Query 004349
Match_columns 759
No_of_seqs 406 out of 2216
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 22:23:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fx5_A VON willebrand factor t 99.9 2.5E-22 8.6E-27 226.7 23.5 190 324-518 75-270 (464)
2 3ibs_A Conserved hypothetical 99.8 5E-20 1.7E-24 186.9 18.9 176 323-506 8-213 (218)
3 1ijb_A VON willebrand factor; 99.8 8.8E-20 3E-24 183.6 20.3 176 325-507 12-197 (202)
4 1q0p_A Complement factor B; VO 99.8 3.1E-20 1.1E-24 188.8 14.7 181 324-504 13-218 (223)
5 4hqo_A Sporozoite surface prot 99.8 2.8E-19 9.7E-24 187.8 18.1 180 325-508 17-209 (266)
6 4hqf_A Thrombospondin-related 99.8 7E-19 2.4E-23 186.2 19.2 180 325-508 20-212 (281)
7 3zqk_A VON willebrand factor; 99.8 4E-19 1.4E-23 178.3 16.3 169 323-507 18-195 (199)
8 1shu_X Anthrax toxin receptor 99.8 1.8E-18 6.3E-23 170.1 17.3 173 325-505 5-181 (182)
9 1mf7_A Integrin alpha M; cell 99.8 1.2E-19 4.2E-24 180.9 8.4 175 325-507 4-191 (194)
10 2b2x_A Integrin alpha-1; compu 99.8 1.7E-18 5.7E-23 176.8 16.7 173 325-507 21-213 (223)
11 1atz_A VON willebrand factor; 99.8 3.6E-18 1.2E-22 169.6 17.2 164 325-497 4-176 (189)
12 1pt6_A Integrin alpha-1; cell 99.8 2.6E-18 8.9E-23 174.1 16.2 173 325-507 6-198 (213)
13 3n2n_F Anthrax toxin receptor 99.8 1.8E-18 6.1E-23 170.7 14.5 172 324-505 5-184 (185)
14 1n3y_A Integrin alpha-X; alpha 99.8 1.7E-19 5.8E-24 180.2 7.1 176 324-506 7-194 (198)
15 1v7p_C Integrin alpha-2; snake 99.8 1.1E-17 3.7E-22 167.8 19.2 172 325-506 5-196 (200)
16 1mjn_A Integrin alpha-L; rossm 99.7 5.8E-19 2E-23 174.1 4.9 166 326-504 2-178 (179)
17 2xgg_A Microneme protein 2; A/ 99.7 3.6E-17 1.2E-21 161.0 15.5 145 325-476 16-170 (178)
18 2odp_A Complement C2; C3/C5 co 99.7 1.2E-17 4.1E-22 191.3 12.0 180 324-503 7-211 (509)
19 2x31_A Magnesium-chelatase 60 99.7 1E-19 3.6E-24 180.5 -4.9 174 323-505 2-186 (189)
20 1rrk_A Complement factor B; BB 99.7 4.8E-17 1.7E-21 185.6 15.7 182 326-507 1-207 (497)
21 3hrz_D Complement factor B; se 99.7 3.7E-17 1.3E-21 195.6 13.6 189 324-512 241-454 (741)
22 3k6s_A Integrin alpha-X; cell 99.6 1.2E-15 4E-20 188.2 5.4 176 324-506 128-315 (1095)
23 2x5n_A SPRPN10, 26S proteasome 99.5 6.7E-13 2.3E-17 132.2 18.4 155 327-492 3-174 (192)
24 4b4t_W RPN10, 26S proteasome r 99.5 4.4E-13 1.5E-17 139.3 16.1 146 328-483 5-163 (268)
25 2ww8_A RRGA, cell WALL surface 99.4 1.7E-12 5.9E-17 155.9 14.5 115 323-437 221-391 (893)
26 1yvr_A RO autoantigen, 60-kDa 99.2 4.7E-11 1.6E-15 137.4 12.1 134 324-468 366-504 (538)
27 1jey_B KU80; double-strand DNA 99.1 4.2E-10 1.4E-14 130.2 12.3 155 327-490 8-229 (565)
28 2nvo_A RO sixty-related protei 98.9 1.7E-09 5.9E-14 124.0 9.5 134 324-468 360-500 (535)
29 3rag_A Uncharacterized protein 98.7 6.1E-09 2.1E-13 105.7 5.4 89 324-420 132-227 (242)
30 1jey_A KU70; double-strand DNA 98.7 9.8E-08 3.4E-12 111.1 14.0 138 326-468 34-208 (609)
31 1pcx_A Protein transport prote 98.3 0.00015 5.2E-09 86.7 29.5 299 313-616 174-571 (810)
32 2nut_A Protein transport prote 98.3 0.00016 5.5E-09 86.1 26.8 176 324-504 130-396 (769)
33 1m2v_B SEC24, protein transpor 98.1 0.00036 1.2E-08 84.3 26.6 299 313-616 290-687 (926)
34 1m2o_A SEC23, protein transpor 98.0 0.0012 4.2E-08 78.5 27.3 176 324-503 119-389 (768)
35 2iue_A Pactolus I-domain; memb 97.9 6.1E-05 2.1E-09 75.3 12.3 104 325-436 2-116 (212)
36 3eh1_A Protein transport prote 97.9 0.0028 9.5E-08 75.1 28.3 288 323-618 157-539 (751)
37 3rag_A Uncharacterized protein 97.9 3.7E-05 1.3E-09 78.0 9.4 78 423-505 8-90 (242)
38 3fcs_B Integrin beta-3; beta p 97.8 0.00013 4.3E-09 85.5 12.9 188 309-509 99-355 (690)
39 3t3p_B Integrin beta-3; integr 97.5 0.0012 3.9E-08 73.3 14.4 186 309-509 99-355 (472)
40 3k6s_B Integrin beta-2; cell r 97.3 0.00087 3E-08 78.2 11.7 116 308-436 91-245 (687)
41 3efo_B SEC24 related gene fami 97.3 0.043 1.5E-06 65.2 26.2 226 322-550 173-475 (770)
42 3vi3_B Integrin beta-1; beta p 97.2 0.013 4.5E-07 64.4 18.6 187 309-509 110-362 (454)
43 3v4v_B Integrin beta-7; cell a 97.0 0.012 4.3E-07 65.3 16.6 183 309-509 120-374 (503)
44 3eh2_A Protein transport prote 96.8 0.041 1.4E-06 65.3 20.3 168 322-492 169-399 (766)
45 4g2a_A Hypothetical protein; t 96.6 0.082 2.8E-06 55.3 17.6 110 81-203 11-150 (322)
46 3isy_A Bsupi, intracellular pr 25.1 2.9E+02 0.0099 24.4 8.4 82 102-213 18-101 (120)
47 2xzz_A Protein-glutamine gamma 23.8 1.3E+02 0.0044 25.8 5.7 27 169-197 46-72 (102)
No 1
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.89 E-value=2.5e-22 Score=226.68 Aligned_cols=190 Identities=22% Similarity=0.211 Sum_probs=164.2
Q ss_pred CCCceEEEEEcCCCCCC--CCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeecc---ccccCHHHHHHHHHHHhcc
Q 004349 324 VFKKDVIFIVDISGSMQ--GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTS---MELATKEAVERAHQWIGIN 398 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~--g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~---~~~~t~~~i~~a~~~I~~~ 398 (759)
..+.+++||||+||||. +.+|+.+|+++..+++.|.++++|+|+.|++.+..+.+. ....+..+.+.+.++|+ .
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~-~ 153 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVG-R 153 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHH-T
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHH-c
Confidence 46789999999999999 899999999999999999999999999999999887765 34457788888999997 7
Q ss_pred ccCCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHH
Q 004349 399 FIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (759)
Q Consensus 399 ~~~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~-~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~L 477 (759)
+.+.|||+++.||+.|++.+...++..+.|||||||.+++.. .......+.. ..+++||+||+|.+.|..+|+.|
T Consensus 154 L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~~~~l~~~~~a~----~~~i~i~tiGiG~~~d~~~L~~I 229 (464)
T 4fx5_A 154 LHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETPADLARAIQSS----IGNFTADCRGIGEDWEPKELRKI 229 (464)
T ss_dssp CCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSCHHHHHHHHHHH----TTTCEEEEEEESSSSCHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCccCHHHHHHH
Confidence 889999999999999999998766667899999999987432 2222222221 23589999999999999999999
Q ss_pred HhhcCCEEEEEcCCchHHHHHHHHHHhhhcceEeeEEEEec
Q 004349 478 AMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTL 518 (759)
Q Consensus 478 A~~~gG~~~~v~d~~~l~~~l~~~l~~~~~p~l~di~l~~~ 518 (759)
|..++|.|+++.+.+++...+.+++..+.++.++|+.+.+.
T Consensus 230 A~~tgG~~~~v~d~~~L~~~f~~i~~~~~s~~~~dv~l~l~ 270 (464)
T 4fx5_A 230 ADALLGTVGIIRDPATLAEDFREMTAKSMGKEVADVALRLW 270 (464)
T ss_dssp HHHTTCCEEEESSGGGHHHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred HHhCCCEEEEcCCHHHHHHHHHHHHHHhhchheeeeEEEEE
Confidence 99999999999999999999999999999999999988864
No 2
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=5e-20 Score=186.87 Aligned_cols=176 Identities=20% Similarity=0.256 Sum_probs=139.8
Q ss_pred CCCCceEEEEEcCCCCCCCC-----ChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhc
Q 004349 323 KVFKKDVIFIVDISGSMQGK-----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGI 397 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~-----~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~ 397 (759)
+..+.+++||||+||||.+. +++.+|+++..++..++ +++|+|+.|++++....+... +.+.+..+++.+..
T Consensus 8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~~--~~~~~~~~l~~l~~ 84 (218)
T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPITS--DYISAKMFLESISP 84 (218)
T ss_dssp --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEES--CHHHHHHHHHTCCG
T ss_pred ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCCC--CHHHHHHHHHhcCc
Confidence 45789999999999999975 89999999999999985 899999999999887776543 67777777777654
Q ss_pred cccCCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecC----------
Q 004349 398 NFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGS---------- 467 (759)
Q Consensus 398 ~~~~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~---------- 467 (759)
.....|+|++..||..|++.+...+...+.|||+|||..+.. ...+.++ .+. ..+++||+||+|.
T Consensus 85 ~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-~~~~~~~-~~~---~~~i~v~~igig~~~~~~~~~~g 159 (218)
T 3ibs_A 85 SLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-GAVEAAK-AAA---EKGIQVSVLGVGMPEGAPIPVEG 159 (218)
T ss_dssp GGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-CHHHHHH-HHH---TTTEEEEEEEESCTTCEECBCTT
T ss_pred ccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-cHHHHHH-HHH---hcCCEEEEEEecCCCCCcccccC
Confidence 445689999999999999988765566789999999998655 2223222 222 2358999999997
Q ss_pred ---------------CcCHHHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHhhh
Q 004349 468 ---------------YCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGF 506 (759)
Q Consensus 468 ---------------~~n~~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~~ 506 (759)
..|..+|+.||..++|.|+++.+..+....+.+.+.++.
T Consensus 160 ~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i~~l~ 213 (218)
T 3ibs_A 160 TNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKMA 213 (218)
T ss_dssp SSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHH
T ss_pred CCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHHhh
Confidence 678999999999999999999986655555555555554
No 3
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.84 E-value=8.8e-20 Score=183.57 Aligned_cols=176 Identities=13% Similarity=0.143 Sum_probs=137.0
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC---CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccC
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~ 401 (759)
.+.+++||||.||||.+.+++.+|+++..+++.|. +++||+|+.|+++++...+.....+.+.+.++++.+. ..
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~---~~ 88 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVK---YA 88 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCC---CC
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCCHHHHHHHHHhCc---CC
Confidence 47899999999999998899999999999999987 4689999999999987777654456666666666442 22
Q ss_pred CC-CCchHHHHHHHHHHH-hc--CCCCCCEEEEEeCCCCCCh--HHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHH
Q 004349 402 GG-STNICAPLTKAVEML-TN--SRGSIPIIFLVTDGAVEDE--RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (759)
Q Consensus 402 ~G-gT~i~~aL~~A~~~l-~~--~~~~~~~IiLlTDG~~~~~--~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~ 475 (759)
+| +|+++.||+.|.+.+ .. +++..+.|||+|||..++. ..+.+.++.. ++ .+++||+||+|...|...|+
T Consensus 89 gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l-~~---~gi~i~~igvG~~~~~~~L~ 164 (202)
T 1ijb_A 89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGL-KK---KKVIVIPVGIGPHANLKQIR 164 (202)
T ss_dssp CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHH-HH---TTEEEEEEEESTTSCHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHHH-HH---CCCEEEEEecCCcCCHHHHH
Confidence 34 499999999998654 32 2345678999999998643 2333333332 22 35899999999999999999
Q ss_pred HHHhhc-CCEEEEEcCCchHHHHHHHHHHhhhc
Q 004349 476 MLAMIS-RGYYGAAYDLDSIEIQMQKLFTRGFS 507 (759)
Q Consensus 476 ~LA~~~-gG~~~~v~d~~~l~~~l~~~l~~~~~ 507 (759)
.||..+ +|+++.+.+.+++...+.++...+..
T Consensus 165 ~iA~~~~~~~~~~~~~~~~L~~~~~~i~~~iC~ 197 (202)
T 1ijb_A 165 LIEKQAPENKAFVLSSVDELEQQRDEIVSYLCD 197 (202)
T ss_dssp HHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHH
T ss_pred HHhCCCCcccEEEeCCHHHHHHHHHHHHHHhhc
Confidence 999964 68888999999999888888776653
No 4
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.83 E-value=3.1e-20 Score=188.78 Aligned_cols=181 Identities=18% Similarity=0.235 Sum_probs=128.2
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC---CCCCeEEEEEECCceEEeecccccc--CHHHHHHHHHHHhcc
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMELA--TKEAVERAHQWIGIN 398 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~--t~~~i~~a~~~I~~~ 398 (759)
..+.+|+||||.||||.+.+++.+|+++..+++.| +++++|+|+.|++.+....+...+. +.+.+..+++.+...
T Consensus 13 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 92 (223)
T 1q0p_A 13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYE 92 (223)
T ss_dssp --CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTT
T ss_pred CCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCCCCCHHHHHHHHHhcccc
Confidence 35789999999999999989999999999998765 4578999999999988766443322 446666666655311
Q ss_pred c-cCCCCCchHHHHHHHHHHHhcCC--------CCCCEEEEEeCCCCC---ChHHHHHHHHHHH------HcCCCCCceE
Q 004349 399 F-IAGGSTNICAPLTKAVEMLTNSR--------GSIPIIFLVTDGAVE---DERQICDAMKSRL------TNGGSICPRI 460 (759)
Q Consensus 399 ~-~~~GgT~i~~aL~~A~~~l~~~~--------~~~~~IiLlTDG~~~---~~~~i~~~v~~~~------~~~~~~~~rI 460 (759)
. ..+|+|++..||+.|++.+.... ...+.|||+|||..+ +.....+.+++.. ......+++|
T Consensus 93 ~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 172 (223)
T 1q0p_A 93 DHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDV 172 (223)
T ss_dssp SCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEE
T ss_pred cccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcEE
Confidence 0 24799999999999999987432 345689999999987 4444455554432 2233456899
Q ss_pred EEEEecCCcCHHHHHHHHhhcCC--EEEEEcCCchHHHHHHHHHHh
Q 004349 461 YTFGIGSYCNHYFLRMLAMISRG--YYGAAYDLDSIEIQMQKLFTR 504 (759)
Q Consensus 461 ~t~GiG~~~n~~lL~~LA~~~gG--~~~~v~d~~~l~~~l~~~l~~ 504 (759)
|+||+|...+...|+.||..++| .++.+.+.+++...+.+++++
T Consensus 173 ~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~~i~~~ 218 (223)
T 1q0p_A 173 YVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDE 218 (223)
T ss_dssp EEEECSSCCCHHHHHHHSCCCTTCCCEEETTC--------------
T ss_pred EEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999 899999888888877776654
No 5
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.81 E-value=2.8e-19 Score=187.79 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=139.7
Q ss_pred CCceEEEEEcCCCCCCCCCh-HHHHHHHHHHHHhCC---CCCeEEEEEECCceEEeeccccc--cCHHHHHHHHHHHhcc
Q 004349 325 FKKDVIFIVDISGSMQGKPL-EDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGIN 398 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i-~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~--~t~~~i~~a~~~I~~~ 398 (759)
.+.||+||||.||||.+..+ +.+|+++..+++.|. ++++|+|+.|++.+....+.... .+...+..+++.+...
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~ 96 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELRKT 96 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTSHHHHCHHHHHHHHHHHHHH
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCCCCccCHHHHHHHHHHhhhc
Confidence 57899999999999998888 589999999999997 67899999999999877765432 1345555555544322
Q ss_pred ccCCCCCchHHHHHHHHHHHhcC---CCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHH
Q 004349 399 FIAGGSTNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (759)
Q Consensus 399 ~~~~GgT~i~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~ 475 (759)
...+|+|+++.||+.|.+++... ++..+.|||||||.+++...+.+.++.... .+++||+||||.+.+..+|+
T Consensus 97 ~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~----~gi~i~~iGiG~~~~~~~L~ 172 (266)
T 4hqo_A 97 YTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQ----RNVRLAVIGIGQGINHQFNR 172 (266)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCHHHHHHHHHHHHH----TTCEEEEEECSSSCCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCchHHHHHHHHHHH----CCCEEEEEecCcccCHHHHH
Confidence 36789999999999999988764 344579999999999876666555554432 25899999999999999999
Q ss_pred HHHhhc--C--CEEEEEcCCchHHHHHHHHHHhhhcc
Q 004349 476 MLAMIS--R--GYYGAAYDLDSIEIQMQKLFTRGFSS 508 (759)
Q Consensus 476 ~LA~~~--g--G~~~~v~d~~~l~~~l~~~l~~~~~p 508 (759)
.||..+ + +.++++.+.+++.+.+..+++++...
T Consensus 173 ~iA~~~~~~g~~~~~~~~d~~~L~~i~~~l~~~iC~~ 209 (266)
T 4hqo_A 173 LIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVCTE 209 (266)
T ss_dssp HHHTCCTTCSSCTTEECSCHHHHHHHHHHHHCCCEEE
T ss_pred HhhCCCCCCCCCCeEEecCHHHHHHHHHHHHhhhccc
Confidence 999875 3 36777888777877666666655543
No 6
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.80 E-value=7e-19 Score=186.20 Aligned_cols=180 Identities=15% Similarity=0.132 Sum_probs=144.6
Q ss_pred CCceEEEEEcCCCCCCCCCh-HHHHHHHHHHHHhCCC---CCeEEEEEECCceEEeeccccc--cCHHHHHHHHHHHhcc
Q 004349 325 FKKDVIFIVDISGSMQGKPL-EDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGIN 398 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i-~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~--~t~~~i~~a~~~I~~~ 398 (759)
.+.||+||||.||||.+..+ +.+|+++..+++.|.. +++|+|+.|++++....+.... .+.+.+..+++.+...
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~~ 99 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLST 99 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHHT
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhhc
Confidence 58999999999999998777 8999999999999976 7799999999999776655433 2467777777777533
Q ss_pred ccCCCCCchHHHHHHHHHHHhcCC---CCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHH
Q 004349 399 FIAGGSTNICAPLTKAVEMLTNSR---GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (759)
Q Consensus 399 ~~~~GgT~i~~aL~~A~~~l~~~~---~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~ 475 (759)
...+|+|+++.||+.|.+.+.... +..+.|||||||..++...+.+.++.... .+++||+||+|.+.+..+|+
T Consensus 100 ~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~~----~gv~i~~igiG~~~~~~~L~ 175 (281)
T 4hqf_A 100 NLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLSD----RGVKIAVFGIGQGINVAFNR 175 (281)
T ss_dssp TGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCHHHHHHHHHHHHH----TTCEEEEEEESSSCCHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCcHHHHHHHHHHHH----CCCEEEEEeCCCccCHHHHH
Confidence 456899999999999998886532 24678999999999876555555544432 35899999999999999999
Q ss_pred HHHhhc--CC--EEEEEcCCchHHHHHHHHHHhhhcc
Q 004349 476 MLAMIS--RG--YYGAAYDLDSIEIQMQKLFTRGFSS 508 (759)
Q Consensus 476 ~LA~~~--gG--~~~~v~d~~~l~~~l~~~l~~~~~p 508 (759)
.||... +| .++.+.+.+++...+..+..++...
T Consensus 176 ~iA~~~~~~g~~~~~~~~~~~~L~~~~~~l~~~iC~~ 212 (281)
T 4hqf_A 176 FLVGCHPSDGKCNLYADSAWENVKNVIGPFMKAVCVE 212 (281)
T ss_dssp HHTTSCSSSSCCTTEEEECGGGHHHHHHHHHHHHHHH
T ss_pred hhhCCCCCCCCCceEEecchhhhhcccCCcccccCCC
Confidence 999873 44 7888899999988888887777655
No 7
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.80 E-value=4e-19 Score=178.30 Aligned_cols=169 Identities=14% Similarity=0.151 Sum_probs=134.5
Q ss_pred CCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC---CCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccc
Q 004349 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~ 399 (759)
...+.|++||||.||||.+.+++.+|+++..+++.| ++++||+|+.|+++++...+.....+.+.+.++++.+.
T Consensus 18 ~~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~--- 94 (199)
T 3zqk_A 18 NSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRLREIR--- 94 (199)
T ss_dssp -CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCCHHHHHHHHHHCC---
T ss_pred CCCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCCHHHHHHHHHhCc---
Confidence 457899999999999999999999999999999999 46889999999999988777765557777777766543
Q ss_pred cCCC-CCchHHHHHHHHHHHhc-----CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHH
Q 004349 400 IAGG-STNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYF 473 (759)
Q Consensus 400 ~~~G-gT~i~~aL~~A~~~l~~-----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~l 473 (759)
..+| +|+++.||+.|++.+.. +++..+.|||+|||...+... + ...+++||+||+|.++|...
T Consensus 95 ~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~----------~-~~~~v~v~~iGiG~~~~~~~ 163 (199)
T 3zqk_A 95 YQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK----------R-LPGDIQVVPIGVGPNANVQE 163 (199)
T ss_dssp CCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC----------C-CCTTEEEEEEEESTTCCHHH
T ss_pred CCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH----------H-HhCCCEEEEEEcCCCCCHHH
Confidence 2344 59999999999885321 223457999999999755321 1 12468999999999999999
Q ss_pred HHHHHhhcCCEEEEEcCCchHHHHHHHHHHhhhc
Q 004349 474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFS 507 (759)
Q Consensus 474 L~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~~~ 507 (759)
|+.||. +++ ++++.+.+++...+.+++.++..
T Consensus 164 L~~iA~-~~~-~~~~~~~~~L~~~~~~l~~~~c~ 195 (199)
T 3zqk_A 164 LERIGW-PNA-PILIQDFETLPREAPDLVLQRCC 195 (199)
T ss_dssp HHHHHT-TSC-CEEESCTTTHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCc-eEEeCCHHHHHHHHHHHHHhhcc
Confidence 999998 444 45899999999999888887653
No 8
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.79 E-value=1.8e-18 Score=170.11 Aligned_cols=173 Identities=14% Similarity=0.207 Sum_probs=131.1
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHh-CCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCC
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~-L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~G 403 (759)
.+.+++||||.||||.+..+. .++++..++.. +.++++|+|+.|++..+...+.. .+.+.+..+++.+. ...+.|
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~--~~~~~~~~~l~~l~-~~~~~g 80 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT--GDRGKISKGLEDLK-RVSPVG 80 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE--CCHHHHHHHHHHHH-TCCCCS
T ss_pred CceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCC--CCHHHHHHHHHhcc-cCCCCC
Confidence 578999999999999975442 44555555554 45789999999999988776654 47888888888886 466889
Q ss_pred CCchHHHHHHHHHHHhcC--CCCCCEEEEEeCCCCCChHH-HHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhh
Q 004349 404 STNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDERQ-ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480 (759)
Q Consensus 404 gT~i~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~~~~~~-i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~ 480 (759)
+|++..||+.|++.+... ++..+.|||+|||..++... ......+.+.+ .+++||+||+| ..+...|+.||..
T Consensus 81 ~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~---~~i~i~~igvg-~~~~~~L~~ia~~ 156 (182)
T 1shu_X 81 ETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRS---LGASVYCVGVL-DFEQAQLERIADS 156 (182)
T ss_dssp CCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHH---TTCEEEEEECS-SCCHHHHHHHSSS
T ss_pred CchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHh---CCCEEEEEeCC-cCCHHHHHHHhCC
Confidence 999999999999998654 34567999999999865431 12222223332 35899999999 5689999999999
Q ss_pred cCCEEEEEcCCchHHHHHHHHHHhh
Q 004349 481 SRGYYGAAYDLDSIEIQMQKLFTRG 505 (759)
Q Consensus 481 ~gG~~~~v~d~~~l~~~l~~~l~~~ 505 (759)
++|.|+...+.+++...+.++.+++
T Consensus 157 ~~~~~~~~~~~~~L~~~~~~i~~~i 181 (182)
T 1shu_X 157 KEQVFPVKGGFQALKGIINSILAQS 181 (182)
T ss_dssp GGGEEESSSTTHHHHHHHHHHHHTB
T ss_pred CCceEEccCCHHHHHHHHHHHHhcc
Confidence 9888776657788887777765543
No 9
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.78 E-value=1.2e-19 Score=180.95 Aligned_cols=175 Identities=18% Similarity=0.244 Sum_probs=131.9
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC-CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhcccc-CC
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFI-AG 402 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~-~~ 402 (759)
.+.+++||||.||||.+.+++.+|+++..+++.|. ++++|+|+.|++.++...+..... +.....+.|+ .+. .+
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~~~~---~~~~~~~~i~-~l~~~~ 79 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQ---NNPNPRSLVK-PITQLL 79 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHHHH---HSCCHHHHHT-TCCCCC
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecCCcC---CHHHHHHHHH-hCcCCC
Confidence 46899999999999998899999999999999986 467999999999988776653322 2233444454 344 58
Q ss_pred CCCchHHHHHHHHHHHhc-----CCCCCCEEEEEeCCCCC-ChHHHHHHHHHHHHcCCCCCceEEEEEecCCcC----HH
Q 004349 403 GSTNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGSYCN----HY 472 (759)
Q Consensus 403 GgT~i~~aL~~A~~~l~~-----~~~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n----~~ 472 (759)
|+|++..||+.|.+.+.. +++..+.|||+|||..+ +.....+.++. +.+ .+++||+||+|...| ..
T Consensus 80 g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~-~~~---~gi~v~~igvG~~~~~~~~~~ 155 (194)
T 1mf7_A 80 GRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPE-ADR---EGVIRYVIGVGDAFRSEKSRQ 155 (194)
T ss_dssp SCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHH-HHH---TTEEEEEEEESGGGCSHHHHH
T ss_pred CCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHH-HHH---CCCEEEEEEecccccccccHH
Confidence 999999999999975422 22345789999999987 43311222222 222 358999999999875 78
Q ss_pred HHHHHHhhc-CCEEEEEcCCchHHHHHHHHHHhhhc
Q 004349 473 FLRMLAMIS-RGYYGAAYDLDSIEIQMQKLFTRGFS 507 (759)
Q Consensus 473 lL~~LA~~~-gG~~~~v~d~~~l~~~l~~~l~~~~~ 507 (759)
.|+.||..+ +|+++.+.+.+++...+.++.+++..
T Consensus 156 ~L~~iA~~~~~~~~~~~~~~~~l~~~~~~i~~~ic~ 191 (194)
T 1mf7_A 156 ELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC 191 (194)
T ss_dssp HHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT
T ss_pred HHHHHhCCCCcccEEEeCCHHHHHHHHHHHHHHHhh
Confidence 999999985 58889999988888888877776653
No 10
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.78 E-value=1.7e-18 Score=176.82 Aligned_cols=173 Identities=17% Similarity=0.188 Sum_probs=132.4
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC---CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccC
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~ 401 (759)
.+.+++||||.||||. .++.+|+++..+++.|. ++++|+|+.|+++++...+.....+... .++.|+ .+..
T Consensus 21 ~~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~~~~~~~---~~~~i~-~l~~ 94 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEE---VLVAAN-KIVQ 94 (223)
T ss_dssp -CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTTCCSHHH---HHHHHT-TCCC
T ss_pred CcceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCCCCCHHH---HHHHHH-hhhc
Confidence 4789999999999998 59999999999999885 6889999999999887776643334444 444554 3444
Q ss_pred C-C-CCchHHHHHHHHHH-Hh----cCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcC----
Q 004349 402 G-G-STNICAPLTKAVEM-LT----NSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN---- 470 (759)
Q Consensus 402 ~-G-gT~i~~aL~~A~~~-l~----~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n---- 470 (759)
. | +|++..||+.|.+. +. .+++..+.|||+|||..++.....+.++ .+++ .+++||+||+|...|
T Consensus 95 ~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~-~~~~---~gi~v~~igvG~~~~~~~~ 170 (223)
T 2b2x_A 95 RGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQ-DCED---ENIQRFSIAILGHYNRGNL 170 (223)
T ss_dssp CCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHH-HHHT---TTEEEEEEEECGGGC---C
T ss_pred cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHH-HHHH---CCCEEEEEEecCccccccc
Confidence 3 4 49999999999987 33 1234567899999999887654433333 3332 358999999998766
Q ss_pred -----HHHHHHHHhh-cCCEEEEEcCCchHHHHHHHHHHhhhc
Q 004349 471 -----HYFLRMLAMI-SRGYYGAAYDLDSIEIQMQKLFTRGFS 507 (759)
Q Consensus 471 -----~~lL~~LA~~-~gG~~~~v~d~~~l~~~l~~~l~~~~~ 507 (759)
...|+.||.. ++|.|+.+.+.+++...+.++.+++..
T Consensus 171 ~~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~i~~~i~~~ic~ 213 (223)
T 2b2x_A 171 STEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFA 213 (223)
T ss_dssp CCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC-
T ss_pred cchhHHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhcC
Confidence 4789999998 899999999999998877777666643
No 11
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.78 E-value=3.6e-18 Score=169.64 Aligned_cols=164 Identities=18% Similarity=0.174 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCC---CCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccC
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~ 401 (759)
.+.+++||||.||||.+.+++.+|+++..+++.+.. +++|+|+.|+++++...+.....+.+.+..+++.+. ..
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~---~~ 80 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQ---RE 80 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCC---CC
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCCHHHHHHHHHhCc---CC
Confidence 468999999999999989999999999999999863 369999999999987777644557777777776443 25
Q ss_pred CCCCchHHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHH
Q 004349 402 GGSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM 476 (759)
Q Consensus 402 ~GgT~i~~aL~~A~~~l~~~-----~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~ 476 (759)
+|||+++.||+.|.+.+... ++..+.+|++|||..++.. .+.+ +.+.+ .+++||+||+|...|...|+.
T Consensus 81 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~~--~~~~-~~~~~---~gi~v~~igvG~~~~~~~L~~ 154 (189)
T 1atz_A 81 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDSV--DAAA-DAARS---NRVTVFPIGIGDRYDAAQLRI 154 (189)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSCC--HHHH-HHHHH---TTEEEEEEEESSSSCHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCchH--HHHH-HHHHH---CCCEEEEEEcCCcCCHHHHHH
Confidence 79999999999999988652 2334568889999875432 2222 22222 358999999999999999999
Q ss_pred HHhhcCC-EEEEEcCCchHHHH
Q 004349 477 LAMISRG-YYGAAYDLDSIEIQ 497 (759)
Q Consensus 477 LA~~~gG-~~~~v~d~~~l~~~ 497 (759)
||..+++ +++.+.+.+++...
T Consensus 155 iA~~~~~~~~~~~~~~~~~~~l 176 (189)
T 1atz_A 155 LAGPAGDSNVVKLQRIEDLPTM 176 (189)
T ss_dssp HTGGGGGGGCEEESSTTHHHHH
T ss_pred HHCCCcccCEEEecChhhHHHH
Confidence 9999876 45677777777654
No 12
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.77 E-value=2.6e-18 Score=174.06 Aligned_cols=173 Identities=18% Similarity=0.216 Sum_probs=132.1
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC---CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccC
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~ 401 (759)
.+.+++||||.||||. .++.+|+++..+++.|. ++++|+|+.|+++++...+.....+...+.++++ .+..
T Consensus 6 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~~~~~~~~~~~i~----~l~~ 79 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAK----KIVQ 79 (213)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHH----TCCC
T ss_pred CCccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccccCCHHHHHHHHH----hccC
Confidence 4689999999999998 59999999999999885 6889999999999987776644344554444444 3443
Q ss_pred -CC-CCchHHHHHHHHHHH-h----cCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcC----
Q 004349 402 -GG-STNICAPLTKAVEML-T----NSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN---- 470 (759)
Q Consensus 402 -~G-gT~i~~aL~~A~~~l-~----~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n---- 470 (759)
+| +|++..||+.|.+.+ . .+++..+.|||+|||..++.....+.++. +++ .+++||+||+|...|
T Consensus 80 ~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~-~~~---~gi~i~~igig~~~~~~~~ 155 (213)
T 1pt6_A 80 RGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQD-CED---ENIQRFSIAILGSYNRGNL 155 (213)
T ss_dssp CCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHH-HHH---TTEEEEEEEECHHHHHTTC
T ss_pred CCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHH-HHH---CCCEEEEEEeccccccccc
Confidence 44 599999999999874 3 22445679999999998876543333332 332 358999999997654
Q ss_pred -----HHHHHHHHhh-cCCEEEEEcCCchHHHHHHHHHHhhhc
Q 004349 471 -----HYFLRMLAMI-SRGYYGAAYDLDSIEIQMQKLFTRGFS 507 (759)
Q Consensus 471 -----~~lL~~LA~~-~gG~~~~v~d~~~l~~~l~~~l~~~~~ 507 (759)
...|+.||.. ++|.++.+.+.+++...+..+.+++..
T Consensus 156 ~~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~i~~~l~~~i~~ 198 (213)
T 1pt6_A 156 STEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFA 198 (213)
T ss_dssp CCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC
T ss_pred cchhhHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhee
Confidence 4789999998 789999999999888888877776654
No 13
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.77 E-value=1.8e-18 Score=170.68 Aligned_cols=172 Identities=16% Similarity=0.231 Sum_probs=131.9
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC-CCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCC
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL-DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L-~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~ 402 (759)
..+.|++||||.||||.+ .++..++++..++..+ .++++|+|+.|+++++...+... +.+.+..+++.+. ...++
T Consensus 5 ~~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~~--~~~~~~~~i~~l~-~~~~~ 80 (185)
T 3n2n_F 5 YGGFDLYFILDKSGSVLH-HWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTE--DREQIRQGLEELQ-KVLPG 80 (185)
T ss_dssp BSEEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEEC--CHHHHHHHHHHHH-TCCCC
T ss_pred CCCeeEEEEEeCCCChhh-hHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccCC--CHHHHHHHHHHHh-hhcCC
Confidence 357899999999999987 5788888888887764 56789999999999987776653 8888999999887 44679
Q ss_pred CCCchHHHHHHHHHHHhc----CCCCCCEEEEEeCCCCCChHH--HHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHH
Q 004349 403 GSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDGAVEDERQ--ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM 476 (759)
Q Consensus 403 GgT~i~~aL~~A~~~l~~----~~~~~~~IiLlTDG~~~~~~~--i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~ 476 (759)
|+|++..||+.|.+.+.. .....+.|||+|||..++... .... .+.+.+ .+++||+||+| +.|...|+.
T Consensus 81 g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~-~~~~~~---~gi~i~~igvg-~~~~~~L~~ 155 (185)
T 3n2n_F 81 GDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSERE-ANRSRD---LGAIVYAVGVK-DFNETQLAR 155 (185)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHH-HHHHHH---TTEEEEEEECS-SCCHHHHTT
T ss_pred CCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHH-HHHHHH---CCCEEEEEEec-cCCHHHHHH
Confidence 999999999999997732 123457999999999865542 1222 223332 35899999999 779999999
Q ss_pred HHhhcCCEEEEEcC-CchHHHHHHHHHHhh
Q 004349 477 LAMISRGYYGAAYD-LDSIEIQMQKLFTRG 505 (759)
Q Consensus 477 LA~~~gG~~~~v~d-~~~l~~~l~~~l~~~ 505 (759)
||..+ |.++++.+ .+++...+.++.+++
T Consensus 156 iA~~~-~~~~~~~~~~~~L~~~~~~i~~~i 184 (185)
T 3n2n_F 156 IADSK-DHVFPVNDGFQALQGIIHSILKKS 184 (185)
T ss_dssp TSSSG-GGEEEHHHHHHHHHHHHHHHHHTB
T ss_pred HhCCC-CCeEEeccHHHHHHHHHHHHHHhc
Confidence 99765 66666776 777777766665543
No 14
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.77 E-value=1.7e-19 Score=180.15 Aligned_cols=176 Identities=19% Similarity=0.236 Sum_probs=132.7
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC-CCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCC
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL-DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L-~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~ 402 (759)
..+.+++||||.||||.+..++.+++++..+++.| .++++|+|+.|++..+...+... ..+.....+.++.....+
T Consensus 7 ~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~~---~~~~~~~~~~i~~l~~~~ 83 (198)
T 1n3y_A 7 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEE---FRRSSNPLSLLASVHQLQ 83 (198)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHHH---HHHCSSGGGGGTTCCCCC
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecCc---cCCHHHHHHHHhcCcCCC
Confidence 35789999999999999888899999999999999 68999999999999877665422 222233444554222368
Q ss_pred CCCchHHHHHHHHHHH-hc----CCCCCCEEEEEeCCCCC-ChHHHHHHHHHHHHcCCCCCceEEEEEecCCc----CHH
Q 004349 403 GSTNICAPLTKAVEML-TN----SRGSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGSYC----NHY 472 (759)
Q Consensus 403 GgT~i~~aL~~A~~~l-~~----~~~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~----n~~ 472 (759)
|+|++..||+.|++.+ .. +++..+.|||+|||..+ +.....+.++. +.+ .+++||+||+|... +..
T Consensus 84 g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~-~~~---~gi~i~~igvG~~~~~~~~~~ 159 (198)
T 1n3y_A 84 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPM-ADA---AGIIRYAIGVGLAFQNRNSWK 159 (198)
T ss_dssp SCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHH-HHH---TTCEEEEEEESGGGGSSTTHH
T ss_pred CCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHH-HHH---CCCEEEEEEccccccccccHH
Confidence 9999999999999544 32 13456799999999987 43222222222 222 35899999999987 689
Q ss_pred HHHHHHhhcCCEE-EEEcCCchHHHHHHHHHHhhh
Q 004349 473 FLRMLAMISRGYY-GAAYDLDSIEIQMQKLFTRGF 506 (759)
Q Consensus 473 lL~~LA~~~gG~~-~~v~d~~~l~~~l~~~l~~~~ 506 (759)
.|+.||..++|.| +.+.+.+++...+.++.+++.
T Consensus 160 ~L~~iA~~~~g~~~~~~~~~~~l~~~~~~i~~~ic 194 (198)
T 1n3y_A 160 ELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIF 194 (198)
T ss_dssp HHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHH
T ss_pred HHHHHHcCCCcccEEEeCCHHHHHHHHHHHHhhee
Confidence 9999999999987 778888888888888777664
No 15
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.77 E-value=1.1e-17 Score=167.83 Aligned_cols=172 Identities=19% Similarity=0.194 Sum_probs=130.4
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC---CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccC
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~ 401 (759)
.+.+++||||.||||. .++.+|+++..+++.+. ++++|+|+.|+++++...+.....+...+.++++ .+..
T Consensus 5 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~~~~~~~~~~i~----~l~~ 78 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATS----QTSQ 78 (200)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHH----HCCC
T ss_pred CcccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCcCCHHHHHHHHH----hhhc
Confidence 3689999999999998 59999999999999986 5789999999999988777654345555555554 3443
Q ss_pred -CC-CCchHHHHHHHHHH-Hhc----CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEec-----CCc
Q 004349 402 -GG-STNICAPLTKAVEM-LTN----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIG-----SYC 469 (759)
Q Consensus 402 -~G-gT~i~~aL~~A~~~-l~~----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG-----~~~ 469 (759)
+| +|++..||+.|.+. +.. +++..+.|||+|||..++.....+.++. +++ .+++||+||+| ...
T Consensus 79 ~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~-~~~---~gi~i~~igvg~~~~~~~~ 154 (200)
T 1v7p_C 79 YGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQ-CNH---DNILRFGIAVLGYLNRNAL 154 (200)
T ss_dssp CCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHH-HHH---TTEEEEEEEECHHHHHTTC
T ss_pred cCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHH-HHH---CCCEEEEEEeccccccccc
Confidence 34 69999999999996 432 2344678999999999876544333333 222 35899999994 445
Q ss_pred C----HHHHHHHHhhcCCEE-EEEcCCchHHHHHHHHHHhhh
Q 004349 470 N----HYFLRMLAMISRGYY-GAAYDLDSIEIQMQKLFTRGF 506 (759)
Q Consensus 470 n----~~lL~~LA~~~gG~~-~~v~d~~~l~~~l~~~l~~~~ 506 (759)
+ ...|+.||..++|.| +.+.+.+++...+..+.+++.
T Consensus 155 ~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~i~~~i~~~ic 196 (200)
T 1v7p_C 155 DTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIF 196 (200)
T ss_dssp CCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhCCccHhcEEEcCCHHHHHHHHHHHHhhhc
Confidence 5 567999999998865 678889999988888877765
No 16
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.74 E-value=5.8e-19 Score=174.14 Aligned_cols=166 Identities=14% Similarity=0.156 Sum_probs=126.3
Q ss_pred CceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCC-CCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCCC
Q 004349 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP-GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS 404 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~-~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~Gg 404 (759)
+.|++||||.||||.+.+++.+|+++..+++.|.+ +++|+|+.|+++++...+.....+.+++..+++.+. ...|+
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~~~~i~---~~~g~ 78 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVK---HMLLL 78 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCC---CCCBC
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCcccCCHHHHHHHHHhcc---cCCCC
Confidence 57999999999999988999999999999999965 459999999999987766543323335566666554 23589
Q ss_pred CchHHHHHHHHHH-Hhc----CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcC----HHHHH
Q 004349 405 TNICAPLTKAVEM-LTN----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN----HYFLR 475 (759)
Q Consensus 405 T~i~~aL~~A~~~-l~~----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n----~~lL~ 475 (759)
|+++.||+.|.+. +.. +++.++.|||+|||..++..... . ..+++||+||+|...+ ...|+
T Consensus 79 T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~~-------~---~~~i~i~~igvG~~~~~~~~~~~L~ 148 (179)
T 1mjn_A 79 TNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNID-------A---AKDIIRYIIGIGKHFQTKESQETLH 148 (179)
T ss_dssp CCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCCG-------G---GTTSEEEEEEESGGGCSHHHHHTTG
T ss_pred ChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcchH-------H---HCCCEEEEEEccccccccccHHHHH
Confidence 9999999999964 432 23345789999999987653211 1 2358999999998877 37899
Q ss_pred HHHhhcCC-EEEEEcCCchHHHHHHHHHHh
Q 004349 476 MLAMISRG-YYGAAYDLDSIEIQMQKLFTR 504 (759)
Q Consensus 476 ~LA~~~gG-~~~~v~d~~~l~~~l~~~l~~ 504 (759)
.||..++| +++.+.+.+++...+.++.++
T Consensus 149 ~iA~~~~~~~~~~~~~~~~L~~i~~~i~~~ 178 (179)
T 1mjn_A 149 KFASKPASEFVKILDTFEKLKDLCTELQKK 178 (179)
T ss_dssp GGSCSCHHHHEEEESSGGGSCCHHHHHHHH
T ss_pred HHhCCccHhcEEEeCCHHHHHHHHHHHHhh
Confidence 99998877 467788888777766665443
No 17
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.73 E-value=3.6e-17 Score=160.99 Aligned_cols=145 Identities=19% Similarity=0.201 Sum_probs=104.2
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCC---CCeEEEEEECCceEEeecccccc--CHHHHHHHHHHHhccc
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELA--TKEAVERAHQWIGINF 399 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~--t~~~i~~a~~~I~~~~ 399 (759)
.+.+|+||||.||||.+.+++.+|+++..+++.|.. +++|+|+.|+++.....+..... +.+.+.++++.+.
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~~~~~~~~~~~i~~l~--- 92 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMP--- 92 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGGGSCHHHHHHHHHHCC---
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCCccCHHHHHHHHHhCC---
Confidence 478999999999999988999999999999999863 47999999999998777665433 5565655555432
Q ss_pred cCCCCCchHHHHHHHHHHHhc-----CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHH
Q 004349 400 IAGGSTNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL 474 (759)
Q Consensus 400 ~~~GgT~i~~aL~~A~~~l~~-----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL 474 (759)
..+|+|++..||+.|.+.+.. +++..+.|||+|||..++...+.+.++ .+++ .+++||+||+|..+|..+|
T Consensus 93 ~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~-~l~~---~gi~v~~igvG~~~~~~~l 168 (178)
T 2xgg_A 93 YKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAK-EIRE---LGGIVTVLAVGHYVAAALV 168 (178)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHH-HHHH---TTCEEEEEECC--------
T ss_pred CCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHH-HHHH---CCCEEEEEEcCCcCCHHHH
Confidence 367999999999999998632 224467999999999876644443333 3332 2589999999999999888
Q ss_pred HH
Q 004349 475 RM 476 (759)
Q Consensus 475 ~~ 476 (759)
+.
T Consensus 169 ~~ 170 (178)
T 2xgg_A 169 PR 170 (178)
T ss_dssp --
T ss_pred hc
Confidence 74
No 18
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.72 E-value=1.2e-17 Score=191.26 Aligned_cols=180 Identities=17% Similarity=0.192 Sum_probs=137.0
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC---CCCCeEEEEEECCceEEeecccc--ccCHHHHHHHHHHHhcc
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSME--LATKEAVERAHQWIGIN 398 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~~~~~~~~--~~t~~~i~~a~~~I~~~ 398 (759)
..+.|++||||.||||.+.+++.+|+++..+++.| +++++|+||.|+++++...+... ..+.+.+.++++.+...
T Consensus 7 ~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~ 86 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYK 86 (509)
T ss_dssp SSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCGG
T ss_pred CCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccCCCCCCHHHHHHHHHhcccc
Confidence 45789999999999999989999999999999988 78999999999999987766542 22556666666544321
Q ss_pred ccC-CCCCchHHHHHHHHHHHhcCC-----------CCCCEEEEEeCCCCCC---hHHHHHHHHHHHHc--CCCCCceEE
Q 004349 399 FIA-GGSTNICAPLTKAVEMLTNSR-----------GSIPIIFLVTDGAVED---ERQICDAMKSRLTN--GGSICPRIY 461 (759)
Q Consensus 399 ~~~-~GgT~i~~aL~~A~~~l~~~~-----------~~~~~IiLlTDG~~~~---~~~i~~~v~~~~~~--~~~~~~rI~ 461 (759)
... +|||++..||+.|++++.... ...+.|||||||..++ .....+.+++.+.. ....+++||
T Consensus 87 ~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 166 (509)
T 2odp_A 87 DHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIY 166 (509)
T ss_dssp GGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEEE
T ss_pred cCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceEEE
Confidence 111 499999999999999884311 2346899999998764 33344445443321 113468999
Q ss_pred EEEecCC-cCHHHHHHHHhhcCCE--EEEEcCCchHHHHHHHHHH
Q 004349 462 TFGIGSY-CNHYFLRMLAMISRGY--YGAAYDLDSIEIQMQKLFT 503 (759)
Q Consensus 462 t~GiG~~-~n~~lL~~LA~~~gG~--~~~v~d~~~l~~~l~~~l~ 503 (759)
+||+|.. .+...|+.||..++|. ++++.+.+++...+.+++.
T Consensus 167 ~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~~ 211 (509)
T 2odp_A 167 AIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLD 211 (509)
T ss_dssp EEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEE
T ss_pred EEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhhhc
Confidence 9999998 9999999999999998 8889888888777766643
No 19
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.71 E-value=1e-19 Score=180.54 Aligned_cols=174 Identities=18% Similarity=0.197 Sum_probs=124.1
Q ss_pred CCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC-CCCCeEEEEEECC-ceEEeeccccccCHHHHHHHHHHHhcccc
Q 004349 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL-DPGDSFNIVAFNG-ETYLFSTSMELATKEAVERAHQWIGINFI 400 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L-~~~d~f~Ii~F~~-~~~~~~~~~~~~t~~~i~~a~~~I~~~~~ 400 (759)
+..+.+++||||+||||.+.+++.+|+++..++..+ .++++|+|+.|++ ......+... +.. .+.++|. .+.
T Consensus 2 ~~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~--~~~---~~~~~i~-~l~ 75 (189)
T 2x31_A 2 EMSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPSR--SLT---QTKRQLQ-GLP 75 (189)
T ss_dssp CSSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTCS--CHH---HHHHHHH-HCC
T ss_pred CCCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCCC--CHH---HHHHHHh-cCC
Confidence 356899999999999999999999999999999888 8899999999997 4555544432 444 4455555 567
Q ss_pred CCCCCchHHHHHHHHHHHhcCC--CCCCEEEEEeCCCCCChHHH-------HHHHHHHHHcCCCCCceEEEEEecCCcCH
Q 004349 401 AGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQI-------CDAMKSRLTNGGSICPRIYTFGIGSYCNH 471 (759)
Q Consensus 401 ~~GgT~i~~aL~~A~~~l~~~~--~~~~~IiLlTDG~~~~~~~i-------~~~v~~~~~~~~~~~~rI~t~GiG~~~n~ 471 (759)
++|+|++..||+.|++.+.... +..+.|||+|||.++....- ...+.+........++++|+||+|.. +.
T Consensus 76 ~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~-~~ 154 (189)
T 2x31_A 76 GGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMR-PN 154 (189)
T ss_dssp CCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHS-SC
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCC-CH
Confidence 8999999999999999987643 34679999999998643110 00000001111223578999999987 77
Q ss_pred HHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHhh
Q 004349 472 YFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRG 505 (759)
Q Consensus 472 ~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~ 505 (759)
.+|+.||..++|.|+++.+. -.+.+.+++..+
T Consensus 155 ~~L~~iA~~~~G~~~~~~~~--~~~~~~~~~~~~ 186 (189)
T 2x31_A 155 PALVDLARTMDAHYIALPRA--TAHKMADVLGAA 186 (189)
T ss_dssp SSSCSTTTEEEESSTTTHHH--HHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCeEEECCCc--chHHHHHHHHHh
Confidence 89999999999998876432 233445555443
No 20
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.71 E-value=4.8e-17 Score=185.56 Aligned_cols=182 Identities=18% Similarity=0.237 Sum_probs=138.9
Q ss_pred CceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC---CCCCeEEEEEECCceEEeeccccc--cCHHHHHHHHHHHhccc-
Q 004349 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGINF- 399 (759)
Q Consensus 326 ~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~~~~~~~~~--~t~~~i~~a~~~I~~~~- 399 (759)
+.|++||||.|+||.+.+++.+|+++..+++.| +.+++|+|+.|+++++...+...+ .+.+.+.++++.+....
T Consensus 1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 80 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDH 80 (497)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCGGGS
T ss_pred CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccccccCHHHHHHHHHhCcCccc
Confidence 468999999999999999999999999999875 347899999999998776643222 35677777777664211
Q ss_pred cCCCCCchHHHHHHHHHHHhcC--------CCCCCEEEEEeCCCCCC---hHHHHHHHHHHH------HcCCCCCceEEE
Q 004349 400 IAGGSTNICAPLTKAVEMLTNS--------RGSIPIIFLVTDGAVED---ERQICDAMKSRL------TNGGSICPRIYT 462 (759)
Q Consensus 400 ~~~GgT~i~~aL~~A~~~l~~~--------~~~~~~IiLlTDG~~~~---~~~i~~~v~~~~------~~~~~~~~rI~t 462 (759)
..+|+|++..||+.|.+++... ++..+.|||+|||..+. .....+.+++.. .+....+++||+
T Consensus 81 ~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 160 (497)
T 1rrk_A 81 KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYV 160 (497)
T ss_dssp CCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEE
T ss_pred cccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCeeEEE
Confidence 2578999999999999998432 22456899999998763 334444444431 111223689999
Q ss_pred EEecCCcCHHHHHHHHhhcCC--EEEEEcCCchHHHHHHHHHHhhhc
Q 004349 463 FGIGSYCNHYFLRMLAMISRG--YYGAAYDLDSIEIQMQKLFTRGFS 507 (759)
Q Consensus 463 ~GiG~~~n~~lL~~LA~~~gG--~~~~v~d~~~l~~~l~~~l~~~~~ 507 (759)
||+|...+...|+.||..++| .++.+.+.+++...+.+++++...
T Consensus 161 igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i~~~~~ 207 (497)
T 1rrk_A 161 FGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQS 207 (497)
T ss_dssp EECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGGG
T ss_pred ecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhcccCCCC
Confidence 999999999999999999999 899999888898888877766543
No 21
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.70 E-value=3.7e-17 Score=195.62 Aligned_cols=189 Identities=18% Similarity=0.227 Sum_probs=141.2
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC---CCCeEEEEEECCceEEeeccccc--cCHHHHHHHHHHHhcc
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGIN 398 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~--~t~~~i~~a~~~I~~~ 398 (759)
..+.||+||||.||||.+.+++.+|+++..+++.|. .++||+||.|++++....+.... .+.+.+.++++.+...
T Consensus 241 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~ 320 (741)
T 3hrz_D 241 SGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYE 320 (741)
T ss_dssp TCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCCGG
T ss_pred CCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecccCCcCHHHHHHHHHhcccc
Confidence 457899999999999999999999999999998875 46899999999998877765431 2444444444433210
Q ss_pred c-cCCCCCchHHHHHHHHHHHhcC--------CCCCCEEEEEeCCCCCC---hHHHHHHHHHHH------HcCCCCCceE
Q 004349 399 F-IAGGSTNICAPLTKAVEMLTNS--------RGSIPIIFLVTDGAVED---ERQICDAMKSRL------TNGGSICPRI 460 (759)
Q Consensus 399 ~-~~~GgT~i~~aL~~A~~~l~~~--------~~~~~~IiLlTDG~~~~---~~~i~~~v~~~~------~~~~~~~~rI 460 (759)
. ..+|||++..||+.|++.+... .+..+.|||||||..+. .....+.+++.. ......+++|
T Consensus 321 ~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~i 400 (741)
T 3hrz_D 321 DHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDV 400 (741)
T ss_dssp GGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEE
T ss_pred cccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCeeE
Confidence 0 1789999999999999998321 12346899999998753 333334344321 1223456899
Q ss_pred EEEEecCCcCHHHHHHHHhhcCCE--EEEEcCCchHHHHHHHHHHhhhcceEee
Q 004349 461 YTFGIGSYCNHYFLRMLAMISRGY--YGAAYDLDSIEIQMQKLFTRGFSSVLAN 512 (759)
Q Consensus 461 ~t~GiG~~~n~~lL~~LA~~~gG~--~~~v~d~~~l~~~l~~~l~~~~~p~l~d 512 (759)
|+||+|.++|...|+.||..++|. ++.+.+.++|.+.+.++++++....+..
T Consensus 401 ~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~l~~~~~~~~~CG 454 (741)
T 3hrz_D 401 YVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCG 454 (741)
T ss_dssp EEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCTTSTT
T ss_pred EEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999994 8888998999999999888876544433
No 22
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.56 E-value=1.2e-15 Score=188.24 Aligned_cols=176 Identities=19% Similarity=0.220 Sum_probs=133.8
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCC-CeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCC
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPG-DSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~-d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~ 402 (759)
..+.||+||||.||||.+.+++.+|+++..+++.|.++ +||+||.|+++++...+.....+.+++.++++.+. ..+
T Consensus 128 ~~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~~~~~~~l~~ai~~i~---~~g 204 (1095)
T 3k6s_A 128 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVH---QLQ 204 (1095)
T ss_dssp CCCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHHHHSCSCGGGGTTTCC---CCC
T ss_pred CCCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcccCCHHHHHHHHhhhh---ccc
Confidence 45789999999999999999999999999999999865 79999999999988777654334445555554432 457
Q ss_pred CCCchHHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCC-ChHHHHHHHHHHHHcCCCCCceEEEEEecCC----cCHH
Q 004349 403 GSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGSY----CNHY 472 (759)
Q Consensus 403 GgT~i~~aL~~A~~~l~~~-----~~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~----~n~~ 472 (759)
|+|++..||+.|++.+... ++..+.|||+|||+.+ +.....+.+++. ++ .+++||+||+|.. .+..
T Consensus 205 G~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~-r~---~GI~i~aIGVG~~~~~~~d~~ 280 (1095)
T 3k6s_A 205 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMA-DA---AGIIRYAIGVGLAFQNRNSWK 280 (1095)
T ss_dssp SCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHH-HH---HCEEECCEEBSSGGGSTTSSH
T ss_pred CCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHH-HH---CCCEEEEEecccccccccCHH
Confidence 9999999999998865321 2345699999999984 333333333322 22 2589999999987 6889
Q ss_pred HHHHHHhhcCC-EEEEEcCCchHHHHHHHHHHhhh
Q 004349 473 FLRMLAMISRG-YYGAAYDLDSIEIQMQKLFTRGF 506 (759)
Q Consensus 473 lL~~LA~~~gG-~~~~v~d~~~l~~~l~~~l~~~~ 506 (759)
.|+.||..++| +++.+.+.+++...+.++.+++.
T Consensus 281 eL~~IAs~p~g~~vf~v~d~~~L~~i~~~L~~~Ic 315 (1095)
T 3k6s_A 281 ELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIF 315 (1095)
T ss_dssp HHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHHH
T ss_pred HHHHHHcCCCCceEEEcCCHHHHHHHHHHhhhhhh
Confidence 99999999876 67778888878776666666554
No 23
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.49 E-value=6.7e-13 Score=132.19 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=110.4
Q ss_pred ceEEEEEcCCCCCCC-----CChHHHHHHHHHHHHh---CCCCCeEEEEEECCc-eEEeeccccccCHHHHHHHHHHHhc
Q 004349 327 KDVIFIVDISGSMQG-----KPLEDTKNALAVALSK---LDPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGI 397 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g-----~~i~~aK~al~~~L~~---L~~~d~f~Ii~F~~~-~~~~~~~~~~~t~~~i~~a~~~I~~ 397 (759)
..++|+||.|+||.. .+++.+|+++..++.. .+++|+++||.|+++ ++...+.+. +...+..+++
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~--d~~~i~~~L~---- 76 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTR--DYGKFLSAMH---- 76 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEES--CHHHHHHHHT----
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCC--CHHHHHHHHH----
Confidence 468999999999974 4789999998887654 368899999999985 777766543 5555555544
Q ss_pred cccCCCCCchHHHHHHHHHHHhcCCC---CCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCCc-CHHH
Q 004349 398 NFIAGGSTNICAPLTKAVEMLTNSRG---SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC-NHYF 473 (759)
Q Consensus 398 ~~~~~GgT~i~~aL~~A~~~l~~~~~---~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~-n~~l 473 (759)
.+...|+|++..||..|.+.++.... +.+.|||++|+...++.+..+.++.. ++ .+++|++||+|... |..
T Consensus 77 ~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~l-k~---~gi~v~~Ig~G~~~~~~~- 151 (192)
T 2x5n_A 77 DLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRM-KK---NNVAIDIIHIGELQNESA- 151 (192)
T ss_dssp TCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHH-HH---TTEEEEEEEESCC---CH-
T ss_pred cCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHH-HH---CCCEEEEEEeCCCCccHH-
Confidence 46778999999999999999987542 22346677666644455554444333 32 35899999999764 446
Q ss_pred HHHHHhhc----CCEEEEEcCCc
Q 004349 474 LRMLAMIS----RGYYGAAYDLD 492 (759)
Q Consensus 474 L~~LA~~~----gG~~~~v~d~~ 492 (759)
|+.+++.+ +.+|+.+.+..
T Consensus 152 l~~la~~~n~~~~s~~~~~~~~~ 174 (192)
T 2x5n_A 152 LQHFIDAANSSDSCHLVSIPPSP 174 (192)
T ss_dssp HHHHHHHHCSTTCCEEEEECCCS
T ss_pred HHHHHHhccCCCceEEEEecCcc
Confidence 99999983 34566666554
No 24
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=4.4e-13 Score=139.26 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCCCC-----CChHHHHHHHHHHHHh---CCCCCeEEEEEECCce-EEeeccccccCHHHHHHHHHHHhcc
Q 004349 328 DVIFIVDISGSMQG-----KPLEDTKNALAVALSK---LDPGDSFNIVAFNGET-YLFSTSMELATKEAVERAHQWIGIN 398 (759)
Q Consensus 328 dvvfVlD~SGSM~g-----~~i~~aK~al~~~L~~---L~~~d~f~Ii~F~~~~-~~~~~~~~~~t~~~i~~a~~~I~~~ 398 (759)
.+|||||.|+||.. .+++.+|+|+..+++. +.|.|+++||+|.+.. ..+.+.+ .+...+.. .|+ .
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT--~D~~~il~---aL~-~ 78 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFT--AEFGKILA---GLH-D 78 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEE--SCHHHHHH---HHT-T
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCc--chHHHHHH---Hhh-h
Confidence 38999999999975 4799999999988874 5689999999997764 5555543 35555444 454 6
Q ss_pred ccCCCCCchHHHHHHHHHHHhcCC--CCCCEEEEEeCCCCC-ChHHHHHHHHHHHHcCCCCCceEEEEEecC-CcCHHHH
Q 004349 399 FIAGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGS-YCNHYFL 474 (759)
Q Consensus 399 ~~~~GgT~i~~aL~~A~~~l~~~~--~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~-~~n~~lL 474 (759)
+.++|+|++..+|+.|+..++... .....||++|||..+ ++.++.+.+++..++ +++|++||+|. ..|...|
T Consensus 79 l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~----gI~v~vIgFG~~~~n~~kL 154 (268)
T 4b4t_W 79 TQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKN----NVAVDIINFGEIEQNTELL 154 (268)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHH----TEEEEEEEESSCCSSCCHH
T ss_pred cCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEEeCCCccchHHH
Confidence 789999999999999999997653 334578999999765 444555555544432 58999999995 5678899
Q ss_pred HHHHhhcCC
Q 004349 475 RMLAMISRG 483 (759)
Q Consensus 475 ~~LA~~~gG 483 (759)
+.+++..+|
T Consensus 155 e~l~~~~Ng 163 (268)
T 4b4t_W 155 DEFIAAVNN 163 (268)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhcC
Confidence 999887765
No 25
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=99.38 E-value=1.7e-12 Score=155.92 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=86.8
Q ss_pred CCCCceEEEEEcCCCCCCCCC------hHHHHHHHHHHHHhCC--CCCeEEEEEECCceEE------e---ec-------
Q 004349 323 KVFKKDVIFIVDISGSMQGKP------LEDTKNALAVALSKLD--PGDSFNIVAFNGETYL------F---ST------- 378 (759)
Q Consensus 323 ~~~~~dvvfVlD~SGSM~g~~------i~~aK~al~~~L~~L~--~~d~f~Ii~F~~~~~~------~---~~------- 378 (759)
...+.+|+||||.||||.+.+ ++.+|+++..+++.|. ++|||+||.|++++.. . ..
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n 300 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLN 300 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEEC
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccccccccccc
Confidence 467899999999999999864 7789999999998774 4899999999986532 0 00
Q ss_pred ------------------c---ccccCHHHHHHHHHHHhc---------cccCCCCCchHHHHHHHHHHHhc-C-CCCCC
Q 004349 379 ------------------S---MELATKEAVERAHQWIGI---------NFIAGGSTNICAPLTKAVEMLTN-S-RGSIP 426 (759)
Q Consensus 379 ------------------~---~~~~t~~~i~~a~~~I~~---------~~~~~GgT~i~~aL~~A~~~l~~-~-~~~~~ 426 (759)
. ....+.+++..+.+.|.. .+.+.|||++..||..|+++|.. . +...+
T Consensus 301 ~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~k 380 (893)
T 2ww8_A 301 DSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQK 380 (893)
T ss_dssp CCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEE
T ss_pred cccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCe
Confidence 0 001245666666666642 14558999999999999999974 2 35678
Q ss_pred EEEEEeCCCCC
Q 004349 427 IIFLVTDGAVE 437 (759)
Q Consensus 427 ~IiLlTDG~~~ 437 (759)
.|||||||.++
T Consensus 381 vIILLTDG~pt 391 (893)
T 2ww8_A 381 VIFHITDGVPT 391 (893)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEcCCCCC
Confidence 99999999975
No 26
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=99.19 E-value=4.7e-11 Score=137.43 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=90.5
Q ss_pred CCCceEEEEEcCCCCCCC----CChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccc
Q 004349 324 VFKKDVIFIVDISGSMQG----KPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g----~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~ 399 (759)
..+.+++|+||+||||.+ .++...+.++...+..+.++|+++|+.|++..... +... + .++.++++.+. .+
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~~-~~t~--~-~~l~~~l~~l~-~~ 440 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPC-PITV--N-MLLHEVVEKMS-DI 440 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEECC-SCCT--T-SCHHHHHHHHT-TC
T ss_pred CCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceEc-CCCC--c-ccHHHHHHHHh-cC
Confidence 467899999999999985 34555433344444455678999999999854322 2221 1 23788888886 33
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHcCCCCCceEEEEEecCC
Q 004349 400 IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSY 468 (759)
Q Consensus 400 ~~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~-~i~~~v~~~~~~~~~~~~rI~t~GiG~~ 468 (759)
.+|||++..+|..|++. ......|||+|||..+... ...+.+++...+.+ ..+++|+||+|+.
T Consensus 441 -~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~-~~v~l~~igig~~ 504 (538)
T 1yvr_A 441 -TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVEDVHPATALKQYREKMG-IPAKLIVCAMTSN 504 (538)
T ss_dssp -CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHT-CCCEEEEEECSSS
T ss_pred -CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhC-CCcEEEEEEecCC
Confidence 68999999999999875 2345799999999876431 22233322222212 3578899999975
No 27
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.06 E-value=4.2e-10 Score=130.15 Aligned_cols=155 Identities=13% Similarity=0.153 Sum_probs=108.3
Q ss_pred ceEEEEEcCCCCCCC------CChHHHHHHHHHHHHh---CCCCCeEEEEEECCceE--------------Eeecccccc
Q 004349 327 KDVIFIVDISGSMQG------KPLEDTKNALAVALSK---LDPGDSFNIVAFNGETY--------------LFSTSMELA 383 (759)
Q Consensus 327 ~dvvfVlD~SGSM~g------~~i~~aK~al~~~L~~---L~~~d~f~Ii~F~~~~~--------------~~~~~~~~~ 383 (759)
..++|+||+|+||.. .+++.+|+++..++++ .+++|+++||.|+++.. .+.+. ...
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l-~~~ 86 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHL-MLP 86 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEE-ECC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecC-CCC
Confidence 579999999999964 4899999999999984 68999999999998752 12222 123
Q ss_pred CHHHHHHHHHHHhccccCC-CCCchHHHHHHHHHHHhcC--CC--CCCEEEEEeCCCCCC-hHHHHHHHHHHHHcCCCCC
Q 004349 384 TKEAVERAHQWIGINFIAG-GSTNICAPLTKAVEMLTNS--RG--SIPIIFLVTDGAVED-ERQICDAMKSRLTNGGSIC 457 (759)
Q Consensus 384 t~~~i~~a~~~I~~~~~~~-GgT~i~~aL~~A~~~l~~~--~~--~~~~IiLlTDG~~~~-~~~i~~~v~~~~~~~~~~~ 457 (759)
+...+ +.|...+..+ ++|++..||..|++++... .. ..+.|||+|||.... .......+ +.+.+ .+
T Consensus 87 ~~~~l----~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a-~~l~~---~g 158 (565)
T 1jey_B 87 DFDLL----EDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIII-HSLKK---CD 158 (565)
T ss_dssp CHHHH----HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHH-HHHHH---TT
T ss_pred CHHHH----HHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHH-HHHHh---cC
Confidence 44433 3343224444 7999999999999999764 22 347999999998642 22233333 33332 35
Q ss_pred ceEE-EEEecCC--------------------------------cCHHHHHHHHhhcCC-----EEEEEcC
Q 004349 458 PRIY-TFGIGSY--------------------------------CNHYFLRMLAMISRG-----YYGAAYD 490 (759)
Q Consensus 458 ~rI~-t~GiG~~--------------------------------~n~~lL~~LA~~~gG-----~~~~v~d 490 (759)
++|+ +||+|.. .|..+|+.||..++| .++.+.+
T Consensus 159 I~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~ 229 (565)
T 1jey_B 159 ISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSE 229 (565)
T ss_dssp EEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHH
T ss_pred cEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHH
Confidence 8999 8888743 134569999999999 7776543
No 28
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.91 E-value=1.7e-09 Score=124.04 Aligned_cols=134 Identities=18% Similarity=0.200 Sum_probs=86.8
Q ss_pred CCCceEEEEEcCCCCCCC-C-----ChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhc
Q 004349 324 VFKKDVIFIVDISGSMQG-K-----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGI 397 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g-~-----~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~ 397 (759)
..+.++++++|+||||.+ . ++..+..|....+-.+..+|+++|+.|++..... +.. ....+.++++.+.
T Consensus 360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~~~-~~~---~~~~l~~~l~~l~- 434 (535)
T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPL-GIT---PRDTLESAMQKAQ- 434 (535)
T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEEEC-CCC---TTCCHHHHHHHTC-
T ss_pred CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcceEc-CCC---cchhHHHHHHHHh-
Confidence 457899999999999986 2 2343333433334445578899999999865432 221 1245667777775
Q ss_pred cccCCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHcCCCCCceEEEEEecCC
Q 004349 398 NFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSY 468 (759)
Q Consensus 398 ~~~~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~-~i~~~v~~~~~~~~~~~~rI~t~GiG~~ 468 (759)
. ..+|||++..+|+.+.+. ......|||+|||+.+... ...+.++...... ..++++++||+|..
T Consensus 435 ~-~~~ggTdi~~~l~~a~~~----~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~-~~~~klv~i~l~~~ 500 (535)
T 2nvo_A 435 S-VSFGGTDCAQPILWAAQE----RLDVDTFVVYTDNETWAGQVHPTVALDQYAQKM-GRAPKLIVVGLTAT 500 (535)
T ss_dssp C-SSBCCCCTTHHHHHHHHT----TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHH-SCCCEEEEEETTCS
T ss_pred h-CCCCCccHHHHHHHHHHh----cCCCCEEEEEeCCCccCCCCCHHHHHHHHHHhh-CCCCeEEEEeccCC
Confidence 2 237999999999888653 2345789999999875421 2223333332221 23589999999864
No 29
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.74 E-value=6.1e-09 Score=105.69 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=69.0
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC---CCCeEEEEEECCce----EEeeccccccCHHHHHHHHHHHh
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGET----YLFSTSMELATKEAVERAHQWIG 396 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~----~~~~~~~~~~t~~~i~~a~~~I~ 396 (759)
..+.+++||||+||||.+ +|+.+|+++..++.++. ..++|+||.|+++. ..+.+++... .+.. .+.
T Consensus 132 ~~~~~vvfLVDtSgSM~~-kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~---~~~~---~l~ 204 (242)
T 3rag_A 132 EVALHLVVCLDTSASMRD-KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV---NVAA---LEA 204 (242)
T ss_dssp HSCEEEEEEEECSGGGTT-THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC---CHHH---HHH
T ss_pred cCCCCEEEEEECcccHHH-HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH---HHHH---HHh
Confidence 367899999999999984 99999999999998865 46899999999975 2222333211 2333 333
Q ss_pred ccccCCCCCchHHHHHHHHHHHhc
Q 004349 397 INFIAGGSTNICAPLTKAVEMLTN 420 (759)
Q Consensus 397 ~~~~~~GgT~i~~aL~~A~~~l~~ 420 (759)
.+.++|+|.++.||+.|++++..
T Consensus 205 -~L~agG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 205 -ELVARGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp -HCCCCSCCCHHHHHHHHHHHHHH
T ss_pred -hCCCCCCCcHHHHHHHHHHHHHH
Confidence 56789999999999999998853
No 30
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=98.68 E-value=9.8e-08 Score=111.14 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=94.3
Q ss_pred Cce-EEEEEcCCCCCCCC-------ChHHHHHHHHHHHHh---CCCCCeEEEEEECCceE----------EeeccccccC
Q 004349 326 KKD-VIFIVDISGSMQGK-------PLEDTKNALAVALSK---LDPGDSFNIVAFNGETY----------LFSTSMELAT 384 (759)
Q Consensus 326 ~~d-vvfVlD~SGSM~g~-------~i~~aK~al~~~L~~---L~~~d~f~Ii~F~~~~~----------~~~~~~~~~t 384 (759)
.++ ++|+||+|+||... +++.+++.+..++++ -.++|+++||.|+++.. .+.+.. ..+
T Consensus 34 ~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~-~~~ 112 (609)
T 1jey_A 34 GRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELD-NPG 112 (609)
T ss_dssp CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEE-CCC
T ss_pred CceEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCC-CCC
Confidence 344 99999999999752 699999999999986 36789999999999872 333332 235
Q ss_pred HHHHHHHHHHHh--------ccccCCCCCchHHHHHHHHHHHhcCCC--CCCEEEEEeCCCCCChH------HHHHHHHH
Q 004349 385 KEAVERAHQWIG--------INFIAGGSTNICAPLTKAVEMLTNSRG--SIPIIFLVTDGAVEDER------QICDAMKS 448 (759)
Q Consensus 385 ~~~i~~a~~~I~--------~~~~~~GgT~i~~aL~~A~~~l~~~~~--~~~~IiLlTDG~~~~~~------~i~~~v~~ 448 (759)
.+.++...+.+. .......+|++..||..|.+++..... ..+.|||||||...... .... +.+
T Consensus 113 ~~~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~-~a~ 191 (609)
T 1jey_A 113 AKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRART-KAG 191 (609)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHH-HHH
Confidence 554444333221 001224689999999999999986532 36799999999863221 2222 222
Q ss_pred HHHcCCCCCceEEEEEecCC
Q 004349 449 RLTNGGSICPRIYTFGIGSY 468 (759)
Q Consensus 449 ~~~~~~~~~~rI~t~GiG~~ 468 (759)
.+.. .+++|++||+|..
T Consensus 192 ~l~~---~gI~i~~igig~~ 208 (609)
T 1jey_A 192 DLRD---TGIFLDLMHLKKP 208 (609)
T ss_dssp HHHH---HTEEEEEEEBCCT
T ss_pred HHHh---cCcEEEEEecCCC
Confidence 2322 3589999999965
No 31
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=98.34 E-value=0.00015 Score=86.74 Aligned_cols=299 Identities=11% Similarity=0.086 Sum_probs=166.2
Q ss_pred EecCCCcccCCCCCceEEEEEcCCCCCCCC-ChHHHHHHHHHHHHhCCC---CCeEEEEEECCceEEee--cccc-----
Q 004349 313 YLLPGTAKSRKVFKKDVIFIVDISGSMQGK-PLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFS--TSME----- 381 (759)
Q Consensus 313 ~~~P~~~~~~~~~~~dvvfVlD~SGSM~g~-~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~--~~~~----- 381 (759)
++.|..-....+.|.-++||||+|.++-.. -++.+++++...|+.|++ +.+|+||+|++..+.+. +...
T Consensus 174 y~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~ 253 (810)
T 1pcx_A 174 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEES 253 (810)
T ss_dssp EECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC----
T ss_pred EEcCchhccCCCCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCcccc
Confidence 444543322345678899999999877322 377899999999999986 57999999999976541 1000
Q ss_pred ---------------------------ccCHHHHHHHHHHHhcccc--CCCCCchHHHHHHHHHHHhcCCCCCCEEEEEe
Q 004349 382 ---------------------------LATKEAVERAHQWIGINFI--AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVT 432 (759)
Q Consensus 382 ---------------------------~~t~~~i~~a~~~I~~~~~--~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlT 432 (759)
......+..+++.|..... ..+.+.++.||+.|..+++... -.|++++
T Consensus 254 ~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~G---GrI~~F~ 330 (810)
T 1pcx_A 254 ADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG---GKIIVVS 330 (810)
T ss_dssp ---CEEECCCCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTC---EEEEEEE
T ss_pred ccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhcC---CEEEEEe
Confidence 0124566777777764322 3578899999999999997532 3688899
Q ss_pred CCCCCChH----------------H----------HHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEE
Q 004349 433 DGAVEDER----------------Q----------ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYG 486 (759)
Q Consensus 433 DG~~~~~~----------------~----------i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~ 486 (759)
+|.++.+. + ..+.+.....+. ...+.+|.++ +..++-.-|..+++.+||..+
T Consensus 331 sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~-gi~VDlF~~s-~~~~dla~l~~l~~~TGG~v~ 408 (810)
T 1pcx_A 331 GTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKV-QITVDLFLAS-EDYMDVASLSNLSRFTAGQTH 408 (810)
T ss_dssp SSCCCSSTTCCCC--------------------CCHHHHHHHHHHHT-TEEEEEEEEE-SSCCCHHHHHHHHHTTTCCEE
T ss_pred cCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHHHHHHHC-CeEEEEEEcc-CCccChHHHHHHHhcCCcEEE
Confidence 98764210 0 011222222221 2344555554 346788899999999999988
Q ss_pred EEcCCch--HHH--HHHHHHHh-hhcceEeeE--EEEecCCCcceeecc---------CCCCCCCCCCcEEEEEEEcCCC
Q 004349 487 AAYDLDS--IEI--QMQKLFTR-GFSSVLANI--AIDTLKDLDEFEMYP---------SRIPDLSSESPLIVSGRYQGKF 550 (759)
Q Consensus 487 ~v~d~~~--l~~--~l~~~l~~-~~~p~l~di--~l~~~~~~~~~ev~P---------~~i~~lf~g~~liv~Gr~~g~~ 550 (759)
+..+... ..+ ++.+-+.+ +..+...+. ++....+......+- -.++.+-....+.+.-.+.++.
T Consensus 409 ~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l 488 (810)
T 1pcx_A 409 FYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESI 488 (810)
T ss_dssp EEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCC
T ss_pred EcCCCcchhhHHHHHHHHHHHHHhhhhcceeEEEEEEcCCCeEEEEeecCccccCcCceEeecCCCCCEEEEEEEeccCC
Confidence 8766532 111 22222222 222222222 333222221111110 1246667777888877776654
Q ss_pred CC-eEE----EEEEeCC-cc---cEEEEEeeccc--------cCCchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHhh
Q 004349 551 PD-TLK----AKGFLGD-LS---NFVVELKLQLA--------KDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVSKMSV 613 (759)
Q Consensus 551 ~~-~v~----l~G~~~~-~~---~~~~~l~~~~~--------~~~~l~~lwA~~~I~~L~~~~~~~~~~~~k~eIv~LS~ 613 (759)
+. .+. +..+..+ ++ ..++.+++... +-..+..+.||..+..........-.+.+.+.++++-.
T Consensus 489 ~~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~il~ 568 (810)
T 1pcx_A 489 MADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILA 568 (810)
T ss_dssp CSSEEEEEEEEEEECTTSCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEcCCCCEEEEEEecCccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 32 121 2222222 21 22333333221 11234556677666655433222234556667777766
Q ss_pred hhC
Q 004349 614 QTG 616 (759)
Q Consensus 614 ~y~ 616 (759)
.|+
T Consensus 569 ~Yr 571 (810)
T 1pcx_A 569 TYK 571 (810)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 32
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.25 E-value=0.00016 Score=86.10 Aligned_cols=176 Identities=13% Similarity=0.144 Sum_probs=113.0
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEee--ccc---------------------
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFS--TSM--------------------- 380 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~--~~~--------------------- 380 (759)
+.|.-++||||+|.+. ..++.+++++...|+.|+++.+|+||+|++.++.+. ...
T Consensus 130 p~pp~~vFvIDvS~~a--~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~m 207 (769)
T 2nut_A 130 QMPLIFLYVVDTCMED--EDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEM 207 (769)
T ss_dssp CCCCEEEEEEECCSCH--HHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHH
T ss_pred CCCCEEEEEEECCccH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHH
Confidence 4567899999999874 468899999999999999999999999999876532 100
Q ss_pred ccc-----------------------------CHHHHHHHHHHHhccc-----cCCCCCchHHHHHHHHHHHhcC-CCCC
Q 004349 381 ELA-----------------------------TKEAVERAHQWIGINF-----IAGGSTNICAPLTKAVEMLTNS-RGSI 425 (759)
Q Consensus 381 ~~~-----------------------------t~~~i~~a~~~I~~~~-----~~~GgT~i~~aL~~A~~~l~~~-~~~~ 425 (759)
... ....+..+++.|.... .....+.++.||+.|..++... ++..
T Consensus 208 l~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~G 287 (769)
T 2nut_A 208 LGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTG 287 (769)
T ss_dssp HC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred hCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCC
Confidence 000 0123444555554201 1256789999999999999732 1223
Q ss_pred CEEEEEeCCCCCCh--------------------H----------HHHHHHHHHHHcCCCCCceEEEEEec-CCcCHHHH
Q 004349 426 PIIFLVTDGAVEDE--------------------R----------QICDAMKSRLTNGGSICPRIYTFGIG-SYCNHYFL 474 (759)
Q Consensus 426 ~~IiLlTDG~~~~~--------------------~----------~i~~~v~~~~~~~~~~~~rI~t~GiG-~~~n~~lL 474 (759)
-.|++++.|.++.+ . ...+.+.....+. ++.|..|.++ ..++-.-|
T Consensus 288 GrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~---gi~VDlF~~~~~~vdla~l 364 (769)
T 2nut_A 288 ARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATT---GHVIDIYACALDQTGLLEM 364 (769)
T ss_dssp CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHH---TCEEEEEEECSSCCCHHHH
T ss_pred cEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHC---CeEEEEEeccCCccChHHH
Confidence 46888888875310 0 0012222222221 2445555554 45788999
Q ss_pred HHHHhhcCCEEEEEcCCc--hHHHHHHHHHHh
Q 004349 475 RMLAMISRGYYGAAYDLD--SIEIQMQKLFTR 504 (759)
Q Consensus 475 ~~LA~~~gG~~~~v~d~~--~l~~~l~~~l~~ 504 (759)
..|++.+||..++..+.. .+.+.+.+.+.+
T Consensus 365 ~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~~ 396 (769)
T 2nut_A 365 KCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTK 396 (769)
T ss_dssp THHHHHSSCCEEEESCSSSHHHHHHHHHTTCB
T ss_pred HHHhhcCCceEEEcCCCchhhHHHHHHHHHhh
Confidence 999999999998887654 344455555544
No 33
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=98.14 E-value=0.00036 Score=84.27 Aligned_cols=299 Identities=11% Similarity=0.085 Sum_probs=164.0
Q ss_pred EecCCCcccCCCCCceEEEEEcCCCCCCCC-ChHHHHHHHHHHHHhCCC---CCeEEEEEECCceEEee--cc-------
Q 004349 313 YLLPGTAKSRKVFKKDVIFIVDISGSMQGK-PLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFS--TS------- 379 (759)
Q Consensus 313 ~~~P~~~~~~~~~~~dvvfVlD~SGSM~g~-~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~--~~------- 379 (759)
++.|..-......|.-++||||+|.+.-.. -++.+++++...|+.|++ +.+|+||+|++..+.+. ..
T Consensus 290 yi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~ 369 (926)
T 1m2v_B 290 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEES 369 (926)
T ss_dssp EECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC-------
T ss_pred EEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCccc
Confidence 445543322345677899999999876322 377899999999999986 46999999999876541 10
Q ss_pred -----------------------cc--ccCHHHHHHHHHHHhcccc--CCCCCchHHHHHHHHHHHhcCCCCCCEEEEEe
Q 004349 380 -----------------------ME--LATKEAVERAHQWIGINFI--AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVT 432 (759)
Q Consensus 380 -----------------------~~--~~t~~~i~~a~~~I~~~~~--~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlT 432 (759)
.. ......+..+++.|..... ....+.++.||+.|..+++... -.|++++
T Consensus 370 ~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~G---GrI~~F~ 446 (926)
T 1m2v_B 370 ADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG---GKIIVVS 446 (926)
T ss_dssp --CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTTC---EEEEEEE
T ss_pred ccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhhC---CEEEEEe
Confidence 00 1125677778887764332 3577889999999999997532 3678888
Q ss_pred CCCCCCh-----------------HH---------HHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEE
Q 004349 433 DGAVEDE-----------------RQ---------ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYG 486 (759)
Q Consensus 433 DG~~~~~-----------------~~---------i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~ 486 (759)
.|.++.+ +. ..+.+.....+. ...+.||.++ ...++-.-|..|++.+||..+
T Consensus 447 sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~-gisVDlF~~s-~~~vdla~l~~l~~~TGG~v~ 524 (926)
T 1m2v_B 447 GTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKV-QITVDLFLAS-EDYMDVASLSNLSRFTAGQTH 524 (926)
T ss_dssp SSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHH-TEEEEEEEEE-SSCCCHHHHHHHHHTTTCCEE
T ss_pred cCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHHc-CeEEEEEEcc-CCCcChHHHHHHHhcCCceEE
Confidence 8775310 00 012222222211 2345566555 346788999999999999988
Q ss_pred EEcCCch--HHH--HHHHHHH-hhhcceEeeEE--EEecCCCcceeecc---------CCCCCCCCCCcEEEEEEEcCCC
Q 004349 487 AAYDLDS--IEI--QMQKLFT-RGFSSVLANIA--IDTLKDLDEFEMYP---------SRIPDLSSESPLIVSGRYQGKF 550 (759)
Q Consensus 487 ~v~d~~~--l~~--~l~~~l~-~~~~p~l~di~--l~~~~~~~~~ev~P---------~~i~~lf~g~~liv~Gr~~g~~ 550 (759)
+..+... ..+ ++.+-+. .+..+...+.. |....+......+- -.++.+.....+.+.-.+..+.
T Consensus 525 ~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~s~~~~l~~l~~d~s~av~f~~~~~l 604 (926)
T 1m2v_B 525 FYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESI 604 (926)
T ss_dssp EEESCCTTSHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSBCSSTTEEEEEEECSSCCEEEEEEECSBC
T ss_pred EcCCCcchhhhHHHHHHHHHHHHhhhhhceeEEEEEEeCCCcEEEEeecCccccCcCceEeeccCCCCEEEEEEEeccCC
Confidence 8766532 111 2222222 22223333333 33222222111111 1134455566666666665543
Q ss_pred CC-eE----EEEEEeCC-cc---cEEEEEeeccc--------cCCchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHhh
Q 004349 551 PD-TL----KAKGFLGD-LS---NFVVELKLQLA--------KDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVSKMSV 613 (759)
Q Consensus 551 ~~-~v----~l~G~~~~-~~---~~~~~l~~~~~--------~~~~l~~lwA~~~I~~L~~~~~~~~~~~~k~eIv~LS~ 613 (759)
+. .+ .+..+..+ ++ ..++.+++... +-..+..+.||..+...+...+..-.+.+.+.++++-.
T Consensus 605 ~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~l~~v~~s~Dqea~~~llar~av~~~~~~~~~d~r~~L~~~li~il~ 684 (926)
T 1m2v_B 605 MADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILA 684 (926)
T ss_dssp CSSEEEEEEEEEEEETTTEEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEcCCCCEEEEEEeecccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 22 11 12222222 21 22333333221 11234556677766655443222334556677777766
Q ss_pred hhC
Q 004349 614 QTG 616 (759)
Q Consensus 614 ~y~ 616 (759)
.|+
T Consensus 685 ~Yr 687 (926)
T 1m2v_B 685 TYK 687 (926)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 34
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=98.00 E-value=0.0012 Score=78.55 Aligned_cols=176 Identities=13% Similarity=0.140 Sum_probs=110.6
Q ss_pred CCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeeccc------------cccC-------
Q 004349 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSM------------ELAT------- 384 (759)
Q Consensus 324 ~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~------------~~~t------- 384 (759)
+.|.-++||||+|.+.. .++.+++++...|+.|+++.+|+||+|++..+.+.-.. ..++
T Consensus 119 ~~pp~~vFvIDvs~~~~--~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~ 196 (768)
T 1m2o_A 119 TVPPIFFFVVDLTSETE--NLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEM 196 (768)
T ss_dssp CSCCEEEEEEECCSCHH--HHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHH
T ss_pred CCCCEEEEEEECCcCHH--HHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHH
Confidence 46778999999998863 68899999999999999999999999999876532100 0000
Q ss_pred --------------------------------------HHHHHHHHHHHhcc---cc--CCCCCchHHHHHHHHHHHhcC
Q 004349 385 --------------------------------------KEAVERAHQWIGIN---FI--AGGSTNICAPLTKAVEMLTNS 421 (759)
Q Consensus 385 --------------------------------------~~~i~~a~~~I~~~---~~--~~GgT~i~~aL~~A~~~l~~~ 421 (759)
...+..+++.|... .. ....+.++.||+.|..++...
T Consensus 197 l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~ 276 (768)
T 1m2o_A 197 LTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGC 276 (768)
T ss_dssp HHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHH
T ss_pred HhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhc
Confidence 12244444444320 11 135668999999999999742
Q ss_pred -CCCCCEEEEEeCCCCCC---------h-------HH--------------HHHHHHHHHHcCCCCCceEEEEEecCCcC
Q 004349 422 -RGSIPIIFLVTDGAVED---------E-------RQ--------------ICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (759)
Q Consensus 422 -~~~~~~IiLlTDG~~~~---------~-------~~--------------i~~~v~~~~~~~~~~~~rI~t~GiG~~~n 470 (759)
++..-.|++++.|.++. . .+ ..+.+.....+. ...+.+|.++ ...++
T Consensus 277 ~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~-gi~VDlF~~~-~~~~d 354 (768)
T 1m2o_A 277 YKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAAN-GHTVDIFAGC-YDQIG 354 (768)
T ss_dssp CTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH-TCEEEEEEEC-SSCCS
T ss_pred cCCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHHC-CeEEEEEEcc-CCccC
Confidence 12234688889887641 0 00 011122222111 2334455554 34578
Q ss_pred HHHHHHHHhhcCCEEEEEcCCc--hHHHHHHHHHH
Q 004349 471 HYFLRMLAMISRGYYGAAYDLD--SIEIQMQKLFT 503 (759)
Q Consensus 471 ~~lL~~LA~~~gG~~~~v~d~~--~l~~~l~~~l~ 503 (759)
-.-|..+++.+||..++..+.. .+.+.+.+.+.
T Consensus 355 la~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r~l~ 389 (768)
T 1m2o_A 355 MSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFA 389 (768)
T ss_dssp HHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTC
T ss_pred hHHHhhHhhcCCceEEEcCCCchHHHHHHHHHHHh
Confidence 8999999999999988877654 34444444444
No 35
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=97.93 E-value=6.1e-05 Score=75.26 Aligned_cols=104 Identities=17% Similarity=0.201 Sum_probs=69.6
Q ss_pred CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC---CCCCeEEEEEECCce-EEeeccccccCHHHHHHHHHHHhcccc
Q 004349 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGET-YLFSTSMELATKEAVERAHQWIGINFI 400 (759)
Q Consensus 325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~-~~~~~~~~~~t~~~i~~a~~~I~~~~~ 400 (759)
.|.|++||+|.|+||.. .++.+|+.+..+.+.| ..+-||++..|.+.. ....+++ .+...+.++++ ...
T Consensus 2 ~pvDl~fl~D~S~SM~~-di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT--~d~~~F~~~v~----~~~ 74 (212)
T 2iue_A 2 NSVDLYFLMGLSGSAQG-HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLT--ADSSQFQRELR----KQL 74 (212)
T ss_dssp CCEEEEEEEECCGGGTT-THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEE--SCHHHHHHHHH----TCC
T ss_pred CceEEEEEEeCCCcchh-HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcC--CCHHHHHHHHh----hcc
Confidence 47899999999999986 6899999888776554 456699999998873 2223332 24455555554 345
Q ss_pred CCCCCc----hHHHHHHHH---HHHhcCCCCCCEEEEEeCCCC
Q 004349 401 AGGSTN----ICAPLTKAV---EMLTNSRGSIPIIFLVTDGAV 436 (759)
Q Consensus 401 ~~GgT~----i~~aL~~A~---~~l~~~~~~~~~IiLlTDG~~ 436 (759)
..||-+ -..||..|+ +.+.-++ ..+.|||+||+.+
T Consensus 75 vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~ 116 (212)
T 2iue_A 75 VSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDF 116 (212)
T ss_dssp CCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCB
T ss_pred ccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCc
Confidence 555432 244555555 2333344 6789999999986
No 36
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=97.92 E-value=0.0028 Score=75.13 Aligned_cols=288 Identities=10% Similarity=0.100 Sum_probs=160.0
Q ss_pred CCCCceEEEEEcCCC-CCCCCChHHHHHHHHHHHHhCCCCC--eEEEEEECCceEEee--cc------------------
Q 004349 323 KVFKKDVIFIVDISG-SMQGKPLEDTKNALAVALSKLDPGD--SFNIVAFNGETYLFS--TS------------------ 379 (759)
Q Consensus 323 ~~~~~dvvfVlD~SG-SM~g~~i~~aK~al~~~L~~L~~~d--~f~Ii~F~~~~~~~~--~~------------------ 379 (759)
.+.|--++||||+|- ++...-++.+++++...|+.|+++. +|+||+|++..+.+. +.
T Consensus 157 ~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P 236 (751)
T 3eh1_A 157 PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLP 236 (751)
T ss_dssp SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSC
T ss_pred CCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCC
Confidence 456788999999984 2333357888999999999998765 899999999865321 10
Q ss_pred -----cc--ccCHHHHHHHHHHHhccccC--CCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCh-----------
Q 004349 380 -----ME--LATKEAVERAHQWIGINFIA--GGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDE----------- 439 (759)
Q Consensus 380 -----~~--~~t~~~i~~a~~~I~~~~~~--~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~----------- 439 (759)
.. ......++.+++.|...... ...+.++.||+.|..+++... -.|++++.|.++.+
T Consensus 237 ~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~G---GrI~~F~sg~pt~GpG~l~~r~~~~ 313 (751)
T 3eh1_A 237 TPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPTG---GRVSVFQTQLPSLGAGLLQSREDPN 313 (751)
T ss_dssp CGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTTC---EEEEEEECSCCCSSTTCCCCCCCSC
T ss_pred ChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcCC---CEEEEEecCCCCCCCCccccccccc
Confidence 00 12356788888877633222 345788999999999997532 35777777765311
Q ss_pred --------------HHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCCc---------hHHH
Q 004349 440 --------------RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLD---------SIEI 496 (759)
Q Consensus 440 --------------~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~~---------~l~~ 496 (759)
....+.+.....+. ...+.+|.++ ...++-.-|..+++.+||..++..... .+..
T Consensus 314 ~~~~~ke~~~~~~a~~fY~~la~~~~~~-~i~VDlF~~s-~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~ 391 (751)
T 3eh1_A 314 QRSSTKVVQHLGPATDFYKKLALDCSGQ-QTAVDLFLLS-SQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQK 391 (751)
T ss_dssp GGGGSSSCTTCSCSCSHHHHHHHHHHHT-TEEEEEEECC-SSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHH
T ss_pred cCCCchhhhhhcchHHHHHHHHHHHHhc-CceEEEEEcc-CcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHH
Confidence 01123333333222 2334444443 245788889999999999998876543 2233
Q ss_pred HHHHHHHhhhcceEee--EEEEecCCCcceeecc---------CCCCCCCCCCcEEEEEEEcCCCCC--eEE----EEEE
Q 004349 497 QMQKLFTRGFSSVLAN--IAIDTLKDLDEFEMYP---------SRIPDLSSESPLIVSGRYQGKFPD--TLK----AKGF 559 (759)
Q Consensus 497 ~l~~~l~~~~~p~l~d--i~l~~~~~~~~~ev~P---------~~i~~lf~g~~liv~Gr~~g~~~~--~v~----l~G~ 559 (759)
.+.+.+. .+...+ +++....+......+- -.++.+-.+..+.+.-.+.++.+. .+. +..+
T Consensus 392 dl~r~l~---~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~allYT 468 (751)
T 3eh1_A 392 DLKRYLT---RKIGFEAVMRIRCTKGLSMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYT 468 (751)
T ss_dssp HHHHHHH---SCCEEEEEEEEEECTTEEEEEEESSSEECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEEEEE
T ss_pred HHHHHHh---hhhccceEEEEEecCCeEEEEeeCCeEeCCCCceEeccCCCCCEEEEEEEEcCCCCCCCceEEEEEEeee
Confidence 3333332 232222 2333222221111110 123445556677777677665432 221 1122
Q ss_pred eC-Ccc---cEEEEEeeccc--------cCCchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhCCC
Q 004349 560 LG-DLS---NFVVELKLQLA--------KDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVSKMSVQTGVL 618 (759)
Q Consensus 560 ~~-~~~---~~~~~l~~~~~--------~~~~l~~lwA~~~I~~L~~~~~~~~~~~~k~eIv~LS~~y~iv 618 (759)
.. ++. ..++.+++... +-..+..++||..+..........-.+.+.+.++++-.+|+--
T Consensus 469 ~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~~~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~~ 539 (751)
T 3eh1_A 469 SSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGST 539 (751)
T ss_dssp CTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEEEEecccccCCHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 221 22333333221 1123556677777665544322233456677788887777743
No 37
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=97.86 E-value=3.7e-05 Score=78.00 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=55.0
Q ss_pred CCCCEEEEEeCCCCCChHHHHHHHHHHHHcCCCCCceEEEEEecCC-----cCHHHHHHHHhhcCCEEEEEcCCchHHHH
Q 004349 423 GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY-----CNHYFLRMLAMISRGYYGAAYDLDSIEIQ 497 (759)
Q Consensus 423 ~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI~t~GiG~~-----~n~~lL~~LA~~~gG~~~~v~d~~~l~~~ 497 (759)
+..+.|||||||..+.+....+..+. +.+ .+++||+||+|+. .+...|+.||..+||.|+.+.. .++.+.
T Consensus 8 ~~~k~iillTDG~~~~g~~p~~aa~~-a~~---~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~-~~l~~~ 82 (242)
T 3rag_A 8 ATIRQILVITDGCSNIGPDPVEAARR-AHR---HGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP-ADISAT 82 (242)
T ss_dssp CCEEEEEEEESSCCCSSSCHHHHHHH-HHH---TTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG-GGHHHH
T ss_pred CCccEEEEEccCCCCCCCCHHHHHHH-HHH---CCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH-HHHHHH
Confidence 45689999999997543333333332 222 3589999999753 2358899999999999999854 677766
Q ss_pred HHHHHHhh
Q 004349 498 MQKLFTRG 505 (759)
Q Consensus 498 l~~~l~~~ 505 (759)
++.+.++.
T Consensus 83 ~~~~t~~~ 90 (242)
T 3rag_A 83 AQMMTHQT 90 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555554
No 38
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=97.75 E-value=0.00013 Score=85.47 Aligned_cols=188 Identities=14% Similarity=0.128 Sum_probs=108.8
Q ss_pred eEEEEecCCCcccCCCCCceEEEEEcCCCCCCCCChHHHHHHHHHHH---HhCCCCCeEEEEEECCceE-Eeec------
Q 004349 309 MFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVAL---SKLDPGDSFNIVAFNGETY-LFST------ 378 (759)
Q Consensus 309 ~f~l~~~P~~~~~~~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L---~~L~~~d~f~Ii~F~~~~~-~~~~------ 378 (759)
.|.+.+.+.. ..|.|++||+|.|+||.. .|+.+|+....++ +.+..+-||++.+|.+... .+..
T Consensus 99 ~f~~~~~~~~-----~~pvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~ 172 (690)
T 3fcs_B 99 NFSIQVRQVE-----DYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEA 172 (690)
T ss_dssp EEEEEEECCB-----TCCEEEEEEEECSGGGHH-HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTT
T ss_pred EEEEEEeccC-----CCCccEEEEecCCcchHH-HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhh
Confidence 4666666543 467999999999999985 6777777655554 4455677999999988532 1000
Q ss_pred ---------------cc----cccCHHHHHHHHHHHhccccCCCCCc----hHHHHHHHH---HHHhcCCCCCCEEEEEe
Q 004349 379 ---------------SM----ELATKEAVERAHQWIGINFIAGGSTN----ICAPLTKAV---EMLTNSRGSIPIIFLVT 432 (759)
Q Consensus 379 ---------------~~----~~~t~~~i~~a~~~I~~~~~~~GgT~----i~~aL~~A~---~~l~~~~~~~~~IiLlT 432 (759)
.. ... ..++.+..+.|+ .....|+-+ -.+||..|+ +.+.-+++..+.|||+|
T Consensus 173 ~~~pc~~~~~~c~~~f~f~~~l~l-t~~~~~f~~~v~-~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~T 250 (690)
T 3fcs_B 173 LENPCYDMKTTCLPMFGYKHVLTL-TDQVTRFNEEVK-KQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTT 250 (690)
T ss_dssp TTCTTSSSSSCCCCCCSEEEEEEE-ESCHHHHHHHHT-TCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEE
T ss_pred ccCCCcCCCCCCCCCccceeeccc-CCCHHHHHHHhh-ceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEEC
Confidence 00 000 123445555555 445555533 355666665 44544556678999999
Q ss_pred CCCCC---Ch------------------------HH----HHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhh-
Q 004349 433 DGAVE---DE------------------------RQ----ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI- 480 (759)
Q Consensus 433 DG~~~---~~------------------------~~----i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~- 480 (759)
|.... +. .. .+..+.+.+.+.+ + ..||++--+ .....+.|+..
T Consensus 251 Da~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~-i-~~ifavt~~---~~~~y~~l~~~i 325 (690)
T 3fcs_B 251 DAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN-I-NLIFAVTEN---VVNLYQNYSELI 325 (690)
T ss_dssp SSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTT-C-EEEEEEEGG---GHHHHHHHHHHS
T ss_pred CCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcC-C-eEEEEEeCC---chhhHHHHHhhc
Confidence 97642 10 00 1233444444332 1 346666322 33455566654
Q ss_pred cCCEEEEE-cCCchHHHHHHHHHHhhhcce
Q 004349 481 SRGYYGAA-YDLDSIEIQMQKLFTRGFSSV 509 (759)
Q Consensus 481 ~gG~~~~v-~d~~~l~~~l~~~l~~~~~p~ 509 (759)
+++....+ .|.+.+.+.+...+.++.+.+
T Consensus 326 ~~s~v~~l~~dSsni~~li~~~y~~i~s~v 355 (690)
T 3fcs_B 326 PGTTVGVLSMDSSNVLQLIVDAYGKIRSKV 355 (690)
T ss_dssp TTCEEEEECTTCTTHHHHHHHHHHHHTTCE
T ss_pred CCceeeeeccccHHHHHHHHHHHHhhhcce
Confidence 44444333 455678888888888887654
No 39
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=97.45 E-value=0.0012 Score=73.28 Aligned_cols=186 Identities=12% Similarity=0.103 Sum_probs=108.6
Q ss_pred eEEEEecCCCcccCCCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC---CCCCeEEEEEECCceE-Eee-------
Q 004349 309 MFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETY-LFS------- 377 (759)
Q Consensus 309 ~f~l~~~P~~~~~~~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~-~~~------- 377 (759)
.|.+.+.+.. ..|.|++||+|.|+||.. .++.+|+....+++.| ..+-|+++.+|-+... .|.
T Consensus 99 ~f~v~~~~~~-----~ypvDLy~LmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~ 172 (472)
T 3t3p_B 99 NFSIQVRQVE-----DYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEA 172 (472)
T ss_dssp EEEEEEECCS-----SCCEEEEEEEECSGGGHH-HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHH
T ss_pred EEEEEeecCC-----CCCceEEEEEccCcchHH-HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhh
Confidence 4555555543 478999999999999985 6777777766666554 4566999999987521 000
Q ss_pred --------------c------cccccCHHHHHHHHHHHhccccCCCCCc----hHHHHHHHH---HHHhcCCCCCCEEEE
Q 004349 378 --------------T------SMELATKEAVERAHQWIGINFIAGGSTN----ICAPLTKAV---EMLTNSRGSIPIIFL 430 (759)
Q Consensus 378 --------------~------~~~~~t~~~i~~a~~~I~~~~~~~GgT~----i~~aL~~A~---~~l~~~~~~~~~IiL 430 (759)
+ .....+.. +..+.|+ .....|+-+ -.+||..|+ +.+.-+++..+.|||
T Consensus 173 l~nPc~~~~~~c~p~f~fr~~l~LT~d~~---~F~~~V~-~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~ 248 (472)
T 3t3p_B 173 LENPCYDMKTTCLPMFGYKHVLTLTDQVT---RFNEEVK-KQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVF 248 (472)
T ss_dssp HHCTTTTTTSCCCCCCSEEEEEEEESCHH---HHHHHHH-HCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEE
T ss_pred hcCCCcccccCCCCCcceeEeeccCCCHH---HHHHHHh-hccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEE
Confidence 0 01112344 4444444 344445433 355666555 344444456789999
Q ss_pred EeCCCCC---C-----------------hH-----------HHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHh
Q 004349 431 VTDGAVE---D-----------------ER-----------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM 479 (759)
Q Consensus 431 lTDG~~~---~-----------------~~-----------~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~ 479 (759)
+||.... + .. ..+..+.+.+.+.+ -..||+|-- ......+.|+.
T Consensus 249 ~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~n--I~~IFAVt~---~~~~~Y~~L~~ 323 (472)
T 3t3p_B 249 TTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN--INLIFAVTE---NVVNLYQNYSE 323 (472)
T ss_dssp EESSCBCCTTGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTT--CEEEEEECG---GGHHHHHHHHH
T ss_pred ECCCCcCcCCCccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcC--ccEEEEEec---cchhHHHHHHH
Confidence 9997531 0 00 01333444443332 245777732 23456677777
Q ss_pred hcCCEEE-EE-cCCchHHHHHHHHHHhhhcce
Q 004349 480 ISRGYYG-AA-YDLDSIEIQMQKLFTRGFSSV 509 (759)
Q Consensus 480 ~~gG~~~-~v-~d~~~l~~~l~~~l~~~~~p~ 509 (759)
.-.|... .+ .|.+.+.+.+...+.++.+.+
T Consensus 324 ~ip~s~vg~L~~dSsNiv~LI~~aY~~i~s~V 355 (472)
T 3t3p_B 324 LIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKV 355 (472)
T ss_dssp TSTTCEEEECCTTSTTHHHHHHHHHHHHTTCE
T ss_pred hCCCceeeeccccchhHHHHHHHHHHHhheEE
Confidence 6545443 33 455678888888888887654
No 40
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.30 E-value=0.00087 Score=78.25 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=72.1
Q ss_pred ceEEEEecCCCcccCCCCCceEEEEEcCCCCCCCCChHHHHHH---HHHHHHhCCCCCeEEEEEECCceE-E--------
Q 004349 308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNA---LAVALSKLDPGDSFNIVAFNGETY-L-------- 375 (759)
Q Consensus 308 ~~f~l~~~P~~~~~~~~~~~dvvfVlD~SGSM~g~~i~~aK~a---l~~~L~~L~~~d~f~Ii~F~~~~~-~-------- 375 (759)
-.|.+.+.+.. ..|.|++||+|.|+||.. .|+.+|+. |..-|+.+..+-||++.+|.+... .
T Consensus 91 ~~f~~~~~~~~-----~ypvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~ 164 (687)
T 3k6s_B 91 AAFNVTFRRAK-----GYPIDLYYLMDLSYSMLD-DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDK 164 (687)
T ss_dssp EEEEEEECCCC-----CCCCEEEEEEECSSTTHH-HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTT
T ss_pred eEEEEEEeccC-----CCceeEEEEEcCCcchHH-HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchh
Confidence 35666666543 367999999999999985 56666664 344455666778999999998421 0
Q ss_pred --------------------eeccccccCHHHHHHHHHHHhccccCCCCCc----hHHHHHHHH---HHHhcCCCCCCEE
Q 004349 376 --------------------FSTSMELATKEAVERAHQWIGINFIAGGSTN----ICAPLTKAV---EMLTNSRGSIPII 428 (759)
Q Consensus 376 --------------------~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT~----i~~aL~~A~---~~l~~~~~~~~~I 428 (759)
..++ ..+... ..+.|+ .....|+-+ -.+||..|+ +.+.-+. ..+.|
T Consensus 165 ~~~Pc~~~~~~c~~~f~f~~~l~l--t~~~~~---F~~~v~-~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rll 237 (687)
T 3k6s_B 165 LRNPCPNKEKECQPPFAFRHVLKL--TNNSNQ---FQTEVG-KQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLL 237 (687)
T ss_dssp TTCCCCSCCCCCCCCCSCEEEEEE--ESCSHH---HHHHHH-TSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEE
T ss_pred ccCCCCCCCCCcCCcccceeeccc--CCCHHH---HHHHHh-hccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEE
Confidence 0111 123333 444444 344445433 355666665 4444444 67899
Q ss_pred EEEeCCCC
Q 004349 429 FLVTDGAV 436 (759)
Q Consensus 429 iLlTDG~~ 436 (759)
||+||...
T Consensus 238 V~~TDa~~ 245 (687)
T 3k6s_B 238 VFATDDGF 245 (687)
T ss_dssp EEECSSCC
T ss_pred EEECCCcc
Confidence 99999764
No 41
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=97.28 E-value=0.043 Score=65.19 Aligned_cols=226 Identities=12% Similarity=0.183 Sum_probs=131.8
Q ss_pred CCCCCceEEEEEcCCCC-CCCCChHHHHHHHHHHHHhCCCC-------CeEEEEEECCceEEee--c-------------
Q 004349 322 RKVFKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLDPG-------DSFNIVAFNGETYLFS--T------------- 378 (759)
Q Consensus 322 ~~~~~~dvvfVlD~SGS-M~g~~i~~aK~al~~~L~~L~~~-------d~f~Ii~F~~~~~~~~--~------------- 378 (759)
..+.|--++||||+|-. ....-++.+++++...|+.|+++ .+|+||+|++..+.+. +
T Consensus 173 ~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~ 252 (770)
T 3efo_B 173 KPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDV 252 (770)
T ss_dssp SCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCT
T ss_pred CCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEeccc
Confidence 34567889999999853 44446889999999999999865 5999999998865421 1
Q ss_pred ------c----cc--ccCHHHHHHHHHHHhccc--cCCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCC-C-----
Q 004349 379 ------S----ME--LATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE-D----- 438 (759)
Q Consensus 379 ------~----~~--~~t~~~i~~a~~~I~~~~--~~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~-~----- 438 (759)
. .. ......++.+++.|.... ....+|-++.||+.|+..+...... -.|++++.|.++ .
T Consensus 253 ~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~G-GkI~~F~s~lP~t~GpG~l 331 (770)
T 3efo_B 253 GEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCP-GKLFIFHSSLPTAEAPGKL 331 (770)
T ss_dssp TSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCC-EEEEEEECSCCCSSSTTCC
T ss_pred ccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCCC-cEEEEEecCCCCcCCCccc
Confidence 0 00 113567777777775322 2346788999999999988642222 256666666442 1
Q ss_pred -------------h-------HHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCCch--HHH
Q 004349 439 -------------E-------RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDS--IEI 496 (759)
Q Consensus 439 -------------~-------~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~~~--l~~ 496 (759)
+ ....+.+.....+. ...+.+|.++ ...++-.-|..+++.+||..++..+... -.+
T Consensus 332 ~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~-~i~VDlF~~s-~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~ 409 (770)
T 3efo_B 332 KNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAH-GCSVTLFLFP-SQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQ 409 (770)
T ss_dssp CCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHT-TEEEEEEECC-SSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHH
T ss_pred cccccccccCCcchhhhhcchHHHHHHHHHHHHHc-CeEEEEEEec-CCccChHHHHHHHhhcCceEEEecCCcchhHHH
Confidence 0 11123333333222 2334455443 2457888999999999999988776542 233
Q ss_pred HHHHHHHhhh-cceEee--EEEEecCCCcceeecc---------CCCCCCCCCCcEEEEEEEcCCC
Q 004349 497 QMQKLFTRGF-SSVLAN--IAIDTLKDLDEFEMYP---------SRIPDLSSESPLIVSGRYQGKF 550 (759)
Q Consensus 497 ~l~~~l~~~~-~p~l~d--i~l~~~~~~~~~ev~P---------~~i~~lf~g~~liv~Gr~~g~~ 550 (759)
++.+.+.+.. .+...+ +++....+......+- -.++.+.....+.+.-.+.++.
T Consensus 410 ~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l 475 (770)
T 3efo_B 410 QFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKL 475 (770)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCC
T ss_pred HHHHHHHHhhhhceeeeEEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCCC
Confidence 4444444332 233223 2333222221111111 1234455666666666666543
No 42
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=97.17 E-value=0.013 Score=64.44 Aligned_cols=187 Identities=12% Similarity=0.131 Sum_probs=107.7
Q ss_pred eEEEEecCCCcccCCCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC---CCCCeEEEEEECCceE-Eee-------
Q 004349 309 MFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETY-LFS------- 377 (759)
Q Consensus 309 ~f~l~~~P~~~~~~~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~-~~~------- 377 (759)
.|.+.+.+.. ..|.|++||+|.|+||.. .++.+|+....+++.| ..+-|+++.+|-+... .|.
T Consensus 110 ~f~v~~~~~~-----~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~ 183 (454)
T 3vi3_B 110 TFTLKFKRAE-----DYPIDLYYLMDLSYSMKD-DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKL 183 (454)
T ss_dssp CEEEEEECCS-----CCCEEEEEEEECSGGGHH-HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTT
T ss_pred EEEEEEecCC-----CCceeEEEEecCCcchhh-HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHh
Confidence 4666655543 478999999999999985 6788887766666554 4566999999987521 000
Q ss_pred ------------cc----ccccCHHHHHHHHHHHhccccCCCCCch----HHHHHHHHH---HHhcCCCCCCEEEEEeCC
Q 004349 378 ------------TS----MELATKEAVERAHQWIGINFIAGGSTNI----CAPLTKAVE---MLTNSRGSIPIIFLVTDG 434 (759)
Q Consensus 378 ------------~~----~~~~t~~~i~~a~~~I~~~~~~~GgT~i----~~aL~~A~~---~l~~~~~~~~~IiLlTDG 434 (759)
+. .... .++.....++|+ .....|+-+. .+||..|.- .+.-++ ..+.+||+||.
T Consensus 184 ~nPC~~~~~c~~~f~fr~~l~L-T~d~~~F~~~V~-~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV~~TDa 260 (454)
T 3vi3_B 184 RNPCTSEQNCTTPFSYKNVLSL-TNKGEVFNELVG-KQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVFSTDA 260 (454)
T ss_dssp TCCSCSSSCCCCCCSEEEEEEE-ESCHHHHHHHHT-TCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESS
T ss_pred cCCCcCccCCCCCcceeeeeec-CCCHHHHHHHHh-hccccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEEEECCC
Confidence 00 0000 123445555555 4555555432 445554432 233333 67799999997
Q ss_pred CCC---ChH---------------------------HHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCE
Q 004349 435 AVE---DER---------------------------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGY 484 (759)
Q Consensus 435 ~~~---~~~---------------------------~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~ 484 (759)
... +.. ..+..+.+.+.+.. -..||+|-- . .....+.|+..=.|.
T Consensus 261 ~fH~agDgkL~GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~n--I~~IFAVt~--~-~~~~Y~~L~~~ip~s 335 (454)
T 3vi3_B 261 GFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENN--IQTIFAVTE--E-FQPVYKELKNLIPKS 335 (454)
T ss_dssp CBCCTTTTGGGTCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTT--EEEEEEEEG--G-GHHHHHHHHHHSTTE
T ss_pred CcCcCCCccccceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHhcC--CcEEEEEcC--c-cchHHHHHHHhCCCc
Confidence 632 100 01333444443322 135777732 1 334567777765555
Q ss_pred EE-EE-cCCchHHHHHHHHHHhhhcce
Q 004349 485 YG-AA-YDLDSIEIQMQKLFTRGFSSV 509 (759)
Q Consensus 485 ~~-~v-~d~~~l~~~l~~~l~~~~~p~ 509 (759)
.. .+ .|.+.+-+.+...+.++.+.+
T Consensus 336 ~vg~Ls~dSsNiv~LI~~aY~~i~S~V 362 (454)
T 3vi3_B 336 AVGTLSANSSNVIQLIIDAYNSLSSEV 362 (454)
T ss_dssp EEEEECTTCTTHHHHHHHHHHHHHTCE
T ss_pred eeeEccccchhHHHHHHHHHHHhheEE
Confidence 43 33 445678888888888887654
No 43
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=97.01 E-value=0.012 Score=65.33 Aligned_cols=183 Identities=15% Similarity=0.172 Sum_probs=105.6
Q ss_pred eEEEEecCCCcccCCCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhC---CCCCeEEEEEECCceE-E---------
Q 004349 309 MFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETY-L--------- 375 (759)
Q Consensus 309 ~f~l~~~P~~~~~~~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~-~--------- 375 (759)
.|.+.+.+.. ..|.|++||+|.|+||.. .++.+|+....+++.| ..+-|+++.+|-+... .
T Consensus 120 ~f~v~~~~~~-----~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l 193 (503)
T 3v4v_B 120 QLQVRFLRAE-----GYPVDLYYLMDLSYSMKD-DLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKL 193 (503)
T ss_dssp EEEEEEECCS-----SCCEEEEEEEECSGGGHH-HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHH
T ss_pred EEEEEEEccC-----CCceeEEEEEecCcchhh-HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHh
Confidence 4555555543 478999999999999985 7888888766665554 4566999999987521 0
Q ss_pred -------------------eeccccccCHHHHHHHHHHHhccccCCCCCc----hHHHHHHHH---HHHhcCCCCCCEEE
Q 004349 376 -------------------FSTSMELATKEAVERAHQWIGINFIAGGSTN----ICAPLTKAV---EMLTNSRGSIPIIF 429 (759)
Q Consensus 376 -------------------~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT~----i~~aL~~A~---~~l~~~~~~~~~Ii 429 (759)
..+++ ++..+..+.|+ .....|+-+ -.+||..|+ +.+.-+. ..+.||
T Consensus 194 ~~PC~~~~~~c~p~f~fr~~l~LT-----~d~~~F~~~V~-~~~iSGnlD~PEggfDAlmQaavC~~~IgWR~-a~rllV 266 (503)
T 3v4v_B 194 RHPCPTRLERCQSPFSFHHVLSLT-----GDAQAFEREVG-RQSVSGNLDSPEGGFDAILQAALCQEQIGWRN-VSRLLV 266 (503)
T ss_dssp HCCSSCSSSCCCCCCSEEEEEEEE-----SCSHHHHHHHT-TCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEE
T ss_pred cCCCcCCCCCCCCCcceEEEEEec-----CCHHHHHHHHh-hcCccCCCCCCchHHHHHHHHhhcccccCCCc-ceEEEE
Confidence 01111 13344555554 445555533 345665554 3443333 567999
Q ss_pred EEeCCCCC---Ch-----------------H-----------HHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHH
Q 004349 430 LVTDGAVE---DE-----------------R-----------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA 478 (759)
Q Consensus 430 LlTDG~~~---~~-----------------~-----------~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA 478 (759)
|+||.... +. . ..+..+.+.+.+.+ + ..||+|- . ......+.|+
T Consensus 267 ~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~enn-I-~~IFAVt--~-~~~~~Y~~L~ 341 (503)
T 3v4v_B 267 FTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAAN-I-QPIFAVT--S-AALPVYQELS 341 (503)
T ss_dssp EEESSCBCCTTGGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHT-E-EEEEEEC--S-SSHHHHHHHH
T ss_pred EECCCCcCcCCCccccceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcC-C-eEEEEEc--c-cchhHHHHHH
Confidence 99997531 00 0 01223333332221 1 3466663 2 2345667777
Q ss_pred hhcCCE-EEEE-cCCchHHHHHHHHHHhhhcce
Q 004349 479 MISRGY-YGAA-YDLDSIEIQMQKLFTRGFSSV 509 (759)
Q Consensus 479 ~~~gG~-~~~v-~d~~~l~~~l~~~l~~~~~p~ 509 (759)
..=.|. .-.+ .|.+.+.+.+...+.++.+.+
T Consensus 342 ~~ip~s~vg~Ls~dSsNiv~LI~~aY~~i~S~V 374 (503)
T 3v4v_B 342 KLIPKSAVGELSEDSSNVVQLIMDAYNSLSSTV 374 (503)
T ss_dssp TTSTTCEEEECCTTSCTHHHHHHHHHHHHHTCE
T ss_pred HhCCCceeeEccccchhHHHHHHHHHHHhheEE
Confidence 764444 3333 345678888888888887654
No 44
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=96.84 E-value=0.041 Score=65.31 Aligned_cols=168 Identities=13% Similarity=0.155 Sum_probs=108.7
Q ss_pred CCCCCceEEEEEcCCCC-CCCCChHHHHHHHHHHHHhCCCC-------CeEEEEEECCceEEee--c-------------
Q 004349 322 RKVFKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLDPG-------DSFNIVAFNGETYLFS--T------------- 378 (759)
Q Consensus 322 ~~~~~~dvvfVlD~SGS-M~g~~i~~aK~al~~~L~~L~~~-------d~f~Ii~F~~~~~~~~--~------------- 378 (759)
..+.|--++||||+|-. ....-++.+++++...|+.|+++ .+|+||+|++..+.+. .
T Consensus 169 ~~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl 248 (766)
T 3eh2_A 169 KFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDV 248 (766)
T ss_dssp SCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCT
T ss_pred CCCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecCh
Confidence 34567789999999843 33346788999999999999865 6899999999865421 1
Q ss_pred ----------ccc--ccCHHHHHHHHHHHhccc--cCCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCC-Ch----
Q 004349 379 ----------SME--LATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE-DE---- 439 (759)
Q Consensus 379 ----------~~~--~~t~~~i~~a~~~I~~~~--~~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~-~~---- 439 (759)
... ......++.+++.|.... ....+|-++.||+.|+..+..... .-.|++++.|.++ .+
T Consensus 249 ~d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~-GGkI~~F~s~lP~t~GpG~l 327 (766)
T 3eh2_A 249 ADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAEC-AGKLFLFHTSLPIAEAPGKL 327 (766)
T ss_dssp TTCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTC-CEEEEEEECSCCCSSSTTCC
T ss_pred hhhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccCCC-CcEEEEEecCCCCcCCCccc
Confidence 001 113567777777775322 234678899999999998865322 2356666666442 10
Q ss_pred ---------------------HHHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCCc
Q 004349 440 ---------------------RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLD 492 (759)
Q Consensus 440 ---------------------~~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~~ 492 (759)
....+.+.....+. ...+.+|.++ ...++-.-|..+++.+||..++..+..
T Consensus 328 ~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~-~i~VDlF~~s-~~~vdlatl~~l~~~TGG~v~~y~~F~ 399 (766)
T 3eh2_A 328 KNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQ-GCCVDLFLFP-NQYVDVATLSVVPQLTGGSVYKYASFQ 399 (766)
T ss_dssp CCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHH-TEEEEEEECC-SSCCCHHHHTHHHHHTTCCEEECTTCC
T ss_pred ccccccccCCCcchhhhccchHHHHHHHHHHHHhC-CeEEEEEEec-CCCcChHHHHHHHhhcCceEEEeCCCc
Confidence 01122333322221 2334455543 245788899999999999998877654
No 45
>4g2a_A Hypothetical protein; two domains protein, yarhg domain (PFAM13308), DUF4424 (PF14 structural genomics; HET: MSE; 2.33A {Legionella pneumophila subsp}
Probab=96.56 E-value=0.082 Score=55.32 Aligned_cols=110 Identities=10% Similarity=0.108 Sum_probs=78.6
Q ss_pred CceecceeceEEEEEE---EE---------eceEEEEEEEEEEEccCCCCceeEEEEEeecCCCc---------------
Q 004349 81 PSLIPLQMNAVELDVD---CY---------LDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQG--------------- 133 (759)
Q Consensus 81 ~~~vPL~~~~v~v~V~---~~---------~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLpe~a--------------- 133 (759)
+.++||+...|.+.=+ .. ...+.|+|.-+|.|| +.......+.||+|...
T Consensus 11 ~~~iP~~~s~Ism~kE~i~ik~~~~~~~~~~~~~~V~v~f~F~Np---~~~~ktI~vgFP~p~~~~~~~~~~~~~~~~~~ 87 (322)
T 4g2a_A 11 SLPIPVSQPHIKMVSELIRISGKNLNEPQMNGSWHYNCNFTFKNT---LNKEVTISMAFPFPINDGNSEIALPAGQQTNV 87 (322)
T ss_dssp ECCEESSCCSEEEEEEEEEEEEESTTCTTCCCEEEEEEEEEEEEC---SSSCEEEEEEEEECBCCSSSEECCCTTCCCCT
T ss_pred CeeeeeccCceeEEEEEEEEEeccccccccccceEEEEEEEEeCC---CCCcEEEEEEecCCCccCCcccccccccCCCC
Confidence 4578888876665422 21 124789999999994 68889999999988432
Q ss_pred ---eEEEEEEEECCEEEEEEEEeeccccccccccccccccceeCCeEEEEccccCCCCEEEEEEEEEEEeeec
Q 004349 134 ---SILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYR 203 (759)
Q Consensus 134 ---~V~~f~~~i~gk~i~g~V~eke~A~~~~~~~~~~~aall~~n~F~~~VgnIppg~~v~V~l~Y~q~L~~~ 203 (759)
.|.+|...||||.+..++.....- .+.+.--.+.|...+ ..++|+++.|+-+|.-.+...
T Consensus 88 ~~~~i~dFkt~VNGk~V~~~~~~~a~~---------~~k~v~~~~~Y~f~~-~F~~G~~~~V~HsY~~~~s~~ 150 (322)
T 4g2a_A 88 GQALVYDFLVTVNDKQVSAQRGNIAPD---------QNKGLYYEDAYFWKT-TFPPLATVNIHHDYSTGATYD 150 (322)
T ss_dssp TCBSCEEEEEEETTEEECCEEEECCCB---------GGGTBCCSEEEEEEE-EECTTCEEEEEEEEEEECEEE
T ss_pred CCcceeeEEEEECCEEcccchhhcCcc---------ccCCcccceeEEEee-ecCCCCeeEEEEEEEecCcCC
Confidence 388999999999999987543321 111112345676666 789999999999998777665
No 46
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=25.11 E-value=2.9e+02 Score=24.37 Aligned_cols=82 Identities=11% Similarity=0.274 Sum_probs=45.1
Q ss_pred EEEEEEEEEEEccCCCCceeEEEEEeecCCCceEEEEEEEECCEEEEEEEEeeccccccccccccccccceeCCeEEEE-
Q 004349 102 AFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLT- 180 (759)
Q Consensus 102 A~vtv~q~f~N~~~~~~~~~E~~y~FPLpe~a~V~~f~~~i~gk~i~g~V~eke~A~~~~~~~~~~~aall~~n~F~~~- 180 (759)
-.+.++.+..| .++++++-.| + .|+.++=.|.+++. +..+.-.. ...|+.-
T Consensus 18 ~~v~~~ltv~N---~s~~~v~l~f--~--------------Sgq~~Df~v~d~~G-~~VwrwS~--------~~~FtQa~ 69 (120)
T 3isy_A 18 EQIKFNMSLKN---QSERAIEFQF--S--------------TGQKFELVVYDSEH-KERYRYSK--------EKMFTQAF 69 (120)
T ss_dssp SCEEEEEEEEE---CSSSCEEEEE--S--------------SSCCEEEEEECTTC-CEEEETTT--------TCCCCCCC
T ss_pred CeEEEEEEEEc---CCCCcEEEEe--C--------------CCCEEEEEEECCCC-CEEEEccc--------cchhhhhh
Confidence 36778888899 4677776443 3 24445555555433 11111111 1122211
Q ss_pred -ccccCCCCEEEEEEEEEEEeeecCCeEEEEEee
Q 004349 181 -LPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPF 213 (759)
Q Consensus 181 -VgnIppg~~v~V~l~Y~q~L~~~~g~~~l~lp~ 213 (759)
.-.|+||+.+..+.+|.+ ....|.|.+..-|
T Consensus 70 ~~~tl~pGE~~~f~~~w~~--~~~pG~Ytl~a~l 101 (120)
T 3isy_A 70 QNLTLESGETYDFSDVWKE--VPEPGTYEVKVTF 101 (120)
T ss_dssp EEEEECTTCEEEEEEEESS--CCCSEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEEeCC--CCCCccEEEEEEE
Confidence 124799999999999884 2346777755533
No 47
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=23.84 E-value=1.3e+02 Score=25.79 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=19.4
Q ss_pred ccceeCCeEEEEccccCCCCEEEEEEEEE
Q 004349 169 GSFLKPNIFTLTLPQIDGGSYLSIRLRWS 197 (759)
Q Consensus 169 aall~~n~F~~~VgnIppg~~v~V~l~Y~ 197 (759)
+||.++ -+..+++|+||+++++++.+.
T Consensus 46 ~GL~~~--~~~~~~~v~pg~~~~~~~~~~ 72 (102)
T 2xzz_A 46 SGLQRP--KILNVGDIGGNETVTLRQSFV 72 (102)
T ss_dssp TTTEEE--EEEEECCBCTTCEEEEEEEEC
T ss_pred CCCCcc--eEEEcCcCCCCCEEEEEEEEe
Confidence 355555 345678999999988877665
Done!