Query 004349
Match_columns 759
No_of_seqs 406 out of 2216
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 21:55:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03788 marine_srt_targ mari 100.0 2.9E-80 6.2E-85 722.8 65.0 528 91-635 3-574 (596)
2 PF13768 VWA_3: von Willebrand 99.9 5E-24 1.1E-28 206.9 17.7 153 327-487 1-155 (155)
3 TIGR02921 PEP_integral PEP-CTE 99.9 3.1E-23 6.8E-28 224.6 23.6 100 85-187 413-522 (952)
4 cd01461 vWA_interalpha_trypsin 99.9 7.1E-23 1.5E-27 201.4 20.4 169 326-499 2-170 (171)
5 PF08487 VIT: Vault protein in 99.9 2.3E-23 4.9E-28 192.7 13.7 110 83-198 2-118 (118)
6 smart00609 VIT Vault protein I 99.9 2.9E-23 6.2E-28 194.0 13.2 112 81-198 12-130 (130)
7 cd01463 vWA_VGCC_like VWA Volt 99.9 7.7E-22 1.7E-26 198.4 19.1 165 324-491 11-189 (190)
8 cd01465 vWA_subgroup VWA subgr 99.9 2.7E-20 5.8E-25 183.0 18.6 165 328-496 2-168 (170)
9 cd01466 vWA_C3HC4_type VWA C3H 99.8 3E-20 6.4E-25 180.7 17.8 153 327-489 1-155 (155)
10 cd01470 vWA_complement_factors 99.8 3.3E-19 7.1E-24 180.4 16.8 168 328-497 2-196 (198)
11 cd01456 vWA_ywmD_type VWA ywmD 99.8 4.3E-19 9.3E-24 180.7 17.3 166 323-491 17-203 (206)
12 TIGR00868 hCaCC calcium-activa 99.8 1.5E-17 3.2E-22 196.1 22.8 164 322-495 300-467 (863)
13 PRK13685 hypothetical protein; 99.8 1.8E-17 4E-22 180.3 21.5 171 324-504 86-289 (326)
14 cd01467 vWA_BatA_type VWA BatA 99.8 3.3E-17 7.2E-22 162.8 19.1 161 326-493 2-179 (180)
15 cd01480 vWA_collagen_alpha_1-V 99.7 2.7E-17 5.9E-22 164.8 16.8 158 326-492 2-173 (186)
16 PF13519 VWA_2: von Willebrand 99.7 2.7E-17 5.9E-22 160.8 15.8 164 328-500 1-171 (172)
17 cd01472 vWA_collagen von Wille 99.7 8E-17 1.7E-21 157.9 18.4 153 327-489 1-161 (164)
18 cd01464 vWA_subfamily VWA subf 99.7 3.1E-17 6.7E-22 162.9 15.3 141 326-479 3-159 (176)
19 cd01451 vWA_Magnesium_chelatas 99.7 9.7E-17 2.1E-21 159.6 17.8 156 329-493 3-169 (178)
20 cd01453 vWA_transcription_fact 99.7 1E-16 2.3E-21 160.0 17.6 163 327-500 4-177 (183)
21 cd01474 vWA_ATR ATR (Anthrax T 99.7 2.7E-16 5.8E-21 157.5 19.5 173 325-506 3-182 (185)
22 cd01471 vWA_micronemal_protein 99.7 1.7E-16 3.7E-21 158.9 17.5 150 328-481 2-161 (186)
23 cd01475 vWA_Matrilin VWA_Matri 99.7 2.8E-16 6.1E-21 162.2 18.0 171 326-506 2-184 (224)
24 cd01477 vWA_F09G8-8_type VWA F 99.7 3.6E-16 7.9E-21 157.1 17.2 159 323-485 16-189 (193)
25 TIGR03436 acidobact_VWFA VWFA- 99.7 7.9E-16 1.7E-20 165.6 20.6 176 325-507 52-256 (296)
26 cd01469 vWA_integrins_alpha_su 99.7 4.6E-16 9.9E-21 154.7 17.2 160 328-494 2-174 (177)
27 PTZ00441 sporozoite surface pr 99.7 4.3E-15 9.3E-20 166.9 21.4 182 325-510 41-235 (576)
28 cd01482 vWA_collagen_alphaI-XI 99.7 3.4E-15 7.3E-20 146.5 17.4 153 327-489 1-162 (164)
29 cd01462 VWA_YIEM_type VWA YIEM 99.6 4.8E-15 1E-19 143.3 16.5 145 327-480 1-147 (152)
30 cd01450 vWFA_subfamily_ECM Von 99.6 4.3E-15 9.2E-20 143.9 16.0 149 328-484 2-158 (161)
31 cd01473 vWA_CTRP CTRP for CS 99.6 2E-14 4.4E-19 144.6 20.0 172 328-504 2-189 (192)
32 PF00092 VWA: von Willebrand f 99.6 5.5E-15 1.2E-19 145.8 15.3 167 328-500 1-177 (178)
33 cd01476 VWA_integrin_invertebr 99.6 2E-14 4.3E-19 140.6 17.3 148 328-484 2-160 (163)
34 cd01454 vWA_norD_type norD typ 99.6 9.6E-15 2.1E-19 144.7 14.9 141 328-470 2-155 (174)
35 PRK13406 bchD magnesium chelat 99.6 5.3E-14 1.2E-18 162.5 19.1 159 323-492 398-571 (584)
36 smart00327 VWA von Willebrand 99.6 2.1E-13 4.6E-18 133.9 19.2 156 326-487 1-164 (177)
37 cd01455 vWA_F11C1-5a_type Von 99.6 1E-13 2.2E-18 136.8 16.5 168 327-504 1-188 (191)
38 cd00198 vWFA Von Willebrand fa 99.5 3.1E-13 6.6E-18 129.5 17.4 149 327-481 1-155 (161)
39 PF13757 VIT_2: Vault protein 99.5 8.1E-14 1.7E-18 116.9 10.9 70 81-155 9-78 (78)
40 COG4245 TerY Uncharacterized p 99.5 2.6E-13 5.7E-18 130.1 14.6 142 328-481 5-162 (207)
41 cd01481 vWA_collagen_alpha3-VI 99.5 1.2E-12 2.6E-17 128.6 18.3 146 327-482 1-157 (165)
42 COG1240 ChlD Mg-chelatase subu 99.5 4.5E-13 9.8E-18 135.9 15.3 166 323-494 75-250 (261)
43 TIGR02031 BchD-ChlD magnesium 99.5 4.9E-13 1.1E-17 155.9 17.5 159 324-492 405-584 (589)
44 KOG2353 L-type voltage-depende 99.4 1.1E-12 2.4E-17 158.0 16.4 185 322-512 221-419 (1104)
45 cd01457 vWA_ORF176_type VWA OR 99.4 2.3E-12 5E-17 130.6 15.7 147 326-480 2-165 (199)
46 TIGR02442 Cob-chelat-sub cobal 99.4 8.3E-12 1.8E-16 147.2 18.5 157 323-488 462-632 (633)
47 PF10138 vWA-TerF-like: vWA fo 99.3 6E-11 1.3E-15 117.7 18.9 159 327-494 2-174 (200)
48 cd01452 VWA_26S_proteasome_sub 99.2 6.2E-10 1.3E-14 110.7 18.5 144 328-481 5-161 (187)
49 cd01460 vWA_midasin VWA_Midasi 99.1 2E-09 4.4E-14 112.7 18.7 135 325-468 59-205 (266)
50 COG2425 Uncharacterized protei 99.1 2.8E-10 6E-15 125.3 12.0 146 327-481 273-419 (437)
51 PRK10997 yieM hypothetical pro 99.1 1.5E-09 3.2E-14 121.9 16.8 144 323-475 320-465 (487)
52 cd01458 vWA_ku Ku70/Ku80 N-ter 99.0 1.6E-08 3.5E-13 103.9 16.1 141 328-469 3-174 (218)
53 PF11775 CobT_C: Cobalamin bio 98.9 2.3E-08 5E-13 100.1 15.1 172 325-505 11-216 (219)
54 PF05762 VWA_CoxE: VWA domain 98.6 4E-07 8.7E-12 93.9 14.0 130 324-464 55-186 (222)
55 TIGR01651 CobT cobaltochelatas 98.6 2.5E-07 5.5E-12 104.6 11.6 173 324-505 390-596 (600)
56 PF09967 DUF2201: VWA-like dom 98.5 6.3E-07 1.4E-11 83.9 8.7 96 329-438 1-96 (126)
57 PF04056 Ssl1: Ssl1-like; Int 98.4 6.4E-06 1.4E-10 82.2 15.2 159 332-499 1-170 (193)
58 COG4867 Uncharacterized protei 98.3 2.2E-05 4.8E-10 84.2 16.0 160 324-498 461-642 (652)
59 COG4548 NorD Nitric oxide redu 98.2 2.9E-06 6.3E-11 93.6 8.1 177 325-506 445-636 (637)
60 KOG3768 DEAD box RNA helicase 98.1 1.9E-05 4.1E-10 87.7 12.6 173 329-510 4-233 (888)
61 COG2304 Uncharacterized protei 98.1 3.8E-05 8.2E-10 86.0 15.4 170 323-495 34-205 (399)
62 cd01468 trunk_domain trunk dom 98.1 0.00016 3.5E-09 75.4 18.9 163 325-491 2-224 (239)
63 PF04811 Sec23_trunk: Sec23/Se 98.0 0.00012 2.6E-09 76.7 15.9 164 325-492 2-227 (243)
64 cd01459 vWA_copine_like VWA Co 98.0 0.00014 3E-09 76.1 15.9 148 327-479 32-206 (254)
65 COG4547 CobT Cobalamin biosynt 98.0 4.6E-05 9.9E-10 82.7 12.0 166 328-504 415-616 (620)
66 KOG2807 RNA polymerase II tran 98.0 0.00013 2.9E-09 76.0 14.7 170 325-509 59-239 (378)
67 cd01479 Sec24-like Sec24-like: 98.0 0.00036 7.7E-09 73.1 17.8 159 325-489 2-219 (244)
68 PF06707 DUF1194: Protein of u 97.7 0.0014 3.1E-08 65.8 16.6 172 326-501 3-197 (205)
69 PRK05325 hypothetical protein; 97.7 0.0011 2.4E-08 73.1 16.0 161 325-504 221-396 (401)
70 PLN00162 transport protein sec 97.6 0.032 6.9E-07 67.7 29.1 178 323-504 121-392 (761)
71 cd01478 Sec23-like Sec23-like: 97.4 0.004 8.6E-08 66.0 16.1 164 325-492 2-257 (267)
72 PTZ00395 Sec24-related protein 97.4 0.03 6.4E-07 69.1 24.5 227 323-551 949-1260(1560)
73 TIGR02877 spore_yhbH sporulati 97.4 0.0049 1.1E-07 67.0 15.7 156 325-501 201-370 (371)
74 PF04285 DUF444: Protein of un 97.3 0.0063 1.4E-07 67.8 16.3 161 325-504 245-418 (421)
75 KOG1327 Copine [Signal transdu 97.2 0.0051 1.1E-07 69.6 14.3 150 325-479 284-463 (529)
76 KOG1985 Vesicle coat complex C 97.2 0.015 3.3E-07 68.0 17.9 179 309-490 277-510 (887)
77 COG3552 CoxE Protein containin 97.1 0.0029 6.3E-08 68.0 10.8 109 323-439 215-326 (395)
78 smart00187 INB Integrin beta s 97.1 0.024 5.3E-07 62.9 17.5 188 309-509 87-342 (423)
79 PF11443 DUF2828: Domain of un 96.9 0.0041 8.8E-08 71.3 10.0 103 327-436 341-448 (534)
80 KOG1984 Vesicle coat complex C 96.9 0.21 4.6E-06 59.1 23.7 290 323-616 414-794 (1007)
81 PF07002 Copine: Copine; Inte 96.9 0.014 3.1E-07 56.0 12.0 120 342-466 11-146 (146)
82 COG5028 Vesicle coat complex C 96.7 0.56 1.2E-05 55.1 24.9 311 311-625 261-656 (861)
83 PF03731 Ku_N: Ku70/Ku80 N-ter 96.6 0.0068 1.5E-07 62.5 8.3 107 329-436 2-140 (224)
84 TIGR00627 tfb4 transcription f 96.6 0.075 1.6E-06 56.4 16.0 169 328-498 4-217 (279)
85 COG5151 SSL1 RNA polymerase II 96.3 0.034 7.5E-07 57.9 10.8 171 325-509 86-270 (421)
86 KOG2884 26S proteasome regulat 96.2 0.22 4.8E-06 49.9 15.8 133 328-470 5-149 (259)
87 COG3864 Uncharacterized protei 95.8 0.024 5.2E-07 59.5 7.4 93 328-437 263-355 (396)
88 PF03850 Tfb4: Transcription f 95.8 0.51 1.1E-05 50.3 17.5 167 328-496 3-213 (276)
89 TIGR00578 ku70 ATP-dependent D 95.4 0.19 4.1E-06 59.4 13.6 109 326-435 10-149 (584)
90 COG5148 RPN10 26S proteasome r 95.2 0.58 1.2E-05 45.9 13.9 139 327-475 4-154 (243)
91 COG2718 Uncharacterized conser 94.9 0.17 3.7E-06 54.9 10.3 160 327-505 247-418 (423)
92 KOG4465 Uncharacterized conser 94.3 0.23 5E-06 53.1 9.4 135 322-466 423-562 (598)
93 PF14415 DUF4424: Domain of un 93.8 0.57 1.2E-05 49.2 11.3 50 103-155 2-69 (253)
94 PF11265 Med25_VWA: Mediator c 93.7 0.49 1.1E-05 48.6 10.2 112 323-436 10-150 (226)
95 COG1721 Uncharacterized conser 93.4 0.58 1.2E-05 53.1 11.3 105 325-436 223-334 (416)
96 PF00362 Integrin_beta: Integr 93.3 0.23 4.9E-06 56.2 7.8 189 309-509 90-345 (426)
97 COG5242 TFB4 RNA polymerase II 93.2 8.2 0.00018 39.1 17.4 148 344-495 43-219 (296)
98 KOG1986 Vesicle coat complex C 92.0 13 0.00028 43.8 19.5 49 325-375 120-168 (745)
99 KOG2487 RNA polymerase II tran 80.6 32 0.00069 36.1 12.7 166 325-494 22-231 (314)
100 PF04597 Ribophorin_I: Ribopho 75.4 31 0.00068 39.3 12.3 90 94-198 10-103 (432)
101 COG5271 MDN1 AAA ATPase contai 74.8 50 0.0011 43.5 14.0 120 327-450 4393-4521(4600)
102 KOG1226 Integrin beta subunit 72.5 8.9 0.00019 45.6 7.0 60 308-373 119-181 (783)
103 TIGR03602 streptolysinS bacter 71.9 1.4 3E-05 33.4 0.2 7 711-717 28-34 (56)
104 KOG2326 DNA-binding subunit of 57.9 1.9E+02 0.004 34.0 13.5 132 327-466 5-165 (669)
105 PF06415 iPGM_N: BPG-independe 53.0 80 0.0017 32.6 9.0 77 408-485 13-98 (223)
106 PF01601 Corona_S2: Coronaviru 49.5 5.5 0.00012 46.2 0.0 12 743-754 579-590 (610)
107 COG5047 SEC23 Vesicle coat com 41.9 60 0.0013 37.7 6.5 50 324-375 120-169 (755)
108 KOG2291 Oligosaccharyltransfer 41.5 1.6E+02 0.0036 34.0 9.8 100 86-197 31-132 (602)
109 PF01601 Corona_S2: Coronaviru 39.4 9.9 0.00021 44.2 0.0 7 700-706 570-576 (610)
110 PF01882 DUF58: Protein of unk 32.4 54 0.0012 27.8 3.6 41 325-365 39-85 (86)
111 PF15417 DUF4624: Domain of un 31.9 3.9E+02 0.0085 24.4 8.7 91 101-195 15-107 (132)
112 COG3364 Zn-ribbon containing p 29.8 60 0.0013 29.0 3.2 38 171-215 66-103 (112)
113 KOG0071 GTP-binding ADP-ribosy 27.9 1.3E+02 0.0029 28.7 5.4 30 326-358 85-114 (180)
114 cd02004 TPP_BZL_OCoD_HPCL Thia 27.5 5.3E+02 0.011 24.9 10.1 41 474-515 131-171 (172)
115 TIGR03820 lys_2_3_AblA lysine- 26.1 6.8E+02 0.015 28.5 11.7 39 482-520 289-327 (417)
116 PF12690 BsuPI: Intracellular 25.2 2.8E+02 0.0061 23.8 6.6 77 104-209 2-80 (82)
117 KOG0070 GTP-binding ADP-ribosy 24.7 3.4E+02 0.0074 27.1 7.9 85 327-419 86-178 (181)
118 PRK05434 phosphoglyceromutase; 23.3 4.4E+02 0.0096 30.8 9.8 62 408-470 95-157 (507)
119 PF08496 Peptidase_S49_N: Pept 22.2 1.3E+02 0.0027 29.4 4.3 42 326-367 96-137 (155)
120 TIGR01307 pgm_bpd_ind 2,3-bisp 21.7 5.7E+02 0.012 29.9 10.1 62 408-470 91-153 (501)
121 PF00025 Arf: ADP-ribosylation 20.9 3.6E+02 0.0079 26.1 7.5 28 327-357 83-110 (175)
122 PF10633 NPCBM_assoc: NPCBM-as 20.9 1.6E+02 0.0034 24.6 4.2 30 182-211 44-73 (78)
123 KOG0716 Molecular chaperone (D 20.5 30 0.00064 36.4 -0.4 25 697-721 122-150 (279)
No 1
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=100.00 E-value=2.9e-80 Score=722.80 Aligned_cols=528 Identities=23% Similarity=0.409 Sum_probs=438.4
Q ss_pred EEEEEEEEeceEEEEEEEEEEEccCCCCceeEEEEEeecCCCceEEEEEEEECCEEEEEEEEeeccccccc--ccccccc
Q 004349 91 VELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAG--KSASVET 168 (759)
Q Consensus 91 v~v~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLpe~a~V~~f~~~i~gk~i~g~V~eke~A~~~~--~~~~~~~ 168 (759)
++|++++.+.+|+|+++|+|+|+ +++++||+|+||||++|+|++|+|+||||+|+|+|+||++|++.| ++++|++
T Consensus 3 ~~v~~~V~g~~A~v~v~q~f~N~---~~~~~E~~y~fPLp~~aaV~~f~~~i~~r~i~g~v~eKe~A~~~Ye~a~~~G~~ 79 (596)
T TIGR03788 3 TDANITVTGLIARTEVTQTFRNP---SQFWVEGRYVFPLPENAAVDSLTMHIGERVIVGQIMPKAAARAIYEQAKAEGKK 79 (596)
T ss_pred ceEEEEEEcceEEEEEEEEEECC---CCCcEEEEEEeeCCCCcEEEEEEEEECCEEEEEEEeeHHHHHHHHHHHHHhccc
Confidence 34444444568999999999994 689999999999999999999999999999999999999999755 4567889
Q ss_pred ccce---eCCeEEEEccccCCCCEEEEEEEEEEEeeecCCeEEEEEeecc-CccccCccc----------------CCC-
Q 004349 169 GSFL---KPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKF-PEYVTPAIK----------------KIP- 227 (759)
Q Consensus 169 aall---~~n~F~~~VgnIppg~~v~V~l~Y~q~L~~~~g~~~l~lp~~~-P~~v~P~~~----------------~~~- 227 (759)
|+|+ ++|+|+++|||||||++++|+|+|+|+|.+++|.|++++|+++ |+|..+... ..+
T Consensus 80 a~Lleq~~~~~F~~~V~nIpp~~~v~i~l~Y~q~L~~~~g~~~~~lP~~~~pry~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (596)
T TIGR03788 80 AALVEQQRPNLFTNKVANIGPGETVVVTIEYQQPVSYSSGTFSLRLPLTVTPRYIPGSTVNTVTDVNNSGWAIPTTQVPD 159 (596)
T ss_pred eeeeecccCCceeEEeeccCCCCEEEEEEEEEEEeeecCCEEEEEeeeeecCCccCCccccccccccccccccccccccc
Confidence 9998 6999999999999999999999999999999999999999886 777532110 000
Q ss_pred ----------------CccceEEEEecCCCeeE-eeccCCcccceeeecCceEEEeeccccccccCCceEEEEEecCCCc
Q 004349 228 ----------------KREKIHLNVNAGTGTEV-LCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHI 290 (759)
Q Consensus 228 ----------------~~~~i~l~V~~~~~~~i-~i~s~sh~i~~~~~~~~~~~~~~~~~~~~~~~~DF~l~~~~~~~~~ 290 (759)
...+++++++...+.++ .+.|++|+++..+...+...++++.. ..++++||+|.|++...+.
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~i~s~~h~i~~~~~~~~~~~v~l~~~-~~~~d~Df~l~~~~~~~~~ 238 (596)
T TIGR03788 160 ADKISAPRVLDPDDDAPSSQASINVDLNAGLPLDSITSPSHPIQIEQQGQSGYTISLAQG-QVIADRDFVLTWRPAQGEA 238 (596)
T ss_pred ccccCCccccCcccCCCCcceEEEEEecCCCccceeeCCCCceEeecCCCceEEEEeCCC-CcCCCCCEEEEEEeCCCCC
Confidence 01223444444334333 57899999988776656666777643 3589999999999976543
Q ss_pred ccceEEeCCCCCCCCCcceEEEEecCCCc-ccCCCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEE
Q 004349 291 FGGVLLQSPSLHDVDQREMFCMYLLPGTA-KSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAF 369 (759)
Q Consensus 291 ~~~v~~~~~~~~~~d~~~~f~l~~~P~~~-~~~~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F 369 (759)
+..++... ..++.+||++++.|+.. ......+++++||||+||||.|.+++.+|+++..++..|+++|+|+|+.|
T Consensus 239 -p~~~~~~~---~~~~~~y~~~~~~pp~~~~~~~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~ii~F 314 (596)
T TIGR03788 239 -PSAALFRE---QIGGERYGLAMVMPPTEAAVAQVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFNIIQF 314 (596)
T ss_pred -ceEEEEEE---ccCCCcEEEEEEeCCCccccccCCCceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 33333211 13456799988888763 33457789999999999999999999999999999999999999999999
Q ss_pred CCceEEeeccccccCHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHHhcC-CCCCCEEEEEeCCCCCChHHHHHHHHH
Q 004349 370 NGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNS-RGSIPIIFLVTDGAVEDERQICDAMKS 448 (759)
Q Consensus 370 ~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT~i~~aL~~A~~~l~~~-~~~~~~IiLlTDG~~~~~~~i~~~v~~ 448 (759)
+++...+.+....++..+++++.++|. .+.++|||+|+.+|+.|++..... .+..+.|||||||.++++..+.+.++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~ 393 (596)
T TIGR03788 315 DSDVTLLFPVPVPATAHNLARARQFVA-GLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGNEDALFQLIRT 393 (596)
T ss_pred CCcceEeccccccCCHHHHHHHHHHHh-hCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCCHHHHHHHHHH
Confidence 999998877777789999999999998 688999999999999999874322 345678999999999888777776654
Q ss_pred HHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHhhhcceEeeEEEEecCCCcceeecc
Q 004349 449 RLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYP 528 (759)
Q Consensus 449 ~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~~~p~l~di~l~~~~~~~~~ev~P 528 (759)
.. .+.|||+||||+++|.++|+.||+.|+|.|+++.+.+++..++.+++.++.+|+++|+.++|.+ ....+++|
T Consensus 394 ~~-----~~~ri~tvGiG~~~n~~lL~~lA~~g~G~~~~i~~~~~~~~~~~~~l~~~~~p~l~~v~v~~~~-~~~~~v~P 467 (596)
T TIGR03788 394 KL-----GDSRLFTVGIGSAPNSYFMRKAAQFGRGSFTFIGSTDEVQRKMSQLFAKLEQPALTDIALTFDN-GNAADVYP 467 (596)
T ss_pred hc-----CCceEEEEEeCCCcCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHHHHhhcCeEEEEEEEEEcC-Cccceecc
Confidence 32 2479999999999999999999999999999999999999999999999999999999999963 34678999
Q ss_pred CCCCCCCCCCcEEEEEEEcCCCCCeEEEEEEeCCcccEEEEEeecc-ccCCchhHHHHHHHHHHHHHHHhh-ccchHHHH
Q 004349 529 SRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQL-AKDIPLDRICAKQQIDLLTAQAWF-SEDKRLEE 606 (759)
Q Consensus 529 ~~i~~lf~g~~liv~Gr~~g~~~~~v~l~G~~~~~~~~~~~l~~~~-~~~~~l~~lwA~~~I~~L~~~~~~-~~~~~~k~ 606 (759)
..+|+||.|++++|+||+. ..+.+++++|..+++ .|+.++++.. ..+..|++|||+++|++|+++.+. .+.+++++
T Consensus 468 ~~~p~L~~g~~l~v~g~~~-~~~~~i~v~g~~~~~-~~~~~~~~~~~~~~~~l~~lwA~~~I~~L~~~~~~~~~~~~~~~ 545 (596)
T TIGR03788 468 SPIPDLYRGEPLQIAIKLQ-QAAGELQLTGRTGSQ-PWSQQLDLDSAAPGKGIDKLWARRKIDSLEDSLRYGANEEKVKD 545 (596)
T ss_pred CCCccccCCCEEEEEEEec-CCCCeEEEEEEcCCc-eEEEEEecCCCCCcchHHHHHHHHHHHHHHHHHhhcCCcHHHHH
Confidence 9999999999999999974 467889999998887 4888888764 345779999999999999987654 34567899
Q ss_pred HHHHHhhhhCCCCccceEEEEEcccCCCC
Q 004349 607 KVSKMSVQTGVLCEYTRMIIVETDERNNA 635 (759)
Q Consensus 607 eIv~LS~~y~ivS~yTSfVave~~~~~~~ 635 (759)
+|++||++|+|+|+||||||||++..++.
T Consensus 546 ~Ii~Lsl~y~lvT~~TS~vave~~~~~~~ 574 (596)
T TIGR03788 546 QVTALALNHHLVSPFTSFVAVEETPIRPA 574 (596)
T ss_pred HHHHHHHHhCCCCcceeEEEEecccccCC
Confidence 99999999999999999999999887733
No 2
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.92 E-value=5e-24 Score=206.91 Aligned_cols=153 Identities=39% Similarity=0.577 Sum_probs=135.6
Q ss_pred ceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccC-CCCC
Q 004349 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA-GGST 405 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~-~GgT 405 (759)
.+++||||+|+||.|.+ +.+|+++..++++|+++|+|||+.|+++...|.+...+++.++++++++||+ .+.+ .|+|
T Consensus 1 ~~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~-~~~~~~G~t 78 (155)
T PF13768_consen 1 ADVVILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFPGLVPATEENRQEALQWIK-SLEANSGGT 78 (155)
T ss_pred CeEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHH-HhcccCCCc
Confidence 37999999999999988 9999999999999999999999999999998888888899999999999998 5777 9999
Q ss_pred chHHHHHHHHHHHhcCCCCCCEEEEEeCCCC-CChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCE
Q 004349 406 NICAPLTKAVEMLTNSRGSIPIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGY 484 (759)
Q Consensus 406 ~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~-~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~ 484 (759)
++..||+.|++.+ ..++..+.|||+|||.+ +.+..+.+.+++.. ..+|||+||+|...+..+|+.||+.++|+
T Consensus 79 ~l~~aL~~a~~~~-~~~~~~~~IilltDG~~~~~~~~i~~~v~~~~-----~~~~i~~~~~g~~~~~~~L~~LA~~~~G~ 152 (155)
T PF13768_consen 79 DLLAALRAALALL-QRPGCVRAIILLTDGQPVSGEEEILDLVRRAR-----GHIRIFTFGIGSDADADFLRELARATGGS 152 (155)
T ss_pred cHHHHHHHHHHhc-ccCCCccEEEEEEeccCCCCHHHHHHHHHhcC-----CCceEEEEEECChhHHHHHHHHHHcCCCE
Confidence 9999999999986 33566789999999995 55666666665421 45899999999999999999999999999
Q ss_pred EEE
Q 004349 485 YGA 487 (759)
Q Consensus 485 ~~~ 487 (759)
|.+
T Consensus 153 ~~f 155 (155)
T PF13768_consen 153 FHF 155 (155)
T ss_pred EEC
Confidence 974
No 3
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=99.91 E-value=3.1e-23 Score=224.57 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=85.5
Q ss_pred cceeceEEEEEEEEeceEEEEEEEEEEEccCCCCceeEEEEEeecCCCceEEEEEEEECCEEEEE---EEEeeccccccc
Q 004349 85 PLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHT---QLIALGENDGAG 161 (759)
Q Consensus 85 PL~~~~v~v~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLpe~a~V~~f~~~i~gk~i~g---~V~eke~A~~~~ 161 (759)
++...+.+|+|+..+.+|+|+++|+|+|| +++++||.|.||||++|+|++|+|+++|++.++ +|+||++||+.|
T Consensus 413 aV~L~Sh~VtVeIeg~iA~TEIEqTF~NP---N~r~LEGElsFPLPEgAtVTGyALdvdGkL~Daw~~VVVEKEKARQVY 489 (952)
T TIGR02921 413 KVLIANMAITVEEHGDNADIEIVETLENQ---TPENHEVFFHFSLPEEAAITGLWLGDDAKDDDKFAFALAPRGAAQKVY 489 (952)
T ss_pred ceeEeeeeEEEEEECCeEEEEEEEEEECC---CCCceeEEEEecCCCCCeeeeeeecCCccccccccceeccHHHHHHHH
Confidence 44444455555555679999999999996 599999999999999999999999999999988 999999999644
Q ss_pred --ccccc--ccccce---eCCeEEEEccccCCC
Q 004349 162 --KSASV--ETGSFL---KPNIFTLTLPQIDGG 187 (759)
Q Consensus 162 --~~~~~--~~aall---~~n~F~~~VgnIppg 187 (759)
+++++ .|++|+ .+|.|++||+||||.
T Consensus 490 EdevRQGrpiDPALLEK~~gN~FriRVYPIPPr 522 (952)
T TIGR02921 490 NDEVQQERPIDPALLEQVGPRHYRLRAFPIPPR 522 (952)
T ss_pred HHHHHhcCCCCchhheeccCCeeeEEEccCCcc
Confidence 45666 699998 589999999999993
No 4
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.91 E-value=7.1e-23 Score=201.43 Aligned_cols=169 Identities=44% Similarity=0.635 Sum_probs=146.3
Q ss_pred CceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCCCC
Q 004349 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST 405 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT 405 (759)
|++++||||+||||.+.+++.+|+++..++..++++++|+|+.|+++...+.+.....+..++.++++++. .+.++|+|
T Consensus 2 ~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~g~T 80 (171)
T cd01461 2 PKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVN-RLQALGGT 80 (171)
T ss_pred CceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCcceeCCHHHHHHHHHHHH-hcCCCCCc
Confidence 78999999999999999999999999999999999999999999999877665444557788888899887 67789999
Q ss_pred chHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEE
Q 004349 406 NICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYY 485 (759)
Q Consensus 406 ~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~ 485 (759)
++..+|..|++.+...++..+.||++|||..++..++.+.+++.. ..+++||+||+|...+..+|+.||+.++|.|
T Consensus 81 ~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~----~~~i~i~~i~~g~~~~~~~l~~ia~~~gG~~ 156 (171)
T cd01461 81 NMNDALEAALELLNSSPGSVPQIILLTDGEVTNESQILKNVREAL----SGRIRLFTFGIGSDVNTYLLERLAREGRGIA 156 (171)
T ss_pred CHHHHHHHHHHhhccCCCCccEEEEEeCCCCCCHHHHHHHHHHhc----CCCceEEEEEeCCccCHHHHHHHHHcCCCeE
Confidence 999999999999876455678999999999877766666655442 2268999999999999999999999999999
Q ss_pred EEEcCCchHHHHHH
Q 004349 486 GAAYDLDSIEIQMQ 499 (759)
Q Consensus 486 ~~v~d~~~l~~~l~ 499 (759)
+++.+.+++.+++.
T Consensus 157 ~~~~~~~~~~~~~~ 170 (171)
T cd01461 157 RRIYETDDIESQLL 170 (171)
T ss_pred EEecChHHHHHHhc
Confidence 99999999988764
No 5
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=99.90 E-value=2.3e-23 Score=192.74 Aligned_cols=110 Identities=20% Similarity=0.305 Sum_probs=97.5
Q ss_pred eecceeceEEEEEEEEeceEEEEEEEEEEEccCCCCceeEEEEEeecCCCceEEEEEEEECCEEEEEEEEeeccccccc-
Q 004349 83 LIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAG- 161 (759)
Q Consensus 83 ~vPL~~~~v~v~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLpe~a~V~~f~~~i~gk~i~g~V~eke~A~~~~- 161 (759)
.+||++..|+++|. +.+|+|+++|+|.| ++++++|+.|.||||++|+|++|+|+||||+|+|+|+||++|++.|
T Consensus 2 ~~~l~s~~v~~~I~--~~~a~t~v~q~f~N---~~~~~~E~~y~fpLp~~A~i~~f~~~i~g~~i~g~v~ek~~A~~~y~ 76 (118)
T PF08487_consen 2 QVPLKSVHVKVTII--DRFARTTVTQTFEN---PSSEPLEAVYSFPLPEGAAISGFSMWIGGRTIEGEVKEKEEAKQEYE 76 (118)
T ss_pred CceEEEEEEEEEEE--ccEEEEEEEEEEEC---CCCCcEEEEEEeECCCCeEEEEEEEEECCEEEEEEEecHHHHHHHHH
Confidence 36777766666555 46899999999999 5789999999999999999999999999999999999999999655
Q ss_pred -cccccccccce---eCCe--EEEEccccCCCCEEEEEEEEEE
Q 004349 162 -KSASVETGSFL---KPNI--FTLTLPQIDGGSYLSIRLRWSQ 198 (759)
Q Consensus 162 -~~~~~~~aall---~~n~--F~~~VgnIppg~~v~V~l~Y~q 198 (759)
++++|++++|| ++|. |+++| |||||++++|+|+|+|
T Consensus 77 ~a~~~g~~a~lle~~~~~~~~F~~~v-ni~p~~~v~i~l~Y~e 118 (118)
T PF08487_consen 77 EAVAQGKSAALLEQSDPNVEVFTVSV-NIPPNEEVTIELTYVE 118 (118)
T ss_pred HHHHcCCCchhhcccCCCCcEEEEEE-EeCCCCEEEEEEEEEC
Confidence 56789999998 4667 99999 9999999999999986
No 6
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain.
Probab=99.90 E-value=2.9e-23 Score=193.95 Aligned_cols=112 Identities=16% Similarity=0.191 Sum_probs=99.3
Q ss_pred CceecceeceEEEEEEEEeceEEEEEEEEEEEccCCCCceeEEEEEeecCCCceEEEEEEEECCEEEEEEEEeecccccc
Q 004349 81 PSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGA 160 (759)
Q Consensus 81 ~~~vPL~~~~v~v~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLpe~a~V~~f~~~i~gk~i~g~V~eke~A~~~ 160 (759)
...+||++.+|+++|.+ .+|+|+++|+|.|+ ++.+.|+.|.||||++|+|++|+|+||||+|+|+|+||++||++
T Consensus 12 ~~~~pL~s~~v~~~I~~--~~a~t~vtq~f~N~---~~~~~e~~~~~~lp~~A~v~~~~~~i~~r~i~g~vkeK~~Ar~~ 86 (130)
T smart00609 12 VNGVPLYSLKVNSKVTS--RFAHTVVTSRVVNR---AVPAQEVTFDVELPKTAFISNFAMTIDGKTYVGEIKEKEVAQKQ 86 (130)
T ss_pred CCccceEEEEEEEEEEC--CEEEEEEEEEEECC---CCCceEEEEEcCCCCCcEEEeEEEEECCEEEEEEEeeHHHHHHH
Confidence 45678888666666665 58999999999995 58899999999999999999999999999999999999999965
Q ss_pred c--cccccccccce---eC--CeEEEEccccCCCCEEEEEEEEEE
Q 004349 161 G--KSASVETGSFL---KP--NIFTLTLPQIDGGSYLSIRLRWSQ 198 (759)
Q Consensus 161 ~--~~~~~~~aall---~~--n~F~~~VgnIppg~~v~V~l~Y~q 198 (759)
| ++++|++++|+ ++ |+|+++| |||||++++|+|+|+|
T Consensus 87 Ye~A~~~G~~a~L~eq~~~~~~~F~~~V-NIppg~~v~v~l~Y~e 130 (130)
T smart00609 87 YEKAVSQGKTAGLVRASGRSMEQFTVSV-NVAPGSKVTFELTYEE 130 (130)
T ss_pred HHHHHHcCCCeEEEEecCCccCcEEEEE-EeCCCCEEEEEEEEEC
Confidence 5 45789999998 46 9999999 9999999999999985
No 7
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.88 E-value=7.7e-22 Score=198.38 Aligned_cols=165 Identities=27% Similarity=0.395 Sum_probs=134.7
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccc----cccCHHHHHHHHHHHhccc
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSM----ELATKEAVERAHQWIGINF 399 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~----~~~t~~~i~~a~~~I~~~~ 399 (759)
..|++++||||+||||.+.+++.+|+++..+++.|+++|+|+|+.|++++..+.+.. ...+..+.+.+.++|. .+
T Consensus 11 ~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l 89 (190)
T cd01463 11 TSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEALD-ML 89 (190)
T ss_pred cCCceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHHh-hC
Confidence 468999999999999999999999999999999999999999999999987665432 1234567788888887 67
Q ss_pred cCCCCCchHHHHHHHHHHHhc---C------CCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCc-
Q 004349 400 IAGGSTNICAPLTKAVEMLTN---S------RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC- 469 (759)
Q Consensus 400 ~~~GgT~i~~aL~~A~~~l~~---~------~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~- 469 (759)
.++|+|++..||+.|++.+.. . +...+.|||||||.+++...+...+... .....+++||+||+|.+.
T Consensus 90 ~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~--~~~~~~v~i~tigiG~~~~ 167 (190)
T cd01463 90 EAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYNWD--KNSEIPVRVFTYLIGREVT 167 (190)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhccc--ccCCCcEEEEEEecCCccc
Confidence 889999999999999998875 1 1234689999999988766554433211 112246899999999985
Q ss_pred CHHHHHHHHhhcCCEEEEEcCC
Q 004349 470 NHYFLRMLAMISRGYYGAAYDL 491 (759)
Q Consensus 470 n~~lL~~LA~~~gG~~~~v~d~ 491 (759)
|..+|+.||..++|.|+++.+.
T Consensus 168 d~~~L~~lA~~~~G~~~~i~~~ 189 (190)
T cd01463 168 DRREIQWMACENKGYYSHIQSL 189 (190)
T ss_pred cchHHHHHHhhcCCeEEEcccC
Confidence 8999999999999999998864
No 8
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.85 E-value=2.7e-20 Score=183.02 Aligned_cols=165 Identities=24% Similarity=0.313 Sum_probs=129.2
Q ss_pred eEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCCCCch
Q 004349 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNI 407 (759)
Q Consensus 328 dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT~i 407 (759)
+++||+|+||||.+.+++.+|+++..++..|+++++++++.|+++...+.+.....+. +.+.+.+. .+.++|+|++
T Consensus 2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~~~~~~~~~~~---~~l~~~l~-~~~~~g~T~~ 77 (170)
T cd01465 2 NLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPATPVRDK---AAILAAID-RLTAGGSTAG 77 (170)
T ss_pred cEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccEEecCcccchH---HHHHHHHH-cCCCCCCCCH
Confidence 6899999999999989999999999999999999999999999998776654332333 44445555 5667899999
Q ss_pred HHHHHHHHHHHhcCC--CCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEE
Q 004349 408 CAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYY 485 (759)
Q Consensus 408 ~~aL~~A~~~l~~~~--~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~ 485 (759)
..+|+.|++.+.... ...+.|||+|||.++......+.+.+.+......+++||+||+|...+..+|+.||+.++|.|
T Consensus 78 ~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~~~~~~l~~ia~~~~g~~ 157 (170)
T cd01465 78 GAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDNYNEDLMEAIADAGNGNT 157 (170)
T ss_pred HHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCCcCHHHHHHHHhcCCceE
Confidence 999999999886532 223689999999976432222222222222223468999999999999999999999999999
Q ss_pred EEEcCCchHHH
Q 004349 486 GAAYDLDSIEI 496 (759)
Q Consensus 486 ~~v~d~~~l~~ 496 (759)
+++.+.+++++
T Consensus 158 ~~~~~~~~~~~ 168 (170)
T cd01465 158 AYIDNLAEARK 168 (170)
T ss_pred EEeCCHHHHHh
Confidence 99999888765
No 9
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.85 E-value=3e-20 Score=180.69 Aligned_cols=153 Identities=28% Similarity=0.438 Sum_probs=125.3
Q ss_pred ceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCCCCc
Q 004349 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTN 406 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT~ 406 (759)
.+++||||.|+||.+.+++.+|+++..+++.|+++++++|+.|+++.+.+.+.. ..+..+...+.+++. .+.++|+|+
T Consensus 1 ~~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~~~~~-~~~~~~~~~~~~~i~-~~~~~g~T~ 78 (155)
T cd01466 1 VDLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSPLR-RMTAKGKRSAKRVVD-GLQAGGGTN 78 (155)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcceEEEEEecCCccccCCCc-ccCHHHHHHHHHHHH-hccCCCCcc
Confidence 379999999999999999999999999999999999999999999987766643 234555666677776 578899999
Q ss_pred hHHHHHHHHHHHhcCC--CCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCE
Q 004349 407 ICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGY 484 (759)
Q Consensus 407 i~~aL~~A~~~l~~~~--~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~ 484 (759)
+..||+.+.+.+.... +....|||+|||.+++.... . .....++.+|+||+|...+...|+.||+.++|.
T Consensus 79 ~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~~~---~-----~~~~~~v~v~~igig~~~~~~~l~~iA~~t~G~ 150 (155)
T cd01466 79 VVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAVV---L-----RADNAPIPIHTFGLGASHDPALLAFIAEITGGT 150 (155)
T ss_pred HHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcchhh---h-----cccCCCceEEEEecCCCCCHHHHHHHHhccCce
Confidence 9999999999986532 33468999999998654111 1 112346899999999989999999999999999
Q ss_pred EEEEc
Q 004349 485 YGAAY 489 (759)
Q Consensus 485 ~~~v~ 489 (759)
|+++.
T Consensus 151 ~~~~~ 155 (155)
T cd01466 151 FSYVK 155 (155)
T ss_pred EEEeC
Confidence 99874
No 10
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.81 E-value=3.3e-19 Score=180.45 Aligned_cols=168 Identities=18% Similarity=0.289 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCC---CCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhcccc----
Q 004349 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFI---- 400 (759)
Q Consensus 328 dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~---- 400 (759)
+|+||||+||||.+.+++.+|+++..+++.|.. +++++|+.|+++++.+.+.... ...+...++++|+ .+.
T Consensus 2 di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~~~~~ 79 (198)
T cd01470 2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDF-NSNDADDVIKRLE-DFNYDDH 79 (198)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecccC-CCCCHHHHHHHHH-hCCcccc
Confidence 799999999999999999999999999999863 7899999999998776654322 2223334444444 232
Q ss_pred -CCCCCchHHHHHHHHHHHhcC--------CCCCCEEEEEeCCCCCC---hHHHHHHHHHHHHcC------CCCCceEEE
Q 004349 401 -AGGSTNICAPLTKAVEMLTNS--------RGSIPIIFLVTDGAVED---ERQICDAMKSRLTNG------GSICPRIYT 462 (759)
Q Consensus 401 -~~GgT~i~~aL~~A~~~l~~~--------~~~~~~IiLlTDG~~~~---~~~i~~~v~~~~~~~------~~~~~rI~t 462 (759)
.+|||+++.||+.+++.+... ...++.|||||||..+. .....+.+++.+... ...+++||+
T Consensus 80 ~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~ 159 (198)
T cd01470 80 GDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLDVYV 159 (198)
T ss_pred cCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcceeEEE
Confidence 358999999999998876321 11246799999999863 223334444433211 223589999
Q ss_pred EEecCCcCHHHHHHHHhhcCC--EEEEEcCCchHHHH
Q 004349 463 FGIGSYCNHYFLRMLAMISRG--YYGAAYDLDSIEIQ 497 (759)
Q Consensus 463 ~GiG~~~n~~lL~~LA~~~gG--~~~~v~d~~~l~~~ 497 (759)
||+|+++|...|+.||..++| +++.+.+.+++.+.
T Consensus 160 iGvG~~~~~~~L~~iA~~~~g~~~~f~~~~~~~l~~v 196 (198)
T cd01470 160 FGVGDDVNKEELNDLASKKDNERHFFKLKDYEDLQEV 196 (198)
T ss_pred EecCcccCHHHHHHHhcCCCCCceEEEeCCHHHHHHh
Confidence 999999999999999999999 57778777766543
No 11
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.81 E-value=4.3e-19 Score=180.74 Aligned_cols=166 Identities=19% Similarity=0.281 Sum_probs=123.5
Q ss_pred CCCCceEEEEEcCCCCCC------CCChHHHHHHHHHHHHhCCCCCeEEEEEECCceE------Eee---ccccc---cC
Q 004349 323 KVFKKDVIFIVDISGSMQ------GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETY------LFS---TSMEL---AT 384 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~------g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~------~~~---~~~~~---~t 384 (759)
...+.+++||||+||||. +.+|+.+|+++..+++.++++++|+|+.|++... ... +.... ..
T Consensus 17 ~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~ 96 (206)
T cd01456 17 PQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFP 96 (206)
T ss_pred cCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccCCCC
Confidence 456889999999999998 5799999999999999999999999999999532 111 11111 00
Q ss_pred HHHHHHHHHHHhcccc-CCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcC-CCCCceEEE
Q 004349 385 KEAVERAHQWIGINFI-AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNG-GSICPRIYT 462 (759)
Q Consensus 385 ~~~i~~a~~~I~~~~~-~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~-~~~~~rI~t 462 (759)
..+.+.+.+.|+ .+. +.|+|+|..+|+.|.+.+. .+..+.|||+|||..++.....+.+++..... ...+++||+
T Consensus 97 ~~~~~~l~~~i~-~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~~ 173 (206)
T cd01456 97 SAQRSALDAALN-SLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVNV 173 (206)
T ss_pred cccHHHHHHHHH-hhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEEE
Confidence 024445555555 455 8899999999999999985 34447999999999876533334344333221 123689999
Q ss_pred EEecCCcCHHHHHHHHhhcCCEE-EEEcCC
Q 004349 463 FGIGSYCNHYFLRMLAMISRGYY-GAAYDL 491 (759)
Q Consensus 463 ~GiG~~~n~~lL~~LA~~~gG~~-~~v~d~ 491 (759)
||+|.+.+..+|+.||+.++|.| +.+.+.
T Consensus 174 igiG~~~~~~~l~~iA~~tgG~~~~~~~~~ 203 (206)
T cd01456 174 IDFGGDADRAELEAIAEATGGTYAYNQSDL 203 (206)
T ss_pred EEecCcccHHHHHHHHHhcCCeEecccccc
Confidence 99999999999999999999999 655443
No 12
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.77 E-value=1.5e-17 Score=196.11 Aligned_cols=164 Identities=22% Similarity=0.280 Sum_probs=126.3
Q ss_pred CCCCCceEEEEEcCCCCCCC-CChHHHHHHHHHHHH-hCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccc
Q 004349 322 RKVFKKDVIFIVDISGSMQG-KPLEDTKNALAVALS-KLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (759)
Q Consensus 322 ~~~~~~dvvfVlD~SGSM~g-~~i~~aK~al~~~L~-~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~ 399 (759)
.+...+.++||||+||||.+ +++..+|+|+..++. .++++|+++||.|++.+....+.....+....+...+.+. .
T Consensus 300 lq~~~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl~pLt~Its~~dr~aL~~~L~--~ 377 (863)
T TIGR00868 300 LKIRQRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIKNELIQITSSAERDALTANLP--T 377 (863)
T ss_pred cccCCceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEeeccccCCcHHHHHHHHHhhc--c
Confidence 34566789999999999986 589999999887764 5788999999999999887766544333344444444443 4
Q ss_pred cCCCCCchHHHHHHHHHHHhcCC--CCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHH
Q 004349 400 IAGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (759)
Q Consensus 400 ~~~GgT~i~~aL~~A~~~l~~~~--~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~L 477 (759)
.++|||+|+.||+.|++.+.... ...+.|||||||+.+........++ + .+++||+||+|.+.+. .|+.|
T Consensus 378 ~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~~~~l~~lk----~---~gVtI~TIg~G~dad~-~L~~I 449 (863)
T TIGR00868 378 AASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTISSCFEEVK----Q---SGAIIHTIALGPSAAK-ELEEL 449 (863)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCHHHHHHHHH----H---cCCEEEEEEeCCChHH-HHHHH
Confidence 58899999999999999997643 2357999999999875544333322 2 3589999999998765 47999
Q ss_pred HhhcCCEEEEEcCCchHH
Q 004349 478 AMISRGYYGAAYDLDSIE 495 (759)
Q Consensus 478 A~~~gG~~~~v~d~~~l~ 495 (759)
|+.+||.++++.+..++.
T Consensus 450 A~~TGG~~f~asd~~dl~ 467 (863)
T TIGR00868 450 SDMTGGLRFYASDQADNN 467 (863)
T ss_pred HHhcCCEEEEeCCHHHHH
Confidence 999999999998766543
No 13
>PRK13685 hypothetical protein; Provisional
Probab=99.77 E-value=1.8e-17 Score=180.34 Aligned_cols=171 Identities=19% Similarity=0.273 Sum_probs=132.4
Q ss_pred CCCceEEEEEcCCCCCCC-----CChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhcc
Q 004349 324 VFKKDVIFIVDISGSMQG-----KPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN 398 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g-----~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~ 398 (759)
..+.+++||+|+|+||.+ .+++.+|+++..+++.++++|++++|.|++++....+.+ .+.+.+..+++ .
T Consensus 86 ~~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~~~p~t--~d~~~l~~~l~----~ 159 (326)
T PRK13685 86 RNRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATVLVSPT--TNREATKNAID----K 159 (326)
T ss_pred CCCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceeecCCCC--CCHHHHHHHHH----h
Confidence 345689999999999986 589999999999999998899999999999998776654 36666666665 4
Q ss_pred ccCCCCCchHHHHHHHHHHHhc--------CCCCCCEEEEEeCCCCCChH------HHHHHHHHHHHcCCCCCceEEEEE
Q 004349 399 FIAGGSTNICAPLTKAVEMLTN--------SRGSIPIIFLVTDGAVEDER------QICDAMKSRLTNGGSICPRIYTFG 464 (759)
Q Consensus 399 ~~~~GgT~i~~aL~~A~~~l~~--------~~~~~~~IiLlTDG~~~~~~------~i~~~v~~~~~~~~~~~~rI~t~G 464 (759)
+..+|+|+++.+|..|++.+.. .....+.||++|||..+... ...+..+ ... ..+++||+||
T Consensus 160 l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~-~a~---~~gi~i~~Ig 235 (326)
T PRK13685 160 LQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAAR-TAK---DQGVPISTIS 235 (326)
T ss_pred CCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHH-HHH---HcCCeEEEEE
Confidence 5678999999999999998763 12234689999999975321 1112222 222 2368999999
Q ss_pred ecCC--------------cCHHHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHh
Q 004349 465 IGSY--------------CNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTR 504 (759)
Q Consensus 465 iG~~--------------~n~~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~ 504 (759)
+|+. .|...|+.||+.+||.|+.+.+.+++.+.+.++-+.
T Consensus 236 ~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~~~~~L~~if~~I~~~ 289 (326)
T PRK13685 236 FGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTAASLEELRAVYATLQQQ 289 (326)
T ss_pred ECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEcCCHHHHHHHHHHHHHH
Confidence 9974 478999999999999999999888777766665443
No 14
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.76 E-value=3.3e-17 Score=162.82 Aligned_cols=161 Identities=25% Similarity=0.295 Sum_probs=124.4
Q ss_pred CceEEEEEcCCCCCCCC------ChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccc
Q 004349 326 KKDVIFIVDISGSMQGK------PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g~------~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~ 399 (759)
+.+++|+||+|+||... +++.+|+++..++... ++++++|+.|+++.....+.. .+...+.++++.+. ..
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~~~~--~~~~~~~~~l~~l~-~~ 77 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRR-ENDRIGLVVFAGAAFTQAPLT--LDRESLKELLEDIK-IG 77 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEEcCCeeeccCCC--ccHHHHHHHHHHhh-hc
Confidence 47899999999999753 5788999888888764 689999999999887665543 25666777777665 34
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecC-----------C
Q 004349 400 IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGS-----------Y 468 (759)
Q Consensus 400 ~~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~-----------~ 468 (759)
..+|+|++..+|..+++++.......+.|||+|||..+........+.+...+ .+++||+||+|. .
T Consensus 78 ~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~---~gi~i~~i~ig~~~~~~~~~~~~~ 154 (180)
T cd01467 78 LAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAKN---KGVRIYTIGVGKSGSGPKPDGSTI 154 (180)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHH---CCCEEEEEEecCCCCCcCCCCccc
Confidence 56899999999999999997655556899999999876432211122222222 358999999998 4
Q ss_pred cCHHHHHHHHhhcCCEEEEEcCCch
Q 004349 469 CNHYFLRMLAMISRGYYGAAYDLDS 493 (759)
Q Consensus 469 ~n~~lL~~LA~~~gG~~~~v~d~~~ 493 (759)
.+...|+.||+.++|.|+++.+.++
T Consensus 155 ~~~~~l~~la~~tgG~~~~~~~~~~ 179 (180)
T cd01467 155 LDEDSLVEIADKTGGRIFRALDGFE 179 (180)
T ss_pred CCHHHHHHHHHhcCCEEEEecCccc
Confidence 7889999999999999999987764
No 15
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.75 E-value=2.7e-17 Score=164.79 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=120.2
Q ss_pred CceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC---------CCCeEEEEEECCceEEeecccc-ccCHHHHHHHHHHH
Q 004349 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---------PGDSFNIVAFNGETYLFSTSME-LATKEAVERAHQWI 395 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~---------~~d~f~Ii~F~~~~~~~~~~~~-~~t~~~i~~a~~~I 395 (759)
|.|++||||.|+||.+.+++.+|++++.+++.|. .+++++|+.|+++++...+... ..+...+.++++.+
T Consensus 2 ~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l~~~~~~~~~l~~~i~~l 81 (186)
T cd01480 2 PVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRDIRNYTSLKEAVDNL 81 (186)
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEecccccCCHHHHHHHHHhC
Confidence 5789999999999999999999999999998883 3679999999999877665542 24566666666644
Q ss_pred hccccCCCCCchHHHHHHHHHHHhc--CCCCCCEEEEEeCCCCCCh--HHHHHHHHHHHHcCCCCCceEEEEEecCCcCH
Q 004349 396 GINFIAGGSTNICAPLTKAVEMLTN--SRGSIPIIFLVTDGAVEDE--RQICDAMKSRLTNGGSICPRIYTFGIGSYCNH 471 (759)
Q Consensus 396 ~~~~~~~GgT~i~~aL~~A~~~l~~--~~~~~~~IiLlTDG~~~~~--~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~ 471 (759)
. ..+|+|+++.||+.|.+.+.. +++..+.|||+|||..+.. ....+.++. ++ ..+++||+||+|. .|.
T Consensus 82 ~---~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~-~~---~~gi~i~~vgig~-~~~ 153 (186)
T cd01480 82 E---YIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNE-AD---HLGIKIFFVAVGS-QNE 153 (186)
T ss_pred c---cCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHH-HH---HCCCEEEEEecCc-cch
Confidence 2 358999999999999999874 3456789999999987432 223333332 22 2368999999999 788
Q ss_pred HHHHHHHhhcCCEEEEEcCCc
Q 004349 472 YFLRMLAMISRGYYGAAYDLD 492 (759)
Q Consensus 472 ~lL~~LA~~~gG~~~~v~d~~ 492 (759)
..|+.||..+++.| ++.+..
T Consensus 154 ~~L~~IA~~~~~~~-~~~~~~ 173 (186)
T cd01480 154 EPLSRIACDGKSAL-YRENFA 173 (186)
T ss_pred HHHHHHHcCCcchh-hhcchh
Confidence 99999999999874 334433
No 16
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.74 E-value=2.7e-17 Score=160.85 Aligned_cols=164 Identities=32% Similarity=0.480 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCCCCC-----ChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCC
Q 004349 328 DVIFIVDISGSMQGK-----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (759)
Q Consensus 328 dvvfVlD~SGSM~g~-----~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~ 402 (759)
|++||+|.||||.+. +++.+|+++..+++.++ +++|+|+.|++......+.+ .+...+.++++.+.......
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~f~~~~~~~~~~t--~~~~~~~~~l~~~~~~~~~~ 77 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLP-GDRVGLVSFSDSSRTLSPLT--SDKDELKNALNKLSPQGMPG 77 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHT-TSEEEEEEESTSCEEEEEEE--SSHHHHHHHHHTHHHHG--S
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCC-CCEEEEEEeccccccccccc--ccHHHHHHHhhcccccccCc
Confidence 689999999999986 59999999999999975 78999999999887666653 58888888888777545678
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcC-HHHHHHHHhhc
Q 004349 403 GSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN-HYFLRMLAMIS 481 (759)
Q Consensus 403 GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n-~~lL~~LA~~~ 481 (759)
|+|++..||..|.+++.......+.|||+|||.++... .+.++. +. ..++++|+|++|...+ ...|+.||+.+
T Consensus 78 ~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~~~--~~~~~~-~~---~~~i~i~~v~~~~~~~~~~~l~~la~~t 151 (172)
T PF13519_consen 78 GGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNSSD--IEAAKA-LK---QQGITIYTVGIGSDSDANEFLQRLAEAT 151 (172)
T ss_dssp SS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHCHH--HHHHHH-HH---CTTEEEEEEEES-TT-EHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCcch--hHHHHH-HH---HcCCeEEEEEECCCccHHHHHHHHHHhc
Confidence 99999999999999998765567899999999876322 233333 33 2358999999998766 48999999999
Q ss_pred CCEEEEE-cCCchHHHHHHH
Q 004349 482 RGYYGAA-YDLDSIEIQMQK 500 (759)
Q Consensus 482 gG~~~~v-~d~~~l~~~l~~ 500 (759)
||.|+.+ .+.+++...+++
T Consensus 152 gG~~~~~~~~~~~l~~~~~~ 171 (172)
T PF13519_consen 152 GGRYFHVDNDPEDLDDAFQQ 171 (172)
T ss_dssp EEEEEEE-SSSHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHhc
Confidence 9999999 577777776654
No 17
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.74 E-value=8e-17 Score=157.90 Aligned_cols=153 Identities=20% Similarity=0.273 Sum_probs=119.3
Q ss_pred ceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC---CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCC
Q 004349 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~G 403 (759)
.|++||||.||||.+.+++.+|+++..++..|. .+++++|+.|+++++...+.....+.+.+.++++.+. ..+|
T Consensus 1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~g 77 (164)
T cd01472 1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLR---YIGG 77 (164)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCCCCCHHHHHHHHHhCc---CCCC
Confidence 479999999999999899999999999999886 3569999999999887766654446666666665443 2378
Q ss_pred CCchHHHHHHHHHHHhc-----CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHH
Q 004349 404 STNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA 478 (759)
Q Consensus 404 gT~i~~aL~~A~~~l~~-----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA 478 (759)
+|++..||..|.+.+.. .++..+.|||+|||..++... ..... +.+ .++++|+||+|.. +...|+.||
T Consensus 78 ~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~~--~~~~~-l~~---~gv~i~~ig~g~~-~~~~L~~ia 150 (164)
T cd01472 78 GTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDVE--EPAVE-LKQ---AGIEVFAVGVKNA-DEEELKQIA 150 (164)
T ss_pred CchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchHH--HHHHH-HHH---CCCEEEEEECCcC-CHHHHHHHH
Confidence 89999999999998875 234567899999998765432 22222 222 3589999999987 999999999
Q ss_pred hhcCCEEEEEc
Q 004349 479 MISRGYYGAAY 489 (759)
Q Consensus 479 ~~~gG~~~~v~ 489 (759)
..++|.|.+..
T Consensus 151 ~~~~~~~~~~~ 161 (164)
T cd01472 151 SDPKELYVFNV 161 (164)
T ss_pred CCCchheEEec
Confidence 99999777643
No 18
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.74 E-value=3.1e-17 Score=162.88 Aligned_cols=141 Identities=23% Similarity=0.363 Sum_probs=108.5
Q ss_pred CceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCC------CCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccc
Q 004349 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP------GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~------~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~ 399 (759)
..+|+||||+||||.+.+++.+|+++..+++.|.+ +++++||.|+++++...+.+.. .+ ..+. .+
T Consensus 3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~~l~~~---~~-----~~~~-~l 73 (176)
T cd01464 3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTPL---ES-----FQPP-RL 73 (176)
T ss_pred CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEecCCccH---Hh-----cCCC-cc
Confidence 45799999999999999999999999999998864 4689999999998877665321 11 1122 56
Q ss_pred cCCCCCchHHHHHHHHHHHhcCC---------CCCCEEEEEeCCCCCChHHHH-HHHHHHHHcCCCCCceEEEEEecCCc
Q 004349 400 IAGGSTNICAPLTKAVEMLTNSR---------GSIPIIFLVTDGAVEDERQIC-DAMKSRLTNGGSICPRIYTFGIGSYC 469 (759)
Q Consensus 400 ~~~GgT~i~~aL~~A~~~l~~~~---------~~~~~IiLlTDG~~~~~~~i~-~~v~~~~~~~~~~~~rI~t~GiG~~~ 469 (759)
.++|||+++.||+.|++.+.... ...+.|||+|||.+++..... +.+++ ....+++||+||+|.++
T Consensus 74 ~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~----~~~~~~~i~~igiG~~~ 149 (176)
T cd01464 74 TASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKE----ARDSKGRIVACAVGPKA 149 (176)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHh----hcccCCcEEEEEecccc
Confidence 78899999999999999985421 224689999999987654322 23332 22335899999999999
Q ss_pred CHHHHHHHHh
Q 004349 470 NHYFLRMLAM 479 (759)
Q Consensus 470 n~~lL~~LA~ 479 (759)
|..+|+.||.
T Consensus 150 ~~~~L~~ia~ 159 (176)
T cd01464 150 DLDTLKQITE 159 (176)
T ss_pred CHHHHHHHHC
Confidence 9999999986
No 19
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.73 E-value=9.7e-17 Score=159.65 Aligned_cols=156 Identities=24% Similarity=0.330 Sum_probs=115.8
Q ss_pred EEEEEcCCCCCCCC-ChHHHHHHHHHHHHh-CCCCCeEEEEEECCc-eEEeeccccccCHHHHHHHHHHHhccccCCCCC
Q 004349 329 VIFIVDISGSMQGK-PLEDTKNALAVALSK-LDPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGINFIAGGST 405 (759)
Q Consensus 329 vvfVlD~SGSM~g~-~i~~aK~al~~~L~~-L~~~d~f~Ii~F~~~-~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT 405 (759)
++||||+||||.+. +++.+|+++..++.. +.++|+++|+.|+++ .+...+.+. +...+ .+.++ .+..+|+|
T Consensus 3 v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t~--~~~~~---~~~l~-~l~~~G~T 76 (178)
T cd01451 3 VIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTR--SVELA---KRRLA-RLPTGGGT 76 (178)
T ss_pred EEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCCC--CHHHH---HHHHH-hCCCCCCC
Confidence 78999999999987 999999999998864 567999999999875 554444332 33433 34554 56778999
Q ss_pred chHHHHHHHHHHH-hcC--CCCCCEEEEEeCCCCCChH----HHHHHHHHHHHcCCCCCceEEEEEecCC-cCHHHHHHH
Q 004349 406 NICAPLTKAVEML-TNS--RGSIPIIFLVTDGAVEDER----QICDAMKSRLTNGGSICPRIYTFGIGSY-CNHYFLRML 477 (759)
Q Consensus 406 ~i~~aL~~A~~~l-~~~--~~~~~~IiLlTDG~~~~~~----~i~~~v~~~~~~~~~~~~rI~t~GiG~~-~n~~lL~~L 477 (759)
++..+|..|++.+ ... .+..+.|||+|||..+... .....+.+.+.+ .++.+++|++|.+ .+..+|+.|
T Consensus 77 ~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~---~gi~v~~I~~~~~~~~~~~l~~i 153 (178)
T cd01451 77 PLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRA---RGISALVIDTEGRPVRRGLAKDL 153 (178)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHh---cCCcEEEEeCCCCccCccHHHHH
Confidence 9999999999988 221 2335799999999976321 121222233332 3478999999864 578899999
Q ss_pred HhhcCCEEEEEcCCch
Q 004349 478 AMISRGYYGAAYDLDS 493 (759)
Q Consensus 478 A~~~gG~~~~v~d~~~ 493 (759)
|+.+||.|+++.+.+.
T Consensus 154 A~~tgG~~~~~~d~~~ 169 (178)
T cd01451 154 ARALGGQYVRLPDLSA 169 (178)
T ss_pred HHHcCCeEEEcCcCCH
Confidence 9999999999988763
No 20
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.73 E-value=1e-16 Score=160.00 Aligned_cols=163 Identities=16% Similarity=0.228 Sum_probs=123.2
Q ss_pred ceEEEEEcCCCCCCC-----CChHHHHHHHHHHHHhC---CCCCeEEEEEE-CCceEEeeccccccCHHHHHHHHHHHhc
Q 004349 327 KDVIFIVDISGSMQG-----KPLEDTKNALAVALSKL---DPGDSFNIVAF-NGETYLFSTSMELATKEAVERAHQWIGI 397 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g-----~~i~~aK~al~~~L~~L---~~~d~f~Ii~F-~~~~~~~~~~~~~~t~~~i~~a~~~I~~ 397 (759)
++++|+||.|+||.. .+++.+|.++..|++.+ .+++++++|.| ++.++...|.+. +.+.+...++.+
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~--D~~~~~~~L~~~-- 79 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTG--NPRKHIQALKTA-- 79 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCC--CHHHHHHHhhcc--
Confidence 689999999999985 58999999999999864 57899999999 788888888754 444444444322
Q ss_pred cccCCCCCchHHHHHHHHHHHhcCCC--CCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHH
Q 004349 398 NFIAGGSTNICAPLTKAVEMLTNSRG--SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (759)
Q Consensus 398 ~~~~~GgT~i~~aL~~A~~~l~~~~~--~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~ 475 (759)
+...|||++..||+.|++.+...+. ..+.|||+|||...+...+.+ +.+.+++ .+++|++||+|.. ..+|+
T Consensus 80 -~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~-~~~~l~~---~~I~v~~IgiG~~--~~~L~ 152 (183)
T cd01453 80 -RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYE-TIDKLKK---ENIRVSVIGLSAE--MHICK 152 (183)
T ss_pred -cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHH-HHHHHHH---cCcEEEEEEechH--HHHHH
Confidence 3557889999999999999975332 245788899987654443323 2333332 2589999999964 57899
Q ss_pred HHHhhcCCEEEEEcCCchHHHHHHH
Q 004349 476 MLAMISRGYYGAAYDLDSIEIQMQK 500 (759)
Q Consensus 476 ~LA~~~gG~~~~v~d~~~l~~~l~~ 500 (759)
.||+.+||.|+.+.+.+++.+.+.+
T Consensus 153 ~ia~~tgG~~~~~~~~~~l~~~~~~ 177 (183)
T cd01453 153 EICKATNGTYKVILDETHLKELLLE 177 (183)
T ss_pred HHHHHhCCeeEeeCCHHHHHHHHHh
Confidence 9999999999999887777654444
No 21
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.72 E-value=2.7e-16 Score=157.47 Aligned_cols=173 Identities=16% Similarity=0.230 Sum_probs=122.4
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC-CCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCC
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL-DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L-~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~G 403 (759)
.+.|++||||.||||.+. +...+++++.+++.+ .+++||+|+.|+++++...+... ....+.++++.+. .+.++|
T Consensus 3 ~~~Dvv~llD~SgSm~~~-~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~l~~--~~~~~~~~l~~l~-~~~~~g 78 (185)
T cd01474 3 GHFDLYFVLDKSGSVAAN-WIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTD--DSSAIIKGLEVLK-KVTPSG 78 (185)
T ss_pred CceeEEEEEeCcCchhhh-HHHHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEeccc--cHHHHHHHHHHHh-ccCCCC
Confidence 357999999999999874 445557777777664 46799999999999987777644 2335566666676 556789
Q ss_pred CCchHHHHHHHHHHHhcC-C-C--CCCEEEEEeCCCCCC--hHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHH
Q 004349 404 STNICAPLTKAVEMLTNS-R-G--SIPIIFLVTDGAVED--ERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (759)
Q Consensus 404 gT~i~~aL~~A~~~l~~~-~-~--~~~~IiLlTDG~~~~--~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~L 477 (759)
+|+++.||+.|.+.+... . + ..+.|||+|||..++ ........+ .+++ .++.||+||+| ..|...|+.|
T Consensus 79 ~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a~-~l~~---~gv~i~~vgv~-~~~~~~L~~i 153 (185)
T cd01474 79 QTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAK-LSRK---LGAIVYCVGVT-DFLKSQLINI 153 (185)
T ss_pred CCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHHH-HHHH---cCCEEEEEeec-hhhHHHHHHH
Confidence 999999999999877421 1 1 236899999999842 222222222 2222 35899999995 4688999999
Q ss_pred HhhcCCEEEEEcCCchHHHHHHHHHHhhh
Q 004349 478 AMISRGYYGAAYDLDSIEIQMQKLFTRGF 506 (759)
Q Consensus 478 A~~~gG~~~~v~d~~~l~~~l~~~l~~~~ 506 (759)
|...++.|....+.+.+...+..+.+++.
T Consensus 154 A~~~~~~f~~~~~~~~l~~~~~~~~~~~C 182 (185)
T cd01474 154 ADSKEYVFPVTSGFQALSGIIESVVKKAC 182 (185)
T ss_pred hCCCCeeEecCccHHHHHHHHHHHHHhhc
Confidence 99875444345566777777777666554
No 22
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.72 E-value=1.7e-16 Score=158.85 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=115.9
Q ss_pred eEEEEEcCCCCCCCCC-hHHHHHHHHHHHHhCC---CCCeEEEEEECCceEEeeccccc--cCHHHHHHHHHHHhccccC
Q 004349 328 DVIFIVDISGSMQGKP-LEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 328 dvvfVlD~SGSM~g~~-i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~--~t~~~i~~a~~~I~~~~~~ 401 (759)
||+||+|.||||.+.. ++.+|+++..+++.+. ++.+++||.|++.++...+.... .+...+..+++.+......
T Consensus 2 Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~ 81 (186)
T cd01471 2 DLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLSLYYP 81 (186)
T ss_pred cEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCccccchHHHHHHHHHHHhCcCC
Confidence 7999999999999887 9999999999999875 45699999999998876554332 2344444466655434457
Q ss_pred CCCCchHHHHHHHHHHHhcC----CCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHH
Q 004349 402 GGSTNICAPLTKAVEMLTNS----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (759)
Q Consensus 402 ~GgT~i~~aL~~A~~~l~~~----~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~L 477 (759)
+|+|++..||..|.+.+... ++..+.|||+|||..++........++. .+ .++.+++||+|.+.|..+|+.|
T Consensus 82 ~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~a~~l-~~---~gv~v~~igiG~~~d~~~l~~i 157 (186)
T cd01471 82 NGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTLKEARKL-RE---RGVIIAVLGVGQGVNHEENRSL 157 (186)
T ss_pred CCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcchhHHHHHH-HH---CCCEEEEEEeehhhCHHHHHHh
Confidence 89999999999999988652 2345689999999987655544444433 22 3578999999999999999999
Q ss_pred Hhhc
Q 004349 478 AMIS 481 (759)
Q Consensus 478 A~~~ 481 (759)
|...
T Consensus 158 a~~~ 161 (186)
T cd01471 158 VGCD 161 (186)
T ss_pred cCCC
Confidence 9876
No 23
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.71 E-value=2.8e-16 Score=162.17 Aligned_cols=171 Identities=19% Similarity=0.223 Sum_probs=130.6
Q ss_pred CceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCC---CCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCC
Q 004349 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~ 402 (759)
|.||+||||.|+||.+.+++++|+++..+++.|.. .+||+||.|+++++...++....+.+.+.++++.+. ..+
T Consensus 2 ~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~~~~~~l~~~i~~i~---~~~ 78 (224)
T cd01475 2 PTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRME---YLE 78 (224)
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEecccccCCHHHHHHHHHhCc---CCC
Confidence 67999999999999999999999999999998853 569999999999988777765567777888887664 346
Q ss_pred CCCchHHHHHHHHHHHhc-----CCCC---CCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHH
Q 004349 403 GSTNICAPLTKAVEMLTN-----SRGS---IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL 474 (759)
Q Consensus 403 GgT~i~~aL~~A~~~l~~-----~~~~---~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL 474 (759)
|+|+++.||+.+++.+-. +++. .+.+||+|||..++. +.+.+ +.+++ .+++||+||+|+ .+...|
T Consensus 79 ~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~--~~~~a-~~lk~---~gv~i~~VgvG~-~~~~~L 151 (224)
T cd01475 79 TGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDD--VSEVA-AKARA---LGIEMFAVGVGR-ADEEEL 151 (224)
T ss_pred CCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCccc--HHHHH-HHHHH---CCcEEEEEeCCc-CCHHHH
Confidence 899999999999876422 1222 568899999997653 22222 22332 358999999998 488899
Q ss_pred HHHHhhcC-CEEEEEcCCchHHHHHHHHHHhhh
Q 004349 475 RMLAMISR-GYYGAAYDLDSIEIQMQKLFTRGF 506 (759)
Q Consensus 475 ~~LA~~~g-G~~~~v~d~~~l~~~l~~~l~~~~ 506 (759)
+.||..++ ++++.+.+.++++....++...+.
T Consensus 152 ~~ias~~~~~~~f~~~~~~~l~~~~~~l~~~~C 184 (224)
T cd01475 152 REIASEPLADHVFYVEDFSTIEELTKKFQGKIC 184 (224)
T ss_pred HHHhCCCcHhcEEEeCCHHHHHHHhhhcccccC
Confidence 99998765 567778777777766666555544
No 24
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.70 E-value=3.6e-16 Score=157.10 Aligned_cols=159 Identities=14% Similarity=0.157 Sum_probs=119.3
Q ss_pred CCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCC---------CCeEEEEEECCceEEeeccccccCHHHHHHHHH
Q 004349 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---------GDSFNIVAFNGETYLFSTSMELATKEAVERAHQ 393 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~---------~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~ 393 (759)
...+.|++||||.|+||...+++.+|+++..++..+.. ++|++||.|+++++...++....+...+.++++
T Consensus 16 ~~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~d~~~~~~~~~ai~ 95 (193)
T cd01477 16 KNLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDLQSFDDLYSQIQ 95 (193)
T ss_pred ccceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecccccCHHHHHHHHH
Confidence 35689999999999999988999999999988876543 479999999999998888765556677777666
Q ss_pred HHhccccCCCCCchHHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCCCh-HHHHHHHHHHHHcCCCCCceEEEEEecC
Q 004349 394 WIGINFIAGGSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDE-RQICDAMKSRLTNGGSICPRIYTFGIGS 467 (759)
Q Consensus 394 ~I~~~~~~~GgT~i~~aL~~A~~~l~~~-----~~~~~~IiLlTDG~~~~~-~~i~~~v~~~~~~~~~~~~rI~t~GiG~ 467 (759)
..-......|||++..||+.|.+++... ++..+++||||||..+.. ..... +.+.+++ .++.||+||||.
T Consensus 96 ~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~-~a~~l~~---~GI~i~tVGiG~ 171 (193)
T cd01477 96 GSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRP-IAARLKS---TGIAIITVAFTQ 171 (193)
T ss_pred HHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHH-HHHHHHH---CCCEEEEEEeCC
Confidence 4211344668999999999999998742 234578999999864322 22222 2333333 358999999999
Q ss_pred CcCHHHHHHHHhhcCCEE
Q 004349 468 YCNHYFLRMLAMISRGYY 485 (759)
Q Consensus 468 ~~n~~lL~~LA~~~gG~~ 485 (759)
+.|...++.|++...+.+
T Consensus 172 ~~d~~~~~~L~~ias~~~ 189 (193)
T cd01477 172 DESSNLLDKLGKIASPGM 189 (193)
T ss_pred CCCHHHHHHHHHhcCCCC
Confidence 989888888888765444
No 25
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.70 E-value=7.9e-16 Score=165.56 Aligned_cols=176 Identities=20% Similarity=0.229 Sum_probs=133.1
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHh-CCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhcc-----
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN----- 398 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~-L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~----- 398 (759)
.|.+++||||.||||.+ ++..+|+++..+++. +.++|+++|+.|+++.....+.+ .+.+.+.++++.+...
T Consensus 52 ~p~~vvlvlD~SgSM~~-~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~~t--~~~~~l~~~l~~l~~~~~~~~ 128 (296)
T TIGR03436 52 LPLTVGLVIDTSGSMRN-DLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQDFT--SDPRLLEAALNRLKPPLRTDY 128 (296)
T ss_pred CCceEEEEEECCCCchH-HHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeecCC--CCHHHHHHHHHhccCCCcccc
Confidence 47889999999999986 689999999999987 78899999999999988776654 3667777777765410
Q ss_pred ------ccCCCCCchHHHHHHHH-HHHhcCCC---CCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCC
Q 004349 399 ------FIAGGSTNICAPLTKAV-EMLTNSRG---SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY 468 (759)
Q Consensus 399 ------~~~~GgT~i~~aL~~A~-~~l~~~~~---~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~ 468 (759)
....|+|+++.||..|. +++..... ..+.||++|||..+........+.+.+.+ .++.||+||+|..
T Consensus 129 ~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~~---~~v~vy~I~~~~~ 205 (296)
T TIGR03436 129 NSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQR---ADVAIYSIDARGL 205 (296)
T ss_pred ccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHHH---cCCEEEEeccCcc
Confidence 12389999999987664 44433221 35789999999876544333333333332 3589999999842
Q ss_pred -------------cCHHHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHhhhc
Q 004349 469 -------------CNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFS 507 (759)
Q Consensus 469 -------------~n~~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~~~ 507 (759)
.+...|+.||..+||.++++ +..++...+.++...+.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~-~~~~l~~~f~~i~~~~~~ 256 (296)
T TIGR03436 206 RAPDLGAGAKAGLGGPEALERLAEETGGRAFYV-NSNDLDGAFAQIAEELRS 256 (296)
T ss_pred ccCCcccccccCCCcHHHHHHHHHHhCCeEecc-cCccHHHHHHHHHHHHhh
Confidence 35789999999999999988 888898888887776654
No 26
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.70 E-value=4.6e-16 Score=154.70 Aligned_cols=160 Identities=23% Similarity=0.286 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCC---CCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCCC
Q 004349 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS 404 (759)
Q Consensus 328 dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~Gg 404 (759)
|++||||.|+||....++.+|+++..+++.|.. +.||+|+.|+++++...++....+..++.++++.+. ..+|+
T Consensus 2 Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~i~~~~---~~~g~ 78 (177)
T cd01469 2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHIS---QLLGL 78 (177)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccCCHHHHHHHHHhCc---cCCCC
Confidence 799999999999988999999999999998864 579999999999987766655556666666666443 45788
Q ss_pred CchHHHHHHHHHHHhc-----CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcC----HHHHH
Q 004349 405 TNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN----HYFLR 475 (759)
Q Consensus 405 T~i~~aL~~A~~~l~~-----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n----~~lL~ 475 (759)
|+++.||+.|.+.+-. +++..+.+||+|||..++.....+ +.+.+++ .++.||+||+|...+ ...|+
T Consensus 79 T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~~~-~~~~~k~---~gv~v~~Vgvg~~~~~~~~~~~L~ 154 (177)
T cd01469 79 TNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLLKD-VIPQAER---EGIIRYAIGVGGHFQRENSREELK 154 (177)
T ss_pred ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccccHH-HHHHHHH---CCcEEEEEEecccccccccHHHHH
Confidence 9999999999998622 234567899999999876543322 2223332 358999999998765 68899
Q ss_pred HHHhhcCC-EEEEEcCCchH
Q 004349 476 MLAMISRG-YYGAAYDLDSI 494 (759)
Q Consensus 476 ~LA~~~gG-~~~~v~d~~~l 494 (759)
.||...++ +++.+.+.+++
T Consensus 155 ~ias~p~~~h~f~~~~~~~l 174 (177)
T cd01469 155 TIASKPPEEHFFNVTDFAAL 174 (177)
T ss_pred HHhcCCcHHhEEEecCHHHh
Confidence 99998875 45556665544
No 27
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.66 E-value=4.3e-15 Score=166.89 Aligned_cols=182 Identities=19% Similarity=0.241 Sum_probs=138.4
Q ss_pred CCceEEEEEcCCCCCCCCCh-HHHHHHHHHHHHhCCC-CC--eEEEEEECCceEEeeccccc--cCHHHHHHHHHHHhcc
Q 004349 325 FKKDVIFIVDISGSMQGKPL-EDTKNALAVALSKLDP-GD--SFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGIN 398 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i-~~aK~al~~~L~~L~~-~d--~f~Ii~F~~~~~~~~~~~~~--~t~~~i~~a~~~I~~~ 398 (759)
...+++||||.|+||.-..+ +.+|.++..++..+.. .| +++|+.|++..+.+.+.... .+.+.+..++..+...
T Consensus 41 ~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~sL~~~ 120 (576)
T PTZ00441 41 EEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDKEQALIIVKSLRKT 120 (576)
T ss_pred CCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccccHHHHHHHHHHHHhh
Confidence 57899999999999975555 7899999999998853 34 56669999998876665432 2444555666655444
Q ss_pred ccCCCCCchHHHHHHHHHHHhcC---CCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHH
Q 004349 399 FIAGGSTNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (759)
Q Consensus 399 ~~~~GgT~i~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~ 475 (759)
...+|+|++..||..+.+.+... .+..+.|||||||..++.....+.++. ++. .++.||+||||.+.+..+|+
T Consensus 121 ~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~dvleaAq~-LR~---~GVeI~vIGVG~g~n~e~Lr 196 (576)
T PTZ00441 121 YLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKYRALEESRK-LKD---RNVKLAVIGIGQGINHQFNR 196 (576)
T ss_pred ccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcccHHHHHHH-HHH---CCCEEEEEEeCCCcCHHHHH
Confidence 56789999999999999988643 234579999999998654444444433 332 35889999999999999999
Q ss_pred HHH----hhcCCEEEEEcCCchHHHHHHHHHHhhhcceE
Q 004349 476 MLA----MISRGYYGAAYDLDSIEIQMQKLFTRGFSSVL 510 (759)
Q Consensus 476 ~LA----~~~gG~~~~v~d~~~l~~~l~~~l~~~~~p~l 510 (759)
.|| ..+++.++.+.+.+++...+..+++++...+-
T Consensus 197 lIAgC~p~~g~c~~Y~vadf~eL~~ivk~LikkVC~eve 235 (576)
T PTZ00441 197 LLAGCRPREGKCKFYSDADWEEAKNLIKPFIAKVCTEVE 235 (576)
T ss_pred HHhccCCCCCCCceEEeCCHHHHHHHHHHHHHHhccccc
Confidence 999 44667888888888898888888888876653
No 28
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.66 E-value=3.4e-15 Score=146.52 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=112.8
Q ss_pred ceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC---CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCC
Q 004349 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~G 403 (759)
.|++||+|.|+||.+..++.+|+++..+++.+. ++++++|+.|++++....+.....+.+.+.++++.+ ...+|
T Consensus 1 ~Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~~~~~~~~l~~~l~~~---~~~~g 77 (164)
T cd01482 1 ADIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNL---PYKGG 77 (164)
T ss_pred CCEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecCCCCCHHHHHHHHHhC---cCCCC
Confidence 379999999999998899999999999998874 568999999999987666554434544444444433 23689
Q ss_pred CCchHHHHHHHHHHHhc-----CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHH
Q 004349 404 STNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA 478 (759)
Q Consensus 404 gT~i~~aL~~A~~~l~~-----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA 478 (759)
+|+++.||+.+.+.+.. +++..+.|||+|||..++.. .+ +.+.+++ .++.+|+||+|.. +...|+.||
T Consensus 78 ~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~~--~~-~a~~lk~---~gi~i~~ig~g~~-~~~~L~~ia 150 (164)
T cd01482 78 NTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDDV--EL-PARVLRN---LGVNVFAVGVKDA-DESELKMIA 150 (164)
T ss_pred CChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCchH--HH-HHHHHHH---CCCEEEEEecCcC-CHHHHHHHh
Confidence 99999999999876532 23346789999999986532 12 2223332 3589999999984 688999999
Q ss_pred hhcCCEE-EEEc
Q 004349 479 MISRGYY-GAAY 489 (759)
Q Consensus 479 ~~~gG~~-~~v~ 489 (759)
..+...+ +.+.
T Consensus 151 ~~~~~~~~~~~~ 162 (164)
T cd01482 151 SKPSETHVFNVA 162 (164)
T ss_pred CCCchheEEEcC
Confidence 9876544 4443
No 29
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.64 E-value=4.8e-15 Score=143.33 Aligned_cols=145 Identities=23% Similarity=0.247 Sum_probs=108.0
Q ss_pred ceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC-CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCCCC
Q 004349 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST 405 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT 405 (759)
++++|+||+||||.+.+++.+|.++..++..+. .+++++|+.|+++..... . ....++.++++++. .+.++|||
T Consensus 1 ~~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~~-~---~~~~~~~~~~~~l~-~~~~~ggT 75 (152)
T cd01462 1 GPVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTKI-V---DKTDDLEEPVEFLS-GVQLGGGT 75 (152)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEEe-c---CCcccHHHHHHHHh-cCCCCCCc
Confidence 479999999999999889999999888888765 488999999999943221 1 13455667777776 56789999
Q ss_pred chHHHHHHHHHHHhcCCCCCCEEEEEeCCC-CCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhh
Q 004349 406 NICAPLTKAVEMLTNSRGSIPIIFLVTDGA-VEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480 (759)
Q Consensus 406 ~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~-~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~ 480 (759)
++..+|..+++.+.........||++|||. ........ ...+... ..+++||+||+|++.|..+++..|+.
T Consensus 76 ~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~~~~~~-~~~~~~~---~~~~~v~~~~~g~~~~~~~~~~~~~~ 147 (152)
T cd01462 76 DINKALRYALELIERRDPRKADIVLITDGYEGGVSDELL-REVELKR---SRVARFVALALGDHGNPGYDRISAED 147 (152)
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCHHHH-HHHHHHH---hcCcEEEEEEecCCCCchHHHHhhhh
Confidence 999999999999876444457899999996 33333332 1122221 22579999999999888877666554
No 30
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.64 E-value=4.3e-15 Score=143.93 Aligned_cols=149 Identities=21% Similarity=0.309 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCC---CCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCC-C
Q 004349 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG-G 403 (759)
Q Consensus 328 dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~-G 403 (759)
||+||+|+||||.+.+++.+++++..++..+.. +++++|+.|++......+.....+...+.++++.+. ... |
T Consensus 2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~ 78 (161)
T cd01450 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLK---YLGGG 78 (161)
T ss_pred cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCCCHHHHHHHHHhcc---cCCCC
Confidence 799999999999988999999999999988764 789999999998876655543334555555555332 233 4
Q ss_pred CCchHHHHHHHHHHHhcCC----CCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHh
Q 004349 404 STNICAPLTKAVEMLTNSR----GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM 479 (759)
Q Consensus 404 gT~i~~aL~~A~~~l~~~~----~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~ 479 (759)
+|++..||..+.+.+.... ...+.|||+|||..++.....+.++.. ++ .++++++||+|. .+...|+.||.
T Consensus 79 ~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~-~~---~~v~v~~i~~g~-~~~~~l~~la~ 153 (161)
T cd01450 79 GTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAKL-KD---EGIKVFVVGVGP-ADEEELREIAS 153 (161)
T ss_pred CccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHHH-HH---CCCEEEEEeccc-cCHHHHHHHhC
Confidence 9999999999999997653 556799999999987654444433333 22 258999999999 78999999999
Q ss_pred hcCCE
Q 004349 480 ISRGY 484 (759)
Q Consensus 480 ~~gG~ 484 (759)
.+++.
T Consensus 154 ~~~~~ 158 (161)
T cd01450 154 CPSER 158 (161)
T ss_pred CCCCC
Confidence 98443
No 31
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.63 E-value=2e-14 Score=144.64 Aligned_cols=172 Identities=16% Similarity=0.161 Sum_probs=122.4
Q ss_pred eEEEEEcCCCCCCCCChH-HHHHHHHHHHHhCCC---CCeEEEEEECCceEEeeccccc--cCHHHHHHHHHHHhccccC
Q 004349 328 DVIFIVDISGSMQGKPLE-DTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 328 dvvfVlD~SGSM~g~~i~-~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~--~t~~~i~~a~~~I~~~~~~ 401 (759)
|++|+||.|+||....++ .+|+++..+++.|.. +.|++|+.|++.++...++... .+...+.++++.+......
T Consensus 2 Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~ 81 (192)
T cd01473 2 DLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKNSYRS 81 (192)
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcccccCHHHHHHHHHHHHhccCC
Confidence 799999999999877777 489999999998763 5799999999999876665432 3456666777666422345
Q ss_pred CCCCchHHHHHHHHHHHhcCCC----CCCEEEEEeCCCCCCh--HHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHH
Q 004349 402 GGSTNICAPLTKAVEMLTNSRG----SIPIIFLVTDGAVEDE--RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (759)
Q Consensus 402 ~GgT~i~~aL~~A~~~l~~~~~----~~~~IiLlTDG~~~~~--~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~ 475 (759)
+|||++..||+.|.+.+....+ .++.+||||||..++. ..+.+.. +.+++ .++.+|+||||.. +..-|+
T Consensus 82 ~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a-~~lk~---~gV~i~~vGiG~~-~~~el~ 156 (192)
T cd01473 82 GGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDIS-LLYKE---ENVKLLVVGVGAA-SENKLK 156 (192)
T ss_pred CCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHH-HHHHH---CCCEEEEEEeccc-cHHHHH
Confidence 7999999999999998854322 3678999999998653 2233322 23332 3589999999985 677899
Q ss_pred HHHhhc--CCE--EEEEcCCchHHHHHHHHHHh
Q 004349 476 MLAMIS--RGY--YGAAYDLDSIEIQMQKLFTR 504 (759)
Q Consensus 476 ~LA~~~--gG~--~~~v~d~~~l~~~l~~~l~~ 504 (759)
.||... .+. +++..+.+.+......+..+
T Consensus 157 ~ia~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~ 189 (192)
T cd01473 157 LLAGCDINNDNCPNVIKTEWNNLNGISKFLTDK 189 (192)
T ss_pred HhcCCCCCCCCCCeEEecchhhHHHHHHHHHhh
Confidence 999852 322 33333466666655554443
No 32
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.63 E-value=5.5e-15 Score=145.78 Aligned_cols=167 Identities=27% Similarity=0.346 Sum_probs=124.6
Q ss_pred eEEEEEcCCCCCCCCChHHHHHHHHHHHHhC---CCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCCC
Q 004349 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS 404 (759)
Q Consensus 328 dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~Gg 404 (759)
||+||||.|+||.+..++.+|+++..+++.+ ..+.||+|+.|++......+.....+...+..++ .......+|+
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~g~ 78 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDYQSKNDLLNAI--NDSIPSSGGG 78 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSHSSHHHHHHHH--HTTGGCCBSS
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecccccccccccccccccccccc--cccccccchh
Confidence 6999999999999989999999999999976 3567999999999998776665545556666665 1224567899
Q ss_pred CchHHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHh
Q 004349 405 TNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM 479 (759)
Q Consensus 405 T~i~~aL~~A~~~l~~~-----~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~ 479 (759)
|++..||+.|.+.+... ++..+.+|++|||..++.............. .++.+++||+ ...+...|+.|+.
T Consensus 79 t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~---~~i~~~~ig~-~~~~~~~l~~la~ 154 (178)
T PF00092_consen 79 TNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKS---NGIKVIAIGI-DNADNEELRELAS 154 (178)
T ss_dssp B-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHH---CTEEEEEEEE-SCCHHHHHHHHSH
T ss_pred hhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHh---cCcEEEEEec-CcCCHHHHHHHhC
Confidence 99999999999998654 4556799999999998775444433333322 2455666666 3678999999996
Q ss_pred hc--CCEEEEEcCCchHHHHHHH
Q 004349 480 IS--RGYYGAAYDLDSIEIQMQK 500 (759)
Q Consensus 480 ~~--gG~~~~v~d~~~l~~~l~~ 500 (759)
.+ .++++++.+..++.+..++
T Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~ 177 (178)
T PF00092_consen 155 CPTSEGHVFYLADFSDLSQIIQQ 177 (178)
T ss_dssp SSTCHHHEEEESSHHHHHHHHHH
T ss_pred CCCCCCcEEEcCCHHHHHHHHhc
Confidence 64 4778888888877765544
No 33
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.61 E-value=2e-14 Score=140.56 Aligned_cols=148 Identities=18% Similarity=0.278 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCC---CCeEEEEEECC--ceEEeeccccccCHHHHHHHHHHHhccccCC
Q 004349 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNG--ETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (759)
Q Consensus 328 dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~--~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~ 402 (759)
|++||+|.|+||.+ .++..|+++..++..|.. .++++|+.|++ ......+.....+.+.+.+++..+. ..+
T Consensus 2 dv~~llD~S~Sm~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~---~~g 77 (163)
T cd01476 2 DLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLR---FIG 77 (163)
T ss_pred CEEEEEeCCcchhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCc---cCC
Confidence 79999999999986 688899999999988864 78999999999 4555555443335555555555332 347
Q ss_pred CCCchHHHHHHHHHHHhc----CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCC--cCHHHHHH
Q 004349 403 GSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY--CNHYFLRM 476 (759)
Q Consensus 403 GgT~i~~aL~~A~~~l~~----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~--~n~~lL~~ 476 (759)
|+|++..||+.|.+++.. +++..+.+||+|||..++... .. .+.+.. ..++.+|+||+|+. .|...|+.
T Consensus 78 g~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~--~~-~~~l~~--~~~v~v~~vg~g~~~~~~~~~L~~ 152 (163)
T cd01476 78 GTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDPE--KQ-ARILRA--VPNIETFAVGTGDPGTVDTEELHS 152 (163)
T ss_pred CCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCchH--HH-HHHHhh--cCCCEEEEEECCCccccCHHHHHH
Confidence 889999999999999852 223347899999998864421 11 222222 24589999999998 89999999
Q ss_pred HHhhcCCE
Q 004349 477 LAMISRGY 484 (759)
Q Consensus 477 LA~~~gG~ 484 (759)
||......
T Consensus 153 ia~~~~~~ 160 (163)
T cd01476 153 ITGNEDHI 160 (163)
T ss_pred HhCCCccc
Confidence 97766543
No 34
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.61 E-value=9.6e-15 Score=144.68 Aligned_cols=141 Identities=19% Similarity=0.298 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCCCC-CChHHHHHHHHHHHHhCCC-CCeEEEEEECCce--E---EeeccccccCHHHHHHHHHHHhcccc
Q 004349 328 DVIFIVDISGSMQG-KPLEDTKNALAVALSKLDP-GDSFNIVAFNGET--Y---LFSTSMELATKEAVERAHQWIGINFI 400 (759)
Q Consensus 328 dvvfVlD~SGSM~g-~~i~~aK~al~~~L~~L~~-~d~f~Ii~F~~~~--~---~~~~~~~~~t~~~i~~a~~~I~~~~~ 400 (759)
.++||||+||||.+ .+++.+|+++..++..+.. +|+|+|+.|++.. . .+... ...+.....+..+.+. .+.
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~ 79 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKI-KDFDESLHERARKRLA-ALS 79 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEe-cCcccccchhHHHHHH-ccC
Confidence 48999999999998 5999999999999888875 9999999999873 1 12211 1122221123444554 567
Q ss_pred CCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChHH------HHHHHHHHHHcCCCCCceEEEEEecCCcC
Q 004349 401 AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQ------ICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (759)
Q Consensus 401 ~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~------i~~~v~~~~~~~~~~~~rI~t~GiG~~~n 470 (759)
++|+|++..||+.+.+.+...+...+.||++|||.+++... ..+...+...+....++++|+||+|++.+
T Consensus 80 ~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~ 155 (174)
T cd01454 80 PGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDAT 155 (174)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCccc
Confidence 78899999999999999987666778999999999864321 11111111211223468999999999876
No 35
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.57 E-value=5.3e-14 Score=162.51 Aligned_cols=159 Identities=24% Similarity=0.288 Sum_probs=123.2
Q ss_pred CCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHh-CCCCCeEEEEEECCc-eEEeeccccccCHHHHHHHHHHHhcccc
Q 004349 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGINFI 400 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~-L~~~d~f~Ii~F~~~-~~~~~~~~~~~t~~~i~~a~~~I~~~~~ 400 (759)
...+..++||||+||||.+.+|..+|.++..+|.. +.+.|+++||.|+++ +++..+.+. ++..+.++|. .+.
T Consensus 398 ~~~~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lppT~-----~~~~~~~~L~-~l~ 471 (584)
T PRK13406 398 QRSETTTIFVVDASGSAALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPPTR-----SLVRAKRSLA-GLP 471 (584)
T ss_pred ccCCccEEEEEECCCCCcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCCCc-----CHHHHHHHHh-cCC
Confidence 45678999999999999999999999999999865 678999999999765 666555432 4556667776 788
Q ss_pred CCCCCchHHHHHHHHHHHhcC--CCCCCEEEEEeCCCCCCh-----------HHHHHHHHHHHHcCCCCCceEEEEEecC
Q 004349 401 AGGSTNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDE-----------RQICDAMKSRLTNGGSICPRIYTFGIGS 467 (759)
Q Consensus 401 ~~GgT~i~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~~~~-----------~~i~~~v~~~~~~~~~~~~rI~t~GiG~ 467 (759)
.+|||.|+.+|..|++.+... ++..+.|||+|||..+.. .+.... ...+. ..++++++|++|.
T Consensus 472 ~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~-a~~~~---~~gi~~~vId~g~ 547 (584)
T PRK13406 472 GGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAA-ARALR---AAGLPALVIDTSP 547 (584)
T ss_pred CCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHH-HHHHH---hcCCeEEEEecCC
Confidence 999999999999999987643 344689999999997532 111222 22222 3358899999997
Q ss_pred CcCHHHHHHHHhhcCCEEEEEcCCc
Q 004349 468 YCNHYFLRMLAMISRGYYGAAYDLD 492 (759)
Q Consensus 468 ~~n~~lL~~LA~~~gG~~~~v~d~~ 492 (759)
.. ..+++.||+.++|.|+.+.+.+
T Consensus 548 ~~-~~~~~~LA~~~gg~y~~l~~~~ 571 (584)
T PRK13406 548 RP-QPQARALAEAMGARYLPLPRAD 571 (584)
T ss_pred CC-cHHHHHHHHhcCCeEEECCCCC
Confidence 64 4578999999999999988764
No 36
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.56 E-value=2.1e-13 Score=133.86 Aligned_cols=156 Identities=28% Similarity=0.403 Sum_probs=120.9
Q ss_pred CceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCC---CCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCC
Q 004349 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~ 402 (759)
|.+++|++|.|+||.+.+++.+++++..++..+.. +++++|+.|++....+.+.....+...+...++.+.. ...
T Consensus 1 ~~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~ 78 (177)
T smart00327 1 PLDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLNDSRSKDALLEALASLSY--KLG 78 (177)
T ss_pred CccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEcccccCCHHHHHHHHHhcCC--CCC
Confidence 46899999999999988999999999999999876 7899999999988776654323355555555553321 158
Q ss_pred CCCchHHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHH
Q 004349 403 GSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (759)
Q Consensus 403 GgT~i~~aL~~A~~~l~~~-----~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~L 477 (759)
|+|++..+|+.+++.+... .+..+.||++|||..++.....+.++.... .++.++.||+|...+...|+.|
T Consensus 79 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~----~~i~i~~i~~~~~~~~~~l~~~ 154 (177)
T smart00327 79 GGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKR----SGVKVFVVGVGNDVDEEELKKL 154 (177)
T ss_pred CCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHH----CCCEEEEEEccCccCHHHHHHH
Confidence 9999999999999987521 112568999999998764344444444322 2489999999987799999999
Q ss_pred HhhcCCEEEE
Q 004349 478 AMISRGYYGA 487 (759)
Q Consensus 478 A~~~gG~~~~ 487 (759)
+..++|.|.+
T Consensus 155 ~~~~~~~~~~ 164 (177)
T smart00327 155 ASAPGGVYVF 164 (177)
T ss_pred hCCCcceEEe
Confidence 9999999876
No 37
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.56 E-value=1e-13 Score=136.85 Aligned_cols=168 Identities=19% Similarity=0.174 Sum_probs=113.2
Q ss_pred ceEEEEEcCCCCCC------C---CChHHHHHHHHHHHH--hCCCCCeEEEEEECCceEEeecccc----ccCH---HHH
Q 004349 327 KDVIFIVDISGSMQ------G---KPLEDTKNALAVALS--KLDPGDSFNIVAFNGETYLFSTSME----LATK---EAV 388 (759)
Q Consensus 327 ~dvvfVlD~SGSM~------g---~~i~~aK~al~~~L~--~L~~~d~f~Ii~F~~~~~~~~~~~~----~~t~---~~i 388 (759)
+.+++++|.||||. | .+++.+|..+..+.+ .-..+|+++ |+.+.....+.+. ..+. +.+
T Consensus 1 ~~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG---~~g~~~~~~~lt~d~p~t~d~~~~~~l 77 (191)
T cd01455 1 KRLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIG---HSGDGPCVPFVKTNHPPKNNKERLETL 77 (191)
T ss_pred CceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHhCccceee---ecCcccccCccccccCcccchhHHHHH
Confidence 46899999999992 2 467788888777752 234688888 3444322222111 1123 344
Q ss_pred HHHHHHHhccccCCCCCchHHHHHHHHHHHh-cCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHcCCCCCceEEEEEec
Q 004349 389 ERAHQWIGINFIAGGSTNICAPLTKAVEMLT-NSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIG 466 (759)
Q Consensus 389 ~~a~~~I~~~~~~~GgT~i~~aL~~A~~~l~-~~~~~~~~IiLlTDG~~~~~~-~i~~~v~~~~~~~~~~~~rI~t~GiG 466 (759)
...++...- -.++.+|. +||..|++.+. .++...+.|||||||..+... ...+...+... ..+++||+||||
T Consensus 78 ~~~l~~~q~-g~ag~~Ta--dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~---~~gV~iytIgiG 151 (191)
T cd01455 78 KMMHAHSQF-CWSGDHTV--EATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAR---EPNVNAFVIFIG 151 (191)
T ss_pred HHHHHhccc-CccCccHH--HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHH---hCCCEEEEEEec
Confidence 444444331 12345666 99999999997 777778899999999975433 11221112111 246999999999
Q ss_pred CCcCHHHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHh
Q 004349 467 SYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTR 504 (759)
Q Consensus 467 ~~~n~~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~ 504 (759)
.. +...|+.+|+.+||.|+.+.+.+++++.+++++..
T Consensus 152 ~~-d~~~l~~iA~~tgG~~F~A~d~~~L~~iy~~I~~~ 188 (191)
T cd01455 152 SL-SDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTS 188 (191)
T ss_pred CC-CHHHHHHHHhCCCCcEEEeCCHHHHHHHHHHHHHH
Confidence 85 77889999999999999999998888877777654
No 38
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.53 E-value=3.1e-13 Score=129.45 Aligned_cols=149 Identities=31% Similarity=0.462 Sum_probs=118.9
Q ss_pred ceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCC---CCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCC
Q 004349 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~G 403 (759)
.+++|++|.|+||...+++.+++++..++..+.. .++++++.|++....+.+.....+.+.+.++++++.. ...|
T Consensus 1 ~~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 78 (161)
T cd00198 1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKK--GLGG 78 (161)
T ss_pred CcEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeecccccCCHHHHHHHHHhccc--CCCC
Confidence 3689999999999777999999999999999886 7899999999987777666554567777777776641 4789
Q ss_pred CCchHHHHHHHHHHHhcC--CCCCCEEEEEeCCCCCChH-HHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhh
Q 004349 404 STNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480 (759)
Q Consensus 404 gT~i~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~~~~~-~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~ 480 (759)
+|++..+|..+.+.+... ....+.+|++|||..+... ...+.+. .+.+ .+++++.||+|...+...|+.|+..
T Consensus 79 ~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~-~~~~---~~v~v~~v~~g~~~~~~~l~~l~~~ 154 (161)
T cd00198 79 GTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAAR-ELRK---LGITVYTIGIGDDANEDELKEIADK 154 (161)
T ss_pred CccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHH-HHHH---cCCEEEEEEcCCCCCHHHHHHHhcc
Confidence 999999999999998763 4567799999999986554 2223222 2222 2589999999997789999999998
Q ss_pred c
Q 004349 481 S 481 (759)
Q Consensus 481 ~ 481 (759)
+
T Consensus 155 ~ 155 (161)
T cd00198 155 T 155 (161)
T ss_pred c
Confidence 7
No 39
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=99.52 E-value=8.1e-14 Score=116.87 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=61.9
Q ss_pred CceecceeceEEEEEEEEeceEEEEEEEEEEEccCCCCceeEEEEEeecCCCceEEEEEEEECCEEEEEEEEeec
Q 004349 81 PSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALG 155 (759)
Q Consensus 81 ~~~vPL~~~~v~v~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLpe~a~V~~f~~~i~gk~i~g~V~eke 155 (759)
...+||++.+|+..|.|+ .|.+|++++|+| ++++++||.|+|||+|+++|+||++.|+||+++++|++|.
T Consensus 9 ~~~LpL~~~~v~a~v~G~--~~~~ta~lty~N---~~~~plEg~f~fPL~e~~~V~gfea~i~gr~v~~~v~~rt 78 (78)
T PF13757_consen 9 RNPLPLQSSRVTACVNGY--SAGTTASLTYEN---PEDRPLEGVFVFPLDEGATVVGFEADIGGRIVTVQVQDRT 78 (78)
T ss_pred CCcceEEEeEEEEEEEcc--cccEEEEEEEEC---CCCCcEEEEEEEecCCCcEEEEEEEEeCCcEEEEEeeecC
Confidence 345788887777777665 899999999999 5799999999999999999999999999999999999873
No 40
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=99.51 E-value=2.6e-13 Score=130.07 Aligned_cols=142 Identities=25% Similarity=0.392 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCC------CeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccC
Q 004349 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPG------DSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 328 dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~------d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~ 401 (759)
-++|++|+||||.|++|+.++..++.+++.|..+ .+++||+|++.++...+++. +.++--..+.+
T Consensus 5 P~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~---------~~nF~~p~L~a 75 (207)
T COG4245 5 PCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTD---------AANFNPPILTA 75 (207)
T ss_pred CEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhh---------HhhcCCCceec
Confidence 3899999999999999999999999999998743 37999999998888777642 33333335778
Q ss_pred CCCCchHHHHHHHHHHHhcC---------CCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCC-cCH
Q 004349 402 GGSTNICAPLTKAVEMLTNS---------RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY-CNH 471 (759)
Q Consensus 402 ~GgT~i~~aL~~A~~~l~~~---------~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~-~n~ 471 (759)
.|||.+++||+.+++++..+ ...++.+||+|||+++|.-..-...... ......++..+++|.. +|.
T Consensus 76 ~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~---~~~~~k~v~a~~~G~~~ad~ 152 (207)
T COG4245 76 QGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQ---GERRAKSVAAFSVGVQGADN 152 (207)
T ss_pred CCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhh---cccccceEEEEEeccccccc
Confidence 99999999999999998754 1347899999999997654433222222 1223356888888876 888
Q ss_pred HHHHHHHhhc
Q 004349 472 YFLRMLAMIS 481 (759)
Q Consensus 472 ~lL~~LA~~~ 481 (759)
..|+.|++.-
T Consensus 153 ~~L~qit~~V 162 (207)
T COG4245 153 KTLNQITEKV 162 (207)
T ss_pred HHHHHHHHhh
Confidence 8899887654
No 41
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.49 E-value=1.2e-12 Score=128.63 Aligned_cols=146 Identities=19% Similarity=0.235 Sum_probs=109.9
Q ss_pred ceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC---CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCC
Q 004349 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~G 403 (759)
+||+||||.|+||....++.+|+.+..+++.+. .+.|++++.|+++++....+....+.+.+.+++..+. ..+|
T Consensus 1 ~DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~~~~~~l~~~i~~i~---~~~g 77 (165)
T cd01481 1 KDIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLR---LRGG 77 (165)
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEeccccCCHHHHHHHHHhcc---cCCC
Confidence 489999999999998899999999999999886 3469999999999987666655556777777666443 2234
Q ss_pred -CCchHHHHHHHHHHHhcC-C------CCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHH
Q 004349 404 -STNICAPLTKAVEMLTNS-R------GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (759)
Q Consensus 404 -gT~i~~aL~~A~~~l~~~-~------~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~ 475 (759)
+|+++.||+.+.+.+-.. . +.++.+|++|||..++. +... .+.+++ .++.+|+||+|. .|...|+
T Consensus 78 ~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~--~~~~-a~~lr~---~gv~i~~vG~~~-~~~~eL~ 150 (165)
T cd01481 78 SQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDD--VERP-AVALKR---AGIVPFAIGARN-ADLAELQ 150 (165)
T ss_pred CcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcch--HHHH-HHHHHH---CCcEEEEEeCCc-CCHHHHH
Confidence 589999999998765332 1 23468899999997653 2222 233333 358899999984 6899999
Q ss_pred HHHhhcC
Q 004349 476 MLAMISR 482 (759)
Q Consensus 476 ~LA~~~g 482 (759)
.||....
T Consensus 151 ~ias~p~ 157 (165)
T cd01481 151 QIAFDPS 157 (165)
T ss_pred HHhCCCc
Confidence 9998774
No 42
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.49 E-value=4.5e-13 Score=135.85 Aligned_cols=166 Identities=22% Similarity=0.257 Sum_probs=122.1
Q ss_pred CCCCceEEEEEcCCCCCCCC-ChHHHHHHHHHHHHh-CCCCCeEEEEEECC-ceEEeeccccccCHHHHHHHHHHHhccc
Q 004349 323 KVFKKDVIFIVDISGSMQGK-PLEDTKNALAVALSK-LDPGDSFNIVAFNG-ETYLFSTSMELATKEAVERAHQWIGINF 399 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~-~i~~aK~al~~~L~~-L~~~d~f~Ii~F~~-~~~~~~~~~~~~t~~~i~~a~~~I~~~~ 399 (759)
.....-|+||+|.||||... +|+.+|-++..+|.. ....|++++|.|.. +++++.+.+. +++.+.++|. .+
T Consensus 75 ~r~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT~-----sv~~~~~~L~-~l 148 (261)
T COG1240 75 GRAGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPTS-----SVELAERALE-RL 148 (261)
T ss_pred cCcCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCCcc-----cHHHHHHHHH-hC
Confidence 34567799999999999987 899999998888764 56789999999994 4676665533 3456666676 78
Q ss_pred cCCCCCchHHHHHHHHHHHhcCC----CCCCEEEEEeCCCCCCh--HHHHHHHHHHHHcCCCCCceEEEEEec-CCcCHH
Q 004349 400 IAGGSTNICAPLTKAVEMLTNSR----GSIPIIFLVTDGAVEDE--RQICDAMKSRLTNGGSICPRIYTFGIG-SYCNHY 472 (759)
Q Consensus 400 ~~~GgT~i~~aL~~A~~~l~~~~----~~~~~IiLlTDG~~~~~--~~i~~~v~~~~~~~~~~~~rI~t~GiG-~~~n~~ 472 (759)
..+|+|.|.+||..|++++.... ...+.+|+||||..+.. ..+..............+..+..|... +.....
T Consensus 149 ~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~~~~g 228 (261)
T COG1240 149 PTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSEVRLG 228 (261)
T ss_pred CCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcccccc
Confidence 99999999999999999997643 45679999999997422 111122222222222334556677664 335667
Q ss_pred HHHHHHhhcCCEEEEEcCCchH
Q 004349 473 FLRMLAMISRGYYGAAYDLDSI 494 (759)
Q Consensus 473 lL~~LA~~~gG~~~~v~d~~~l 494 (759)
+.+.||+..||.|+.+.+..+.
T Consensus 229 ~~~~iA~~~Gg~~~~L~~l~~~ 250 (261)
T COG1240 229 LAEEIARASGGEYYHLDDLSDD 250 (261)
T ss_pred HHHHHHHHhCCeEEecccccch
Confidence 8999999999999999987644
No 43
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.49 E-value=4.9e-13 Score=155.90 Aligned_cols=159 Identities=21% Similarity=0.278 Sum_probs=118.5
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHh-CCCCCeEEEEEECCce-EEeeccccccCHHHHHHHHHHHhccccC
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGET-YLFSTSMELATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~-L~~~d~f~Ii~F~~~~-~~~~~~~~~~t~~~i~~a~~~I~~~~~~ 401 (759)
.....++||||.||||.+.+|+.+|.++..++.. +...|+|+||.|++.. ..+.+.+. +.. .+.+.|. .+..
T Consensus 405 ~~~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~t~--~~~---~~~~~L~-~l~~ 478 (589)
T TIGR02031 405 KSGRLLIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPSR--SVE---QAKRRLD-VLPG 478 (589)
T ss_pred ccCceEEEEEECCCCCChHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCCCC--CHH---HHHHHHh-cCCC
Confidence 3456799999999999999999999999999875 4578999999998764 55444322 333 3445565 6778
Q ss_pred CCCCchHHHHHHHHHHHhcCC--CCCCEEEEEeCCCCCCh----------------HHHHHHHHHHHHcCCCCCceEEEE
Q 004349 402 GGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDE----------------RQICDAMKSRLTNGGSICPRIYTF 463 (759)
Q Consensus 402 ~GgT~i~~aL~~A~~~l~~~~--~~~~~IiLlTDG~~~~~----------------~~i~~~v~~~~~~~~~~~~rI~t~ 463 (759)
+|+|+++.+|..|++.+.+.. ...+.|||+|||..+.. ..+.. +.+.+. ..++.+++|
T Consensus 479 gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~-~a~~~~---~~gi~~~vi 554 (589)
T TIGR02031 479 GGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALA-LARKIR---EAGMPALVI 554 (589)
T ss_pred CCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHH-HHHHHH---hcCCeEEEE
Confidence 999999999999999986432 34568999999997521 11122 222232 235789999
Q ss_pred EecCC-cCHHHHHHHHhhcCCEEEEEcCCc
Q 004349 464 GIGSY-CNHYFLRMLAMISRGYYGAAYDLD 492 (759)
Q Consensus 464 GiG~~-~n~~lL~~LA~~~gG~~~~v~d~~ 492 (759)
++|.. .+..+++.||+.++|.|+++.+.+
T Consensus 555 d~~~~~~~~~~~~~lA~~~~g~y~~l~~~~ 584 (589)
T TIGR02031 555 DTAMRFVSTGFAQKLARKMGAHYIYLPNAT 584 (589)
T ss_pred eCCCCCccchHHHHHHHhcCCcEEeCCCCC
Confidence 99876 345789999999999999988764
No 44
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.44 E-value=1.1e-12 Score=158.01 Aligned_cols=185 Identities=25% Similarity=0.330 Sum_probs=156.0
Q ss_pred CCCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEee----ccccccCHHHHHHHHHHHhc
Q 004349 322 RKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFS----TSMELATKEAVERAHQWIGI 397 (759)
Q Consensus 322 ~~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~----~~~~~~t~~~i~~a~~~I~~ 397 (759)
....|++|+|++|.||||.|.+++.+|..+..+|+.|.++|.|+|++|++++.... ....++|..|++...+.++
T Consensus 221 aAt~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i~- 299 (1104)
T KOG2353|consen 221 AATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAIE- 299 (1104)
T ss_pred ccCCccceEEEEeccccccchhhHHHHHHHHHHHHhcccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHHh-
Confidence 34679999999999999999999999999999999999999999999999986544 3456789999999999998
Q ss_pred cccCCCCCchHHHHHHHHHHHhcCCC---------CCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCC
Q 004349 398 NFIAGGSTNICAPLTKAVEMLTNSRG---------SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY 468 (759)
Q Consensus 398 ~~~~~GgT~i~~aL~~A~~~l~~~~~---------~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~ 468 (759)
.+.+.|-+++..|++.|+++|..... -...|+++|||.+++..++++.. +.+...+|+|+|-||..
T Consensus 300 ~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~~~~If~~y-----n~~~~~Vrvftflig~~ 374 (1104)
T KOG2353|consen 300 TLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDENAKEIFEKY-----NWPDKKVRVFTFLIGDE 374 (1104)
T ss_pred hhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcccHHHHHHhh-----ccCCCceEEEEEEeccc
Confidence 67899999999999999999975321 12479999999998888887654 23356799999999965
Q ss_pred -cCHHHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHhhhcceEee
Q 004349 469 -CNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLAN 512 (759)
Q Consensus 469 -~n~~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~~~p~l~d 512 (759)
.+...++.+|..+.|.|..|.+..++.......+.-+..|....
T Consensus 375 ~~~~~~~~wmac~n~gyy~~I~~~~~v~~~~~~y~~vlsRp~vl~ 419 (1104)
T KOG2353|consen 375 VYDLDEIQWMACANKGYYVHIISIADVRENVLEYLDVLSRPLVLQ 419 (1104)
T ss_pred ccccccchhhhhhCCCceEeccchhhcChHhhhhhhhhccceeec
Confidence 34566999999999999999999999888888777777776443
No 45
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.43 E-value=2.3e-12 Score=130.59 Aligned_cols=147 Identities=20% Similarity=0.275 Sum_probs=106.2
Q ss_pred CceEEEEEcCCCCCCCC-------ChHHHHHHHHHHHHhCC--CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHh
Q 004349 326 KKDVIFIVDISGSMQGK-------PLEDTKNALAVALSKLD--PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIG 396 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g~-------~i~~aK~al~~~L~~L~--~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~ 396 (759)
+++++|+||.||||... +++.+|+++..++..+. +.|.+.++.|++....+.+. +...+.+++ .
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~~~~----~~~~v~~~~---~ 74 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRYDNV----NSSKVDQLF---A 74 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccccCCc----CHHHHHHHH---h
Confidence 57999999999999863 68999999999887654 46789999998887554332 344444444 3
Q ss_pred ccccCCCCCchHHHHHHHHHHHhcCC----C--CCCEEEEEeCCCCCChHHHHHHHHHHHHcC-CCCCceEEEEEecCC-
Q 004349 397 INFIAGGSTNICAPLTKAVEMLTNSR----G--SIPIIFLVTDGAVEDERQICDAMKSRLTNG-GSICPRIYTFGIGSY- 468 (759)
Q Consensus 397 ~~~~~~GgT~i~~aL~~A~~~l~~~~----~--~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~-~~~~~rI~t~GiG~~- 468 (759)
.+.+.|+|++..+|+.+++.+.... . ....||++|||.+++...+.+.+.+..... ....+.+++|+||++
T Consensus 75 -~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~ 153 (199)
T cd01457 75 -ENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIGRDP 153 (199)
T ss_pred -cCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEEeCCcH
Confidence 4567899999999999986443211 1 146899999999987766555555543321 113578999999986
Q ss_pred cCHHHHHHHHhh
Q 004349 469 CNHYFLRMLAMI 480 (759)
Q Consensus 469 ~n~~lL~~LA~~ 480 (759)
.+..+|+.|+..
T Consensus 154 ~~~~~L~~ld~~ 165 (199)
T cd01457 154 AATAFLKALDDQ 165 (199)
T ss_pred HHHHHHHHHhHH
Confidence 467889998864
No 46
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.38 E-value=8.3e-12 Score=147.23 Aligned_cols=157 Identities=24% Similarity=0.304 Sum_probs=113.9
Q ss_pred CCCCceEEEEEcCCCCCCCC-ChHHHHHHHHHHHH-hCCCCCeEEEEEECCc-eEEeeccccccCHHHHHHHHHHHhccc
Q 004349 323 KVFKKDVIFIVDISGSMQGK-PLEDTKNALAVALS-KLDPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGINF 399 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~-~i~~aK~al~~~L~-~L~~~d~f~Ii~F~~~-~~~~~~~~~~~t~~~i~~a~~~I~~~~ 399 (759)
......++||||.||||.+. +|..+|.++..++. .+..+|+|+||.|+++ +....+.+. +...+. ..|. .+
T Consensus 462 ~r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~t~--~~~~~~---~~L~-~l 535 (633)
T TIGR02442 462 GRAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTS--SVELAA---RRLE-EL 535 (633)
T ss_pred CCCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCCCC--CHHHHH---HHHH-hC
Confidence 44567899999999999874 89999999888875 4567899999999864 565555432 333333 4554 56
Q ss_pred cCCCCCchHHHHHHHHHHHhc----CCCCCCEEEEEeCCCCCCh---H---HHHHHHHHHHHcCCCCCceEEEEEecCC-
Q 004349 400 IAGGSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDGAVEDE---R---QICDAMKSRLTNGGSICPRIYTFGIGSY- 468 (759)
Q Consensus 400 ~~~GgT~i~~aL~~A~~~l~~----~~~~~~~IiLlTDG~~~~~---~---~i~~~v~~~~~~~~~~~~rI~t~GiG~~- 468 (759)
..+|+|+|..+|..|++.+.. .+...+.|||+|||..+.. . +....+.+.+.+ .++.+++|+.+..
T Consensus 536 ~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~---~~i~~~vIdt~~~~ 612 (633)
T TIGR02442 536 PTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAA---RGILFVVIDTESGF 612 (633)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHh---cCCeEEEEeCCCCC
Confidence 789999999999999998873 3345679999999997542 1 111222333332 2467777777653
Q ss_pred cCHHHHHHHHhhcCCEEEEE
Q 004349 469 CNHYFLRMLAMISRGYYGAA 488 (759)
Q Consensus 469 ~n~~lL~~LA~~~gG~~~~v 488 (759)
....+++.||+.+||.|+.+
T Consensus 613 ~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 613 VRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred cchhHHHHHHHhhCCeEEec
Confidence 45789999999999999875
No 47
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.34 E-value=6e-11 Score=117.69 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=116.9
Q ss_pred ceEEEEEcCCCCCCCC----ChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccc---
Q 004349 327 KDVIFIVDISGSMQGK----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF--- 399 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~----~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~--- 399 (759)
..|++|||.||||++. ..+.+.+-+..+-.+|.++..+.++.|+++.....+. +..+....++.+....
T Consensus 2 ArV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v----t~~~~~~~v~~~~~~~~~~ 77 (200)
T PF10138_consen 2 ARVYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV----TLDNYEGYVDELHAGLPDW 77 (200)
T ss_pred cEEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc----CHHHHHHHHHHHhcccccc
Confidence 4689999999999863 4555666566666678887789999999998776543 6667776666654332
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCC--CCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHH
Q 004349 400 IAGGSTNICAPLTKAVEMLTNSRG--SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (759)
Q Consensus 400 ~~~GgT~i~~aL~~A~~~l~~~~~--~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~L 477 (759)
...|+|+...+|+.+++....+.. .+..|+|+|||.+.+...+.+.+++. ....+.+--||||.. +..+|+.|
T Consensus 78 ~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~~~~~~~~i~~a----s~~pifwqFVgiG~~-~f~fL~kL 152 (200)
T PF10138_consen 78 GRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDDRRAIEKLIREA----SDEPIFWQFVGIGDS-NFGFLEKL 152 (200)
T ss_pred CCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccchHHHHHHHHhc----cCCCeeEEEEEecCC-cchHHHHh
Confidence 456899999999999998874322 25589999999999888877777655 344577778999987 58999999
Q ss_pred HhhcCC-----EEEEEcCCchH
Q 004349 478 AMISRG-----YYGAAYDLDSI 494 (759)
Q Consensus 478 A~~~gG-----~~~~v~d~~~l 494 (759)
....|- .++.+.+.+++
T Consensus 153 D~l~gR~vDNa~Ff~~~d~~~l 174 (200)
T PF10138_consen 153 DDLAGRVVDNAGFFAIDDIDEL 174 (200)
T ss_pred hccCCcccCCcCeEecCCcccC
Confidence 985222 24555555444
No 48
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=99.22 E-value=6.2e-10 Score=110.73 Aligned_cols=144 Identities=14% Similarity=0.177 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCCCC-----CChHHHHHHHHHHHH---hCCCCCeEEEEEECC-ceEEeeccccccCHHHHHHHHHHHhcc
Q 004349 328 DVIFIVDISGSMQG-----KPLEDTKNALAVALS---KLDPGDSFNIVAFNG-ETYLFSTSMELATKEAVERAHQWIGIN 398 (759)
Q Consensus 328 dvvfVlD~SGSM~g-----~~i~~aK~al~~~L~---~L~~~d~f~Ii~F~~-~~~~~~~~~~~~t~~~i~~a~~~I~~~ 398 (759)
.++|+||.|.||.. .+++.+|+++..++. ...++++++|+.|.+ .++...+.+. +...+..+++ .
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~--D~~~~~~~L~----~ 78 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTN--DQGKILSKLH----D 78 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCC--CHHHHHHHHH----h
Confidence 47899999999975 489999999987752 234688999999999 7888877654 5555555555 4
Q ss_pred ccCCCCCchHHHHHHHHHHHhcCCC--C-CCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCC-cCHHHH
Q 004349 399 FIAGGSTNICAPLTKAVEMLTNSRG--S-IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY-CNHYFL 474 (759)
Q Consensus 399 ~~~~GgT~i~~aL~~A~~~l~~~~~--~-~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~-~n~~lL 474 (759)
+...|+|++..||+.|...|+..+. . .+.|+|++++...++..+.+.+++..+ .+++++.||+|.. .|...|
T Consensus 79 i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk----~~I~v~vI~~G~~~~~~~~l 154 (187)
T cd01452 79 VQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKK----NNVSVDIINFGEIDDNTEKL 154 (187)
T ss_pred CCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHH----cCCeEEEEEeCCCCCCHHHH
Confidence 5567999999999999999976544 3 366777777765666666655554433 3589999999964 466777
Q ss_pred HHHHhhc
Q 004349 475 RMLAMIS 481 (759)
Q Consensus 475 ~~LA~~~ 481 (759)
+.+-+.-
T Consensus 155 ~~~~~~~ 161 (187)
T cd01452 155 TAFIDAV 161 (187)
T ss_pred HHHHHHh
Confidence 7776654
No 49
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=99.14 E-value=2e-09 Score=112.68 Aligned_cols=135 Identities=14% Similarity=0.172 Sum_probs=96.6
Q ss_pred CCceEEEEEcCCCCCCCC-----ChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccc
Q 004349 325 FKKDVIFIVDISGSMQGK-----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~-----~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~ 399 (759)
..-+|+|+||.|.||... .++ +|..+..+++.|. .++|+|+.|+.++....|.+...+. +.+++.++...
T Consensus 59 r~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le-~g~vgVv~Fg~~~~~v~Plt~d~~~---~a~~~~l~~~~ 133 (266)
T cd01460 59 RDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLE-VGQLGVCSFGEDVQILHPFDEQFSS---QSGPRILNQFT 133 (266)
T ss_pred cCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCc-CCcEEEEEeCCCceEeCCCCCCchh---hHHHHHhCccc
Confidence 467899999999999753 344 7778888888874 6899999999999888888764443 45555555333
Q ss_pred cCCCCCchHHHHHHHHHHHhcCC----CC--CCEEEEEeCCCCCChHHHH-HHHHHHHHcCCCCCceEEEEEecCC
Q 004349 400 IAGGSTNICAPLTKAVEMLTNSR----GS--IPIIFLVTDGAVEDERQIC-DAMKSRLTNGGSICPRIYTFGIGSY 468 (759)
Q Consensus 400 ~~~GgT~i~~aL~~A~~~l~~~~----~~--~~~IiLlTDG~~~~~~~i~-~~v~~~~~~~~~~~~rI~t~GiG~~ 468 (759)
-..++||+..+|..+.+.+.... +. .+.+|++|||...+..... ..+++.. + .++.++.|++-+.
T Consensus 134 f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~-e---~~i~l~~I~ld~~ 205 (266)
T cd01460 134 FQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAR-E---QNVFVVFIIIDNP 205 (266)
T ss_pred CCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHH-H---cCCeEEEEEEcCC
Confidence 45699999999999999997541 11 2799999999942222222 2233332 2 3588999999764
No 50
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.13 E-value=2.8e-10 Score=125.29 Aligned_cols=146 Identities=23% Similarity=0.261 Sum_probs=106.2
Q ss_pred ceEEEEEcCCCCCCCCChHHHHHHHHHHHH-hCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCCCC
Q 004349 327 KDVIFIVDISGSMQGKPLEDTKNALAVALS-KLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST 405 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~i~~aK~al~~~L~-~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT 405 (759)
..|+++||.||||.|.+.+.||..+..+++ .|..+-++-++.|++........ .-..++.++++++. ...+|||
T Consensus 273 GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~---~k~~~~~e~i~fL~--~~f~GGT 347 (437)
T COG2425 273 GPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYELY---EKKIDIEELIEFLS--YVFGGGT 347 (437)
T ss_pred CCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeeec---CCccCHHHHHHHHh--hhcCCCC
Confidence 679999999999999999999976666554 47778899999999954332211 12336788999986 4566779
Q ss_pred chHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhc
Q 004349 406 NICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMIS 481 (759)
Q Consensus 406 ~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~ 481 (759)
|+..||..|++.++.......-||++|||...-.+.....+.+..+. ...++|+|-||..- ..-|..++...
T Consensus 348 D~~~~l~~al~~~k~~~~~~adiv~ITDg~~~~~~~~~~~v~e~~k~---~~~rl~aV~I~~~~-~~~l~~Isd~~ 419 (437)
T COG2425 348 DITKALRSALEDLKSRELFKADIVVITDGEDERLDDFLRKVKELKKR---RNARLHAVLIGGYG-KPGLMRISDHI 419 (437)
T ss_pred ChHHHHHHHHHHhhcccccCCCEEEEeccHhhhhhHHHHHHHHHHHH---hhceEEEEEecCCC-Ccccceeeeee
Confidence 99999999999998765555689999999965444444545444332 35799999999873 33344454443
No 51
>PRK10997 yieM hypothetical protein; Provisional
Probab=99.11 E-value=1.5e-09 Score=121.94 Aligned_cols=144 Identities=16% Similarity=0.158 Sum_probs=105.6
Q ss_pred CCCCceEEEEEcCCCCCCCCChHHHHHHHHHHH-HhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccC
Q 004349 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVAL-SKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L-~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~ 401 (759)
......++++||+||||.|.+.+.||..+..+. -.+..++++.++.|++....+ +. .....+..+++++.. ..
T Consensus 320 ~~~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~-~l---~~~~gl~~ll~fL~~--~f 393 (487)
T PRK10997 320 EQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTY-EL---TGPDGLEQAIRFLSQ--SF 393 (487)
T ss_pred CCCCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceee-cc---CCccCHHHHHHHHHH--hc
Confidence 346788999999999999888888887444443 357789999999999987643 11 134466778888862 35
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCC-hHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHH
Q 004349 402 GGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVED-ERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (759)
Q Consensus 402 ~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~-~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~ 475 (759)
+|||++..+|+.+++.+....-....||++||+.... ..+..+.++..... .+.|+|++.||...+..+++
T Consensus 394 ~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~---~~~rf~~l~i~~~~~p~l~~ 465 (487)
T PRK10997 394 RGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQ---HQHRFHAVAMSAHGKPGIMR 465 (487)
T ss_pred CCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHh---cCcEEEEEEeCCCCCchHHH
Confidence 8999999999999999876444456899999997643 44555555443321 34799999999877766654
No 52
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=98.96 E-value=1.6e-08 Score=103.94 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCCC-------CCChHHHHHHHHHHHHh---CCCCCeEEEEEECCceE----------EeeccccccCHHH
Q 004349 328 DVIFIVDISGSMQ-------GKPLEDTKNALAVALSK---LDPGDSFNIVAFNGETY----------LFSTSMELATKEA 387 (759)
Q Consensus 328 dvvfVlD~SGSM~-------g~~i~~aK~al~~~L~~---L~~~d~f~Ii~F~~~~~----------~~~~~~~~~t~~~ 387 (759)
.++|+||+|.||. ..+++.+++++..++++ -.++|+++||.|+++.. .+.+. ...+.+.
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l-~~~~~~~ 81 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDL-DTPGAER 81 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecC-CCCCHHH
Confidence 5899999999994 25799999999999997 37899999999999742 12222 2346666
Q ss_pred HHHHHHHHhcccc-------CCCCCchHHHHHHHHHHHhc--CCCCCCEEEEEeCCCCCCh--HHHHHHHHHHHHcCCCC
Q 004349 388 VERAHQWIGINFI-------AGGSTNICAPLTKAVEMLTN--SRGSIPIIFLVTDGAVEDE--RQICDAMKSRLTNGGSI 456 (759)
Q Consensus 388 i~~a~~~I~~~~~-------~~GgT~i~~aL~~A~~~l~~--~~~~~~~IiLlTDG~~~~~--~~i~~~v~~~~~~~~~~ 456 (759)
++...+.+..... ..++|++..||..|.+++.. .....+.|||+|||....+ ......+...+......
T Consensus 82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~ 161 (218)
T cd01458 82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDK 161 (218)
T ss_pred HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 6666665542211 35789999999999999975 2334679999999985421 11111122222222234
Q ss_pred CceEEEEEecCCc
Q 004349 457 CPRIYTFGIGSYC 469 (759)
Q Consensus 457 ~~rI~t~GiG~~~ 469 (759)
++.+++||+|...
T Consensus 162 gI~i~~i~i~~~~ 174 (218)
T cd01458 162 GIELELFPLSSPG 174 (218)
T ss_pred CcEEEEEecCCCC
Confidence 6899999999764
No 53
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=98.92 E-value=2.3e-08 Score=100.08 Aligned_cols=172 Identities=17% Similarity=0.235 Sum_probs=105.6
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC-CCCeEEEEEECCceE-------EeeccccccCHHHHHHHHHHHh
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETY-------LFSTSMELATKEAVERAHQWIG 396 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~-------~~~~~~~~~t~~~i~~a~~~I~ 396 (759)
...-|.||||+||||.|.+++.+..++..+.+.|. -+-.+.|+.|.+..+ .|.....+..+..+......+.
T Consensus 11 ~d~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~vy 90 (219)
T PF11775_consen 11 RDTVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHIVY 90 (219)
T ss_pred CCeEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHHHH
Confidence 44568899999999999999888766555555553 267899999988742 1222222223333333222221
Q ss_pred c---------------cccCC-CCCch-HHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCh-------HHH-HHHHHHHHH
Q 004349 397 I---------------NFIAG-GSTNI-CAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDE-------RQI-CDAMKSRLT 451 (759)
Q Consensus 397 ~---------------~~~~~-GgT~i-~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~-------~~i-~~~v~~~~~ 451 (759)
. .+..+ ..-|+ +.||.+|.+.|.+.+...+.++++|||.|.+. ... ..-+++.+.
T Consensus 91 k~a~~~wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~ 170 (219)
T PF11775_consen 91 KDADTPWRRARRNLGLMMREGLLKENIDGEALRWAAERLLARPEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIA 170 (219)
T ss_pred HhcCChhhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHH
Confidence 1 11111 23444 67999999999888888899999999998632 111 112222222
Q ss_pred cC-CCCCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHhh
Q 004349 452 NG-GSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRG 505 (759)
Q Consensus 452 ~~-~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~ 505 (759)
.- ...++.+.+||||.++.+++ -.+..+.+.+++...+...+.++
T Consensus 171 ~ie~~~~Vel~aiGIg~D~~~yY---------~~~~~i~~~e~l~~~~~~~l~~l 216 (219)
T PF11775_consen 171 EIETRSDVELIAIGIGHDVSRYY---------RRAVTIDDVEELGGALFEQLARL 216 (219)
T ss_pred HHhccCCcEEEEEEcCCCchhhc---------ccceecCCHHHHHHHHHHHHHHH
Confidence 11 12357899999998865422 23455777788877776666554
No 54
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=98.64 E-value=4e-07 Score=93.88 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=78.3
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHh-ccccCC
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIG-INFIAG 402 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~-~~~~~~ 402 (759)
..+..+++++|+||||.+- ...+-..+..+.... .++.++.|+++.....+.....+. .+++..+. .....+
T Consensus 55 ~~~~~lvvl~DvSGSM~~~-s~~~l~~~~~l~~~~---~~~~~f~F~~~l~~vT~~l~~~~~---~~~l~~~~~~~~~~~ 127 (222)
T PF05762_consen 55 RKPRRLVVLCDVSGSMAGY-SEFMLAFLYALQRQF---RRVRVFVFSTRLTEVTPLLRRRDP---EEALARLSALVQSFG 127 (222)
T ss_pred CCCccEEEEEeCCCChHHH-HHHHHHHHHHHHHhC---CCEEEEEEeeehhhhhhhhccCCH---HHHHHHHHhhccCCC
Confidence 3456899999999999862 111222233333333 389999999987654433322222 23333332 123478
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCC-CChHHHHHHHHHHHHcCCCCCceEEEEE
Q 004349 403 GSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFG 464 (759)
Q Consensus 403 GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~-~~~~~i~~~v~~~~~~~~~~~~rI~t~G 464 (759)
|||+|..+|..+.+......-....+|++|||.. .+.....+.+++.... ..+++-+.
T Consensus 128 GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r----~~rviwLn 186 (222)
T PF05762_consen 128 GGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTNDPEPLAEELRRLRRR----GRRVIWLN 186 (222)
T ss_pred CccHHHHHHHHHHHHhhcccccCcEEEEEecccccCChHHHHHHHHHHHHh----CCEEEEEC
Confidence 9999999999999988632224568999999954 4444455555444332 24566553
No 55
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.59 E-value=2.5e-07 Score=104.58 Aligned_cols=173 Identities=18% Similarity=0.272 Sum_probs=101.7
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC-CCCeEEEEEECCceE-------EeeccccccCHHHHHH-----
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETY-------LFSTSMELATKEAVER----- 390 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~-------~~~~~~~~~t~~~i~~----- 390 (759)
....-|.|+||+||||.+..+..|+..+..+.+.|. .+-.+-|+.|.+.++ .|.....+..+..++.
T Consensus 390 ~~D~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~aw~gg~~re~w~~~g~p~~PgRlN~l~hii 469 (600)
T TIGR01651 390 FRDTVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREKWLKAGKPAAPGRLNDLRHII 469 (600)
T ss_pred CCCcEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeecccccccccchHHHHhcCCCCCCcccchhhhhh
Confidence 345568899999999999888777654444444443 367899999998642 1221111111211111
Q ss_pred ----------HHHHHhccccCC-CCCch-HHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChH--------HHHHHHHHHH
Q 004349 391 ----------AHQWIGINFIAG-GSTNI-CAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER--------QICDAMKSRL 450 (759)
Q Consensus 391 ----------a~~~I~~~~~~~-GgT~i-~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~--------~i~~~v~~~~ 450 (759)
+...+...+..+ ..-|+ +.||.+|.+.|..++...+++++||||.|.+.. ....-++..+
T Consensus 470 yk~ad~~wr~~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi 549 (600)
T TIGR01651 470 YKSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIARPEQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVI 549 (600)
T ss_pred hhccccchhhhccchhhhhhccccccCCchHHHHHHHHHHhcCcccceEEEEEeCCCcCCccccccCchhHHHHHHHHHH
Confidence 111110000000 11222 689999999998888888999999999985321 1111122222
Q ss_pred HcCCC-CCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHhh
Q 004349 451 TNGGS-ICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRG 505 (759)
Q Consensus 451 ~~~~~-~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~ 505 (759)
..... .++.+.+||||.++.+++ ..++.|.+.+++..+|.+.+..+
T Consensus 550 ~~~e~~~~vel~aigIg~Dv~r~Y---------~~~v~i~~~~eL~~~~~~qLa~L 596 (600)
T TIGR01651 550 EEIETRSPVELLAIGIGHDVTRYY---------RRAVTIVDAEELAGAMTEQLAAL 596 (600)
T ss_pred HHHhccCCceEEEeeccccHHHHc---------cccceecCHHHHHHHHHHHHHHH
Confidence 21112 358899999999865544 34457788888877776655543
No 56
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=98.45 E-value=6.3e-07 Score=83.93 Aligned_cols=96 Identities=20% Similarity=0.271 Sum_probs=67.0
Q ss_pred EEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCCCCchH
Q 004349 329 VIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNIC 408 (759)
Q Consensus 329 vvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT~i~ 408 (759)
+++++|+||||..+.+.+.-..+..+++.. +.++.|+.|+...+....... .+..+..+ .+.-+|||++.
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~~~------~~~~~~~~--~~~GgGGTdf~ 70 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVFRS------LEDELRDI--KLKGGGGTDFR 70 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEEec------cccccccc--ccCCCCCCcch
Confidence 578999999998866666555666667666 557999999999865432211 11222222 35678999999
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCCC
Q 004349 409 APLTKAVEMLTNSRGSIPIIFLVTDGAVED 438 (759)
Q Consensus 409 ~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~ 438 (759)
.+++.+.+. ......+|++|||..+.
T Consensus 71 pvf~~~~~~----~~~~~~vi~fTDg~~~~ 96 (126)
T PF09967_consen 71 PVFEYLEEN----RPRPSVVIYFTDGEGWP 96 (126)
T ss_pred HHHHHHHhc----CCCCCEEEEEeCCCCCC
Confidence 999988764 23345788999999643
No 57
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=98.42 E-value=6.4e-06 Score=82.16 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=114.3
Q ss_pred EEcCCCCCCC-----CChHHHHHHHHHHHHhC---CCCCeEEEEEECCc-eEEeeccccccCHHHHHHHHHHHhccccCC
Q 004349 332 IVDISGSMQG-----KPLEDTKNALAVALSKL---DPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGINFIAG 402 (759)
Q Consensus 332 VlD~SGSM~g-----~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~-~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~ 402 (759)
|||.|.+|.. .++..+.+++..|+..+ .|-.+++|+...+. ++.+.+.. .+.....+++..+. .....
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~ls--gn~~~h~~~L~~~~-~~~~~ 77 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELS--GNPQEHIEALKKLR-KLEPS 77 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecC--CCHHHHHHHHHHhc-cCCCC
Confidence 6899999975 36777777777777653 35568999999887 46666543 36777777777665 46788
Q ss_pred CCCchHHHHHHHHHHHhcCCCC-CCEEEEEeCCCC-CChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhh
Q 004349 403 GSTNICAPLTKAVEMLTNSRGS-IPIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480 (759)
Q Consensus 403 GgT~i~~aL~~A~~~l~~~~~~-~~~IiLlTDG~~-~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~ 480 (759)
|...+..+|+.|...|...+.+ .|.|+++.-... .|..++.+.+....+ .++|+..||++.. -+.++.|++.
T Consensus 78 G~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~----~~IrvsvI~laaE--v~I~k~i~~~ 151 (193)
T PF04056_consen 78 GEPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDIHETIESLKK----ENIRVSVISLAAE--VYICKKICKE 151 (193)
T ss_pred CChhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhHHHHHHHHHH----cCCEEEEEEEhHH--HHHHHHHHHh
Confidence 9999999999999999865432 355666553333 244455554444432 3599999999984 5789999999
Q ss_pred cCCEEEEEcCCchHHHHHH
Q 004349 481 SRGYYGAAYDLDSIEIQMQ 499 (759)
Q Consensus 481 ~gG~~~~v~d~~~l~~~l~ 499 (759)
++|.|..+-|.+.+.+.+.
T Consensus 152 T~G~y~V~lde~H~~~lL~ 170 (193)
T PF04056_consen 152 TGGTYGVILDEDHFKELLM 170 (193)
T ss_pred hCCEEEEecCHHHHHHHHH
Confidence 9999998888776655433
No 58
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.27 E-value=2.2e-05 Score=84.19 Aligned_cols=160 Identities=24% Similarity=0.317 Sum_probs=109.2
Q ss_pred CCCceEEEEEcCCCCCC--C--CChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccc
Q 004349 324 VFKKDVIFIVDISGSMQ--G--KPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~--g--~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~ 399 (759)
.....+++++|+|-||- | .++.+.--|+..++..--++|.+.+|.|+..++... .+.+.. + .-
T Consensus 461 rt~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~l~~i~Fgr~A~~v~-------v~eLt~----l--~~ 527 (652)
T COG4867 461 RTQAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDALQIIAFGRYARTVT-------AAELTG----L--AG 527 (652)
T ss_pred hcccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcceEEEeccchhcccC-------HHHHhc----C--CC
Confidence 34567999999999995 3 355566567778888777899999999998875432 111111 0 11
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCC-----------------ChHHHHHHHHHHHHcCCCCCceEEE
Q 004349 400 IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE-----------------DERQICDAMKSRLTNGGSICPRIYT 462 (759)
Q Consensus 400 ~~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~-----------------~~~~i~~~v~~~~~~~~~~~~rI~t 462 (759)
...-|||+..+|..|-+.+...++..++|+++|||+++ +...+...+++. .+-...++.+.+
T Consensus 528 v~eqgTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~-d~~~r~G~q~t~ 606 (652)
T COG4867 528 VYEQGTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGF-DDMARLGAQVTI 606 (652)
T ss_pred ccccccchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHH-HHHHhccceeeE
Confidence 23468999999999999998877778899999999974 112222333222 121223466777
Q ss_pred EEecCCcC-HHHHHHHHhhcCCEEEEEcCCchHHHHH
Q 004349 463 FGIGSYCN-HYFLRMLAMISRGYYGAAYDLDSIEIQM 498 (759)
Q Consensus 463 ~GiG~~~n-~~lL~~LA~~~gG~~~~v~d~~~l~~~l 498 (759)
|-+|.+.. ..|+..+|+..+|..++ .+.+.+-..+
T Consensus 607 FrLg~DpgL~~Fv~qva~rv~G~vv~-pdldglGaaV 642 (652)
T COG4867 607 FRLGSDPGLARFIDQVARRVQGRVVV-PDLDGLGAAV 642 (652)
T ss_pred EeecCCHhHHHHHHHHHHHhCCeEEe-cCcchhhHHH
Confidence 77777543 37899999999999875 4455565444
No 59
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=98.21 E-value=2.9e-06 Score=93.60 Aligned_cols=177 Identities=15% Similarity=0.193 Sum_probs=115.7
Q ss_pred CCceEEEEEcCCCCCCCCChHHHH-------HHHHHHHHhCC-CCCeEEEEEECCceEEeec--cccccCHHHHHHHHHH
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTK-------NALAVALSKLD-PGDSFNIVAFNGETYLFST--SMELATKEAVERAHQW 394 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK-------~al~~~L~~L~-~~d~f~Ii~F~~~~~~~~~--~~~~~t~~~i~~a~~~ 394 (759)
....+.+++|+|.||.. +|+..| ++|..+-..+. -++.+.|..|.+..+.|.- .....+.......--.
T Consensus 445 ~Dla~TLLvD~S~St~a-~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~~R 523 (637)
T COG4548 445 HDLAFTLLVDVSASTDA-KMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVGPR 523 (637)
T ss_pred ccceeEEEeecccchHH-HhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccchh
Confidence 44568899999999985 455544 44444433332 3778889999887654331 1122232222222233
Q ss_pred HhccccCCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChH-----HHHHHHHHHHHcCCCCCceEEEEEecCCc
Q 004349 395 IGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-----QICDAMKSRLTNGGSICPRIYTFGIGSYC 469 (759)
Q Consensus 395 I~~~~~~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~-----~i~~~v~~~~~~~~~~~~rI~t~GiG~~~ 469 (759)
|. .+.++-.|.++.||+.|.+.+-.++.+.+.+|++|||.+++-. .-+...++.+..+...++.+|.|-+....
T Consensus 524 Im-ALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtld~ea 602 (637)
T COG4548 524 IM-ALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTLDREA 602 (637)
T ss_pred he-ecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEecchh
Confidence 43 5778889999999999999998888889999999999986422 11122223333333456889999888765
Q ss_pred CHHHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHhhh
Q 004349 470 NHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGF 506 (759)
Q Consensus 470 n~~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~~ 506 (759)
-.++- +.-+.+-|.+|.+...+...+-.+++++.
T Consensus 603 ~~y~p---~~fgqngYa~V~~v~~LP~~L~~lyrkL~ 636 (637)
T COG4548 603 ISYLP---ALFGQNGYAFVERVAQLPGALPPLYRKLL 636 (637)
T ss_pred hhhhH---HHhccCceEEccchhhcchhHHHHHHHhc
Confidence 44332 22345556889999999998888887753
No 60
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=98.14 E-value=1.9e-05 Score=87.66 Aligned_cols=173 Identities=20% Similarity=0.281 Sum_probs=113.5
Q ss_pred EEEEEcCCCCCCC------CChHHHHHHHHHHHHhCC-----CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhc
Q 004349 329 VIFIVDISGSMQG------KPLEDTKNALAVALSKLD-----PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGI 397 (759)
Q Consensus 329 vvfVlD~SGSM~g------~~i~~aK~al~~~L~~L~-----~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~ 397 (759)
+.|++|+|+||.. .-++.||.|+..|++.-. .+||+-+++|..-..... .+-+++-.-.++.|+
T Consensus 4 ~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk----~~~~~~~a~~~~eik- 78 (888)
T KOG3768|consen 4 FLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVK----VACEKLGAVVIEEIK- 78 (888)
T ss_pred EEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhh----hHHhhcccHHHHHHH-
Confidence 6899999999985 368999999999997521 378999999986644322 123334445666676
Q ss_pred cccCC-CCCchHHHHHHHHHHHhcCC----------CC------CCEEEEEeCCCC-CChHHHH--------------HH
Q 004349 398 NFIAG-GSTNICAPLTKAVEMLTNSR----------GS------IPIIFLVTDGAV-EDERQIC--------------DA 445 (759)
Q Consensus 398 ~~~~~-GgT~i~~aL~~A~~~l~~~~----------~~------~~~IiLlTDG~~-~~~~~i~--------------~~ 445 (759)
++.+. |.+....++..|+++|.-.. ++ +..||++|||.- +....+. +.
T Consensus 79 ~l~a~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG~r~s~~~GV~~e~~Lpl~~p~pGse~ 158 (888)
T KOG3768|consen 79 KLHAPYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDGGRYSGVAGVPIEFRLPLDPPFPGSEM 158 (888)
T ss_pred hhcCccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEecCCccccccCCceeEEeccCCCCCcccc
Confidence 56655 55566777888999885321 11 347999999941 1000000 00
Q ss_pred HHHHHHcCCCCCceEEEEEe---c-----------CCcCHHHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHhhhcceE
Q 004349 446 MKSRLTNGGSICPRIYTFGI---G-----------SYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVL 510 (759)
Q Consensus 446 v~~~~~~~~~~~~rI~t~Gi---G-----------~~~n~~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~~~p~l 510 (759)
.++.. .=.-|+|++-+ | -..|...++.|.+.+||+.+.|.....+.+.++.++.+...-++
T Consensus 159 TkepF----RWDQrlftlVlRiPgt~~~~~~qlt~Vp~Dds~IermCevTGGRSysV~Spr~lnqciesLvqkvQ~gVv 233 (888)
T KOG3768|consen 159 TKEPF----RWDQRLFTLVLRIPGTPYPTISQLTAVPIDDSVIERMCEVTGGRSYSVVSPRQLNQCIESLVQKVQYGVV 233 (888)
T ss_pred ccccc----hhhhhhheeeEecCCCCCccHhhhcCCCCCchhhHHhhhhcCCceeeeeCHHHHHHHHHHHHHhhccCeE
Confidence 01000 01235776643 2 22466789999999999999999999998888888887654443
No 61
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.14 E-value=3.8e-05 Score=85.98 Aligned_cols=170 Identities=27% Similarity=0.332 Sum_probs=126.7
Q ss_pred CCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCC
Q 004349 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~ 402 (759)
...+.+..+++|+|+||.+..+..++.+...++..+.+.+.+.++.|........+.....+...+..++.. ...+.
T Consensus 34 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~ 110 (399)
T COG2304 34 LLVPANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIPPTGATNKESITAAIDQ---SLQAG 110 (399)
T ss_pred cccCcceEEEeccCCCccchhHHHHHHHHHHHhcccCCCCceEEEEecCCcceecCcccccCHHHHHHHHhh---hhccc
Confidence 456889999999999999988999999999999999999999999999966555544334456666666653 36789
Q ss_pred CCCchHHHHHHHHHHHhcC--CCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhh
Q 004349 403 GSTNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480 (759)
Q Consensus 403 GgT~i~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~ 480 (759)
|.|.+..++..+.+.+... .+....+.+.|||...-.......+...........+.+.++|+|.+.|.+.+..++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~~n~~~~~~~~~~ 190 (399)
T COG2304 111 GATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDVNEDELTGIAAA 190 (399)
T ss_pred cccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEecccccchhhhhhhhhc
Confidence 9999999999998887652 34456899999988632110111111111122234688999999999999999999999
Q ss_pred cCCEEEEEcCCchHH
Q 004349 481 SRGYYGAAYDLDSIE 495 (759)
Q Consensus 481 ~gG~~~~v~d~~~l~ 495 (759)
..|...++.......
T Consensus 191 ~~g~l~~~~~~~~~~ 205 (399)
T COG2304 191 ANGNLAFIYLSSLSE 205 (399)
T ss_pred cCcccccccCccccc
Confidence 989888877664443
No 62
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=98.13 E-value=0.00016 Score=75.43 Aligned_cols=163 Identities=14% Similarity=0.169 Sum_probs=108.7
Q ss_pred CCceEEEEEcCCCC-CCCCChHHHHHHHHHHHHhCC--CCCeEEEEEECCceEEeecc--c------c---------c--
Q 004349 325 FKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLD--PGDSFNIVAFNGETYLFSTS--M------E---------L-- 382 (759)
Q Consensus 325 ~~~dvvfVlD~SGS-M~g~~i~~aK~al~~~L~~L~--~~d~f~Ii~F~~~~~~~~~~--~------~---------~-- 382 (759)
.|..++||||+|.. ....-++.+++++...|+.|+ ++.+|+||+|++..+.+.-. . . +
T Consensus 2 ~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~~ 81 (239)
T cd01468 2 QPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPLP 81 (239)
T ss_pred CCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCCc
Confidence 45679999999964 445578999999999999998 88899999999876543211 0 0 0
Q ss_pred --------cCHHHHHHHHHHHhcccc----CCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCh-----------
Q 004349 383 --------ATKEAVERAHQWIGINFI----AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDE----------- 439 (759)
Q Consensus 383 --------~t~~~i~~a~~~I~~~~~----~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~----------- 439 (759)
...+.+.++++.|..... ...+..++.||+.|..++.... ..-.|++++.|.++.+
T Consensus 82 ~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-~gGkI~~f~sg~pt~GpG~l~~~~~~~ 160 (239)
T cd01468 82 DRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF-AGGRIIVFQGGLPTVGPGKLKSREDKE 160 (239)
T ss_pred CceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC-CCceEEEEECCCCCCCCCccccCcccc
Confidence 012455666666653322 2356788999999999998642 1336788888876411
Q ss_pred --------------HHHHHHHHHHHHcCCCCCceEEEEEecC-CcCHHHHHHHHhhcCCEEEEEcCC
Q 004349 440 --------------RQICDAMKSRLTNGGSICPRIYTFGIGS-YCNHYFLRMLAMISRGYYGAAYDL 491 (759)
Q Consensus 440 --------------~~i~~~v~~~~~~~~~~~~rI~t~GiG~-~~n~~lL~~LA~~~gG~~~~v~d~ 491 (759)
.+..+.+...+.+ .++-+..|..+. .++-.-|..|++.+||..++..+.
T Consensus 161 ~~~~~~e~~~~~~a~~fY~~la~~~~~---~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f 224 (239)
T cd01468 161 PIRSHDEAQLLKPATKFYKSLAKECVK---SGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSF 224 (239)
T ss_pred cCCCccchhcccccHHHHHHHHHHHHH---cCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCC
Confidence 1122223332322 234455555543 467788999999999999887765
No 63
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=98.04 E-value=0.00012 Score=76.68 Aligned_cols=164 Identities=17% Similarity=0.220 Sum_probs=101.6
Q ss_pred CCceEEEEEcCCCC-CCCCChHHHHHHHHHHHHhCC--CCCeEEEEEECCceEEee--cc--------------------
Q 004349 325 FKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLD--PGDSFNIVAFNGETYLFS--TS-------------------- 379 (759)
Q Consensus 325 ~~~dvvfVlD~SGS-M~g~~i~~aK~al~~~L~~L~--~~d~f~Ii~F~~~~~~~~--~~-------------------- 379 (759)
.|-.++||||+|.. ....-++.+++++...|+.|+ ++.+|+|++|++..+.+. ..
T Consensus 2 ~pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~~ 81 (243)
T PF04811_consen 2 QPPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPLP 81 (243)
T ss_dssp S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSSTS
T ss_pred CCCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCCc
Confidence 45679999999843 444578999999999999999 888999999999876542 10
Q ss_pred ---cc--ccCHHHHHHHHHHHhcccc----CCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChH----------
Q 004349 380 ---ME--LATKEAVERAHQWIGINFI----AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER---------- 440 (759)
Q Consensus 380 ---~~--~~t~~~i~~a~~~I~~~~~----~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~---------- 440 (759)
.. ....+.+.++++.|..... ...+..++.||+.|..+++..... -.|++++-|.++.+.
T Consensus 82 ~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~g-GkI~~F~s~~pt~G~Gg~l~~~~~~ 160 (243)
T PF04811_consen 82 DGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTG-GKILVFTSGPPTYGPGGSLKKREDS 160 (243)
T ss_dssp SSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS--EEEEEEESS---SSSTTSS-SBTTS
T ss_pred ccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccC-CEEEEEeccCCCCCCCceecccccc
Confidence 00 1135678888888763222 225678899999999999832222 356666666642111
Q ss_pred -----------------HHHHHHHHHHHcCCCCCceEEEEEecC-CcCHHHHHHHHhhcCCEEEEEcCCc
Q 004349 441 -----------------QICDAMKSRLTNGGSICPRIYTFGIGS-YCNHYFLRMLAMISRGYYGAAYDLD 492 (759)
Q Consensus 441 -----------------~i~~~v~~~~~~~~~~~~rI~t~GiG~-~~n~~lL~~LA~~~gG~~~~v~d~~ 492 (759)
+..+.+...+.+. ++.|..|..+. .++-.-|..|++.+||..++..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~fY~~la~~~~~~---~isvDlf~~~~~~~~l~tl~~l~~~TGG~l~~y~~f~ 227 (243)
T PF04811_consen 161 SHYDTEKEKALLLPPANEFYKKLAEECSKQ---GISVDLFVFSSDYVDLATLGPLARYTGGSLYYYPNFN 227 (243)
T ss_dssp CCCCHCTTHHCHSHSSSHHHHHHHHHHHHC---TEEEEEEEECSS--SHHHHTHHHHCTT-EEEEETTTT
T ss_pred cccccccchhhhccccchHHHHHHHHHHhc---CCEEEEEeecCCCCCcHhHHHHHHhCceeEEEeCCCC
Confidence 1233444443332 34455555553 4677889999999999999988776
No 64
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=98.03 E-value=0.00014 Score=76.09 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=98.7
Q ss_pred ceEEEEEcCCCCCCC---------------CChHHHHHHHHHHHHhCCCCCeEEEEEECCceEE---eeccc--cc----
Q 004349 327 KDVIFIVDISGSMQG---------------KPLEDTKNALAVALSKLDPGDSFNIVAFNGETYL---FSTSM--EL---- 382 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g---------------~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~---~~~~~--~~---- 382 (759)
.++++-||.++|-.. ...++|.+++-.++..+.++.+|-++.|+..... ..... .+
T Consensus 32 ~nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~p~ 111 (254)
T cd01459 32 SNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESPE 111 (254)
T ss_pred eeEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEeecccCCCCCccccccCCCCCCCc
Confidence 366677777666421 3456777788888888888889999999986421 11110 00
Q ss_pred -cCHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHHhcCCCC--CCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCce
Q 004349 383 -ATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGS--IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPR 459 (759)
Q Consensus 383 -~t~~~i~~a~~~I~~~~~~~GgT~i~~aL~~A~~~l~~~~~~--~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~r 459 (759)
..-+.+-++-+.+-......|.|++...|++|.+........ .-+++++|||.+++..++.+.+.+.- ...+.
T Consensus 112 ~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i~D~~~t~~aIv~AS----~~PlS 187 (254)
T cd01459 112 CQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITDMNETIKAIVEAS----KYPLS 187 (254)
T ss_pred ccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCcccHHHHHHHHHHHh----cCCeE
Confidence 011222222222222566779999999999999877654322 34689999999999888887776552 34577
Q ss_pred EEEEEecCCcCHHHHHHHHh
Q 004349 460 IYTFGIGSYCNHYFLRMLAM 479 (759)
Q Consensus 460 I~t~GiG~~~n~~lL~~LA~ 479 (759)
|..||+|+. +...|+.|-.
T Consensus 188 IiiVGVGd~-~F~~M~~LD~ 206 (254)
T cd01459 188 IVIVGVGDG-PFDAMERLDD 206 (254)
T ss_pred EEEEEeCCC-ChHHHHHhcC
Confidence 888899976 8888888865
No 65
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=98.01 E-value=4.6e-05 Score=82.66 Aligned_cols=166 Identities=20% Similarity=0.286 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC-CCCeEEEEEECCceE-------EeeccccccCHHHHHHHHHHHhcc-
Q 004349 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETY-------LFSTSMELATKEAVERAHQWIGIN- 398 (759)
Q Consensus 328 dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~-------~~~~~~~~~t~~~i~~a~~~I~~~- 398 (759)
-|.+|||.||||.|.+|..|-.....+.+.|. .+.++-|..|-..++ .|.....+..+..+......+...
T Consensus 415 vVtlviDnSGSMrGRpItvAatcAdilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrlndlrhiiyksA 494 (620)
T COG4547 415 VVTLVIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRLNDLRHIIYKSA 494 (620)
T ss_pred hheeeeccCCCcCCcceehhHHHHHHHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhhhhHHHHHHhcc
Confidence 46799999999999999888777666666664 477888888877543 233333334443333333222100
Q ss_pred -------ccCCC--------CCch-HHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCh-----------HHHHHHHHHHHH
Q 004349 399 -------FIAGG--------STNI-CAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDE-----------RQICDAMKSRLT 451 (759)
Q Consensus 399 -------~~~~G--------gT~i-~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~-----------~~i~~~v~~~~~ 451 (759)
....| --|| +.+|-+|-..+-.++..+++++++|||.+-+. ..-+..+.+.+.
T Consensus 495 daPwrRARrnlGlmmreglLkeNiDGEal~wah~rl~gRpEqrkIlmmiSDGAPvddstlsvnpGnylerHLRaVieeIE 574 (620)
T COG4547 495 DAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQRKILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIE 574 (620)
T ss_pred CCHHHHHHhhcchhhhcchhhccCChHHHHHHHHHHhcChhhceEEEEecCCCcccccccccCCchHHHHHHHHHHHHHh
Confidence 00011 1244 57888998888777777789999999997432 122333334443
Q ss_pred cCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHh
Q 004349 452 NGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTR 504 (759)
Q Consensus 452 ~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~ 504 (759)
. ...+.+.+||||.++-+++-+.. .+-+.+++...|...+..
T Consensus 575 t--rSpveLlAIGighDvtRyYrrav---------tiVdaeeL~gamteqLa~ 616 (620)
T COG4547 575 T--RSPVELLAIGIGHDVTRYYRRAV---------TIVDAEELAGAMTEQLAA 616 (620)
T ss_pred c--CCchhheeeecccccchhhhhhe---------eEecHHHhchHHHHHHHH
Confidence 2 23578999999999888775532 233466666555554443
No 66
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=98.00 E-value=0.00013 Score=75.99 Aligned_cols=170 Identities=14% Similarity=0.188 Sum_probs=114.4
Q ss_pred CCceEEEEEcCCCCCCCC-----ChHHHHHHHHHHHHhCC---CCCeEEEEEECCce-EEeeccccccCHHHHHHHHHHH
Q 004349 325 FKKDVIFIVDISGSMQGK-----PLEDTKNALAVALSKLD---PGDSFNIVAFNGET-YLFSTSMELATKEAVERAHQWI 395 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~-----~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~-~~~~~~~~~~t~~~i~~a~~~I 395 (759)
.=+.+++|||.|.+|... ++..+.+.+..|+..+- |-.+++||.-.+.. +.+...+ .+.+..-.++.
T Consensus 59 iiRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~lt--gnp~~hI~aL~-- 134 (378)
T KOG2807|consen 59 IIRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLT--GNPRIHIHALK-- 134 (378)
T ss_pred hheeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhc--CCHHHHHHHHh--
Confidence 447899999999999864 44555556666666543 44588998887653 4443321 24444444444
Q ss_pred hccccCCCCCchHHHHHHHHHHHhcCCCCC-C-EEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHH
Q 004349 396 GINFIAGGSTNICAPLTKAVEMLTNSRGSI-P-IIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYF 473 (759)
Q Consensus 396 ~~~~~~~GgT~i~~aL~~A~~~l~~~~~~~-~-~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~l 473 (759)
......|...+..||+.|.+.|+..++.. | ++|+++.=...|..++.+.+..... .++|+..||+... -..
T Consensus 135 -~~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi~~tI~~lk~----~kIRvsvIgLsaE--v~i 207 (378)
T KOG2807|consen 135 -GLTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDIYETIDKLKA----YKIRVSVIGLSAE--VFI 207 (378)
T ss_pred -cccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccHHHHHHHHHh----hCeEEEEEeechh--HHH
Confidence 23357899999999999999998876654 4 4455544334466666666655432 3589999999864 567
Q ss_pred HHHHHhhcCCEEEEEcCCchHHHHHHHHHHhhhcce
Q 004349 474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSV 509 (759)
Q Consensus 474 L~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~~~p~ 509 (759)
.+.|+++++|.|..+-|...+.+ ++.+...|.
T Consensus 208 cK~l~kaT~G~Y~V~lDe~Hlke----Ll~e~~~Pp 239 (378)
T KOG2807|consen 208 CKELCKATGGRYSVALDEGHLKE----LLLEHTHPP 239 (378)
T ss_pred HHHHHHhhCCeEEEEeCHHHHHH----HHHhcCCCC
Confidence 89999999999998888776654 444445443
No 67
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=97.97 E-value=0.00036 Score=73.11 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=103.4
Q ss_pred CCceEEEEEcCCCCC-CCCChHHHHHHHHHHHHhCCCC---CeEEEEEECCceEEee--ccc---------------cc-
Q 004349 325 FKKDVIFIVDISGSM-QGKPLEDTKNALAVALSKLDPG---DSFNIVAFNGETYLFS--TSM---------------EL- 382 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM-~g~~i~~aK~al~~~L~~L~~~---d~f~Ii~F~~~~~~~~--~~~---------------~~- 382 (759)
.|--++||||+|-.- +..-++.+++++...|+.++++ .+|+||+|++..+.+. ... .+
T Consensus 2 ~pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P~ 81 (244)
T cd01479 2 QPAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLPL 81 (244)
T ss_pred CCCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCCC
Confidence 456799999997533 2236899999999999999977 7999999999875431 100 00
Q ss_pred ---------cCHHHHHHHHHHHhccc--cCCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChH-----------
Q 004349 383 ---------ATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER----------- 440 (759)
Q Consensus 383 ---------~t~~~i~~a~~~I~~~~--~~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~----------- 440 (759)
...+.+.++++.|.... ....++.++.||+.|..+++... -.|++++.|.++.+.
T Consensus 82 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~G---GkIi~f~s~~pt~GpG~l~~~~~~~~ 158 (244)
T cd01479 82 PDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETG---GKIIVFQSSLPTLGAGKLKSREDPKL 158 (244)
T ss_pred CcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcC---CEEEEEeCCCCCcCCcccccCccccc
Confidence 01345556666664221 23356788999999999998533 357778878753110
Q ss_pred --------------HHHHHHHHHHHcCCCCCceEEEEEec-CCcCHHHHHHHHhhcCCEEEEEc
Q 004349 441 --------------QICDAMKSRLTNGGSICPRIYTFGIG-SYCNHYFLRMLAMISRGYYGAAY 489 (759)
Q Consensus 441 --------------~i~~~v~~~~~~~~~~~~rI~t~GiG-~~~n~~lL~~LA~~~gG~~~~v~ 489 (759)
...+.+...+.+ .++-|..|... ..++-.-|..|++.+||..++..
T Consensus 159 ~~~~~e~~~~~p~~~fY~~la~~~~~---~~isvDlF~~~~~~~dla~l~~l~~~TGG~v~~y~ 219 (244)
T cd01479 159 LSTDKEKQLLQPQTDFYKKLALECVK---SQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYP 219 (244)
T ss_pred cCchhhhhhcCcchHHHHHHHHHHHH---cCeEEEEEEccCcccChhhhhhhhhhcCceEEEEC
Confidence 112222222222 23444445443 34677889999999999988877
No 68
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=97.73 E-value=0.0014 Score=65.80 Aligned_cols=172 Identities=16% Similarity=0.200 Sum_probs=112.4
Q ss_pred CceEEEEEcCCCCCCCCChHHHHHHHHHHHHh------CC--C--CCeEEEEEECCc--eEEeeccccccCHHHHHHHHH
Q 004349 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSK------LD--P--GDSFNIVAFNGE--TYLFSTSMELATKEAVERAHQ 393 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~------L~--~--~d~f~Ii~F~~~--~~~~~~~~~~~t~~~i~~a~~ 393 (759)
..+++|.+|.|+||.....+.-++.+...|.+ +. + .-.++++.|++. .....+++...+.++.+.+-.
T Consensus 3 dlaLvLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A~ 82 (205)
T PF06707_consen 3 DLALVLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFAA 82 (205)
T ss_pred cceeeeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHHH
Confidence 35789999999999987666666655544422 21 2 236788888874 456667777778888888777
Q ss_pred HHhcc-ccCCCCCchHHHHHHHHHHHhcCCC--CCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCc-
Q 004349 394 WIGIN-FIAGGSTNICAPLTKAVEMLTNSRG--SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC- 469 (759)
Q Consensus 394 ~I~~~-~~~~GgT~i~~aL~~A~~~l~~~~~--~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~- 469 (759)
.|... ....++|.|..||..+..++.+.+. .++.|=+-.||..+......+..+..... .++.|..+.|+...
T Consensus 83 ~l~~~~r~~~~~Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~---~GitINgL~I~~~~~ 159 (205)
T PF06707_consen 83 RLRAAPRRFGGRTAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVA---AGITINGLAILDDDP 159 (205)
T ss_pred HHHhCCCCCCCCchHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHH---CCeEEeeeEecCCCC
Confidence 77633 2345779999999999999987543 34566778899976653333344444433 35788888887543
Q ss_pred ------CHHHHHHHHhhcCC-EEEEEcCCchHHHHHHHH
Q 004349 470 ------NHYFLRMLAMISRG-YYGAAYDLDSIEIQMQKL 501 (759)
Q Consensus 470 ------n~~lL~~LA~~~gG-~~~~v~d~~~l~~~l~~~ 501 (759)
+.++-+.+- .|.| ....+.+.++..++|.+-
T Consensus 160 ~~~~~L~~yy~~~VI-gGpgAFV~~a~~~~df~~AirrK 197 (205)
T PF06707_consen 160 FGGADLDAYYRRCVI-GGPGAFVETARGFEDFAEAIRRK 197 (205)
T ss_pred CccccHHHHHhhhcc-cCCCceEEEcCCHHHHHHHHHHH
Confidence 233333332 2334 444556667777766543
No 69
>PRK05325 hypothetical protein; Provisional
Probab=97.67 E-value=0.0011 Score=73.10 Aligned_cols=161 Identities=15% Similarity=0.181 Sum_probs=100.1
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHH---HHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccC
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNA---LAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~a---l~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~ 401 (759)
...-+++++|+||||....-+.||.. |..+|..- -.++-|+--.++...+ ..+.+ +|. ...-
T Consensus 221 s~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~--Y~~vEvvFI~H~t~Ak-----EVdEe------eFF--~~~e 285 (401)
T PRK05325 221 SQAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRK--YENVEVVFIRHHTEAK-----EVDEE------EFF--YSRE 285 (401)
T ss_pred CcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhc--cCceEEEEEeecCcee-----EcCHH------Hcc--ccCC
Confidence 44557789999999998887888885 34445432 2455555555543322 11332 222 2356
Q ss_pred CCCCchHHHHHHHHHHHhcC---CCCCCEEEEEeCCCCCC--hHHHHHHHHHHHHcCCCCCceEEEEE-ecCCc--CHHH
Q 004349 402 GGSTNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVED--ERQICDAMKSRLTNGGSICPRIYTFG-IGSYC--NHYF 473 (759)
Q Consensus 402 ~GgT~i~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~~--~~~i~~~v~~~~~~~~~~~~rI~t~G-iG~~~--n~~l 473 (759)
.|||-+..|++.|.+++..+ ....-..+-.|||..|+ .......+.+.+-. ..+.|+.+ |+... +..+
T Consensus 286 sGGT~vSSA~~l~~eIi~~rYpp~~wNIY~f~aSDGDNw~~D~~~~~~ll~~~llp----~~~~f~Y~Ev~~~~~~~~~l 361 (401)
T PRK05325 286 SGGTIVSSAYKLALEIIEERYPPAEWNIYAFQASDGDNWSSDNPRCVELLREELLP----VCNYFAYIEVTPRAYRHQTL 361 (401)
T ss_pred CCCeEehHHHHHHHHHHHhhCCHhHCeeEEEEcccCCCcCCCCHHHHHHHHHHHHH----HhhheEEEEecCCCCCchHH
Confidence 79999999999999999753 12234788899999753 44555666534321 12344443 44432 4566
Q ss_pred HHHHHhhcCC----EEEEEcCCchHHHHHHHHHHh
Q 004349 474 LRMLAMISRG----YYGAAYDLDSIEIQMQKLFTR 504 (759)
Q Consensus 474 L~~LA~~~gG----~~~~v~d~~~l~~~l~~~l~~ 504 (759)
++.......- ....|.+.+++-..+..+|.+
T Consensus 362 ~~~y~~i~~~~~~f~~~~I~~~~dIyp~~r~lf~k 396 (401)
T PRK05325 362 WREYERLQDTFPNFAMQRIRDKEDIYPVFRELFKK 396 (401)
T ss_pred HHHHHHhhccCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 6666554443 345677888888888888754
No 70
>PLN00162 transport protein sec23; Provisional
Probab=97.62 E-value=0.032 Score=67.72 Aligned_cols=178 Identities=13% Similarity=0.162 Sum_probs=111.7
Q ss_pred CCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEee--c----------cccccC------
Q 004349 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFS--T----------SMELAT------ 384 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~--~----------~~~~~t------ 384 (759)
.+.|.-++||||+| +....++..|+++...|+.|+++.+|+||+|++.++.+. . .....+
T Consensus 121 ~~~pp~fvFvID~s--~~~~~l~~lk~sl~~~L~~LP~~a~VGlITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~~l~~ 198 (761)
T PLN00162 121 APSPPVFVFVVDTC--MIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILE 198 (761)
T ss_pred CCCCcEEEEEEecc--hhHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCCCcceEEecCCccCCHHHHHH
Confidence 34667899999998 555678999999999999999999999999999875432 1 000011
Q ss_pred --------------------------------------HHHHHHHHHHHhcccc--C---CCCCchHHHHHHHHHHHhcC
Q 004349 385 --------------------------------------KEAVERAHQWIGINFI--A---GGSTNICAPLTKAVEMLTNS 421 (759)
Q Consensus 385 --------------------------------------~~~i~~a~~~I~~~~~--~---~GgT~i~~aL~~A~~~l~~~ 421 (759)
...+..+++.|..... . .....++.||+.|..++...
T Consensus 199 ~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~ 278 (761)
T PLN00162 199 QLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGAC 278 (761)
T ss_pred HhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhc
Confidence 2345556665542210 1 12456899999999998642
Q ss_pred C-CCCCEEEEEeCCCCCChH------------------------------HHHHHHHHHHHcCCCCCceEEEEEecCCcC
Q 004349 422 R-GSIPIIFLVTDGAVEDER------------------------------QICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (759)
Q Consensus 422 ~-~~~~~IiLlTDG~~~~~~------------------------------~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n 470 (759)
. +..-.|++++-|-++.+. ...+.+...+.+ ....+.||+.+. +.++
T Consensus 279 ~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~-~gisvDlF~~s~-dqvg 356 (761)
T PLN00162 279 VPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVA-QGHVLDVFACSL-DQVG 356 (761)
T ss_pred cCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHH-cCceEEEEEccc-cccC
Confidence 1 223356677767643110 011112222221 223445555443 3467
Q ss_pred HHHHHHHHhhcCCEEEEEcCCc--hHHHHHHHHHHh
Q 004349 471 HYFLRMLAMISRGYYGAAYDLD--SIEIQMQKLFTR 504 (759)
Q Consensus 471 ~~lL~~LA~~~gG~~~~v~d~~--~l~~~l~~~l~~ 504 (759)
-.-|+.+++.+||..++..+.+ .+.+.+.+++.+
T Consensus 357 laem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~r 392 (761)
T PLN00162 357 VAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFER 392 (761)
T ss_pred HHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhcc
Confidence 8889999999999988876654 355556666654
No 71
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=97.45 E-value=0.004 Score=66.05 Aligned_cols=164 Identities=15% Similarity=0.139 Sum_probs=103.3
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEee--cc----------ccc----------
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFS--TS----------MEL---------- 382 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~--~~----------~~~---------- 382 (759)
.|--++||||+|- ....++.+|+++...|+.|+++.+|+||+|++.++.+. .. ...
T Consensus 2 ~pp~~vFviDvs~--~~~el~~l~~sl~~~L~~lP~~a~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~~~~~l 79 (267)
T cd01478 2 SPPVFLFVVDTCM--DEEELDALKESLIMSLSLLPPNALVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQIQDML 79 (267)
T ss_pred CCCEEEEEEECcc--CHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHHHHHHh
Confidence 3556999999975 45568999999999999999999999999999975432 10 000
Q ss_pred ----------------------------------cCHHHHHHHHHHHhccc-----cCCCCCchHHHHHHHHHHHhcC-C
Q 004349 383 ----------------------------------ATKEAVERAHQWIGINF-----IAGGSTNICAPLTKAVEMLTNS-R 422 (759)
Q Consensus 383 ----------------------------------~t~~~i~~a~~~I~~~~-----~~~GgT~i~~aL~~A~~~l~~~-~ 422 (759)
.....++.+++.|.... .......++.||+.|..++... +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~~~~ 159 (267)
T cd01478 80 GLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEACFP 159 (267)
T ss_pred ccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHhhcC
Confidence 01234555555554211 1224567899999999999732 1
Q ss_pred CCCCEEEEEeCCCCCChH------------------------------HHHHHHHHHHHcCCCCCceEEEEEecCCcCHH
Q 004349 423 GSIPIIFLVTDGAVEDER------------------------------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHY 472 (759)
Q Consensus 423 ~~~~~IiLlTDG~~~~~~------------------------------~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~ 472 (759)
...-.|++++-|-++.+. +..+.+...+. .....+.+|..+. +.++-.
T Consensus 160 ~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~-~~~vsvDlF~~s~-d~vgla 237 (267)
T cd01478 160 NTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLA-ANGHAVDIFAGCL-DQVGLL 237 (267)
T ss_pred CCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHH-hCCeEEEEEeccc-cccCHH
Confidence 122356777766543100 01111111111 1233445555553 346888
Q ss_pred HHHHHHhhcCCEEEEEcCCc
Q 004349 473 FLRMLAMISRGYYGAAYDLD 492 (759)
Q Consensus 473 lL~~LA~~~gG~~~~v~d~~ 492 (759)
-|..|++.+||..++..+..
T Consensus 238 em~~l~~~TGG~v~~~~~f~ 257 (267)
T cd01478 238 EMKVLVNSTGGHVVLSDSFT 257 (267)
T ss_pred HHHHHHHhcCcEEEEeCCcc
Confidence 99999999999998877664
No 72
>PTZ00395 Sec24-related protein; Provisional
Probab=97.41 E-value=0.03 Score=69.05 Aligned_cols=227 Identities=12% Similarity=0.131 Sum_probs=130.5
Q ss_pred CCCCceEEEEEcCCC-CCCCCChHHHHHHHHHHHHhCC-CCCeEEEEEECCceEEee--c--------------------
Q 004349 323 KVFKKDVIFIVDISG-SMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFS--T-------------------- 378 (759)
Q Consensus 323 ~~~~~dvvfVlD~SG-SM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~~~~--~-------------------- 378 (759)
...|-.++||||+|- |+...-+..+-++++..|++|+ +..+|+||+|++..+-|. +
T Consensus 949 ~p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQM 1028 (1560)
T PTZ00395 949 NMLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQV 1028 (1560)
T ss_pred CCCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCCCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCceE
Confidence 356778999999994 5555566778888888888886 457999999999864321 1
Q ss_pred ------------cc-----c--ccCHHHHHHHHHHHhcccc--CCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCC
Q 004349 379 ------------SM-----E--LATKEAVERAHQWIGINFI--AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE 437 (759)
Q Consensus 379 ------------~~-----~--~~t~~~i~~a~~~I~~~~~--~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~ 437 (759)
.. + ....+.++.+++.|..... ...+.-++.||+.|+.+++...+..++++|.+ ..++
T Consensus 1029 LVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GGGGKIiVF~S-SLPn 1107 (1560)
T PTZ00395 1029 IVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNGLGSICMFYT-TTPN 1107 (1560)
T ss_pred EeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCCCceEEEEEc-CCCC
Confidence 00 0 0124556677776653332 23567889999999999987543345555554 3332
Q ss_pred C--------------------hHHHHHHHHHHHHcCCCCCceEEEEEecC-CcCHHHHHHHHhhcCCEEEEEcCCc---h
Q 004349 438 D--------------------ERQICDAMKSRLTNGGSICPRIYTFGIGS-YCNHYFLRMLAMISRGYYGAAYDLD---S 493 (759)
Q Consensus 438 ~--------------------~~~i~~~v~~~~~~~~~~~~rI~t~GiG~-~~n~~lL~~LA~~~gG~~~~v~d~~---~ 493 (759)
- .....+.+...+.+ ..+.+-+|.++-.. +++-.-|..|++.+||..++..... +
T Consensus 1108 iGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk-~qISVDLFLfSsqYvDVDVATLg~Lsr~TGGqlyyYPnFna~rD 1186 (1560)
T PTZ00395 1108 CGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYA-FNISVDIFIISSNNVRVCVPSLQYVAQNTGGKILFVENFLWQKD 1186 (1560)
T ss_pred CCCCcccccccccccccccccchHHHHHHHHHHHh-cCCceEEEEccCcccccccccccchhcccceeEEEeCCCccccc
Confidence 1 11122222222222 23455566554221 1234568899999999987766542 1
Q ss_pred HHHHHHHHHHhhhc-ceEe--eEEEEecCCCcceeec-------------cCCCCCCCCCCcEEEEEEEcCCCC
Q 004349 494 IEIQMQKLFTRGFS-SVLA--NIAIDTLKDLDEFEMY-------------PSRIPDLSSESPLIVSGRYQGKFP 551 (759)
Q Consensus 494 l~~~l~~~l~~~~~-p~l~--di~l~~~~~~~~~ev~-------------P~~i~~lf~g~~liv~Gr~~g~~~ 551 (759)
-.....++.+.+.. +... -++|....++.+...+ --.+|.+-.++.+.|--++.++..
T Consensus 1187 ~~KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~DEkL~ 1260 (1560)
T PTZ00395 1187 YKEIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKKLFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYSDISE 1260 (1560)
T ss_pred HHHHHHHHHHHhhccceeeEEEEEEECCCCeEEEEEeccCCccccccccccccccccCCCceEEEEEEeccccC
Confidence 22333344444433 2222 2344444443332322 123567777888877777766543
No 73
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=97.36 E-value=0.0049 Score=67.00 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=90.0
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHH---HHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccC
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNA---LAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~a---l~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~ 401 (759)
...-+++++|+||||....-+.||.. |..+|..- -.++-|+--.+++... ..+.+ ++. ...-
T Consensus 201 s~AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~--Y~~VeivFI~H~t~Ak-----EVdEe------eFF--~~~E 265 (371)
T TIGR02877 201 SNAVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTK--YENVEICFISHHTEAK-----EVTEE------EFF--HKGE 265 (371)
T ss_pred CcEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhc--cCceEEEEEeecCeeE-----EcCHH------Hhc--ccCC
Confidence 44557789999999998877888875 33445432 2355555555544322 12332 222 2356
Q ss_pred CCCCchHHHHHHHHHHHhcC---CCCCCEEEEEeCCCCC--ChHHHHHHHHHHHHcCCCCCceEEEEE-ecC-CcCHHHH
Q 004349 402 GGSTNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVE--DERQICDAMKSRLTNGGSICPRIYTFG-IGS-YCNHYFL 474 (759)
Q Consensus 402 ~GgT~i~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~--~~~~i~~~v~~~~~~~~~~~~rI~t~G-iG~-~~n~~lL 474 (759)
.|||-+..|++.|.+.+..+ ....-..+-+|||..+ |.....+.+.+.+.. .+.|+.+ |+. .....++
T Consensus 266 sGGT~vSSA~~l~~eII~~rYpp~~wNIY~f~aSDGDNw~~D~~~c~~ll~~llp~-----~~~f~Y~Ei~~~~~~~~l~ 340 (371)
T TIGR02877 266 SGGTYCSSGYKKALEIIDERYNPARYNIYAFHFSDGDNLTSDNERAVKLVRKLLEV-----CNLFGYGEIMPYGYSNTLK 340 (371)
T ss_pred CCCeEehHHHHHHHHHHHhhCChhhCeeEEEEcccCCCccCCcHHHHHHHHHHHHh-----hheEEEEEecCCCCcchHH
Confidence 79999999999999999753 1223477889999975 344555666654321 2344332 333 2223344
Q ss_pred HH----HHhhcCCEEEEEcCCchHHHHHHHH
Q 004349 475 RM----LAMISRGYYGAAYDLDSIEIQMQKL 501 (759)
Q Consensus 475 ~~----LA~~~gG~~~~v~d~~~l~~~l~~~ 501 (759)
.. |.. .+=....|.+.+++-..+..+
T Consensus 341 ~~y~~~i~~-~~f~~~~I~~~~dIyp~~r~l 370 (371)
T TIGR02877 341 NKFKNEIKD-PNFVPLIIRDKEDLYPALKKF 370 (371)
T ss_pred HHHHhhhcC-CCeEEEEeCCHHHHHHHHHHh
Confidence 22 332 223334566666666655554
No 74
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=97.32 E-value=0.0063 Score=67.78 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=96.1
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHH---HHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccC
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNA---LAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~a---l~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~ 401 (759)
...-+++++|+||||...+-+.||.. |..+|..--.+..+-.|...+.+... +.+ ++. ...-
T Consensus 245 s~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A~EV-------dEe------~FF--~~~e 309 (421)
T PF04285_consen 245 SNAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEAKEV-------DEE------EFF--HSRE 309 (421)
T ss_pred CcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceEEe-------cHH------Hhc--ccCC
Confidence 44557789999999998877888875 34445433333344444444444332 222 222 2356
Q ss_pred CCCCchHHHHHHHHHHHhcC---CCCCCEEEEEeCCCCC--ChHHHHHHHHHHHHcCCCCCceEEEEE-ecCCcCHH---
Q 004349 402 GGSTNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVE--DERQICDAMKSRLTNGGSICPRIYTFG-IGSYCNHY--- 472 (759)
Q Consensus 402 ~GgT~i~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~--~~~~i~~~v~~~~~~~~~~~~rI~t~G-iG~~~n~~--- 472 (759)
.|||-+..|++.+.+++..+ ....-.++-+|||..+ |.......+.+.+-. ....|..+ |+....+.
T Consensus 310 sGGT~vSSA~~l~~~ii~erypp~~wNiY~~~~SDGDN~~~D~~~~~~ll~~~llp----~~~~f~Y~Ei~~~~~~~~~~ 385 (421)
T PF04285_consen 310 SGGTRVSSAYELALEIIEERYPPSDWNIYVFHASDGDNWSSDNERCVELLEEELLP----VCNYFGYGEITQPGRHSSWR 385 (421)
T ss_pred CCCeEehHHHHHHHHHHHhhCChhhceeeeEEcccCccccCCCHHHHHHHHHHHHH----hcCeEEEEEeccCccchHHH
Confidence 89999999999999999753 1224478899999975 344555666533321 12344442 33122222
Q ss_pred HHHHHHhhcCC-EEEEEcCCchHHHHHHHHHHh
Q 004349 473 FLRMLAMISRG-YYGAAYDLDSIEIQMQKLFTR 504 (759)
Q Consensus 473 lL~~LA~~~gG-~~~~v~d~~~l~~~l~~~l~~ 504 (759)
.++.+.....- ....|.+.+++-..+..+|.+
T Consensus 386 ~~~~~~~~~~~f~~~~i~~~~di~~~~r~~f~~ 418 (421)
T PF04285_consen 386 EYEELKESHDNFAMVRIREKEDIYPVFRELFKK 418 (421)
T ss_pred HHHHHhhcCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 34444433322 234577788898888888765
No 75
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.22 E-value=0.0051 Score=69.60 Aligned_cols=150 Identities=20% Similarity=0.240 Sum_probs=102.3
Q ss_pred CCceEEEEEcCCCCCCC---------------CChHHHHHHHHHHHHhCCCCCeEEEEEECCce------EEeecc-ccc
Q 004349 325 FKKDVIFIVDISGSMQG---------------KPLEDTKNALAVALSKLDPGDSFNIVAFNGET------YLFSTS-MEL 382 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g---------------~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~------~~~~~~-~~~ 382 (759)
...++++-||-+.|-.. ...++|..++-..|....++.+|--..||... ...+.. ..+
T Consensus 284 ~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~ 363 (529)
T KOG1327|consen 284 EQLNFTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNP 363 (529)
T ss_pred ceeeeEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCC
Confidence 34677888888877432 35667777777788888788899999999882 111111 000
Q ss_pred -----cCHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHHhcCC---CCCCEEEEEeCCCCCChHHHHHHHHHHHHcCC
Q 004349 383 -----ATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSR---GSIPIIFLVTDGAVEDERQICDAMKSRLTNGG 454 (759)
Q Consensus 383 -----~t~~~i~~a~~~I~~~~~~~GgT~i~~aL~~A~~~l~~~~---~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~ 454 (759)
..-+.+-+|-+..-.+++..|.|++..-|.++.+...+.. ...-+++++|||.+++..++.+++..+ .
T Consensus 364 ~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vTdm~~T~~AIV~A----S 439 (529)
T KOG1327|consen 364 EDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVTDMKETRDAIVSA----S 439 (529)
T ss_pred CCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCccccHHHHHHHHHhh----c
Confidence 1123344444444346778999999999999999887653 223377899999999988877766543 3
Q ss_pred CCCceEEEEEecCCcCHHHHHHHHh
Q 004349 455 SICPRIYTFGIGSYCNHYFLRMLAM 479 (759)
Q Consensus 455 ~~~~rI~t~GiG~~~n~~lL~~LA~ 479 (759)
.....|..||+|+. +...|+.|-.
T Consensus 440 ~lPlSIIiVGVGd~-df~~M~~lD~ 463 (529)
T KOG1327|consen 440 DLPLSIIIVGVGDA-DFDMMRELDG 463 (529)
T ss_pred cCCeEEEEEEeCCC-CHHHHHHhhc
Confidence 45677888999954 7777877744
No 76
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.015 Score=68.02 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=112.3
Q ss_pred eEEEEecCCCcccCCCCCceEEEEEcCCC-CCCCCChHHHHHHHHHHHHhCC--CCCeEEEEEECCceEEeecc------
Q 004349 309 MFCMYLLPGTAKSRKVFKKDVIFIVDISG-SMQGKPLEDTKNALAVALSKLD--PGDSFNIVAFNGETYLFSTS------ 379 (759)
Q Consensus 309 ~f~l~~~P~~~~~~~~~~~dvvfVlD~SG-SM~g~~i~~aK~al~~~L~~L~--~~d~f~Ii~F~~~~~~~~~~------ 379 (759)
.+.-++.|.+-.-+++.|.-++||+|+|- ||...-++.+++++..-|+.|+ +..+|++|+|++..+.+.-.
T Consensus 277 s~vE~iAP~eYmlR~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp 356 (887)
T KOG1985|consen 277 SVVEFIAPSEYMLRPPQPAVYVFLIDVSISAIKSGYLETVARSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQP 356 (887)
T ss_pred eeEEEecCcccccCCCCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCC
Confidence 35556778776667788999999999995 4554578889999999999998 55699999999987643210
Q ss_pred -------------------cc--ccCHHHHHHHHHHHhccccCC--CCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Q 004349 380 -------------------ME--LATKEAVERAHQWIGINFIAG--GSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAV 436 (759)
Q Consensus 380 -------------------~~--~~t~~~i~~a~~~I~~~~~~~--GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~ 436 (759)
.+ ...++.++.+++.+...++.. -+..++.||+.|++++....+ ++++|. -+.+
T Consensus 357 ~mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~~GG--ri~vf~-s~lP 433 (887)
T KOG1985|consen 357 QMMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGSTGG--RISVFQ-STLP 433 (887)
T ss_pred ceeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhhcCC--eEEEEe-ccCC
Confidence 00 012456777777776554443 466899999999999987544 344443 3333
Q ss_pred CCh---------------HHHH-------HHHHHHHHcCCCCCceEEEEEec-CCcCHHHHHHHHhhcCCEEEEEcC
Q 004349 437 EDE---------------RQIC-------DAMKSRLTNGGSICPRIYTFGIG-SYCNHYFLRMLAMISRGYYGAAYD 490 (759)
Q Consensus 437 ~~~---------------~~i~-------~~v~~~~~~~~~~~~rI~t~GiG-~~~n~~lL~~LA~~~gG~~~~v~d 490 (759)
+-+ .+.. ..-++....-....+-|--|-+. .+.|-.-|..|++.+||..++-..
T Consensus 434 nlG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~ 510 (887)
T KOG1985|consen 434 NLGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPS 510 (887)
T ss_pred CCCccccccccccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCceeEEccC
Confidence 200 0000 11111111111122334444443 345667899999999999776543
No 77
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.14 E-value=0.0029 Score=67.97 Aligned_cols=109 Identities=17% Similarity=0.271 Sum_probs=65.8
Q ss_pred CCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC-CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccc-c
Q 004349 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF-I 400 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~-~ 400 (759)
+..+..++++.|+||||++- . .....++..|. .-.++-+..|++.-........ ....+.|+..+.... .
T Consensus 215 r~~~~~lvvL~DVSGSm~~y----s-~~~L~l~hAl~q~~~R~~~F~F~TRLt~vT~~l~---~rD~~~Al~~~~a~v~d 286 (395)
T COG3552 215 RRRKPPLVVLCDVSGSMSGY----S-RIFLHLLHALRQQRSRVHVFLFGTRLTRVTHMLR---ERDLEDALRRLSAQVKD 286 (395)
T ss_pred ccCCCCeEEEEecccchhhh----H-HHHHHHHHHHHhcccceeEEEeechHHHHHHHhc---cCCHHHHHHHHHhhccc
Confidence 34567899999999999852 1 12222222222 2345669999988654443332 333445555554222 3
Q ss_pred CCCCCchHHHHHHHHHHHhcC-CCCCCEEEEEeCCCCCCh
Q 004349 401 AGGSTNICAPLTKAVEMLTNS-RGSIPIIFLVTDGAVEDE 439 (759)
Q Consensus 401 ~~GgT~i~~aL~~A~~~l~~~-~~~~~~IiLlTDG~~~~~ 439 (759)
.+|||.|++.+..-++..... -.....|+++|||...+.
T Consensus 287 w~ggTrig~tl~aF~~~~~~~~L~~gA~VlilsDg~drd~ 326 (395)
T COG3552 287 WDGGTRIGNTLAAFLRRWHGNVLSGGAVVLILSDGLDRDD 326 (395)
T ss_pred ccCCcchhHHHHHHHccccccccCCceEEEEEecccccCC
Confidence 579999999887655542221 122358999999997544
No 78
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=97.07 E-value=0.024 Score=62.87 Aligned_cols=188 Identities=14% Similarity=0.182 Sum_probs=106.0
Q ss_pred eEEEEecCCCcccCCCCCceEEEEEcCCCCCCCCChHHHHHHHHHHH---HhCCCCCeEEEEEECCceE-Eeec------
Q 004349 309 MFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVAL---SKLDPGDSFNIVAFNGETY-LFST------ 378 (759)
Q Consensus 309 ~f~l~~~P~~~~~~~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L---~~L~~~d~f~Ii~F~~~~~-~~~~------ 378 (759)
.|.+.+.+. +..|.|++|++|.|+||.. .++.+|+....+. +.+..+-|+++-+|-+... .+..
T Consensus 87 ~f~~~~~~a-----~~yPvDLYyLMDlS~SM~d-dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l 160 (423)
T smart00187 87 NFTLTVRQA-----EDYPVDLYYLMDLSYSMKD-DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKL 160 (423)
T ss_pred EEEEEEEec-----ccCccceEEEEeCCccHHH-HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHh
Confidence 455555443 3579999999999999985 6777777655554 4555677999988877532 1110
Q ss_pred --------------c----ccccCHHHHHHHHHHHhccccCCCCCch----HHHHHHHH---HHHhcCCCCCCEEEEEeC
Q 004349 379 --------------S----MELATKEAVERAHQWIGINFIAGGSTNI----CAPLTKAV---EMLTNSRGSIPIIFLVTD 433 (759)
Q Consensus 379 --------------~----~~~~t~~~i~~a~~~I~~~~~~~GgT~i----~~aL~~A~---~~l~~~~~~~~~IiLlTD 433 (759)
. ..+.| ++..+..+.++ .....|+-+- .+||..|. +.+.-+++..+.+||.||
T Consensus 161 ~~PC~~~~~~c~p~f~f~~~L~LT-~~~~~F~~~V~-~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TD 238 (423)
T smart00187 161 ENPCPNYNLTCEPPYGFKHVLSLT-DDTDEFNEEVK-KQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTD 238 (423)
T ss_pred cCCCcCCCCCcCCCcceeeeccCC-CCHHHHHHHHh-hceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcC
Confidence 0 00011 13344444444 3344444432 34555444 333334456789999999
Q ss_pred CCCC---C----------------------------hHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcC
Q 004349 434 GAVE---D----------------------------ERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISR 482 (759)
Q Consensus 434 G~~~---~----------------------------~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~g 482 (759)
+... | +-..+..+.+.+.+.. -..||+|-=- ...+.+.|+..=.
T Consensus 239 a~fH~AGDGkLaGIv~PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~n--I~~IFAVT~~---~~~~Y~~Ls~lip 313 (423)
T smart00187 239 AGFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENN--INPIFAVTKK---QVSLYKELSALIP 313 (423)
T ss_pred CCccccCCcceeeEecCCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcC--ceEEEEEccc---chhHHHHHHHhcC
Confidence 7631 0 0012334444444322 1356666321 2345677777656
Q ss_pred CEEEE--EcCCchHHHHHHHHHHhhhcce
Q 004349 483 GYYGA--AYDLDSIEIQMQKLFTRGFSSV 509 (759)
Q Consensus 483 G~~~~--v~d~~~l~~~l~~~l~~~~~p~ 509 (759)
|...- ..|.+.+.+.+...+.++.+.+
T Consensus 314 gs~vg~Ls~DSsNIv~LI~~aY~~i~S~V 342 (423)
T smart00187 314 GSSVGVLSEDSSNVVELIKDAYNKISSRV 342 (423)
T ss_pred cceeeecccCcchHHHHHHHHHHhhceEE
Confidence 66543 3566778887888777776543
No 79
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=96.91 E-value=0.0041 Score=71.29 Aligned_cols=103 Identities=21% Similarity=0.354 Sum_probs=75.9
Q ss_pred ceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCC-eEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCCCC
Q 004349 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGD-SFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST 405 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d-~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT 405 (759)
.+.+-|.|+||||.|.+++.+. +|..++..+..+. +=.+|+|+++.+... .+..++.+-++++. ....++.|
T Consensus 341 ~n~iav~DvSGSM~~~pm~vai-aLgll~ae~~~~pf~~~~ITFs~~P~~~~-----i~g~~l~ekv~~~~-~~~wg~nT 413 (534)
T PF11443_consen 341 ENCIAVCDVSGSMSGPPMDVAI-ALGLLIAELNKGPFKGRFITFSENPQLHK-----IKGDTLREKVRFIR-RMDWGMNT 413 (534)
T ss_pred cceEEEEecCCccCccHHHHHH-HHHHHHHHhcccccCCeEEeecCCceEEE-----ecCCCHHHHHHHHH-hCCcccCC
Confidence 6899999999999999887764 5666777775433 335899999976543 12336778888887 67888999
Q ss_pred chHHHHHHHHHHHhcCC----CCCCEEEEEeCCCC
Q 004349 406 NICAPLTKAVEMLTNSR----GSIPIIFLVTDGAV 436 (759)
Q Consensus 406 ~i~~aL~~A~~~l~~~~----~~~~~IiLlTDG~~ 436 (759)
|+..+++..+....... .=++.||++||=+.
T Consensus 414 n~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeF 448 (534)
T PF11443_consen 414 NFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEF 448 (534)
T ss_pred cHHHHHHHHHHHHHHcCCChHHCCceEEEEecccc
Confidence 99999988877654322 12468999998664
No 80
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.21 Score=59.08 Aligned_cols=290 Identities=15% Similarity=0.182 Sum_probs=154.9
Q ss_pred CCCCceEEEEEcCCC--CCCCCChHHHHHHHHHHHHhCC---CCCeEEEEEECCceEEeecc------------------
Q 004349 323 KVFKKDVIFIVDISG--SMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTS------------------ 379 (759)
Q Consensus 323 ~~~~~dvvfVlD~SG--SM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~------------------ 379 (759)
...+-.+||+||+|- .|.| -...+-++++.+|..|. ++.+++|++|++..+.|...
T Consensus 414 ~p~ppafvFmIDVSy~Ai~~G-~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvf 492 (1007)
T KOG1984|consen 414 PPKPPAFVFMIDVSYNAISNG-AVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVF 492 (1007)
T ss_pred CCCCceEEEEEEeehhhhhcc-hHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeecccccc
Confidence 356788999999984 3444 34566678888888876 46799999999987643211
Q ss_pred -------cc--ccCHHHHHHHHHHHhccccCCCC--CchHHHHHHHHHHHhcCCCCCCEEEEEe----------------
Q 004349 380 -------ME--LATKEAVERAHQWIGINFIAGGS--TNICAPLTKAVEMLTNSRGSIPIIFLVT---------------- 432 (759)
Q Consensus 380 -------~~--~~t~~~i~~a~~~I~~~~~~~Gg--T~i~~aL~~A~~~l~~~~~~~~~IiLlT---------------- 432 (759)
.+ ..+..-++.+++.|...++..+- |-+..+|+.|+..++... ..+.++|.|
T Consensus 493 vPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~-gGKl~vF~s~Lpt~g~g~kl~~r~D 571 (1007)
T KOG1984|consen 493 VPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAAD-GGKLFVFHSVLPTAGAGGKLSNRDD 571 (1007)
T ss_pred cccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccC-CceEEEEecccccccCcccccccch
Confidence 00 11345677788888755555554 456899999999887643 223333322
Q ss_pred ------CCCCC---ChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCCchH---HHHHHH
Q 004349 433 ------DGAVE---DERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSI---EIQMQK 500 (759)
Q Consensus 433 ------DG~~~---~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~~~l---~~~l~~ 500 (759)
|++-+ ..+.....+.+..-+.+ ..+.||.+.-+ .+|..-|..+.+.+||..+........ ...+..
T Consensus 572 ~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g-~svDlF~t~~a-yvDvAtlg~v~~~TgG~vy~Y~~F~a~~D~~rl~nD 649 (1007)
T KOG1984|consen 572 RRLIGTDKEKNLLQPQDKTYTTLAKEFVESG-CSVDLFLTPNA-YVDVATLGVVPALTGGQVYKYYPFQALTDGPRLLND 649 (1007)
T ss_pred hhhhcccchhhccCcchhHHHHHHHHHHHhC-ceEEEEEcccc-eeeeeeecccccccCceeEEecchhhcccHHHHHHH
Confidence 22210 01122333333333222 34555555222 245556777788999997766554322 244555
Q ss_pred HHHhhhcceEeeEEEEe--cCCCcceee-------ccC--CCCCCCCCCcEEEEEEEcCCCCCeE-------EEEEEeCC
Q 004349 501 LFTRGFSSVLANIAIDT--LKDLDEFEM-------YPS--RIPDLSSESPLIVSGRYQGKFPDTL-------KAKGFLGD 562 (759)
Q Consensus 501 ~l~~~~~p~l~di~l~~--~~~~~~~ev-------~P~--~i~~lf~g~~liv~Gr~~g~~~~~v-------~l~G~~~~ 562 (759)
+...+..+.--+..++. ..+....+. .+. +++.|-....+.+.-++..+..... .+--+..+
T Consensus 650 L~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq~~s~~~fQ~AlLYTti~G 729 (1007)
T KOG1984|consen 650 LVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQDGSDVHFQTALLYTTIDG 729 (1007)
T ss_pred HHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEeccccccCCcceeEEEEEEEeccCC
Confidence 65556555544443332 233222222 222 3566667778888777776544321 11112223
Q ss_pred ccc-EEEEEeecc----------ccCCchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhC
Q 004349 563 LSN-FVVELKLQL----------AKDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVSKMSVQTG 616 (759)
Q Consensus 563 ~~~-~~~~l~~~~----------~~~~~l~~lwA~~~I~~L~~~~~~~~~~~~k~eIv~LS~~y~ 616 (759)
.+. -.+.+.+.- .+-.++-...||..+..+.+...-.-++.+..+++++=..|+
T Consensus 730 ~RR~Rv~Nlsl~~ts~l~~lyr~~~~d~l~a~maK~a~~~i~~~~lk~vre~l~~~~~~iL~~YR 794 (1007)
T KOG1984|consen 730 QRRLRVLNLSLAVTSQLSELYRSADTDPLIAIMAKQAAKAILDKPLKEVREQLVSQCAQILASYR 794 (1007)
T ss_pred ceeEEEEecchhhhhhHHHHHHhcCccHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 222 122222211 122345666677776665554333334455555555544444
No 81
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=96.86 E-value=0.014 Score=55.97 Aligned_cols=120 Identities=17% Similarity=0.253 Sum_probs=81.9
Q ss_pred CChHHHHHHHHHHHHhCCCCCeEEEEEECCceE---Ee---eccc---c---ccCHHH-HHHHHHHHhccccCCCCCchH
Q 004349 342 KPLEDTKNALAVALSKLDPGDSFNIVAFNGETY---LF---STSM---E---LATKEA-VERAHQWIGINFIAGGSTNIC 408 (759)
Q Consensus 342 ~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~---~~---~~~~---~---~~t~~~-i~~a~~~I~~~~~~~GgT~i~ 408 (759)
...++|-.++-.+|.....+.+|-+..|+.... .. ++.. . -..-+. ++.-.+.+. ..+..|-|++.
T Consensus 11 N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~-~v~l~GPT~fa 89 (146)
T PF07002_consen 11 NPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALP-KVQLSGPTNFA 89 (146)
T ss_pred CHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhh-heEECCCccHH
Confidence 356788888888898888888999999998632 11 1111 0 011222 222233333 56778999999
Q ss_pred HHHHHHHHHHhc---CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEec
Q 004349 409 APLTKAVEMLTN---SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIG 466 (759)
Q Consensus 409 ~aL~~A~~~l~~---~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG 466 (759)
.-|++|.+.... .....-.++++|||.++|..+..+.+.+. ....+.|..||+|
T Consensus 90 piI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~A----S~~PlSIIiVGVG 146 (146)
T PF07002_consen 90 PIINHAAKIAKQSNQNGQQYFILLILTDGQITDMEETIDAIVEA----SKLPLSIIIVGVG 146 (146)
T ss_pred HHHHHHHHHHhhhccCCceEEEEEEecccccccHHHHHHHHHHH----ccCCeEEEEEEeC
Confidence 999999998763 22223478899999999988888777655 2345778888887
No 82
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=96.70 E-value=0.56 Score=55.11 Aligned_cols=311 Identities=15% Similarity=0.161 Sum_probs=154.8
Q ss_pred EEEecCCCcccCCCCCceEEEEEcCCC-CCCCCChHHHHHHHHHHHHhCC---CCCeEEEEEECCceEEeeccccc----
Q 004349 311 CMYLLPGTAKSRKVFKKDVIFIVDISG-SMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMEL---- 382 (759)
Q Consensus 311 ~l~~~P~~~~~~~~~~~dvvfVlD~SG-SM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~---- 382 (759)
.-++.|+.-......|..+||+||+|- ||...-...+.+++..-+..++ +..+++||.|++..+.|......
T Consensus 261 vdf~ap~~Y~~~~p~P~~yvFlIDVS~~a~~~g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~~~~~ 340 (861)
T COG5028 261 VDFLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQM 340 (861)
T ss_pred eEEecccceeeccCCCCEEEEEEEeehHhhhcchHHHHHHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCCccce
Confidence 345667665445566899999999993 4443344555555555555443 46699999999987765421110
Q ss_pred ------------cC-----------HHHHHHHHHHHhccccCCCCC--chHHHHHHHHHHHhcCCCCCCEEEEEeC----
Q 004349 383 ------------AT-----------KEAVERAHQWIGINFIAGGST--NICAPLTKAVEMLTNSRGSIPIIFLVTD---- 433 (759)
Q Consensus 383 ------------~t-----------~~~i~~a~~~I~~~~~~~GgT--~i~~aL~~A~~~l~~~~~~~~~IiLlTD---- 433 (759)
.. ...++..++++....+..+-+ .++.||+.|..++....+ +.|.+++-
T Consensus 341 ~~vsdld~pFlPf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~~GG--kii~~~stlPn~ 418 (861)
T COG5028 341 LIVSDLDEPFLPFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGG--KIIVFLSTLPNM 418 (861)
T ss_pred eeecccccccccCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhccCc--eEEEEeecCCCc
Confidence 00 122334556555444444544 578999999988765333 45555522
Q ss_pred --CCCC----Ch-------HHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCC--c---hHH
Q 004349 434 --GAVE----DE-------RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDL--D---SIE 495 (759)
Q Consensus 434 --G~~~----~~-------~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~--~---~l~ 495 (759)
|... ++ +...+.+.....+. .+.+.+|...-+ ..+-.-|..+++.++|..++-... + +..
T Consensus 419 G~Gkl~~r~d~e~~ll~c~d~fYk~~a~e~~k~-gIsvd~Flt~~~-yidvaTls~l~~~T~G~~~~Yp~f~~~~~~d~~ 496 (861)
T COG5028 419 GIGKLQLREDKESSLLSCKDSFYKEFAIECSKV-GISVDLFLTSED-YIDVATLSHLCRYTGGQTYFYPNFSATRPNDAT 496 (861)
T ss_pred ccccccccccchhhhccccchHHHHHHHHHHHh-cceEEEEecccc-ccchhhhcchhhccCcceEEcCCcccCCchhHH
Confidence 3332 11 11122232222222 233444444322 346677888999999997665432 2 222
Q ss_pred HHHHHHHHhhhcceE--eeEEEEecCCCcceee-------cc--CCCCCCCCCCcEEEEEEEcCCCCC-e----EEEEEE
Q 004349 496 IQMQKLFTRGFSSVL--ANIAIDTLKDLDEFEM-------YP--SRIPDLSSESPLIVSGRYQGKFPD-T----LKAKGF 559 (759)
Q Consensus 496 ~~l~~~l~~~~~p~l--~di~l~~~~~~~~~ev-------~P--~~i~~lf~g~~liv~Gr~~g~~~~-~----v~l~G~ 559 (759)
....++.+.+....- .=+++....+...... .+ -.++.++..+.+.+--.|.++... . +-+--+
T Consensus 497 kl~~dL~~~ls~~~gy~~~~rvR~S~glr~s~fyGnf~~rs~dl~~F~tm~rd~Sl~~~~sid~~l~~~~v~fQvAlL~T 576 (861)
T COG5028 497 KLANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFYGNFFNRSSDLCAFSTMPRDTSLLVEFSIDEKLMTSDVYFQVALLYT 576 (861)
T ss_pred HHHHHHHHhhhhhhhhheeeEeeccCceehhhhhccccccCcccccccccCCCceEEEEEEecccccCCceEEEEEEEee
Confidence 222333332221110 0112221212111111 11 134566777777776667654332 1 112222
Q ss_pred eCCc-c-cEEEEEeeccc----------cCCchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhC--CCCccceEE
Q 004349 560 LGDL-S-NFVVELKLQLA----------KDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVSKMSVQTG--VLCEYTRMI 625 (759)
Q Consensus 560 ~~~~-~-~~~~~l~~~~~----------~~~~l~~lwA~~~I~~L~~~~~~~~~~~~k~eIv~LS~~y~--ivS~yTSfV 625 (759)
..++ + .-.+++..... +-.+|.+..|+..+.........+.++.+.+.++++=..|. ++...|+=.
T Consensus 577 ~~~GeRRiRVvn~s~~~ss~~~evyasadq~aIa~~lak~a~~~~~~~s~~~~r~~i~~s~~~IL~~Ykk~~~~snt~tq 656 (861)
T COG5028 577 LNDGERRIRVVNLSLPTSSSIREVYASADQLAIACILAKKASTKALNSSLKEARVLINKSMVDILKAYKKELVKSNTSTQ 656 (861)
T ss_pred ccCCceEEEEEEeccccchhHHHHHHhccHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 2232 2 22223222211 11346666666666544433333445666777888777787 455555443
No 83
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=96.60 E-value=0.0068 Score=62.47 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=63.3
Q ss_pred EEEEEcCCCCCCC------CChHHHHHHHHHHHHhC---CCCCeEEEEEECCceEE-------------eeccccccCHH
Q 004349 329 VIFIVDISGSMQG------KPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYL-------------FSTSMELATKE 386 (759)
Q Consensus 329 vvfVlD~SGSM~g------~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~~-------------~~~~~~~~t~~ 386 (759)
++|+||+|.||.. ..++.+.+++..++.+. .+.|.++|+.||.+... +.+. ...+.+
T Consensus 2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l-~~~~~~ 80 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPL-DPPSAE 80 (224)
T ss_dssp EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEEC-C--BHH
T ss_pred EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecC-CccCHH
Confidence 7999999999973 24778888888777653 46799999999976432 1222 223555
Q ss_pred HHHHHHHHHhc------cccCCCCCchHHHHHHHHHHHhc--C--CCCCCEEEEEeCCCC
Q 004349 387 AVERAHQWIGI------NFIAGGSTNICAPLTKAVEMLTN--S--RGSIPIIFLVTDGAV 436 (759)
Q Consensus 387 ~i~~a~~~I~~------~~~~~GgT~i~~aL~~A~~~l~~--~--~~~~~~IiLlTDG~~ 436 (759)
.+....+.+.. ........++..+|..|..++.. . .-..+.|||+||+..
T Consensus 81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~ 140 (224)
T PF03731_consen 81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDG 140 (224)
T ss_dssp HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SS
T ss_pred HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCC
Confidence 55555443331 01123445889999999999875 2 123578999999874
No 84
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.58 E-value=0.075 Score=56.45 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCCCC--------CChHHHHHHHHHHHHh---CCCCCeEEEEEECCceE-Eeecccc-----cc-------
Q 004349 328 DVIFIVDISGSMQG--------KPLEDTKNALAVALSK---LDPGDSFNIVAFNGETY-LFSTSME-----LA------- 383 (759)
Q Consensus 328 dvvfVlD~SGSM~g--------~~i~~aK~al~~~L~~---L~~~d~f~Ii~F~~~~~-~~~~~~~-----~~------- 383 (759)
-+++|||++.--+| ..+..+-+++..|++. +....++.||+..+... .+.+... ..
T Consensus 4 lL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~~ 83 (279)
T TIGR00627 4 LLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKRL 83 (279)
T ss_pred EEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCccccccccccccccc
Confidence 36788888765442 2566666666666653 55678999998876532 2222210 00
Q ss_pred -C---------HHHHHHHH-HHHhccc---cCCCCCchHHHHHHHHHHHhcCC-------CCCCEEEEEeCCCCCChHHH
Q 004349 384 -T---------KEAVERAH-QWIGINF---IAGGSTNICAPLTKAVEMLTNSR-------GSIPIIFLVTDGAVEDERQI 442 (759)
Q Consensus 384 -t---------~~~i~~a~-~~I~~~~---~~~GgT~i~~aL~~A~~~l~~~~-------~~~~~IiLlTDG~~~~~~~i 442 (759)
+ .+.+.+.+ +.+.... ...+.|.+..||..|+-.+.+.. .-.+.|++++-+. ....+.
T Consensus 84 ~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~-~~~~qY 162 (279)
T TIGR00627 84 RELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITP-DMALQY 162 (279)
T ss_pred cchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCC-CchHHH
Confidence 0 01111111 2222111 11256778999999988875421 1134677676543 333333
Q ss_pred HHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCCchHHHHH
Q 004349 443 CDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQM 498 (759)
Q Consensus 443 ~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~~~l~~~l 498 (759)
...+ +.+-.+...++||.+++++...+..+|+.++..+||.|..+.+.+.+.+.+
T Consensus 163 i~~m-n~Ifaaqk~~I~Idv~~L~~e~~~~~lqQa~~~TgG~Y~~~~~~~~L~q~L 217 (279)
T TIGR00627 163 IPLM-NCIFSAQKQNIPIDVVSIGGDFTSGFLQQAADITGGSYLHVKKPQGLLQYL 217 (279)
T ss_pred HHHH-HHHHHHHHcCceEEEEEeCCccccHHHHHHHHHhCCEEeccCCHhHHHHHH
Confidence 3222 222222345699999999875568899999999999999988776654433
No 85
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=96.27 E-value=0.034 Score=57.94 Aligned_cols=171 Identities=15% Similarity=0.223 Sum_probs=99.9
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHH-----HHHHHHhC---CCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHh
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNA-----LAVALSKL---DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIG 396 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~a-----l~~~L~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~ 396 (759)
.-+.+++++|+|.+|....+.-.+.| +..|+-.+ .|-..++|+...+..-.+...+ ..+++. -+..+.
T Consensus 86 IiRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~~-~gnpq~---hi~~lk 161 (421)
T COG5151 86 IIRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSSM-DGNPQA---HIGQLK 161 (421)
T ss_pred hhheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhhc-CCCHHH---HHHHhh
Confidence 34789999999999987543322222 22222221 2445788888776643222221 234443 344444
Q ss_pred ccccCCCCCchHHHHHHHH-HHHhcCC-CCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHH
Q 004349 397 INFIAGGSTNICAPLTKAV-EMLTNSR-GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL 474 (759)
Q Consensus 397 ~~~~~~GgT~i~~aL~~A~-~~l~~~~-~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL 474 (759)
......|.-.+..||+.|- .++.... +.+.++|++..=..++...+.+.+...+. .++|++.+|+... -.+.
T Consensus 162 S~rd~~gnfSLqNaLEmar~~l~~~~~H~trEvLiifgS~st~DPgdi~~tid~Lv~----~~IrV~~igL~ae--vaic 235 (421)
T COG5151 162 SKRDCSGNFSLQNALEMARIELMKNTMHGTREVLIIFGSTSTRDPGDIAETIDKLVA----YNIRVHFIGLCAE--VAIC 235 (421)
T ss_pred cccccCCChhHHhHHHHhhhhhcccccccceEEEEEEeecccCCCccHHHHHHHHHh----hceEEEEEeehhH--HHHH
Confidence 3345778889999999984 4443322 22334444433333455555555554443 3589999998764 4678
Q ss_pred HHHHhhc----CCEEEEEcCCchHHHHHHHHHHhhhcce
Q 004349 475 RMLAMIS----RGYYGAAYDLDSIEIQMQKLFTRGFSSV 509 (759)
Q Consensus 475 ~~LA~~~----gG~~~~v~d~~~l~~~l~~~l~~~~~p~ 509 (759)
+.|..++ .|.|+.+-|...+ .+++.++..|.
T Consensus 236 KeickaTn~~~e~~y~v~vde~Hl----~el~~E~~~P~ 270 (421)
T COG5151 236 KEICKATNSSTEGRYYVPVDEGHL----SELMRELSHPT 270 (421)
T ss_pred HHHHhhcCcCcCceeEeeecHHHH----HHHHHhcCCCC
Confidence 8888887 7888877765555 44555566654
No 86
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.22 Score=49.86 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCCCC-----CChHHHHHHHHHHHHh-CC--CCCeEEEEEECC-ceEEeeccccccCHHHHHHHHHHHhcc
Q 004349 328 DVIFIVDISGSMQG-----KPLEDTKNALAVALSK-LD--PGDSFNIVAFNG-ETYLFSTSMELATKEAVERAHQWIGIN 398 (759)
Q Consensus 328 dvvfVlD~SGSM~g-----~~i~~aK~al~~~L~~-L~--~~d~f~Ii~F~~-~~~~~~~~~~~~t~~~i~~a~~~I~~~ 398 (759)
..+++||.|--|.. .+++.-|+++..+... +. |...++|++..+ ....+...+. +.. +.+..++ .
T Consensus 5 atmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~--d~g---kils~lh-~ 78 (259)
T KOG2884|consen 5 ATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTS--DRG---KILSKLH-G 78 (259)
T ss_pred eEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccc--cch---HHHHHhc-C
Confidence 47899999988864 4788899999888753 33 567899999988 5677665433 223 4455555 6
Q ss_pred ccCCCCCchHHHHHHHHHHHhcCCCC---CCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcC
Q 004349 399 FIAGGSTNICAPLTKAVEMLTNSRGS---IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (759)
Q Consensus 399 ~~~~GgT~i~~aL~~A~~~l~~~~~~---~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n 470 (759)
++..|+-++..+|+.|.-.|+.+.++ .|.|+|+-.-....+.+.....++..+ .++-|-.|.+|...+
T Consensus 79 i~~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk----~~Vaidii~FGE~~~ 149 (259)
T KOG2884|consen 79 IQPHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKK----NKVAIDIINFGEAEN 149 (259)
T ss_pred CCcCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHh----cCeeEEEEEeccccc
Confidence 78899999999999998888765443 244555422222344455544444333 246677788886543
No 87
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.84 E-value=0.024 Score=59.45 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCCCCch
Q 004349 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNI 407 (759)
Q Consensus 328 dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT~i 407 (759)
.++.++|+||||....++++..-+..+++ .++-+..++.-+..++..-..... .++...+..+|||++
T Consensus 263 ~i~vaVDtSGS~~d~ei~a~~~Ei~~Il~--~~~~eltli~~D~~v~~~~~~r~g----------~~~~~~~~ggG~Tdf 330 (396)
T COG3864 263 KIVVAVDTSGSMTDAEIDAAMTEIFDILK--NKNYELTLIECDNIVRRMYRVRKG----------RDMKKKLDGGGGTDF 330 (396)
T ss_pred heEEEEecCCCccHHHHHHHHHHHHHHHh--CCCcEEEEEEecchhhhhhccCCc----------ccCCcccCCCCCccc
Confidence 48899999999997666666655666662 257788888888776532211110 233333445677999
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCC
Q 004349 408 CAPLTKAVEMLTNSRGSIPIIFLVTDGAVE 437 (759)
Q Consensus 408 ~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~ 437 (759)
..+++..-+. ......|++|||.-.
T Consensus 331 ~Pvfeylek~-----~~~~~lIyfTDG~gd 355 (396)
T COG3864 331 SPVFEYLEKN-----RMECFLIYFTDGMGD 355 (396)
T ss_pred cHHHHHHHhh-----cccceEEEEccCCCC
Confidence 8876544322 122589999999853
No 88
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=95.80 E-value=0.51 Score=50.28 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCCCC-----CChHHHHHHHHHHHHh---CCCCCeEEEEEECCceE-Eeecccc------c----c---C-
Q 004349 328 DVIFIVDISGSMQG-----KPLEDTKNALAVALSK---LDPGDSFNIVAFNGETY-LFSTSME------L----A---T- 384 (759)
Q Consensus 328 dvvfVlD~SGSM~g-----~~i~~aK~al~~~L~~---L~~~d~f~Ii~F~~~~~-~~~~~~~------~----~---t- 384 (759)
=+++|||++-.-++ ..+.++-+++..|++. +....++.||+.+.... .+.|... . . +
T Consensus 3 LLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~~ 82 (276)
T PF03850_consen 3 LLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSDS 82 (276)
T ss_pred EEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCccccccccc
Confidence 37889999865554 2566677777777764 45677999999887753 2222211 0 0 0
Q ss_pred ---------HHHHHHHHHHHhccccC----CCCCchHHHHHHHHHHHhcC----C----CCCCEEEEEeCCCCCChHHHH
Q 004349 385 ---------KEAVERAHQWIGINFIA----GGSTNICAPLTKAVEMLTNS----R----GSIPIIFLVTDGAVEDERQIC 443 (759)
Q Consensus 385 ---------~~~i~~a~~~I~~~~~~----~GgT~i~~aL~~A~~~l~~~----~----~~~~~IiLlTDG~~~~~~~i~ 443 (759)
.+.+.+.++.+...... ...+.|..||..|+-.+.+. . .-.+.|+++.-+.+....+.+
T Consensus 83 ~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QYi 162 (276)
T PF03850_consen 83 NKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQYI 162 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHHH
Confidence 11111212211111111 11268888998888877543 1 112345552334444444444
Q ss_pred HHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCCchHHH
Q 004349 444 DAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEI 496 (759)
Q Consensus 444 ~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~~~l~~ 496 (759)
..+.- .=.+...++.|-++-+|. .+..+|+..+..+||.|..+.+.+.+-+
T Consensus 163 ~~MN~-iFaAqk~~v~IDv~~L~~-~~s~fLqQa~d~T~G~y~~~~~~~~l~q 213 (276)
T PF03850_consen 163 PLMNC-IFAAQKQKVPIDVCKLGG-KDSTFLQQASDITGGIYLKVSKPEGLLQ 213 (276)
T ss_pred HHHHH-HHHHhcCCceeEEEEecC-CchHHHHHHHHHhCceeeccCccccHHH
Confidence 43332 222334568899999998 4788999999999999999988766543
No 89
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=95.38 E-value=0.19 Score=59.36 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=71.8
Q ss_pred CceEEEEEcCCCCCCC--------CChHHHHHHHHHHHHhC---CCCCeEEEEEECCceE----------EeeccccccC
Q 004349 326 KKDVIFIVDISGSMQG--------KPLEDTKNALAVALSKL---DPGDSFNIVAFNGETY----------LFSTSMELAT 384 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g--------~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~----------~~~~~~~~~t 384 (759)
.--|+|+||+|-||.. .++..+.+++..++++. .++|.++|+.||.+.. .+.+.. ..+
T Consensus 10 keailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~-~p~ 88 (584)
T TIGR00578 10 RDSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELD-NPG 88 (584)
T ss_pred eeEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCC-CCC
Confidence 3559999999999984 35778888888888764 4789999999998642 133332 235
Q ss_pred HHHHHHHHHHHhc-c---c--cCCCC--CchHHHHHHHHHHHhcCC--CCCCEEEEEeCCC
Q 004349 385 KEAVERAHQWIGI-N---F--IAGGS--TNICAPLTKAVEMLTNSR--GSIPIIFLVTDGA 435 (759)
Q Consensus 385 ~~~i~~a~~~I~~-~---~--~~~Gg--T~i~~aL~~A~~~l~~~~--~~~~~IiLlTDG~ 435 (759)
.+.+.+..+.+.. . + ..+.+ ..+..+|-.+.+++.... -..+.|+++||-.
T Consensus 89 a~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D 149 (584)
T TIGR00578 89 AKRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNED 149 (584)
T ss_pred HHHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCC
Confidence 5554443332221 0 0 01111 367999999999997522 2357899999975
No 90
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.58 Score=45.87 Aligned_cols=139 Identities=19% Similarity=0.225 Sum_probs=93.0
Q ss_pred ceEEEEEcCCCCCC-C----CChHHHHHHHHHHHHhC---CCCCeEEEEEECCce-EEeeccccccCHHHHHHHHHHHhc
Q 004349 327 KDVIFIVDISGSMQ-G----KPLEDTKNALAVALSKL---DPGDSFNIVAFNGET-YLFSTSMELATKEAVERAHQWIGI 397 (759)
Q Consensus 327 ~dvvfVlD~SGSM~-g----~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~-~~~~~~~~~~t~~~i~~a~~~I~~ 397 (759)
...++|||.|--|. | .+++.-|+++..+++.- .+...++++.-.... ..++..+. ..-..+.+++
T Consensus 4 EatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T~-----~~gkilt~lh- 77 (243)
T COG5148 4 EATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPTK-----QRGKILTFLH- 77 (243)
T ss_pred ceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccchh-----hhhHHHHHhc-
Confidence 35789999986665 3 47899999999988653 245689998876653 33433222 2234555665
Q ss_pred cccCCCCCchHHHHHHHHHHHhcCCCC---CCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHH
Q 004349 398 NFIAGGSTNICAPLTKAVEMLTNSRGS---IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL 474 (759)
Q Consensus 398 ~~~~~GgT~i~~aL~~A~~~l~~~~~~---~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL 474 (759)
.+...|+.++..+|+.|.-.++.+.+. .+.+.|+..-...++++.++..+...++ ++-|-.|-+|...|...|
T Consensus 78 d~~~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkkn----nVAidii~fGE~~n~~~l 153 (243)
T COG5148 78 DIRLHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKN----NVAIDIIFFGEAANMAGL 153 (243)
T ss_pred cccccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhc----CeeEEEEehhhhhhhhHH
Confidence 677889999999999998888765443 3455555444445667777766665443 466778888877666544
Q ss_pred H
Q 004349 475 R 475 (759)
Q Consensus 475 ~ 475 (759)
.
T Consensus 154 ~ 154 (243)
T COG5148 154 F 154 (243)
T ss_pred H
Confidence 3
No 91
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.17 Score=54.85 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCCCCCCChHHHHHH---HHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCC
Q 004349 327 KDVIFIVDISGSMQGKPLEDTKNA---LAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~i~~aK~a---l~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~G 403 (759)
.-++-++|+||||....-+.||.+ |..+|..- -.++-|+...++...+- .+.. ++. ..+-.|
T Consensus 247 AVmfclMDvSGSM~~~~KdlAkrFF~lL~~FL~~k--YenveivfIrHht~A~E-----VdE~------dFF--~~~esG 311 (423)
T COG2718 247 AVMFCLMDVSGSMDQSEKDLAKRFFFLLYLFLRRK--YENVEIVFIRHHTEAKE-----VDET------DFF--YSQESG 311 (423)
T ss_pred eEEEEEEecCCCcchHHHHHHHHHHHHHHHHHhcc--cceeEEEEEeecCccee-----cchh------hce--eecCCC
Confidence 334457899999998777888885 33445432 34555555554433221 1222 122 135679
Q ss_pred CCchHHHHHHHHHHHhcC---CCCCCEEEEEeCCCCC--ChHHHHHHHHHHHHcCCCCCceEEEEE-ecCCcCHHHH--H
Q 004349 404 STNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVE--DERQICDAMKSRLTNGGSICPRIYTFG-IGSYCNHYFL--R 475 (759)
Q Consensus 404 gT~i~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~--~~~~i~~~v~~~~~~~~~~~~rI~t~G-iG~~~n~~lL--~ 475 (759)
||-+..||+.+.+++..+ .......+-.+||.-+ +.......+.+.+... ...|+.+ |-..-.+..| +
T Consensus 312 GTivSSAl~~m~evi~ErYp~aeWNIY~fqaSDGDN~~dDserc~~ll~~~im~~----~~~y~Y~Eitq~~~H~t~~y~ 387 (423)
T COG2718 312 GTIVSSALKLMLEVIKERYPPAEWNIYAFQASDGDNWADDSERCVELLAKKLMPV----VQYYGYIEITQRRTHQTLEYE 387 (423)
T ss_pred CeEeHHHHHHHHHHHHhhCChhheeeeeeeecCCccccCCCHHHHHHHHHHHHHh----hhheEEEeeeecccchhhhhh
Confidence 999999999999999763 1223477889999964 3344445554333211 1222221 1111122222 1
Q ss_pred HHHhhc-CCEEEEEcCCchHHHHHHHHHHhh
Q 004349 476 MLAMIS-RGYYGAAYDLDSIEIQMQKLFTRG 505 (759)
Q Consensus 476 ~LA~~~-gG~~~~v~d~~~l~~~l~~~l~~~ 505 (759)
.+-... +=....+.+.+++-..+.++|.+-
T Consensus 388 ~~~~~~dnFa~~~I~~~~Diypvfr~lf~ke 418 (423)
T COG2718 388 ALQGVFDNFAMQTIREPDDIYPVFRELFSKE 418 (423)
T ss_pred hhhccCcchheeeecCHHHHHHHHHHHHhcc
Confidence 111111 122455677788888888877653
No 92
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=0.23 Score=53.07 Aligned_cols=135 Identities=19% Similarity=0.175 Sum_probs=80.9
Q ss_pred CCCCCceEEEEEcCCCCCCCC---ChHHHHHH-HHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhc
Q 004349 322 RKVFKKDVIFIVDISGSMQGK---PLEDTKNA-LAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGI 397 (759)
Q Consensus 322 ~~~~~~dvvfVlD~SGSM~g~---~i~~aK~a-l~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~ 397 (759)
.++..+.+.+.+|+|+||... .+-.++++ ....+-++......-.++|.++-... |.+.... +.+.+.+++
T Consensus 423 a~ptgkr~~laldvs~sm~~rv~~s~ln~reaaa~m~linlhnead~~~vaf~d~lte~-pftkd~k---igqv~~~~n- 497 (598)
T KOG4465|consen 423 AEPTGKRFCLALDVSASMNQRVLGSILNAREAAAAMCLINLHNEADSRCVAFCDELTEC-PFTKDMK---IGQVLDAMN- 497 (598)
T ss_pred CCCCCceEEEEEecchhhhhhhhccccchHHHHhhhheeeeccccceeEEEeccccccC-CCccccc---HHHHHHHHh-
Confidence 456789999999999999853 22233333 22334455555567789999875432 2333233 444455554
Q ss_pred cccCCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCC-hHHHHHHHHHHHHcCCCCCceEEEEEec
Q 004349 398 NFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVED-ERQICDAMKSRLTNGGSICPRIYTFGIG 466 (759)
Q Consensus 398 ~~~~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~-~~~i~~~v~~~~~~~~~~~~rI~t~GiG 466 (759)
+ -..|||+-+-++-+|-+. .-...+.|++||...+. +-.-...++++....+-....+...++-
T Consensus 498 n-i~~g~tdcglpm~wa~en----nlk~dvfii~tdndt~ageihp~~aik~yrea~~i~dakliv~amq 562 (598)
T KOG4465|consen 498 N-IDAGGTDCGLPMIWAQEN----NLKADVFIIFTDNDTFAGEIHPAEAIKEYREAMDIHDAKLIVCAMQ 562 (598)
T ss_pred c-CCCCCCccCCceeehhhc----CCCccEEEEEecCcccccccCHHHHHHHHHHhcCCCcceEEEEEee
Confidence 2 356999998888888552 22345788999987642 3334455666655443333556555553
No 93
>PF14415 DUF4424: Domain of unknown function (DUF4424)
Probab=93.83 E-value=0.57 Score=49.19 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=41.3
Q ss_pred EEEEEEEEEEccCCCCceeEEEEEeecCC--------Cc----------eEEEEEEEECCEEEEEEEEeec
Q 004349 103 FVRVSGTWRVHCVMGSKSCDCRIAVPMGD--------QG----------SILGVEAEISGKSYHTQLIALG 155 (759)
Q Consensus 103 ~vtv~q~f~N~~~~~~~~~E~~y~FPLpe--------~a----------~V~~f~~~i~gk~i~g~V~eke 155 (759)
+|+|.-+|+| .++++++....||||+ .+ .|.+|.++||||.+..++.-|.
T Consensus 2 ~I~V~Y~F~N---~t~~dv~~~VaFPlP~i~~~~~~d~~~~~p~~~~~n~i~~Fk~~VdGk~v~~q~~~ra 69 (253)
T PF14415_consen 2 RIRVRYVFRN---PTDQDVTVTVAFPLPDISGSPENDFAIAIPDNDSDNFIKDFKTTVDGKPVKPQVHQRA 69 (253)
T ss_pred EEEEEEEEeC---CCCCcEEEEEEEeCCCCCCCccccccccccccCCcCccceEEEEECCEEcCceeEEEE
Confidence 5788999999 4799999999999993 12 5667999999999999985444
No 94
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=93.73 E-value=0.49 Score=48.57 Aligned_cols=112 Identities=15% Similarity=0.275 Sum_probs=68.9
Q ss_pred CCCCceEEEEEcCCCCCCCCChHHHHH-HHHHHHHhCC-------------CCCeEEEEEECCceEEeeccc-cccCHHH
Q 004349 323 KVFKKDVIFIVDISGSMQGKPLEDTKN-ALAVALSKLD-------------PGDSFNIVAFNGETYLFSTSM-ELATKEA 387 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~~i~~aK~-al~~~L~~L~-------------~~d~f~Ii~F~~~~~~~~~~~-~~~t~~~ 387 (759)
....++||||||.+..|.. -|...|. -+.-+++.+. ....+++|.|++....-.... ....-.+
T Consensus 10 ~~~~~~vVfvvEgTAalgp-y~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~ 88 (226)
T PF11265_consen 10 QPPQAQVVFVVEGTAALGP-YWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSS 88 (226)
T ss_pred cCccceEEEEEecchhhhh-hHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCC
Confidence 3567899999999999964 6666665 3555555543 224689999998742110000 0111234
Q ss_pred HHHHHHHHhcccc-CCCCC----chHHHHHHHHHHHhcCC---------CCCCEEEEEeCCCC
Q 004349 388 VERAHQWIGINFI-AGGST----NICAPLTKAVEMLTNSR---------GSIPIIFLVTDGAV 436 (759)
Q Consensus 388 i~~a~~~I~~~~~-~~GgT----~i~~aL~~A~~~l~~~~---------~~~~~IiLlTDG~~ 436 (759)
....++|++ .+. .+||. .+.++|..|+.++.... ...++.||++--.+
T Consensus 89 ~~~fl~~L~-~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP 150 (226)
T PF11265_consen 89 PQKFLQWLD-AIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPP 150 (226)
T ss_pred HHHHHHHHH-ccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCC
Confidence 456677776 343 33433 57889999999886311 12478899887654
No 95
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=93.37 E-value=0.58 Score=53.07 Aligned_cols=105 Identities=21% Similarity=0.293 Sum_probs=68.5
Q ss_pred CCceEEEEEcCCCCCCC-----CChHHHHHHHHHH-HHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhcc
Q 004349 325 FKKDVIFIVDISGSMQG-----KPLEDTKNALAVA-LSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN 398 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g-----~~i~~aK~al~~~-L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~ 398 (759)
...++++++|.|.||.. .+++.+..++..+ ...+..+|++++..|+.....+.+.. ...+.+...++.+. .
T Consensus 223 r~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~gd~vg~~~~~~~~~~~~~p~--~G~~~l~~~l~~l~-~ 299 (416)
T COG1721 223 RGRTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKNGDRVGLLIFGGGGPKWIPPS--RGRRHLARILKALA-L 299 (416)
T ss_pred cCceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCeeEEEEECCCcceeeCCC--cchHHHHHHHHHhh-c
Confidence 37899999999999984 5788877765544 45577899999999998765444332 36677777777775 3
Q ss_pred ccCCCC-CchHHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Q 004349 399 FIAGGS-TNICAPLTKAVEMLTNSRGSIPIIFLVTDGAV 436 (759)
Q Consensus 399 ~~~~Gg-T~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~ 436 (759)
....+. |+...+... ...+ ....+.++++||=..
T Consensus 300 ~~~~~~~~~~~~~~~~-~~~l---~~~~~~~~~~~~l~~ 334 (416)
T COG1721 300 LRPAPEETDYIRRVSK-LDFL---PPRRPLVILITDLAR 334 (416)
T ss_pred cCCCCcchhHHHHhhh-hhcc---CcccceEEEeehhhc
Confidence 444433 444444322 2222 233457788887654
No 96
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=93.30 E-value=0.23 Score=56.20 Aligned_cols=189 Identities=15% Similarity=0.199 Sum_probs=96.8
Q ss_pred eEEEEecCCCcccCCCCCceEEEEEcCCCCCCCCChHHHHH---HHHHHHHhCCCCCeEEEEEECCceE-Eeec------
Q 004349 309 MFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKN---ALAVALSKLDPGDSFNIVAFNGETY-LFST------ 378 (759)
Q Consensus 309 ~f~l~~~P~~~~~~~~~~~dvvfVlD~SGSM~g~~i~~aK~---al~~~L~~L~~~d~f~Ii~F~~~~~-~~~~------ 378 (759)
.|.+.+.|.. ..|.|+.+|+|.|+||.. .++..|. .|..-|+++..+-|+++=+|-+... .|..
T Consensus 90 ~f~v~~~~a~-----~yPvDLYyLmDlS~Sm~d-dl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l 163 (426)
T PF00362_consen 90 TFNVTVRPAE-----DYPVDLYYLMDLSYSMKD-DLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKL 163 (426)
T ss_dssp EEEEEEEBSS-----S--EEEEEEEE-SGGGHH-HHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCH
T ss_pred EEEEEEeecc-----ccceeEEEEeechhhhhh-hHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhh
Confidence 4666666543 479999999999999985 4555554 4666677787788999999977632 1110
Q ss_pred ---c-------ccccC-------HHHHHHHHHHHhccccCCCCCc----hHHHHHHHH---HHHhcCCCCCCEEEEEeCC
Q 004349 379 ---S-------MELAT-------KEAVERAHQWIGINFIAGGSTN----ICAPLTKAV---EMLTNSRGSIPIIFLVTDG 434 (759)
Q Consensus 379 ---~-------~~~~t-------~~~i~~a~~~I~~~~~~~GgT~----i~~aL~~A~---~~l~~~~~~~~~IiLlTDG 434 (759)
. ..++. .++..+..+.++ .....|.-+ -.+||-.|. +.+.-+...++.|||.||+
T Consensus 164 ~~pc~~~~~~c~~~~~f~~~l~Lt~~~~~F~~~v~-~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~ 242 (426)
T PF00362_consen 164 KNPCPSKNPNCQPPFSFRHVLSLTDDITEFNEEVN-KQKISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDA 242 (426)
T ss_dssp HSTSCCTTS--B---SEEEEEEEES-HHHHHHHHH-TS--B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS
T ss_pred cCcccccCCCCCCCeeeEEeecccchHHHHHHhhh-hccccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCC
Confidence 0 00000 013334444443 222222211 123444432 2333345567899999997
Q ss_pred CCC----------------------C---------hHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCC
Q 004349 435 AVE----------------------D---------ERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRG 483 (759)
Q Consensus 435 ~~~----------------------~---------~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG 483 (759)
... + +-.....+.+.+.+.. -..||+|.-. .....+.|+..=.|
T Consensus 243 ~fH~agDg~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~--i~~IFAVt~~---~~~~Y~~L~~~i~~ 317 (426)
T PF00362_consen 243 GFHFAGDGKLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENN--INPIFAVTKD---VYSIYEELSNLIPG 317 (426)
T ss_dssp -B--TTGGGGGT--S---SS--BSTTSBBGGGGCS----HHHHHHHHHHTT--EEEEEEEEGG---GHHHHHHHHHHSTT
T ss_pred ccccccccccceeeecCCCceEECCCCcccccccccCCCHHHHHHHHHHcC--CEEEEEEchh---hhhHHHHHhhcCCC
Confidence 531 0 0112344555554432 2457776322 23456777776666
Q ss_pred EEEE-E-cCCchHHHHHHHHHHhhhcce
Q 004349 484 YYGA-A-YDLDSIEIQMQKLFTRGFSSV 509 (759)
Q Consensus 484 ~~~~-v-~d~~~l~~~l~~~l~~~~~p~ 509 (759)
...- + .|.+.+.+.+.+.+.++.+.+
T Consensus 318 s~vg~L~~dSsNIv~LI~~aY~~i~s~V 345 (426)
T PF00362_consen 318 SSVGELSSDSSNIVQLIKEAYNKISSKV 345 (426)
T ss_dssp EEEEEESTTSHTHHHHHHHHHHHHCTEE
T ss_pred ceecccccCchhHHHHHHHHHHHHhheE
Confidence 6543 3 334567777888888876544
No 97
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=93.19 E-value=8.2 Score=39.11 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHh---CCCCCeEEEEE-ECCceEEeeccccc---------------------cCHHHHHHHHHHHhcc
Q 004349 344 LEDTKNALAVALSK---LDPGDSFNIVA-FNGETYLFSTSMEL---------------------ATKEAVERAHQWIGIN 398 (759)
Q Consensus 344 i~~aK~al~~~L~~---L~~~d~f~Ii~-F~~~~~~~~~~~~~---------------------~t~~~i~~a~~~I~~~ 398 (759)
....-+.+..+|+. ...+.|+.+++ ++...+.+.|...+ .++..+.+..+.+...
T Consensus 43 ~~kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~yrrfr~vde~~i~eiyrl~e~~ 122 (296)
T COG5242 43 RDKVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMYRRFRNVDETDITEIYRLIEHP 122 (296)
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhhhhhcccchHHHHHHHHHHhCc
Confidence 45555666666643 34567888776 45555544433221 1122233333333211
Q ss_pred ccCCCCCchHHHHHHHHHHHhcCCCC---CCEEEEEeC-CCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHH
Q 004349 399 FIAGGSTNICAPLTKAVEMLTNSRGS---IPIIFLVTD-GAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL 474 (759)
Q Consensus 399 ~~~~GgT~i~~aL~~A~~~l~~~~~~---~~~IiLlTD-G~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL 474 (759)
-...--+++..|+..++......... ...|+++|= |... ..+.+..+.- +=.+...+++|..+.|+.. ..+|
T Consensus 123 ~k~sqr~~v~gams~glay~n~~~~e~slkSriliftlsG~d~-~~qYip~mnC-iF~Aqk~~ipI~v~~i~g~--s~fl 198 (296)
T COG5242 123 HKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGRDR-KDQYIPYMNC-IFAAQKFGIPISVFSIFGN--SKFL 198 (296)
T ss_pred ccccceeehhhhhhhhHHHHhhhcccccccceEEEEEecCchh-hhhhchhhhh-eeehhhcCCceEEEEecCc--cHHH
Confidence 12234578888888888877654322 234555554 6321 1111222211 1123345688999998874 6789
Q ss_pred HHHHhhcCCEEEEEcCCchHH
Q 004349 475 RMLAMISRGYYGAAYDLDSIE 495 (759)
Q Consensus 475 ~~LA~~~gG~~~~v~d~~~l~ 495 (759)
+.-+.++||.|..+.+.+.+-
T Consensus 199 ~Q~~daTgG~Yl~ve~~eGll 219 (296)
T COG5242 199 LQCCDATGGDYLTVEDTEGLL 219 (296)
T ss_pred HHHhhccCCeeEeecCchhHH
Confidence 999999999999999887653
No 98
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=13 Score=43.78 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=42.9
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEE
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYL 375 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~ 375 (759)
.|.-++||+|+- |..+.++.+|++|...|+.|+++..+++|+|+..++.
T Consensus 120 ~ppvf~fVvDtc--~~eeeL~~LkssL~~~l~lLP~~alvGlItfg~~v~v 168 (745)
T KOG1986|consen 120 SPPVFVFVVDTC--MDEEELQALKSSLKQSLSLLPENALVGLITFGTMVQV 168 (745)
T ss_pred CCceEEEEEeec--cChHHHHHHHHHHHHHHhhCCCcceEEEEEecceEEE
Confidence 466789999974 6667899999999999999999999999999998754
No 99
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=80.64 E-value=32 Score=36.13 Aligned_cols=166 Identities=15% Similarity=0.133 Sum_probs=88.6
Q ss_pred CCceEEEEEcCCC---CCCC-----CChHHHHHHHHHHHHh-C--CCCCeEEEEEECCceE-Eeecccccc---------
Q 004349 325 FKKDVIFIVDISG---SMQG-----KPLEDTKNALAVALSK-L--DPGDSFNIVAFNGETY-LFSTSMELA--------- 383 (759)
Q Consensus 325 ~~~dvvfVlD~SG---SM~g-----~~i~~aK~al~~~L~~-L--~~~d~f~Ii~F~~~~~-~~~~~~~~~--------- 383 (759)
.+.-++++||.+. -|.. ..+...-+++..|++. | ..+.++.|++..++.. .+.+.....
T Consensus 22 ~~slL~vlId~~p~~Wg~~as~~~~~ti~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 22 NPSLLVVLIDANPCSWGMLASAENWETISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred CceeEEEEEecCcchhhhhhhhcCceeHHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 3556888999887 2221 2556666777777653 3 4577999999866642 111100000
Q ss_pred -------C-------HHH-HHHHHHHHhccc-cCC-CCCchHHHHHHHHHHHhcCC------CCCCEEEEEeCCCCCChH
Q 004349 384 -------T-------KEA-VERAHQWIGINF-IAG-GSTNICAPLTKAVEMLTNSR------GSIPIIFLVTDGAVEDER 440 (759)
Q Consensus 384 -------t-------~~~-i~~a~~~I~~~~-~~~-GgT~i~~aL~~A~~~l~~~~------~~~~~IiLlTDG~~~~~~ 440 (759)
+ .+. +++....+.... ... .-|-+..|+..++....... .-...|+++|=+.....+
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~yi~~~~ke~~~~~lkSRilV~t~t~d~~~q 181 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGYINRLHKEEASEKLKSRILVFTLTRDRALQ 181 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccchHhhhhhhhhhhhhhceEEEEEechHHHhh
Confidence 0 011 111111111000 111 14455556655554433211 113467777766532211
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCCchH
Q 004349 441 QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSI 494 (759)
Q Consensus 441 ~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~~~l 494 (759)
...++.--. .+...+++|..+.+|.+ ..+|+.-+..+||.|..+...+.+
T Consensus 182 -yi~~MNciF-aAqKq~I~Idv~~l~~~--s~~LqQa~D~TGG~YL~v~~~~gL 231 (314)
T KOG2487|consen 182 -YIPYMNCIF-AAQKQNIPIDVVSLGGD--SGFLQQACDITGGDYLHVEKPDGL 231 (314)
T ss_pred -hhhHHHHHH-HHHhcCceeEEEEecCC--chHHHHHHhhcCCeeEecCCcchH
Confidence 111111111 12234688999999986 789999999999999999877655
No 100
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=75.38 E-value=31 Score=39.34 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=57.5
Q ss_pred EEEEEeceEEEEEEEEEEEccCCCCceeEEEEEeecCCC--ceEEEEEEEECCEEEEEEE-Eeecccccccccccccccc
Q 004349 94 DVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQ--GSILGVEAEISGKSYHTQL-IALGENDGAGKSASVETGS 170 (759)
Q Consensus 94 ~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLpe~--a~V~~f~~~i~gk~i~g~V-~eke~A~~~~~~~~~~~aa 170 (759)
.|+-....+++++..+..| .++.+ ...|.|.||.+ ..+..+++..+++...... +++.+ +..+.
T Consensus 10 ~idl~~~~vk~~~~i~i~N---~g~~p-~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~------~~~~~--- 76 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKN---IGDEP-VSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITE------VNSGS--- 76 (432)
T ss_pred EEEccCcEEEEEEEEEEEE---CCCCC-ceEEEEEECchhhccEEEEEEEECCCcccccccccccc------ccCCC---
Confidence 3444445789999999999 45666 45677777775 4777788887765544433 11111 11110
Q ss_pred ceeCCeEEEEcc-ccCCCCEEEEEEEEEE
Q 004349 171 FLKPNIFTLTLP-QIDGGSYLSIRLRWSQ 198 (759)
Q Consensus 171 ll~~n~F~~~Vg-nIppg~~v~V~l~Y~q 198 (759)
.-+.|++.+. +|.||++++|+++|+-
T Consensus 77 --~~~~~~i~L~~pl~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 77 --EIKYYEITLPKPLAPGEKVTLTVEYVL 103 (432)
T ss_pred --CcceEEEECCCCCCCCCEEEEEEEEEe
Confidence 0123788887 4889999999999984
No 101
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=74.77 E-value=50 Score=43.54 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=76.6
Q ss_pred ceEEEEEcCCCCCCCCC-hHHHHHHHHH---HHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCC
Q 004349 327 KDVIFIVDISGSMQGKP-LEDTKNALAV---ALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~-i~~aK~al~~---~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~ 402 (759)
-.|++-||-|.||+... ...|-+.+.. .|..|. -..++|+-|+.....+.++-++.+.+.-.++.+|.. --.
T Consensus 4393 yqvmisiddsksmses~~~~la~etl~lvtkals~le-~g~iav~kfge~~~~lh~fdkqfs~esg~~~f~~f~---feq 4468 (4600)
T COG5271 4393 YQVMISIDDSKSMSESGSTVLALETLALVTKALSLLE-VGQIAVMKFGEQPELLHPFDKQFSSESGVQMFSHFT---FEQ 4468 (4600)
T ss_pred eEEEEEecccccccccCceeeehHHHHHHHHHHHHHh-hccEEEEecCCChhhhCchhhhhcchHHHHHHHhhc---hhc
Confidence 35889999999998532 1223333332 344443 448999999999887777666666666666666653 224
Q ss_pred CCCchHHHHHHHHHHHhcC----CCC-CCEEEEEeCCCCCChHHHHHHHHHHH
Q 004349 403 GSTNICAPLTKAVEMLTNS----RGS-IPIIFLVTDGAVEDERQICDAMKSRL 450 (759)
Q Consensus 403 GgT~i~~aL~~A~~~l~~~----~~~-~~~IiLlTDG~~~~~~~i~~~v~~~~ 450 (759)
..||...-....++.+... +.. ...=|+++||.-.+.+.+...++++.
T Consensus 4469 s~tnv~~l~~~s~k~f~~a~t~~h~d~~qleiiisdgicedhdsi~kllrra~ 4521 (4600)
T COG5271 4469 SNTNVLALADASMKCFNYANTASHHDIRQLEIIISDGICEDHDSIRKLLRRAQ 4521 (4600)
T ss_pred ccccHHHHHHHHHHHHHHhhhhcccchheeEEEeecCcccchHHHHHHHHHhh
Confidence 5678765555555554322 112 23458899999888887777776653
No 102
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=72.46 E-value=8.9 Score=45.60 Aligned_cols=60 Identities=25% Similarity=0.373 Sum_probs=42.0
Q ss_pred ceEEEEecCCCcccCCCCCceEEEEEcCCCCCCCCChHHHHH---HHHHHHHhCCCCCeEEEEEECCce
Q 004349 308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKN---ALAVALSKLDPGDSFNIVAFNGET 373 (759)
Q Consensus 308 ~~f~l~~~P~~~~~~~~~~~dvvfVlD~SGSM~g~~i~~aK~---al~~~L~~L~~~d~f~Ii~F~~~~ 373 (759)
..|.+.+.+.. -.|.|+..++|.|-||.. .++..|+ .|..-|+.|..+-|++.=+|=+..
T Consensus 119 ~~f~l~~r~a~-----~yPVDLYyLMDlS~SM~D-Dl~~l~~LG~~L~~~m~~lT~nfrlGFGSFVDK~ 181 (783)
T KOG1226|consen 119 QTFQLKVRQAE-----DYPVDLYYLMDLSYSMKD-DLENLKSLGTDLAREMRKLTSNFRLGFGSFVDKT 181 (783)
T ss_pred eeEEEEEeecc-----CCCeeEEEEeecchhhhh-hHHHHHHHHHHHHHHHHHHhccCCccccchhccc
Confidence 45666655543 468999999999999986 4555555 466667777777787766665553
No 103
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=71.93 E-value=1.4 Score=33.39 Aligned_cols=7 Identities=71% Similarity=2.527 Sum_probs=3.2
Q ss_pred ccccccc
Q 004349 711 KCCCLCC 717 (759)
Q Consensus 711 ~~~~~~~ 717 (759)
||||-||
T Consensus 28 cccc~cc 34 (56)
T TIGR03602 28 CCCCCCC 34 (56)
T ss_pred EEeccEE
Confidence 4444444
No 104
>KOG2326 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) [Replication, recombination and repair]
Probab=57.94 E-value=1.9e+02 Score=34.02 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=71.6
Q ss_pred ceEEEEEcCCCCCCCC------ChHHHHHHHHHHHHh--C--CCCCeEEEEEECCceEE--------------eeccccc
Q 004349 327 KDVIFIVDISGSMQGK------PLEDTKNALAVALSK--L--DPGDSFNIVAFNGETYL--------------FSTSMEL 382 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~------~i~~aK~al~~~L~~--L--~~~d~f~Ii~F~~~~~~--------------~~~~~~~ 382 (759)
.-.+|++|.+.||.-. .+++++.++...+.+ + +..|.|+++.|+-+... +.+.+.+
T Consensus 5 e~ttfilDvG~~Ms~~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ten~legg~~fqnisvl~p~~tp 84 (669)
T KOG2326|consen 5 ESTTFILDVGPSMSKNNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDVTENSLEGGNVFQNISVLAPVTTP 84 (669)
T ss_pred cceEEEEecCccccccCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCccCccccccccceeEEeecccch
Confidence 4467888999999742 689999988877754 2 24679999999976532 1122222
Q ss_pred cCHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCC
Q 004349 383 ATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSIC 457 (759)
Q Consensus 383 ~t~~~i~~a~~~I~~~~~~~GgT~i~~aL~~A~~~l~~~-----~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~ 457 (759)
+...-+.....++. +..--.++..+|-..+.++.+. +-..+.|+..+++.....+.+. +.+.+.. ..
T Consensus 85 af~~l~k~~~~~~q---qns~q~Df~gal~vs~dL~~qhe~~~k~~~kr~Il~~~~l~~dfsd~~~--ive~l~~---~d 156 (669)
T KOG2326|consen 85 AFIGLIKRLKQYCQ---QNSHQSDFEGALSVSQDLLVQHEDIKKQFQKRKILKQIVLFTDFSDDLF--IVEDLTD---ED 156 (669)
T ss_pred hhHHHHHHHHHhcC---CCccccchhhhHHHHHHHHHHHHhccchhhceEEEEeecccccchhhHH--HHHHHhh---cC
Confidence 22221111111222 1222334666776666655332 1224566666666654444433 2233322 23
Q ss_pred ceEEEEEec
Q 004349 458 PRIYTFGIG 466 (759)
Q Consensus 458 ~rI~t~GiG 466 (759)
+-+-++|+.
T Consensus 157 idL~~~gld 165 (669)
T KOG2326|consen 157 IDLLTEGLD 165 (669)
T ss_pred cceeEeecc
Confidence 556677764
No 105
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=52.99 E-value=80 Score=32.60 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCC-CChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCH--------HHHHHHH
Q 004349 408 CAPLTKAVEMLTNSRGSIPIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNH--------YFLRMLA 478 (759)
Q Consensus 408 ~~aL~~A~~~l~~~~~~~~~IiLlTDG~~-~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~--------~lL~~LA 478 (759)
.++|..+++..++..+..=.+=|+|||.+ +...++...++ .+...+-..+.||.|.=|.++.+ .+.+.++
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~-~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~ 91 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIK-LAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLA 91 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHH-HHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHH-HHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHH
Confidence 46778888877665444457789999998 45555555444 33444444577899988877543 2345556
Q ss_pred hhcCCEE
Q 004349 479 MISRGYY 485 (759)
Q Consensus 479 ~~~gG~~ 485 (759)
+.+.|..
T Consensus 92 ~~~~g~I 98 (223)
T PF06415_consen 92 EIGIGRI 98 (223)
T ss_dssp HHTCTEE
T ss_pred hhCCceE
Confidence 6666554
No 106
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=49.46 E-value=5.5 Score=46.15 Aligned_cols=12 Identities=50% Similarity=1.500 Sum_probs=0.0
Q ss_pred hhhccccccccc
Q 004349 743 GCFECCSNLCCC 754 (759)
Q Consensus 743 ~~~~~~~~~~~~ 754 (759)
||+.|||-.||+
T Consensus 579 ~C~~~~c~~c~~ 590 (610)
T PF01601_consen 579 GCFGSCCGKCCD 590 (610)
T ss_dssp ------------
T ss_pred chhhchhccccc
Confidence 555566666665
No 107
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=41.90 E-value=60 Score=37.69 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=44.1
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEE
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYL 375 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~ 375 (759)
..|.-+.||+|.-. .++.+...|+++..-|..|+++.-+++|+|++..++
T Consensus 120 ~~ppvf~fvvD~~~--D~e~l~~LkdslivslsllppeaLvglItygt~i~v 169 (755)
T COG5047 120 ILPPVFFFVVDACC--DEEELTALKDSLIVSLSLLPPEALVGLITYGTSIQV 169 (755)
T ss_pred cCCceEEEEEEeec--CHHHHHHHHHHHHHHHhcCCccceeeEEEecceeEE
Confidence 46788999999875 677899999999999999999999999999988654
No 108
>KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones]
Probab=41.47 E-value=1.6e+02 Score=34.02 Aligned_cols=100 Identities=16% Similarity=0.091 Sum_probs=62.0
Q ss_pred ceeceEEEEEEEEeceEEEEEEEEEEEccCCCCceeEEEEEeecCCCceEEEEEE-EECCEEEEEEEEeecccccccccc
Q 004349 86 LQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEA-EISGKSYHTQLIALGENDGAGKSA 164 (759)
Q Consensus 86 L~~~~v~v~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLpe~a~V~~f~~-~i~gk~i~g~V~eke~A~~~~~~~ 164 (759)
+....++=.|+-...++.|+.+.++.|- .+...-|-.|.||=+.++.+.-+.+ ..+|+.- +.+. ... .+..
T Consensus 31 w~n~nv~RTIDlsS~ivK~tt~l~i~N~--g~ePatey~~a~~~~~~~~la~ls~~~~~g~~~-~~l~-~s~----~~~~ 102 (602)
T KOG2291|consen 31 WVNVNVERTIDLSSQIVKVTTELSIENI--GSEPATEYLLAFEKELGASLAFLSVAFTEGKKK-TLLK-LSV----NPPK 102 (602)
T ss_pred cccccceEEEehhhhhhhheeEEEEEec--CCCchheEEEeccCccccceeEEEEeeccCccc-cccc-ccc----CCcc
Confidence 3333344445544468899999999992 3444468999999999999999944 4555432 1111 000 0011
Q ss_pred ccccccceeCCeEEEEccc-cCCCCEEEEEEEEE
Q 004349 165 SVETGSFLKPNIFTLTLPQ-IDGGSYLSIRLRWS 197 (759)
Q Consensus 165 ~~~~aall~~n~F~~~Vgn-Ippg~~v~V~l~Y~ 197 (759)
++. ....+|++.+.+ |.||+++++.|.+.
T Consensus 103 ~~~----~~~~~y~v~lp~pl~pge~vTl~V~~~ 132 (602)
T KOG2291|consen 103 KDG----ASERVYTVTLPNPLSPGEKVTLIVEAV 132 (602)
T ss_pred cCC----CccceEEEeCCCCCCCCceEEEEEEee
Confidence 110 111588888876 88999999988765
No 109
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=39.35 E-value=9.9 Score=44.18 Aligned_cols=7 Identities=29% Similarity=1.194 Sum_probs=0.0
Q ss_pred hcccccc
Q 004349 700 AASNCCS 706 (759)
Q Consensus 700 ~~~~~~~ 706 (759)
-++||||
T Consensus 570 ~~TGCCG 576 (610)
T PF01601_consen 570 CMTGCCG 576 (610)
T ss_dssp -------
T ss_pred HhcCCcc
Confidence 3445554
No 110
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=32.36 E-value=54 Score=27.85 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=28.5
Q ss_pred CCceEEEEEcCCCCCCC-----CChHHHHHHHHHHHHhC-CCCCeEE
Q 004349 325 FKKDVIFIVDISGSMQG-----KPLEDTKNALAVALSKL-DPGDSFN 365 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g-----~~i~~aK~al~~~L~~L-~~~d~f~ 365 (759)
...++++++|.+.+|.. ..++.+...+..++..+ ..++.|+
T Consensus 39 ~~~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~g~~v~ 85 (86)
T PF01882_consen 39 RSQPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQGDPVG 85 (86)
T ss_pred cCCcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 45789999999999975 56677777666665543 3455543
No 111
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=31.90 E-value=3.9e+02 Score=24.39 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=56.6
Q ss_pred eEEEEEEEEEEEccCCCCceeEEEEEeecCCCceEEEEEE--EECCEEEEEEEEeeccccccccccccccccceeCCeEE
Q 004349 101 TAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEA--EISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFT 178 (759)
Q Consensus 101 ~A~vtv~q~f~N~~~~~~~~~E~~y~FPLpe~a~V~~f~~--~i~gk~i~g~V~eke~A~~~~~~~~~~~aall~~n~F~ 178 (759)
.+.+++++... .|-..+.|.|-.=.|=+.++--+..-++ .++|.+-.-+|+++..-. -.=...--+-+..+.|+
T Consensus 15 ~~~~~ieme~n-~nY~~sDPF~N~rLFcVs~Die~L~aEv~f~mDGe~~iVEiKd~~~de---vLWsn~~~~~V~~dt~t 90 (132)
T PF15417_consen 15 TAKTTIEMEMN-ANYSDSDPFENGRLFCVSEDIEALDAEVYFQMDGESGIVEIKDRKTDE---VLWSNTWNGKVSGDTFT 90 (132)
T ss_pred cccEEEEEEec-cCcCcCCccccceEEEEecchheeeeEEEEEEcCccceEEeccCCccc---eeeccccccccccceEE
Confidence 35566666642 2335677777666677777666655554 458888888887765421 11111122345688999
Q ss_pred EEccccCCCCEEEEEEE
Q 004349 179 LTLPQIDGGSYLSIRLR 195 (759)
Q Consensus 179 ~~VgnIppg~~v~V~l~ 195 (759)
+++-||..+.+-.|.++
T Consensus 91 isL~nlqk~kEY~V~ft 107 (132)
T PF15417_consen 91 ISLNNLQKEKEYVVCFT 107 (132)
T ss_pred EEhhhcccCceEEEEEe
Confidence 99999998887666554
No 112
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=29.78 E-value=60 Score=28.98 Aligned_cols=38 Identities=16% Similarity=0.495 Sum_probs=30.8
Q ss_pred ceeCCeEEEEccccCCCCEEEEEEEEEEEeeecCCeEEEEEeecc
Q 004349 171 FLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKF 215 (759)
Q Consensus 171 ll~~n~F~~~VgnIppg~~v~V~l~Y~q~L~~~~g~~~l~lp~~~ 215 (759)
+++|.+|.+++-+|.-++.+.|.| +++|+|.+.+|..+
T Consensus 66 I~~pG~YeiNl~~Lld~~~iVval-------~EeG~Y~I~LP~~~ 103 (112)
T COG3364 66 ILRPGVYEINLESLLDRDEIVVAL-------QEEGRYFIHLPSLL 103 (112)
T ss_pred EecCceEEEehhhhccCCceEEEE-------ccCCeEEEEChhHh
Confidence 458999999999999999877754 35799987777654
No 113
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.88 E-value=1.3e+02 Score=28.74 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC
Q 004349 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKL 358 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L 358 (759)
..-++||+|.+.| .+++.||+-+..+++.-
T Consensus 85 tqglIFV~Dsa~~---dr~eeAr~ELh~ii~~~ 114 (180)
T KOG0071|consen 85 TQGLIFVVDSADR---DRIEEARNELHRIINDR 114 (180)
T ss_pred CceEEEEEeccch---hhHHHHHHHHHHHhCCH
Confidence 3569999998877 68999999999999753
No 114
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=27.54 E-value=5.3e+02 Score=24.89 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=29.9
Q ss_pred HHHHHhhcCCEEEEEcCCchHHHHHHHHHHhhhcceEeeEEE
Q 004349 474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAI 515 (759)
Q Consensus 474 L~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~~~p~l~di~l 515 (759)
+..+|+.-|..+..+.+.+++++++.+.+.. ..|.+-++.+
T Consensus 131 ~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~i 171 (172)
T cd02004 131 YDLVAEAFGGKGELVTTPEELKPALKRALAS-GKPALINVII 171 (172)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHHHc-CCCEEEEEEc
Confidence 5678888888888898888888888876653 4566655543
No 115
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=26.15 E-value=6.8e+02 Score=28.49 Aligned_cols=39 Identities=8% Similarity=-0.014 Sum_probs=19.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhhhcceEeeEEEEecCC
Q 004349 482 RGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKD 520 (759)
Q Consensus 482 gG~~~~v~d~~~l~~~l~~~l~~~~~p~l~di~l~~~~~ 520 (759)
.|...|-...++..+.++++......-.+....++.+.+
T Consensus 289 ~G~~hFrv~~~~g~~I~~~lr~~~sG~~vP~~v~d~pgg 327 (417)
T TIGR03820 289 EGLSHFRTPVGKGIEIIESLIGHTSGFAVPTYVVDAPGG 327 (417)
T ss_pred CCcccccCcHHHHHHHHHHHHHhCCCCCceEEEEecCCC
Confidence 344444344444555566655555444444455555433
No 116
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=25.24 E-value=2.8e+02 Score=23.76 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=32.8
Q ss_pred EEEEEEEEEccCCCCceeEEEEEeecCCCceEEEEEEEECCEEEEEEEEeeccccccccccccccccceeCCeEEEEccc
Q 004349 104 VRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQ 183 (759)
Q Consensus 104 vtv~q~f~N~~~~~~~~~E~~y~FPLpe~a~V~~f~~~i~gk~i~g~V~eke~A~~~~~~~~~~~aall~~n~F~~~Vgn 183 (759)
+.++.+..| +++++++-. || .|+.++=.|++++... .+.-. +...|+.-+..
T Consensus 2 v~~~l~v~N---~s~~~v~l~--f~--------------sgq~~D~~v~d~~g~~-vwrwS--------~~~~FtQal~~ 53 (82)
T PF12690_consen 2 VEFTLTVTN---NSDEPVTLQ--FP--------------SGQRYDFVVKDKEGKE-VWRWS--------DGKMFTQALQE 53 (82)
T ss_dssp EEEEEEEEE----SSS-EEEE--ES--------------SS--EEEEEE-TT--E-EEETT--------TT-------EE
T ss_pred EEEEEEEEe---CCCCeEEEE--eC--------------CCCEEEEEEECCCCCE-EEEec--------CCchhhheeeE
Confidence 456777788 467776633 33 3566666666444322 11111 12234433333
Q ss_pred --cCCCCEEEEEEEEEEEeeecCCeEEE
Q 004349 184 --IDGGSYLSIRLRWSQKLSYRDGEFSV 209 (759)
Q Consensus 184 --Ippg~~v~V~l~Y~q~L~~~~g~~~l 209 (759)
|+||+.+..+.+|.+.-.. .|.|.+
T Consensus 54 ~~l~pGe~~~~~~~~~~~~~~-~G~Y~~ 80 (82)
T PF12690_consen 54 ETLEPGESLTYEETWDLKDLS-PGEYTL 80 (82)
T ss_dssp EEE-TT-EEEEEEEESS-----SEEEEE
T ss_pred EEECCCCEEEEEEEECCCCCC-CceEEE
Confidence 7999998888877744222 566654
No 117
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.70 E-value=3.4e+02 Score=27.11 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=48.3
Q ss_pred ceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHh--c------c
Q 004349 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIG--I------N 398 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~--~------~ 398 (759)
.-+|||+|.+. -+++..+|+-+..++..-. -...-+..|.+....-- ..+...+.+.+..-. . .
T Consensus 86 ~~lIfVvDS~D---r~Ri~eak~eL~~~l~~~~-l~~~~llv~aNKqD~~~----als~~ei~~~L~l~~l~~~~w~iq~ 157 (181)
T KOG0070|consen 86 QGLIFVVDSSD---RERIEEAKEELHRMLAEPE-LRNAPLLVFANKQDLPG----ALSAAEITNKLGLHSLRSRNWHIQS 157 (181)
T ss_pred cEEEEEEeCCc---HHHHHHHHHHHHHHHcCcc-cCCceEEEEechhhccc----cCCHHHHHhHhhhhccCCCCcEEee
Confidence 45999999665 3478889999988887643 33556777776643211 123444444443211 0 0
Q ss_pred ccCCCCCchHHHHHHHHHHHh
Q 004349 399 FIAGGSTNICAPLTKAVEMLT 419 (759)
Q Consensus 399 ~~~~GgT~i~~aL~~A~~~l~ 419 (759)
--+.-|.-+.++|++..+.+.
T Consensus 158 ~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 158 TCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred ccccccccHHHHHHHHHHHHh
Confidence 113345556666666555543
No 118
>PRK05434 phosphoglyceromutase; Provisional
Probab=23.29 E-value=4.4e+02 Score=30.78 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCC-ChHHHHHHHHHHHHcCCCCCceEEEEEecCCcC
Q 004349 408 CAPLTKAVEMLTNSRGSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (759)
Q Consensus 408 ~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n 470 (759)
.++|..+++..+...+..-.+=|+|||.+. ..+++...++. +.+.+-..++||.|.=|.++.
T Consensus 95 n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~-a~~~g~~~v~vH~~~DGRD~~ 157 (507)
T PRK05434 95 NPALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLEL-AKEEGVKKVYVHAFLDGRDTP 157 (507)
T ss_pred CHHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHH-HHHcCCCEEEEEEecCCCCCC
Confidence 456666666655433334456678888873 44555444433 333444467788887776654
No 119
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=22.18 E-value=1.3e+02 Score=29.37 Aligned_cols=42 Identities=21% Similarity=0.447 Sum_probs=36.4
Q ss_pred CceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEE
Q 004349 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIV 367 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii 367 (759)
++--+||+|-.|+|.....+..++-+..+|.--.++|.+=|-
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~r 137 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVESLREEISAILSVATPEDEVLVR 137 (155)
T ss_pred CCCeEEEEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 456799999999999988999999999999988888876543
No 120
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=21.75 E-value=5.7e+02 Score=29.86 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCC-CChHHHHHHHHHHHHcCCCCCceEEEEEecCCcC
Q 004349 408 CAPLTKAVEMLTNSRGSIPIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (759)
Q Consensus 408 ~~aL~~A~~~l~~~~~~~~~IiLlTDG~~-~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n 470 (759)
..+|..+++..++..+..-.+=|+|||.+ +..+++...++. ..+.+...++||.|.=|.++.
T Consensus 91 n~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~-a~~~g~~~v~vH~~~DGRD~~ 153 (501)
T TIGR01307 91 NPALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIEL-AAERGIEKVVLHAFTDGRDTA 153 (501)
T ss_pred CHHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHH-HHHcCCCeEEEEEecCCCCCC
Confidence 34455555554433333335566777776 344444444433 333333356677776665543
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=20.94 E-value=3.6e+02 Score=26.14 Aligned_cols=28 Identities=32% Similarity=0.550 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCCCCChHHHHHHHHHHHHh
Q 004349 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSK 357 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~ 357 (759)
.-++||+|.|.. .++..+++.+..++..
T Consensus 83 ~~iIfVvDssd~---~~l~e~~~~L~~ll~~ 110 (175)
T PF00025_consen 83 DGIIFVVDSSDP---ERLQEAKEELKELLND 110 (175)
T ss_dssp SEEEEEEETTGG---GGHHHHHHHHHHHHTS
T ss_pred ceeEEEEecccc---eeecccccchhhhcch
Confidence 459999998853 3788999999988875
No 122
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=20.88 E-value=1.6e+02 Score=24.62 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=17.2
Q ss_pred cccCCCCEEEEEEEEEEEeeecCCeEEEEE
Q 004349 182 PQIDGGSYLSIRLRWSQKLSYRDGEFSVNV 211 (759)
Q Consensus 182 gnIppg~~v~V~l~Y~q~L~~~~g~~~l~l 211 (759)
..|+||+++.+.++-.-+-....|.|.+.+
T Consensus 44 ~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~ 73 (78)
T PF10633_consen 44 PSLPPGESVTVTFTVTVPADAAPGTYTVTV 73 (78)
T ss_dssp --B-TTSEEEEEEEEEE-TT--SEEEEEEE
T ss_pred ccCCCCCEEEEEEEEECCCCCCCceEEEEE
Confidence 368889888887777666555567766544
No 123
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.50 E-value=30 Score=36.45 Aligned_cols=25 Identities=40% Similarity=1.149 Sum_probs=0.0
Q ss_pred HHhhcccccccccC---cccc-ccccccc
Q 004349 697 FVKAASNCCSTLGN---KCCC-LCCIECC 721 (759)
Q Consensus 697 ~~~~~~~~~~~~~~---~~~~-~~~~~~~ 721 (759)
++++-.-||+-+-. |||| |||..||
T Consensus 122 ~~~~~~a~~dll~g~~~c~~c~~cc~~~~ 150 (279)
T KOG0716|consen 122 WIKATAACFDLLTGQRHCLCCRACCCCCC 150 (279)
T ss_pred hhhHHhhhhhhhhcchhhhhHHhHhhhhc
Done!