... ..+.+++|+|++|++++|+| ++++++|.|+.
T Consensus 305 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~ 383 (549)
T 3g7s_A 305 AWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGES 383 (549)
T ss_dssp SSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCC
T ss_pred CccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCc
Confidence 999999999999987 6655689999999999998766443222 24567899999999999999 79999999999
Q ss_pred EEEEEecCCCcccccccCChhhHHhhhcccCCc--EEEeCCeee-------------------ccEeeCHHHHHHHHhcC
Q 004348 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCS-------------------SGHRIGTAEVESALVSH 651 (759)
Q Consensus 593 GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g--~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~ 651 (759)
|||+|+| |++++|||++|+.+.+.|+.+.+| ||+|||+|+ +|+||+|.|||++|.+|
T Consensus 384 GEl~v~g--~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (549)
T 3g7s_A 384 GEIVIRG--PNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKH 461 (549)
T ss_dssp EEEEEES--TTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTS
T ss_pred eEEEEEC--cchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence 9999999 999999999999999998644466 999999998 89999999999999999
Q ss_pred CccceEEEEeEecCCCCeEEEEEEEEcCC--CCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 652 PQCAEAAVVGVEHEVKGQGIYAFVTLVEG--VPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 652 p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~--~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
|+|.+|+|++++++..++.++|||+++++ ...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++
T Consensus 462 p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~ 538 (549)
T 3g7s_A 462 EAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD---EEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLRE 538 (549)
T ss_dssp TTEEEEEEECCCC------CEEEEEECSTTTTSCC---HHHHHHHHHTTCC-----CCCCEEEECC--------------
T ss_pred CCeeeEEEEeeEccccCceEEEEEEECCCccCcCC---HHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHH
Confidence 99999999999998889999999999876 2333 678999999999999999999999999999999999999999
Q ss_pred HHhcc
Q 004348 730 IASRQ 734 (759)
Q Consensus 730 ~~~~~ 734 (759)
.+..+
T Consensus 539 ~~~~~ 543 (549)
T 3g7s_A 539 KEAEG 543 (549)
T ss_dssp -----
T ss_pred Hhhcc
Confidence 87654
No 9
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.2e-76 Score=679.91 Aligned_cols=480 Identities=21% Similarity=0.281 Sum_probs=400.0
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+++. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 17 ~l~~~l~~~a~-~~p~~~A~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 91 (517)
T 3r44_A 17 NIGWMLRQRAT-VSPRLQAYVEP----STDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKL 91 (517)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEEG----GGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCCeEEEeC----CcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence 68899999999 89999999986 22459999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|++.... ..+....... .....++.+..
T Consensus 92 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~----------- 147 (517)
T 3r44_A 92 GAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA---------PVIDAIRAQA----DPPGTVTDWIG----------- 147 (517)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHHHSS----SCCTTCCEEEE-----------
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEECCchH---------HHHHHHHhcc----CCccEEEEccC-----------
Confidence 99999999999999999999999999999976532 2222222211 11111111110
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
...+.+.+.......+.....++|++||+|||||||.||||+++|+++ .+........++++++|++++.+|++|
T Consensus 148 ----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~~ 222 (517)
T 3r44_A 148 ----ADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESV-HSAASSWASTIDVRYRDRLLLPLPMFH 222 (517)
T ss_dssp ----HHHHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHH-HHHHHHHHHHSCCCTTCEEEECSCTTS
T ss_pred ----cccHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHH-HHHHHHHHHhcCCCCCCEEEEeCchHH
Confidence 011222222222233344567899999999999999999999999995 455556667789999999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
+.++...+ .+++.|+++++.+. +++..+++.|+++++|++.++|++++.|.+... ....++++||.+++|||+
T Consensus 223 ~~~~~~~~-~~~~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 223 VAALTTVI-FSAMRGVTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYFITGGAP 295 (517)
T ss_dssp HHHHHHHH-HHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH--HHHCCCTTCCEEEECSSC
T ss_pred HHHHHHHH-HHHhcCeEEEEeCC----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc--cccCCCCcccEEEECCCC
Confidence 99864434 45559999999854 499999999999999999999999999987643 334578999999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecC
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~ 600 (759)
+++++.++|.+. + ++++|.||+||+++..+.........+.+++|+|+++++++|+|+++++++.| .|||+|+|
T Consensus 296 l~~~~~~~~~~~-~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g- 369 (517)
T 3r44_A 296 MPEALIKIYAAK-N---IEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKS- 369 (517)
T ss_dssp CCHHHHHHHHHT-T---CEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEE-
T ss_pred CCHHHHHHHHhc-C---CcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeC-
Confidence 999999999886 4 89999999999987655433332245678999999999999999999999999 89999999
Q ss_pred CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEe
Q 004348 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVG 661 (759)
Q Consensus 601 ~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 661 (759)
|++++|||++|+.+.+.| .+|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|++
T Consensus 370 -~~v~~GY~~~p~~t~~~f---~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~ 445 (517)
T 3r44_A 370 -DILLKEYWNRPEATRDAF---DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIG 445 (517)
T ss_dssp -TTSCSEETTCHHHHHHTE---ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred -cchhhhhCCChhhhHhhh---cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEe
Confidence 899999999999999887 378999999998 899999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhccc
Q 004348 662 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735 (759)
Q Consensus 662 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~ 735 (759)
++++..++.++++| ..++...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++.+.+.+
T Consensus 446 ~~~~~~g~~~~a~v-~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 446 LPDEKWGEIAAAIV-VADQNEVS---EQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp EEETTTEEEEEEEE-EECTTTCC---HHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred ccccccCceEEEEE-ECCCCCCC---HHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 99998889899988 44443333 578999999999999999999999999999999999999999998654
No 10
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2.5e-76 Score=675.14 Aligned_cols=477 Identities=22% Similarity=0.335 Sum_probs=401.3
Q ss_pred HHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCe
Q 004348 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (759)
Q Consensus 204 ~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav 283 (759)
++|+++++ ++||++|+...... ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 4 ~l~~~~a~-~~p~~~a~~~~~~~---~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 79 (503)
T 4fuq_A 4 NLFARLFD-KLDDPHKLAIETAA---GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79 (503)
T ss_dssp CHHHHHHS-CCSCTTSEEEEETT---CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHH-hCCCCceEEEecCC---CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 56777887 89999888865322 678999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCC
Q 004348 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (759)
Q Consensus 284 ~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (759)
++|++|.++.+++.++++++++++||+++..... +....... . . .++.+....
T Consensus 80 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~---------~~~~~~~~----~-~-~~~~~~~~~------------ 132 (503)
T 4fuq_A 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDG---------IAAIAAKV----G-A-TVETLGPDG------------ 132 (503)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTT---------THHHHHHH----T-C-EEEECCTTS------------
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEECchhhHH---------HHHHHhhc----C-c-eEEEecCCc------------
Confidence 9999999999999999999999999998764321 11122222 1 1 233322111
Q ss_pred CccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhch
Q 004348 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (759)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g 443 (759)
...+.+.........+.....++|++||+|||||||.||||+++|+++ .+........++++++|++++.+|++|..+
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 210 (503)
T 4fuq_A 133 -RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNL-ASNSLTLVDYWRFTPDDVLIHALPIYHTHG 210 (503)
T ss_dssp -CSHHHHHHHTSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHH-HHHHHHHHHHTTCCTTCEEEECSCSSSHCC
T ss_pred -ccccchhhhcCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHH-HHHHHHHHHHhCCCCCCEEEEeCChHHHHH
Confidence 011111111112222233567899999999999999999999999995 455566667789999999999999999998
Q ss_pred hhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCH
Q 004348 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (759)
Q Consensus 444 ~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (759)
+...++.+++.|+++++.+. ++++.+++.++ ++|++.++|+++..|++... ....++++||.+++|||++++
T Consensus 211 ~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gg~~l~~ 282 (503)
T 4fuq_A 211 LFVASNVTLFARGSMIFLPK----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--LTKETTGHMRLFISGSAPLLA 282 (503)
T ss_dssp CCCCHHHHHHTTCEEEECSS----CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--CSTTTTTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHhCCEEEEcCC----CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--ccccchhhcEEEEECCCCCCH
Confidence 76677889999999999864 49999999998 89999999999999998754 234567899999999999999
Q ss_pred HHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccCCCceEEEEEecCCC
Q 004348 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWP 602 (759)
Q Consensus 524 ~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~g~~GEL~I~g~~~ 602 (759)
++.++|.+.+| ++++|.||+||++..++... .....++++|+|++|++++|+| ++++++|.|+.|||+|+| |
T Consensus 283 ~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g--~ 355 (503)
T 4fuq_A 283 DTHREWSAKTG---HAVLERYGMTETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKG--P 355 (503)
T ss_dssp HHHHHHHHHHS---CCEEECCEETTTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEES--T
T ss_pred HHHHHHHHHhC---CCccceEcccccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEEC--C
Confidence 99999999987 78999999999987644322 2234668899999999999999 789999999999999999 9
Q ss_pred cccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEe
Q 004348 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVE 663 (759)
Q Consensus 603 ~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~ 663 (759)
++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|++++
T Consensus 356 ~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 433 (503)
T 4fuq_A 356 NVFKGYWRMPEKTKSEFRD--DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVP 433 (503)
T ss_dssp TSCCCBTTCHHHHHHTBCT--TSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred chhhhhcCChhhhHhhhCC--CCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeE
Confidence 9999999999999998854 78999999998 89999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 664 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 664 ~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
++..++.++++|+.+++...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++.+.+
T Consensus 434 ~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 434 HADFGEGVTAVVVRDKGATID---EAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp ETTTEEEEEEEEEECTTCCCC---HHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred chhcCceeEEEEEeCCCCCCC---HHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHH
Confidence 998899999999998876655 5789999999999999999999999999999999999999998864
No 11
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=8.3e-77 Score=694.08 Aligned_cols=462 Identities=17% Similarity=0.199 Sum_probs=381.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|+
T Consensus 28 tl~~~~~~~a~-~~Pd~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailka 100 (620)
T 4dg8_A 28 TVVARFSEMAA-LHPHREAIRDR------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLS 100 (620)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-hCCCCeEEEcC------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 68999999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++|+|+||.+|.+++.++++++++++||+++...... .... .+.+..
T Consensus 101 Ga~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------------------~~~~-~~~~~~----------- 148 (620)
T 4dg8_A 101 GHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------------------NGLP-CVPVRH----------- 148 (620)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------------------TTSC-EEEGGG-----------
T ss_pred CCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------------------cCCc-eeeecc-----------
Confidence 99999999999999999999999999999765432110 0011 011100
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
..............++|+|||+|||||||+||||+++|+++ .+.... ...+++.++|++++.+|++|
T Consensus 149 -----------~~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l-~~~~~~-~~~~~~~~~d~~l~~~p~~~ 215 (620)
T 4dg8_A 149 -----------LPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGI-TRLCLG-QSFLAFAPQMRFLVNSPLSF 215 (620)
T ss_dssp -----------CCCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHH-HHHHSS-CGGGTTCTTCEEEECSCTTS
T ss_pred -----------CCcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHH-HHHHHH-HHhhCCCCCCEEEEECccCH
Confidence 00011111222356899999999999999999999999995 443333 44578999999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
+.+ .+++|.+|++|+++++.+. ..+++..++++|+++++|+++++|++++.|++... .++++||.+++|||+
T Consensus 216 ~~~-~~~~~~~l~~G~~~v~~~~--~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 216 DAA-TLEIWGALLNGGCCVLNDL--GPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-----DCLGGLRQLLTGGDI 287 (620)
T ss_dssp THH-HHHHHHHHTTTCEEEECCS--SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSC
T ss_pred HHH-HHHHHHHHhcCCEEEeCcc--ccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-----hhCCCccEEEEEeCc
Confidence 998 5789999999999999743 23599999999999999999999999999987543 257899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCC--CCCCCCCCCcCCCCCCceEEEECCCCcc-cCCCceEEEEE
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GAWPQKPGSATFPFFGVQPVIVDEKGVE-IEGECSGYLCI 597 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~~iG~p~~g~~~~IvD~~g~~-vp~g~~GEL~I 597 (759)
+++++.+++.+.++ +++++|.||+||++++++.... ........++|+|++|++++|+|+++++ +|.|+.|||+|
T Consensus 288 l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i 365 (620)
T 4dg8_A 288 LSVPHVRRALLRHP--RLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVA 365 (620)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEE
T ss_pred CCHHHHHHHHHhCC--CeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEE
Confidence 99999999988875 5899999999999976553321 1123456789999999999999999988 78999999999
Q ss_pred ecCCCcccccccCChhhHHhhhcccC---C--cEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCc
Q 004348 598 KSSWPGAFRTLYGDHERYETTYFKPF---P--GYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQ 653 (759)
Q Consensus 598 ~g~~~~v~~GY~~~~e~~~~~~~~~~---~--g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~ 653 (759)
+| |++++||||+|+.|.+.|.... . +||+|||+|+ +|+||+|.|||++|.+||+
T Consensus 366 ~G--~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~ 443 (620)
T 4dg8_A 366 FG--AGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPG 443 (620)
T ss_dssp EE--TTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTT
T ss_pred ec--cccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCC
Confidence 99 9999999999999999986421 1 6999999998 9999999999999999999
Q ss_pred cceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 654 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 654 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
|.+|+|++.+++. ...++++++.... .++++|+++||.||+|+.|+++++||+|+||||||++|++.+..
T Consensus 444 V~~a~Vv~~~~~~-~~~lv~~~~~~~~---------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 444 ILDCALLVRERNG-VKQLLCAWTGKAD---------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEECTT---------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred ccEEEEEEEeCCC-ceEEEEEEecChH---------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 9999999998874 4455555554322 23445778899999999999999999999999999999998765
Q ss_pred ccC
Q 004348 734 QLD 736 (759)
Q Consensus 734 ~~~ 736 (759)
...
T Consensus 514 ~~~ 516 (620)
T 4dg8_A 514 PLE 516 (620)
T ss_dssp CC-
T ss_pred ccc
Confidence 543
No 12
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.1e-75 Score=686.11 Aligned_cols=487 Identities=21% Similarity=0.297 Sum_probs=405.3
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ ||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|+
T Consensus 28 ~l~~~~~~~a~---pd~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~a 98 (617)
T 3rg2_A 28 PLTDILTRHAA---SDSIAVIDG------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98 (617)
T ss_dssp CTTHHHHTTTT---CCSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhC---CCCeEEecC------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhc
Confidence 57899998863 999999976 789999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.+|.+++.+++++++++++|++...... ............. +.+..+.......
T Consensus 99 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 161 (617)
T 3rg2_A 99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALF----SGDDFLNTFVTEH----SSIRVVQLLNDSG--------- 161 (617)
T ss_dssp TCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGG----SSSHHHHHHHHHS----TTCCEEEEETCCS---------
T ss_pred CeEEccCCccccHHHHHHHHhhcCceEEEeccccccc----ccHHHHHHHhhcC----Cccceeeeccccc---------
Confidence 9999999999999999999999999999998764310 0112222222222 3444444443221
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
...+.+...............++++|||+|||||||+||||+++|+++ .+........+++.++|++++.+|++|
T Consensus 162 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~-~~~~~~~~~~~~~~~~~~~l~~~p~~~ 236 (617)
T 3rg2_A 162 ----EHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDY-YYSVRRSVEICQFTQQTRYLCAIPAAH 236 (617)
T ss_dssp ----TTBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHH-HHHHHHHHHHHTCCTTCEEEECSCTTS
T ss_pred ----ccchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHH-HHHHHHHHHhcCCCCcceEEEeccchh
Confidence 111222222222222333456899999999999999999999999995 455666677789999999999999888
Q ss_pred hchhhH-HHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 441 ~~g~~~-~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
.+++.. +++.+|+.|+++++.+. +++..+++.|+++++|++.++|+++..|++.........++++||.+++|||
T Consensus 237 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 237 NYAMSSPGSLGVFLAGGTVVLAAD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp HHHHHSSHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred hhhhhHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 776543 68999999999999764 4889999999999999999999999999875432223346899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCC-CCceEEEECCCCcccCCCceEEEEEe
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~-~g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
++++++.++|.+.++ ++++|.||+||++...+.... .......++|+|+ ++++++|+|++++++|.|+.|||+|+
T Consensus 313 ~l~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~ 388 (617)
T 3rg2_A 313 RLSATLAARIPAEIG---CQLQQVFGMAEGLVNYTRLDD-SAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTR 388 (617)
T ss_dssp CCCHHHHHHHHHHTC---SEEEEEEEETTEEEEECCTTS-CHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred cCCHHHHHHHHHHhC---CcEEEEeccCcceeecccCCC-cccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEec
Confidence 999999999999986 899999999999865442211 1112335789998 78899999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| |++++||||+|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|
T Consensus 389 G--~~v~~GY~~~p~~t~~~f~~--~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~v 464 (617)
T 3rg2_A 389 G--PYTFRGYYKSPQHNASAFDA--NGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAAL 464 (617)
T ss_dssp C--SSSCSCCTTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEE
T ss_pred C--ccccchhcCChhhhhhccCC--CCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence 9 99999999999999999854 78999999998 8999999999999999999999999
Q ss_pred EeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHh-hcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhccc
Q 004348 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735 (759)
Q Consensus 660 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~ 735 (759)
++.+++..++.++|||+..+... .+++++++++ .||.||+|+.|+++++||+|+||||||++|++++....
T Consensus 465 v~~~~~~~~~~~~a~vv~~~~~~-----~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 465 VSMEDELMGEKSCAYLVVKEPLR-----AVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp EEEEETTTEEEEEEEEEESSCCC-----HHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred EeccCcccCeeEEEEEEeCCCCC-----HHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 99999888999999999987433 5678999998 69999999999999999999999999999999886543
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=5e-75 Score=664.77 Aligned_cols=468 Identities=22% Similarity=0.237 Sum_probs=393.0
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ ++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 3 tl~~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 3 TVNEMLRRAAT-RAPDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEETT----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-hCCCceEEEEcC----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 57889999998 899999999752 2578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEE--eCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVIT--SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (759)
|++++|++|.++.+++.+++++++++++|+ ++... .. ..... ..++ ++.+++
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~---~~~~~----~~~~-~~~~~~--------- 131 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA---------DA---IFQSG----SGAR-IIFLGD--------- 131 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHH---------HH---HHHHC----CCCE-EEEGGG---------
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhh---------hh---hhhcc----ccce-eEEecc---------
Confidence 999999999999999999999999999998 54321 11 10111 1222 222211
Q ss_pred ccCCCCccchhhhcCCC-----CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCC--CCCcE
Q 004348 359 KWQDGRDIWWQDVVPKY-----PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY--KPSDV 431 (759)
Q Consensus 359 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l--~~~d~ 431 (759)
..... ....+.....+++++||+|||||||+||||+++|++++ +........+++ .++|+
T Consensus 132 ------------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~-~~~~~~~~~~~~~~~~~~~ 198 (504)
T 1t5h_X 132 ------------LVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAE-SRVLFMSTQVGLRHGRHNV 198 (504)
T ss_dssp ------------TEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHH-HHHHHHHHTTCCCSSTTCE
T ss_pred ------------hhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHH-HHHHHHHHhhCCCCCCCce
Confidence 11100 01111134568999999999999999999999999954 445555566788 88999
Q ss_pred EEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCe
Q 004348 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (759)
Q Consensus 432 ~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sL 511 (759)
+++.+|++|+.++.+.++.+|+.|+++++.+. +++..+++.|+++++|+++++|++++.|++.........++++|
T Consensus 199 ~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~l 274 (504)
T 1t5h_X 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274 (504)
T ss_dssp EEECSCTTSHHHHTTTHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTC
T ss_pred EEeecchhhcchHHHHHHHHHHcCceEEeCCC----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccc
Confidence 99999999999876778999999999999864 48999999999999999999999999998764221233468999
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCC---cccC
Q 004348 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG---VEIE 588 (759)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g---~~vp 588 (759)
|.+++|||++++++.++|.+.++ ++++|.||+||++. +.... ..+.+++|+|+++++++|+|+++ +++|
T Consensus 275 r~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~-~~~~~----~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~ 346 (504)
T 1t5h_X 275 RHVTFAGATMPDAVLETVHQHLP---GEKVNIYGTTEAMN-SLYMR----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVA 346 (504)
T ss_dssp CEEEECCTTCCHHHHHHHHHHCC---SEEEEEEEETTTEE-EEEEE----SCSSSSEEBCCTTCCEEEECTTSCTTCBCC
T ss_pred cEEEEcCCcCCHHHHHHHHHhcC---cceeeeeccccccc-ccccc----CCCCCccccCCCCCceeEEeccCCCCCcCC
Confidence 99999999999999999999987 78999999999943 22211 23567899999999999999888 9999
Q ss_pred CCceEEEEEe-cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHH
Q 004348 589 GECSGYLCIK-SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESAL 648 (759)
Q Consensus 589 ~g~~GEL~I~-g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L 648 (759)
.|+.|||+|+ | |++++|||++|+.+.+.| .+|||+|||+|+ +|+||+|.|||++|
T Consensus 347 ~g~~GEl~v~gg--~~~~~GY~~~~~~t~~~f---~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 421 (504)
T 1t5h_X 347 NGEEGELIVAAS--DSAFVGYLNQPQATAEKL---QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421 (504)
T ss_dssp TTCCEEEEEECC--TTSCCCBTTCHHHHHHHE---ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHH
T ss_pred CCCcceEEEeCC--ceeeceecCCchhhhhhh---cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHH
Confidence 9999999999 7 899999999999999887 378999999998 89999999999999
Q ss_pred hcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHh-hcCCCccccEEEEeCCCCCCCCCcccHHHH
Q 004348 649 VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727 (759)
Q Consensus 649 ~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L 727 (759)
.+||+|.+|+|++.+++..++.++|||+++++...+ .++|++++++ +||.||+|+.|+++++||+|+||||||++|
T Consensus 422 ~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L 498 (504)
T 1t5h_X 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS---ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498 (504)
T ss_dssp TTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCC---HHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHH
T ss_pred HhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcC---HHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHH
Confidence 999999999999999988899999999998765444 5789999998 999999999999999999999999999999
Q ss_pred HHHHh
Q 004348 728 RKIAS 732 (759)
Q Consensus 728 ~~~~~ 732 (759)
++.+.
T Consensus 499 ~~~~~ 503 (504)
T 1t5h_X 499 VQQVS 503 (504)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 98764
No 14
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.1e-74 Score=668.45 Aligned_cols=490 Identities=20% Similarity=0.223 Sum_probs=406.4
Q ss_pred HHHH-HHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYN-CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~-~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.+ +|.++++ ++ |++|+++.. .++++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||++
T Consensus 26 ~l~~~~l~~~~~-~~-~~~A~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 26 GTQLRKYMERYA-KL-GAIAFTNAV----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHHHH-HH-TCEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred cHHHHHHHhhhc-cc-CCceEEEcC----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 5777 7888887 78 999999741 257899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++|++|.++.+++.++|+++++++||+++... ..+......+ +....++.++....
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~------- 159 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL---------DKVITVQKTV----TTIKTIVILDSKVD------- 159 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH---------HHHHHHHHHS----TTCCEEEETTCSSC-------
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHHhcCC----CCCCEEEEeCCccc-------
Confidence 999999999999999999999999999999987642 2233322222 22444554432210
Q ss_pred cCCCCccchhhhcCCCCCC-CCccccC-----C-CCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH---hCCCCC
Q 004348 360 WQDGRDIWWQDVVPKYPTK-CEVEWVD-----A-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA---FDYKPS 429 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~-~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~---~~l~~~ 429 (759)
......|++........ .+..... + ++++||+|||||||.||||+++|++++.+ ....... ++++++
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~-~~~~~~~~~~~~~~~~ 236 (548)
T 2d1s_A 160 --YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTR-FSHARDPIYGNQVSPG 236 (548)
T ss_dssp --BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHH-HHHHTCTTTSCCCCTT
T ss_pred --ccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHH-HHHhhchhhccCCCcc
Confidence 00112244433222111 1111222 4 89999999999999999999999995444 4444333 678899
Q ss_pred cEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCC
Q 004348 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 509 (759)
Q Consensus 430 d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~ 509 (759)
|++++.+|++|+.++...++.+| .|+++++.+. +++..+++.|+++++|+++++|++++.|++... ....+++
T Consensus 237 d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~ 309 (548)
T 2d1s_A 237 TAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK----FDEETFLKTLQDYKCTSVILVPTLFAILNKSEL--LNKYDLS 309 (548)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC----CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--GGGSCCT
T ss_pred ceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--ccccccc
Confidence 99999999999998655567777 9999999853 499999999999999999999999999998654 2345789
Q ss_pred CeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccC
Q 004348 510 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIE 588 (759)
Q Consensus 510 sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp 588 (759)
+||.+++|||++++++.++|.+.++ +++++|.||+||++..++..... ..+.+++|+|+++++++|+| +++++++
T Consensus 310 ~lr~i~~gG~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~ 385 (548)
T 2d1s_A 310 NLVEIASGGAPLSKEVGEAVARRFN--LPGVRQGYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLG 385 (548)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHTT--CSCCEEEEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCC
T ss_pred ceeEEEEcCccCCHHHHHHHHHHcC--CCceeeccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCC
Confidence 9999999999999999999999986 47899999999998766543221 34668999999999999999 6899999
Q ss_pred CCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHh
Q 004348 589 GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALV 649 (759)
Q Consensus 589 ~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~ 649 (759)
.|+.|||+|+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.
T Consensus 386 ~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~ 461 (548)
T 2d1s_A 386 PNRRGEVCVKG--PMLMKGYVNNPEATKELIDE--EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL 461 (548)
T ss_dssp TTCCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH
T ss_pred CCCCeEEEECC--HHHhhhhcCChHHhhhcccC--CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH
Confidence 99999999999 89999999999999888743 78999999998 899999999999999
Q ss_pred cCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCcccc-EEEEeCCCCCCCCCcccHHHHH
Q 004348 650 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPD-KIHWAPGLPKTRSGKIMRRILR 728 (759)
Q Consensus 650 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~-~iv~v~~lP~T~~GKvdR~~L~ 728 (759)
+||+|.+|+|++.+++..++.++|||+++++...+ .++|+++|+++|+.|++|. .|+++++||+|++|||+|++|+
T Consensus 462 ~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~ 538 (548)
T 2d1s_A 462 QHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT---EKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIR 538 (548)
T ss_dssp TSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHH
T ss_pred hCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCC---HHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHH
Confidence 99999999999999998899999999998765444 5789999999999999999 9999999999999999999999
Q ss_pred HHHhcccCC
Q 004348 729 KIASRQLDE 737 (759)
Q Consensus 729 ~~~~~~~~~ 737 (759)
+++.+.+++
T Consensus 539 ~~~~~~i~~ 547 (548)
T 2d1s_A 539 EILKKPVAK 547 (548)
T ss_dssp HHHHSCC--
T ss_pred HHHhhhhhc
Confidence 999876553
No 15
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=5.5e-75 Score=665.80 Aligned_cols=478 Identities=18% Similarity=0.233 Sum_probs=400.7
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhC
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaG 281 (759)
+.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~-~~p~~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 3 LLEQIEKWAA-ETPDQTAFVWR------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HCCCceEEEeC------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 6788999998 89999999986 6889999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccC
Q 004348 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (759)
Q Consensus 282 av~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (759)
++++|++|.++.+++.+++++++++++|++........ . ..++..+.
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~--------------------~-~~~~~~~~------------ 122 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL--------------------P-VRIVSEDN------------ 122 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC--------------------S-SEEEETHH------------
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc--------------------c-cceechhh------------
Confidence 99999999999999999999999999999754321100 0 00110000
Q ss_pred CCCccchhhh--cCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 362 DGRDIWWQDV--VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 362 ~~~~~~~~~~--~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
+.+. ........+.....+++++||+|||||||.||||+++|+++ .+...+....+++.++|++++.+|++
T Consensus 123 ------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~ 195 (512)
T 3fce_A 123 ------LKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCL-VSFTKWAVEDFNLQTGQVFLNQAPFS 195 (512)
T ss_dssp ------HHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHH-HHHHHHHHHHTTCCSSCEEEECSCTT
T ss_pred ------hhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHH-HHHHHHHHHhcCCCCCCEEEEeCCcc
Confidence 0000 00011112233457899999999999999999999999995 45566666778999999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|+.++ +.++.+|+.|+++++.+... .+++..+++.|+++++|++.++|+++..++.... ....++++||.+++|||
T Consensus 196 ~~~~~-~~~~~~l~~G~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 196 FDLSV-MDIYPSLVTGGTLWAIDKDM-IARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS--FSESMLPNMKTFLFCGE 271 (512)
T ss_dssp SGGGH-HHHHHHHHTTCEEEECCHHH-HHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT--CSTTTSTTCCEEEECSS
T ss_pred HhHHH-HHHHHHHhCCCEEEECCHHH-hhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc--ccchhCccccEEEEecC
Confidence 99984 67899999999999986421 1378999999999999999999999999887654 23457899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC---CCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEE
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~ 596 (759)
++++++.++|.+.++ +++++|.||+||+++.++...... ......++|+|+++++++|+|++|+++|.|+.|||+
T Consensus 272 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~ 349 (512)
T 3fce_A 272 VLPNEVARKLIERFP--KATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIV 349 (512)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEE
T ss_pred cCCHHHHHHHHHHCC--CCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEE
Confidence 999999999999986 489999999999987655322111 123567899999999999999999999999999999
Q ss_pred EecCCCcccccccCChhhHHhhhc-ccCCcEEEeCCeee------------------ccEeeCHHHHHHHHhcCCccceE
Q 004348 597 IKSSWPGAFRTLYGDHERYETTYF-KPFPGYYFTGDGCS------------------SGHRIGTAEVESALVSHPQCAEA 657 (759)
Q Consensus 597 I~g~~~~v~~GY~~~~e~~~~~~~-~~~~g~y~TGDl~~------------------~G~rI~~~eIE~~L~~~p~V~ea 657 (759)
|+| |+++.|||++|+.+.+.|. .+.+|||+|||+|+ +|+||+|.|||++|.+||+|.+|
T Consensus 350 v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a 427 (512)
T 3fce_A 350 IVG--PSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGA 427 (512)
T ss_dssp EES--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEE
T ss_pred Eec--cccChhhcCCchhhhhccccCCCCEEEeCCceEEecCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceE
Confidence 999 9999999999999999885 23457999999987 89999999999999999999999
Q ss_pred EEEeEecCCCCeEEEEEEEEcCCCCCc-HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 658 AVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 658 ~Vv~~~~~~~~~~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+|++++++..++.++|+|++.++.... ..+.++|+++|+++||.||+|+.|+++++||+|++|||||++|++.+...
T Consensus 428 ~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 428 VIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp EEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred EEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhc
Confidence 999999988889999999998765433 34568899999999999999999999999999999999999999998754
No 16
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.1e-75 Score=676.10 Aligned_cols=490 Identities=20% Similarity=0.219 Sum_probs=387.2
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 40 ~l~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 112 (563)
T 1amu_A 40 TIHQLFEEQVS-KRPNNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 112 (563)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH-HCCCCeEEEeC------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 58899999998 89999999976 689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.++++++++++||+++... . ....+ .....+..+....
T Consensus 113 Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~---------~----~~~~~----~~~~~~~~~~~~~--------- 166 (563)
T 1amu_A 113 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV---------H----LIHNI----QFNGQVEIFEEDT--------- 166 (563)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------H----HHTTS----CCCSEEEECCCST---------
T ss_pred CCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchh---------h----hhhhc----cccCceeeecchh---------
Confidence 99999999999999999999999999999976531 1 11111 1111222221110
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
+ .............++|++||+|||||||.||||+++|+++ .+...+....+++.++|++++.+|++|
T Consensus 167 -------~----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~~ 234 (563)
T 1amu_A 167 -------I----KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGI-SNLKVFFENSLNVTEKDRIGQFASISF 234 (563)
T ss_dssp -------T----TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHH-HHHHHHHHHTSCCCTTCEEEECSCTTS
T ss_pred -------h----ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHH-HHHHHHHHHhcCCCCCCEEEEeCCccH
Confidence 0 0000111122346789999999999999999999999995 455566667789999999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
+.++ +.++.+|+.|+++++.+... .+++..+++.|+++++|++.++|+++..|... .+++||.+++|||+
T Consensus 235 ~~~~-~~~~~~l~~G~~~v~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~lr~~~~gG~~ 304 (563)
T 1amu_A 235 DASV-WEMFMALLTGASLYIILKDT-INDFVKFEQYINQKEITVITLPPTYVVHLDPE--------RILSIQTLITAGSA 304 (563)
T ss_dssp THHH-HHHHHHHTTTCEEEECCHHH-HTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------TCCSCSEEEEESSC
T ss_pred HHHH-HHHHHHHHCCCEEEEcChHh-hcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------ccccccEEEEEEec
Confidence 9884 67899999999999976422 23889999999999999999999998776432 46799999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCC-CCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG-AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
++++++++|.+. ++++|.||+||++.+++..... ....+.+++|+|++|++++|+|++++++|.|+.|||+|+|
T Consensus 305 l~~~~~~~~~~~-----~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g 379 (563)
T 1amu_A 305 TSPSLVNKWKEK-----VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGG 379 (563)
T ss_dssp CCHHHHHHHTTT-----SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEE
T ss_pred CCHHHHHHHHhC-----CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEec
Confidence 999999988763 7899999999998765433221 1123567899999999999999999999999999999999
Q ss_pred CCCcccccccCChhhHHhhhcc----cCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccce
Q 004348 600 SWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAE 656 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~~----~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~e 656 (759)
|++++|||++|+.+.+.|.. +.+|||+|||+|+ +|+||+|.|||++|.+||+|.+
T Consensus 380 --~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~ 457 (563)
T 1amu_A 380 --EGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE 457 (563)
T ss_dssp --TTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEE
T ss_pred --hhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcce
Confidence 99999999999999988854 2356999999998 8999999999999999999999
Q ss_pred EEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccC
Q 004348 657 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLD 736 (759)
Q Consensus 657 a~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~ 736 (759)
|+|++.+++..++.++|||+...... .++|+++|+++||.||+|+.|+++++||+|++|||||++|++.......
T Consensus 458 a~Vv~~~~~~~~~~~~a~vv~~~~~~-----~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 532 (563)
T 1amu_A 458 TAVSVHKDHQEQPYLCAYFVSEKHIP-----LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTFGM 532 (563)
T ss_dssp EEEEEEECTTSCEEEEEEEEESSCCC-----HHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCCC--
T ss_pred EEEEEeecCCCCeEEEEEEEeCCCCC-----HHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccccccc
Confidence 99999999888899999999875432 5789999999999999999999999999999999999999876432111
Q ss_pred --CCCCCCCCCChhhHHHHHhhh
Q 004348 737 --ELGDTSTLADPGVVDQLIALA 757 (759)
Q Consensus 737 --~~~~~~~~~~p~~~~~~~~~~ 757 (759)
....+.+..+..+.+-|.+++
T Consensus 533 ~~~~~~p~~~~e~~l~~iw~~~L 555 (563)
T 1amu_A 533 RVDYEAPRNEIEETLVTIWQDVL 555 (563)
T ss_dssp -----------------------
T ss_pred ccccCCCCCHHHHHHHHHHHHHh
Confidence 111223444445555555554
No 17
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.1e-74 Score=660.78 Aligned_cols=477 Identities=17% Similarity=0.207 Sum_probs=404.0
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+.++|+++++ ++||++|+++. ++++||+||+++++++|++|++. |+++|++|+++++|++++++++|||+++
T Consensus 3 l~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 3 LLHAIQTHAE-TYPQTDAFRSQ------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCCeEEEcC------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 6788999998 89999999976 68999999999999999999875 8889999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.++++++++++||+++........ ....
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------------------~~~~------------------ 119 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------------------QQIQ------------------ 119 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------------------CSSC------------------
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------------------cccc------------------
Confidence 9999999999999999999999999999996553210000 0000
Q ss_pred CCCCccchhhhcCCC-CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
.+.+.+..... ..........+++++||+|||||||.||||+++|+++ .+...+....+++.++|++++.+|++
T Consensus 120 ----~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~ 194 (511)
T 3e7w_A 120 ----TVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANL-QSFTDWICADFPVSGGKIFLNQAPFS 194 (511)
T ss_dssp ----EEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHH-HHHHHHHHHHSTTTTTCEEEECSCTT
T ss_pred ----eecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHH-HHHHHHHHHhcCCCccceEEEeCCcc
Confidence 01111221111 1112223456889999999999999999999999995 45566666778999999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|+.+ .+.++.+|+.|+++++.+... .+++..+++.|+++++|++.++|++++.|+.... .....++++|.+++|||
T Consensus 195 ~~~~-~~~~~~~l~~G~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 195 FDLS-VMDLYPCLQSGGTLHCVTKDA-VNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG--FSQDLLPHADTFMFCGE 270 (511)
T ss_dssp STHH-HHHHHHHHHTTCEEEECCHHH-HHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECSS
T ss_pred HHHH-HHHHHHHHhcCCEEEEcChhh-hcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc--cccccCCcccEEEEecC
Confidence 9998 467899999999999975421 1378999999999999999999999999988754 23457899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC---CCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEE
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~ 596 (759)
++++++.+++.+.++ +++++|.||+||+++.++...... ......++|+|++|++++|+|++|+++|.|+.|||+
T Consensus 271 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~ 348 (511)
T 3e7w_A 271 VLPVSVAKALLERFP--KAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIV 348 (511)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEE
T ss_pred CCCHHHHHHHHHHCC--CcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEE
Confidence 999999999999986 489999999999987654322111 123456899999999999999999999999999999
Q ss_pred EecCCCcccccccCChhhHHhhhcccCCc-EEEeCCeee------------------ccEeeCHHHHHHHHhcCCccceE
Q 004348 597 IKSSWPGAFRTLYGDHERYETTYFKPFPG-YYFTGDGCS------------------SGHRIGTAEVESALVSHPQCAEA 657 (759)
Q Consensus 597 I~g~~~~v~~GY~~~~e~~~~~~~~~~~g-~y~TGDl~~------------------~G~rI~~~eIE~~L~~~p~V~ea 657 (759)
|+| |++++|||++|+.+.+.|+....+ ||+|||+|+ +|+||+|.|||++|.+||+|.+|
T Consensus 349 v~g--~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a 426 (511)
T 3e7w_A 349 IAG--PSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSA 426 (511)
T ss_dssp EES--TTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEE
T ss_pred Eec--CccChhhCCCcccchhhhcCCCCCEEEeCCCeEEccCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceE
Confidence 999 899999999999999998754333 799999987 89999999999999999999999
Q ss_pred EEEeEecCCCCeEEEEEEEEcCCCCCc-HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 658 AVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 658 ~Vv~~~~~~~~~~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+|++++++..++.++|+|+++++.... .++.++|+++|+++||.||+|+.|+++++||+|++|||||++|++.+...
T Consensus 427 ~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 427 VVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp EEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred EEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhh
Confidence 999999888889999999998765433 35578999999999999999999999999999999999999999998754
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=5.3e-74 Score=660.34 Aligned_cols=488 Identities=25% Similarity=0.322 Sum_probs=393.6
Q ss_pred ccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHH
Q 004348 197 GITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276 (759)
Q Consensus 197 ~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA 276 (759)
...|++.++|+++++ +||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 21 ~~~~~~~~~l~~~~~--~p~~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 92 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET--RAGKTAYIDD------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLG 92 (529)
T ss_dssp -CCCHHHHHHHHTGG--GTTSEEEECS------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHH
T ss_pred cceeHHHHHHHhhhc--cCCceEEEeC------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 445688999988875 9999999965 57899999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCc-cEEEEeccCccccc
Q 004348 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQSAMTR 355 (759)
Q Consensus 277 ~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~vi~~~~~~~~~~ 355 (759)
|+++|++++|+++.++.+++.+++++++++++|+++... ..+....... +.. ..+++.+....
T Consensus 93 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~--- 156 (529)
T 2v7b_A 93 ALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV---------QNVTQALESA----EHDGCQLIVSQPRES--- 156 (529)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH---------HHHHHHHHCC-------CCEEEEECC------
T ss_pred HHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh---------hHHHHHHhhc----cccCceEEEeccccc---
Confidence 999999999999999999999999999999999987642 2222222211 122 33443332110
Q ss_pred cccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEe
Q 004348 356 ENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCT 435 (759)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~ 435 (759)
. ......|++.........+.....++|++||+|||||||.||||+++|+++...........+++.++|++++.
T Consensus 157 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~ 231 (529)
T 2v7b_A 157 --E---PRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSA 231 (529)
T ss_dssp --------CCCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEES
T ss_pred --c---cccccchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEe
Confidence 0 00011344443322222223345789999999999999999999999999534444444445788999999999
Q ss_pred cCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEE
Q 004348 436 ADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515 (759)
Q Consensus 436 ~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~ 515 (759)
+|++|+.++...++.+|..|+++++.+. .+++..+++.|+++++|++.++|+++..|++.... ......+||.++
T Consensus 232 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~~~ 306 (529)
T 2v7b_A 232 AKLFFAYGLGNGLTFPLSVGATAILMAE---RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL--PARADVAIRICT 306 (529)
T ss_dssp SCTTSHHHHHHHTHHHHHHTCEEECCCS---CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC--CCGGGCCCCEEE
T ss_pred ecHHHHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc--ccccCCceEEEE
Confidence 9999999876677889999999998742 25899999999999999999999999999876432 111123899999
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEE
Q 004348 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYL 595 (759)
Q Consensus 516 ~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL 595 (759)
+|||++++++.++|.+.++ ++++|.||+||++.+.+..... ....+++|+|++|++++|+|++|+++|.|+.|||
T Consensus 307 ~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl 381 (529)
T 2v7b_A 307 SAGEALPREIGERFTAHFG---CEILDGIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDL 381 (529)
T ss_dssp ECSSCCCHHHHHHHHHHHS---CCEEEEEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEE
T ss_pred EcCCCCCHHHHHHHHHHhC---CceeeeEchhhcCceeeccccC--CCccCCcccCCCCCEEEEECCCCCCCCCCCccEE
Confidence 9999999999999999987 7899999999997655443322 2456889999999999999999999999999999
Q ss_pred EEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccce
Q 004348 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAE 656 (759)
Q Consensus 596 ~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~e 656 (759)
+|+| |+++.|||++++.+...|. +|||+|||+|+ +|+||+|.|||++|.+||+|.+
T Consensus 382 ~v~g--~~~~~gY~~~~~~t~~~f~---~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 456 (529)
T 2v7b_A 382 YIKG--PSAAVMYWNNREKSRATFL---GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLE 456 (529)
T ss_dssp EEEC--TTCCCCBTTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEE
T ss_pred EEec--CCcccccCCChHHHHHhhh---cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcce
Confidence 9999 8999999999999988874 68999999988 8999999999999999999999
Q ss_pred EEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 657 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 657 a~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
|+|++. ++..++.++|+|++.++....+.+.++|+++|+++||.||+|+.|+++++||+|++||++|++|++
T Consensus 457 ~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 457 AAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred EEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 999999 666788899999998765434445678999999999999999999999999999999999999985
No 19
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.6e-75 Score=719.61 Aligned_cols=548 Identities=20% Similarity=0.276 Sum_probs=325.3
Q ss_pred CcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcccccccccccccccccccccCCCcccccCCCccccHHH
Q 004348 124 NDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICY 203 (759)
Q Consensus 124 ~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~ 203 (759)
..-+|++++.+++|++++..+++.+++.+...+.....+ ..|...... ...+ ...+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~p------------~~~tl~ 64 (979)
T 3tsy_A 7 HHHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSD----VIFRSKLPD------IYIP------------NHLSLH 64 (979)
T ss_dssp --------------------------------------C----CCBCCSSCC------CCCC------------TTSCHH
T ss_pred ccccccCcccCcchhhhhhhHHHHHHHhhhhcccCCCCC----ceeecCCCC------CCCC------------CCCCHH
Confidence 346899999999999999999999998887776654322 222211111 0111 112689
Q ss_pred HHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCe
Q 004348 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (759)
Q Consensus 204 ~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav 283 (759)
++|+++++ ++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 65 ~~l~~~a~-~~pd~~Al~~~~----~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 65 DYIFQNIS-EFATKPCLINGP----TGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp HHHTTTGG-GTTTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHH-hCCCCeEEEECC----CCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 99999999 899999999752 2578999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCC
Q 004348 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (759)
Q Consensus 284 ~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (759)
++|++|.++.+++.++++++++++||+++..... +...... ..+ .++.++.... .. ...
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~-----~~~-~~~~~~~~~~-----~~-~~~ 198 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDK---------IKPLQND-----DGV-VIVCIDDNES-----VP-IPE 198 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTT---------SHHHHHT-----SCC-EEEECCCCTT-----SC-CCT
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHH---------HHHHhhc-----CCc-eEEEeCCccc-----cc-CCc
Confidence 9999999999999999999999999998765421 1111111 122 2344433210 00 011
Q ss_pred CccchhhhcCCCCC---CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH---HHhCCCCCcEEEEecC
Q 004348 364 RDIWWQDVVPKYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTAD 437 (759)
Q Consensus 364 ~~~~~~~~~~~~~~---~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~l~~~d~~l~~~~ 437 (759)
....|.+....... ..+.....++|++||+|||||||+||||+++|++++.+...... ..+++.++|++++.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 278 (979)
T 3tsy_A 199 GCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLP 278 (979)
T ss_dssp TEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSC
T ss_pred ccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECc
Confidence 22334444332211 22333567899999999999999999999999996544332221 1356788999999999
Q ss_pred cchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEe
Q 004348 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (759)
Q Consensus 438 l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (759)
++|+.++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|
T Consensus 279 ~~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~g 352 (979)
T 3tsy_A 279 MFHIYALNSIMLCGLRVGAAILIMPK----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE--TEKYDLSSIRVVKSG 352 (979)
T ss_dssp SSSHHHHHHTHHHHHHHTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG--GGTSCCTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHhcCcEEEEeCC----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc--ccCCCccceEEEEEc
Confidence 99999877778899999999999864 489999999999999999999999999988754 345578999999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccC---CCCCCCCCCCcCCCCCCceEEEECC-CCcccCCCceE
Q 004348 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL---PGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSG 593 (759)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~---~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~G 593 (759)
||++++++.++|.+.++ +++++|.||+||++.+++... ....+.+.+++|+|++|++++|+|+ +++++|.|+.|
T Consensus 353 g~~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~G 430 (979)
T 3tsy_A 353 AAPLGKELEDAVNAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPG 430 (979)
T ss_dssp SCCCCSSHHHHHHHHCT--TCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCE
T ss_pred CCCCCHHHHHHHHHHCC--CCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCcc
Confidence 99999999999999986 489999999999997654321 1223456788999999999999994 69999999999
Q ss_pred EEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCcc
Q 004348 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQC 654 (759)
Q Consensus 594 EL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V 654 (759)
||+|+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|
T Consensus 431 El~i~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V 506 (979)
T 3tsy_A 431 EICIRG--HQIMKGYLNNPAATAETIDK--DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDI 506 (979)
T ss_dssp EEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEESCC------------------------
T ss_pred EEEEEC--CCccccccCChhhhhhhccC--CCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCc
Confidence 999999 99999999999999988743 78999999998 89999999999999999999
Q ss_pred ceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 655 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 655 ~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
.+|+|++++++..++.++|||+.+++...+ .++|+++|+++||.||+|..|+++++||+|+||||||++|++.+...
T Consensus 507 ~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 507 TDVAVVAMKEEAAGEVPVAFVVKSKDSELS---EDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEecccCCCcEEEEEEEECCCCCCC---HHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 999999999988889999999987654333 57899999999999999999999999999999999999999988754
No 20
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.3e-75 Score=675.60 Aligned_cols=487 Identities=22% Similarity=0.277 Sum_probs=317.5
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 31 tl~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 31 PLTRILTVGVQ-SHPHSLAIICG------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp CTTHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCceEEEcC------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 57899999999 89999999976 789999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++.+++++++++++|+++.... .............. .....++..+....
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------- 167 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEV----FSNNQFIDSLHDVN----LSPEIILMLNHQAT-------- 167 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGG----GSSSHHHHHHHHTT----CCCSEEEEETCCTT--------
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEcccccc----ccHHHHHHHHhhcc----cCcceEEEecCCcc--------
Confidence 999999999999999999999999999999876421 11112222222222 44555555443210
Q ss_pred CCCCccchhhhcCCCC-CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
...+.+...... ...+.....+++++||+|||||||+||||+++|++++ .........+++.++|++++.+|++
T Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 ----DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYD-YSVRASAEICGLNSNTRLLCALPAP 242 (544)
T ss_dssp ----SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHH-HHHHHHHHHTTCCTTCEEEECSCTT
T ss_pred ----ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHH-HHHHHHHHHhCCCCCCeEEEecCcc
Confidence 111111111111 1112234568999999999999999999999999954 4556666778999999999999999
Q ss_pred hhchhhH-HHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeC
Q 004348 440 WITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (759)
Q Consensus 440 ~~~g~~~-~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (759)
|.+++.. .++.+|+.|+++++.+. +++..+++.|+++++|++.++|+++..|++.... ...++++||.+++||
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~i~~gG 316 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ--YKDQIQSLKLLQVGG 316 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT--THHHHTTCCEEEEES
T ss_pred eEeecchHHHHHHHHcCCEEEECCC----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh--ccccCCcceEEEEcC
Confidence 9887554 68899999999999864 4899999999999999999999999999876432 233678999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCC-CCceEEEECCCCcccCCCceEEEEE
Q 004348 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCI 597 (759)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~-~g~~~~IvD~~g~~vp~g~~GEL~I 597 (759)
|++++++.+++.+.++ ++++|.||+||++...+... .......+++|+|+ ++++++|+|++++++|.|+.|||+|
T Consensus 317 ~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v 392 (544)
T 3o83_A 317 ASFPESLARQVPEVLN---CKLQQVFGMAEGLVNYTRLD-DSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLAT 392 (544)
T ss_dssp SCCCHHHHTHHHHHHC---SEEEEEEECTTSCEEECCTT-SCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHhC---CcEEeeeccccccceeecCC-CchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEE
Confidence 9999999999999987 89999999999985443221 11112346899997 8999999999999999999999999
Q ss_pred ecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEE
Q 004348 598 KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAA 658 (759)
Q Consensus 598 ~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~ 658 (759)
+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|.+|+
T Consensus 393 ~g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 468 (544)
T 3o83_A 393 RG--PYTFCGYYQSPEHNSQVFDE--DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAA 468 (544)
T ss_dssp EC--TTSCSCCTTCHHHHHHHBCT--TCCEEEEEEEEECTTSCEEEEEEEC-----------------------------
T ss_pred ec--CCcchhhcCChhhhhhhCCC--CCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEE
Confidence 99 89999999999999988854 78999999998 899999999999999999999999
Q ss_pred EEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHh-hcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 659 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 659 Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
|++++++..++.++|||+.++... ..++|++++++ +||.||+|+.|+++++||+|+||||||++|++++..
T Consensus 469 vv~~~~~~~g~~~~a~vv~~~~~~----~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 469 LVAIVDEQFGEKSCAFIVSRNPEL----KAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEeccCCCCCceEEEEEEeCCCCC----CHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 999999888999999999876322 25678889988 799999999999999999999999999999998763
No 21
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3.7e-75 Score=675.69 Aligned_cols=467 Identities=22% Similarity=0.282 Sum_probs=310.1
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 76 ~l~~~l~~~a~-~~pd~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 76 CVHELFEAQAA-RAPDAVALLHE------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HCCCCeEEECC------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 68999999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.++++++++++||+++...... .....++ ..+..
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------------------~~~~~~~-~~~~~--------- 198 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------------------TGTTTLY-VEDEA--------- 198 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------------------CSSEEEE-CCC-----------
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------------------cCCccee-eeccc---------
Confidence 99999999999999999999999999999987643210 1111111 11100
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
..............++|++||+|||||||.||||+++|++++ +.... ...+++.++|++++.+|++|
T Consensus 199 -----------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~-~~~~~-~~~~~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 199 -----------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALT-GTYLG-QDYAGFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ----------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHH-HHHSS-CCSSCCSTTCEEEECSCTTS
T ss_pred -----------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHH-HHHHh-hhhcCCCCCCEEEEecCccH
Confidence 000011112234578999999999999999999999999954 33322 34467889999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
+.+ .+.++.+|+.|+++++.+.. .+++..+++.|+++++|++.++|++++.|++.... ++++||.+++|||+
T Consensus 266 ~~~-~~~~~~~l~~G~~~v~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 266 DAF-GLELFGALLFGARCVLQSGQ--NPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-----AFEGVRYAITGGEP 337 (570)
T ss_dssp STH-HHHHHHHHTTTCEEEECSSS--SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----GGTTCSEEEEESSC
T ss_pred HHH-HHHHHHHHhcCCEEEEcCCc--cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----hCCCceEEEEeccc
Confidence 776 56889999999999998653 35899999999999999999999999999876432 57899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCC--CCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEe
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
+++++.+++.+.++ +++++|.||+||++++.+.... ........++|+|++|++++|+|+++++++.|+.|||+|+
T Consensus 338 l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~ 415 (570)
T 4gr5_A 338 ASVPHVAKARRDHP--ALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVA 415 (570)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEE
T ss_pred CCHHHHHHHHHhCC--CcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEe
Confidence 99999999999886 4899999999999876553321 1122345679999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhccc------CCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCc
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKP------FPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQ 653 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~------~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~ 653 (759)
| |++++|||++|+.+.+.|..+ .+|||+|||+|+ +|+||+|.|||++|.+||+
T Consensus 416 g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~ 493 (570)
T 4gr5_A 416 G--AGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPA 493 (570)
T ss_dssp E--TTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC--------------------------
T ss_pred e--cccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCC
Confidence 9 999999999999999988642 247999999998 8999999999999999999
Q ss_pred cceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHH
Q 004348 654 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731 (759)
Q Consensus 654 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~ 731 (759)
|.+|+|++.+++..++.++|||+.+++.. +...++|+++|+++||.||+|..|+++++||+|++|||||++|++..
T Consensus 494 V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 494 VRQAAVLAQDSRLGDKQLVAYVVAERADA--PPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cceEEEEEeeCCCCCeEEEEEEEecCCCC--CcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 99999999998888899999999865432 11267899999999999999999999999999999999999998753
No 22
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=4.7e-75 Score=670.54 Aligned_cols=488 Identities=22% Similarity=0.265 Sum_probs=367.2
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+++.+. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 19 ~l~~~l~~~a~-~~p~~~a~~~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 19 NLWDFLERAAA-LFGRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp CTHHHHHHHHH-HSTTCEEEEECTT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-hCCCceEEEEecC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 57889999998 8999999996421 23688999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.++|+++++++||+++... ..+......+ +.+..+++++....
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-------- 154 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL---------PLVEAIRGEL----KTVQHFVVMDEKAP-------- 154 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHGGGC----SSCCEEEESSSCCC--------
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH---------HHHHHHHhhC----CCccEEEEecCCCC--------
Confidence 99999999999999999999999999999986532 2222222111 34555555443210
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHH-HHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT-FKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~-~~~~~~l~~~d~~l~~~~l~ 439 (759)
.....|.+.+...... ....++++++|+|||||||.||||+++|++++.+.... ....++++++|++++.+|++
T Consensus 155 --~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 229 (541)
T 1v25_A 155 --EGYLAYEEALGEEADP---VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMF 229 (541)
T ss_dssp --TTCEEHHHHCCSCCCC---CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTT
T ss_pred --cccccHHHHhhccCCc---ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccch
Confidence 0123354444332221 23567899999999999999999999999965443321 22356788999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|+.++ ..++.+|+.|+++++.+. .+++..+++.|+++++|+++++|+++..|++... ....++++||.+++|||
T Consensus 230 h~~~~-~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~ 303 (541)
T 1v25_A 230 HVNAW-CLPYAATLVGAKQVLPGP---RLDPASLVELFDGEGVTFTAGVPTVWLALADYLE--STGHRLKTLRRLVVGGS 303 (541)
T ss_dssp SHHHH-THHHHHHHHTCEEEECTT---CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH--HHTCCCSSCCEEEECSS
T ss_pred hhhHH-HHHHHHHhcCceEEeeCC---CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhh--ccCCcchhccEEEECCC
Confidence 99885 467889999999999753 2599999999999999999999999999987643 12347899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC----C-----CCCCCCcCCCCCCceEEEECCCCcccCC-
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA----W-----PQKPGSATFPFFGVQPVIVDEKGVEIEG- 589 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~----~-----~~~~~~iG~p~~g~~~~IvD~~g~~vp~- 589 (759)
+++++++++| +.++ ++++|.||+||++.+++...... . ....+++|+|++|++++|+|++++++|.
T Consensus 304 ~l~~~~~~~~-~~~g---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~ 379 (541)
T 1v25_A 304 AAPRSLIARF-ERMG---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKD 379 (541)
T ss_dssp CCCHHHHHHH-HHTT---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSS
T ss_pred CCCHHHHHHH-HHhC---CceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCC
Confidence 9999999999 6666 88999999999987665432210 0 0134789999999999999999999984
Q ss_pred -CceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHh
Q 004348 590 -ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALV 649 (759)
Q Consensus 590 -g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~ 649 (759)
++.|||+|+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.
T Consensus 380 ~~~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~ 455 (541)
T 1v25_A 380 GKALGEVQLKG--PWITGGYYGNEEATRSALTP--DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM 455 (541)
T ss_dssp SCCCEEEEEES--TTSBSSCBTCHHHHHTTBCT--TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC--
T ss_pred CCcceEEEEeC--cchhccccCChhhhhhhccC--CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH
Confidence 3689999999 89999999999999988753 78999999998 899999999999999
Q ss_pred cCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHh-hcCCCccccEEEEeCCCCCCCCCcccHHHHH
Q 004348 650 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728 (759)
Q Consensus 650 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~ 728 (759)
+||+|.+|+|++++++..++.++|||+++ +...+ .++|++++++ +||.||+|+.|+++++||+|+||||+|++|+
T Consensus 456 ~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~---~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~ 531 (541)
T 1v25_A 456 GHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPT---PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALR 531 (541)
T ss_dssp --------CEEEEECSSSSEEEEECC-----------------------CCCTTTSCSBC--------------CCTTHH
T ss_pred hCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCC---HHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHH
Confidence 99999999999999998899999999986 22222 4678899999 8999999999999999999999999999999
Q ss_pred HHHhccc
Q 004348 729 KIASRQL 735 (759)
Q Consensus 729 ~~~~~~~ 735 (759)
+.+...+
T Consensus 532 ~~~~~~~ 538 (541)
T 1v25_A 532 EQYKNYY 538 (541)
T ss_dssp HHSTTSS
T ss_pred HHHHHhh
Confidence 9886543
No 23
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=6.1e-75 Score=664.95 Aligned_cols=474 Identities=22% Similarity=0.274 Sum_probs=309.2
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 7 tl~~~l~~~a~-~~pd~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 79 (509)
T 3ivr_A 7 TLADVYRRNAA-LFPDRTAFMVD------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALI 79 (509)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HCCCceEEEEC------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 58899999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|++.... ..+......+ +.+..++.++...
T Consensus 80 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~--------- 137 (509)
T 3ivr_A 80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR---------DIVAGVLPSL----GGVKKAYAIGDGS--------- 137 (509)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH---------HHHHHHGGGC----SSCCEEEESSCCC---------
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEECcchh---------hhHHhhhccc----CCceEEEEcCCCC---------
Confidence 99999999999999999999999999999987642 2212222211 3455555543311
Q ss_pred CCCCccchhhhcC-CCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVP-KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
..|.+... ......+.....++|++||+|||||||.||||+++|+++ .+...+....+++.++|++++.+|++
T Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~ 211 (509)
T 3ivr_A 138 -----GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNL-LIAQSSLVDAWRLTEADVNLGMLPLF 211 (509)
T ss_dssp -----SSCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHH-HHHHHHHHHHTTCCTTCEEEECSCTT
T ss_pred -----cChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHH-HHHHHHHHHhhCCCCCcEEEEeCCCc
Confidence 11222221 111222334567899999999999999999999999995 45566667779999999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|+.++. .++.+++.|+++++.. .+++..+++.|+++++|++.++|+++..|++... ..++++||.++.+|+
T Consensus 212 ~~~g~~-~~~~~~~~~g~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~l~~lr~~~~~g~ 282 (509)
T 3ivr_A 212 HVTGLG-LMLTLQQAGGASVIAA----KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA----PAQLASLRAVTGLDT 282 (509)
T ss_dssp SHHHHH-HHHHHHHHTCEEEECS----SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC----GGGGTTCCEEEEECC
T ss_pred chhHHH-HHHHHHHhCCcEEEec----ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc----ccchhhhheecccCC
Confidence 999864 4555556666666654 2599999999999999999999999999988752 346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
+ ++.+++.+.++ +++++|.||+||++++++..... ....++|+|++|++++|+|++++++|.|+.|||+|+|
T Consensus 283 ~---~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g 354 (509)
T 3ivr_A 283 P---ETIERFEATCP--NATFWATFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRG 354 (509)
T ss_dssp H---HHHHHHHHHCT--TCEEEEEEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEES
T ss_pred h---HHHHHHHHhcC--CCeEEcccCccccccccccCccc---cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEec
Confidence 7 88888998885 48999999999999766543322 2334599999999999999999999999999999999
Q ss_pred CCCcccccccCChhhHHhhhcccCCcEEEeCCeee---------------------ccEeeCHHHHHHHHhcCCccceEE
Q 004348 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS---------------------SGHRIGTAEVESALVSHPQCAEAA 658 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~---------------------~G~rI~~~eIE~~L~~~p~V~ea~ 658 (759)
|++++|||++|+.+.+.|. +|||+|||+|+ +|+||+|.|||++|.+||+|.+|+
T Consensus 355 --~~~~~gY~~~~~~t~~~f~---~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~ 429 (509)
T 3ivr_A 355 --PTVFKGYWNNAAATQHAFR---NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429 (509)
T ss_dssp --TTSCCEETTCHHHHHHHTG---GGSEEEEEEEEECTTSCEEEEEEC--------------------------------
T ss_pred --CCccccccCCHHHhHHHhh---cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEE
Confidence 8999999999999998873 78999999998 799999999999999999999999
Q ss_pred EEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 659 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 659 Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
|++++++..++.++++|+++++...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++.+...
T Consensus 430 vv~~~~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 430 VIGVPDPQWSEAIKAVCVCKPGESIA---ADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEeccccccCcEEEEEEEeCCCCCCC---HHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 99999988899999999987765433 57899999999999999999999999999999999999999988754
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.4e-73 Score=655.60 Aligned_cols=479 Identities=18% Similarity=0.218 Sum_probs=390.3
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+.+. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 5 ~l~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 5 DMIDSIEQFAQ-TQADFPVYDCL------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HCCCCcceecC------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 57889999998 89999999976 688999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|+++........+. ++.+...
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~---------------------~~~~~~~---------- 126 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGIS---------------------LVSLSEI---------- 126 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTSE---------------------EEEHHHH----------
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccCc---------------------ccchhhh----------
Confidence 999999999999999999999999999999876532211110 1100000
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH--hCCCCCcEEEEecCc
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADC 438 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~--~~l~~~d~~l~~~~l 438 (759)
.................++|+++|+|||||||.||||+++|++++. ...+.... +++.+++++++..++
T Consensus 127 --------~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (521)
T 3l8c_A 127 --------ESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLS-FTNWMIEDAAFDVPKQPQMLAQPPY 197 (521)
T ss_dssp --------HHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHH-HHHHHHHCTTTCCCSSCEEECCSCT
T ss_pred --------hhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHH-HHHHHhhccccCCCCCCeEEecCCc
Confidence 0000000111122345689999999999999999999999999544 34444433 678889999999999
Q ss_pred chhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeC
Q 004348 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (759)
Q Consensus 439 ~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (759)
+|+.+ .+.++.+|+.|+++++.+... ..++..+++.|+++++|++.++|+++..++.... ....++++||.+++||
T Consensus 198 ~~~~~-~~~~~~~l~~G~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG 273 (521)
T 3l8c_A 198 SFDLS-VMYWAPTLALGGTLFALPKEL-VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--FCQAKMPALTHFYFDG 273 (521)
T ss_dssp TSGGG-HHHHHHHHHTTCEEEECCGGG-TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECS
T ss_pred cHHHH-HHHHHHHHhcCCEEEEcCHHH-hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc--cccccCccceEEEEec
Confidence 99988 467888999999999986532 2489999999999999999999999999887654 2345789999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC---CCCCCCCcCCCCCCceEEEECCCCcccCCCceEEE
Q 004348 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYL 595 (759)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL 595 (759)
|++++++.+++.+.++ +++++|.||+||+++.++...... .....+++|+|++|++++|+|++|++++.|+.|||
T Consensus 274 ~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl 351 (521)
T 3l8c_A 274 EELTVSTARKLFERFP--SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEI 351 (521)
T ss_dssp SCCCHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEE
T ss_pred ccCCHHHHHHHHHHCC--CceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEE
Confidence 9999999999999985 489999999999987654321111 11345689999999999999999999999999999
Q ss_pred EEecCCCcccccccCChhhHHhhhcc-cCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccc
Q 004348 596 CIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCA 655 (759)
Q Consensus 596 ~I~g~~~~v~~GY~~~~e~~~~~~~~-~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ 655 (759)
+|+| |++++|||++|+.+.+.|+. +.+|||+|||+|+ +|+||+|.|||++|.+||+|.
T Consensus 352 ~v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~ 429 (521)
T 3l8c_A 352 IVTG--PAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVA 429 (521)
T ss_dssp EEES--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEE
T ss_pred Eecc--cccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcc
Confidence 9999 89999999999999999863 3457999999998 899999999999999999999
Q ss_pred eEEEEeEecC-CCCeEEEEEEEEcCCCCC----cHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHH
Q 004348 656 EAAVVGVEHE-VKGQGIYAFVTLVEGVPY----SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 730 (759)
Q Consensus 656 ea~Vv~~~~~-~~~~~lva~Vv~~~~~~~----~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~ 730 (759)
+|+|++.++. ..++.++|||+++++... ..++.++|+++|+++||.||+|..|+++++||+|++|||||++|++.
T Consensus 430 ~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~ 509 (521)
T 3l8c_A 430 SAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINE 509 (521)
T ss_dssp EEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHH
T ss_pred eEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhh
Confidence 9999988754 346889999999876431 12457899999999999999999999999999999999999999998
Q ss_pred Hhcc
Q 004348 731 ASRQ 734 (759)
Q Consensus 731 ~~~~ 734 (759)
+..+
T Consensus 510 ~~~~ 513 (521)
T 3l8c_A 510 VNNR 513 (521)
T ss_dssp TC--
T ss_pred hhcC
Confidence 8754
No 25
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.3e-74 Score=668.51 Aligned_cols=491 Identities=18% Similarity=0.224 Sum_probs=314.1
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|.++++ ++||++|++...+. ..++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 21 tl~~~l~~~a~-~~p~~~a~~a~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 98 (550)
T 3rix_A 21 TAGEQLHKAMK-RYALVPGTIAFTDA-HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 98 (550)
T ss_dssp CHHHHHHHHHH-HHHTSTTCEEEEET-TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCCceEEEeeec-CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHc
Confidence 68899999998 89999987622110 22578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|+++... ..+......+ +.+..+++++....
T Consensus 99 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-------- 157 (550)
T 3rix_A 99 GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL---------QKILNVQKKL----PIIQKIIIMDSKTD-------- 157 (550)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH---------HHHHHHHHHC----TTCCEEEETTCSSC--------
T ss_pred CCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHHHhhC----CCcceEEEEcCCcc--------
Confidence 99999999999999999999999999999987642 3333333333 45666666543321
Q ss_pred CCCCccchhhhcCCCC-------CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH---hCCCCCc
Q 004348 361 QDGRDIWWQDVVPKYP-------TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA---FDYKPSD 430 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~---~~l~~~d 430 (759)
......+.+.+.... ...+.....+++++||+|||||||.||||+++|++++.+. ...... +++.++|
T Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~-~~~~~~~~~~~~~~~~ 235 (550)
T 3rix_A 158 -YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRF-SHARDPIFGNQIIPDT 235 (550)
T ss_dssp -BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHH-HHHTCTTTSCCCCTTC
T ss_pred -ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHH-HHhhhhhccccCCCCc
Confidence 001122222221100 1111122345789999999999999999999999955443 333322 4678899
Q ss_pred EEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCC
Q 004348 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (759)
Q Consensus 431 ~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~s 510 (759)
++++.+|++|+.++ +.++.+|+.|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....++++
T Consensus 236 ~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~ 308 (550)
T 3rix_A 236 AILSVVPFHHGFGM-FTTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL--IDKYDLSN 308 (550)
T ss_dssp EEEECSCTTSHHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG--GGGSCCTT
T ss_pred EEEEechHHHHHHH-HHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc--ccccCccc
Confidence 99999999999985 678889999999999854 489999999999999999999999999998754 34567899
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccCC
Q 004348 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEG 589 (759)
Q Consensus 511 Lr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~ 589 (759)
||.+++|||++++++.++|.+.++. ..++|.||+||+++.++..... ..+.+++|+|+++++++|+| +++++++.
T Consensus 309 lr~i~~gG~~l~~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~ 384 (550)
T 3rix_A 309 LHEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGV 384 (550)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCT
T ss_pred ccEEEEecCCCCHHHHHHHHHHcCC--CccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCC
Confidence 9999999999999999999999983 3589999999999876544332 34678899999999999999 47999999
Q ss_pred CceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhc
Q 004348 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVS 650 (759)
Q Consensus 590 g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~ 650 (759)
|+.|||+|+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+
T Consensus 385 g~~GEl~v~g--~~v~~GY~~~~~~t~~~~~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (550)
T 3rix_A 385 NQRGELCVRG--PMIMSGYVNNPEATNALIDK--DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460 (550)
T ss_dssp TCCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTCCEEEC-------------------------
T ss_pred CCCeEEEEeC--CCcchhhcCChhhhhhhcCC--CCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHh
Confidence 9999999999 89999999999999887643 78999999998 8999999999999999
Q ss_pred CCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCcc-ccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 651 HPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA-PDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 651 ~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~v-P~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
||+|.+|+|++++++..++.++++|+++++...+ .++|+++++++|++|+. |..|+++++||+|+||||||++|++
T Consensus 461 ~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~ 537 (550)
T 3rix_A 461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT---EKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIRE 537 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcceEEEEEeecCCCCceEEEEEEecCCCCCC---HHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHH
Confidence 9999999999999998899999999988765433 57899999999998854 5579999999999999999999999
Q ss_pred HHhcc
Q 004348 730 IASRQ 734 (759)
Q Consensus 730 ~~~~~ 734 (759)
++...
T Consensus 538 ~~~~~ 542 (550)
T 3rix_A 538 ILIKA 542 (550)
T ss_dssp -----
T ss_pred HHHhh
Confidence 98754
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.5e-73 Score=652.26 Aligned_cols=456 Identities=21% Similarity=0.306 Sum_probs=368.2
Q ss_pred HHHHHHhhcccccCCC-eEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGD-KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd-~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.++|+++++ ++|+ ++|+++. ++++||+||+++++++|++|+ .|++|+|+++|++++++++|||++
T Consensus 23 tl~~~l~~~a~-~~p~d~~Al~~~------~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~ 90 (505)
T 3nyq_A 23 SLFPALSPAPT-GAPADRPALRFG------ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALL 90 (505)
T ss_dssp -CCTTTSSCCC-SGGGGSEEEEET------TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-hCCCCCeEEEEC------CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 56788888888 6776 9999986 789999999999999998875 388999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++||+|.++.+++.+++++++++++|++...... . .. ..+.. +.++..
T Consensus 91 ~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-------~-------~~----~~~~~-~~~~~~--------- 142 (505)
T 3nyq_A 91 AGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-------P-------AL----GALER-VDVDVR--------- 142 (505)
T ss_dssp HTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-------G-------GG----TTSEE-EECCTT---------
T ss_pred hCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-------h-------hh----ccccc-cccccc---------
Confidence 99999999999999999999999999999997653110 0 00 11111 111100
Q ss_pred cCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
.....+.....++|++||+|||||||+||||+++|+++ .+........+++.++|++++.+|++
T Consensus 143 ---------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~ 206 (505)
T 3nyq_A 143 ---------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRAL-ATTLDALADAWQWTGEDVLVQGLPLF 206 (505)
T ss_dssp ---------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHH-HHHHHHHHHHHTCCTTCEEEECCCTT
T ss_pred ---------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHH-HHHHHHHHHHhCCCCCcEEEEeccHH
Confidence 00111223456889999999999999999999999994 55566667778999999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc-ccccCCCCCeeEEEEeC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLRVLGSVG 518 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~-~~~~~~l~sLr~v~~gG 518 (759)
|..++++.++.+|+.|+++++.+. +++..+++.+ ++++|+++++|+++..|++.... .....+++++|.+++||
T Consensus 207 ~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg 281 (505)
T 3nyq_A 207 HVHGLVLGILGPLRRGGSVRHLGR----FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGS 281 (505)
T ss_dssp SHHHHTTTTHHHHHHTCEEEECSS----CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECS
T ss_pred HHHHHHHHHHHHHhcCCEEEECCC----CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECC
Confidence 999887789999999999999754 4899999999 88999999999999999874321 11223567899999999
Q ss_pred CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCC---CceEEE
Q 004348 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG---ECSGYL 595 (759)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~---g~~GEL 595 (759)
|++++++.+++.+.++ ++++|.||+||++..++..... ....+++|+|++|++++|+|+++++++. |+.|||
T Consensus 282 ~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl 356 (505)
T 3nyq_A 282 AALPVHDHERIAAATG---RRVIERYGMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEI 356 (505)
T ss_dssp SCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEE
T ss_pred CCCCHHHHHHHHHhcC---CeeecccchhhcccccccCCCC--CCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEE
Confidence 9999999999999987 7899999999998765543322 3456889999999999999999999886 899999
Q ss_pred EEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee--------------------ccEeeCHHHHHHHHhcCCccc
Q 004348 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS--------------------SGHRIGTAEVESALVSHPQCA 655 (759)
Q Consensus 596 ~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~--------------------~G~rI~~~eIE~~L~~~p~V~ 655 (759)
+|+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|.
T Consensus 357 ~v~g--~~v~~GY~~~~~~t~~~f~~--~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~ 432 (505)
T 3nyq_A 357 QVRG--PNLFTEYLNRPDATAAAFTE--DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVR 432 (505)
T ss_dssp EEES--TTSCCEETTCHHHHHHTBCT--TSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEE
T ss_pred EEec--CchhhhhCCChhHhhhhhcC--CCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCcc
Confidence 9999 99999999999999998864 78999999998 899999999999999999999
Q ss_pred eEEEEeEecCCCCeEEEEEEEEcCCC-CCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 656 EAAVVGVEHEVKGQGIYAFVTLVEGV-PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 656 ea~Vv~~~~~~~~~~lva~Vv~~~~~-~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
+|+|++.+++..++.++|||++.++. ..+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++
T Consensus 433 ~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 433 EAAVTGEPDPDLGERIVAWIVPADPAAPPA---LGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESSTTSCCC---HHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred EEEEEeeECCCCCcEEEEEEEECCCCCCCC---HHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 99999999998899999999997643 222 578999999999999999999999999999999999999986
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.6e-71 Score=635.49 Aligned_cols=475 Identities=19% Similarity=0.243 Sum_probs=364.2
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhC
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaG 281 (759)
+.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++ +||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~-~~pd~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 3 LDFWLYKQAQ-QNGHHIAITDG------QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCCHHHHHHH-HHTTSEEEECS------SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-hcCCceEEEeC------CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 5577888998 89999999976 68999999999999999999987 89999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCccc-chHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI-HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 282 av~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
++++|+++.++.+++.+++++++++++|++.......... .+... ..... ........ ....
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~-----~~~~ 135 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDI-EFAGR-----------DITTNGLL-----DNTM 135 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccc-eeeee-----------eccccccc-----cccc
Confidence 9999999999999999999999999999987654322111 00000 00000 00000000 0000
Q ss_pred CCCCccchhhhcCCCC-CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
.......+........ .........++|++||+|||||||.||||+++|++++ .........+++.++|++++.+|++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~ 214 (501)
T 3ipl_A 136 GIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHY-ASAIGCKESLGFDRDTNWLSVLPIY 214 (501)
T ss_dssp --------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHH-HHHHHHHHHTCCCTTCEEEECSCTT
T ss_pred ccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHH-HHHHHHHHhhCCCccCEEEEeCcHH
Confidence 0000000000110000 0011224578999999999999999999999999954 4455666778999999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|+.++ ..++.+|+.|+++++.+. +++..+++.|+++++|++.++|++++.|++.... ...+||.+++|||
T Consensus 215 ~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 215 HISGL-SVLLRAVIEGFTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH-----EPYNLQKILLGGA 284 (501)
T ss_dssp SHHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC-----SCTTCCEEEECSS
T ss_pred HHHHH-HHHHHHHHcCceEEeCCC----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC-----CcCcccEEEEeCC
Confidence 99986 458899999999999864 4999999999999999999999999999887542 1238999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
++++++.+++.+ ++ ++++|.||+||+++..+.........+.+++|+|+++++++|+|++ .|..|||+|+|
T Consensus 285 ~l~~~~~~~~~~-~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~GEl~v~g 355 (501)
T 3ipl_A 285 KLSATMIETALQ-YN---LPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGHGELMIKG 355 (501)
T ss_dssp CCCHHHHHHHHH-TT---CCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCCEEEEEES
T ss_pred CCCHHHHHHHHH-hC---CCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCccEEEEec
Confidence 999999999987 44 8899999999998755433222122356789999999999999986 45679999999
Q ss_pred CCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEE
Q 004348 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVV 660 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv 660 (759)
|++++|||++++.+.. | .+|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|+
T Consensus 356 --~~~~~gY~~~~~~t~~--~--~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv 429 (501)
T 3ipl_A 356 --ANVMNGYLYPTDLTGT--F--ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCV 429 (501)
T ss_dssp --TTSCSCCSBSTTCCCS--E--ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEE
T ss_pred --cchhhhhCcChhhcch--h--cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEE
Confidence 8999999999988876 3 378999999998 89999999999999999999999999
Q ss_pred eEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 661 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+.+++..++.++++|+...... .++|+++|+++||.||+|+.|+++++||+|+||||||++|++....+
T Consensus 430 ~~~~~~~g~~~~a~v~~~~~~~-----~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 430 GHPDDTWGQVPKLYFVSESDIS-----KAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEEETTTEEEEEEEEEESSCCC-----HHHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EEecccCCceEEEEEEeCCCCC-----HHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 9999988999999999754432 57899999999999999999999999999999999999999887643
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=8.1e-70 Score=633.95 Aligned_cols=492 Identities=17% Similarity=0.162 Sum_probs=389.4
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+++.+. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 12 tl~~~l~~~a~-~~p~~~a~~~~~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 12 SLVDVVRLRAL-HSPNKKSCTFLNK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp SHHHHHHHHHH-HCTTSEEEEEEET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH-hCCCCeEEEEEcC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 58899999998 8999999998642 23689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCC---CHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHH-HHHhhcCCCccEEEEeccCcccccc
Q 004348 281 GAVHSVVFAGF---SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL-DECAKSGISVDVCLTYENQSAMTRE 356 (759)
Q Consensus 281 Gav~vpldp~~---~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (759)
|++++|++|.+ +.+++.+++++++++++|++.... ..+.... ... +....+..+.
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~-------- 147 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHI---------KKFTADELNTN----PKFLKIPAIA-------- 147 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHH---------HHHCC-----C----CEETTEEEEE--------
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHH---------HHHHHhhhhhc----ccccccceee--------
Confidence 99999999998 457899999999999999875421 1000000 000 1111111110
Q ss_pred ccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEec
Q 004348 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (759)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~ 436 (759)
+++...............++|++||+|||||||.||||+++|++++ +...+....+++.++|++++.+
T Consensus 148 -----------~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~-~~~~~~~~~~~~~~~d~~l~~~ 215 (590)
T 3kxw_A 148 -----------LESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLL-DNLNKIFTSFHMNDETIIFSWL 215 (590)
T ss_dssp -----------GGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHH-HHHHHHHHHTTCCTTCEEEECS
T ss_pred -----------chhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHH-HHHHHHHHhhCCCCcCeEEEec
Confidence 0000000011112234578999999999999999999999999954 4455666778999999999999
Q ss_pred CcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc-ccccCCCCCeeEEE
Q 004348 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLRVLG 515 (759)
Q Consensus 437 ~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~-~~~~~~l~sLr~v~ 515 (759)
|++|++++...++.+|+.|+++++.+......++..+++.|+++++|++.++|+++..|++.... .....++++||.++
T Consensus 216 p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~ 295 (590)
T 3kxw_A 216 PPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAF 295 (590)
T ss_dssp CTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEE
T ss_pred CCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHh
Confidence 99999997666889999999999975321111688999999999999999999999998876332 23456789999999
Q ss_pred EeCCCCCHHHHHHHHHHhCC---CCccEeeeeccccccceecccCCC-------------------------CCCCCCCC
Q 004348 516 SVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPG-------------------------AWPQKPGS 567 (759)
Q Consensus 516 ~gGe~l~~~~~~~~~~~~g~---~~~~l~n~YG~TE~~~~~~~~~~~-------------------------~~~~~~~~ 567 (759)
+|||+++++++++|.+.++. ++++++|.||+||++.+++..... ......++
T Consensus 296 ~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (590)
T 3kxw_A 296 NGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVS 375 (590)
T ss_dssp ECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEEC
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEec
Confidence 99999999999999998842 235799999999999876543211 01123468
Q ss_pred cCCCCCCceEEEECCC-CcccCCCceEEEEEecCCCcccccccCChhhHHhhhccc----CCc--EEEeCCeee------
Q 004348 568 ATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP----FPG--YYFTGDGCS------ 634 (759)
Q Consensus 568 iG~p~~g~~~~IvD~~-g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~----~~g--~y~TGDl~~------ 634 (759)
+|+|+++ ++|+|++ ++++|.|+.|||+|+| |++++|||++|+.+.+.|... .+| ||+|||+|+
T Consensus 376 ~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~ddG~l 451 (590)
T 3kxw_A 376 SGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQS--NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENEL 451 (590)
T ss_dssp CCEESSE--EEEECTTTCCBCCTTBCEEEEEES--TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEETTEE
T ss_pred cCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeC--CcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEECCEE
Confidence 8999998 8889986 8999999999999999 899999999999999988641 124 999999998
Q ss_pred ------------ccEeeCHHHHHHHH-hcCCccc--eEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhc
Q 004348 635 ------------SGHRIGTAEVESAL-VSHPQCA--EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 699 (759)
Q Consensus 635 ------------~G~rI~~~eIE~~L-~~~p~V~--ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~L 699 (759)
+|+||+|.|||++| ..||.|. +|+|++++++. ++.++++|+++++... +...++|+++|+++|
T Consensus 452 ~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~l 529 (590)
T 3kxw_A 452 YVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMD-DVAQDNLFNEIFELV 529 (590)
T ss_dssp EEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCC-HHHHHHHHHHHHHHH
T ss_pred EEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEecccccc-chhHHHHHHHHHHHH
Confidence 89999999999999 8899999 89999998875 7889999998876422 233567777787777
Q ss_pred CC-Ccccc-EEEEe--CCCCCCCCCcccHHHHHHHHhcc
Q 004348 700 GA-FAAPD-KIHWA--PGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 700 p~-~~vP~-~iv~v--~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+. +++|. .++++ ++||+|++|||||++|++++...
T Consensus 530 ~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 530 YENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp HHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 74 67775 45544 79999999999999999998754
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=6.1e-71 Score=639.54 Aligned_cols=495 Identities=16% Similarity=0.121 Sum_probs=295.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCC----CCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEAND----PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~----~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA 276 (759)
++.++|+++++ ++||++|+++.+.. .+..+++||+||+++++++|++|++.|+ +||+|+|+++|++++++++||
T Consensus 21 tl~~~l~~~a~-~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA 98 (562)
T 3ite_A 21 PPSHYIETWAK-THPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVG 98 (562)
T ss_dssp CTTHHHHHHHH-HCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHH
Confidence 46789999999 89999999986421 1224789999999999999999999999 799999999999999999999
Q ss_pred HHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccc
Q 004348 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356 (759)
Q Consensus 277 ~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (759)
|+++|++++|++|.++.+++.+++++++++++|+++........ .....++...
T Consensus 99 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~------------------~~~~~~~~~~-------- 152 (562)
T 3ite_A 99 IMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVEL------------------PPETKVLDTK-------- 152 (562)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCC------------------CTTCEEEETT--------
T ss_pred HHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccccc------------------Cccceeeccc--------
Confidence 99999999999999999999999999999999998664321100 0111111110
Q ss_pred ccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHH-------HhCCCCC
Q 004348 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY-------AFDYKPS 429 (759)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~-------~~~l~~~ 429 (759)
...+.+.+.............+++++||+|||||||.||||+++|++++......... .+.+...
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (562)
T 3ite_A 153 --------NQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGV 224 (562)
T ss_dssp --------CHHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTT
T ss_pred --------chhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcC
Confidence 0111111111111122233457889999999999999999999999965443322211 2457888
Q ss_pred cEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCC
Q 004348 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 509 (759)
Q Consensus 430 d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~ 509 (759)
+++++..++.|+.+ ...++.++..|+++++.+.. ..++.+++.++++++|++.++|++++.+.... .+++
T Consensus 225 ~~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~------~~~~ 294 (562)
T 3ite_A 225 GKFLCLASRAFDVH-IGEMFLAWRFGLCAVTGERL---SMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP------EDAP 294 (562)
T ss_dssp CEEECCSCTTSTHH-HHHHHHHHHTTCEEEECCHH---HHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG------GGST
T ss_pred ceEEEecCchhhhh-HHHHHHHHhcccEEEecchh---hCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc------cccC
Confidence 99999999999887 56788999999999986431 23577889999999999999999988774332 3678
Q ss_pred CeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECC-CCcccC
Q 004348 510 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIE 588 (759)
Q Consensus 510 sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp 588 (759)
+||.+++|||++++++.++|.+.++ ++++|.||+||++..++...... ....+++|+|+++++++|+|+ .++++|
T Consensus 295 ~lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~ 370 (562)
T 3ite_A 295 HLVYLGVGGEKMTPRTQQIWSSSDR---VALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVK 370 (562)
T ss_dssp TCCEEEEESSCCCHHHHHHHTTCSS---CEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCC
T ss_pred ceEEEEEecCCCCHHHHHHHhhCCC---cEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCC
Confidence 9999999999999999999988665 89999999999987554432211 245678999999999999996 678899
Q ss_pred CCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHh
Q 004348 589 GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALV 649 (759)
Q Consensus 589 ~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~ 649 (759)
.|+.|||+|+| |++++|||++|+.+...+ .+.++||+|||+|+ +|+||+|.|||++|.
T Consensus 371 ~g~~GEl~v~g--~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~ 447 (562)
T 3ite_A 371 KGMAGELVIEG--SLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR 447 (562)
T ss_dssp TTSCEEEEEES--TTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEEEEC---------------------
T ss_pred CCCceEEEEec--cccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHH
Confidence 99999999999 899999999998776443 22334999999998 899999999999999
Q ss_pred cC-CccceEEEEeEecCCCCeEEEEEEEEcCCCCCc----------HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCC-
Q 004348 650 SH-PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS----------EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT- 717 (759)
Q Consensus 650 ~~-p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~----------~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T- 717 (759)
+| |.|.+++|++.+++..++..+++++...+.... +.+.++|+++|+++||.||+|+.|+++++||+|
T Consensus 448 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~ 527 (562)
T 3ite_A 448 SLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRD 527 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCC
Confidence 98 888999999888877666655555543332211 123468999999999999999999999999998
Q ss_pred CCCcccHHHHHHHHhccc--CCCCCCCCCCChh
Q 004348 718 RSGKIMRRILRKIASRQL--DELGDTSTLADPG 748 (759)
Q Consensus 718 ~~GKvdR~~L~~~~~~~~--~~~~~~~~~~~p~ 748 (759)
++|||||++|++++.... +-..+++++.||.
T Consensus 528 ~~GKi~r~~L~~~~~~~~~~~~~~~~s~~~~~p 560 (562)
T 3ite_A 528 TSAKTDAKALEHMFHTLSLGELFGESSSLVNKP 560 (562)
T ss_dssp ---------------------------------
T ss_pred CCCcchHHHHHHHHhccCHHHHhccCccccCCC
Confidence 899999999999987542 1234566776653
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.9e-69 Score=626.29 Aligned_cols=489 Identities=20% Similarity=0.214 Sum_probs=390.5
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
.++.++|+++++ .+|+.+++.... +.++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 21 ~tl~~~l~~~a~-~~p~~~~~~~~~---~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 96 (576)
T 3gqw_A 21 PTLVDALDYAAL-SSAGMNFYDRRC---QLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQY 96 (576)
T ss_dssp SSHHHHHHHHTT-SSCEEEEECTTS---CEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhh-CCCCeEEeCCCC---CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 378999999998 899988775321 2368999999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCC-------HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcc
Q 004348 280 IGAVHSVVFAGFS-------SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352 (759)
Q Consensus 280 aGav~vpldp~~~-------~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~ 352 (759)
+|++++|+++.++ .+++.++++++++++||++++.. ..+....... +.+ .++..
T Consensus 97 ~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~----~~~-~~~~~----- 157 (576)
T 3gqw_A 97 AGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL---------PLVNAATHDN----PEL-HVLSH----- 157 (576)
T ss_dssp TTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH---------HHHHHHGGGC----TTC-EEEEH-----
T ss_pred hCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH---------HHHHHhhccC----Ccc-eecch-----
Confidence 9999999999999 89999999999999999987632 2222211111 111 11110
Q ss_pred ccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEE
Q 004348 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432 (759)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~ 432 (759)
.+.+.... .........+++++||+|||||||.||||+++|++++.+........+++.++|++
T Consensus 158 --------------~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~ 221 (576)
T 3gqw_A 158 --------------AWFKALPE--ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRC 221 (576)
T ss_dssp --------------HHHHTSCC--CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCE
T ss_pred --------------hhhhcccc--cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceE
Confidence 01111111 11122335689999999999999999999999999655544333334789999999
Q ss_pred EEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc-ccccCCCCCe
Q 004348 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSL 511 (759)
Q Consensus 433 l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~-~~~~~~l~sL 511 (759)
++.+|++|+.++...++.++..|+++++.+.....+++..+++.|+++++|++.++|+++..+.+.... .....++++|
T Consensus 222 l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~l 301 (576)
T 3gqw_A 222 VSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCW 301 (576)
T ss_dssp EECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTC
T ss_pred EEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhh
Confidence 999999999997667788899999998875422223788999999999999999999999988776432 1234578999
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhCC---CCccEeeeeccccccceecccCCCCC----------------C----------
Q 004348 512 RVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW----------------P---------- 562 (759)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~~g~---~~~~l~n~YG~TE~~~~~~~~~~~~~----------------~---------- 562 (759)
|.+++|||+++++++++|.+.++. .+++++|.||+||++..++....... .
T Consensus 302 r~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 381 (576)
T 3gqw_A 302 RVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAV 381 (576)
T ss_dssp CEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCE
T ss_pred HhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCc
Confidence 999999999999999999998741 13789999999999987654321100 0
Q ss_pred CCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee--------
Q 004348 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------- 634 (759)
Q Consensus 563 ~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------- 634 (759)
....++|+|++|++++|+|++|+++|.|+.|||+|+| |++++|||++++.+...+ .+|||+|||+|+
T Consensus 382 ~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g--~~~~~gY~~~~~~~~~~~---~~g~~~TGDl~~~~dG~l~~ 456 (576)
T 3gqw_A 382 STFVNCGKALPEHGIEIRNEAGMPVAERVVGHICISG--PSLMSGYFGDQVSQDEIA---ATGWLDTGDLGYLLDGYLYV 456 (576)
T ss_dssp EEEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEEES--TTSCCCBTTCHHHHHHHH---HHSCEEEEEEEEEETTEEEE
T ss_pred cceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEEeC--ccccccccCCcccccccc---CCCeeeccceEEEECCEEEE
Confidence 0123799999999999999999999999999999999 899999999998776643 378999999998
Q ss_pred ----------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhc-CCCc
Q 004348 635 ----------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI-GAFA 703 (759)
Q Consensus 635 ----------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~L-p~~~ 703 (759)
+|+||+|.|||++|.+||+|.+++|++..++. +.++++++.... .+...++++++++++| +.|+
T Consensus 457 ~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~---~~~~~~~l~~~l~~~l~~~~~ 531 (576)
T 3gqw_A 457 TGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRIS---DEERRGQLIHALAARIQSEFG 531 (576)
T ss_dssp EEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCC---CHHHHHHHHHHHHHHHHHHHS
T ss_pred EecCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecC---chhHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999998887763 334455544332 2344678888898888 7899
Q ss_pred cccEEEEeC--CCCCCCCCcccHHHHHHHHhcccCC
Q 004348 704 APDKIHWAP--GLPKTRSGKIMRRILRKIASRQLDE 737 (759)
Q Consensus 704 vP~~iv~v~--~lP~T~~GKvdR~~L~~~~~~~~~~ 737 (759)
+|..+++++ +||+|++|||||++|++.+.+...+
T Consensus 532 ~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~ 567 (576)
T 3gqw_A 532 VTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAYAA 567 (576)
T ss_dssp CCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHHTC
T ss_pred CceeEEEECCCCcCcCCCccchHHHHHHHHHHHhhh
Confidence 999999988 8999999999999999999876543
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=5.4e-58 Score=520.58 Aligned_cols=395 Identities=19% Similarity=0.196 Sum_probs=305.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcC---CCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEAN---DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~---~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~ 277 (759)
++.++|+++++ ++||++|+++.+. ..+..+++||+||+++++++|++|+++|+ +||+|+|+++|++++++++|||
T Consensus 25 tl~~~l~~~a~-~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~ 102 (480)
T 3t5a_A 25 SLPAALRACAR-LQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGA 102 (480)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHH-hCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHH
Confidence 68899999999 8999999998752 11234899999999999999999999996 9999999999999999999999
Q ss_pred HHhCCeEEecCC---CCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccc
Q 004348 278 ARIGAVHSVVFA---GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (759)
Q Consensus 278 ~kaGav~vpldp---~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (759)
+++|++++||++ .++.+++.++|+++++++||+++... ..+.+...... ......++.++...
T Consensus 103 ~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~--- 168 (480)
T 3t5a_A 103 LQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRP--GESPPSIIEVDLLD--- 168 (480)
T ss_dssp HHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC--------CCEEEEGGGSC---
T ss_pred HHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccc--cccccceeEecccc---
Confidence 999999999999 88999999999999999999987642 11111111100 00111222222110
Q ss_pred ccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCC------
Q 004348 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP------ 428 (759)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~------ 428 (759)
.......+.....+++++||+|||||||+||||+++|++++. ........+.+.+
T Consensus 169 ------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~~~~~~ 229 (480)
T 3t5a_A 169 ------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRV-NFEQLMSGYFADTDGIPPP 229 (480)
T ss_dssp ------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHH-HHHHHHHHHCTTTTTCCCT
T ss_pred ------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHH-HHHHHHHHhccccccCCCC
Confidence 011111223345788999999999999999999999999544 4555556677777
Q ss_pred CcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcC--CcccccC
Q 004348 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG--NEYVTRY 506 (759)
Q Consensus 429 ~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~--~~~~~~~ 506 (759)
+|++++.+|++|+.++.+.++.+|+.|+++++.+.....+++..+++.|+++++| +.++|+++..|+... .......
T Consensus 230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~ 308 (480)
T 3t5a_A 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGR 308 (480)
T ss_dssp TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTC
T ss_pred CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccccc
Confidence 9999999999999998788999999999999975321112789999999999999 788888887776531 1123456
Q ss_pred CCCCeeEEEEeCCCCCHHHHHHHHHHhCC---CCccEeeeeccccccceecccCCCCC----------------------
Q 004348 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW---------------------- 561 (759)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~~~~~~~~~~g~---~~~~l~n~YG~TE~~~~~~~~~~~~~---------------------- 561 (759)
++++||.+++|||+++++++++|.+.++. ++++++|.||+||++..++.......
T Consensus 309 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 388 (480)
T 3t5a_A 309 DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGG 388 (480)
T ss_dssp CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSS
T ss_pred chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCC
Confidence 88999999999999999999999999852 34689999999999987665432210
Q ss_pred -CCCCCCcCCCCCCceEEEECCC-CcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc---------cCCcEEEeC
Q 004348 562 -PQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK---------PFPGYYFTG 630 (759)
Q Consensus 562 -~~~~~~iG~p~~g~~~~IvD~~-g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~---------~~~g~y~TG 630 (759)
....+++|+|++ ++++|+|++ ++++|.|+.|||+|+| |++++|||++|+.+.+.|.. +.+|||+||
T Consensus 389 ~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g--~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TG 465 (480)
T 3t5a_A 389 GATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHG--DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465 (480)
T ss_dssp SCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEES--TTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEE
T ss_pred CcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeC--CccccccccCcchhHHHHhhhhccccCCCCCCCeeecc
Confidence 123458999999 999999976 7999999999999999 89999999999999999841 145699999
Q ss_pred Ceee
Q 004348 631 DGCS 634 (759)
Q Consensus 631 Dl~~ 634 (759)
|+|+
T Consensus 466 Dlg~ 469 (480)
T 3t5a_A 466 DSGF 469 (480)
T ss_dssp EEEE
T ss_pred ceee
Confidence 9998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2.8e-49 Score=431.15 Aligned_cols=297 Identities=19% Similarity=0.203 Sum_probs=250.6
Q ss_pred CCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCC
Q 004348 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAP 465 (759)
Q Consensus 386 ~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~ 465 (759)
.+++|||+|||||||+||||+++|+++ .+........++++++|++++.+|++|++|+ ..++.+++.|+++++.+..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQL-AASAAMTGKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHH-HHHHHHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHH-HHHHHHHHHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc-
Confidence 478999999999999999999999995 4556667778999999999999999999985 5688899999999998643
Q ss_pred CCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeec
Q 004348 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWW 545 (759)
Q Consensus 466 ~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG 545 (759)
.+ .++.|+++++|++.++|++++.|++.... ..++++||.+++|||++++++.+++.+ ++ ++++|.||
T Consensus 113 --~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~---~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~---~~~~~~YG 180 (358)
T 4gs5_A 113 --AN---PLAGLDHADFDFVAMVPMQLQSILENSAT---SGQVDRLGKVLLGGAPVNHALAMQISD-LA---MPVYQSYG 180 (358)
T ss_dssp --SC---TTTTCSSCCCSEEEECHHHHHHHHHCTTT---GGGGGGGCSEEECSSCCCHHHHHHHHT-CS---SCEEEEEE
T ss_pred --cc---HHHHHHHhCCeEEEcChHHHHHhhccccc---cccCCcceEEEEcccCCCchheecccc-cC---ceEEeccc
Confidence 12 35678999999999999999999987542 346899999999999999999999876 34 88999999
Q ss_pred cccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCc
Q 004348 546 QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 625 (759)
Q Consensus 546 ~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g 625 (759)
+||++..++..... ....+++|.|+||+.+.+.+ .|||+++|++ . .+|
T Consensus 181 ~TEt~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~----------~Gel~~~g~~--~------------------~~g 228 (358)
T 4gs5_A 181 MTETVSHVALKALN--GPEASELYVFLPGIQYGVDE----------RGCLHISGAV--T------------------NGQ 228 (358)
T ss_dssp CGGGSSEEEEEECS--STTCCSCEEECTTCEEEECT----------TSEEEEESGG--G------------------TTC
T ss_pred cccccceeeccccc--ccccceeeccCCCeEEEecC----------cCceEEeccc--c------------------cCc
Confidence 99998866544322 23567889999999887744 4899999831 1 268
Q ss_pred EEEeCCeee------------------ccEeeCHHHHHHHH---hcCCccceEEEE-eEecCCCCeEEEEEEEEcCCCCC
Q 004348 626 YYFTGDGCS------------------SGHRIGTAEVESAL---VSHPQCAEAAVV-GVEHEVKGQGIYAFVTLVEGVPY 683 (759)
Q Consensus 626 ~y~TGDl~~------------------~G~rI~~~eIE~~L---~~~p~V~ea~Vv-~~~~~~~~~~lva~Vv~~~~~~~ 683 (759)
||+|||+|+ +|+||+|.|||++| .+||+|.+|+|+ +.+|+..++.++|+|+....
T Consensus 229 ~~~TGDlg~~d~~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~--- 305 (358)
T 4gs5_A 229 TVQTNDLVEIHGNAFQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP--- 305 (358)
T ss_dssp CEEEEEEEEECSSEEEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC---
T ss_pred ceecCCccccccCceEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC---
Confidence 999999998 89999999999877 568999999886 56788888999999876432
Q ss_pred cHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 684 SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 684 ~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
+...++|+++|+++||.||+|+.|+++++||+|++|||||++|++.+++
T Consensus 306 -~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 306 -EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp -HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC-
T ss_pred -CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhh
Confidence 4456889999999999999999999999999999999999999998764
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.3e-44 Score=403.45 Aligned_cols=311 Identities=20% Similarity=0.182 Sum_probs=248.3
Q ss_pred cCC-CCcEEEEeccCCCCCCcEEEEccchHHHHHHHHH---HHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEE
Q 004348 384 VDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF---KYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459 (759)
Q Consensus 384 ~~~-~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~---~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlv 459 (759)
..+ +++++|+|||||||.||||+++|+++... .... ...+++.++|++++..+++|..+....++.++..|++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSW-ANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHH-HHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHH-HHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 445 88999999999999999999999995433 3322 234689999999999999877766677888999999999
Q ss_pred EecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCcc
Q 004348 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (759)
Q Consensus 460 l~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~ 539 (759)
+.+. .++..+++.|+++++|++.++|+++..|++.........++++||.+++|||++++++.++|.+.+| ++
T Consensus 161 ~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~ 233 (436)
T 3qov_A 161 PAAA----GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN---VK 233 (436)
T ss_dssp CCCS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT---SE
T ss_pred eCCC----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC---cc
Confidence 8754 3889999999999999999999999999876432111224789999999999999999999999997 89
Q ss_pred Eeeeeccccccce-ecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccCCCceEEEEEecCCCcccccccCChhhHHh
Q 004348 540 ISDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (759)
Q Consensus 540 l~n~YG~TE~~~~-~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~ 617 (759)
++|.||+||+++. +..... .....+.|.+++.++|+| ++++++|.|+.|||+|+|.. ..
T Consensus 234 v~~~YG~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~--------------~~ 294 (436)
T 3qov_A 234 AYNSFGMTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD--------------RE 294 (436)
T ss_dssp EEEEEEEGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS--------------CC
T ss_pred EEecCcchhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC--------------cC
Confidence 9999999999654 332221 122367788899999999 78999999999999999921 11
Q ss_pred hhcccCCcEEEeCCeee----------------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCe
Q 004348 618 TYFKPFPGYYFTGDGCS----------------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 669 (759)
Q Consensus 618 ~~~~~~~g~y~TGDl~~----------------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~ 669 (759)
.+ ..+||+|||+|+ +|+||+|.|||++|.+||+|.+++|++.+++..++
T Consensus 295 ~~---~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~ 371 (436)
T 3qov_A 295 MM---PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQD 371 (436)
T ss_dssp SS---CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEE
T ss_pred Cc---eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCc
Confidence 11 257999999865 79999999999999999999999999999888889
Q ss_pred EEEEEEEEcCCCCCc-HHHHHHHHHHHHhhcCCC-ccccEEEEeC--CCCCCCCCcccHHH
Q 004348 670 GIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAF-AAPDKIHWAP--GLPKTRSGKIMRRI 726 (759)
Q Consensus 670 ~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~-~vP~~iv~v~--~lP~T~~GKvdR~~ 726 (759)
.++++|+++ +...+ ....++++++|+++|+.+ ++|..+++++ +||+|+ ||++|..
T Consensus 372 ~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 372 EMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 999999998 54332 223467788888888888 9999999999 999999 9999853
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=4e-43 Score=394.25 Aligned_cols=318 Identities=19% Similarity=0.178 Sum_probs=250.4
Q ss_pred ccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHH--HHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEE
Q 004348 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (759)
Q Consensus 383 ~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~--~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl 460 (759)
...++++++|+|||||||.||||+++|+++...... .....+++.++|++++..+++|..+....++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 346789999999999999999999999995433221 122357899999999999986433334567889999999988
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccE
Q 004348 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (759)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l 540 (759)
.+. .+++.+++.|+++++|++.++|+++..|++.........++++||.+++|||++++++.+++.+.+| +++
T Consensus 168 ~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v 240 (443)
T 2y4o_A 168 MSG----GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG---IDA 240 (443)
T ss_dssp CCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---CEE
T ss_pred CCC----CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC---cCE
Confidence 754 3899999999999999999999999999875321111112479999999999999999999999987 889
Q ss_pred eeeeccccccce-ecccCCCCCCCCCCCcCCCCCCceEEEECC-CCcccCCCceEEEEEecCCCcccccccCChhhHHhh
Q 004348 541 SDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (759)
Q Consensus 541 ~n~YG~TE~~~~-~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~ 618 (759)
+|.||+||+++. +...... .....+.|.+++.++|+|+ +|+++|.|+.|||+|+|. . .+.
T Consensus 241 ~~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~--t------------~~~ 302 (443)
T 2y4o_A 241 LDIYGLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL--T------------KEA 302 (443)
T ss_dssp EEEEEETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES--S------------CSS
T ss_pred EeccCchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC--C------------ccc
Confidence 999999998543 3322221 1112455778999999995 699999999999999982 1 111
Q ss_pred hcccCCcEEEeCCeee-------------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEE
Q 004348 619 YFKPFPGYYFTGDGCS-------------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 673 (759)
Q Consensus 619 ~~~~~~g~y~TGDl~~-------------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva 673 (759)
| ..+||+|||+|+ +|++|+|.|||++|.+||+|.+++|++++++..++.+++
T Consensus 303 ~---p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a 379 (443)
T 2y4o_A 303 M---PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDL 379 (443)
T ss_dssp S---CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEE
T ss_pred C---hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEE
Confidence 1 257999998754 799999999999999999999999999988777889999
Q ss_pred EEEEcC--CCCCcHHHHHHHHHHHHhhcCCCc-cccEEEEe--CCCCCCCCCcccHHHHH
Q 004348 674 FVTLVE--GVPYSEELRKSLVLAVRKQIGAFA-APDKIHWA--PGLPKTRSGKIMRRILR 728 (759)
Q Consensus 674 ~Vv~~~--~~~~~~~l~~~l~~~l~~~Lp~~~-vP~~iv~v--~~lP~T~~GKvdR~~L~ 728 (759)
+|++++ +........++|+++|+++|+.|+ +|..|.++ ++||+|++||++|+..+
T Consensus 380 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 380 AVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp EEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred EEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 999875 322122235788899999999875 99988888 59999999999997543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=6.4e-43 Score=391.93 Aligned_cols=314 Identities=18% Similarity=0.124 Sum_probs=251.0
Q ss_pred ccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHH--HHHHHHhCCCCCcEEEEecCcc-hhchhhHHHHHHhhcCcEEE
Q 004348 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCG-WITGHSYVTYGPMLNGASVV 459 (759)
Q Consensus 383 ~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~--~~~~~~~~l~~~d~~l~~~~l~-~~~g~~~~~~~~L~~G~tlv 459 (759)
...++++++|+|||||||.||||+++|+++..... ......++++++|++++..+++ |..+ ...++.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGG-LGAHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHH-HHHHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccc-hHHHHHHHHcCCEEE
Confidence 34678999999999999999999999999543322 1122357899999999999984 5544 456788999999998
Q ss_pred EecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCcc
Q 004348 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (759)
Q Consensus 460 l~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~ 539 (759)
+.+. .+++.+++.|+++++|++.++|+++..|++.........++++||.+++|||++++++.+++.+.+| ++
T Consensus 165 ~~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~ 237 (437)
T 2y27_A 165 PFGG----GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG---ID 237 (437)
T ss_dssp CCCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---SE
T ss_pred eCCC----CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC---cC
Confidence 7654 3899999999999999999999999999875321111112478999999999999999999999887 88
Q ss_pred Eeeeeccccccce-ecccCCCCCCCCCCCcCCCCCCceEEEECC-CCcccCCCceEEEEEecCCCcccccccCChhhHHh
Q 004348 540 ISDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (759)
Q Consensus 540 l~n~YG~TE~~~~-~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~ 617 (759)
++|.||+||+++. +...... .....+.|.+++.++|+|+ +|+++|.|+.|||+|+| .. .+
T Consensus 238 v~~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~--~t------------~~ 299 (437)
T 2y27_A 238 AVDIYGLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTS--LT------------KE 299 (437)
T ss_dssp EEEEEEETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE--SS------------CS
T ss_pred EEecCCchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEec--CC------------cC
Confidence 9999999998543 3322221 1112566778999999995 69999999999999998 21 11
Q ss_pred hhcccCCcEEEeCCeee-------------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEE
Q 004348 618 TYFKPFPGYYFTGDGCS-------------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIY 672 (759)
Q Consensus 618 ~~~~~~~g~y~TGDl~~-------------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lv 672 (759)
.| ..+||+|||+|+ +|++|+|.|||++|.+||+|.+++|++++++..++.++
T Consensus 300 ~~---~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~ 376 (437)
T 2y27_A 300 AL---PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLT 376 (437)
T ss_dssp SS---CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEE
T ss_pred Cc---hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEE
Confidence 11 257999999876 89999999999999999999999999998877788999
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhhcCCCc-cccEEEEe--CCCCCCCCCcccHHH
Q 004348 673 AFVTLVEGVPYSEELRKSLVLAVRKQIGAFA-APDKIHWA--PGLPKTRSGKIMRRI 726 (759)
Q Consensus 673 a~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~-vP~~iv~v--~~lP~T~~GKvdR~~ 726 (759)
++|+++++........++|+++|+++|+.|+ +|..|.++ ++||+|+ ||++|+.
T Consensus 377 a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9999876653222335788999999999984 99998888 5999999 9999964
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=3.9e-29 Score=273.50 Aligned_cols=197 Identities=16% Similarity=0.132 Sum_probs=159.2
Q ss_pred cCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHH---HHHhCCCCCcEEEEecCc-chhchhhHHHHHHhhcCcEEE
Q 004348 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF---KYAFDYKPSDVYWCTADC-GWITGHSYVTYGPMLNGASVV 459 (759)
Q Consensus 384 ~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~---~~~~~l~~~d~~l~~~~l-~~~~g~~~~~~~~L~~G~tlv 459 (759)
..++++++|+|||||||+||||+++|+++. ....+. ...+++.++|++++..|+ .|+.++ ...+.++..|+ ++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~-~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v 164 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIE-ALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MF 164 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHH-HHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHH-HHHHHHHhhHHhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EE
Confidence 467899999999999999999999999954 434322 244678899999999999 887775 45666789999 55
Q ss_pred EecCCCCCCChh-----------------------HHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEE
Q 004348 460 VFEGAPTYPDSG-----------------------RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (759)
Q Consensus 460 l~~~~~~~~d~~-----------------------~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (759)
+... ++|. .++++|+++++|++.++|+++..|++... ....++++||.+++
T Consensus 165 ~~~~----~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~--~~~~~~~~lr~i~~ 238 (369)
T 3hgu_A 165 FSID----IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--VVLQMKQSLAQITL 238 (369)
T ss_dssp ECCC----CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH--HHHHHHHHCSEEEE
T ss_pred ECcc----CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh--hhccccCCeeEEEE
Confidence 5432 3666 78889999999999999999999987632 22245689999999
Q ss_pred eCCCCCHHHHHHHH-HHhCCCCccEeeeeccccccceecccCCCCCCCCCC-CcCCC------CCCceEEEECC-CCccc
Q 004348 517 VGEPINPSAWRWFF-NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPG-SATFP------FFGVQPVIVDE-KGVEI 587 (759)
Q Consensus 517 gGe~l~~~~~~~~~-~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~-~iG~p------~~g~~~~IvD~-~g~~v 587 (759)
|||++++++++++. +.++ +++++|.||+||+++++.. .+. ++|+| +++++++|+|+ +++++
T Consensus 239 gGe~l~~~~~~~~~~~~~p--~~~v~~~YG~TE~~~~~~~--------~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~v 308 (369)
T 3hgu_A 239 GGTELNLDEIKFIASEILP--DCEFSASYGSTSALGVSRS--------LLITSESQQVIYDSFSPFITYDVVDSITAQTV 308 (369)
T ss_dssp ESSCCCHHHHHHHHHHTCT--TSEEEEEEEEGGGTEEEEE--------CCBCTTCSSCEEECCTTTEEEEEECTTTCSBC
T ss_pred CCccCCHHHHHHHHHHhCC--CcEEEcccCchhhhcceec--------cccccCCCcccccCCCCCeEEEEECCCCCcCC
Confidence 99999999999999 8884 4899999999999865531 122 58999 99999999998 99999
Q ss_pred CCCceEEEEEec
Q 004348 588 EGECSGYLCIKS 599 (759)
Q Consensus 588 p~g~~GEL~I~g 599 (759)
|.|+.|||+|++
T Consensus 309 p~G~~GEl~vt~ 320 (369)
T 3hgu_A 309 EYGERGNVIVTH 320 (369)
T ss_dssp CTTCEEEEEEEE
T ss_pred CCCCceEEEEEE
Confidence 999999999998
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.33 E-value=3.6e-12 Score=112.99 Aligned_cols=90 Identities=19% Similarity=0.280 Sum_probs=68.4
Q ss_pred Ceee-ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHH----HHHHHHHHHHhhcCCCccc
Q 004348 631 DGCS-SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEE----LRKSLVLAVRKQIGAFAAP 705 (759)
Q Consensus 631 Dl~~-~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~----l~~~l~~~l~~~Lp~~~vP 705 (759)
|+.. +|++|+|.|||++|.+||+|.+++|++++++..++.+.++|+..++...+.. +.++|++++++.+. +|
T Consensus 5 DmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g---v~ 81 (109)
T 3lax_A 5 DMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL---VT 81 (109)
T ss_dssp SCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS---SC
T ss_pred EEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC---Cc
Confidence 4444 8999999999999999999999999999999889999999999887655433 34455555555543 45
Q ss_pred cEEEEeC--CCCCCCCCcccH
Q 004348 706 DKIHWAP--GLPKTRSGKIMR 724 (759)
Q Consensus 706 ~~iv~v~--~lP~T~~GKvdR 724 (759)
..+++++ +||+| +||++|
T Consensus 82 ~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 82 PRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CEEEEECTTCSCCC----CCC
T ss_pred cceEEEcCCeecCC-CCCcch
Confidence 5566664 79999 799987
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.21 E-value=3.4e-11 Score=106.57 Aligned_cols=92 Identities=18% Similarity=0.285 Sum_probs=70.3
Q ss_pred eCCeee-ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCC-----cHHHHHHHHHHHHhhcCCC
Q 004348 629 TGDGCS-SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPY-----SEELRKSLVLAVRKQIGAF 702 (759)
Q Consensus 629 TGDl~~-~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~-----~~~l~~~l~~~l~~~Lp~~ 702 (759)
+.|+-. +|++|+|.|||++|.+||+|.++++++.+++.+++.++++|++ ++... .+++.++|++++++.+.
T Consensus 3 ~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~-- 79 (109)
T 3gxs_A 3 ADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL-- 79 (109)
T ss_dssp GGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS--
T ss_pred ccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC--
Confidence 445555 9999999999999999999999999888887778999999998 55321 24456777777776653
Q ss_pred ccccEEEEeC--CCCCCCCCcccHH
Q 004348 703 AAPDKIHWAP--GLPKTRSGKIMRR 725 (759)
Q Consensus 703 ~vP~~iv~v~--~lP~T~~GKvdR~ 725 (759)
+|..+.+++ +||+| +||+.|.
T Consensus 80 -~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 -VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp -SCCEEEEECTTCSCCC----CCCE
T ss_pred -CceEEEEECCCCccCC-CCceEEE
Confidence 344788888 89999 9999873
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.77 E-value=0.00035 Score=78.91 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=66.9
Q ss_pred CCC---eeEEEEeCCCCCHHHHHHHHHHhCCCCccEe-eeeccccccceecccCCCCCCCCCCCcCC-CCCCc-eEEEEC
Q 004348 508 RKS---LRVLGSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQKPGSATF-PFFGV-QPVIVD 581 (759)
Q Consensus 508 l~s---Lr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~iG~-p~~g~-~~~IvD 581 (759)
+|. +..++.||- ..-..+++..+| +++++ ..|+.||.- +.+ +.... ..+...+. .+++. -.+.++
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g--~~p~~~~~Y~ASEg~-~gi-~~~p~--~~~~~~~~~L~~~~~ffEFip 366 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCN--DLPLVSTTYGSSETT-FGI-NLDPL--CKPEDVSYTFMPNMSYFEFIP 366 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHT--TCCEECCEEECSSCE-EEE-CSCTT--SCGGGCCEEECTTSSEEEEEE
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcC--CCccccCccccccce-eee-ccCCC--CCcccCceeecCCcEEEEEEe
Confidence 566 555556662 222345556666 47887 899999952 232 22111 11111222 23333 233443
Q ss_pred --CC-------CcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee------------------
Q 004348 582 --EK-------GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------------ 634 (759)
Q Consensus 582 --~~-------g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~------------------ 634 (759)
+. ...|..|+.+||+|+.. . |.| -|++||+++
T Consensus 367 ~~~~~~~~~v~l~eVe~G~~YelViTt~-~----GL~----------------RYr~GD~v~v~~f~~~~p~i~f~gR~~ 425 (581)
T 4eql_A 367 MDGGDKNDVVDLEDVKLGCTYEPVVTNF-A----GLY----------------RMRVGDIVLVTGFYNNAPQFKFVRREN 425 (581)
T ss_dssp CSTTCCSSCEEGGGCCTTCEEEEEEECS-S----SCC----------------SEECCEEEEEEEEETTEEEEEEEEETT
T ss_pred ccccCCCcEeCHHHcCCCceEEEEEeec-c----cee----------------eEEcCCEEEEcccCCCCcEEEEEEecC
Confidence 21 13466899999999982 1 222 188888776
Q ss_pred -----ccEeeCHHHHHHHHhcC
Q 004348 635 -----SGHRIGTAEVESALVSH 651 (759)
Q Consensus 635 -----~G~rI~~~eIE~~L~~~ 651 (759)
.|.+|...+||++|.+-
T Consensus 426 ~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 426 VVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EEECSSSCCEEHHHHHHHHHHC
T ss_pred CEEEeeeeECCHHHHHHHHHHH
Confidence 89999999999999843
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=97.61 E-value=0.0028 Score=71.40 Aligned_cols=142 Identities=12% Similarity=0.046 Sum_probs=78.3
Q ss_pred CCCeeE--EEEeCCCCCHHHHHHHHHHhCCCCccEe-eeeccccccceecccCCCCCCCCCCCcCC-CCCCce-EEEE--
Q 004348 508 RKSLRV--LGSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQKPGSATF-PFFGVQ-PVIV-- 580 (759)
Q Consensus 508 l~sLr~--v~~gGe~l~~~~~~~~~~~~g~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~iG~-p~~g~~-~~Iv-- 580 (759)
+|.|++ ++.+|. + ..-..+++..+| +++++ ..|+.||.- +.+ +.... ..++..+. .+++.. .+.+
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g--~~p~~~~~Y~ASEg~-~gi-~~~p~--~~~~~~~~~L~p~~~ffEFiP~ 372 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAG--DLPLVSHDYGSSEGW-IAA-NVTPR--LSPEEATFAVIPNLGYFEFLPV 372 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHT--TSCEEECCEEETTEE-EEE-CCCTT--SCTTTCCEEECTTSCEEEEEEC
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcC--CCccccCceecccee-eee-ecCCC--CCccccceeecCCcEEEEEEec
Confidence 577763 344552 2 222245556666 47877 899999962 332 22111 11111222 233332 2233
Q ss_pred CCC---------CcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-----------------
Q 004348 581 DEK---------GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS----------------- 634 (759)
Q Consensus 581 D~~---------g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~----------------- 634 (759)
|+. ...|..|+.+||+|+.. . |.| -|++||+++
T Consensus 373 ~~~~~~~~~~v~l~eve~G~~YelviTt~-~----GL~----------------RYr~GD~v~v~g~~~~~p~~~~~gR~ 431 (581)
T 4epl_A 373 SETGEGEEKPVGLTQVKIGEEYEVVITNY-A----GLY----------------RYRLGDVVKVIGFYNNTPQLKFICRR 431 (581)
T ss_dssp -------CCCEEGGGCCTTCEEEEEEEST-T----SCS----------------SEEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccCCCCceeeHHHcCCCCeEEEEEeec-c----cee----------------eEEcCCEEEEecccCCCcEEEEEeec
Confidence 321 13577899999999882 1 222 288888876
Q ss_pred ------ccEeeCHHHHHHHHhc------CC--ccceEEEEeEecCCCCeEEEEEEEEcC
Q 004348 635 ------SGHRIGTAEVESALVS------HP--QCAEAAVVGVEHEVKGQGIYAFVTLVE 679 (759)
Q Consensus 635 ------~G~rI~~~eIE~~L~~------~p--~V~ea~Vv~~~~~~~~~~lva~Vv~~~ 679 (759)
.|.++...+||++|.+ .. .|.|..+.... ......-+.|+.+..
T Consensus 432 ~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~-~~~p~hyv~~wE~~~ 489 (581)
T 4epl_A 432 NLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDV-STDPGHYAIFWEISG 489 (581)
T ss_dssp TCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEEC-SSSSCEEEEEEEESS
T ss_pred CCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCC-CCCCCcEEEEEeecC
Confidence 7999999999999874 22 36666655422 222234555667653
No 41
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.57 E-value=0.0015 Score=73.92 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=24.5
Q ss_pred cCCCCcEEEEeccCCC-CCCcEEEEccch
Q 004348 384 VDAEDPLFLLYTSGST-GKPKGVLHTTGG 411 (759)
Q Consensus 384 ~~~~d~a~IiyTSGST-G~PKgV~~th~~ 411 (759)
..++.+.++.-||||| |+||-|.+|...
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~ 124 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEE 124 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHH
Confidence 3566778999999999 889999999986
No 42
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=93.62 E-value=0.005 Score=69.34 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=52.4
Q ss_pred CCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhh
Q 004348 104 AGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIA 164 (759)
Q Consensus 104 ~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~ 164 (759)
.++|||.+.+.. .++++...++|++++|+++++++++++|..+|++++++|+.+++++.
T Consensus 460 ~~~~~L~l~~~~--~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l~~l~ 518 (520)
T 2jgp_A 460 HAKFDLTFSATE--EREEMTIGVEYSTSLFTRETMERFSRHFLTIAASIVQNPHIRLGEID 518 (520)
T ss_dssp BCSSSEEEEEEE--CSSCEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHCTTCBGGGCC
T ss_pred ceeeeeEEEEEE--CCCeEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHhCccCchhhcC
Confidence 789999888764 45778899999999999999999999999999999999999887653
No 43
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=91.19 E-value=0.02 Score=63.91 Aligned_cols=59 Identities=8% Similarity=-0.161 Sum_probs=43.2
Q ss_pred CCCCcc---hhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhh
Q 004348 103 GAGKIS---RLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIA 164 (759)
Q Consensus 103 ~~~~fd---l~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~ 164 (759)
++++|| |.+.+... ++++...+.|++++| ++++++++++|..+|++++++|+.+++++.
T Consensus 408 ~~~~~~~~~l~l~v~~~--~~~l~~~~~y~~~l~-~~~i~~l~~~~~~~L~~~~~~p~~~l~~l~ 469 (493)
T 4hvm_A 408 GTDTWDGTTTDLSVGEL--GEDMVIVLDQRRTHP-AGGGSALLDGLDAAMAQAVADPSAPLPHST 469 (493)
T ss_dssp CCCCCCCCCEEEEEEEE--TTEEEEEEEECC--------CHHHHHHHHHHHHHHHCTTSBCCC--
T ss_pred cccccCCcceEEEEEEe--CCeEEEEEEEccccC-HHHHHHHHHHHHHHHHHHHhCCCCccccCC
Confidence 346788 87776644 578889999999999 999999999999999999999999988774
No 44
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=88.22 E-value=0.045 Score=60.36 Aligned_cols=55 Identities=5% Similarity=-0.043 Sum_probs=46.9
Q ss_pred CCCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHH
Q 004348 103 GAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGF 159 (759)
Q Consensus 103 ~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~ 159 (759)
..++|||.+.+.. .++++...++|++++|+++++++++++|.++|++++++|+..
T Consensus 406 ~~~~~~l~~~~~~--~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~L~~l~~~~~~~ 460 (466)
T 2xhg_A 406 SEVYTALNITGLI--EGGELVLTFSYSSEQYREESIQQLSQSYQKHLLAIIAHCLQS 460 (466)
T ss_dssp SBCCCSEEEEEEE--ETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceeEEEEEEE--ECCEEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3457888777653 347788999999999999999999999999999999998764
No 45
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=86.43 E-value=0.063 Score=58.53 Aligned_cols=55 Identities=5% Similarity=-0.036 Sum_probs=48.2
Q ss_pred chhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhC---hHHHHHHh
Q 004348 108 SRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVED---PAGFWADI 163 (759)
Q Consensus 108 dl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~---p~~~~~~l 163 (759)
||.+.+... .++++...+.|++++|+++++++++++|..+|++++++ |+.+++++
T Consensus 361 ~l~l~v~~~-~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~l 418 (436)
T 1l5a_A 361 GINFTFRGS-PQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARL 418 (436)
T ss_dssp SEEEEEEEC-TTSCEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHH
T ss_pred ceEEEEEec-CCCcEEEEEEeChhhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHH
Confidence 777776521 24678889999999999999999999999999999999 99999998
No 46
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=84.59 E-value=4.3 Score=43.86 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=75.3
Q ss_pred CCCeEEEEEE-cCCCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--hHHHHHHHHHHHhCCeEEecC
Q 004348 214 LGDKVAIYWE-ANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 288 (759)
Q Consensus 214 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~e~iva~LA~~kaGav~vpld 288 (759)
.++.+|.+.. +...| ..-.+|.+.+...+..+++.+...|+.++|++...++-+ ...+..+++++..|+..++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 4566765543 22222 234689999998888888888889999999999998863 333456788899999988766
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCC
Q 004348 289 AGFSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 289 p~~~~~~l~~il~~~~~~~iit~~~ 313 (759)
+ ...+++...+++.++.+++....
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHH
Confidence 5 57899999999999999987654
No 47
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=84.14 E-value=4.6 Score=43.76 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=75.2
Q ss_pred CCCeEEEE-EEcCCCCc--ceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--hHHHHHHHHHHHhCCeEEecC
Q 004348 214 LGDKVAIY-WEANDPGV--DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 288 (759)
Q Consensus 214 ~pd~~Al~-~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~e~iva~LA~~kaGav~vpld 288 (759)
.++.+|.+ +.+...|. .-.+|.+.+...+..+++.+...|+.++|++...++-+ ...+..+++++..|+..++++
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 45666644 33322232 34689999998888888888889999999999998864 334556788899999988876
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCC
Q 004348 289 AGFSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 289 p~~~~~~l~~il~~~~~~~iit~~~ 313 (759)
+ ...+++...+++.++.+++....
T Consensus 170 ~-~~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 170 G-GQTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred C-CCHHHHHHHHHHhCCcEEEECHH
Confidence 5 48889999999999999987654
No 48
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=82.96 E-value=5 Score=43.32 Aligned_cols=97 Identities=14% Similarity=0.012 Sum_probs=75.4
Q ss_pred CeEEEEEEcC-CCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--hHHHHHHHHHHHhCCeEEecCCC
Q 004348 216 DKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVFAG 290 (759)
Q Consensus 216 d~~Al~~~~~-~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~e~iva~LA~~kaGav~vpldp~ 290 (759)
+.+|.+...+ ..| ..-.+|.+.+...+..+++.+...|+.++|++...++-+ ...+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 6777655432 222 235689999999998888888889999999999998753 4445567888999999888765
Q ss_pred CCHHHHHHHHHhcCCeEEEEeCC
Q 004348 291 FSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 291 ~~~~~l~~il~~~~~~~iit~~~ 313 (759)
...+++...+++.++.+++....
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHH
T ss_pred CCHHHHHHHHHHHCCCEEEECHH
Confidence 47789999999999999987654
No 49
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=68.32 E-value=17 Score=40.56 Aligned_cols=103 Identities=10% Similarity=0.093 Sum_probs=72.4
Q ss_pred CCCcEEEEeccCCCCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecC
Q 004348 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463 (759)
Q Consensus 386 ~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~ 463 (759)
|+.++.+.+..+.++ ..+|.+.+.... +...-...++.++|++...++-+... +..+++.+..|+..+..+.
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~~ 107 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF--FMPVLGALFIGVAVAPAND 107 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT--HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH--HHHHHHHHHcCCEEeecCC
Confidence 556666655444444 357877743221 12222346899999999988877654 4578899999999988864
Q ss_pred CCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHh
Q 004348 464 APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497 (759)
Q Consensus 464 ~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~ 497 (759)
. ...+++..+++..+++++++.+..+..+..
T Consensus 108 ~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 138 (550)
T 3rix_A 108 I---YNERELLNSMNISQPTVVFVSKKGLQKILN 138 (550)
T ss_dssp T---CCHHHHHHHHHHHCCSEEEECGGGHHHHHH
T ss_pred c---CCHHHHHHHHHhcCCeEEEEcHHHHHHHHH
Confidence 3 378999999999999999988876666544
No 50
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=67.63 E-value=16 Score=38.09 Aligned_cols=98 Identities=9% Similarity=0.086 Sum_probs=66.0
Q ss_pred CCCeEEEEEEcC-CCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChH--HHHHHHHHHHhCCeEEecC
Q 004348 214 LGDKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME--LPIAMLACARIGAVHSVVF 288 (759)
Q Consensus 214 ~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e--~iva~LA~~kaGav~vpld 288 (759)
.++.+|.+...+ ..| ..-.+|.+.+...+..+++.+...|+.++|++..++|-+.. -+...++++..|+..++.
T Consensus 89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~- 167 (369)
T 3hgu_A 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI- 167 (369)
T ss_dssp CTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC-
T ss_pred CccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc-
Confidence 355656554322 222 23467899998888877777788899999999999987332 233445558899955553
Q ss_pred CCCCHH-----------------------HHHHHHHhcCCeEEEEeCC
Q 004348 289 AGFSSD-----------------------SLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 289 p~~~~~-----------------------~l~~il~~~~~~~iit~~~ 313 (759)
.+.+. ++...+++.++.+++....
T Consensus 168 -~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps 214 (369)
T 3hgu_A 168 -DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPP 214 (369)
T ss_dssp -CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHH
T ss_pred -cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHH
Confidence 34444 6666889999999887654
No 51
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=65.17 E-value=31 Score=37.76 Aligned_cols=96 Identities=9% Similarity=-0.023 Sum_probs=68.6
Q ss_pred CCCCcEEEEeccCCCCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEec
Q 004348 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~ 462 (759)
.|+.+|++. . +-.+|.+.+.... +...-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 19 ~pd~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl~ 87 (509)
T 3ivr_A 19 FPDRTAFMV-D--------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM--IELIGAVALIGAILLPVN 87 (509)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEE-C--------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHHhCCEEEecC
Confidence 467777654 1 2468888743222 11122235899999999988877654 457889999999999886
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEehHHHHHH
Q 004348 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRS 494 (759)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~ 494 (759)
.. ...+++..++++-++.++.+.+.....
T Consensus 88 ~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 88 YR---LNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TT---SCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CC---CCHHHHHHHHHhcCceEEEECcchhhh
Confidence 43 378999999999999999887765554
No 52
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=62.92 E-value=56 Score=36.08 Aligned_cols=102 Identities=9% Similarity=-0.086 Sum_probs=70.7
Q ss_pred CCCCcEEEEeccCCCCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEec
Q 004348 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~ 462 (759)
.|+.+|++....+ .+..+|.+.+.... +...-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH--LEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHhcCcEEEecC
Confidence 4666776543211 24567887743222 11222346899999999988877654 456788999999999886
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHH
Q 004348 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496 (759)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~ 496 (759)
.. ...+++..++++.++.++.+.+.....+.
T Consensus 104 ~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 104 PR---LSPKEIAYILNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp TT---SCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred cc---cCHHHHHHHHHhCCCcEEEEChhHHHHHH
Confidence 43 37889999999999999998877655443
No 53
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=62.41 E-value=56 Score=36.38 Aligned_cols=103 Identities=11% Similarity=-0.017 Sum_probs=71.4
Q ss_pred CCCCcEEEEeccCCCCCCcEEEEccchHHHHH---HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEe
Q 004348 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~---~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~ 461 (759)
.|+.+|++.... .| ....+|.+.+.... +..+...+++.++|++...++-+... +..+++.+..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW--WLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEec
Confidence 567777765421 12 23568887743222 22222223889999999988877654 45678899999998887
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHH
Q 004348 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496 (759)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~ 496 (759)
+.. ..++++..++++.++.++.+.+.....+.
T Consensus 130 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 130 TIQ---MKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp CTT---CCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred CCC---CCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 643 37889999999999999988877665553
No 54
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=61.76 E-value=83 Score=34.67 Aligned_cols=106 Identities=9% Similarity=-0.111 Sum_probs=72.4
Q ss_pred CCCCcEEEEeccCC-CCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEe
Q 004348 385 DAEDPLFLLYTSGS-TGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (759)
Q Consensus 385 ~~~d~a~IiyTSGS-TG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~ 461 (759)
.|+.+|++....+. .+.. -.+|.+.+.... +...-...++.++|++...++-+... +..+++.+..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEFP--ESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY--VMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCCSSC--SEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCccccccc--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHhCCEEEcc
Confidence 46777876543211 1222 346777633221 12222346899999999988877654 45688999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHh
Q 004348 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497 (759)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~ 497 (759)
+.. ...+++..++++-+++++.+.+.....+..
T Consensus 108 ~~~---~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPM---YKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTT---CCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCC---CCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 643 378999999999999999988876665543
No 55
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=59.88 E-value=81 Score=34.19 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=70.6
Q ss_pred cCCCeEEEEEEcC-CCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHH-HHHHHHHHHhCCeEEecC
Q 004348 213 GLGDKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVF 288 (759)
Q Consensus 213 ~~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~-iva~LA~~kaGav~vpld 288 (759)
..|+.+|++...+ ..| ..-.+|.+.+...+..+. ...++.++|++...+|-.-.+ +..+++.+..|+..+..+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 236 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCK---ESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHH---HHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHH---HhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence 3567777765432 222 245689998887766554 456899999999988865432 334678888999887765
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCC
Q 004348 289 AGFSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 289 p~~~~~~l~~il~~~~~~~iit~~~ 313 (759)
.+.++++...+++.++.++.....
T Consensus 237 -~~~~~~~~~~i~~~~~t~~~~~P~ 260 (501)
T 3ipl_A 237 -KFNAEQILTMIKNERITHISLVPQ 260 (501)
T ss_dssp -SCCHHHHHHHHHHSCCCEEEECHH
T ss_pred -CCCHHHHHHHHHHcCCcEEEchHH
Confidence 578999999999999999987654
No 56
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=58.82 E-value=74 Score=35.08 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=70.6
Q ss_pred cCCCeEEEEEEcC-CCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHH---HHHHHHHhCCeEEe
Q 004348 213 GLGDKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI---AMLACARIGAVHSV 286 (759)
Q Consensus 213 ~~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iv---a~LA~~kaGav~vp 286 (759)
..|+.+|++...+ ..| .+-.+|.+.+...+..++. ..++.++|++...+|....+-. .+++.+..|+..+.
T Consensus 188 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 264 (544)
T 3o83_A 188 TPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264 (544)
T ss_dssp CCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred CCccceEEEEECCCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEE
Confidence 3567777765432 112 2457899998877766554 4589999999999886654433 47888999998777
Q ss_pred cCCCCCHHHHHHHHHhcCCeEEEEeCC
Q 004348 287 VFAGFSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 287 ldp~~~~~~l~~il~~~~~~~iit~~~ 313 (759)
.+ .+.+.++...+++.++.++.....
T Consensus 265 ~~-~~~~~~~~~~i~~~~~t~~~~~P~ 290 (544)
T 3o83_A 265 AP-NPEPLNCFSIIQRHQVNMASLVPS 290 (544)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHH
T ss_pred CC-CCCHHHHHHHHHHHCCCEEEechH
Confidence 64 568888999999999999987654
No 57
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=58.02 E-value=89 Score=34.37 Aligned_cols=97 Identities=13% Similarity=0.026 Sum_probs=70.4
Q ss_pred cCCCeEEEEEEcC-CCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHH--HH-HHHHHHHhCCeEEe
Q 004348 213 GLGDKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL--PI-AMLACARIGAVHSV 286 (759)
Q Consensus 213 ~~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~--iv-a~LA~~kaGav~vp 286 (759)
..|+.+|++...+ ..| .+-.+|.+.+...+..+.. ..++.++|++...+|-+-.+ .. .+++.+..|+..+.
T Consensus 179 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 255 (539)
T 1mdb_A 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255 (539)
T ss_dssp CCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred CCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEE
Confidence 3567777765432 222 2457899988777655543 45789999999988876443 33 57889999998877
Q ss_pred cCCCCCHHHHHHHHHhcCCeEEEEeCC
Q 004348 287 VFAGFSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 287 ldp~~~~~~l~~il~~~~~~~iit~~~ 313 (759)
.+ .+.++++...+++.++.++.....
T Consensus 256 ~~-~~~~~~~~~~i~~~~~t~~~~~P~ 281 (539)
T 1mdb_A 256 SP-SPSPDDAFPLIEREKVTITALVPP 281 (539)
T ss_dssp CS-SSSHHHHHHHHHHHTCSEEEECHH
T ss_pred CC-CCCHHHHHHHHHHcCCeEEEccHH
Confidence 64 578899999999999999987654
No 58
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=54.97 E-value=44 Score=37.00 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=68.8
Q ss_pred CeEEEEEEcC-CCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHH--HHHHHHHHHhCCeEEecCCC
Q 004348 216 DKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL--PIAMLACARIGAVHSVVFAG 290 (759)
Q Consensus 216 d~~Al~~~~~-~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~--iva~LA~~kaGav~vpldp~ 290 (759)
+.+|++...+ ..| .+-.+|.+.+...+......+...++.++|++...+|-.-.+ ...+++.+ .|+..+.++ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 7777765432 222 245699999887766555443336889999998888865433 33467777 999887765 5
Q ss_pred CCHHHHHHHHHhcCCeEEEEeCC
Q 004348 291 FSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 291 ~~~~~l~~il~~~~~~~iit~~~ 313 (759)
+.++.+...+++.++.+++....
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~ 292 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPT 292 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHH
Confidence 78999999999999999987654
No 59
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=54.36 E-value=90 Score=34.11 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=66.8
Q ss_pred CCCeEEEEEEcC-CCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHH--HHHHHHHhCCeEEecC
Q 004348 214 LGDKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI--AMLACARIGAVHSVVF 288 (759)
Q Consensus 214 ~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iv--a~LA~~kaGav~vpld 288 (759)
.|+.+|++...+ ..| .+-.+|.+.+...+..++. ..++.++|++...+|-.-.+-. .+++.+ .|+..+.+
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~- 242 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAS---TIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM- 242 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHH---HSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHH---hcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-
Confidence 456677654422 222 2457899998877766554 4589999999998887654433 245555 88887766
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCC
Q 004348 289 AGFSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 289 p~~~~~~l~~il~~~~~~~iit~~~ 313 (759)
+.+.++++...+++.++.++.....
T Consensus 243 ~~~~~~~~~~~i~~~~~t~~~~~P~ 267 (517)
T 3r44_A 243 PQFDATKVWSLIVEERVCIGGAVPA 267 (517)
T ss_dssp SSCCHHHHHHHHHHTTCCEEEECHH
T ss_pred CCCCHHHHHHHHHHhCCeEEEeHHH
Confidence 5688999999999999999987654
No 60
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=48.67 E-value=72 Score=36.19 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=67.4
Q ss_pred CCCCcEEEEeccCCCCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEec
Q 004348 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~ 462 (759)
.++.+|++.. +..+| .+-.+|.+.+.... +...-...++.++|++...++-+... +..+++.+..|+..+.++
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA--AVAMLACARIGAVHSVIF 163 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHcCcEEEecC
Confidence 3677777643 22222 23567887743222 12222346899999999998887654 457889999999988886
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEehH
Q 004348 463 GAPTYPDSGRSWDIVDKYKVTIFYTAP 489 (759)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vT~l~~~P 489 (759)
.. ..++++..+|++.++.++.+..
T Consensus 164 ~~---~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 164 GG---FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TT---SCHHHHHHHHHHHTCSEEEEES
T ss_pred CC---CCHHHHHHHHHhcCCCEEEEcC
Confidence 53 4789999999999999887753
No 61
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=48.13 E-value=77 Score=36.08 Aligned_cols=98 Identities=12% Similarity=0.036 Sum_probs=68.4
Q ss_pred CCCCcEEEEeccCCCCCCcEEEEccchHHHHH---HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEe
Q 004348 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~---~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~ 461 (759)
.++.+|++... ..+|. +..+|.+.+.... +..+....++.++|++...++.+... +..+++.+..|+..+.+
T Consensus 95 ~pd~~Al~~~~-~~~~~--~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA--IITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEEC-SSTTC--CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEc-CCCCc--eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEee
Confidence 46777776542 22222 3457877743222 22222146889999999999887654 45788999999998888
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEehHH
Q 004348 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPT 490 (759)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps 490 (759)
+.. +.++++..+|++-++.++.+...
T Consensus 170 ~~~---~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FAG---FSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CTT---SCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCC---CCHHHHHHHHHhcCCeEEEEccc
Confidence 653 47899999999999998887543
No 62
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=47.84 E-value=1e+02 Score=33.46 Aligned_cols=99 Identities=9% Similarity=0.006 Sum_probs=67.1
Q ss_pred CCCCcEEEEeccCCCCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEec
Q 004348 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~ 462 (759)
.|+.+|++.. .+ +..+|.+.+.... +...-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 15 ~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~ 85 (504)
T 1t5h_X 15 APDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV--VIAILALHRLGAVPALLN 85 (504)
T ss_dssp CTTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEEC
T ss_pred CCCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHHhCcEEEecC
Confidence 4666776542 11 2467887743222 11122236889999999988877654 456889999999999886
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEe--hHHHHHHH
Q 004348 463 GAPTYPDSGRSWDIVDKYKVTIFYT--APTLVRSL 495 (759)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vT~l~~--~Ps~l~~l 495 (759)
.. ..++++..++++.+++.+.+ .+.....+
T Consensus 86 ~~---~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 86 PR---LKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TT---SCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred Cc---cChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 53 37889999999999998887 65554444
No 63
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=46.46 E-value=72 Score=34.76 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCCeEEEEEEcC-CCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHH-HHHHHHHHHhCCeEEecCC
Q 004348 214 LGDKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVFA 289 (759)
Q Consensus 214 ~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~-iva~LA~~kaGav~vpldp 289 (759)
.++.+|++...+ ..| ..-.+|.+.+...+..++ ...++.++|++..++|-+..+ +..+++.+..|+..+.+++
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 456677654422 222 245689998877665544 456899999999999876433 3457888999998887765
Q ss_pred C--CCHHHHHHHHHhcCCeEEEEeCC
Q 004348 290 G--FSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 290 ~--~~~~~l~~il~~~~~~~iit~~~ 313 (759)
. ..++.+...+++.++.++.....
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~ 244 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPS 244 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHH
Confidence 3 56788999999999999887643
No 64
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=46.20 E-value=1.3e+02 Score=32.02 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=72.4
Q ss_pred CCCCcEEEEecc--CCCCCCcEEEEccchHHHHHHHHHHH---HhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEE
Q 004348 385 DAEDPLFLLYTS--GSTGKPKGVLHTTGGYMVHTATTFKY---AFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459 (759)
Q Consensus 385 ~~~d~a~IiyTS--GSTG~PKgV~~th~~~l~~~~~~~~~---~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlv 459 (759)
.|+.+|++.... +.+| ....+|.+.+. .....+.. ..+. ++|++...++-+... +..+++.+..|+..+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~-~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~v 110 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLY-RRTLNVAQELSRCGS-TGDRVVISAPQGLEY--VVAFLGALQAGRIAV 110 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHH-HHHHHHHHHHTTSSC-TTCEEEEECCSSHHH--HHHHHHHHHTTCEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHH-HHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH--HHHHHHHHHhCcEEE
Confidence 577788766542 2223 33568888743 32222222 2354 899999888877654 456889999999998
Q ss_pred EecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhc
Q 004348 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (759)
Q Consensus 460 l~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~ 498 (759)
..+........+++..++++.++.++.+.+.....+...
T Consensus 111 pl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 111 PLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp EECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred eeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 886421112567899999999999999988777666544
No 65
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=44.33 E-value=1e+02 Score=34.26 Aligned_cols=97 Identities=13% Similarity=0.039 Sum_probs=68.3
Q ss_pred cCCCCcEEEEeccCCCCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEe
Q 004348 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (759)
Q Consensus 384 ~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~ 461 (759)
..|+.+|++.... .| ....+|.+.+.... +...-...+++++|++...++-+... +..+++.+..|+..+..
T Consensus 68 ~~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~--~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 68 DSPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF--WYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp HCTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH--HHHHHHHHHHTCEEEEC
T ss_pred hCCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHhCCEEEEeC
Confidence 3578888876532 12 24567877743221 22222346899999999988877654 45688899999998887
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEehH
Q 004348 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAP 489 (759)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vT~l~~~P 489 (759)
+.. ..++++..++++-++.++.+.+
T Consensus 142 ~~~---~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 142 THM---LKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp CTT---CCHHHHHHHHHHHTCCEEEEES
T ss_pred Ccc---CCHHHHHHHHHhcCCCEEEEec
Confidence 643 4789999999999999888744
No 66
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=44.03 E-value=88 Score=26.13 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=39.4
Q ss_pred CHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcH--HHHHHHHHHHHhhcCC
Q 004348 640 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE--ELRKSLVLAVRKQIGA 701 (759)
Q Consensus 640 ~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~--~l~~~l~~~l~~~Lp~ 701 (759)
...+|++.|.++|+|.++-=+-.......-.+-+-|+..+..+..+ ++.+++.+.|++++|.
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~ 74 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDD 74 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3467899999999998875443433222234556677765543222 4567888888888774
No 67
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=42.73 E-value=79 Score=34.73 Aligned_cols=98 Identities=10% Similarity=0.055 Sum_probs=67.9
Q ss_pred CCCCcEEEEeccCCCCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEec
Q 004348 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~ 462 (759)
.|+.+|++. +.+| -.+|.+.+.... +...-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 35 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 35 HSSKPCLIN---GANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF--VLAFLGASHRGAIITAAN 105 (536)
T ss_dssp STTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCEEeccC
Confidence 467777654 2223 347877743222 11222346899999999988877654 457889999999988886
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEehHHHHHH
Q 004348 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRS 494 (759)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~ 494 (759)
.. ..++++..++++.++.++.+.+.....
T Consensus 106 ~~---~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 106 PF---STPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TT---CCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CC---CCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 43 478999999999999998887654433
No 68
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=42.71 E-value=1e+02 Score=34.12 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=67.7
Q ss_pred CCCCcEEEEeccCCCCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEec
Q 004348 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~ 462 (759)
.|+.+|++. . +-.+|.+.+.... +...-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~ 120 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL--FIGILAVLKAGGAYVPID 120 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEEeC
Confidence 467777653 1 1357877743222 11122235899999999888877654 456889999999998886
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEehHHHHHHH
Q 004348 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495 (759)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l 495 (759)
.. ..++++..++++.++.++.+.+.....+
T Consensus 121 ~~---~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 121 IE---YPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TT---SCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CC---CcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 43 3788999999999999998877654443
No 69
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=42.03 E-value=90 Score=34.62 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=70.3
Q ss_pred cCCCeEEEEEEcC-CCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHH--HHHHHHHhCCeEEec
Q 004348 213 GLGDKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI--AMLACARIGAVHSVV 287 (759)
Q Consensus 213 ~~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iv--a~LA~~kaGav~vpl 287 (759)
..|+.+|++...+ ..| .+-.+|.+.+...+..++. ..++.++|++..++|-.-.+-. .+++.+..|+..+.+
T Consensus 164 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~ 240 (590)
T 3kxw_A 164 IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240 (590)
T ss_dssp CCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence 4567777765532 222 2457999999887766544 5689999999999987765433 478889999988877
Q ss_pred CCCC---CHHHHHHHHHhcCCeEEEEeC
Q 004348 288 FAGF---SSDSLAQRIMDCKPKVVITSN 312 (759)
Q Consensus 288 dp~~---~~~~l~~il~~~~~~~iit~~ 312 (759)
.+.. .++.+...+++.++.++.+..
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p 268 (590)
T 3kxw_A 241 SPFSFLQNPLSWLKHITKYKATISGSPN 268 (590)
T ss_dssp CHHHHHHCTHHHHHHHHHHTCSEEEECT
T ss_pred CHHHHHHCHHHHHHHHHHhCCeeecCCh
Confidence 5532 567888899999999887644
No 70
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=42.03 E-value=1.2e+02 Score=33.10 Aligned_cols=97 Identities=12% Similarity=0.163 Sum_probs=68.9
Q ss_pred CCCeEEEEEE-cCCCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHH-HHHHHHHHHhCCeEEecCC
Q 004348 214 LGDKVAIYWE-ANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVFA 289 (759)
Q Consensus 214 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~-iva~LA~~kaGav~vpldp 289 (759)
.++.+|++.. +...| ..-.+|.+.+...+..++ ...++.++|++...+|-+..+ +..+++++..|+..+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHH---HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 4566666543 32223 245689998877665544 456889999999998876443 3457888999998877654
Q ss_pred C--CCHHHHHHHHHhcCCeEEEEeCC
Q 004348 290 G--FSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 290 ~--~~~~~l~~il~~~~~~~iit~~~ 313 (759)
. ..++.+...+++.++.+++....
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~ 243 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPS 243 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHH
Confidence 3 56788899999999999887654
No 71
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=41.64 E-value=2.4e+02 Score=31.36 Aligned_cols=96 Identities=13% Similarity=0.018 Sum_probs=68.8
Q ss_pred CCCeEEEEEEcC-CCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHH--HH-HHHHHHHhCCeEEec
Q 004348 214 LGDKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL--PI-AMLACARIGAVHSVV 287 (759)
Q Consensus 214 ~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~--iv-a~LA~~kaGav~vpl 287 (759)
.|+.+|.+...+ ..| .+-.+|.+.+...+..... ..++.++|++...+|-+..+ .+ .+++++..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE---ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHH---hcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 457777665422 222 2457899988777665544 44789999999998855443 33 478888999987776
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEeCC
Q 004348 288 FAGFSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 288 dp~~~~~~l~~il~~~~~~~iit~~~ 313 (759)
+ ......+...+++.++.++.....
T Consensus 259 ~-~~~~~~~~~~i~~~~~t~~~~~P~ 283 (617)
T 3rg2_A 259 A-DPSATLCFPLIEKHQVNVTALVPP 283 (617)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHH
T ss_pred C-CCCHHHHHHHHHHhCCcEEEcchH
Confidence 5 467888889999999999987654
No 72
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=38.26 E-value=90 Score=34.12 Aligned_cols=97 Identities=10% Similarity=0.021 Sum_probs=66.6
Q ss_pred CCCCcEEEEeccCCCCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEec
Q 004348 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~ 462 (759)
.|+.+|++.. | ..+|.+.+.... ....-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~ 104 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL--PVAFLGALYAGVVPVVAN 104 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH--HHHHHHHHHHTCEEEECC
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHcCceEEecC
Confidence 4566666531 1 247877643222 11222346899999999988877654 456788999999988876
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEehHHHHHHH
Q 004348 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495 (759)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l 495 (759)
.. ..++++..++++-++.++.+.+.....+
T Consensus 105 ~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 105 TL---LTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp TT---CCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred cc---cCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 43 3788999999999999988876654433
No 73
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=35.78 E-value=91 Score=28.74 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCccceEEEEeEecCCCCe--EEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCC
Q 004348 641 TAEVESALVSHPQCAEAAVVGVEHEVKGQ--GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPG 713 (759)
Q Consensus 641 ~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~--~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~ 713 (759)
-+|+++.|.++++|..|-|...-.....+ ..-.++.++++...+... ..|+..+...+|. +-|..|.+++.
T Consensus 92 egELartI~~i~~V~~ARVhl~lP~~~~~~~sASV~l~~~~g~~l~~~q-~~I~~LVa~SV~g-L~~enVtVvdq 164 (171)
T 1yj7_A 92 EQDIERLLSKIPGVIDCSVSLNVNNNESQPSSAAVLVISSPEVNLAPSV-IQIKNLVKNSVDD-LKLENISVVIK 164 (171)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEC-------CEEEEEEEECTTCCCGGGH-HHHHHHHHHHSTT-CCGGGEEEEEE
T ss_pred HHHHHHHHHcCCCeeEEEEEEECCCCCCCCceEEEEEEeCCCCCCcHhH-HHHHHHHHHhcCC-CCcccEEEEeC
Confidence 57899999999999999986552222222 233455566676555443 4699999999885 45777777653
No 74
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=35.50 E-value=4 Score=43.60 Aligned_cols=49 Identities=2% Similarity=-0.307 Sum_probs=38.2
Q ss_pred CCCcchhhh-hhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHH
Q 004348 104 AGKISRLNA-VILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGF 159 (759)
Q Consensus 104 ~~~fdl~~~-~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~ 159 (759)
..+|||.+. +. +.++++...+ |+++ +++++++++|.++|++++++|+..
T Consensus 371 ~~~~~l~~~~~~--~~~~~l~~~~-y~~~----~~~~~l~~~~~~~L~~l~~~~~~~ 420 (422)
T 1q9j_A 371 SISVPLDLYSCA--VYAGQLIIEH-HGHI----AEPGKSLEAIRSLLCTVPSEYGWI 420 (422)
T ss_dssp BSSCCCCEEEEE--EETTEEEEEE-ESSC----SSHHHHHHHHHHHHHHTTTSCC--
T ss_pred CCCCCceEEEEE--eeCCeEEEEE-ecCc----cchHHHHHHHHHHHHHhhcCcccc
Confidence 467888766 33 2346788899 9987 788999999999999999998764
No 75
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=34.67 E-value=2e+02 Score=31.20 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=67.1
Q ss_pred cCCCeEEEEEE-cCCCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChH--HHHHHHHHHHhCCeEEec
Q 004348 213 GLGDKVAIYWE-ANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME--LPIAMLACARIGAVHSVV 287 (759)
Q Consensus 213 ~~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e--~iva~LA~~kaGav~vpl 287 (759)
..|+.+|++.. +...| .+-.+|.+.+...+..++..+ ++.++|++...+|-.-- ++..+++.+..|+..+.+
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 228 (505)
T 3nyq_A 152 ADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL 228 (505)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 35666776544 32222 245789999988877666544 78899998888876433 344578999999988776
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEeCC
Q 004348 288 FAGFSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 288 dp~~~~~~l~~il~~~~~~~iit~~~ 313 (759)
+.+..+.+...+ +.++.+++....
T Consensus 229 -~~~~~~~~~~~i-~~~~t~~~~~P~ 252 (505)
T 3nyq_A 229 -GRFSTEGAAREL-NDGATMLFGVPT 252 (505)
T ss_dssp -SSCCHHHHHHHH-TTTCCEEEECHH
T ss_pred -CCCChHHHHHHH-hhCCeEEEehHH
Confidence 457777777777 678888887654
No 76
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=34.14 E-value=3.9e+02 Score=27.10 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=43.5
Q ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCC-------CCHHHHHHHHHhcCCeEEEEeCCcccCCccc
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG-------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~-------~~~~~l~~il~~~~~~~iit~~~~~~~~~~~ 321 (759)
+++||.|.+..+.-..+ ..++...|+..+.++.. ...+.++..+++.++++|+........+...
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~ 177 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAW 177 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCC
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCccc
Confidence 57899887766554443 33556788866665542 6789999999867888887766544444443
No 77
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=34.14 E-value=1.8e+02 Score=30.86 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=47.7
Q ss_pred CCCCCEEEEEcCCChHHHHHHH-HHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHH
Q 004348 254 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 327 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~L-A~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v 327 (759)
+++||.|.+.-+.-....-.+- .+.+.|+.++.++.+ ..+.++..++. +.++|+.+......+...+++.+.
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i~ 190 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLETISNPQLQVADLEALS 190 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHH
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHHH
Confidence 6899998666554444433332 566789888887766 66777777654 678888876665556666655443
No 78
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=31.82 E-value=3.3e+02 Score=27.41 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=45.9
Q ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecC--C----CCCHHHHHHHHHh----cCCeEEEEeCCcccCCcccch
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--A----GFSSDSLAQRIMD----CKPKVVITSNAVKRGPKAIHL 323 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpld--p----~~~~~~l~~il~~----~~~~~iit~~~~~~~~~~~~~ 323 (759)
+++||.|.+..+.-....-+ +...|+..+.++ . ....+.++..+++ .++++|+........+...++
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~ 166 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDV 166 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCH
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCH
Confidence 56899988776665554443 567788666555 2 2367888888875 367788877665555666665
Q ss_pred HHH
Q 004348 324 KDI 326 (759)
Q Consensus 324 ~~~ 326 (759)
+.+
T Consensus 167 ~~i 169 (371)
T 2e7j_A 167 KKI 169 (371)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 79
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=31.00 E-value=1.7e+02 Score=29.96 Aligned_cols=66 Identities=12% Similarity=-0.033 Sum_probs=44.9
Q ss_pred HHHHHcCC-CCCCEEEEEcCCChHHHHHHHHHHHhCCeEE-ecCCCCCHHHHHHHHHhcCCeEEEEeCC
Q 004348 247 NYLKDIGV-KKGDAVIIYLPMLMELPIAMLACARIGAVHS-VVFAGFSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 247 ~~L~~~Gv-~~gd~Vai~~~~s~e~iva~LA~~kaGav~v-pldp~~~~~~l~~il~~~~~~~iit~~~ 313 (759)
..+.+.|. ++|+.|.+....+=.-....+++.+.|.-++ .++.+.+.. -..+++..+++++++...
T Consensus 60 ~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~-k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 60 DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLE-RRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHH-HHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHH-HHHHHHHCCCEEEEECCC
Confidence 34455664 8898865555666677777778888898443 444445554 456778999999998653
No 80
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=30.34 E-value=84 Score=24.64 Aligned_cols=47 Identities=26% Similarity=0.177 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcC
Q 004348 641 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 700 (759)
Q Consensus 641 ~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp 700 (759)
..++++.|.++|.|.+|..+.- ...+.+.|..++ .+++.+.+.+++.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG-----~~D~ll~v~~~d--------~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYG-----EYDLIVKVETDT--------LKDLDQFITEKIR 61 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBS-----SCSEEEEEEESS--------HHHHHHHHHTTGG
T ss_pred HHHHHHHHhCCCCeeEEEEEcc-----cCCEEEEEEECC--------HHHHHHHHHHHhc
Confidence 4789999999999999988732 222555555432 4556666665543
No 81
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=30.01 E-value=1.6e+02 Score=23.46 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=38.6
Q ss_pred CHHHHHHHHhcC--CccceEEEEeEecCCCCeEEEEEEEEcCCCCCc--HHHHHHHHHHHHhhcCC
Q 004348 640 GTAEVESALVSH--PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS--EELRKSLVLAVRKQIGA 701 (759)
Q Consensus 640 ~~~eIE~~L~~~--p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~--~~l~~~l~~~l~~~Lp~ 701 (759)
...+|++.+.++ |+|.++-=+-...-.....+-+-|+..+..+.. .++.+++.+.|++++|.
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~ 76 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG 76 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCC
Confidence 356788999999 999887544333222223445667765543322 34567788888888774
No 82
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=29.96 E-value=2.4e+02 Score=28.55 Aligned_cols=72 Identities=13% Similarity=-0.001 Sum_probs=44.6
Q ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecC--CC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--AG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpld--p~--~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (759)
.++||.|.+..+...-+.-.+.++...|+..+.++ ++ ...+.++..++. ++++|+........+...+++++
T Consensus 86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i 161 (384)
T 1eg5_A 86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTIQPVEDV 161 (384)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHH
T ss_pred cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEECCCCCcccccCHHHH
Confidence 46899887766655554444444566788655554 33 456778777754 67888776655445666665443
No 83
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=29.72 E-value=1.5e+02 Score=32.21 Aligned_cols=81 Identities=7% Similarity=-0.036 Sum_probs=59.2
Q ss_pred EEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCc
Q 004348 406 LHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483 (759)
Q Consensus 406 ~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT 483 (759)
.+|.+.+.... ....-...++.++|++...++-+... +..+++.+..|+..+..+.. ...+++..++++.++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl~~~---~~~~~l~~il~~~~~~ 102 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA--LVLYLATVRAGGVYLPLNTA---YTLHELDYFITDAEPK 102 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEECCTT---CCHHHHHHHHHHHCCS
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHcCcEEEecCCC---CCHHHHHHHHHhcCCc
Confidence 47777743222 11222345899999999988877654 45788999999998888643 3789999999999999
Q ss_pred EEEehHHH
Q 004348 484 IFYTAPTL 491 (759)
Q Consensus 484 ~l~~~Ps~ 491 (759)
++.+.+..
T Consensus 103 ~vi~~~~~ 110 (503)
T 4fuq_A 103 IVVCDPSK 110 (503)
T ss_dssp EEEECGGG
T ss_pred EEEECchh
Confidence 98887643
No 84
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=29.37 E-value=4.4e+02 Score=26.91 Aligned_cols=70 Identities=7% Similarity=0.006 Sum_probs=48.2
Q ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhc---CCeEEEEeCCcccCCcccchHHHH
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC---KPKVVITSNAVKRGPKAIHLKDIV 327 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~---~~~~iit~~~~~~~~~~~~~~~~v 327 (759)
+++||.|.+..+....+. -++...|+..++++. ...+.++..++.. ++++|++.......+...+++.+.
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~ 196 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELT 196 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHH
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHH
Confidence 578999888877655443 345567887777754 5678899998875 678888876655445555554443
No 85
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=29.28 E-value=1.5e+02 Score=30.50 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=51.8
Q ss_pred ceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHH-HHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEE
Q 004348 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308 (759)
Q Consensus 230 ~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~-iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~i 308 (759)
.-.+|.+.|...+..++ ...+++++|++...+|-.-.+ +..++..+..|+..+.+++.... ...+++.++.++
T Consensus 54 gV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~ 127 (358)
T 4gs5_A 54 PITVTRAQLAASAAMTG---KALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP---LAGLDHADFDFV 127 (358)
T ss_dssp EEEEEHHHHHHHHHHHH---HHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEE
T ss_pred EEEEeHHHHHHHHHHHH---HHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH---HHHHHHhCCeEE
Confidence 45799999887765554 346899999999988866432 33455667788877766654332 344666777777
Q ss_pred EEeC
Q 004348 309 ITSN 312 (759)
Q Consensus 309 it~~ 312 (759)
....
T Consensus 128 ~~~P 131 (358)
T 4gs5_A 128 AMVP 131 (358)
T ss_dssp EECH
T ss_pred EcCh
Confidence 6543
No 86
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=27.21 E-value=3e+02 Score=28.26 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=46.5
Q ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHhCCeE--EecCCC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHH
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVH--SVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 327 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA~~kaGav~--vpldp~--~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v 327 (759)
+++||.|.+..+...... ..-++...|+.. ++++++ ...+.++..++..++++|+.+......+...+++.+.
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~ 159 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIG 159 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHH
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHH
Confidence 689999888776533311 222455668744 455443 3678899998866778888776555555666655543
No 87
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=27.02 E-value=2.8e+02 Score=28.67 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=48.7
Q ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHH
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 327 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v 327 (759)
+++||.|.+--+..... .-++...|+..++++. ...+.++..+++.++++|+++.-....+...+++.+.
T Consensus 140 ~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~ 209 (409)
T 3kki_A 140 CQPNTNVYIDFFAHMSL---WEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELV 209 (409)
T ss_dssp CCTTCEEEEETTSCHHH---HHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHH
T ss_pred cCCCCEEEECCCcCHHH---HHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHH
Confidence 57899988765554433 3456667888887754 5688999999887788888886655555666655443
No 88
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=26.63 E-value=5.4e+02 Score=26.39 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=46.4
Q ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCC-----CCCHHHHHHHHHhc---CCe-EEEEeCC-cccCCcccch
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA-----GFSSDSLAQRIMDC---KPK-VVITSNA-VKRGPKAIHL 323 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp-----~~~~~~l~~il~~~---~~~-~iit~~~-~~~~~~~~~~ 323 (759)
+++||.|.+..|.-..+. -++...|+..++++. ....+.++..+++. +.+ +++.+.. ....+...+.
T Consensus 122 ~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~ 198 (413)
T 3t18_A 122 LDEGDPLICHDYYWAPYR---KICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSD 198 (413)
T ss_dssp CCSSCEEEEESSCCTHHH---HHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCH
T ss_pred cCCCCEEEECCCCcccHH---HHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCH
Confidence 578999988877655443 334567876555543 45678888888764 666 6666544 3444555554
Q ss_pred HHHHHHHHHH
Q 004348 324 KDIVDAALDE 333 (759)
Q Consensus 324 ~~~v~~~~~~ 333 (759)
.. +.+..+.
T Consensus 199 ~~-l~~l~~~ 207 (413)
T 3t18_A 199 EE-WDEVITF 207 (413)
T ss_dssp HH-HHHHHHH
T ss_pred HH-HHHHHHH
Confidence 44 3444443
No 89
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=25.80 E-value=1e+02 Score=23.81 Aligned_cols=47 Identities=28% Similarity=0.080 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcC
Q 004348 641 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 700 (759)
Q Consensus 641 ~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp 700 (759)
..++++.|.++|.|.+|..+. ++.-+.+.|... + .+++.+.+.++|.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt-----G~~d~l~~v~~~-----d---~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVY-----GVYDIVVKVEAD-----S---MDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECS-----SSCSEEEEEECS-----S---HHHHHHHHHHTGG
T ss_pred HHHHHHHHhCCCCeEEEEEEe-----ccCCEEEEEEEC-----C---HHHHHHHHHHHhc
Confidence 368999999999999998873 222255555432 1 4556666655554
No 90
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=25.69 E-value=2e+02 Score=31.76 Aligned_cols=92 Identities=9% Similarity=0.027 Sum_probs=64.7
Q ss_pred CCCCcEEEEeccCCCCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEec
Q 004348 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~ 462 (759)
.|+.+|++. . +-.+|.+.+.... +...-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~ 156 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM--VVALLAVLKAGGGYTMLD 156 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHHCCEEEEcC
Confidence 466677653 1 1247877643222 11222346899999999988877654 457889999999998886
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEehHH
Q 004348 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPT 490 (759)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vT~l~~~Ps 490 (759)
.. ...+++..++++.++.++.+...
T Consensus 157 ~~---~~~~~l~~~l~~~~~~~~i~~~~ 181 (570)
T 4gr5_A 157 PQ---FPVERLALSLEDTGAPLLVTSRP 181 (570)
T ss_dssp TT---SCHHHHHHHHHHHTCSEEEECTT
T ss_pred CC---ChHHHHHHHHHhcCCCEEEecch
Confidence 43 37899999999999998887654
No 91
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=24.64 E-value=2.7e+02 Score=25.50 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCccceEEEEeE-ecC-C----CCeEE--EEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEE
Q 004348 641 TAEVESALVSHPQCAEAAVVGV-EHE-V----KGQGI--YAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 709 (759)
Q Consensus 641 ~~eIE~~L~~~p~V~ea~Vv~~-~~~-~----~~~~l--va~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv 709 (759)
-+|+++.|.++++|..|-|... |.. . ..+.. -.++.++++. .+++..+.|+..+...+|.. -|..|.
T Consensus 90 e~ELartI~~i~gV~~ArVhl~lP~~~~~f~~~~~~~sASV~l~~~~g~-l~~~qv~~I~~LVa~SV~gL-~~e~Vt 164 (170)
T 2y9j_Y 90 EQRLEQSLQTMEGVLSARVHISYDIDAGENGRPPKPVHLSALAVYERGS-PLAHQISDIKRFLKNSFADV-DYDNIS 164 (170)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEECCCCCBTTBCCCCEEEEEEEEECTTC-CCGGGHHHHHHHHHHHSTTC-CGGGEE
T ss_pred HHHHHHHHHcCCCeeEEEEEEEcCCCcCcccccCCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHhcCCC-CccceE
Confidence 4689999999999999988655 332 1 11223 3455566665 44556789999999998854 355443
No 92
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=24.54 E-value=1.5e+02 Score=30.67 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=40.5
Q ss_pred HHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecC--C---CCCHHHHHHHHHhcC--CeEEEEe
Q 004348 248 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--A---GFSSDSLAQRIMDCK--PKVVITS 311 (759)
Q Consensus 248 ~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpld--p---~~~~~~l~~il~~~~--~~~iit~ 311 (759)
.|..+++++||.|.+-.+.-..+ .-++...|+.++.++ + ....+.++..+...+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 45556789999988776655543 335667898655544 3 246788888774444 7777743
No 93
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=24.43 E-value=3.7e+02 Score=28.18 Aligned_cols=76 Identities=9% Similarity=0.091 Sum_probs=47.8
Q ss_pred HHHHcCCCCCCEEEEEcCCChHHHHHHH-HHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 004348 248 YLKDIGVKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (759)
Q Consensus 248 ~L~~~Gv~~gd~Vai~~~~s~e~iva~L-A~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (759)
.|+.+ +++||.|.+..+.-......+- .+.+.|+-++.++.. ..+.++..++. +.++|+.+......+...+++.+
T Consensus 112 al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i 188 (414)
T 3ndn_A 112 SLGAL-LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAV 188 (414)
T ss_dssp HHHTT-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHH
T ss_pred HHHHH-hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHH
Confidence 34444 7899998776665444433322 234578877777665 66777777754 67888877666555666665543
No 94
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=24.29 E-value=2.4e+02 Score=28.75 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=45.4
Q ss_pred HHHcCCCCCCEEEEEcCCChHHHHHHHH-HHHhCCeEEecCCC------CCHHHHHHHHHhcCCeEEEEeCCcccCCccc
Q 004348 249 LKDIGVKKGDAVIIYLPMLMELPIAMLA-CARIGAVHSVVFAG------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321 (759)
Q Consensus 249 L~~~Gv~~gd~Vai~~~~s~e~iva~LA-~~kaGav~vpldp~------~~~~~l~~il~~~~~~~iit~~~~~~~~~~~ 321 (759)
++...+++||.|.+..+.-....-.+.. +...|+..+.++.. ...+.++..++. ++++|+........+...
T Consensus 93 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~ 171 (390)
T 1elu_A 93 LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQVL 171 (390)
T ss_dssp HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCBC
T ss_pred HhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEeccccCCceec
Confidence 3444467899998887766665544433 34568755555432 334566555543 567777766555555566
Q ss_pred chHHH
Q 004348 322 HLKDI 326 (759)
Q Consensus 322 ~~~~~ 326 (759)
+++++
T Consensus 172 ~~~~i 176 (390)
T 1elu_A 172 PLAEI 176 (390)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 64443
No 95
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=24.17 E-value=4.6e+02 Score=24.75 Aligned_cols=81 Identities=19% Similarity=0.052 Sum_probs=47.0
Q ss_pred chhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEe------hHHH--HHHHHhcCCcccccCCC-C
Q 004348 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYT------APTL--VRSLMRDGNEYVTRYSR-K 509 (759)
Q Consensus 439 ~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~------~Ps~--l~~l~~~~~~~~~~~~l-~ 509 (759)
.|+.|..+.-..--.+|-.++..... .+++.+.+.+.++++.++.+ ++++ +..+.+... ...+ .
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~---vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~----~~~~~~ 176 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVD---VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLN----EEKLRD 176 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSS---CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHH----HTTCGG
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCC---CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHH----HcCCCC
Confidence 47776433222223577777665332 37899999999999997666 3332 222222211 1111 1
Q ss_pred CeeEEEEeCCCCCHHHHH
Q 004348 510 SLRVLGSVGEPINPSAWR 527 (759)
Q Consensus 510 sLr~v~~gGe~l~~~~~~ 527 (759)
.++ +++||.+++++.++
T Consensus 177 ~v~-v~vGG~~~~~~~a~ 193 (215)
T 3ezx_A 177 SVK-CMFGGAPVSDKWIE 193 (215)
T ss_dssp GSE-EEEESSSCCHHHHH
T ss_pred CCE-EEEECCCCCHHHHH
Confidence 333 78899999987544
No 96
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=24.09 E-value=4.5e+02 Score=26.44 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=43.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCC---C--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHH
Q 004348 255 KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA---G--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 327 (759)
Q Consensus 255 ~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp---~--~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v 327 (759)
++||.|.+.-+......+ .-++.+.|+..+.++. + ...+.++..++..++++|+........+...+++.+.
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~ 160 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAIS 160 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHH
T ss_pred CCCCeEEEEcCCcchHHH-HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHH
Confidence 789988776443332221 2344567876555443 3 4678888888765678887766554445556655443
No 97
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=23.76 E-value=2.5e+02 Score=33.41 Aligned_cols=97 Identities=13% Similarity=0.012 Sum_probs=67.9
Q ss_pred cCCCCcEEEEeccCCCCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEe
Q 004348 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (759)
Q Consensus 384 ~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~ 461 (759)
..|+.+|++. +.+| -.+|.+.+.... +...-...++.++|++...++-+... +..+++.+..|+..+..
T Consensus 73 ~~pd~~Al~~---~~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~--~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 73 EFATKPCLIN---GPTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEF--VLSFLAASFRGATATAA 143 (979)
T ss_dssp GTTTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHH--HHHHHHHHHHTCEEEEE
T ss_pred hCCCCeEEEE---CCCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHH--HHHHHHHHHcCCEEEee
Confidence 3477788764 2223 357777633221 11222346899999999988877654 45788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEehHHHH
Q 004348 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLV 492 (759)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l 492 (759)
+.. ..++++..++++.++.++.+.+...
T Consensus 144 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 144 NPF---FTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp CTT---SCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCC---CCHHHHHHHHHHcCCeEEEEChHHH
Confidence 643 4789999999999999988876543
No 98
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=23.40 E-value=3.1e+02 Score=27.90 Aligned_cols=72 Identities=11% Similarity=-0.004 Sum_probs=42.9
Q ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHhCCe--EEecCCC--CCHHHHHHHHHh-cCCeEEEEeCCcccCCcccchHHH
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLACARIGAV--HSVVFAG--FSSDSLAQRIMD-CKPKVVITSNAVKRGPKAIHLKDI 326 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA~~kaGav--~vpldp~--~~~~~l~~il~~-~~~~~iit~~~~~~~~~~~~~~~~ 326 (759)
+++||.|.+..+...-.. ..-.+.+.|+. +++++++ ...+.++..+++ .++++|+........+...+++.+
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i 156 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAI 156 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHH
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHH
Confidence 578998877765443332 11122346764 4555543 568889888875 467888876655444555555443
No 99
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=23.27 E-value=1e+02 Score=30.73 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCC
Q 004348 243 CQLANYLKDIGVKKGDAVIIYLPML 267 (759)
Q Consensus 243 ~~lA~~L~~~Gv~~gd~Vai~~~~s 267 (759)
..|+..|+++||++||.|.|...-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 5677889999999999999998653
No 100
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=23.27 E-value=2.7e+02 Score=28.65 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=44.2
Q ss_pred CCCCCEEEEEcCCChHHHHHHHH-HHHhCCeEE--ecCCC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLA-CARIGAVHS--VVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA-~~kaGav~v--pldp~--~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (759)
+++||.|.+..+.-......+.. +...|+..+ +++.+ ...+.++..++. ++++|+........+...+++.+
T Consensus 115 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i 191 (420)
T 1t3i_A 115 LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE-KTKLVTVVHISNTLGCVNPAEEI 191 (420)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHH
T ss_pred cCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC-CceEEEEeCCcccccCcCCHHHH
Confidence 67899998887766664433332 335677544 44433 456777777753 67788776655445556665443
No 101
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=22.84 E-value=2e+02 Score=31.23 Aligned_cols=79 Identities=9% Similarity=0.023 Sum_probs=56.4
Q ss_pred EEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCc
Q 004348 406 LHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483 (759)
Q Consensus 406 ~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT 483 (759)
.+|.+.+.... +...-...++.++|++...++-+... +..+++.+..|+..+..+.. ..++++..+++..+++
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~--~~~~lA~~~~G~v~vpl~~~---~~~~~l~~il~~~~~~ 103 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM--LATFVALTKSGHAYIPVDVH---SAPERILAIIEIAKPS 103 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHH--HHHHHHHHHTTCCEEEEETT---SCHHHHHHHHHHSCCS
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEecCcc---ccHHHHHHHHHhCCCC
Confidence 46777643222 12222346889999998888776543 45678899999998888643 3789999999999999
Q ss_pred EEEehH
Q 004348 484 IFYTAP 489 (759)
Q Consensus 484 ~l~~~P 489 (759)
++.+..
T Consensus 104 ~ii~~~ 109 (521)
T 3l8c_A 104 LIIAIE 109 (521)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 887643
No 102
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=22.50 E-value=1.9e+02 Score=30.64 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHc--CCCCCCEEEEEcCCC-hHHHHHHH-HHHHhCCeEEecC
Q 004348 239 LQQVCQLANYLKDI--GVKKGDAVIIYLPML-MELPIAML-ACARIGAVHSVVF 288 (759)
Q Consensus 239 ~~~a~~lA~~L~~~--Gv~~gd~Vai~~~~s-~e~iva~L-A~~kaGav~vpld 288 (759)
..+..++|..|.+. +|++|+.|.|..+-. .+++-++. ++.++|+-.+.+.
T Consensus 5 ~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 5 KRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 45677788777764 689999999999855 44444433 8889999777643
No 103
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=22.09 E-value=6.5e+02 Score=25.76 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=46.4
Q ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCC-----CCCHHHHHHHHHhc---CCe-EEEEeCC-cccCCcccch
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA-----GFSSDSLAQRIMDC---KPK-VVITSNA-VKRGPKAIHL 323 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp-----~~~~~~l~~il~~~---~~~-~iit~~~-~~~~~~~~~~ 323 (759)
+++||.|.+..|.-..+.- ++...|+..++++. .+..+.++..+++. +.+ +++.... ....+...+.
T Consensus 123 ~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~ 199 (418)
T 3rq1_A 123 TEPGDEVLTADWYWGAYRV---ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIED 199 (418)
T ss_dssp SCTTCEEEEESSCCTHHHH---HHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCH
T ss_pred cCCCCEEEECCCCchhHHH---HHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCH
Confidence 5789999888776655443 45678886555542 45678888888763 566 5665544 3444555554
Q ss_pred HHHHHHHHHH
Q 004348 324 KDIVDAALDE 333 (759)
Q Consensus 324 ~~~v~~~~~~ 333 (759)
.. +.+..+.
T Consensus 200 ~~-l~~l~~~ 208 (418)
T 3rq1_A 200 KD-WDSILNF 208 (418)
T ss_dssp HH-HHHHHHH
T ss_pred HH-HHHHHHH
Confidence 44 4444443
No 104
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=21.89 E-value=1.9e+02 Score=29.23 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=44.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHHhCCeEEec--CCCC--CHHHHHHHHHhcCCeEEEEeCCcccCCcccchHH
Q 004348 255 KKGDAVIIYLPMLMELPIAMLACARIGAVHSVV--FAGF--SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325 (759)
Q Consensus 255 ~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpl--dp~~--~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~ 325 (759)
++||.|.+..+..+-+.-++..+.+.|+..+.+ +++. ..+.++..++. ++++|+........+...+++.
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~ 159 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVEE 159 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHH
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEECCCCCceeeCCHHH
Confidence 579999888777776666555555678755544 4433 57778777653 5677777665555555556543
No 105
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=21.81 E-value=3.2e+02 Score=28.36 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=46.2
Q ss_pred CCCCCEEEEEcCCChHHHHHHH-HHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHH
Q 004348 254 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 327 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~L-A~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v 327 (759)
+++||.|.+..+.-....-.+- ++...|+..+.++.. ..+.++..++. +.++|+.+......+...+++.+.
T Consensus 98 ~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i~ 170 (404)
T 1e5e_A 98 LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVC 170 (404)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHH
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHHH
Confidence 5789998887666555444322 456678877777654 45666666643 678888776655556666654443
No 106
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=21.28 E-value=6.1e+02 Score=25.39 Aligned_cols=65 Identities=8% Similarity=0.036 Sum_probs=41.4
Q ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHhCC--eEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccc
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLACARIGA--VHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA~~kaGa--v~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~ 322 (759)
+++||.|.+..+.-..+. .++...|+ +++|++++...+.++..++.- .++++........+...+
T Consensus 102 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~ 168 (377)
T 3fdb_A 102 TPAQSKVIVPTPAYPPFF---HLLSATQREGIFIDATGGINLHDVEKGFQAG-ARSILLCNPYNPLGMVFA 168 (377)
T ss_dssp SCTTCCEEEEESCCTHHH---HHHHHHTCCEEEEECTTSCCHHHHHHHHHTT-CCEEEEESSBTTTTBCCC
T ss_pred cCCCCEEEEcCCCcHhHH---HHHHHcCCEEEEccCCCCCCHHHHHHHhccC-CCEEEEeCCCCCCCCCCC
Confidence 468999988777665543 33455676 556666557788898888764 556665554444444443
No 107
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=21.02 E-value=3e+02 Score=28.67 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=44.4
Q ss_pred CCCCCEEEEEcCCChHHHHHHHH-HHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHH
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLA-CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 327 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA-~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v 327 (759)
+++||.|.+..+.-......+.. +.+.|+..+.++.+ .+.++..++. +.++|+.+......+...+++.+.
T Consensus 92 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~ 163 (412)
T 2cb1_A 92 LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE--PEAVREALSA-KTRAVFVETVANPALLVPDLEALA 163 (412)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS--HHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHH
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--HHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHH
Confidence 67899988877655444433332 34568876666654 6777776653 667888766555555556655544
No 108
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=20.78 E-value=2.7e+02 Score=28.42 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=37.2
Q ss_pred CCCCCCEEEEEcCCCh------HHHHHHHHHH-HhCCeEEecCCC---------CC---HHHHHHHHHhcCCeEEEEeCC
Q 004348 253 GVKKGDAVIIYLPMLM------ELPIAMLACA-RIGAVHSVVFAG---------FS---SDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 253 Gv~~gd~Vai~~~~s~------e~iva~LA~~-kaGav~vpldp~---------~~---~~~l~~il~~~~~~~iit~~~ 313 (759)
-+++||+|+|++|.+. +.+-..+..+ ..|.-.+.-..- .+ ++.+..++.+-..++|++...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4789999999999863 2232333333 345544332111 11 345666777888888888765
Q ss_pred cc
Q 004348 314 VK 315 (759)
Q Consensus 314 ~~ 315 (759)
-.
T Consensus 88 G~ 89 (327)
T 4h1h_A 88 GF 89 (327)
T ss_dssp CS
T ss_pred ch
Confidence 43
No 109
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=20.63 E-value=3.9e+02 Score=27.19 Aligned_cols=72 Identities=22% Similarity=0.212 Sum_probs=44.8
Q ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHhCCeE--EecCCC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVH--SVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA~~kaGav~--vpldp~--~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (759)
+++||.|.+..+.-... ...-++...|+.. ++++++ ...+.++..++..++++|+........+...+++.+
T Consensus 90 ~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 165 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAE-RAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGV 165 (396)
T ss_dssp CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred cCCCCeEEEEcCCcccH-HHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHH
Confidence 57899988877665543 2222456678754 454443 567888888876567777776544444555555443
No 110
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=20.29 E-value=1.8e+02 Score=29.59 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHHhCCeEE--ecCCC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHH
Q 004348 255 KKGDAVIIYLPMLMELPIAMLACARIGAVHS--VVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325 (759)
Q Consensus 255 ~~gd~Vai~~~~s~e~iva~LA~~kaGav~v--pldp~--~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~ 325 (759)
++||.|.+..+..+.+.-++..+.+.|+.++ +++++ ...+.++..++. ++++|+........+...+++.
T Consensus 86 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~ 159 (382)
T 4eb5_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVEE 159 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHH
T ss_pred CCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-CCeEEEEeccCCCccccCCHHH
Confidence 5789887776665544433333334687554 44443 356777777653 5777777655444455556543
No 111
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=20.21 E-value=3.2e+02 Score=29.78 Aligned_cols=89 Identities=8% Similarity=-0.047 Sum_probs=60.6
Q ss_pred EEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCC----hhHHHHHHH
Q 004348 405 VLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD----SGRSWDIVD 478 (759)
Q Consensus 405 V~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d----~~~l~~~i~ 478 (759)
-.+|.+.+.... ....-...++.++|++...++-+... +..+++.+..|+..+..+......+ .+++..+++
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF--VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 467877743222 11122246899999999988877654 4568899999999888864311001 578888999
Q ss_pred HcCCcEEEehHHHHHHH
Q 004348 479 KYKVTIFYTAPTLVRSL 495 (759)
Q Consensus 479 ~~~vT~l~~~Ps~l~~l 495 (759)
..++..+.+.......+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999988876655444
No 112
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=20.06 E-value=3.9e+02 Score=26.98 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=44.7
Q ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHhCCeE--EecCCC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 004348 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVH--SVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (759)
Q Consensus 254 v~~gd~Vai~~~~s~e~iva~LA~~kaGav~--vpldp~--~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (759)
+++||.|.+..+.... ....-++...|+.. ++++.+ ...+.++..++..++++|+.+......+...+++.+
T Consensus 95 ~~~gd~vl~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 170 (393)
T 3kgw_A 95 LEPGDSFLTGTNGIWG-MRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGF 170 (393)
T ss_dssp CCTTCEEEEEESSHHH-HHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred CCCCCEEEEEeCCchh-HHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHH
Confidence 6789998887433221 11233445667744 455443 578899999987778888877655445555555443
No 113
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=20.02 E-value=2.8e+02 Score=23.62 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=38.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEec--CCCCCHH
Q 004348 246 ANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV--FAGFSSD 294 (759)
Q Consensus 246 A~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpl--dp~~~~~ 294 (759)
+.+|.+.|+.++..+.|...+..+.+-++-=+++.|...+.+ -+..+..
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~ 97 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRA 97 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHH
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChH
Confidence 578899999999888888888889999999999999854444 2345544
Done!