Query 004350
Match_columns 759
No_of_seqs 591 out of 3201
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 21:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 8E-48 1.7E-52 422.2 19.8 421 133-756 2-431 (549)
2 KOG0110 RNA-binding protein (R 100.0 2.1E-33 4.6E-38 315.0 13.0 349 26-419 246-663 (725)
3 TIGR01628 PABP-1234 polyadenyl 100.0 2.9E-28 6.4E-33 283.6 23.7 303 25-361 41-371 (562)
4 TIGR01628 PABP-1234 polyadenyl 100.0 1E-28 2.2E-33 287.5 19.0 224 193-419 87-334 (562)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.7E-28 1.9E-32 263.1 22.9 222 135-356 22-351 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.4E-28 1.8E-32 263.2 19.0 159 193-355 2-172 (352)
7 TIGR01659 sex-lethal sex-letha 100.0 2.7E-27 5.9E-32 258.8 21.1 163 190-356 103-277 (346)
8 KOG0117 Heterogeneous nuclear 99.9 1.4E-27 2.9E-32 256.2 16.4 237 118-359 84-336 (506)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 5.8E-26 1.3E-30 259.7 22.0 245 101-354 7-351 (481)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.1E-25 2.5E-30 257.3 24.4 305 25-354 37-480 (481)
11 TIGR01648 hnRNP-R-Q heterogene 99.9 1.4E-25 3.1E-30 257.4 20.3 231 101-356 63-309 (578)
12 TIGR01645 half-pint poly-U bin 99.9 3.7E-25 7.9E-30 254.4 20.5 162 193-354 106-284 (612)
13 KOG0148 Apoptosis-promoting RN 99.9 3.7E-25 8.1E-30 224.9 17.7 164 194-358 62-242 (321)
14 KOG0145 RNA-binding protein EL 99.9 1.6E-24 3.4E-29 218.8 16.5 238 101-354 45-358 (360)
15 TIGR01622 SF-CC1 splicing fact 99.9 1.2E-23 2.5E-28 238.8 20.2 163 190-353 85-265 (457)
16 KOG0145 RNA-binding protein EL 99.9 4.2E-24 9.1E-29 215.7 13.2 159 191-353 38-208 (360)
17 KOG0144 RNA-binding protein CU 99.9 2.1E-22 4.5E-27 215.6 18.9 163 192-357 32-209 (510)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.6E-22 1.4E-26 227.3 23.9 251 101-353 180-501 (509)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.3E-22 4.9E-27 231.2 20.1 164 189-354 170-375 (509)
20 TIGR01648 hnRNP-R-Q heterogene 99.9 1.5E-22 3.2E-27 232.7 17.7 178 193-380 57-257 (578)
21 TIGR01622 SF-CC1 splicing fact 99.9 8.1E-22 1.8E-26 223.8 22.1 160 194-353 186-447 (457)
22 KOG0127 Nucleolar protein fibr 99.9 1.5E-21 3.3E-26 213.7 19.8 167 194-360 117-384 (678)
23 KOG0117 Heterogeneous nuclear 99.9 1.8E-21 3.9E-26 209.4 16.5 213 192-435 81-318 (506)
24 KOG0131 Splicing factor 3b, su 99.9 1.2E-21 2.6E-26 189.8 12.5 163 192-357 7-180 (203)
25 KOG0123 Polyadenylate-binding 99.9 4.9E-21 1.1E-25 210.9 17.2 277 135-419 17-319 (369)
26 KOG0123 Polyadenylate-binding 99.9 5.9E-21 1.3E-25 210.3 17.0 196 195-419 2-216 (369)
27 KOG0109 RNA-binding protein LA 99.8 4.1E-21 8.9E-26 197.2 10.5 150 195-356 3-152 (346)
28 PF04059 RRM_2: RNA recognitio 99.8 1.6E-21 3.5E-26 174.9 4.8 45 712-756 1-45 (97)
29 KOG0127 Nucleolar protein fibr 99.8 4E-20 8.6E-25 202.7 15.9 162 195-356 6-198 (678)
30 KOG0144 RNA-binding protein CU 99.8 9.8E-20 2.1E-24 195.2 12.4 235 122-356 39-506 (510)
31 KOG0147 Transcriptional coacti 99.8 8E-20 1.7E-24 201.7 5.4 165 189-354 174-358 (549)
32 KOG0110 RNA-binding protein (R 99.8 9.5E-19 2.1E-23 197.6 13.6 163 195-357 516-696 (725)
33 KOG0124 Polypyrimidine tract-b 99.8 1E-18 2.2E-23 183.6 11.3 157 194-352 113-288 (544)
34 KOG0146 RNA-binding protein ET 99.8 1.1E-18 2.5E-23 177.2 10.6 166 193-358 18-369 (371)
35 TIGR01645 half-pint poly-U bin 99.8 2.6E-17 5.7E-22 189.9 22.7 75 193-267 203-282 (612)
36 KOG0148 Apoptosis-promoting RN 99.7 1.2E-17 2.5E-22 170.6 10.5 194 192-419 4-208 (321)
37 KOG4206 Spliceosomal protein s 99.7 1.4E-16 3E-21 160.2 16.2 162 191-352 6-220 (221)
38 KOG4205 RNA-binding protein mu 99.7 2.3E-17 4.9E-22 176.8 10.2 163 193-357 5-179 (311)
39 KOG0147 Transcriptional coacti 99.6 1.4E-15 3E-20 168.5 14.0 246 102-352 170-526 (549)
40 KOG0105 Alternative splicing f 99.6 2.9E-15 6.2E-20 145.7 13.8 148 192-341 4-175 (241)
41 TIGR01659 sex-lethal sex-letha 99.6 7.7E-15 1.7E-19 161.1 9.2 128 277-419 105-243 (346)
42 KOG0106 Alternative splicing f 99.5 2.8E-14 6.1E-19 144.9 6.9 150 195-350 2-167 (216)
43 PLN03134 glycine-rich RNA-bind 99.5 1.9E-13 4.2E-18 132.3 10.7 78 278-355 33-115 (144)
44 PLN03134 glycine-rich RNA-bind 99.4 6.2E-13 1.3E-17 128.8 12.4 81 191-271 31-116 (144)
45 KOG1548 Transcription elongati 99.4 4.6E-12 1E-16 133.9 18.9 165 191-355 131-353 (382)
46 KOG1457 RNA binding protein (c 99.4 9.7E-13 2.1E-17 131.6 12.4 150 193-342 33-274 (284)
47 KOG4211 Splicing factor hnRNP- 99.3 1.5E-11 3.3E-16 135.2 15.7 157 193-352 9-180 (510)
48 PF00076 RRM_1: RNA recognitio 99.3 4.2E-12 9.1E-17 105.7 8.8 66 282-347 1-70 (70)
49 KOG1190 Polypyrimidine tract-b 99.3 4E-11 8.8E-16 128.9 15.2 161 194-354 297-491 (492)
50 KOG1190 Polypyrimidine tract-b 99.3 2.4E-11 5.3E-16 130.5 13.0 163 193-355 149-374 (492)
51 PF00076 RRM_1: RNA recognitio 99.3 1E-11 2.2E-16 103.4 8.1 66 197-262 1-70 (70)
52 KOG4212 RNA-binding protein hn 99.3 4.9E-11 1.1E-15 128.8 15.2 159 193-351 43-291 (608)
53 KOG0124 Polypyrimidine tract-b 99.3 4.3E-11 9.2E-16 126.7 13.0 159 192-350 208-531 (544)
54 COG0724 RNA-binding proteins ( 99.3 4.3E-11 9.3E-16 122.8 12.8 119 194-312 115-258 (306)
55 KOG0125 Ataxin 2-binding prote 99.2 1.5E-11 3.2E-16 129.2 8.8 77 278-354 95-174 (376)
56 KOG0121 Nuclear cap-binding pr 99.2 1.1E-11 2.4E-16 114.6 6.5 76 191-266 33-113 (153)
57 KOG0107 Alternative splicing f 99.2 1.2E-11 2.7E-16 119.9 7.1 77 193-269 9-85 (195)
58 KOG0107 Alternative splicing f 99.2 1.8E-11 3.9E-16 118.9 7.3 76 279-354 10-85 (195)
59 KOG4212 RNA-binding protein hn 99.2 2.6E-10 5.7E-15 123.2 16.6 70 280-351 537-608 (608)
60 KOG0114 Predicted RNA-binding 99.2 1.4E-10 3E-15 103.8 10.3 83 279-361 18-102 (124)
61 PLN03120 nucleic acid binding 99.2 1.1E-10 2.4E-15 121.8 10.1 74 279-353 4-79 (260)
62 PLN03120 nucleic acid binding 99.1 1.4E-10 3.1E-15 120.9 10.4 75 194-269 4-80 (260)
63 KOG0114 Predicted RNA-binding 99.1 1.4E-10 3E-15 103.8 8.4 79 191-269 15-95 (124)
64 KOG0121 Nuclear cap-binding pr 99.1 6.4E-11 1.4E-15 109.6 6.4 76 278-353 35-115 (153)
65 KOG0122 Translation initiation 99.1 1.8E-10 3.9E-15 117.2 10.1 79 191-269 186-269 (270)
66 KOG0122 Translation initiation 99.1 1.2E-10 2.6E-15 118.4 8.7 77 278-354 188-269 (270)
67 KOG0125 Ataxin 2-binding prote 99.1 1.4E-10 3E-15 122.0 9.3 82 190-271 92-176 (376)
68 PLN03213 repressor of silencin 99.1 1.9E-10 4.1E-15 125.7 10.6 90 277-371 8-100 (759)
69 PF14259 RRM_6: RNA recognitio 99.1 2E-10 4.4E-15 96.5 8.2 66 282-347 1-70 (70)
70 KOG0120 Splicing factor U2AF, 99.1 3.4E-10 7.3E-15 127.6 12.4 164 190-353 285-491 (500)
71 smart00362 RRM_2 RNA recogniti 99.1 3.2E-10 6.9E-15 93.1 9.1 69 281-349 1-72 (72)
72 PF14259 RRM_6: RNA recognitio 99.1 2.4E-10 5.3E-15 96.0 7.9 66 197-262 1-70 (70)
73 KOG0149 Predicted RNA-binding 99.1 1E-10 2.2E-15 118.5 6.2 79 276-355 9-92 (247)
74 KOG0109 RNA-binding protein LA 99.1 8E-11 1.7E-15 122.1 5.2 98 281-381 4-103 (346)
75 KOG0131 Splicing factor 3b, su 99.1 2.5E-10 5.3E-15 111.7 8.0 128 278-419 8-147 (203)
76 KOG4207 Predicted splicing fac 99.1 1.6E-10 3.6E-15 114.7 5.9 76 279-354 13-93 (256)
77 KOG0149 Predicted RNA-binding 99.1 2.7E-10 5.8E-15 115.6 7.2 76 191-267 9-89 (247)
78 PF13893 RRM_5: RNA recognitio 99.1 7.7E-10 1.7E-14 89.4 8.5 56 296-351 1-56 (56)
79 smart00362 RRM_2 RNA recogniti 99.0 1.1E-09 2.3E-14 90.0 8.4 69 196-264 1-72 (72)
80 KOG0113 U1 small nuclear ribon 99.0 1.1E-09 2.4E-14 114.1 9.3 78 190-267 97-179 (335)
81 KOG1456 Heterogeneous nuclear 99.0 5.1E-09 1.1E-13 111.7 14.2 169 187-356 24-201 (494)
82 KOG0113 U1 small nuclear ribon 99.0 1.4E-09 3E-14 113.4 9.6 88 267-354 89-181 (335)
83 KOG4207 Predicted splicing fac 99.0 5.8E-10 1.2E-14 110.9 6.4 78 190-267 9-91 (256)
84 KOG0105 Alternative splicing f 99.0 6.3E-10 1.4E-14 108.8 6.1 78 278-355 5-84 (241)
85 cd00590 RRM RRM (RNA recogniti 99.0 3.2E-09 6.9E-14 87.6 9.5 70 281-350 1-74 (74)
86 PLN03121 nucleic acid binding 99.0 2.5E-09 5.5E-14 110.1 10.6 72 194-266 5-78 (243)
87 PLN03213 repressor of silencin 99.0 1.5E-09 3.2E-14 119.0 9.3 78 192-269 8-88 (759)
88 KOG4660 Protein Mei2, essentia 99.0 8.6E-10 1.9E-14 123.3 7.6 166 190-358 71-254 (549)
89 PLN03121 nucleic acid binding 99.0 2.3E-09 5.1E-14 110.4 10.1 73 279-352 5-79 (243)
90 smart00360 RRM RNA recognition 98.9 2.7E-09 5.8E-14 87.1 7.7 66 284-349 1-71 (71)
91 PF13893 RRM_5: RNA recognitio 98.9 2.4E-09 5.1E-14 86.6 6.8 56 211-266 1-56 (56)
92 cd00590 RRM RRM (RNA recogniti 98.9 5.7E-09 1.2E-13 86.1 8.8 70 196-265 1-74 (74)
93 KOG0111 Cyclophilin-type pepti 98.9 7.9E-10 1.7E-14 110.6 4.0 80 278-357 9-93 (298)
94 smart00360 RRM RNA recognition 98.9 4.3E-09 9.3E-14 85.9 7.7 66 199-264 1-71 (71)
95 COG0724 RNA-binding proteins ( 98.9 6.1E-09 1.3E-13 106.9 9.8 75 279-353 115-194 (306)
96 KOG4211 Splicing factor hnRNP- 98.9 1.3E-08 2.8E-13 112.5 12.4 229 119-349 12-353 (510)
97 KOG1456 Heterogeneous nuclear 98.9 9.8E-08 2.1E-12 102.1 17.7 162 192-353 118-362 (494)
98 KOG0111 Cyclophilin-type pepti 98.9 1.7E-09 3.6E-14 108.3 4.1 80 192-271 8-92 (298)
99 KOG0129 Predicted RNA-binding 98.8 5.7E-08 1.2E-12 108.1 15.5 143 190-335 255-432 (520)
100 KOG0130 RNA-binding protein RB 98.8 5.8E-09 1.3E-13 97.5 6.2 78 275-352 68-150 (170)
101 KOG4205 RNA-binding protein mu 98.8 1.7E-08 3.7E-13 108.9 8.9 155 101-273 11-180 (311)
102 KOG0108 mRNA cleavage and poly 98.8 1.7E-08 3.7E-13 113.2 8.7 79 280-358 19-102 (435)
103 KOG1365 RNA-binding protein Fu 98.8 2.9E-08 6.4E-13 106.3 9.9 160 193-353 160-361 (508)
104 KOG0108 mRNA cleavage and poly 98.8 1.3E-08 2.8E-13 114.2 7.6 77 195-271 19-100 (435)
105 smart00361 RRM_1 RNA recogniti 98.7 3.4E-08 7.3E-13 83.8 7.5 56 293-348 2-69 (70)
106 KOG0126 Predicted RNA-binding 98.7 2.2E-09 4.7E-14 105.0 -0.3 76 192-267 33-113 (219)
107 KOG0130 RNA-binding protein RB 98.7 2.7E-08 5.9E-13 93.1 6.4 81 190-270 68-153 (170)
108 KOG4206 Spliceosomal protein s 98.6 5.5E-08 1.2E-12 98.7 7.4 77 280-356 10-92 (221)
109 KOG0120 Splicing factor U2AF, 98.6 5.2E-08 1.1E-12 110.2 7.9 166 191-358 172-373 (500)
110 KOG0112 Large RNA-binding prot 98.6 2E-08 4.4E-13 117.2 4.4 160 190-356 368-533 (975)
111 KOG0132 RNA polymerase II C-te 98.6 7.1E-08 1.5E-12 111.2 8.4 75 194-269 421-495 (894)
112 KOG0126 Predicted RNA-binding 98.6 5.2E-09 1.1E-13 102.4 -0.8 73 279-351 35-112 (219)
113 smart00361 RRM_1 RNA recogniti 98.5 2.1E-07 4.6E-12 78.9 7.1 56 208-263 2-69 (70)
114 KOG0153 Predicted RNA-binding 98.5 2.2E-07 4.8E-12 99.0 8.1 78 275-353 224-302 (377)
115 KOG0226 RNA-binding proteins [ 98.5 1.2E-07 2.7E-12 97.2 5.2 159 196-354 98-270 (290)
116 KOG0132 RNA polymerase II C-te 98.5 2.8E-07 6.1E-12 106.4 8.4 80 278-358 420-499 (894)
117 KOG4454 RNA binding protein (R 98.5 4E-08 8.7E-13 98.7 1.4 132 192-341 7-150 (267)
118 KOG0146 RNA-binding protein ET 98.5 1.6E-07 3.4E-12 96.7 5.7 82 190-271 281-367 (371)
119 KOG0153 Predicted RNA-binding 98.5 3.6E-07 7.8E-12 97.5 8.5 83 186-269 220-303 (377)
120 KOG4210 Nuclear localization s 98.4 2.5E-07 5.5E-12 99.3 5.8 165 192-357 86-267 (285)
121 KOG0128 RNA-binding protein SA 98.4 5.4E-08 1.2E-12 113.4 -1.4 141 192-353 665-814 (881)
122 KOG0415 Predicted peptidyl pro 98.3 8.5E-07 1.8E-11 94.5 6.0 79 190-268 235-318 (479)
123 KOG0415 Predicted peptidyl pro 98.3 9.9E-07 2.1E-11 94.0 6.2 78 278-355 238-320 (479)
124 KOG4208 Nucleolar RNA-binding 98.2 3.5E-06 7.6E-11 84.6 8.3 80 190-269 45-130 (214)
125 KOG4208 Nucleolar RNA-binding 98.1 6.4E-06 1.4E-10 82.7 8.0 77 278-354 48-130 (214)
126 KOG1365 RNA-binding protein Fu 98.1 8.9E-06 1.9E-10 87.7 8.9 157 192-350 58-239 (508)
127 KOG4661 Hsp27-ERE-TATA-binding 98.1 4.6E-06 1E-10 93.3 6.8 73 280-352 406-483 (940)
128 KOG4661 Hsp27-ERE-TATA-binding 98.1 9.1E-06 2E-10 91.0 9.0 76 192-267 403-483 (940)
129 KOG1457 RNA binding protein (c 98.1 1.1E-05 2.4E-10 81.6 8.2 81 278-358 33-122 (284)
130 KOG4307 RNA binding protein RB 98.0 1.4E-05 3.1E-10 91.4 8.3 167 188-355 305-515 (944)
131 KOG2193 IGF-II mRNA-binding pr 98.0 1.1E-06 2.4E-11 95.4 -1.3 148 195-351 2-154 (584)
132 KOG0533 RRM motif-containing p 97.9 3E-05 6.5E-10 81.1 8.6 77 192-268 81-161 (243)
133 KOG0151 Predicted splicing reg 97.9 1.5E-05 3.2E-10 91.6 6.6 78 276-353 171-256 (877)
134 KOG0116 RasGAP SH3 binding pro 97.9 1.7E-05 3.6E-10 89.0 6.6 75 280-355 289-368 (419)
135 KOG0533 RRM motif-containing p 97.9 3.6E-05 7.9E-10 80.5 8.6 77 278-354 82-162 (243)
136 KOG0106 Alternative splicing f 97.9 8.9E-06 1.9E-10 83.4 3.9 70 281-353 3-72 (216)
137 KOG0116 RasGAP SH3 binding pro 97.8 2.7E-05 5.8E-10 87.4 6.2 72 193-265 287-363 (419)
138 KOG0151 Predicted splicing reg 97.8 4E-05 8.7E-10 88.2 7.2 83 185-267 165-255 (877)
139 KOG4209 Splicing factor RNPS1, 97.7 5.6E-05 1.2E-09 79.0 5.4 79 275-354 97-180 (231)
140 KOG4209 Splicing factor RNPS1, 97.6 9.1E-05 2E-09 77.4 5.4 77 190-267 97-178 (231)
141 KOG4454 RNA binding protein (R 97.5 8.2E-05 1.8E-09 75.3 4.7 74 278-352 8-85 (267)
142 PF11608 Limkain-b1: Limkain b 97.5 0.00043 9.2E-09 60.6 8.3 70 280-354 3-77 (90)
143 KOG4676 Splicing factor, argin 97.5 4.3E-05 9.3E-10 82.8 2.4 157 195-353 8-225 (479)
144 KOG1548 Transcription elongati 97.5 0.00027 5.8E-09 76.0 7.5 74 279-352 134-219 (382)
145 PF11608 Limkain-b1: Limkain b 97.4 0.00058 1.3E-08 59.8 7.3 69 195-268 3-76 (90)
146 PF04059 RRM_2: RNA recognitio 97.4 0.00077 1.7E-08 61.1 8.5 76 280-355 2-88 (97)
147 KOG0226 RNA-binding proteins [ 97.3 0.00033 7.1E-09 72.6 5.0 76 191-266 187-267 (290)
148 PF08777 RRM_3: RNA binding mo 97.3 0.00082 1.8E-08 61.9 7.1 84 281-366 3-91 (105)
149 PF08777 RRM_3: RNA binding mo 96.8 0.0035 7.6E-08 57.8 7.0 59 195-254 2-60 (105)
150 COG5175 MOT2 Transcriptional r 96.7 0.0039 8.5E-08 66.8 7.6 76 278-353 113-202 (480)
151 KOG0128 RNA-binding protein SA 96.7 0.0003 6.4E-09 83.0 -1.0 153 193-346 570-739 (881)
152 KOG0115 RNA-binding protein p5 96.7 0.0033 7.2E-08 65.4 6.4 89 242-341 5-97 (275)
153 KOG4210 Nuclear localization s 96.5 0.0039 8.5E-08 67.3 5.7 76 194-270 184-265 (285)
154 KOG1855 Predicted RNA-binding 96.4 0.0055 1.2E-07 67.7 6.0 75 274-348 226-318 (484)
155 KOG2193 IGF-II mRNA-binding pr 96.3 0.0061 1.3E-07 67.1 6.0 101 280-383 2-107 (584)
156 COG5175 MOT2 Transcriptional r 96.3 0.0067 1.4E-07 65.1 5.9 75 193-267 113-201 (480)
157 PF14605 Nup35_RRM_2: Nup53/35 96.3 0.01 2.2E-07 47.9 5.6 52 280-333 2-53 (53)
158 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.011 2.3E-07 47.7 5.5 52 195-248 2-53 (53)
159 KOG1995 Conserved Zn-finger pr 96.2 0.0045 9.7E-08 67.3 4.3 78 278-355 65-155 (351)
160 KOG4307 RNA binding protein RB 96.0 0.018 4E-07 66.9 8.3 71 194-264 867-942 (944)
161 KOG2314 Translation initiation 96.0 0.015 3.2E-07 66.3 7.2 74 277-350 56-140 (698)
162 PF05172 Nup35_RRM: Nup53/35/4 95.9 0.026 5.6E-07 51.6 7.0 72 279-352 6-90 (100)
163 KOG1995 Conserved Zn-finger pr 95.7 0.011 2.4E-07 64.4 4.5 77 191-267 63-152 (351)
164 KOG0112 Large RNA-binding prot 95.7 0.026 5.7E-07 67.5 7.8 79 190-269 451-531 (975)
165 PF08952 DUF1866: Domain of un 95.6 0.048 1E-06 52.9 7.8 82 278-368 26-116 (146)
166 KOG1855 Predicted RNA-binding 95.5 0.011 2.4E-07 65.5 3.8 65 190-254 227-309 (484)
167 KOG4849 mRNA cleavage factor I 95.4 1.2 2.6E-05 48.6 18.3 72 280-351 81-159 (498)
168 KOG3152 TBP-binding protein, a 95.4 0.0087 1.9E-07 62.4 2.4 68 278-345 73-157 (278)
169 KOG3152 TBP-binding protein, a 95.3 0.012 2.6E-07 61.3 2.9 69 192-260 72-157 (278)
170 PF05172 Nup35_RRM: Nup53/35/4 95.0 0.061 1.3E-06 49.2 6.3 72 193-266 5-89 (100)
171 KOG2314 Translation initiation 94.7 0.041 8.9E-07 62.8 5.3 71 193-263 57-138 (698)
172 KOG1996 mRNA splicing factor [ 94.6 0.072 1.6E-06 56.6 6.4 60 293-352 300-365 (378)
173 KOG2202 U2 snRNP splicing fact 94.5 0.022 4.8E-07 59.5 2.3 60 294-353 83-147 (260)
174 KOG4849 mRNA cleavage factor I 94.1 0.045 9.8E-07 59.1 3.9 70 194-263 80-156 (498)
175 KOG2202 U2 snRNP splicing fact 93.7 0.036 7.8E-07 58.0 2.1 58 210-267 84-146 (260)
176 KOG0129 Predicted RNA-binding 93.7 0.33 7.2E-06 55.4 9.7 62 189-250 365-432 (520)
177 PF15023 DUF4523: Protein of u 92.9 0.4 8.8E-06 46.3 7.6 75 276-353 83-161 (166)
178 KOG1996 mRNA splicing factor [ 92.4 0.25 5.5E-06 52.6 6.0 73 194-266 281-364 (378)
179 PF04847 Calcipressin: Calcipr 91.3 0.35 7.6E-06 49.1 5.6 62 293-355 9-72 (184)
180 KOG2416 Acinus (induces apopto 91.1 0.18 3.8E-06 58.2 3.4 75 278-353 443-521 (718)
181 PF03467 Smg4_UPF3: Smg-4/UPF3 90.8 0.34 7.4E-06 48.8 4.9 79 192-270 5-99 (176)
182 KOG2416 Acinus (induces apopto 90.7 0.22 4.9E-06 57.4 3.8 76 190-266 440-519 (718)
183 KOG2591 c-Mpl binding protein, 90.5 0.49 1.1E-05 54.3 6.3 71 192-264 173-247 (684)
184 PF08675 RNA_bind: RNA binding 90.4 0.95 2.1E-05 40.0 6.6 56 194-253 9-64 (87)
185 PF15023 DUF4523: Protein of u 89.9 1.4 2.9E-05 42.8 7.7 76 189-267 81-160 (166)
186 PF10309 DUF2414: Protein of u 89.3 1.5 3.2E-05 36.7 6.6 54 280-336 6-62 (62)
187 PF08675 RNA_bind: RNA binding 89.2 1.5 3.2E-05 38.8 6.8 53 281-337 11-63 (87)
188 PF08952 DUF1866: Domain of un 89.1 0.95 2.1E-05 44.1 6.2 72 192-267 25-105 (146)
189 KOG4285 Mitotic phosphoprotein 87.4 2.1 4.4E-05 46.2 7.8 71 279-352 197-268 (350)
190 KOG4676 Splicing factor, argin 87.3 0.66 1.4E-05 51.3 4.3 72 280-352 8-87 (479)
191 PF10309 DUF2414: Protein of u 85.6 3.9 8.4E-05 34.3 7.0 53 195-251 6-62 (62)
192 KOG2591 c-Mpl binding protein, 84.1 2.4 5.2E-05 49.0 6.9 69 278-348 174-246 (684)
193 KOG2068 MOT2 transcription fac 83.5 0.5 1.1E-05 51.5 1.2 77 279-355 77-164 (327)
194 KOG2135 Proteins containing th 83.3 0.79 1.7E-05 51.9 2.6 73 281-355 374-447 (526)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 82.2 1.5 3.3E-05 44.2 4.0 73 279-351 7-95 (176)
196 KOG0115 RNA-binding protein p5 81.4 1.4 3.1E-05 46.4 3.5 71 195-265 32-110 (275)
197 PF04847 Calcipressin: Calcipr 81.1 2.4 5.2E-05 43.1 5.0 61 207-268 8-70 (184)
198 PF14111 DUF4283: Domain of un 80.1 1.5 3.3E-05 42.2 3.1 104 206-313 29-139 (153)
199 KOG4285 Mitotic phosphoprotein 79.0 2.9 6.3E-05 45.1 4.9 70 194-266 197-267 (350)
200 KOG2068 MOT2 transcription fac 78.8 0.92 2E-05 49.5 1.2 75 194-268 77-162 (327)
201 PF07292 NID: Nmi/IFP 35 domai 74.3 4 8.7E-05 36.6 3.8 68 234-301 1-74 (88)
202 KOG2253 U1 snRNP complex, subu 73.7 3 6.4E-05 49.3 3.6 68 279-350 40-107 (668)
203 PF07576 BRAP2: BRCA1-associat 73.6 25 0.00054 32.8 9.0 68 191-258 10-81 (110)
204 KOG4574 RNA-binding protein (c 73.4 2.3 5E-05 51.3 2.7 73 281-354 300-374 (1007)
205 KOG2135 Proteins containing th 69.5 2.7 6E-05 47.7 2.0 77 191-269 369-446 (526)
206 PF03880 DbpA: DbpA RNA bindin 66.8 21 0.00047 30.5 6.6 59 289-351 11-74 (74)
207 KOG4574 RNA-binding protein (c 65.3 4.2 9.1E-05 49.2 2.5 73 195-268 299-373 (1007)
208 PF07576 BRAP2: BRCA1-associat 61.2 62 0.0014 30.2 9.0 63 281-343 15-81 (110)
209 KOG4019 Calcineurin-mediated s 54.4 11 0.00023 38.2 2.8 74 281-355 12-91 (193)
210 KOG2253 U1 snRNP complex, subu 53.6 9 0.0002 45.4 2.5 70 192-265 38-107 (668)
211 PF11767 SET_assoc: Histone ly 51.2 60 0.0013 27.6 6.5 55 290-348 11-65 (66)
212 PF03880 DbpA: DbpA RNA bindin 48.6 61 0.0013 27.7 6.3 58 205-266 12-74 (74)
213 KOG2318 Uncharacterized conser 45.9 84 0.0018 37.1 8.5 78 189-266 169-305 (650)
214 KOG2318 Uncharacterized conser 43.9 84 0.0018 37.1 8.2 74 278-351 173-305 (650)
215 PF11767 SET_assoc: Histone ly 43.2 79 0.0017 26.8 6.0 55 205-263 11-65 (66)
216 KOG0804 Cytoplasmic Zn-finger 41.5 95 0.0021 35.7 8.0 65 194-258 74-142 (493)
217 KOG4019 Calcineurin-mediated s 35.6 29 0.00063 35.1 2.6 74 195-269 11-90 (193)
218 KOG2891 Surface glycoprotein [ 34.5 15 0.00032 39.3 0.4 62 195-256 150-247 (445)
219 KOG0804 Cytoplasmic Zn-finger 31.8 1.2E+02 0.0026 34.9 6.8 65 279-343 74-142 (493)
220 PF15519 RBM39linker: linker b 28.7 22 0.00048 30.7 0.5 16 465-480 50-65 (73)
221 KOG2891 Surface glycoprotein [ 27.2 36 0.00078 36.5 1.7 32 280-311 150-193 (445)
222 KOG4483 Uncharacterized conser 22.2 1.9E+02 0.0042 32.8 6.2 54 279-334 391-445 (528)
223 PF15513 DUF4651: Domain of un 20.5 1.6E+02 0.0035 24.8 4.0 18 209-226 9-26 (62)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8e-48 Score=422.20 Aligned_cols=421 Identities=50% Similarity=0.714 Sum_probs=304.1
Q ss_pred cc-cccccCCcEEEEecCcchhhccceeeeeccCcccCcccccccCCCCCCccCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q 004350 133 ED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLEL 211 (759)
Q Consensus 133 ee-dlF~s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~~~~~~~l~n~v~~~~g~~~~~~~~~rtLfVgNLP~~vteeeL 211 (759)
++ ++|..+|++++..+....+.. .....+..+.+..+++..+ .++ || -+|
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~-----------------~~~~~n~~~~~~~~~P~~~--s~~-~~---------~~l 52 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSV-----------------RNSDRNSAGFVFPEHPPGE--SRT-FV---------SEL 52 (549)
T ss_pred CccccccCCCCCCcccccccchhh-----------------cccccCCCccccCCCCCCC--CCC-Ch---------hhH
Confidence 56 899999999886653332211 1112245556667777777 666 77 788
Q ss_pred HHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCCCCCCccCccceEEeccCCCC
Q 004350 212 RSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASV 291 (759)
Q Consensus 212 r~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~~~~~~~~~~tLfV~NLp~~~ 291 (759)
..+|++|++ .+ +++++.+++.++++|+|.|||.++
T Consensus 53 ~a~f~~~~~----------------------------------p~-----------~~~np~~~~~~~~~L~v~nl~~~V 87 (549)
T KOG4660|consen 53 SALFEPFNK----------------------------------PL-----------RPDNPSEKDMNQGTLVVFNLPRSV 87 (549)
T ss_pred HhhhhccCC----------------------------------CC-----------CcCCCCcccCccceEEEEecCCcC
Confidence 999999811 11 115677888899999999999999
Q ss_pred cHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCchhhhhhhhhhHHHHHH
Q 004350 292 SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARRNLMQQLNQELEQD 371 (759)
Q Consensus 292 TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~r~~~~~q~~~~~~q~ 371 (759)
++++|+++|+.||+|+.|+.+..++|..||+|.|+.+|++|+++|++.+|.|++|+ ++++.++..+-+..
T Consensus 88 sn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~------ 157 (549)
T KOG4660|consen 88 SNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSG------ 157 (549)
T ss_pred CHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhccc------
Confidence 99999999999999999999999999999999999999999999999999999999 77777665444433
Q ss_pred HHhhhccccCCCCCCCCCCCcccCCCcccccccccCCCCCCCcccCCCCCCCccccccccCCCCCCCCCCCCCCCCcccC
Q 004350 372 EARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLATPTPVNSNHLPGLASIL 451 (759)
Q Consensus 372 ~~~~~~~~~Gsp~~ns~p~~f~~~Gsp~~~~~m~~~~rS~~~G~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~ 451 (759)
..+..++++++++++|+.|. ++..||+|.|...+-+.. +...+
T Consensus 158 --~~~~~~~~~p~a~s~pgg~~---------------~~~~~g~l~P~~s~~~~~--------------------~~~~~ 200 (549)
T KOG4660|consen 158 --TSFLNHFGSPLANSPPGGWP---------------RGQLFGMLSPTRSSILLE--------------------HISSV 200 (549)
T ss_pred --chhhhhccchhhcCCCCCCc---------------CCcceeeeccchhhhhhh--------------------cchhc
Confidence 56778899999999999997 567788787763221111 11111
Q ss_pred CCCCCCCCccCCCCCCCccccc--cccccCcccccccccccCCCCccccccCCCCCCCCCCCCCCCCCCCCccCcCCccc
Q 004350 452 PPHLSNTGKIAPIGKDQGRANQ--TNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGVGTLSGPQFL 529 (759)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (759)
-.... +...+.-.| ..+.|++ .+|.++|... |..+++..|+.+++|+-
T Consensus 201 ~~~~~--------~~~~~~~~hq~~~~~~~~----------~s~a~~~~~~----------G~~~s~~~~v~t~S~~~-- 250 (549)
T KOG4660|consen 201 DGSSP--------GRETPLLNHQRFVEFADN----------RSYAFSEPRG----------GFLISNSSGVITFSGPG-- 250 (549)
T ss_pred cCccc--------cccccchhhhhhhhhccc----------cchhhcccCC----------ceecCCCCceEEecCCC--
Confidence 11100 000000001 1222332 3446666621 66777777888888873
Q ss_pred cCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCcccccccCCCCCCCCCCcCCC
Q 004350 530 WGSPPPYSERSSSSAWPTSSVGHPFSSSGQGQGFPYGSRHGSFIGSHHQHHVGSAPSGVSLDRNFGFFPESPETSFTNPV 609 (759)
Q Consensus 530 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hvgsap~~~~~~~~~~~~~~s~~~~~~~~~ 609 (759)
++| |++.+. ..+.....+++||||||||+. .++.
T Consensus 251 -------------g~~------n~~~~~---------r~~~~~~~~~~~~hi~~~Ps~------------------~~l~ 284 (549)
T KOG4660|consen 251 -------------GVW------NPFPSR---------RQRQNSSSSHYEHHIGSAPSM------------------HHLL 284 (549)
T ss_pred -------------ccc------CCcccc---------ccccccCcccccCccCCCccc------------------cccc
Confidence 344 222111 112233445789999999992 2334
Q ss_pred CCCCCCCCCCCCCcccccC--Cccc-cCCCCccCCCCCCCccccCCCCCCCcccCCCCCCCCCcCCCccccc---ccccc
Q 004350 610 PLGGMGLSRNNAGYMMNVG--GRVG-VGLPLNVTDNGSPSLRMMSFPRHGPLFFGNGSYSGLGTTSNEAFTE---RGRTR 683 (759)
Q Consensus 610 ~~~~~g~~~~~g~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~---r~~~r 683 (759)
.-+++++.+..|++.++.. +..| ....++.+|..+++++|.+.+++.. .|. ++. ...+.++...+ ..+.|
T Consensus 285 ~~~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~-~f~-~~~--~~~~~~~~~~~~~~~~~~~ 360 (549)
T KOG4660|consen 285 SRISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFNSKNVGMESSPRVPK-NFE-GRR--SYTSQNDYPVELILNYRDR 360 (549)
T ss_pred ccCccccCCCCCCccccccccCCCCccccCcccccccCCCccccccCCCCc-ccc-ccc--ccccccccccccccccccc
Confidence 4566677777777655433 2233 3477889999999999999999987 773 333 23334555544 78889
Q ss_pred cccCCCCCCCCccccccCchhhccCCCcceeEEeeccCCccCHHHHHHHHhhcCCCcccEEeeccccCCCCCc
Q 004350 684 RVENCGSQVDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKVPQLW 756 (759)
Q Consensus 684 r~~~~~~~~~~~~~~~~~~~~i~~~~d~rtt~m~~nipn~~~~~~l~~~~~~~~~~~ydf~ylp~d~~~~~n~ 756 (759)
|.+....+.+ ++++++|+++|++|+|.|||+||||||||||++||+++ ||.++++||||||||||+|+||.
T Consensus 361 Rtt~~i~ni~-n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkcNv 431 (549)
T KOG4660|consen 361 RTTVMIKNIP-NKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKCNV 431 (549)
T ss_pred hhhhhhhccc-cchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEecccccccccc
Confidence 9998777776 99999999999999999999999999999999999999 99999999999999999999996
No 2
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=314.96 Aligned_cols=349 Identities=19% Similarity=0.225 Sum_probs=260.8
Q ss_pred ccccccccccCcchhhhhhhcCCccceeccCcccCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCcccccc--ccC
Q 004350 26 KKVGSGAWGISFGTEANNASNDASLFSSSLPVLPHEKLNFADSEHHDQSVDDSSPTLNKIDLENESNGPLAGVET--IGS 103 (759)
Q Consensus 26 ~~~~~~tf~~p~~a~~a~~~~d~s~F~grl~~i~~~k~~~~~~~~~~~~~~~~~~~~kk~~~e~e~~~~~ee~e~--i~N 103 (759)
+.+++.+|++|++||+||..+|+.+|||||+||+|.+.+.+.. .+.+.....||+ +++.+.+...+. .||
T Consensus 246 ~lfa~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~~~----~~~~~~~~~~k~----~ke~~rk~~~~~~~~wn 317 (725)
T KOG0110|consen 246 KLFAFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKSTAK----EDASELGSDYKK----EKELKRKAASASFHSWN 317 (725)
T ss_pred HhhHHHhhhhhHHHHhhhhhccccccccceeeecCcchhhhhh----hhHhhcCCcHHH----HHHhccccchhcceecc
Confidence 4458999999999999999999999999999999999765422 222222344666 455555554444 999
Q ss_pred CCccChhHHHhccccccccccCCCCcccccccccccCCcEEEEecCcchhhccceeeeeccCcccCcccccccCCCCCCc
Q 004350 104 LLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTV 183 (759)
Q Consensus 104 lLp~d~d~~~~~vade~~v~kl~~~~~dleedlF~s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~~~~~~~l~n~v~~~ 183 (759)
+|+++.|+++..++.++++.+ .++.|. ..+++ ..++.+.+..+..++..+...+++...
T Consensus 318 ~l~~~~~ava~~~a~k~~v~k--~~i~d~--~~~gs-----------------avr~al~etr~~~e~~~~~ee~gV~l~ 376 (725)
T KOG0110|consen 318 TLFMGANAVAGILAQKLGVEK--SRILDG--SLSGS-----------------AVRLALGETRVVQEVRRFFEENGVKLD 376 (725)
T ss_pred cccccccHHHHHHHHHhCCee--eeeech--hhcch-----------------HHHHHHHHhhhchhhhhhHHhhCcccc
Confidence 999999999999999999988 222221 12211 233333444444444445555555444
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 184 AGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 184 ~g~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
.... .++.++.|+|+|||..+..++|..+|..||.|.++.++ +....|+|+|.++.+|++|++.|++..+...++++
T Consensus 377 ~F~~--~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyl 453 (725)
T KOG0110|consen 377 AFSQ--AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYL 453 (725)
T ss_pred cchh--hhhhcceeeeccCccccccHHHHHHhhcccccceeecC-cccceeeeeecCccchHHHHHHhchhhhccCcccc
Confidence 4443 67889999999999999999999999999999999665 66667999999999999999999999999999999
Q ss_pred eecCCCCCC--------------------CC------------Cc-------------cCc-cceEEeccCCCCcHHHHH
Q 004350 264 HFSIPKDNP--------------------SE------------KD-------------VNQ-GTLVVFNLDASVSNDDLR 297 (759)
Q Consensus 264 ~~a~~k~~~--------------------~~------------~~-------------~~~-~tLfV~NLp~~~TeedLr 297 (759)
.|++...-. .+ .+ ..+ .+|||+||++++|.++|.
T Consensus 454 e~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~ 533 (725)
T KOG0110|consen 454 EWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLE 533 (725)
T ss_pred ccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHH
Confidence 996321100 00 00 011 249999999999999999
Q ss_pred HHhhccCCeEEEEecC--------CCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC--------CCch-----
Q 004350 298 QIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR--------PGGA----- 356 (759)
Q Consensus 298 ~~Fs~fG~I~~v~i~~--------~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~--------~k~~----- 356 (759)
.+|.+.|.|+++.|.. .++|||||+|++.++|++|++.|+|+.|+||.|.|+++. ++..
T Consensus 534 ~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~ 613 (725)
T KOG0110|consen 534 DLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKG 613 (725)
T ss_pred HHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccccccccccc
Confidence 9999999999997642 246999999999999999999999999999999999998 1111
Q ss_pred hhhhhhhhhHHHHHHHHhhhccccCCCCCCCCCCCcccCCCcccccccccCCCCCCCcccCCC
Q 004350 357 RRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPI 419 (759)
Q Consensus 357 r~~~~~q~~~~~~q~~~~~~~~~~Gsp~~ns~p~~f~~~Gsp~~~~~m~~~~rS~~~G~v~~~ 419 (759)
.+.++++++-+.+..+.+.+|..+|.-..-..|.- .+.+..+|||||..+
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-------------~~k~a~rGF~Fv~f~ 663 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-------------IGKGAHRGFGFVDFL 663 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchh-------------hcchhhccceeeecc
Confidence 23467778888888888888766653322222211 235567899999776
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=2.9e-28 Score=283.60 Aligned_cols=303 Identities=18% Similarity=0.226 Sum_probs=218.0
Q ss_pred CccccccccccCcchhhhhhhcCCccceeccCcccCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCcccccc--cc
Q 004350 25 PKKVGSGAWGISFGTEANNASNDASLFSSSLPVLPHEKLNFADSEHHDQSVDDSSPTLNKIDLENESNGPLAGVET--IG 102 (759)
Q Consensus 25 ~~~~~~~tf~~p~~a~~a~~~~d~s~F~grl~~i~~~k~~~~~~~~~~~~~~~~~~~~kk~~~e~e~~~~~ee~e~--i~ 102 (759)
.++.|+.+|.-+++|.+|+..++...|.|+-+.|...+... . ..+..... |.
T Consensus 41 s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~---------------~-----------~~~~~~~~vfV~ 94 (562)
T TIGR01628 41 SLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP---------------S-----------LRRSGVGNIFVK 94 (562)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc---------------c-----------ccccCCCceEEc
Confidence 45789999999999999999999998888887775532110 0 00111123 78
Q ss_pred CCCccChhHHHhccccccccccCCCCcccccccccccCCcEEEEecCcchhhccceeeeeccCcccCcccccccCCCCCC
Q 004350 103 SLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGT 182 (759)
Q Consensus 103 NlLp~d~d~~~~~vade~~v~kl~~~~~dleedlF~s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~~~~~~~l~n~v~~ 182 (759)
||.++.+++.+..++..+|-.. +|.-+.+.--.+.|-.+|+|+..+.+..++.+++-.... ...+. +......
T Consensus 95 nLp~~~~~~~L~~~F~~~G~i~---~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~-~~~i~---v~~~~~~ 167 (562)
T TIGR01628 95 NLDKSVDNKALFDTFSKFGNIL---SCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLN-DKEVY---VGRFIKK 167 (562)
T ss_pred CCCccCCHHHHHHHHHhcCCcc---eeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEec-CceEE---Eeccccc
Confidence 8888766666666655444211 111111100012344677888777777776655411110 00010 0000000
Q ss_pred ccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccC-
Q 004350 183 VAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR- 257 (759)
Q Consensus 183 ~~g~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~- 257 (759)
.... .......++|||+|||.++|+++|+++|++||.|..+.+ .++++|||||+|.+.++|.+|++.|++..+.
T Consensus 168 ~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 168 HERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred cccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 0000 112344678999999999999999999999999998874 4678999999999999999999999999999
Q ss_pred ---CceeeEeecCCCCCCC--------------CCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCC
Q 004350 258 ---RRKLDIHFSIPKDNPS--------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKR 316 (759)
Q Consensus 258 ---gr~L~V~~a~~k~~~~--------------~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~ 316 (759)
|+.|+|.++..+.... .......+|||+||+..+|+++|+++|++||.|++|++ ++.++
T Consensus 247 ~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~ 326 (562)
T TIGR01628 247 AKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSR 326 (562)
T ss_pred cccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcC
Confidence 9999999886654321 01223467999999999999999999999999999986 46779
Q ss_pred ceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCchhhhhh
Q 004350 317 HHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARRNLM 361 (759)
Q Consensus 317 GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~r~~~~ 361 (759)
|||||+|.+.++|.+|++.|||..|+|+.|.|.+++++..++..+
T Consensus 327 g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~ 371 (562)
T TIGR01628 327 GFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHL 371 (562)
T ss_pred CeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHH
Confidence 999999999999999999999999999999999999988776543
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1e-28 Score=287.50 Aligned_cols=224 Identities=22% Similarity=0.345 Sum_probs=179.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
..++|||+|||.++++++|+++|++||.|..|++ .++++|||||+|.+.++|++|++.|++..+.++.|.|.+...
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 4568999999999999999999999999998874 467899999999999999999999999999999999987665
Q ss_pred CCCC-CCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeC-
Q 004350 269 KDNP-SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN- 342 (759)
Q Consensus 269 k~~~-~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~- 342 (759)
+... .......++|||+||+.++|+++|+++|++||.|.++.+ .++++|||||+|.+.++|.+|++.|+|..|.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 5433 123334568999999999999999999999999999876 3467899999999999999999999999999
Q ss_pred ---CcEEEEEecCCCchhhhhhhhhhHHHHHHHHhhhccccCCC--CCCCCC--------CCcccCCCccccccccc-CC
Q 004350 343 ---GKRIKLEPSRPGGARRNLMQQLNQELEQDEARGFRHQVGSP--VTNSPP--------GTWAQFGSPVERNPLHA-FS 408 (759)
Q Consensus 343 ---G~~L~V~~a~~k~~r~~~~~q~~~~~~q~~~~~~~~~~Gsp--~~ns~p--------~~f~~~Gsp~~~~~m~~-~~ 408 (759)
|+.|.|.+++++.++........++..+++.... .+.. +.|.++ ..|..||.+...++|.+ .+
T Consensus 247 ~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~---~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g 323 (562)
T TIGR01628 247 AKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKA---QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKG 323 (562)
T ss_pred cccceeeEeecccChhhhHHHHHhhHHhhhhhhhccc---CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCC
Confidence 9999999998877664433332222222211100 1111 223332 46788999999999887 68
Q ss_pred CCCCCcccCCC
Q 004350 409 KSPGLGTLSPI 419 (759)
Q Consensus 409 rS~~~G~v~~~ 419 (759)
++++||||...
T Consensus 324 ~~~g~gfV~f~ 334 (562)
T TIGR01628 324 VSRGFGFVCFS 334 (562)
T ss_pred CcCCeEEEEeC
Confidence 99999999764
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=8.7e-28 Score=263.06 Aligned_cols=222 Identities=19% Similarity=0.279 Sum_probs=163.6
Q ss_pred cccccCCc---EEEEecCcchhhccceeeeeccCcccCccc----ccccCCCCCCccCCCC-CCCCCCcEEEEcCCCCCC
Q 004350 135 DLFDSGGG---MELEFEPHESLSIGVSKLNISDGIAGTGIA----HYPISNGVGTVAGEHP-YGEHPSRTLFVRNINSNV 206 (759)
Q Consensus 135 dlF~s~G~---v~V~~d~~esa~~g~~kv~f~~~~~~~~~~----~~~l~n~v~~~~g~~~-~~~~~~rtLfVgNLP~~v 206 (759)
++|...|. +.|..|..++..++++++.|.+...+..+. ...+......+....+ ......++|||+|||..+
T Consensus 22 ~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~ 101 (352)
T TIGR01661 22 SLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTM 101 (352)
T ss_pred HHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccC
Confidence 34444443 345555555666666666666654442211 1111111101111111 122346799999999999
Q ss_pred CHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCC--ceeeEeecCCCCCCCC-----
Q 004350 207 EDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKDNPSE----- 274 (759)
Q Consensus 207 teeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g--r~L~V~~a~~k~~~~~----- 274 (759)
++++|+++|++||.|..+.+ ++.++|||||+|.+.++|++|++.|++..+.+ .+|.|.|+........
T Consensus 102 ~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~ 181 (352)
T TIGR01661 102 TQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLS 181 (352)
T ss_pred CHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCc
Confidence 99999999999999988773 45689999999999999999999999998876 5788888743320000
Q ss_pred -----------C--------------------------------------------------------------------
Q 004350 275 -----------K-------------------------------------------------------------------- 275 (759)
Q Consensus 275 -----------~-------------------------------------------------------------------- 275 (759)
.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (352)
T TIGR01661 182 QLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQ 261 (352)
T ss_pred hhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCC
Confidence 0
Q ss_pred ----ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 004350 276 ----DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (759)
Q Consensus 276 ----~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L 346 (759)
.....+|||+|||+++++++|+++|++||.|++|++ ++.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 262 ~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i 341 (352)
T TIGR01661 262 IAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVL 341 (352)
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 000125999999999999999999999999999986 56789999999999999999999999999999999
Q ss_pred EEEecCCCch
Q 004350 347 KLEPSRPGGA 356 (759)
Q Consensus 347 ~V~~a~~k~~ 356 (759)
+|.|+..+..
T Consensus 342 ~V~~~~~~~~ 351 (352)
T TIGR01661 342 QVSFKTNKAY 351 (352)
T ss_pred EEEEccCCCC
Confidence 9999987754
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=8.4e-28 Score=263.19 Aligned_cols=159 Identities=21% Similarity=0.399 Sum_probs=142.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+..|++..|.|++|.|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999874 56799999999999999999999999999999999999997
Q ss_pred CCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeC
Q 004350 268 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (759)
Q Consensus 268 ~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~ 342 (759)
++.. .....+|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred cccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 6543 234568999999999999999999999999998875 3457899999999999999999999999998
Q ss_pred C--cEEEEEecCCCc
Q 004350 343 G--KRIKLEPSRPGG 355 (759)
Q Consensus 343 G--~~L~V~~a~~k~ 355 (759)
| .+|.|+++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 578888886443
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=2.7e-27 Score=258.83 Aligned_cols=163 Identities=23% Similarity=0.421 Sum_probs=145.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
.....++|||+|||+++|+++|+++|++||+|+.|++ +++++|||||+|.++++|++|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 4556899999999999999999999999999998874 56789999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCC
Q 004350 265 FSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRS 339 (759)
Q Consensus 265 ~a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~ 339 (759)
|+.+... .....+|||+|||.++|+++|+++|++||+|+.|++ ++++++||||+|.+.++|++||+.||+.
T Consensus 183 ~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 183 YARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred ccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 9875432 234568999999999999999999999999999875 4566899999999999999999999999
Q ss_pred eeCC--cEEEEEecCCCch
Q 004350 340 DING--KRIKLEPSRPGGA 356 (759)
Q Consensus 340 ~i~G--~~L~V~~a~~k~~ 356 (759)
.+.| +.|+|++++....
T Consensus 259 ~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 259 IPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred ccCCCceeEEEEECCcccc
Confidence 9876 6899999986544
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=256.21 Aligned_cols=237 Identities=20% Similarity=0.347 Sum_probs=195.4
Q ss_pred cccccccCCCCcccccc-cccccCCc---EEEEecCcchhhccceeeeeccCcccCcccccccCCCCCCccCCC--CCCC
Q 004350 118 DDFDLRGLPSQLEDLED-DLFDSGGG---MELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEH--PYGE 191 (759)
Q Consensus 118 de~~v~kl~~~~~dlee-dlF~s~G~---v~V~~d~~esa~~g~~kv~f~~~~~~~~~~~~~l~n~v~~~~g~~--~~~~ 191 (759)
.|.-+.+++.|+.+-|. .+|++.|. ++|++|+..+.+++++||.|.....+.++.. ..|.-....++. -.-.
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik--~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIK--ELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHH--HhhCccccCCCEeEEEEe
Confidence 45678889999988555 99999998 7899999999999999999999877754321 122111111111 1123
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEe------CCCcceEEEEEecCHHHHHHHHHHcccc--ccCCceee
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNK--PLRRRKLD 262 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~-I~~v~~------~gksrGfAFVeF~~~e~A~kAi~~L~g~--~l~gr~L~ 262 (759)
..+++|||+|||.+.+++||.+.|++.++ |++|.+ ..+.||||||+|++..+|..|.++|-.- +++|..+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 46799999999999999999999999987 555542 4589999999999999999999988653 57899999
Q ss_pred EeecCCCCCCCCCcc-CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCee
Q 004350 263 IHFSIPKDNPSEKDV-NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI 341 (759)
Q Consensus 263 V~~a~~k~~~~~~~~-~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i 341 (759)
|.||.|+..+.+... .-+.|||+||+.++|+|.|+++|+.||.|..|+.. +.||||.|.++++|.+|++.|||++|
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHHHHHHhcCcee
Confidence 999999887765533 34679999999999999999999999999999764 67999999999999999999999999
Q ss_pred CCcEEEEEecCCCchhhh
Q 004350 342 NGKRIKLEPSRPGGARRN 359 (759)
Q Consensus 342 ~G~~L~V~~a~~k~~r~~ 359 (759)
+|..|+|.+|+|..+++.
T Consensus 319 dG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 319 DGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred cCceEEEEecCChhhhcc
Confidence 999999999999776553
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=5.8e-26 Score=259.69 Aligned_cols=245 Identities=20% Similarity=0.225 Sum_probs=175.8
Q ss_pred ccCCCccChhHHHhccccccccccCCCCcccccc-cccccCCcEEEEecCcchhhccceeeeeccCcccCcccccccCC-
Q 004350 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISN- 178 (759)
Q Consensus 101 i~NlLp~d~d~~~~~vade~~v~kl~~~~~dlee-dlF~s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~~~~~~~l~n- 178 (759)
++||.++.+++.+..+ |..++.+.. .+....+-+.|+|+..+++..++..+......+...........
T Consensus 7 V~nLp~~~te~~L~~~---------f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 7 VRNLPQDVVEADLVEA---------LIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred EcCCCCCCCHHHHHHH---------HHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 6788887655555554 344555556 55555667889999988888887654321111111100000000
Q ss_pred -CCCCccC-C-CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC-CCcceEEEEEecCHHHHHHHHHHcccc
Q 004350 179 -GVGTVAG-E-HPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQNK 254 (759)
Q Consensus 179 -~v~~~~g-~-~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~-gksrGfAFVeF~~~e~A~kAi~~L~g~ 254 (759)
....... + .........+|||+||++.+|+++|+++|++||+|.+|.+. .+.+++|||+|.+.++|.+|+..|+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~ 157 (481)
T TIGR01649 78 QEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGA 157 (481)
T ss_pred cccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCC
Confidence 0000000 0 00111223589999999999999999999999999999853 333579999999999999999999999
Q ss_pred ccCC--ceeeEeecCCCCC-------CC----------C-----------------------------------------
Q 004350 255 PLRR--RKLDIHFSIPKDN-------PS----------E----------------------------------------- 274 (759)
Q Consensus 255 ~l~g--r~L~V~~a~~k~~-------~~----------~----------------------------------------- 274 (759)
.|.+ +.|+|+|+.++.- .. +
T Consensus 158 ~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (481)
T TIGR01649 158 DIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAG 237 (481)
T ss_pred cccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccc
Confidence 9865 4788888654210 00 0
Q ss_pred ---------------------------------CccCccceEEeccCC-CCcHHHHHHHhhccCCeEEEEecCCCCceEE
Q 004350 275 ---------------------------------KDVNQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKF 320 (759)
Q Consensus 275 ---------------------------------~~~~~~tLfV~NLp~-~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgF 320 (759)
......+|||+||++ .+|+++|+++|+.||.|..|++...++||||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~af 317 (481)
T TIGR01649 238 GDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETAL 317 (481)
T ss_pred cccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEE
Confidence 001235899999998 6999999999999999999998767789999
Q ss_pred EEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 321 IEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 321 VeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
|+|.+.++|.+||+.|||..|.|++|+|.+++..
T Consensus 318 V~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 318 IEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred EEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 9999999999999999999999999999998654
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=1.1e-25 Score=257.29 Aligned_cols=305 Identities=20% Similarity=0.208 Sum_probs=212.6
Q ss_pred CccccccccccCcchhhhhhh--cCCccceeccCcccCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCcccccc--
Q 004350 25 PKKVGSGAWGISFGTEANNAS--NDASLFSSSLPVLPHEKLNFADSEHHDQSVDDSSPTLNKIDLENESNGPLAGVET-- 100 (759)
Q Consensus 25 ~~~~~~~tf~~p~~a~~a~~~--~d~s~F~grl~~i~~~k~~~~~~~~~~~~~~~~~~~~kk~~~e~e~~~~~ee~e~-- 100 (759)
.|..|+..|..+|+|.+|+.. +++..+.||-+.|-.++.+...... +. + .........-.
T Consensus 37 ~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~-----~~---------~--~~~~~~~~~~~v~ 100 (481)
T TIGR01649 37 GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDG-----NS---------D--FDSAGPNKVLRVI 100 (481)
T ss_pred CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCC-----CC---------c--ccCCCCCceEEEE
Confidence 467899999999999999986 4678899998877665432110000 00 0 00001111222
Q ss_pred ccCCCccChhHHHhccccccccccCCCCcccccc-cccccCC--cEEEEecCcchhhccceeeeeccCcccC--------
Q 004350 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGG--GMELEFEPHESLSIGVSKLNISDGIAGT-------- 169 (759)
Q Consensus 101 i~NlLp~d~d~~~~~vade~~v~kl~~~~~dlee-dlF~s~G--~v~V~~d~~esa~~g~~kv~f~~~~~~~-------- 169 (759)
|.|+.+..+++.+..++ ..++++.. .++...+ ...|+|+..+.+.+++..++-.+.....
T Consensus 101 v~nl~~~vt~~~L~~~F---------~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 101 VENPMYPITLDVLYQIF---------NPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred EcCCCCCCCHHHHHHHH---------hccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 78888665556555554 44555666 5665544 4789999999888876655533221000
Q ss_pred ------------cccccc---cC---------------C-------------CCCCc------------cC---------
Q 004350 170 ------------GIAHYP---IS---------------N-------------GVGTV------------AG--------- 185 (759)
Q Consensus 170 ------------~~~~~~---l~---------------n-------------~v~~~------------~g--------- 185 (759)
+...|- ++ . +-+.. .+
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 000000 00 0 00000 00
Q ss_pred ---------------CCCCCCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHH
Q 004350 186 ---------------EHPYGEHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMR 249 (759)
Q Consensus 186 ---------------~~~~~~~~~rtLfVgNLP~-~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~ 249 (759)
..+....+.++|||+|||+ .+|+++|+++|++||.|.+|++....+|||||+|.+.++|++|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALT 331 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 0001123668999999998 699999999999999999998754568999999999999999999
Q ss_pred HccccccCCceeeEeecCCCCCCCC------------C---------------------ccCccceEEeccCCCCcHHHH
Q 004350 250 ALQNKPLRRRKLDIHFSIPKDNPSE------------K---------------------DVNQGTLVVFNLDASVSNDDL 296 (759)
Q Consensus 250 ~L~g~~l~gr~L~V~~a~~k~~~~~------------~---------------------~~~~~tLfV~NLp~~~TeedL 296 (759)
.|++..|.|++|+|.++..+..... + .....+|||+|||.++|+++|
T Consensus 332 ~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L 411 (481)
T TIGR01649 332 HLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDL 411 (481)
T ss_pred HhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHH
Confidence 9999999999999998754311000 0 012358999999999999999
Q ss_pred HHHhhccCC--eEEEEecCC---CCceEEEEECCHHHHHHHHHHhCCCeeCCcE------EEEEecCCC
Q 004350 297 RQIFGAYGE--VKEIRETPH---KRHHKFIEFYDVRAAEAALRALNRSDINGKR------IKLEPSRPG 354 (759)
Q Consensus 297 r~~Fs~fG~--I~~v~i~~~---s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~------L~V~~a~~k 354 (759)
+++|+.||. |+.|++... ++++|||+|.+.++|.+||..||++.|+++. |+|.+++++
T Consensus 412 ~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 412 KELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999998 888877433 3789999999999999999999999999985 999999875
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=1.4e-25 Score=257.35 Aligned_cols=231 Identities=22% Similarity=0.333 Sum_probs=170.2
Q ss_pred ccCCCccChhHHHhccccccccccCCCCcccccccccccCCcEEEEecCcchhhccceeeeeccCcccCccc----cccc
Q 004350 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIA----HYPI 176 (759)
Q Consensus 101 i~NlLp~d~d~~~~~vade~~v~kl~~~~~dleedlF~s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~~~~----~~~l 176 (759)
|+||.++.+++.+..++.+++. +.+ ++|..| .++.++++.+|.|.+.+.+..+. .+.+
T Consensus 63 VgnLp~~~tEd~L~~~F~~~G~---------I~~--------vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i 124 (578)
T TIGR01648 63 VGKIPRDLYEDELVPLFEKAGP---------IYE--------LRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEI 124 (578)
T ss_pred eCCCCCCCCHHHHHHHHHhhCC---------EEE--------EEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCee
Confidence 8888887656655555444432 111 344555 45556666666666554443221 1111
Q ss_pred CCCCCCccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEe------CCCcceEEEEEecCHHHHHHHHH
Q 004350 177 SNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYT------ACKHRGFVMISYYDIRAARTAMR 249 (759)
Q Consensus 177 ~n~v~~~~g~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~-I~~v~~------~gksrGfAFVeF~~~e~A~kAi~ 249 (759)
.++.. + . .......++|||+|||.++++++|+++|++++. +..+.+ .++++|||||+|.+.++|.+|++
T Consensus 125 ~~Gr~-l-~--V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Air 200 (578)
T TIGR01648 125 RPGRL-L-G--VCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARR 200 (578)
T ss_pred cCCcc-c-c--ccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHH
Confidence 11100 0 0 011234689999999999999999999999964 333322 34689999999999999999999
Q ss_pred Hccc--cccCCceeeEeecCCCCCCCCCc-cCccceEEeccCCCCcHHHHHHHhhcc--CCeEEEEecCCCCceEEEEEC
Q 004350 250 ALQN--KPLRRRKLDIHFSIPKDNPSEKD-VNQGTLVVFNLDASVSNDDLRQIFGAY--GEVKEIRETPHKRHHKFIEFY 324 (759)
Q Consensus 250 ~L~g--~~l~gr~L~V~~a~~k~~~~~~~-~~~~tLfV~NLp~~~TeedLr~~Fs~f--G~I~~v~i~~~s~GfgFVeF~ 324 (759)
.|.. ..+.|+.|.|.|+.++....+.. ...++|||+||+.++|+++|+++|++| |+|+.|++. ++||||+|.
T Consensus 201 kL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~ 277 (578)
T TIGR01648 201 KLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFE 277 (578)
T ss_pred HhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeC
Confidence 8865 35789999999998876543322 234689999999999999999999999 999999764 679999999
Q ss_pred CHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 325 DVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 325 ~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
+.++|++|++.||+.+|+|+.|+|.++++...
T Consensus 278 s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 278 DREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 99999999999999999999999999988644
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=3.7e-25 Score=254.42 Aligned_cols=162 Identities=19% Similarity=0.385 Sum_probs=142.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
..++|||+|||+++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4689999999999999999999999999999874 57899999999999999999999999999999999998754
Q ss_pred CCCCCC-------CCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHH
Q 004350 268 PKDNPS-------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRA 335 (759)
Q Consensus 268 ~k~~~~-------~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~ 335 (759)
...... .......+|||+||++++++++|+++|++||.|++|++ +++++|||||+|.+.++|.+||+.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 321110 11123468999999999999999999999999999986 346789999999999999999999
Q ss_pred hCCCeeCCcEEEEEecCCC
Q 004350 336 LNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 336 Lng~~i~G~~L~V~~a~~k 354 (759)
||+..|+|+.|+|.++.+.
T Consensus 266 mNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred hCCCeeCCeEEEEEecCCC
Confidence 9999999999999988754
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.7e-25 Score=224.89 Aligned_cols=164 Identities=20% Similarity=0.411 Sum_probs=148.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
.--+||+.|...++-++||+.|.+||+|.++++ ++++|||+||.|.+.++|++||..|+|+.|.+|.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 568999999999999999999999999988773 789999999999999999999999999999999999999976
Q ss_pred CCCCC------------CCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHh
Q 004350 269 KDNPS------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL 336 (759)
Q Consensus 269 k~~~~------------~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~L 336 (759)
|.... ......+++||+|++..+||++||+.|++||.|.+||+.+ -+||+||+|.+.|+|.+||..|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-~qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-DQGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-ccceEEEEecchhhHHHHHHHh
Confidence 64221 1223467999999999999999999999999999999974 4699999999999999999999
Q ss_pred CCCeeCCcEEEEEecCCCchhh
Q 004350 337 NRSDINGKRIKLEPSRPGGARR 358 (759)
Q Consensus 337 ng~~i~G~~L~V~~a~~k~~r~ 358 (759)
|+.+|.|+.+++.|.+......
T Consensus 221 Nntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 221 NNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred cCceeCceEEEEeccccCCCCC
Confidence 9999999999999999876654
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.6e-24 Score=218.76 Aligned_cols=238 Identities=18% Similarity=0.287 Sum_probs=190.2
Q ss_pred ccCCCccChhHHHhccccccccccCCCCcccccccccccCCcEEEEecCcchhhccceeeeeccCcccCc----cccccc
Q 004350 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTG----IAHYPI 176 (759)
Q Consensus 101 i~NlLp~d~d~~~~~vade~~v~kl~~~~~dleedlF~s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~~----~~~~~l 176 (759)
|-|.||.. +.+-+++.||.+++|+|. |.+..|..++++.++.+++|.+...+.. +...++
T Consensus 45 IvNYLPQ~--------MTqdE~rSLF~SiGeiES--------cKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL 108 (360)
T KOG0145|consen 45 IVNYLPQN--------MTQDELRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL 108 (360)
T ss_pred eeeecccc--------cCHHHHHHHhhcccceee--------eeeeeccccccccccceeeecChHHHHHHHhhhcceee
Confidence 99999987 666778888888888775 3445677889999999999988765532 222344
Q ss_pred CCCCCCccCCCC-CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHH
Q 004350 177 SNGVGTVAGEHP-YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRA 250 (759)
Q Consensus 177 ~n~v~~~~g~~~-~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~ 250 (759)
.+...+++-..+ .+.....+|||.+||..+|..||.++|++||.|..-+ +++.+||.+||.|....+|+.||+.
T Consensus 109 Q~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 109 QNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred ccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 444333333333 3445678999999999999999999999999986544 5789999999999999999999999
Q ss_pred ccccccCC--ceeeEeecCCCCCC-------------CC-----------------------------------------
Q 004350 251 LQNKPLRR--RKLDIHFSIPKDNP-------------SE----------------------------------------- 274 (759)
Q Consensus 251 L~g~~l~g--r~L~V~~a~~k~~~-------------~~----------------------------------------- 274 (759)
|+|.+-.| .+|.|+|+...... ..
T Consensus 189 lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAG 268 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeee
Confidence 99988765 48999997433110 00
Q ss_pred -----CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCc
Q 004350 275 -----KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGK 344 (759)
Q Consensus 275 -----~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~ 344 (759)
......+|||.||.++++|.-|+++|.+||.|..|++ +.+.+|||||.+.+.++|..||..|||+.+++|
T Consensus 269 ~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 269 VNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred eccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 0011248999999999999999999999999999876 467899999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004350 345 RIKLEPSRPG 354 (759)
Q Consensus 345 ~L~V~~a~~k 354 (759)
.|.|.+...+
T Consensus 349 vLQVsFKtnk 358 (360)
T KOG0145|consen 349 VLQVSFKTNK 358 (360)
T ss_pred EEEEEEecCC
Confidence 9999987543
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=1.2e-23 Score=238.81 Aligned_cols=163 Identities=25% Similarity=0.445 Sum_probs=143.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
.++..++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+. |+|..+.|++|.|+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3566899999999999999999999999999999884 56789999999999999999997 99999999999999
Q ss_pred ecCCCCCCCC--------CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHH
Q 004350 265 FSIPKDNPSE--------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEA 331 (759)
Q Consensus 265 ~a~~k~~~~~--------~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~ 331 (759)
++........ ......+|||+|||..+|+++|+++|++||.|..|++. ++++|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8754332211 11224789999999999999999999999999999763 4678999999999999999
Q ss_pred HHHHhCCCeeCCcEEEEEecCC
Q 004350 332 ALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 332 Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
|++.|+|..|.|+.|+|.++..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999874
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=4.2e-24 Score=215.71 Aligned_cols=159 Identities=25% Similarity=0.427 Sum_probs=144.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
....++|.|.-||.++|++|||.+|...|+|+.|+ +++.+.||+||.|.++++|++|+..|+|.++..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45568999999999999999999999999999997 5889999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEECCHHHHHHHHHHhCCCe
Q 004350 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSD 340 (759)
Q Consensus 266 a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~-----i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~ 340 (759)
+.|.. ..+...+|||.+||..+|..+|.++|++||.|..-+ +++.++|.|||+|+.+.+|+.||+.|||..
T Consensus 118 ARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 98644 345567899999999999999999999999987765 478899999999999999999999999998
Q ss_pred eCC--cEEEEEecCC
Q 004350 341 ING--KRIKLEPSRP 353 (759)
Q Consensus 341 i~G--~~L~V~~a~~ 353 (759)
-.| ..|.|+++.-
T Consensus 194 P~g~tepItVKFann 208 (360)
T KOG0145|consen 194 PSGCTEPITVKFANN 208 (360)
T ss_pred CCCCCCCeEEEecCC
Confidence 877 5799999864
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.1e-22 Score=215.63 Aligned_cols=163 Identities=23% Similarity=0.445 Sum_probs=143.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccc-cC--CceeeE
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKP-LR--RRKLDI 263 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~-l~--gr~L~V 263 (759)
.+.-+|||+.||..++|+|||++|++||.|.+|. .++.++|||||.|++.++|.+|+.+|++.+ |. ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4457999999999999999999999999999886 467899999999999999999999999965 54 468999
Q ss_pred eecCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCC
Q 004350 264 HFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRS 339 (759)
Q Consensus 264 ~~a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~ 339 (759)
+|+....+. -....+|||+-|+..+||.+++++|++||.|++|++ .+.+||++||.|.+.|.|..||++|||.
T Consensus 112 k~Ad~E~er---~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERER---IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhc---cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 998654432 245679999999999999999999999999999976 5678999999999999999999999998
Q ss_pred -eeCC--cEEEEEecCCCchh
Q 004350 340 -DING--KRIKLEPSRPGGAR 357 (759)
Q Consensus 340 -~i~G--~~L~V~~a~~k~~r 357 (759)
.+.| ..|.|+||.+++++
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred eeeccCCCceEEEecccCCCc
Confidence 5777 57999999887665
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=6.6e-22 Score=227.33 Aligned_cols=251 Identities=17% Similarity=0.261 Sum_probs=174.2
Q ss_pred ccCCCccChhHHHhcccccc----ccccCCCCcccccc-cccccCCcEEEEecCcchhhccceeee---eccCcccC-cc
Q 004350 101 IGSLLPDDENDLLAGLVDDF----DLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLN---ISDGIAGT-GI 171 (759)
Q Consensus 101 i~NlLp~d~d~~~~~vade~----~v~kl~~~~~dlee-dlF~s~G~v~V~~d~~esa~~g~~kv~---f~~~~~~~-~~ 171 (759)
++||.+..+++.+..++.++ ++.. ..+...+.. .+-...|-++|+|...+.+..++. ++ |....+.. ..
T Consensus 180 VgnLp~~~t~~~l~~~F~~~~~~~~~~~-~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 180 VGGIPPEFVEEAVVDFFNDLMIATGYHK-AEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIYSNVFLKIRRP 257 (509)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCCC-CCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEeeCceeEecCc
Confidence 99999988777777665543 2211 011223333 333445668999999988888764 21 11100000 00
Q ss_pred cccccCC-C---CCC------cc-C----CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcc
Q 004350 172 AHYPISN-G---VGT------VA-G----EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHR 231 (759)
Q Consensus 172 ~~~~l~n-~---v~~------~~-g----~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksr 231 (759)
..+.... . ... .. . .........++|||+|||+.+++++|+++|++||.|..+.+ +++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~ 337 (509)
T TIGR01642 258 HDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSK 337 (509)
T ss_pred cccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcC
Confidence 0000000 0 000 00 0 00112234689999999999999999999999999988763 57789
Q ss_pred eEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCCCCC------------------------CccCccceEEecc
Q 004350 232 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSE------------------------KDVNQGTLVVFNL 287 (759)
Q Consensus 232 GfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~~~~------------------------~~~~~~tLfV~NL 287 (759)
|||||+|.+.++|.+|+..|+|..|.|++|.|+++........ ......+|+|.||
T Consensus 338 g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~ 417 (509)
T TIGR01642 338 GYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNL 417 (509)
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccC
Confidence 9999999999999999999999999999999999754321100 0113467899999
Q ss_pred CCC--C--------cHHHHHHHhhccCCeEEEEecC--------CCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 288 DAS--V--------SNDDLRQIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 288 p~~--~--------TeedLr~~Fs~fG~I~~v~i~~--------~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
... + ..++|+++|++||.|+.|.+.. ...|++||+|.++++|++|+.+|||..|+|+.|.|.
T Consensus 418 ~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~ 497 (509)
T TIGR01642 418 VTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAA 497 (509)
T ss_pred CchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 642 1 2368999999999999998742 236899999999999999999999999999999999
Q ss_pred ecCC
Q 004350 350 PSRP 353 (759)
Q Consensus 350 ~a~~ 353 (759)
|...
T Consensus 498 ~~~~ 501 (509)
T TIGR01642 498 FYGE 501 (509)
T ss_pred EeCH
Confidence 8753
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=2.3e-22 Score=231.17 Aligned_cols=164 Identities=18% Similarity=0.302 Sum_probs=137.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEeCCCcceEEEEEecCHHHHHHHHHHcccccc
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQY------------GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 256 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~f------------G~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l 256 (759)
...+..++|||+|||+++|+++|+++|.++ +.|..+. .++.+|||||+|.+.++|.+||. |+|..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~-~~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN-INKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE-ECCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 345677999999999999999999999975 3344444 45789999999999999999995 999999
Q ss_pred CCceeeEeecCCCCC------------CC-------------CCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe
Q 004350 257 RRRKLDIHFSIPKDN------------PS-------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE 311 (759)
Q Consensus 257 ~gr~L~V~~a~~k~~------------~~-------------~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i 311 (759)
.|++|.|........ +. .......+|||+|||..+|+++|+++|+.||.|+.+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 999999975321110 00 00112368999999999999999999999999998875
Q ss_pred -----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 312 -----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 312 -----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
++.++|||||+|.+.++|.+|++.|+|..|+|++|.|.++..+
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 4668999999999999999999999999999999999998654
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=1.5e-22 Score=232.69 Aligned_cols=178 Identities=22% Similarity=0.322 Sum_probs=150.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccC-CceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~-gr~L~V~~a~ 267 (759)
..++|||+|||++++|++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+. ++.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 4689999999999999999999999999999874 5789999999999999999999999999885 7888887653
Q ss_pred CCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCC-eEEEEe------cCCCCceEEEEECCHHHHHHHHHHhCC--
Q 004350 268 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALRALNR-- 338 (759)
Q Consensus 268 ~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~-I~~v~i------~~~s~GfgFVeF~~~e~A~~Al~~Lng-- 338 (759)
..++|||+|||.++|+++|++.|++++. ++++.+ ..+++|||||+|.++++|.+|++.|+.
T Consensus 137 ----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 137 ----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 3568999999999999999999999863 444332 235689999999999999999998864
Q ss_pred CeeCCcEEEEEecCCCch---------hhhhhhhhhHHHHHHHHhhhcccc
Q 004350 339 SDINGKRIKLEPSRPGGA---------RRNLMQQLNQELEQDEARGFRHQV 380 (759)
Q Consensus 339 ~~i~G~~L~V~~a~~k~~---------r~~~~~q~~~~~~q~~~~~~~~~~ 380 (759)
..+.|+.|+|.|+.+... +..++.++...+++++++.+|..+
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f 257 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEF 257 (578)
T ss_pred eEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 368899999999987542 234677888888888888776555
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.88 E-value=8.1e-22 Score=223.76 Aligned_cols=160 Identities=26% Similarity=0.394 Sum_probs=136.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|.+|+..|+|..|.|++|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 689999999999999999999999999998874 357899999999999999999999999999999999999531
Q ss_pred CCCC-----------------------------------C------------------------------C---------
Q 004350 269 KDNP-----------------------------------S------------------------------E--------- 274 (759)
Q Consensus 269 k~~~-----------------------------------~------------------------------~--------- 274 (759)
.... . .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 1000 0 0
Q ss_pred ------------CccCccceEEeccCCCCc----------HHHHHHHhhccCCeEEEEec-CCCCceEEEEECCHHHHHH
Q 004350 275 ------------KDVNQGTLVVFNLDASVS----------NDDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEA 331 (759)
Q Consensus 275 ------------~~~~~~tLfV~NLp~~~T----------eedLr~~Fs~fG~I~~v~i~-~~s~GfgFVeF~~~e~A~~ 331 (759)
......+|+|.||-...+ .+||++.|++||.|++|.+. +...|++||+|.++++|.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 002235788999954443 36899999999999999885 7778999999999999999
Q ss_pred HHHHhCCCeeCCcEEEEEecCC
Q 004350 332 ALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 332 Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
|++.|||..++|+.|.+.+...
T Consensus 426 A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 426 AFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHhcCcccCCeEEEEEEEcH
Confidence 9999999999999999998754
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.5e-21 Score=213.67 Aligned_cols=167 Identities=21% Similarity=0.399 Sum_probs=143.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC----CCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~----gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
.-+|.|+|||+.+.+.+|+.+|+.||.|..|.++ ++-.|||||+|.+..+|.+|++.+++..|.|++|.|.||.++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 4689999999999999999999999999999853 456799999999999999999999999999999999998665
Q ss_pred CCCC-----------------------------------------CC--c---------------------c--------
Q 004350 270 DNPS-----------------------------------------EK--D---------------------V-------- 277 (759)
Q Consensus 270 ~~~~-----------------------------------------~~--~---------------------~-------- 277 (759)
+... ++ + .
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 2100 00 0 0
Q ss_pred --------------CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHh--
Q 004350 278 --------------NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRAL-- 336 (759)
Q Consensus 278 --------------~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~L-- 336 (759)
...+|||+|||+++|+++|.++|++||+|..+.+ +++++|.|||.|.+..+|++||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 0148999999999999999999999999999864 6789999999999999999999977
Q ss_pred ---CC-CeeCCcEEEEEecCCCchhhhh
Q 004350 337 ---NR-SDINGKRIKLEPSRPGGARRNL 360 (759)
Q Consensus 337 ---ng-~~i~G~~L~V~~a~~k~~r~~~ 360 (759)
.| ..|+|+.|+|.++-.+.+....
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAADM 384 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHHH
Confidence 24 5789999999999887766543
No 23
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.8e-21 Score=209.37 Aligned_cols=213 Identities=20% Similarity=0.311 Sum_probs=172.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccC-CceeeEee
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHF 265 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~-gr~L~V~~ 265 (759)
...+.|||+.||.++.|+||.-+|++.|+|-+++ .++.+||||||.|.+.++|++|++.|++..|+ |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4468999999999999999999999999999988 36889999999999999999999999999884 89999998
Q ss_pred cCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCC-eEEEEe------cCCCCceEEEEECCHHHHHHHHHHh-C
Q 004350 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALRAL-N 337 (759)
Q Consensus 266 a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~-I~~v~i------~~~s~GfgFVeF~~~e~A~~Al~~L-n 337 (759)
+. ..+.|||+|+|.+.++++|.+.|++.++ |+.|-+ ..+.||||||+|+++..|..|.++| +
T Consensus 161 Sv----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 161 SV----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred ee----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 74 4578999999999999999999999864 555543 3467999999999999999999888 3
Q ss_pred CC-eeCCcEEEEEecCCCch---------hhhhhhhhhHHHHHHHHhhhccccCCCCCCCCCCCcccCCCcccccccccC
Q 004350 338 RS-DINGKRIKLEPSRPGGA---------RRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAF 407 (759)
Q Consensus 338 g~-~i~G~~L~V~~a~~k~~---------r~~~~~q~~~~~~q~~~~~~~~~~Gsp~~ns~p~~f~~~Gsp~~~~~m~~~ 407 (759)
|+ ++.|+.+.|.||.|..+ +..+++++...++++.+...| ..||...+.+.+
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F---------------~~~G~veRVkk~--- 292 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLF---------------NEFGKVERVKKP--- 292 (506)
T ss_pred CceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHH---------------HhccceEEeecc---
Confidence 43 78999999999998654 234788899999999998664 445666666555
Q ss_pred CCCCCCcccCCCCC-CCccccccccCCCC
Q 004350 408 SKSPGLGTLSPINS-NPLHAFSKSTGLAT 435 (759)
Q Consensus 408 ~rS~~~G~v~~~~~-~~~~~~~~~~g~~~ 435 (759)
+.++||+...- ..+.|+....|-..
T Consensus 293 ---rDYaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 293 ---RDYAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred ---cceeEEeecchHHHHHHHHHhcCcee
Confidence 55888865421 13344434444333
No 24
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.86 E-value=1.2e-21 Score=189.77 Aligned_cols=163 Identities=23% Similarity=0.313 Sum_probs=143.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
....||||+||+..++++-|.++|-+.|.|.+++ ++...+|||||+|.++++|+-|++-|+..+|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3468999999999999999999999999999998 45679999999999999999999999999999999999987
Q ss_pred CCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEE------EecCCCCceEEEEECCHHHHHHHHHHhCCCe
Q 004350 267 IPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI------RETPHKRHHKFIEFYDVRAAEAALRALNRSD 340 (759)
Q Consensus 267 ~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v------~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~ 340 (759)
... ...-....+|||+||++.+++..|.++|+.||.+... ..++.+++||||.|++.+.+.+|+..|||..
T Consensus 87 s~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 87 SAH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ccc---cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 521 1222234789999999999999999999999988764 1367889999999999999999999999999
Q ss_pred eCCcEEEEEecCCCchh
Q 004350 341 INGKRIKLEPSRPGGAR 357 (759)
Q Consensus 341 i~G~~L~V~~a~~k~~r 357 (759)
+..++|.|.++..++.+
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 99999999999765543
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.9e-21 Score=210.93 Aligned_cols=277 Identities=16% Similarity=0.297 Sum_probs=199.7
Q ss_pred cccccCCc---EEEEecCcchhhccceeeeeccCcccCccc---ccccCCCCCCccCCCCCCCCCCcEEEEcCCCCCCCH
Q 004350 135 DLFDSGGG---MELEFEPHESLSIGVSKLNISDGIAGTGIA---HYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVED 208 (759)
Q Consensus 135 dlF~s~G~---v~V~~d~~esa~~g~~kv~f~~~~~~~~~~---~~~l~n~v~~~~g~~~~~~~~~rtLfVgNLP~~vte 208 (759)
++|+..|. ++|-.|. + ..++++++|.+...+..+. .+...++. . -......++...|||+||+.+++.
T Consensus 17 ~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~--~-~rim~s~rd~~~~~i~nl~~~~~~ 90 (369)
T KOG0123|consen 17 DKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGK--P-IRIMWSQRDPSLVFIKNLDESIDN 90 (369)
T ss_pred HHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCc--E-EEeehhccCCceeeecCCCcccCc
Confidence 44555444 4455554 2 6677777766664443221 11111110 0 001123444455999999999999
Q ss_pred HHHHHHhhccCCeEEEEe---CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCCCCCC----ccCccc
Q 004350 209 LELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEK----DVNQGT 281 (759)
Q Consensus 209 eeLr~lFs~fG~I~~v~~---~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~~~~~----~~~~~t 281 (759)
.+|.++|+.||+|..|++ ..-++|| ||+|.++++|++|+..++|..+.+++|+|.....+...... ......
T Consensus 91 ~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~ 169 (369)
T KOG0123|consen 91 KSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTN 169 (369)
T ss_pred HHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhh
Confidence 999999999999999984 2238999 99999999999999999999999999999887665543322 123457
Q ss_pred eEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCchh
Q 004350 282 LVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 357 (759)
Q Consensus 282 LfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~r 357 (759)
++|+|++.+++++.|...|..||.|.++.+ .+++++|+||+|+++++|..|++.|++..++++.+.|..+..+.++
T Consensus 170 v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~ 249 (369)
T KOG0123|consen 170 VYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSER 249 (369)
T ss_pred hheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhh
Confidence 999999999999999999999999999975 3557899999999999999999999999999999999999887666
Q ss_pred hhhhhhhhHHHHHHHHhhhccccCCCCCCCC--------CCCcccCCCccccccccc-CCCCCCCcccCCC
Q 004350 358 RNLMQQLNQELEQDEARGFRHQVGSPVTNSP--------PGTWAQFGSPVERNPLHA-FSKSPGLGTLSPI 419 (759)
Q Consensus 358 ~~~~~q~~~~~~q~~~~~~~~~~Gsp~~ns~--------p~~f~~~Gsp~~~~~m~~-~~rS~~~G~v~~~ 419 (759)
.....+........+...+ ......+.|.+ -..|..+|.++..++|.+ .+++.++|||+..
T Consensus 250 ~~~l~~~~~~~~~~~~~~~-~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs 319 (369)
T KOG0123|consen 250 EAELKRKFEQEFAKRSVSL-QGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFS 319 (369)
T ss_pred HHHHhhhhHhhhhhccccc-cccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcC
Confidence 5544433222222221111 01111122222 256788999999988887 9999999999754
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=5.9e-21 Score=210.31 Aligned_cols=196 Identities=20% Similarity=0.353 Sum_probs=163.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~---~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~ 271 (759)
..|||+ +++|+..|+++|+++|.|..++ ... +-|||||.|.++++|++|+.+++...++|++++|-|+.....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 368999 8999999999999999988876 244 999999999999999999999999999999999999853222
Q ss_pred CCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec---CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 004350 272 PSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 348 (759)
Q Consensus 272 ~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~---~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V 348 (759)
.|||+||+++++..+|.++|+.||+|.+|++. ..++|| ||+|+++++|++|++.|||..+.|++|.|
T Consensus 78 ---------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 78 ---------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred ---------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 29999999999999999999999999999863 237899 99999999999999999999999999999
Q ss_pred EecCCCchhhhhhhh------------hhHHHHHHHHhhhccccCCCCCCCCCCCcccCCCccccccccc-CCCCCCCcc
Q 004350 349 EPSRPGGARRNLMQQ------------LNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA-FSKSPGLGT 415 (759)
Q Consensus 349 ~~a~~k~~r~~~~~q------------~~~~~~q~~~~~~~~~~Gsp~~ns~p~~f~~~Gsp~~~~~m~~-~~rS~~~G~ 415 (759)
....++.++...... ...+.+++.+. ..|..+|.+....+|.+ .+.++++||
T Consensus 148 g~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~---------------~~f~~~g~i~s~~v~~~~~g~~~~~gf 212 (369)
T KOG0123|consen 148 GLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELK---------------DLFSAYGSITSVAVMRDSIGKSKGFGF 212 (369)
T ss_pred eeccchhhhcccccchhhhhhhhheeccccccchHHHH---------------HhhcccCcceEEEEeecCCCCCCCccc
Confidence 999887776533222 11111122222 46778888888888887 777999999
Q ss_pred cCCC
Q 004350 416 LSPI 419 (759)
Q Consensus 416 v~~~ 419 (759)
|..-
T Consensus 213 v~f~ 216 (369)
T KOG0123|consen 213 VNFE 216 (369)
T ss_pred eeec
Confidence 9764
No 27
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=4.1e-21 Score=197.25 Aligned_cols=150 Identities=29% Similarity=0.437 Sum_probs=138.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCCCCC
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSE 274 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~~~~ 274 (759)
-+|||+|||..+++.+|+.+|++||+|.+|.+- |.||||..++...|+.||+.|++.+|+|..|.|+-+..|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV---KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee---cccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 379999999999999999999999999999853 6799999999999999999999999999999999886542
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
....+|+|+||.+.++.++|+..|++||.|.++++. ++|+||.|+-.++|..|++.|++++++|++++|.++..+
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 245789999999999999999999999999999985 689999999999999999999999999999999998765
Q ss_pred ch
Q 004350 355 GA 356 (759)
Q Consensus 355 ~~ 356 (759)
-.
T Consensus 151 lr 152 (346)
T KOG0109|consen 151 LR 152 (346)
T ss_pred cc
Confidence 43
No 28
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.83 E-value=1.6e-21 Score=174.89 Aligned_cols=45 Identities=60% Similarity=1.030 Sum_probs=44.3
Q ss_pred ceeEEeeccCCccCHHHHHHHHhhcCCCcccEEeeccccCCCCCc
Q 004350 712 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKVPQLW 756 (759)
Q Consensus 712 rtt~m~~nipn~~~~~~l~~~~~~~~~~~ydf~ylp~d~~~~~n~ 756 (759)
||||||||||||||++||+++||++|+|+||||||||||+++||.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~ 45 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNL 45 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCce
Confidence 899999999999999999999999999999999999999999996
No 29
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=4e-20 Score=202.67 Aligned_cols=162 Identities=22% Similarity=0.366 Sum_probs=143.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
.||||++||+.++.++|.++|+.+|.|..+++ ...+|||+||.|.-.+++++|+....+..|.|+.|.|..+.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999873 3468999999999999999999999999999999999988655
Q ss_pred CCCCC--------------------C--ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec----CCCCceEEEEE
Q 004350 270 DNPSE--------------------K--DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEF 323 (759)
Q Consensus 270 ~~~~~--------------------~--~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~----~~s~GfgFVeF 323 (759)
..... . +.....|+|+|||+.+.+.+|+.+|+.||.|.+|.|. ++-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 32210 1 1125689999999999999999999999999999874 34469999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 324 YDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 324 ~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
.+..+|.+||+.+|+..|+|+.|-|.||-++..
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999999999999999999988754
No 30
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=9.8e-20 Score=195.23 Aligned_cols=235 Identities=20% Similarity=0.331 Sum_probs=174.8
Q ss_pred cccCCCCcccccc-cccccCCc---EEEEecCcchhhccceeeeeccCcccCcc----cccccCCCC---CCccCCCCCC
Q 004350 122 LRGLPSQLEDLED-DLFDSGGG---MELEFEPHESLSIGVSKLNISDGIAGTGI----AHYPISNGV---GTVAGEHPYG 190 (759)
Q Consensus 122 v~kl~~~~~dlee-dlF~s~G~---v~V~~d~~esa~~g~~kv~f~~~~~~~~~----~~~~l~n~v---~~~~g~~~~~ 190 (759)
|..+++...|-+- .+|+..|. +-|..|+.+.+.+|.-|+.|.....+.++ ...+...+. ..+.......
T Consensus 39 VgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~ 118 (510)
T KOG0144|consen 39 VGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGER 118 (510)
T ss_pred eccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhh
Confidence 3344444444333 56666665 34666777778888888887766555432 112222221 0111111111
Q ss_pred C--CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHcccc-ccCC--cee
Q 004350 191 E--HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNK-PLRR--RKL 261 (759)
Q Consensus 191 ~--~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~-~l~g--r~L 261 (759)
+ ...++|||+-|+..+||.|++++|++||.|++|++ .+.+||||||.|.+.+.|..||++|++. .++| .+|
T Consensus 119 er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PL 198 (510)
T KOG0144|consen 119 ERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPL 198 (510)
T ss_pred hccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCce
Confidence 2 24789999999999999999999999999999984 4679999999999999999999999996 4554 699
Q ss_pred eEeecCCCCCCCC-------------------------------------------------------------------
Q 004350 262 DIHFSIPKDNPSE------------------------------------------------------------------- 274 (759)
Q Consensus 262 ~V~~a~~k~~~~~------------------------------------------------------------------- 274 (759)
.|+|+.+++....
T Consensus 199 VVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~ 278 (510)
T KOG0144|consen 199 VVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAA 278 (510)
T ss_pred EEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHH
Confidence 9999866532100
Q ss_pred --------------------------------------------------------------------------------
Q 004350 275 -------------------------------------------------------------------------------- 274 (759)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (759)
T Consensus 279 ~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~s 358 (510)
T KOG0144|consen 279 ALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTS 358 (510)
T ss_pred HhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccC
Confidence
Q ss_pred -------------------------------------------------------------CccCccceEEeccCCCCcH
Q 004350 275 -------------------------------------------------------------KDVNQGTLVVFNLDASVSN 293 (759)
Q Consensus 275 -------------------------------------------------------------~~~~~~tLfV~NLp~~~Te 293 (759)
+.....+|||.+||-+.-+
T Consensus 359 p~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgd 438 (510)
T KOG0144|consen 359 PVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGD 438 (510)
T ss_pred cccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhh
Confidence 0000138999999999999
Q ss_pred HHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 294 DDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 294 edLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
.+|-..|.+||.|++.++ ++-++.|+||.|++..+|.+||..|||..|+.++|+|.+.+.+..
T Consensus 439 q~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 439 QDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 999999999999998864 677899999999999999999999999999999999998876643
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.78 E-value=8e-20 Score=201.66 Aligned_cols=165 Identities=22% Similarity=0.359 Sum_probs=143.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
..++..+++|+-.|+..++..+|.++|+.+|+|.+|+ .+.+++|.|||+|.|.+....|+. |.|+.+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 4567889999999999999999999999999999987 367899999999999999999996 9999999999999
Q ss_pred eecCCCCCCCCC----------ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHH
Q 004350 264 HFSIPKDNPSEK----------DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRA 328 (759)
Q Consensus 264 ~~a~~k~~~~~~----------~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~ 328 (759)
+.....++.... ...-..|||+||.+++|+++|+.+|++||.|..|.+ ++.++|||||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 876544332110 011123999999999999999999999999999964 67889999999999999
Q ss_pred HHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 329 AEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 329 A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
|.+|+..|||.+|.|+.|+|..-..+
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeee
Confidence 99999999999999999999876543
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=9.5e-19 Score=197.63 Aligned_cols=163 Identities=26% Similarity=0.457 Sum_probs=140.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC--------CCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~--------gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
++|||+||++++|.++|..+|.+.|.|..+.+. ..+.|||||+|.++++|++|++.|+|+.+.|..|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999998642 125599999999999999999999999999999999998
Q ss_pred CCCCCCC-----CCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCC-----CCceEEEEECCHHHHHHHHHHh
Q 004350 267 IPKDNPS-----EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH-----KRHHKFIEFYDVRAAEAALRAL 336 (759)
Q Consensus 267 ~~k~~~~-----~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~-----s~GfgFVeF~~~e~A~~Al~~L 336 (759)
..+.... ......++|.|+|||+..+-.+++++|..||.|++|++..+ .+|||||+|-++++|..|+++|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 7221100 01112458999999999999999999999999999998543 4899999999999999999999
Q ss_pred CCCeeCCcEEEEEecCCCchh
Q 004350 337 NRSDINGKRIKLEPSRPGGAR 357 (759)
Q Consensus 337 ng~~i~G~~L~V~~a~~k~~r 357 (759)
..+.|.|++|.++|+......
T Consensus 676 ~STHlyGRrLVLEwA~~d~~~ 696 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNTM 696 (725)
T ss_pred cccceechhhheehhccchHH
Confidence 999999999999999876653
No 33
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1e-18 Score=183.61 Aligned_cols=157 Identities=20% Similarity=0.425 Sum_probs=138.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
-++|||+.|.+...|+.||..|.+||.|+.|. .+++++|||||+|+-++.|.-|++.||+..+.||.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP-- 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP-- 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC--
Confidence 47999999999999999999999999999997 57899999999999999999999999999999999999743
Q ss_pred CCCCCC---------CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHH
Q 004350 269 KDNPSE---------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALR 334 (759)
Q Consensus 269 k~~~~~---------~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~ 334 (759)
..-+.. +.....+|||..+.++++++||+.+|+.||+|+.|++ ....+|||||+|.+..+-..|+.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 222211 1123468999999999999999999999999999986 23568999999999999999999
Q ss_pred HhCCCeeCCcEEEEEecC
Q 004350 335 ALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 335 ~Lng~~i~G~~L~V~~a~ 352 (759)
.||-.+++|..|+|..+-
T Consensus 271 sMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hcchhhcccceEeccccc
Confidence 999999999999987664
No 34
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.1e-18 Score=177.17 Aligned_cols=166 Identities=23% Similarity=0.432 Sum_probs=142.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccc-cCC--ceeeEee
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRR--RKLDIHF 265 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~-l~g--r~L~V~~ 265 (759)
++|+|||+.|...-.|+|++.+|..||.|.+|.+ .+.+||||||.|.+..+|..||..|+|.. +.| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 6899999999999999999999999999999984 57899999999999999999999999964 433 4677777
Q ss_pred cCCCCCC-------------------------------------------------------------------------
Q 004350 266 SIPKDNP------------------------------------------------------------------------- 272 (759)
Q Consensus 266 a~~k~~~------------------------------------------------------------------------- 272 (759)
+...+++
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 5332110
Q ss_pred --------------------------------------------------------------------------------
Q 004350 273 -------------------------------------------------------------------------------- 272 (759)
Q Consensus 273 -------------------------------------------------------------------------------- 272 (759)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ---------------------CCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCH
Q 004350 273 ---------------------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDV 326 (759)
Q Consensus 273 ---------------------~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~ 326 (759)
..+....++|||..||.+..+.+|.+.|-+||.|++.++ ++.+|+||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000012258999999999999999999999999999864 788999999999999
Q ss_pred HHHHHHHHHhCCCeeCCcEEEEEecCCCchhh
Q 004350 327 RAAEAALRALNRSDINGKRIKLEPSRPGGARR 358 (759)
Q Consensus 327 e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~r~ 358 (759)
.+|++||.+|||..|+-|+|+|.+.+|+.+.+
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999998654
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.77 E-value=2.6e-17 Score=189.89 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
..++|||+|||+++++++|+++|++||.|..|++ ++++||||||+|.+.++|.+|+..|++..+.|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999874 46789999999999999999999999999999999998854
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.2e-17 Score=170.59 Aligned_cols=194 Identities=21% Similarity=0.303 Sum_probs=138.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~ 271 (759)
..-|||||+||+.++||+-|..||.+.|.|..+++- |+ .|.|.|+....+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i----------~~--------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI----------FD--------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceee----------hh--------------------hhccccccCccc
Confidence 346899999999999999999999999999988742 22 456777665544
Q ss_pred CCCCccC-ccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcE
Q 004350 272 PSEKDVN-QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR 345 (759)
Q Consensus 272 ~~~~~~~-~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~ 345 (759)
.+..... .--+||+.|...++.++||+.|.+||+|.++++ +++++|||||.|.+.++|+.||..|||..|++|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 4433333 346999999999999999999999999999876 6789999999999999999999999999999999
Q ss_pred EEEEecCCCchhhhhhhhhhHHHHHHHHhhhcc-ccCCCCCCC----CCCCcccCCCcccccccccCCCCCCCcccCCC
Q 004350 346 IKLEPSRPGGARRNLMQQLNQELEQDEARGFRH-QVGSPVTNS----PPGTWAQFGSPVERNPLHAFSKSPGLGTLSPI 419 (759)
Q Consensus 346 L~V~~a~~k~~r~~~~~q~~~~~~q~~~~~~~~-~~Gsp~~ns----~p~~f~~~Gsp~~~~~m~~~~rS~~~G~v~~~ 419 (759)
|+-.||.+|......-+..-+++-.+....-.. -.|.-..-. ....|+.||.+.+.++..+ .++.||+.-
T Consensus 134 IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~----qGYaFVrF~ 208 (321)
T KOG0148|consen 134 IRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD----QGYAFVRFE 208 (321)
T ss_pred eeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----cceEEEEec
Confidence 999999876533211110001110000000000 001111000 1367999999999888755 456688653
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.71 E-value=1.4e-16 Score=160.24 Aligned_cols=162 Identities=27% Similarity=0.447 Sum_probs=141.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHH----HhhccCCeEEEEe--CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 191 EHPSRTLFVRNINSNVEDLELRS----LFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~----lFs~fG~I~~v~~--~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
..+..||||.||+..+..++|+. +|++||+|.+|.. +.+.||-|||.|.+.+.|-.|+++|+|..|.|++++|+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34556999999999999999987 9999999999983 67899999999999999999999999999999999999
Q ss_pred ecCCCCCCCC----------------------------------------------CccCccceEEeccCCCCcHHHHHH
Q 004350 265 FSIPKDNPSE----------------------------------------------KDVNQGTLVVFNLDASVSNDDLRQ 298 (759)
Q Consensus 265 ~a~~k~~~~~----------------------------------------------~~~~~~tLfV~NLp~~~TeedLr~ 298 (759)
||..+...-. .......||+.|||..++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 9855421100 012345799999999999999999
Q ss_pred HhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEecC
Q 004350 299 IFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSR 352 (759)
Q Consensus 299 ~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~-G~~L~V~~a~ 352 (759)
+|+.|...++|+......+.+||+|.+...|..|...+++..|. .++++|.+++
T Consensus 166 lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999987778899999999999999999999999887 8888888775
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.71 E-value=2.3e-17 Score=176.75 Aligned_cols=163 Identities=17% Similarity=0.374 Sum_probs=143.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
..++|||++|+++++++.|+++|.+||+|.+|.+ +++++||+||+|.+++...+++. .....|.++.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6799999999999999999999999999999873 67899999999999999999997 45678999999999998
Q ss_pred CCCCCCCCcc--CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCe
Q 004350 268 PKDNPSEKDV--NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSD 340 (759)
Q Consensus 268 ~k~~~~~~~~--~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~ 340 (759)
+.....+... ...+|||++|+.++++++|++.|++||.|..+.+ +.+.++|+||.|++++++.+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8765543322 3668999999999999999999999998877743 45679999999999999999987 57889
Q ss_pred eCCcEEEEEecCCCchh
Q 004350 341 INGKRIKLEPSRPGGAR 357 (759)
Q Consensus 341 i~G~~L~V~~a~~k~~r 357 (759)
|.|+.++|+.|.|+...
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999998654
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.64 E-value=1.4e-15 Score=168.48 Aligned_cols=246 Identities=20% Similarity=0.281 Sum_probs=171.3
Q ss_pred cCCCccChhHHHhccccccccccCCCCcccccccccccCC---cEEEEecCcchhhccceeeeeccCcccCccc------
Q 004350 102 GSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGG---GMELEFEPHESLSIGVSKLNISDGIAGTGIA------ 172 (759)
Q Consensus 102 ~NlLp~d~d~~~~~vade~~v~kl~~~~~dleedlF~s~G---~v~V~~d~~esa~~g~~kv~f~~~~~~~~~~------ 172 (759)
-++++.+ .+.-..++..+..+.-+.+ ++ ++|+..| .|.+..|..+...+|+..+.|.+......+.
T Consensus 170 ~~l~~eE-Rd~Rtvf~~qla~r~~pRd---L~-efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqr 244 (549)
T KOG0147|consen 170 RILSPEE-RDQRTVFCMQLARRNPPRD---LE-EFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQR 244 (549)
T ss_pred ccCCchH-HhHHHHHHHHHhhcCCchh---HH-HHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCc
Confidence 3455433 4444444455555443333 22 2444444 4788899999999999999998875442111
Q ss_pred ccccCCCCCCccCC-----------C-CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEE
Q 004350 173 HYPISNGVGTVAGE-----------H-PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVM 235 (759)
Q Consensus 173 ~~~l~n~v~~~~g~-----------~-~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAF 235 (759)
..+++-.+...+.+ . ..-..+-+.|||+||.+++++++|+.+|++||.|..|.+ +|+++||+|
T Consensus 245 llg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGf 324 (549)
T KOG0147|consen 245 LLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGF 324 (549)
T ss_pred ccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcce
Confidence 00111000000000 0 011233344999999999999999999999999998872 789999999
Q ss_pred EEecCHHHHHHHHHHccccccCCceeeEeecCCCCCCC------------------------------------------
Q 004350 236 ISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPS------------------------------------------ 273 (759)
Q Consensus 236 VeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~~~------------------------------------------ 273 (759)
|+|.+.++|++|+..|+|..|-|+.|+|.....+....
T Consensus 325 i~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~ 404 (549)
T KOG0147|consen 325 ITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPST 404 (549)
T ss_pred EEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999986532110000
Q ss_pred --------------------------CCc-------cCccceEEecc--CCCCc--------HHHHHHHhhccCCeEEEE
Q 004350 274 --------------------------EKD-------VNQGTLVVFNL--DASVS--------NDDLRQIFGAYGEVKEIR 310 (759)
Q Consensus 274 --------------------------~~~-------~~~~tLfV~NL--p~~~T--------eedLr~~Fs~fG~I~~v~ 310 (759)
... ....++.++|+ |...| .||+.+.+.+||.|..|.
T Consensus 405 ~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~ 484 (549)
T KOG0147|consen 405 AISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIF 484 (549)
T ss_pred hhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEE
Confidence 000 11234556665 22222 367889999999999999
Q ss_pred ecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 311 ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 311 i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
+++.+-|+.||.|.+.++|..|+++|||.+++|+.|..+|-.
T Consensus 485 vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 485 VDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred EccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 998888999999999999999999999999999999988753
No 40
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.9e-15 Score=145.67 Aligned_cols=148 Identities=22% Similarity=0.319 Sum_probs=126.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC--cceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK--HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gk--srGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
+.+++|||+|||.++.+.||.++|.+||.|+.|.+..+ .-.||||+|+++.+|+.||..-+|..+.|..|+|+++..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45799999999999999999999999999999986433 3579999999999999999999999999999999997544
Q ss_pred CCCCC----------------------CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHH
Q 004350 270 DNPSE----------------------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVR 327 (759)
Q Consensus 270 ~~~~~----------------------~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e 327 (759)
..... ....+..+.|.+||.+-+.+||+++..+-|.|....+. +.|.+.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~--rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ--RDGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee--cccceeeeeeehh
Confidence 21110 11123579999999999999999999999999888875 3468999999999
Q ss_pred HHHHHHHHhCCCee
Q 004350 328 AAEAALRALNRSDI 341 (759)
Q Consensus 328 ~A~~Al~~Lng~~i 341 (759)
+-+-|+++|....+
T Consensus 162 DMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKF 175 (241)
T ss_pred hHHHHHHhhccccc
Confidence 99999999976655
No 41
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.55 E-value=7.7e-15 Score=161.07 Aligned_cols=128 Identities=21% Similarity=0.345 Sum_probs=108.3
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||+++|+++|+++|+.||.|++|++ +++++|||||+|.++++|++||+.|++..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 35679999999999999999999999999999976 4567899999999999999999999999999999999999
Q ss_pred CCCc----hhhhhhhhhhHHHHHHHHhhhccccCCCCCCCCCCCcccCCCccccccccc--CCCCCCCcccCCC
Q 004350 352 RPGG----ARRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA--FSKSPGLGTLSPI 419 (759)
Q Consensus 352 ~~k~----~r~~~~~q~~~~~~q~~~~~~~~~~Gsp~~ns~p~~f~~~Gsp~~~~~m~~--~~rS~~~G~v~~~ 419 (759)
++.. ..+.++.++...+++++++.+| ..||.+....++.+ .+++++++||...
T Consensus 185 ~p~~~~~~~~~lfV~nLp~~vtee~L~~~F---------------~~fG~V~~v~i~~d~~tg~~kG~aFV~F~ 243 (346)
T TIGR01659 185 RPGGESIKDTNLYVTNLPRTITDDQLDTIF---------------GKYGQIVQKNILRDKLTGTPRGVAFVRFN 243 (346)
T ss_pred cccccccccceeEEeCCCCcccHHHHHHHH---------------HhcCCEEEEEEeecCCCCccceEEEEEEC
Confidence 7643 2345788888888999998774 44566666666655 7788999999764
No 42
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=2.8e-14 Score=144.86 Aligned_cols=150 Identities=27% Similarity=0.432 Sum_probs=129.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCCCC-
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPS- 273 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~~~- 273 (759)
..+||++||+.+.+++|..+|..||.|.++.+. .||+||+|.+..+|..|+..|+++.|.+..+.|+|+.......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 468999999999999999999999999998754 5889999999999999999999999999999999987431100
Q ss_pred ---------------CCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCC
Q 004350 274 ---------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR 338 (759)
Q Consensus 274 ---------------~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng 338 (759)
........|+|.|+...+.+.+|.++|+++|.+..... ..+++||+|.+.++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 01223457899999999999999999999999954444 678999999999999999999999
Q ss_pred CeeCCcEEEEEe
Q 004350 339 SDINGKRIKLEP 350 (759)
Q Consensus 339 ~~i~G~~L~V~~ 350 (759)
..+.++.|++..
T Consensus 156 ~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 156 KKLNGRRISVEK 167 (216)
T ss_pred hhhcCceeeecc
Confidence 999999999933
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.47 E-value=1.9e-13 Score=132.33 Aligned_cols=78 Identities=26% Similarity=0.473 Sum_probs=71.9
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..++|||+||++++|+++|+++|++||.|++|++ +++++|||||+|.+.++|++||+.|++..|+|+.|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 3568999999999999999999999999999976 45679999999999999999999999999999999999997
Q ss_pred CCc
Q 004350 353 PGG 355 (759)
Q Consensus 353 ~k~ 355 (759)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 653
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.45 E-value=6.2e-13 Score=128.80 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
....++|||+|||+++|+++|+++|++||.|.+|.+ +++++|||||+|.+.++|++|++.|++..|.|++|+|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 445789999999999999999999999999999874 567899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004350 266 SIPKDN 271 (759)
Q Consensus 266 a~~k~~ 271 (759)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876543
No 45
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.44 E-value=4.6e-12 Score=133.86 Aligned_cols=165 Identities=15% Similarity=0.241 Sum_probs=133.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EE----eCCCcceEEEEEecCHHHHHHHHHHccccccCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------LY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRR 258 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~--------v~----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g 258 (759)
...++.|||.|||.++|.+|+.++|++||-|.+ |+ ..|..+|=|+|.|.-.+++.-|+..|++..|+|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 445678999999999999999999999998753 22 257789999999999999999999999999999
Q ss_pred ceeeEeecCCCCC-------------C---------------------CCCccCccceEEeccCC----CCc-------H
Q 004350 259 RKLDIHFSIPKDN-------------P---------------------SEKDVNQGTLVVFNLDA----SVS-------N 293 (759)
Q Consensus 259 r~L~V~~a~~k~~-------------~---------------------~~~~~~~~tLfV~NLp~----~~T-------e 293 (759)
+.|+|+.|.-+.. . ..+....++|.++|+=. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 9999987632210 0 00112346899999822 223 4
Q ss_pred HHHHHHhhccCCeEEEEe-cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 294 DDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 294 edLr~~Fs~fG~I~~v~i-~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
++|++-+++||.|..|.+ .....|.+-|.|.+.++|..||+.|+|..++|++|..+...-+.
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 678888999999999976 45678999999999999999999999999999999987765443
No 46
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.43 E-value=9.7e-13 Score=131.56 Aligned_cols=150 Identities=21% Similarity=0.331 Sum_probs=117.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCCCc----ceEEEEEecCHHHHHHHHHHccccccC---CceeeE
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACKH----RGFVMISYYDIRAARTAMRALQNKPLR---RRKLDI 263 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~--~~gks----rGfAFVeF~~~e~A~kAi~~L~g~~l~---gr~L~V 263 (759)
.-|||||.+||.++...||+.+|..|---+.+. .+.+. +-+|||.|.+..+|..|+.+|+|.+|. +..|.|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 469999999999999999999999885544433 33332 469999999999999999999999985 678888
Q ss_pred eecCCCCC--CC---------------------C----------------------------Ccc---------------
Q 004350 264 HFSIPKDN--PS---------------------E----------------------------KDV--------------- 277 (759)
Q Consensus 264 ~~a~~k~~--~~---------------------~----------------------------~~~--------------- 277 (759)
+++..... .. . .+.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 87532110 00 0 000
Q ss_pred ----------------CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecC-CCCceEEEEECCHHHHHHHHHHhCCCe
Q 004350 278 ----------------NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDVRAAEAALRALNRSD 340 (759)
Q Consensus 278 ----------------~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~-~s~GfgFVeF~~~e~A~~Al~~Lng~~ 340 (759)
.-.||||-||..++||++|+++|+.|-.....++.. ..+..+||+|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 003899999999999999999999998777776643 346789999999999999999999887
Q ss_pred eC
Q 004350 341 IN 342 (759)
Q Consensus 341 i~ 342 (759)
|.
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 63
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.34 E-value=1.5e-11 Score=135.20 Aligned_cols=157 Identities=17% Similarity=0.278 Sum_probs=125.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~---~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
....|.+++|||++|++||.++|+-++ |+.+. .+++..|-|||+|.+.+++++|++ .+...+..+-|.|--+..+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 456889999999999999999999987 33333 468899999999999999999999 6778888999999766444
Q ss_pred CCC-------CCCccCccceEEeccCCCCcHHHHHHHhhccCCeEE-EEe----cCCCCceEEEEECCHHHHHHHHHHhC
Q 004350 270 DNP-------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALRALN 337 (759)
Q Consensus 270 ~~~-------~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~-v~i----~~~s~GfgFVeF~~~e~A~~Al~~Ln 337 (759)
+.. .........|-+++||+.+|++||.++|+..-.|.. |.+ -+++.|-|||+|++.+.|++||.. |
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-h 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-H 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-H
Confidence 321 111235568999999999999999999997754433 211 345788999999999999999985 6
Q ss_pred CCeeCCcEEEEEecC
Q 004350 338 RSDINGKRIKLEPSR 352 (759)
Q Consensus 338 g~~i~G~~L~V~~a~ 352 (759)
...|.-+-|+|-.+.
T Consensus 166 re~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSS 180 (510)
T ss_pred HHhhccceEEeehhH
Confidence 778888889987664
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.34 E-value=4.2e-12 Score=105.74 Aligned_cols=66 Identities=35% Similarity=0.609 Sum_probs=61.6
Q ss_pred eEEeccCCCCcHHHHHHHhhccCCeEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 004350 282 LVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (759)
Q Consensus 282 LfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~ 347 (759)
|||+|||.++|+++|+++|++||.|..+.+. +..+++|||+|.+.++|++|++.|+|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999998753 45689999999999999999999999999999986
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.29 E-value=4e-11 Score=128.87 Aligned_cols=161 Identities=24% Similarity=0.309 Sum_probs=135.6
Q ss_pred CcEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCC-
Q 004350 194 SRTLFVRNIN-SNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN- 271 (759)
Q Consensus 194 ~rtLfVgNLP-~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~- 271 (759)
+..|.|.||. ..+|.+.|..+|.-||+|.+|++....+--|+|+|.|...|.-|+..|.|.++.|++|+|.++.-..-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 6899999996 55899999999999999999997666678999999999999999999999999999999998753321
Q ss_pred -----CCCC-------------------------ccCccceEEeccCCCCcHHHHHHHhhccCCeEE-EEecCCCCceEE
Q 004350 272 -----PSEK-------------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE-IRETPHKRHHKF 320 (759)
Q Consensus 272 -----~~~~-------------------------~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~-v~i~~~s~GfgF 320 (759)
..+. -....+|...|+|.+++||+|+..|..-|.... .+..++.+.++.
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 0000 012358999999999999999999998876544 456667778999
Q ss_pred EEECCHHHHHHHHHHhCCCeeCC-cEEEEEecCCC
Q 004350 321 IEFYDVRAAEAALRALNRSDING-KRIKLEPSRPG 354 (759)
Q Consensus 321 VeF~~~e~A~~Al~~Lng~~i~G-~~L~V~~a~~k 354 (759)
+++.++|+|..|+..++.+.+++ +.|+|++++..
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999999999999999999974 69999999753
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.28 E-value=2.4e-11 Score=130.51 Aligned_cols=163 Identities=26% Similarity=0.423 Sum_probs=133.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceE-EEEEecCHHHHHHHHHHccccccCC--ceeeEeec---
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFS--- 266 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGf-AFVeF~~~e~A~kAi~~L~g~~l~g--r~L~V~~a--- 266 (759)
+--+++|.|+-+-++-+-|..+|++||.|.+|.+..+.-|| |+|+|.+.+.|..|..+|+|+.|.. +.|+|.|+
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 34478899999999999999999999999999876677776 9999999999999999999987642 35555553
Q ss_pred -------CCCCC-------CCC--------------------------------------C--cc--CccceEEeccCC-
Q 004350 267 -------IPKDN-------PSE--------------------------------------K--DV--NQGTLVVFNLDA- 289 (759)
Q Consensus 267 -------~~k~~-------~~~--------------------------------------~--~~--~~~tLfV~NLp~- 289 (759)
..|.. +.. . .. ....|-|.||..
T Consensus 229 ~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~ 308 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEE 308 (492)
T ss_pred cceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchh
Confidence 21110 000 0 00 134688889865
Q ss_pred CCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 290 SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 290 ~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
.+|.+.|.-+|+.||+|..|++.-+++..|.|+|.|...|+-|+..|+|..+.||+|+|.+++-..
T Consensus 309 ~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 309 AVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 589999999999999999999876667899999999999999999999999999999999997543
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.28 E-value=1e-11 Score=103.39 Aligned_cols=66 Identities=29% Similarity=0.591 Sum_probs=61.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceee
Q 004350 197 LFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (759)
Q Consensus 197 LfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~ 262 (759)
|||+|||.++|+++|+++|++||.|..+.+ .++.+++|||+|.+.++|++|+..|++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988874 356899999999999999999999999999999874
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.28 E-value=4.9e-11 Score=128.83 Aligned_cols=159 Identities=22% Similarity=0.360 Sum_probs=129.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs-~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
..|.+||.|||+++...+|+++|. +.|+|..|.+ .+++||||.|+|+++|.+++|++.|+...+.|++|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 357799999999999999999997 6899998873 68999999999999999999999999999999999997422
Q ss_pred CCCC------------------------------------------CCCC------------------------------
Q 004350 268 PKDN------------------------------------------PSEK------------------------------ 275 (759)
Q Consensus 268 ~k~~------------------------------------------~~~~------------------------------ 275 (759)
..+. +.++
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 1000 0000
Q ss_pred ---------ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeC
Q 004350 276 ---------DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (759)
Q Consensus 276 ---------~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~ 342 (759)
.....++||.||.+.+..+.|++.|.-.|.|..|.. .+.++||+.++|..+-+|..||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 001137999999999999999999999999988853 3578899999999999999999999876666
Q ss_pred CcEEEEEec
Q 004350 343 GKRIKLEPS 351 (759)
Q Consensus 343 G~~L~V~~a 351 (759)
.++..+.+.
T Consensus 283 ~~~~~~Rl~ 291 (608)
T KOG4212|consen 283 DRRMTVRLD 291 (608)
T ss_pred cccceeecc
Confidence 666655543
No 53
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=4.3e-11 Score=126.72 Aligned_cols=159 Identities=18% Similarity=0.374 Sum_probs=126.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
+.-.+|||..+.++.+|+||+.+|+.||+|..|.+ ...+|||+||+|.+..+...|+..||-..+.|+.|+|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 45679999999999999999999999999999983 4678999999999999999999999999999999999763
Q ss_pred CCCCCC--------------------------------------------------------------------------
Q 004350 267 IPKDNP-------------------------------------------------------------------------- 272 (759)
Q Consensus 267 ~~k~~~-------------------------------------------------------------------------- 272 (759)
....+.
T Consensus 288 vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~ 367 (544)
T KOG0124|consen 288 VTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITG 367 (544)
T ss_pred cCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceecc
Confidence 111000
Q ss_pred ---C-------------------------------C--------------------------------------CccCcc
Q 004350 273 ---S-------------------------------E--------------------------------------KDVNQG 280 (759)
Q Consensus 273 ---~-------------------------------~--------------------------------------~~~~~~ 280 (759)
. + +....+
T Consensus 368 vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~ 447 (544)
T KOG0124|consen 368 VTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQEST 447 (544)
T ss_pred CCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCc
Confidence 0 0 000123
Q ss_pred ceEEecc--CCCCc---HHHHHHHhhccCCeEEEEecCCCCc---------eEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 004350 281 TLVVFNL--DASVS---NDDLRQIFGAYGEVKEIRETPHKRH---------HKFIEFYDVRAAEAALRALNRSDINGKRI 346 (759)
Q Consensus 281 tLfV~NL--p~~~T---eedLr~~Fs~fG~I~~v~i~~~s~G---------fgFVeF~~~e~A~~Al~~Lng~~i~G~~L 346 (759)
.|.++|+ |.+++ +.++++.|++||.|..|-+.+.+.+ --||+|....++.+|+++|+|+.++|+++
T Consensus 448 VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~V 527 (544)
T KOG0124|consen 448 VIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKV 527 (544)
T ss_pred EEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCcee
Confidence 5778887 45554 4689999999999999876443322 26999999999999999999999999998
Q ss_pred EEEe
Q 004350 347 KLEP 350 (759)
Q Consensus 347 ~V~~ 350 (759)
..+.
T Consensus 528 vAE~ 531 (544)
T KOG0124|consen 528 VAEV 531 (544)
T ss_pred ehhh
Confidence 7543
No 54
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.26 E-value=4.3e-11 Score=122.80 Aligned_cols=119 Identities=26% Similarity=0.442 Sum_probs=101.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
.++|||+|||.++++++|+++|.+||.|..+.+ +++++|||||+|.+.++|..|+..+++..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999977762 578999999999999999999999999999999999999542
Q ss_pred ----CCCCC----------------CCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec
Q 004350 269 ----KDNPS----------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET 312 (759)
Q Consensus 269 ----k~~~~----------------~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~ 312 (759)
+.... ........+++.|++..++..++...|..+|.+..+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 21111 011234589999999999999999999999999777653
No 55
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.5e-11 Score=129.22 Aligned_cols=77 Identities=19% Similarity=0.354 Sum_probs=71.2
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEec---CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~---~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
..++|+|.||||..-|.||+.+|++||.|.+|.|. ..+||||||+|++.++|++|-.+|||..|.||+|+|..+..+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 45789999999999999999999999999999863 457999999999999999999999999999999999998764
No 56
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.1e-11 Score=114.60 Aligned_cols=76 Identities=26% Similarity=0.463 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
.+.++||||+||+..++|++|.++|+++|+|++|.+ +....|||||+|.+.++|..|++.+++..+..++|.+.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 467899999999999999999999999999999973 456789999999999999999999999999999999998
Q ss_pred c
Q 004350 266 S 266 (759)
Q Consensus 266 a 266 (759)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 57
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.2e-11 Score=119.95 Aligned_cols=77 Identities=26% Similarity=0.506 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
-.++|||+||+..+++.||...|..||.|..|++.....|||||+|+++.+|+.|+..|+|+.|.|..|.|+.+.-.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 36899999999999999999999999999999988888999999999999999999999999999999999998543
No 58
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=1.8e-11 Score=118.86 Aligned_cols=76 Identities=32% Similarity=0.486 Sum_probs=71.7
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
.++|||+||+..+++.||..+|.+||.|..|-|.-...|||||||+++.+|..|+..|+|+.|.|.+|+|+++.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 5789999999999999999999999999999887788899999999999999999999999999999999998643
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.22 E-value=2.6e-10 Score=123.24 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=64.6
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEe--cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i--~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
++|||+|||+++|.+.|++-|..||.|+.+.+ .++++| .|.|.++++|+.|+..|+|..++|+.|+|.+.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 47999999999999999999999999999988 555554 99999999999999999999999999999873
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=1.4e-10 Score=103.81 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=75.6
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEe--cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i--~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
.+.|||+|||+++|.|+..++|.+||.|+.|++ ++..+|-|||.|++..+|.+|++.|+|..++++.|.|-+-++...
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDA 97 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHH
Confidence 467999999999999999999999999999998 456689999999999999999999999999999999999988776
Q ss_pred hhhhh
Q 004350 357 RRNLM 361 (759)
Q Consensus 357 r~~~~ 361 (759)
.+...
T Consensus 98 ~~~~~ 102 (124)
T KOG0114|consen 98 FKLMD 102 (124)
T ss_pred HHHHH
Confidence 65443
No 61
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.16 E-value=1.1e-10 Score=121.75 Aligned_cols=74 Identities=20% Similarity=0.404 Sum_probs=67.9
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEecC--CCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~--~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
.++|||+||++.+|+++|+++|+.||+|++|++.. ..+|||||+|.+.++|..||. |+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999998743 357999999999999999996 999999999999999863
No 62
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.15 E-value=1.4e-10 Score=120.91 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=68.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC--CCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~--gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
.++|||+|||+.+|+++|+++|+.||+|.+|.+. +..+|||||+|.++++|+.|+. |+|..|.|++|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 5899999999999999999999999999999852 3368999999999999999996 9999999999999998643
No 63
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.4e-10 Score=103.78 Aligned_cols=79 Identities=28% Similarity=0.468 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~--~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
+...+.|||+|||+++|.++..++|.+||.|+.|++ +...+|.|||.|+++.+|++|++.|.|..+.++.|.|-|-.+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 445789999999999999999999999999999995 556899999999999999999999999999999999988755
Q ss_pred C
Q 004350 269 K 269 (759)
Q Consensus 269 k 269 (759)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=6.4e-11 Score=109.59 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=69.5
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..+||||+||++.+|||+|.++|+++|+|+.|-+ +....||+||+|.+.++|..|++-++|+.++.+.|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4679999999999999999999999999999843 55678999999999999999999999999999999998864
Q ss_pred C
Q 004350 353 P 353 (759)
Q Consensus 353 ~ 353 (759)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.8e-10 Score=117.17 Aligned_cols=79 Identities=22% Similarity=0.412 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
..+..+|.|.||+.++++++|++||.+||.|.+|+ .+|.+||||||.|.+.++|.+||..|+|.-+.+--|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678999999999999999999999999999998 3899999999999999999999999999999999999999
Q ss_pred cCCC
Q 004350 266 SIPK 269 (759)
Q Consensus 266 a~~k 269 (759)
+.|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.2e-10 Score=118.42 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=72.7
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
...+|-|.||+.++++++|+++|.+||.|..|.+ ++.++|||||.|.++++|++||+.|||+-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4568999999999999999999999999999864 78899999999999999999999999999999999999999
Q ss_pred CC
Q 004350 353 PG 354 (759)
Q Consensus 353 ~k 354 (759)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.4e-10 Score=122.00 Aligned_cols=82 Identities=21% Similarity=0.381 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~---~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
.....++|+|.|||+...|-||+.+|++||+|.+|.+ ..-+|||+||.|+++++|++|..+|+|..+.||+|.|..+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 3445689999999999999999999999999998873 3458999999999999999999999999999999999998
Q ss_pred CCCCC
Q 004350 267 IPKDN 271 (759)
Q Consensus 267 ~~k~~ 271 (759)
.+...
T Consensus 172 TarV~ 176 (376)
T KOG0125|consen 172 TARVH 176 (376)
T ss_pred chhhc
Confidence 76543
No 68
>PLN03213 repressor of silencing 3; Provisional
Probab=99.13 E-value=1.9e-10 Score=125.74 Aligned_cols=90 Identities=26% Similarity=0.359 Sum_probs=76.3
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecC-CCCceEEEEECCH--HHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDV--RAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~-~s~GfgFVeF~~~--e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
....+|||+||++.+|+++|+.+|..||.|+.|.+.. ..||||||+|.+. .++.+||..|||..+.|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3456899999999999999999999999999997631 1289999999987 789999999999999999999999987
Q ss_pred CchhhhhhhhhhHHHHHH
Q 004350 354 GGARRNLMQQLNQELEQD 371 (759)
Q Consensus 354 k~~r~~~~~q~~~~~~q~ 371 (759)
. ++.++.++..++
T Consensus 88 ~-----YLeRLkrEReea 100 (759)
T PLN03213 88 H-----YLARLKREWEAA 100 (759)
T ss_pred H-----HHHHHHHHHHHh
Confidence 5 566655554443
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.12 E-value=2e-10 Score=96.49 Aligned_cols=66 Identities=32% Similarity=0.616 Sum_probs=58.8
Q ss_pred eEEeccCCCCcHHHHHHHhhccCCeEEEEecC----CCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 004350 282 LVVFNLDASVSNDDLRQIFGAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (759)
Q Consensus 282 LfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~----~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~ 347 (759)
|||+|||+++++++|+++|+.||.|..+++.. ..+++|||+|.+.++|.+|++.+++..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999997643 3479999999999999999999999999999985
No 70
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=3.4e-10 Score=127.56 Aligned_cols=164 Identities=16% Similarity=0.322 Sum_probs=127.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
.......+||++||...++.+++++.+.||.+.... .++-++||||.+|.++.-...|+..|+|+.+.+++|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 345567999999999999999999999999987654 246899999999999999999999999999999999999
Q ss_pred ecCCCCCCCC---C-----------------ccCccceEEecc--CCCCc--------HHHHHHHhhccCCeEEEEecC-
Q 004350 265 FSIPKDNPSE---K-----------------DVNQGTLVVFNL--DASVS--------NDDLRQIFGAYGEVKEIRETP- 313 (759)
Q Consensus 265 ~a~~k~~~~~---~-----------------~~~~~tLfV~NL--p~~~T--------eedLr~~Fs~fG~I~~v~i~~- 313 (759)
.+........ . ...+..|...|+ +.++. -|+++..|.+||.|.+|.+..
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 8765432110 0 011123333333 11111 146788899999999997632
Q ss_pred -------CCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 314 -------HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 314 -------~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
-..|-.||+|.+.+++++|..+|+|..++|++|...|-..
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 1356789999999999999999999999999999988753
No 71
>smart00362 RRM_2 RNA recognition motif.
Probab=99.12 E-value=3.2e-10 Score=93.11 Aligned_cols=69 Identities=30% Similarity=0.606 Sum_probs=63.1
Q ss_pred ceEEeccCCCCcHHHHHHHhhccCCeEEEEecCC---CCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH---KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 281 tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~---s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
+|||+|||..+++++|+++|++||.|..+++... .+++|||+|.+.++|++|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999876433 47999999999999999999999999999999874
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.10 E-value=2.4e-10 Score=96.02 Aligned_cols=66 Identities=23% Similarity=0.536 Sum_probs=58.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeC----CCcceEEEEEecCHHHHHHHHHHccccccCCceee
Q 004350 197 LFVRNINSNVEDLELRSLFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (759)
Q Consensus 197 LfVgNLP~~vteeeLr~lFs~fG~I~~v~~~----gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~ 262 (759)
|||+|||+++++++|+++|+.||.|..+.+. ++.+|+|||+|.++++|++|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999988742 44689999999999999999999988999999875
No 73
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1e-10 Score=118.53 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=69.3
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
|..-++|||++|++.++.|+|++.|++||+|+++.+ ++++||||||+|+|.++|.+|++.. .-.|+||+..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccch
Confidence 344578999999999999999999999999999854 6889999999999999999999854 4689999999988
Q ss_pred cCCCc
Q 004350 351 SRPGG 355 (759)
Q Consensus 351 a~~k~ 355 (759)
|--++
T Consensus 88 A~lg~ 92 (247)
T KOG0149|consen 88 ASLGG 92 (247)
T ss_pred hhhcC
Confidence 86543
No 74
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=8e-11 Score=122.06 Aligned_cols=98 Identities=26% Similarity=0.401 Sum_probs=88.8
Q ss_pred ceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC--chhh
Q 004350 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG--GARR 358 (759)
Q Consensus 281 tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k--~~r~ 358 (759)
+|||+|||..+++.+|+.+|++||+|.+|+|. |.||||..++...|..||+.|||..|+|..|.|+-++.| ...+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stk 80 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV---KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTK 80 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee---cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccc
Confidence 69999999999999999999999999999986 689999999999999999999999999999999998877 5567
Q ss_pred hhhhhhhHHHHHHHHhhhccccC
Q 004350 359 NLMQQLNQELEQDEARGFRHQVG 381 (759)
Q Consensus 359 ~~~~q~~~~~~q~~~~~~~~~~G 381 (759)
..+.++...-+.++++..|..+|
T Consensus 81 l~vgNis~tctn~ElRa~fe~yg 103 (346)
T KOG0109|consen 81 LHVGNISPTCTNQELRAKFEKYG 103 (346)
T ss_pred cccCCCCccccCHHHhhhhcccC
Confidence 78888888888888887766665
No 75
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.08 E-value=2.5e-10 Score=111.68 Aligned_cols=128 Identities=23% Similarity=0.331 Sum_probs=103.0
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
.+.||||+||+..++++.|+++|-+.|.|+.+++ +...+|||||+|.++|+|+-|++.||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4679999999999999999999999999999965 45578999999999999999999999999999999999887
Q ss_pred CCch-----hhhhhhhhhHHHHHHHHhhhccccCCCCCCCCCCCcccCCCccccccccc--CCCCCCCcccCCC
Q 004350 353 PGGA-----RRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA--FSKSPGLGTLSPI 419 (759)
Q Consensus 353 ~k~~-----r~~~~~q~~~~~~q~~~~~~~~~~Gsp~~ns~p~~f~~~Gsp~~~~~m~~--~~rS~~~G~v~~~ 419 (759)
.... .+.+++++..++++.-+...|..+|.-.. +| .+|.+ ++.+++||++...
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~--~P------------~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLIS--PP------------KIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhcccccc--CC------------cccccccCCCCCCCeEEech
Confidence 3222 23467888888888888877776664322 12 23444 6788889998653
No 76
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.06 E-value=1.6e-10 Score=114.67 Aligned_cols=76 Identities=36% Similarity=0.569 Sum_probs=70.6
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
..+|.|-||-+.||.++|+.+|++||.|-+|.| +..++|||||.|.+..+|+.|+++|+|..|+|+.|.|++|+=
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 457999999999999999999999999999976 677899999999999999999999999999999999998864
Q ss_pred C
Q 004350 354 G 354 (759)
Q Consensus 354 k 354 (759)
+
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 4
No 77
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=2.7e-10 Score=115.56 Aligned_cols=76 Identities=22% Similarity=0.409 Sum_probs=66.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
+..-++|||++|+|.+..++|+++|++||+|++.. .++++|||+||.|.|.++|.+|++. .+-.|.||+-.|..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34457999999999999999999999999998876 3789999999999999999999984 45678999888877
Q ss_pred cC
Q 004350 266 SI 267 (759)
Q Consensus 266 a~ 267 (759)
+.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 64
No 78
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=7.7e-10 Score=89.42 Aligned_cols=56 Identities=36% Similarity=0.612 Sum_probs=51.6
Q ss_pred HHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 296 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 296 Lr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
|+++|++||+|+.+.+..+.++++||+|.+.++|.+|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999987666799999999999999999999999999999999986
No 79
>smart00362 RRM_2 RNA recognition motif.
Probab=99.02 E-value=1.1e-09 Score=89.97 Aligned_cols=69 Identities=30% Similarity=0.566 Sum_probs=62.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC---CCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 196 tLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~---gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
+|||+|||..+++++|+++|++||.|..+.+. +..+|+|||+|.+.++|++|+..+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999988743 3357999999999999999999999999999998763
No 80
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=1.1e-09 Score=114.14 Aligned_cols=78 Identities=26% Similarity=0.474 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+-+||||+-|+++++|.+|+..|++||.|+.|. ++++++|||||+|.++.+...|.+..+|.+|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 346789999999999999999999999999999887 589999999999999999999999999999999999998
Q ss_pred ecC
Q 004350 265 FSI 267 (759)
Q Consensus 265 ~a~ 267 (759)
+..
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 764
No 81
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.99 E-value=5.1e-09 Score=111.73 Aligned_cols=169 Identities=22% Similarity=0.323 Sum_probs=133.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccc--cccCCceeeEe
Q 004350 187 HPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIH 264 (759)
Q Consensus 187 ~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g--~~l~gr~L~V~ 264 (759)
.+....++-.|.|++|-..++|.+|-+-.+.||.|..+.. .+.+..|.|+|++++.|++++.--.. ..+.|+.--+.
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 3445667889999999999999999999999999998865 36788999999999999999863322 34567777777
Q ss_pred ecCCCCCCC---CCccCccceE--EeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCC
Q 004350 265 FSIPKDNPS---EKDVNQGTLV--VFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRS 339 (759)
Q Consensus 265 ~a~~k~~~~---~~~~~~~tLf--V~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~ 339 (759)
|+..+.-.. +.....+.|. |-|--+.+|-+-|..++.+.|.|..|-|..+.--.|.|||++.+.|++|..+|||.
T Consensus 103 yStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGA 182 (494)
T KOG1456|consen 103 YSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGA 182 (494)
T ss_pred cchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccc
Confidence 774432211 1112223333 44656689999999999999999999887665557999999999999999999999
Q ss_pred eeC-C-cEEEEEecCCCch
Q 004350 340 DIN-G-KRIKLEPSRPGGA 356 (759)
Q Consensus 340 ~i~-G-~~L~V~~a~~k~~ 356 (759)
+|. | ++|+|+||+|..-
T Consensus 183 DIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 183 DIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred cccccceeEEEEecCccee
Confidence 884 3 7999999998643
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=1.4e-09 Score=113.40 Aligned_cols=88 Identities=31% Similarity=0.455 Sum_probs=77.4
Q ss_pred CCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEECCHHHHHHHHHHhCCCee
Q 004350 267 IPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDI 341 (759)
Q Consensus 267 ~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~-----i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i 341 (759)
.|..++......-+||||.-|+.+++|.+|+..|++||.|+.|+ ++++++|||||+|+++.+..+|.+..+|..|
T Consensus 89 dP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 89 DPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 34444444555678999999999999999999999999999995 4789999999999999999999999999999
Q ss_pred CCcEEEEEecCCC
Q 004350 342 NGKRIKLEPSRPG 354 (759)
Q Consensus 342 ~G~~L~V~~a~~k 354 (759)
+|+.|.|.+-+-.
T Consensus 169 dgrri~VDvERgR 181 (335)
T KOG0113|consen 169 DGRRILVDVERGR 181 (335)
T ss_pred cCcEEEEEecccc
Confidence 9999999887644
No 83
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.99 E-value=5.8e-10 Score=110.86 Aligned_cols=78 Identities=27% Similarity=0.485 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
+.....+|.|-||.+-++.++|+.+|++||.|.+|++ +..++|||||.|.+..+|+.|+.+|+|..|.|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3445689999999999999999999999999999984 67899999999999999999999999999999999999
Q ss_pred ecC
Q 004350 265 FSI 267 (759)
Q Consensus 265 ~a~ 267 (759)
+|.
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 874
No 84
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=6.3e-10 Score=108.83 Aligned_cols=78 Identities=29% Similarity=0.474 Sum_probs=71.0
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecC--CCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~--~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
..++|||+|||.++-+.+|.++|-+||.|.+|.+.. ..-.|+||+|++..+|+.||..-+|..++|++|+|++++.+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 457899999999999999999999999999997643 335799999999999999999999999999999999998664
No 85
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.98 E-value=3.2e-09 Score=87.59 Aligned_cols=70 Identities=37% Similarity=0.635 Sum_probs=64.0
Q ss_pred ceEEeccCCCCcHHHHHHHhhccCCeEEEEecCC----CCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 281 tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~----s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
+|+|+|||..+++++|+++|+.||.|..+.+... .++++||+|.+.++|..|++.+++..+.|++|+|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999876433 379999999999999999999999999999999864
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.97 E-value=2.5e-09 Score=110.12 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=66.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~--~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
..+|||+||++.+|+++|+++|+.||+|..|.+ .++.++||||+|.++++|+.|+. |+|..|.+++|.|...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 479999999999999999999999999999984 45677999999999999999996 9999999999999764
No 87
>PLN03213 repressor of silencing 3; Provisional
Probab=98.97 E-value=1.5e-09 Score=118.95 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC-CCcceEEEEEecCH--HHHHHHHHHccccccCCceeeEeecCC
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA-CKHRGFVMISYYDI--RAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~-gksrGfAFVeF~~~--e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
....+||||||++++++++|+.+|..||.|.+|.+. ...||||||+|.+. .++++||..|+|..++|+.|+|..|.+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 345799999999999999999999999999998842 22399999999987 789999999999999999999998865
Q ss_pred C
Q 004350 269 K 269 (759)
Q Consensus 269 k 269 (759)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 88
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=8.6e-10 Score=123.30 Aligned_cols=166 Identities=27% Similarity=0.375 Sum_probs=132.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
.....++|+|-|||..|++++|+.+|+.||+|+.|+.+.-.+|.+||+|+|.++|++|+++|++..+.|+.|........
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 35678999999999999999999999999999999988888999999999999999999999999999998873221100
Q ss_pred C------------------CCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHH
Q 004350 270 D------------------NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEA 331 (759)
Q Consensus 270 ~------------------~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~ 331 (759)
. ......-....++.- |++..+...++.+|..+|.+.. +.++.....-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhh
Confidence 0 000011112345544 9999988888999999999988 8888777788999999999977
Q ss_pred HHHHhCCCeeCCcEEEEEecCCCchhh
Q 004350 332 ALRALNRSDINGKRIKLEPSRPGGARR 358 (759)
Q Consensus 332 Al~~Lng~~i~G~~L~V~~a~~k~~r~ 358 (759)
++..+ |..+.+....+.++.+++...
T Consensus 229 ~~~~~-G~~~s~~~~v~t~S~~~g~~n 254 (549)
T KOG4660|consen 229 SEPRG-GFLISNSSGVITFSGPGGVWN 254 (549)
T ss_pred cccCC-ceecCCCCceEEecCCCcccC
Confidence 77754 778888888888888866543
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.97 E-value=2.3e-09 Score=110.37 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=66.6
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEec--CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~--~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..+|||+||++.+|+++|+++|+.||+|.+|++. +..++||||+|+++++|..|+. |+|..|.++.|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999873 4556899999999999999995 99999999999998764
No 90
>smart00360 RRM RNA recognition motif.
Probab=98.94 E-value=2.7e-09 Score=87.13 Aligned_cols=66 Identities=32% Similarity=0.623 Sum_probs=59.8
Q ss_pred EeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 284 VFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 284 V~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
|+|||..+++++|+++|++||.|..+.+. +..+++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999998763 3447899999999999999999999999999999873
No 91
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.93 E-value=2.4e-09 Score=86.56 Aligned_cols=56 Identities=23% Similarity=0.594 Sum_probs=50.8
Q ss_pred HHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 211 LRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 211 Lr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|++..+.|++|.|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999875444699999999999999999999999999999999986
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.91 E-value=5.7e-09 Score=86.06 Aligned_cols=70 Identities=34% Similarity=0.638 Sum_probs=63.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCC----CcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 196 tLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~g----ksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
+|+|+|||..+++++|+++|+.||.|..+.+.. ..+|+|||+|.+.++|+.|+..+++..+.++.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999887532 3489999999999999999999999999999998864
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=7.9e-10 Score=110.63 Aligned_cols=80 Identities=28% Similarity=0.496 Sum_probs=73.9
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..++|||++|-.++|+.-|...|-+||.|+.|++ +.+.||||||+|...|+|.+||..||+.+|.||+|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4579999999999999999999999999999975 56789999999999999999999999999999999999999
Q ss_pred CCchh
Q 004350 353 PGGAR 357 (759)
Q Consensus 353 ~k~~r 357 (759)
|...+
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 86543
No 94
>smart00360 RRM RNA recognition motif.
Probab=98.90 E-value=4.3e-09 Score=85.90 Aligned_cols=66 Identities=32% Similarity=0.570 Sum_probs=59.6
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 199 VRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 199 VgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
|+|||..+++++|+++|++||.|..+.+ +++++|+|||+|.+.++|.+|+..+++..+.|++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999988874 34568999999999999999999999999999998773
No 95
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.88 E-value=6.1e-09 Score=106.85 Aligned_cols=75 Identities=35% Similarity=0.624 Sum_probs=70.0
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
..+|||+||+.++|+++|+++|..||.|..|++ ++..+|||||+|.+.++|..|++.++|..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999988764 467899999999999999999999999999999999999764
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.88 E-value=1.3e-08 Score=112.53 Aligned_cols=229 Identities=14% Similarity=0.181 Sum_probs=149.2
Q ss_pred ccccccCCCCcccccc-cccccCCcEEEEecCcchhhccceeeeeccCcccCc-------------ccccccCCCCCCcc
Q 004350 119 DFDLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTG-------------IAHYPISNGVGTVA 184 (759)
Q Consensus 119 e~~v~kl~~~~~dlee-dlF~s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~~-------------~~~~~l~n~v~~~~ 184 (759)
..-++.|+++|.+-|- ++|+.++--.+++...++...+.++|.|...+.... +.++..........
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~ 91 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWV 91 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcccccc
Confidence 3467778888877444 777777765566666667777777777766654432 22221111100000
Q ss_pred C--CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-E----EeCCCcceEEEEEecCHHHHHHHHHHccccccC
Q 004350 185 G--EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT-L----YTACKHRGFVMISYYDIRAARTAMRALQNKPLR 257 (759)
Q Consensus 185 g--~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~-v----~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~ 257 (759)
- ..+.....+.+|.+++||+.||++||.++|+..--|.. | ...+++.|-|||+|.+.+.|++|+. -+...|.
T Consensus 92 ~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iG 170 (510)
T KOG4211|consen 92 MRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIG 170 (510)
T ss_pred ccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhc
Confidence 0 01112235679999999999999999999996644433 1 1246788999999999999999998 4556677
Q ss_pred CceeeEeecCC-----------------------CCCCC-----------------------------------------
Q 004350 258 RRKLDIHFSIP-----------------------KDNPS----------------------------------------- 273 (759)
Q Consensus 258 gr~L~V~~a~~-----------------------k~~~~----------------------------------------- 273 (759)
.+-|.|-.+.- .....
T Consensus 171 hRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs 250 (510)
T KOG4211|consen 171 HRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGS 250 (510)
T ss_pred cceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccc
Confidence 77666643200 00000
Q ss_pred ---CCc---------------------cC-ccceEEeccCCCCcHHHHHHHhhccCCe-EEEE--ecCCCCceEEEEECC
Q 004350 274 ---EKD---------------------VN-QGTLVVFNLDASVSNDDLRQIFGAYGEV-KEIR--ETPHKRHHKFIEFYD 325 (759)
Q Consensus 274 ---~~~---------------------~~-~~tLfV~NLp~~~TeedLr~~Fs~fG~I-~~v~--i~~~s~GfgFVeF~~ 325 (759)
.++ .. ...++.++||+..++.++..+|+..-.+ +.|. -+++..|-++|+|.+
T Consensus 251 ~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t 330 (510)
T KOG4211|consen 251 YGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFAT 330 (510)
T ss_pred cccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeeccc
Confidence 000 00 0256778999999999999999976443 2223 367788999999999
Q ss_pred HHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 326 VRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 326 ~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
.++|..|+.+ ++..+..+-|++-
T Consensus 331 ~edav~Amsk-d~anm~hrYVElF 353 (510)
T KOG4211|consen 331 GEDAVGAMGK-DGANMGHRYVELF 353 (510)
T ss_pred chhhHhhhcc-CCcccCcceeeec
Confidence 9999999874 5566666666543
No 97
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.85 E-value=9.8e-08 Score=102.09 Aligned_cols=162 Identities=20% Similarity=0.309 Sum_probs=133.2
Q ss_pred CCCcEEEEcCC--CCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccC--CceeeEeecC
Q 004350 192 HPSRTLFVRNI--NSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSI 267 (759)
Q Consensus 192 ~~~rtLfVgNL--P~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~--gr~L~V~~a~ 267 (759)
.++..|.+.=| -+.+|.+-|..+..+.|+|.+|.+..+..-.|+|||++.+.|++|..+|+|..|. -..|+|+|+.
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 44556655544 4678999999999999999999987787889999999999999999999998763 4588899886
Q ss_pred CCCCC------C-----------------------C---------------------------------------Cc---
Q 004350 268 PKDNP------S-----------------------E---------------------------------------KD--- 276 (759)
Q Consensus 268 ~k~~~------~-----------------------~---------------------------------------~~--- 276 (759)
|.+-. . . ++
T Consensus 198 P~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g 277 (494)
T KOG1456|consen 198 PTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRG 277 (494)
T ss_pred cceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCC
Confidence 64200 0 0 00
Q ss_pred -------cCccceEEeccCCC-CcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 004350 277 -------VNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 348 (759)
Q Consensus 277 -------~~~~tLfV~NLp~~-~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V 348 (759)
.....+-|.+|+.. ++-+.|..+|..||.|..|+..+.+.|-|.||+.|..+.++|+..||+..+-|.+|.|
T Consensus 278 ~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 278 YASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 01136889999875 5678899999999999999988888899999999999999999999999999999999
Q ss_pred EecCC
Q 004350 349 EPSRP 353 (759)
Q Consensus 349 ~~a~~ 353 (759)
..++.
T Consensus 358 ~~SkQ 362 (494)
T KOG1456|consen 358 CVSKQ 362 (494)
T ss_pred eeccc
Confidence 99864
No 98
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.7e-09 Score=108.33 Aligned_cols=80 Identities=25% Similarity=0.501 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
...|+|||++|..+|+|.-|...|-+||+|.+|.+ +.++||||||+|...++|..||..|++..|.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34699999999999999999999999999999973 5789999999999999999999999999999999999999
Q ss_pred CCCCC
Q 004350 267 IPKDN 271 (759)
Q Consensus 267 ~~k~~ 271 (759)
.|.+.
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 87653
No 99
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=5.7e-08 Score=108.14 Aligned_cols=143 Identities=17% Similarity=0.289 Sum_probs=109.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-------CCCcce---EEEEEecCHHHHHHHHHHccccccCCc
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-------ACKHRG---FVMISYYDIRAARTAMRALQNKPLRRR 259 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-------~gksrG---fAFVeF~~~e~A~kAi~~L~g~~l~gr 259 (759)
..+-+++|||++||++++|++|...|..||.+..=.- ....+| |+|+.|+++..++.-+.+..- ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 3456789999999999999999999999999764321 123566 999999999999988876543 444
Q ss_pred eeeEeecCCCCCC-------------------CCCccCccceEEeccCCCCcHHHHHHHhh-ccCCeEEEEecC-----C
Q 004350 260 KLDIHFSIPKDNP-------------------SEKDVNQGTLVVFNLDASVSNDDLRQIFG-AYGEVKEIRETP-----H 314 (759)
Q Consensus 260 ~L~V~~a~~k~~~-------------------~~~~~~~~tLfV~NLp~~~TeedLr~~Fs-~fG~I~~v~i~~-----~ 314 (759)
.++++.+.+.... ...-...+||||++||.-++-++|..+|+ -||.|..|-|+. -
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 4444443332111 11122467999999999999999999999 799999986643 3
Q ss_pred CCceEEEEECCHHHHHHHHHH
Q 004350 315 KRHHKFIEFYDVRAAEAALRA 335 (759)
Q Consensus 315 s~GfgFVeF~~~e~A~~Al~~ 335 (759)
.+|-|-|+|.+..+-.+||.+
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 589999999999999999985
No 100
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=5.8e-09 Score=97.51 Aligned_cols=78 Identities=23% Similarity=0.422 Sum_probs=71.4
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
+.+....|||.++...+|++++.+.|..||+|+.+.+ ++-.+||++|+|++.++|++|+.+|||..|-|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3455678999999999999999999999999999964 56678999999999999999999999999999999999
Q ss_pred ecC
Q 004350 350 PSR 352 (759)
Q Consensus 350 ~a~ 352 (759)
|+-
T Consensus 148 w~F 150 (170)
T KOG0130|consen 148 WCF 150 (170)
T ss_pred EEE
Confidence 984
No 101
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.77 E-value=1.7e-08 Score=108.90 Aligned_cols=155 Identities=17% Similarity=0.288 Sum_probs=109.1
Q ss_pred ccCCCccChhHHHhccccccccccCCCCcccccccccccCCcEEEEecCcchhhccceeeeeccCcccCcccccccCC--
Q 004350 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISN-- 178 (759)
Q Consensus 101 i~NlLp~d~d~~~~~vade~~v~kl~~~~~dleedlF~s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~~~~~~~l~n-- 178 (759)
|+.+.++..++.+.... .+.++ +-.+.++.|......+++.++.|.+......+.......
T Consensus 11 iGgisw~ttee~Lr~yf---------~~~Ge--------v~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~d 73 (311)
T KOG4205|consen 11 IGGLSWETTEESLREYF---------SQFGE--------VTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLD 73 (311)
T ss_pred ecCcCccccHHHHHHHh---------cccCc--------eeeEEEeccCCCCCcccccceecCCCcchheeecccccccC
Confidence 88888887666665542 22222 112567788888999999999998544333222111111
Q ss_pred C----C-CCccCC-CC--CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHH
Q 004350 179 G----V-GTVAGE-HP--YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAAR 245 (759)
Q Consensus 179 ~----v-~~~~g~-~~--~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~ 245 (759)
+ + .++..+ .. .......+|||+.||.++++++|+++|++||.|.++. .+.+.+||+||.|.+.++++
T Consensus 74 gr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVd 153 (311)
T KOG4205|consen 74 GRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVD 153 (311)
T ss_pred CccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccc
Confidence 0 0 011111 11 1112356999999999999999999999999887775 25678999999999999999
Q ss_pred HHHHHccccccCCceeeEeecCCCCCCC
Q 004350 246 TAMRALQNKPLRRRKLDIHFSIPKDNPS 273 (759)
Q Consensus 246 kAi~~L~g~~l~gr~L~V~~a~~k~~~~ 273 (759)
+++. ...+.|.++.+.|+.|.|++...
T Consensus 154 kv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 154 KVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eecc-cceeeecCceeeEeeccchhhcc
Confidence 9998 78889999999999999886543
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.76 E-value=1.7e-08 Score=113.22 Aligned_cols=79 Identities=28% Similarity=0.410 Sum_probs=73.3
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
..+||+|+|+++++++|..+|+..|.|.++++ +++.+||||++|.+.++|..|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999974 6788999999999999999999999999999999999999766
Q ss_pred chhh
Q 004350 355 GARR 358 (759)
Q Consensus 355 ~~r~ 358 (759)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5543
No 103
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.76 E-value=2.9e-08 Score=106.31 Aligned_cols=160 Identities=13% Similarity=0.223 Sum_probs=115.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhc---c--CC--eEEEE-eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQ---Y--GD--IRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~---f--G~--I~~v~-~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
..-.|..++||+++++.++.++|.+ . |. |.-|. ..++..|-|||.|..+++|+.|+.+ +...+.-|.|.+-
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 3457889999999999999999962 2 22 33333 3678899999999999999999984 3344444444432
Q ss_pred ecCCC--------------CC----------C---CCCccCccceEEeccCCCCcHHHHHHHhhccCC-eEE--EE--e-
Q 004350 265 FSIPK--------------DN----------P---SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGE-VKE--IR--E- 311 (759)
Q Consensus 265 ~a~~k--------------~~----------~---~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~-I~~--v~--i- 311 (759)
.+... -. + ........+|.+++||+..|.|+|..+|..|.. |+. |. +
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 21100 00 0 011122568999999999999999999998853 222 22 2
Q ss_pred -cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 312 -TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 312 -~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
.++..|-+||+|.+.|+|.+|..+.+.+...++.|+|-.+.-
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 467789999999999999999999888888899999877643
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.76 E-value=1.3e-08 Score=114.24 Aligned_cols=77 Identities=26% Similarity=0.441 Sum_probs=72.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
+.|||||||+++++++|..+|+..|.|..++ .+|+.+||||++|.+.++|.+|++.|++..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999987 47899999999999999999999999999999999999998654
Q ss_pred CC
Q 004350 270 DN 271 (759)
Q Consensus 270 ~~ 271 (759)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=98.73 E-value=3.4e-08 Score=83.83 Aligned_cols=56 Identities=30% Similarity=0.503 Sum_probs=49.9
Q ss_pred HHHHHHHhh----ccCCeEEEE---e---c--CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 004350 293 NDDLRQIFG----AYGEVKEIR---E---T--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 348 (759)
Q Consensus 293 eedLr~~Fs----~fG~I~~v~---i---~--~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V 348 (759)
+++|+++|+ +||.|.+|. + + +.++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999884 2 2 567999999999999999999999999999999986
No 106
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=2.2e-09 Score=104.97 Aligned_cols=76 Identities=20% Similarity=0.409 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
.++.-|||+|||++.||.+|.-+|++||+|+.|. .+|+++||||+.|++.++..-|+..|+|..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4568999999999999999999999999999886 38999999999999999999999999999999999999765
Q ss_pred C
Q 004350 267 I 267 (759)
Q Consensus 267 ~ 267 (759)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 107
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=2.7e-08 Score=93.08 Aligned_cols=81 Identities=17% Similarity=0.438 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
.....-.|||.++...+|+++|.+.|..||+|+.+.+ ++-.+|||+|+|.+.++|++|+.++|+..|.+++|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3445679999999999999999999999999999873 67789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004350 265 FSIPKD 270 (759)
Q Consensus 265 ~a~~k~ 270 (759)
|+.-+.
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 986443
No 108
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.64 E-value=5.5e-08 Score=98.67 Aligned_cols=77 Identities=32% Similarity=0.616 Sum_probs=71.5
Q ss_pred cceEEeccCCCCcHHHHHH----HhhccCCeEEEEe--cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 280 GTLVVFNLDASVSNDDLRQ----IFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~----~Fs~fG~I~~v~i--~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
.||||.||+..+..++|+. +|+.||+|.+|.. +++.+|-|||.|++.+.|-.|+++|+|..+.|+.++|.||+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 3999999999999999988 9999999999975 567799999999999999999999999999999999999987
Q ss_pred Cch
Q 004350 354 GGA 356 (759)
Q Consensus 354 k~~ 356 (759)
+..
T Consensus 90 ~sd 92 (221)
T KOG4206|consen 90 DSD 92 (221)
T ss_pred ccc
Confidence 654
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=5.2e-08 Score=110.16 Aligned_cols=166 Identities=20% Similarity=0.343 Sum_probs=134.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcc-----------CC-eEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQY-----------GD-IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR 258 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~f-----------G~-I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g 258 (759)
....+.++|+++|..+++++.-.+|..- |+ +..+.+ +..+.||||+|.+.++|..|+. +++..+.|
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g 249 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAMA-LDGIIFEG 249 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhhc-ccchhhCC
Confidence 4567899999999999999999988753 33 566655 4889999999999999999998 88888888
Q ss_pred ceeeEeecCCCCC-------------------CCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCC
Q 004350 259 RKLDIHFSIPKDN-------------------PSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPH 314 (759)
Q Consensus 259 r~L~V~~a~~k~~-------------------~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~ 314 (759)
+++.+.-...... .........++||++||..+++++++++.+.||.++..+. ++.
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~ 329 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGN 329 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccc
Confidence 8877743211100 0011123458999999999999999999999999877643 467
Q ss_pred CCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCchhh
Q 004350 315 KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARR 358 (759)
Q Consensus 315 s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~r~ 358 (759)
++||+|.+|.+......|+..|||..+.+++|.|..|-.+....
T Consensus 330 skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 330 SKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNA 373 (500)
T ss_pred ccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhc
Confidence 89999999999999999999999999999999999998765543
No 110
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=2e-08 Score=117.18 Aligned_cols=160 Identities=20% Similarity=0.341 Sum_probs=138.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC----CCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~----gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
+.+.+++||++||+..+++.+|+..|..+|.|..|.+. +.-.-||||.|.+...+-+|...+.+..|..-.+.+.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 45678999999999999999999999999999998842 23455999999999999999999999988877777777
Q ss_pred cCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCC--
Q 004350 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDING-- 343 (759)
Q Consensus 266 a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G-- 343 (759)
..+ +....+.++|++|..-+....|.+.|..||.|..|.+. +..-|++|.|.+...|++|+..|.|..|+|
T Consensus 448 G~~------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 448 GQP------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred ccc------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 654 23345679999999999999999999999999999884 345699999999999999999999999987
Q ss_pred cEEEEEecCCCch
Q 004350 344 KRIKLEPSRPGGA 356 (759)
Q Consensus 344 ~~L~V~~a~~k~~ 356 (759)
++|.|.++.+-+.
T Consensus 521 ~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 521 RRLRVDLASPPGA 533 (975)
T ss_pred cccccccccCCCC
Confidence 7899999986544
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.62 E-value=7.1e-08 Score=111.16 Aligned_cols=75 Identities=31% Similarity=0.544 Sum_probs=70.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
+||||||.|+..+++.||+.+|+.||+|.+|.+. ..+|||||.+....+|.+|+.+|.+..+.++.|+|.|+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 5799999999999999999999999999999864 78999999999999999999999999999999999999644
No 112
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=5.2e-09 Score=102.36 Aligned_cols=73 Identities=23% Similarity=0.398 Sum_probs=68.2
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
..-|||+|||+.+||.||.-+|++||+|+.|.+ |++++||||+.|+|-.+..-|+..|||..|.|++|+|...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 457999999999999999999999999999954 7899999999999999999999999999999999999654
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=98.54 E-value=2.1e-07 Score=78.88 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=50.0
Q ss_pred HHHHHHHhh----ccCCeEEEE---e---C--CCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 208 DLELRSLFE----QYGDIRTLY---T---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 208 eeeLr~lFs----~fG~I~~v~---~---~--gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
+++|+++|+ +||.|.+|. + + +.++|||||+|.+.++|.+|++.|+|+.+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999998873 2 2 678999999999999999999999999999999876
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=2.2e-07 Score=99.00 Aligned_cols=78 Identities=36% Similarity=0.524 Sum_probs=69.1
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHh-CCCeeCCcEEEEEecCC
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL-NRSDINGKRIKLEPSRP 353 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~L-ng~~i~G~~L~V~~a~~ 353 (759)
++..-.+|||++|...+++.+|+++|.+||+|+++++... +++|||+|.+.++|+.|..++ +...|+|++|+|.|+++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 3445579999999999999999999999999999998654 468999999999999998766 55688999999999998
No 115
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.49 E-value=1.2e-07 Score=97.19 Aligned_cols=159 Identities=19% Similarity=0.227 Sum_probs=117.3
Q ss_pred EEEEcCCCCCCCHHH-H--HHHhhccCCeEEEE----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 196 TLFVRNINSNVEDLE-L--RSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 196 tLfVgNLP~~vteee-L--r~lFs~fG~I~~v~----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
..++.++-..+..+- | ...|+.|-.+.... ..++-++++|+.|.....-.++-..-.+++++-.++++.-...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 445555555555444 2 55666555443322 3567789999999998888888877777777777766654433
Q ss_pred CCCC--CCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEECCHHHHHHHHHHhCCCee
Q 004350 269 KDNP--SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDI 341 (759)
Q Consensus 269 k~~~--~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~-----i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i 341 (759)
.+++ .+.+..+.+||++.|..+++++-|-..|.+|-.....+ -+++++|||||.|.+..++..|++.|+|+.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 3333 23455677999999999999999999999986554332 3788999999999999999999999999999
Q ss_pred CCcEEEEEecCCC
Q 004350 342 NGKRIKLEPSRPG 354 (759)
Q Consensus 342 ~G~~L~V~~a~~k 354 (759)
+.+.|++..+.-+
T Consensus 258 gsrpiklRkS~wk 270 (290)
T KOG0226|consen 258 GSRPIKLRKSEWK 270 (290)
T ss_pred ccchhHhhhhhHH
Confidence 9999998665443
No 116
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.48 E-value=2.8e-07 Score=106.37 Aligned_cols=80 Identities=28% Similarity=0.382 Sum_probs=74.1
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCchh
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 357 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~r 357 (759)
..+||||+.|+..++++||+.+|+.||+|.+|.+. ..+++|||.+....+|.+|+.+|+...+.++.|+|.|+..++-+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 45799999999999999999999999999999885 46789999999999999999999999999999999999887765
Q ss_pred h
Q 004350 358 R 358 (759)
Q Consensus 358 ~ 358 (759)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 5
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=4e-08 Score=98.72 Aligned_cols=132 Identities=21% Similarity=0.296 Sum_probs=109.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
..++||||.|+-..|+|+-|.++|-+-|.|.+|.+ .++.+ ||||.|.++-++.-|+.-++|..+.++++.+++
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~-- 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL-- 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc--
Confidence 45799999999999999999999999999999985 33445 999999999999999999999999998887764
Q ss_pred CCCCCCCCccCccceEEec----cCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCC
Q 004350 268 PKDNPSEKDVNQGTLVVFN----LDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRS 339 (759)
Q Consensus 268 ~k~~~~~~~~~~~tLfV~N----Lp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~ 339 (759)
+.+| |+..++++.+...|+.-|.+..+++ +++.+.++|+.+....+.-.|+....+.
T Consensus 84 ---------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 84 ---------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred ---------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 3344 6777899999999999999988875 4567889999988777777777655544
Q ss_pred ee
Q 004350 340 DI 341 (759)
Q Consensus 340 ~i 341 (759)
.+
T Consensus 149 ~~ 150 (267)
T KOG4454|consen 149 EL 150 (267)
T ss_pred Cc
Confidence 43
No 118
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=1.6e-07 Score=96.73 Aligned_cols=82 Identities=21% Similarity=0.394 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.|+|||-.||.+..+.||..+|-+||.|...+ .++.+|+|+||.|.++.+|+.||.+|||..|.=++|+|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 345679999999999999999999999999998876 367899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 004350 265 FSIPKDN 271 (759)
Q Consensus 265 ~a~~k~~ 271 (759)
.-.||+.
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 8877653
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=3.6e-07 Score=97.45 Aligned_cols=83 Identities=27% Similarity=0.474 Sum_probs=72.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHcccc-ccCCceeeEe
Q 004350 186 EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK-PLRRRKLDIH 264 (759)
Q Consensus 186 ~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~-~l~gr~L~V~ 264 (759)
..+......++|||++|-..++|.+|++.|.+||+|+.+.+. ..+++|||+|.+.++|+.|..++-.+ .+.|++|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-cccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 445566778999999999999999999999999999999865 56789999999999999998776554 5799999999
Q ss_pred ecCCC
Q 004350 265 FSIPK 269 (759)
Q Consensus 265 ~a~~k 269 (759)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99873
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.42 E-value=2.5e-07 Score=99.30 Aligned_cols=165 Identities=20% Similarity=0.272 Sum_probs=128.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
...+++|++++...+.+.++..++..+|.+..+. -...++|+++|.|...+.+..|+.......+.+..+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4678999999999999999999999999776654 24578999999999999999999854434555544443322
Q ss_pred CCCCC----CC--CCccCccceE-EeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHH
Q 004350 267 IPKDN----PS--EKDVNQGTLV-VFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALR 334 (759)
Q Consensus 267 ~~k~~----~~--~~~~~~~tLf-V~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~ 334 (759)
..... .. .......++| |.||++.+++++|+..|..+|.|..+++ ++..+||++|+|.....+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 21111 00 0111223555 9999999999999999999999999976 45678999999999999999998
Q ss_pred HhCCCeeCCcEEEEEecCCCchh
Q 004350 335 ALNRSDINGKRIKLEPSRPGGAR 357 (759)
Q Consensus 335 ~Lng~~i~G~~L~V~~a~~k~~r 357 (759)
. +...+.++.+.|.+..+....
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred c-ccCcccCcccccccCCCCccc
Confidence 7 888999999999999876543
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.35 E-value=5.4e-08 Score=113.36 Aligned_cols=141 Identities=13% Similarity=0.216 Sum_probs=120.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
+...++||+||+..+.+.+|...|..+|.+..+. ..++.||+|||+|..+++|.+|+.....+.++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 4456899999999999999999999999877665 35788999999999999999999844333332
Q ss_pred CCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeC
Q 004350 267 IPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (759)
Q Consensus 267 ~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~ 342 (759)
...++|+|+|+..|.++|+.+|.++|.+++.++ .++.+|.++|.|.+..+|.+++..++...+.
T Consensus 736 ------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 736 ------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred ------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhh
Confidence 346999999999999999999999999999864 4677899999999999999999988877777
Q ss_pred CcEEEEEecCC
Q 004350 343 GKRIKLEPSRP 353 (759)
Q Consensus 343 G~~L~V~~a~~ 353 (759)
-+.+.|..+.|
T Consensus 804 E~~~~v~vsnp 814 (881)
T KOG0128|consen 804 ENNGEVQVSNP 814 (881)
T ss_pred hcCccccccCC
Confidence 77788777666
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=8.5e-07 Score=94.49 Aligned_cols=79 Identities=20% Similarity=0.384 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+...|||..|.+-+|+++|.-+|+.||.|..|. .++.+..||||+|.+.+++++|+-+|++..|.++.|-|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 456789999999999999999999999999999886 377889999999999999999999999999999999999
Q ss_pred ecCC
Q 004350 265 FSIP 268 (759)
Q Consensus 265 ~a~~ 268 (759)
|+..
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 8753
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=9.9e-07 Score=94.01 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=71.4
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
+...|||.-|++-+|+++|.-+|+.||.|++|.+ ++.+-.|+||+|++.++.++|.-+|+...|+.++|.|.+++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4568999999999999999999999999999965 56677899999999999999999999999999999999987
Q ss_pred CCc
Q 004350 353 PGG 355 (759)
Q Consensus 353 ~k~ 355 (759)
+-.
T Consensus 318 SVs 320 (479)
T KOG0415|consen 318 SVS 320 (479)
T ss_pred hhh
Confidence 643
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.23 E-value=3.5e-06 Score=84.57 Aligned_cols=80 Identities=18% Similarity=0.358 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQY-GDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~f-G~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
.......++|..+|..+.+.+|..+|.++ |.|+++++ +|.++|||||+|++++.|+-|-..||+..|.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 44556789999999999999999999999 67777763 7899999999999999999999999999999999999
Q ss_pred eecCCC
Q 004350 264 HFSIPK 269 (759)
Q Consensus 264 ~~a~~k 269 (759)
++-.|.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 987654
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.14 E-value=6.4e-06 Score=82.74 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=70.3
Q ss_pred CccceEEeccCCCCcHHHHHHHhhcc-CCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAY-GEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~f-G~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
..+-+||..+|..+.+.++...|.+| |.|..+++ ||.++|||||+|++.+.|.-|-+.||++-+.|+.|+|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45679999999999999999999998 67777765 7889999999999999999999999999999999999998
Q ss_pred CCC
Q 004350 352 RPG 354 (759)
Q Consensus 352 ~~k 354 (759)
.|.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 776
No 126
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.11 E-value=8.9e-06 Score=87.70 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=114.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-----cCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQ-----YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~-----fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
.+...+..++|||..++.+|..+|.- -|.+......++..|.|.|.|.+.+.-+-|++ -+...+.++.|.|-.+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 34567888999999999999999983 23333333567788999999999999999998 4666678888888765
Q ss_pred CCCCC---------CC---CCccCccceEEeccCCCCcHHHHHHHhhc---c--C--CeEEEEe-cCCCCceEEEEECCH
Q 004350 267 IPKDN---------PS---EKDVNQGTLVVFNLDASVSNDDLRQIFGA---Y--G--EVKEIRE-TPHKRHHKFIEFYDV 326 (759)
Q Consensus 267 ~~k~~---------~~---~~~~~~~tLfV~NLp~~~TeedLr~~Fs~---f--G--~I~~v~i-~~~s~GfgFVeF~~~ 326 (759)
...+- .. -...++-.|..++||++.|+.|+.++|.+ . | .|..|+. +++..|-+||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 44321 00 01123446778899999999999999962 2 2 2444544 677889999999999
Q ss_pred HHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 327 RAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 327 e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
++|+.||.+ |...|+-|.|+|-.
T Consensus 217 e~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHH
Confidence 999999985 54555555565443
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.10 E-value=4.6e-06 Score=93.27 Aligned_cols=73 Identities=25% Similarity=0.483 Sum_probs=67.0
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
++|+|.+|...+--.+|+.+|++||+|+-+++ ++..++||||++.+.++|.+||..|+.++|.|+.|.|+.++
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 58999999999999999999999999988875 34458899999999999999999999999999999999876
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.10 E-value=9.1e-06 Score=90.97 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
.-.++|||.+|...+...+|+.+|++||+|+-.++ +.-.++|+||.+.+.++|.++|..|+.+.|+|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999976552 3346899999999999999999999999999999999886
Q ss_pred C
Q 004350 267 I 267 (759)
Q Consensus 267 ~ 267 (759)
.
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 129
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.07 E-value=1.1e-05 Score=81.64 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=67.9
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEE--EecCCC----CceEEEEECCHHHHHHHHHHhCCCeeC---CcEEEE
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI--RETPHK----RHHKFIEFYDVRAAEAALRALNRSDIN---GKRIKL 348 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v--~i~~~s----~GfgFVeF~~~e~A~~Al~~Lng~~i~---G~~L~V 348 (759)
.-+||||.+||.++..-+|..+|..|-..+.+ +.+.+. +-+|||.|.+.++|++|+.+|||..++ +.+|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 35799999999999999999999998655555 334332 469999999999999999999999997 789999
Q ss_pred EecCCCchhh
Q 004350 349 EPSRPGGARR 358 (759)
Q Consensus 349 ~~a~~k~~r~ 358 (759)
++++....++
T Consensus 113 ElAKSNtK~k 122 (284)
T KOG1457|consen 113 ELAKSNTKRK 122 (284)
T ss_pred eehhcCcccc
Confidence 9998765544
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.00 E-value=1.4e-05 Score=91.42 Aligned_cols=167 Identities=15% Similarity=0.054 Sum_probs=121.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhc-cC---CeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQ-YG---DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 188 ~~~~~~~rtLfVgNLP~~vteeeLr~lFs~-fG---~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
+....+++.+-+++.+++....+++++|.. +- .|..-.+.+...|-++|+|....++.+|++ -+...+..|.+.+
T Consensus 305 pqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~ 383 (944)
T KOG4307|consen 305 PQVVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQT 383 (944)
T ss_pred CcccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceee
Confidence 334456788889999999999999999973 22 222223444558999999999999999998 4666677777766
Q ss_pred eecCCC------CC------C------------C--C---------CccCccceEEeccCCCCcHHHHHHHhhccCCeEE
Q 004350 264 HFSIPK------DN------P------------S--E---------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 308 (759)
Q Consensus 264 ~~a~~k------~~------~------------~--~---------~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~ 308 (759)
-.+-.. .. . . . ......+|||+.||..+++.++.+.|...-.|++
T Consensus 384 ~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 384 GPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred cCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhh
Confidence 432110 00 0 0 0 0012358999999999999999999998777766
Q ss_pred -EEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 309 -IRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 309 -v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
|.++ ++.++.|||+|..++++.+|+..-+.+.++.+.|+|.-...+.
T Consensus 464 ~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 464 FIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred eeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 6653 4557899999999999999998767777888889997654433
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.96 E-value=1.1e-06 Score=95.37 Aligned_cols=148 Identities=17% Similarity=0.333 Sum_probs=122.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeCCCcceEEEEEecCHHHHHHHHHHcccc-ccCCceeeEeecCCCCC
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK-PLRRRKLDIHFSIPKDN 271 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~f--G~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~-~l~gr~L~V~~a~~k~~ 271 (759)
..+|++||.+.++..+|+.+|... +--..+. -..||+||.+.+...|.+|++.++++ .+.|+++.+.++.+++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999999999999999754 1111111 24689999999999999999999997 58999999999877654
Q ss_pred CCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCC--CceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 272 PSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHK--RHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 272 ~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s--~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
. .+++-|+|+|.....+-|..+...||.|..|..+..- .-..-|+|...+.++.||..|+|..+....+++.
T Consensus 79 r------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 R------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred H------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 3 3558999999999999999999999999988643221 2234578899999999999999999999999998
Q ss_pred ec
Q 004350 350 PS 351 (759)
Q Consensus 350 ~a 351 (759)
|-
T Consensus 153 Yi 154 (584)
T KOG2193|consen 153 YI 154 (584)
T ss_pred cC
Confidence 75
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.92 E-value=3e-05 Score=81.10 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
....+|+|.|||+.|++++|+++|..||.+..+.+ .+++.|.|-|.|...++|.+|++.+++..+.|+++.+....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34578999999999999999999999998888764 67889999999999999999999999999999998888654
Q ss_pred C
Q 004350 268 P 268 (759)
Q Consensus 268 ~ 268 (759)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 3
No 133
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.92 E-value=1.5e-05 Score=91.64 Aligned_cols=78 Identities=27% Similarity=0.382 Sum_probs=70.4
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec--------CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~--------~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~ 347 (759)
+..+++|||.||++.++++.|-..|..||.|..|++. .+.+.+|||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4456789999999999999999999999999999862 23467999999999999999999999999999999
Q ss_pred EEecCC
Q 004350 348 LEPSRP 353 (759)
Q Consensus 348 V~~a~~ 353 (759)
+.|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999965
No 134
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.90 E-value=1.7e-05 Score=89.02 Aligned_cols=75 Identities=27% Similarity=0.461 Sum_probs=64.6
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
.+|||+|||++++.++|+++|..||.|+...|. ++..+||||+|.+.++++.||.+ +-..|++++|.|+..++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 469999999999999999999999999987652 22338999999999999999996 467899999999987765
Q ss_pred c
Q 004350 355 G 355 (759)
Q Consensus 355 ~ 355 (759)
-
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.89 E-value=3.6e-05 Score=80.47 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=69.0
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
...+|+|.||+..++++||+++|..||.++.+-+ .+.+.|.|-|.|...++|.+|++.++|..++|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3468999999999999999999999998888754 467789999999999999999999999999999999887755
Q ss_pred C
Q 004350 354 G 354 (759)
Q Consensus 354 k 354 (759)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 4
No 136
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.89 E-value=8.9e-06 Score=83.35 Aligned_cols=70 Identities=26% Similarity=0.478 Sum_probs=65.6
Q ss_pred ceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 281 tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
.+||++|++.+.+.+|..+|..||.|..|.+ +.||+||+|.+..+|..|+..||+++|.|.++.|++++.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 5899999999999999999999999999987 368999999999999999999999999998899998875
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.81 E-value=2.7e-05 Score=87.40 Aligned_cols=72 Identities=24% Similarity=0.387 Sum_probs=61.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
...+|||+|||.++++++|+++|.+||.|+...+ .++..+||||+|.+.++++.||.+ +-..+.+++|.|+-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 3456999999999999999999999999987653 234458999999999999999995 46678899999874
No 138
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.79 E-value=4e-05 Score=88.20 Aligned_cols=83 Identities=18% Similarity=0.364 Sum_probs=72.7
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--------CCCcceEEEEEecCHHHHHHHHHHcccccc
Q 004350 185 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPL 256 (759)
Q Consensus 185 g~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~--------~gksrGfAFVeF~~~e~A~kAi~~L~g~~l 256 (759)
|....+....++|||+||++.++++.|...|..||.|..+++ ..+.+-|+||.|.+..+|++|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 334445667899999999999999999999999999998874 234577999999999999999999999999
Q ss_pred CCceeeEeecC
Q 004350 257 RRRKLDIHFSI 267 (759)
Q Consensus 257 ~gr~L~V~~a~ 267 (759)
.+..+++.|+.
T Consensus 245 ~~~e~K~gWgk 255 (877)
T KOG0151|consen 245 MEYEMKLGWGK 255 (877)
T ss_pred eeeeeeecccc
Confidence 99999999973
No 139
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.65 E-value=5.6e-05 Score=78.98 Aligned_cols=79 Identities=24% Similarity=0.387 Sum_probs=69.0
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
+.+....+||+|+++.+|.+++..+|+.||.|..+.+ .++.+||+||+|.+.+.+..|++ |+|..|.|+.|+|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3445678999999999999999999999999976543 45679999999999999999999 99999999999998
Q ss_pred ecCCC
Q 004350 350 PSRPG 354 (759)
Q Consensus 350 ~a~~k 354 (759)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87543
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.56 E-value=9.1e-05 Score=77.41 Aligned_cols=77 Identities=16% Similarity=0.288 Sum_probs=68.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.+.+||+|+.+.+|.+++...|+-||.|..+. ..+..+|||||+|.+.+.+.+|+. |++..|.++.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 456678999999999999999999999999997554 345689999999999999999999 99999999999997
Q ss_pred ecC
Q 004350 265 FSI 267 (759)
Q Consensus 265 ~a~ 267 (759)
+-.
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 753
No 141
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.55 E-value=8.2e-05 Score=75.34 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=65.7
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..+||||.|+...++++-|.++|-.-|.|..|.|. ++.+ |+||.|.++-...-|++.|||..+.+..|++++-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 35799999999999999999999999999999773 2334 99999999999999999999999999999887643
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.54 E-value=0.00043 Score=60.60 Aligned_cols=70 Identities=24% Similarity=0.321 Sum_probs=48.8
Q ss_pred cceEEeccCCCCcHH----HHHHHhhccC-CeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 280 GTLVVFNLDASVSND----DLRQIFGAYG-EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 280 ~tLfV~NLp~~~Tee----dLr~~Fs~fG-~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
..|+|.|||.+.+.. .|++++.-+| .|..| . .+-|+|.|.+.+.|.+|.+.|+|..+-|.+|.|++....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 469999999988754 5778888885 56655 2 367999999999999999999999999999999998543
No 143
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.52 E-value=4.3e-05 Score=82.84 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=118.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC--------CCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~--------gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
..|.|.||.+.+|.++++.||.-.|+|..+.+. ......|||.|.|...+..|-. |.++.|-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 489999999999999999999999999888732 2356799999999999999987 8888888887777542
Q ss_pred CCCCCCC-------------------------CC---------------------------ccCccceEEeccCCCCcHH
Q 004350 267 IPKDNPS-------------------------EK---------------------------DVNQGTLVVFNLDASVSND 294 (759)
Q Consensus 267 ~~k~~~~-------------------------~~---------------------------~~~~~tLfV~NLp~~~Tee 294 (759)
.....+. +. ..-..+++|.+|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 1110000 00 0011489999999999999
Q ss_pred HHHHHhhccCCeEEEEec-CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 295 DLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 295 dLr~~Fs~fG~I~~v~i~-~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
++-+.|..+|+|...++. +...-++-|+|........|++ ++|.++.-+...+..-+|
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 999999999999988753 3345678899999999999998 577777644444333333
No 144
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.47 E-value=0.00027 Score=75.96 Aligned_cols=74 Identities=14% Similarity=0.334 Sum_probs=65.7
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEE--------Ee----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEI--------RE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v--------~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L 346 (759)
...|||.|||.++|.+++.++|++||.|..- ++ .++-+|=|.|.|...++..-|++.|++..|.|++|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 4569999999999999999999999988553 21 45668899999999999999999999999999999
Q ss_pred EEEecC
Q 004350 347 KLEPSR 352 (759)
Q Consensus 347 ~V~~a~ 352 (759)
+|+.|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999875
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.40 E-value=0.00058 Score=59.80 Aligned_cols=69 Identities=17% Similarity=0.363 Sum_probs=48.7
Q ss_pred cEEEEcCCCCCCCHHHHH----HHhhccC-CeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 195 RTLFVRNINSNVEDLELR----SLFEQYG-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr----~lFs~fG-~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
..|+|.|||.+.+...|+ .++.-|| +|..| +.+.|+|.|.+.+.|++|.+.|.|..+.|.+|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 579999999999987655 6666776 56665 358899999999999999999999999999999999743
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.39 E-value=0.00077 Score=61.13 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=62.2
Q ss_pred cceEEeccCCCCcHHHHHHHhhcc--CCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAY--GEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN----GKRIKL 348 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~f--G~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~----G~~L~V 348 (759)
+||-|+|+|...|.++|.+++... |....+.+ +....|||||.|.+++.|.+-.+.++|+.+. .|..+|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999999754 54444432 3456899999999999999999999999875 578889
Q ss_pred EecCCCc
Q 004350 349 EPSRPGG 355 (759)
Q Consensus 349 ~~a~~k~ 355 (759)
.+|+-.+
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9987544
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.26 E-value=0.00033 Score=72.57 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=66.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCe-----EEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDI-----RTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I-----~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
...+-+||.+.|.-+++++-|-..|.+|-.- .+-.-+++++||+||.|.++.++..|+++|+|+.++.++|.+..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 3456799999999999999999999998653 22235789999999999999999999999999999999998875
Q ss_pred c
Q 004350 266 S 266 (759)
Q Consensus 266 a 266 (759)
+
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 4
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.25 E-value=0.00082 Score=61.91 Aligned_cols=84 Identities=23% Similarity=0.382 Sum_probs=50.2
Q ss_pred ceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCC-----eeCCcEEEEEecCCCc
Q 004350 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRS-----DINGKRIKLEPSRPGG 355 (759)
Q Consensus 281 tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~-----~i~G~~L~V~~a~~k~ 355 (759)
.|+|.+++..++.++|++.|+.||.|..|.+.. ....|+|.|.+.++|++|+.++.-. .|.+..++++.-.-..
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGee 81 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGEE 81 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCHH
Confidence 588999999999999999999999999998853 3457999999999999999988433 5667776665544333
Q ss_pred hhhhhhhhhhH
Q 004350 356 ARRNLMQQLNQ 366 (759)
Q Consensus 356 ~r~~~~~q~~~ 366 (759)
-+.+.+....
T Consensus 82 -E~~Yw~ki~e 91 (105)
T PF08777_consen 82 -EEEYWKKIIE 91 (105)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 3334444433
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.80 E-value=0.0035 Score=57.77 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=40.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHcccc
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 254 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~ 254 (759)
+.|.|.+++..++-++|++.|++||.|..|... +....|||.|.+++.|++|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~-~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS-RGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec-CCCCEEEEEECCcchHHHHHHHHHhc
Confidence 468899999999999999999999999999864 45668999999999999999987654
No 150
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.74 E-value=0.0039 Score=66.77 Aligned_cols=76 Identities=18% Similarity=0.402 Sum_probs=61.9
Q ss_pred CccceEEeccCCCCcHHH----H--HHHhhccCCeEEEEecCCC------Cc-e-EEEEECCHHHHHHHHHHhCCCeeCC
Q 004350 278 NQGTLVVFNLDASVSNDD----L--RQIFGAYGEVKEIRETPHK------RH-H-KFIEFYDVRAAEAALRALNRSDING 343 (759)
Q Consensus 278 ~~~tLfV~NLp~~~Teed----L--r~~Fs~fG~I~~v~i~~~s------~G-f-gFVeF~~~e~A~~Al~~Lng~~i~G 343 (759)
...-+||-+|++.+-+|+ | .++|.+||.|+.|.+..+. .+ + .+|+|.+.++|.+||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999999887766 3 4899999999999764321 22 2 3999999999999999999999999
Q ss_pred cEEEEEecCC
Q 004350 344 KRIKLEPSRP 353 (759)
Q Consensus 344 ~~L~V~~a~~ 353 (759)
|.|+..|...
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999988754
No 151
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.71 E-value=0.0003 Score=83.01 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=117.8
Q ss_pred CCcEEEEcCCCCCCCHH-HHHHHhhccCCeEEEEeCC----Ccce-EEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 193 PSRTLFVRNINSNVEDL-ELRSLFEQYGDIRTLYTAC----KHRG-FVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 193 ~~rtLfVgNLP~~vtee-eLr~lFs~fG~I~~v~~~g----ksrG-fAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
..+...+.++.+...+. ..+..|..+|.|+.|..+. .+.. +.++++....+++.|.. ..+.-+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 34567788887777776 5678999999999997432 1222 78899999999999988 7788888888888777
Q ss_pred CCCCCCCCCcc------CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHH
Q 004350 267 IPKDNPSEKDV------NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRA 335 (759)
Q Consensus 267 ~~k~~~~~~~~------~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~ 335 (759)
.++........ .-.++||+||+..+.+++|+..|.++|.+..+++ .++-+|+|+|+|...+.|.+|+..
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 66543222111 2358999999999999999999999999888764 356689999999999999999996
Q ss_pred hCCCeeCCcEE
Q 004350 336 LNRSDINGKRI 346 (759)
Q Consensus 336 Lng~~i~G~~L 346 (759)
..++.++...+
T Consensus 729 ~d~~~~gK~~v 739 (881)
T KOG0128|consen 729 RDSCFFGKISV 739 (881)
T ss_pred hhhhhhhhhhh
Confidence 66666653333
No 152
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.68 E-value=0.0033 Score=65.44 Aligned_cols=89 Identities=26% Similarity=0.369 Sum_probs=74.6
Q ss_pred HHHHHHHHHccccccCCceeeEeecCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEE----EecCCCCc
Q 004350 242 RAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI----RETPHKRH 317 (759)
Q Consensus 242 e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v----~i~~~s~G 317 (759)
.-|..|-+.|.+....++.|.|.|+. ...|||.||...++.|.|.+.|+.||.|... +..++..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~-----------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAM-----------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeec-----------cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 35778888899999999999999984 2569999999999999999999999988553 33456678
Q ss_pred eEEEEECCHHHHHHHHHHhCCCee
Q 004350 318 HKFIEFYDVRAAEAALRALNRSDI 341 (759)
Q Consensus 318 fgFVeF~~~e~A~~Al~~Lng~~i 341 (759)
-++|+|...-.|.+|+......-+
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred cchhhhhcchhHHHHHHHhccCcc
Confidence 899999999999999997753333
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.48 E-value=0.0039 Score=67.31 Aligned_cols=76 Identities=20% Similarity=0.392 Sum_probs=66.9
Q ss_pred CcEEE-EcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 194 SRTLF-VRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 194 ~rtLf-VgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
..++| |++|+.++++++|+..|..+|.|..+++ ++..+|||||.|.+...+..++.. +...+.++++.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34555 9999999999999999999999999984 567899999999999999999997 8889999999999876
Q ss_pred CCC
Q 004350 268 PKD 270 (759)
Q Consensus 268 ~k~ 270 (759)
+..
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 543
No 154
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.35 E-value=0.0055 Score=67.71 Aligned_cols=75 Identities=29% Similarity=0.407 Sum_probs=58.7
Q ss_pred CCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCC------------------CCceEEEEECCHHHHHHHHHH
Q 004350 274 EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH------------------KRHHKFIEFYDVRAAEAALRA 335 (759)
Q Consensus 274 ~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~------------------s~GfgFVeF~~~e~A~~Al~~ 335 (759)
+.....++|.+.|||.+-.-+.|.+||+.+|.|+.|+|-.- .+-+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457789999999999988999999999999999987211 145799999999999999998
Q ss_pred hCCCeeCCcEEEE
Q 004350 336 LNRSDINGKRIKL 348 (759)
Q Consensus 336 Lng~~i~G~~L~V 348 (759)
|+-..-.-.-|+|
T Consensus 306 ~~~e~~wr~glkv 318 (484)
T KOG1855|consen 306 LNPEQNWRMGLKV 318 (484)
T ss_pred hchhhhhhhcchh
Confidence 8654433333333
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.32 E-value=0.0061 Score=67.12 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=78.4
Q ss_pred cceEEeccCCCCcHHHHHHHhhcc--CCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEecCCCch
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRS-DINGKRIKLEPSRPGGA 356 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~f--G~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~-~i~G~~L~V~~a~~k~~ 356 (759)
.+||++||.+.++..+|..+|... +.-..+- -+.||+||.+.+..-|.+|++.++|+ ++.|+++++..+-++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 369999999999999999999754 1111111 24689999999999999999999998 78999999999988765
Q ss_pred hh--hhhhhhhHHHHHHHHhhhccccCCC
Q 004350 357 RR--NLMQQLNQELEQDEARGFRHQVGSP 383 (759)
Q Consensus 357 r~--~~~~q~~~~~~q~~~~~~~~~~Gsp 383 (759)
+. ..+++..+++.++-+.++..++|.+
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~v 107 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTV 107 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCH
Confidence 43 3555666777777777777777655
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.29 E-value=0.0067 Score=65.08 Aligned_cols=75 Identities=24% Similarity=0.371 Sum_probs=62.0
Q ss_pred CCcEEEEcCCCCCCCHHHH----H--HHhhccCCeEEEEeCCCc------ce--EEEEEecCHHHHHHHHHHccccccCC
Q 004350 193 PSRTLFVRNINSNVEDLEL----R--SLFEQYGDIRTLYTACKH------RG--FVMISYYDIRAARTAMRALQNKPLRR 258 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeL----r--~lFs~fG~I~~v~~~gks------rG--fAFVeF~~~e~A~kAi~~L~g~~l~g 258 (759)
...-+||-+||+.+-.++. + ++|.+||.|..|.+..+. .+ =.||.|.+.++|.+||.+.+|..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3567899999999988873 2 799999999998753221 22 24999999999999999999999999
Q ss_pred ceeeEeecC
Q 004350 259 RKLDIHFSI 267 (759)
Q Consensus 259 r~L~V~~a~ 267 (759)
+-|+..|..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999998864
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.28 E-value=0.01 Score=47.90 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=42.8
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHH
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAAL 333 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al 333 (759)
+.|-|.+.+.+..+. +...|..||+|..+.++ ......+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 357888888777655 55588899999999986 44678999999999999996
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.22 E-value=0.011 Score=47.74 Aligned_cols=52 Identities=15% Similarity=0.386 Sum_probs=43.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHH
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAM 248 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi 248 (759)
+.|-|.+.+.+..+. ++..|..||+|..+..+ ...-+.||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 567888888766644 55588899999999876 56779999999999999985
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.21 E-value=0.0045 Score=67.27 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=68.7
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEE-------------ecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCc
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-------------ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGK 344 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~-------------i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~ 344 (759)
...+|||-+|+..+++++|.++|.++|.|+.=+ .+...++-|.|.|.|...|++|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 446899999999999999999999999886532 3556789999999999999999999999999999
Q ss_pred EEEEEecCCCc
Q 004350 345 RIKLEPSRPGG 355 (759)
Q Consensus 345 ~L~V~~a~~k~ 355 (759)
+|+|.++..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998887654
No 160
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.04 E-value=0.018 Score=66.85 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=61.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCC----eEEEE-eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGD----IRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~----I~~v~-~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
.+.|-+.|+|++++-+||.++|..|-. |..-+ ..+.-.|-|.|.|++.++|++|+..|+++.|..+.+++.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 459999999999999999999999854 33222 357778999999999999999999999999999998875
No 161
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.01 E-value=0.015 Score=66.34 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=59.2
Q ss_pred cCccceEEeccCCCCc------HHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeC-CcE
Q 004350 277 VNQGTLVVFNLDASVS------NDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN-GKR 345 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~T------eedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~-G~~ 345 (759)
.-...|+|-|+|---. ..-|.++|+++|+|....+ .+..+||.|++|.+..+|+.|++.|||+.|+ .|+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3456788999875322 2347789999999988865 3567999999999999999999999999997 678
Q ss_pred EEEEe
Q 004350 346 IKLEP 350 (759)
Q Consensus 346 L~V~~ 350 (759)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 77753
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.87 E-value=0.026 Score=51.60 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=52.0
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEE------------ecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcE-
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR------------ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR- 345 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~------------i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~- 345 (759)
..-|.|.+.|...+ ..+.+.|++||+|.+.. -.....+.--|+|+++.+|++||+ -||..|.|..
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 45689999998855 55778899999998885 123446789999999999999998 5999999864
Q ss_pred EEEEecC
Q 004350 346 IKLEPSR 352 (759)
Q Consensus 346 L~V~~a~ 352 (759)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4466663
No 163
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.71 E-value=0.011 Score=64.35 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=67.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-------------eCCCcceEEEEEecCHHHHHHHHHHccccccC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-------------TACKHRGFVMISYYDIRAARTAMRALQNKPLR 257 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-------------~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~ 257 (759)
....-+|||-+||..+++++|.++|.++|.|..=+ .+.+.||-|.|.|.+...|+.|+.-++++.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567999999999999999999999999886432 36778999999999999999999999999999
Q ss_pred CceeeEeecC
Q 004350 258 RRKLDIHFSI 267 (759)
Q Consensus 258 gr~L~V~~a~ 267 (759)
+.+|.|-.+.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9888887663
No 164
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.67 E-value=0.026 Score=67.46 Aligned_cols=79 Identities=22% Similarity=0.366 Sum_probs=68.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCC--ceeeEeecC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSI 267 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g--r~L~V~~a~ 267 (759)
.....+.++|++|+..+....|...|..||.|..|... ...-||||.|.+...|+.|++.|.+..|.+ +.|.|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 34567899999999999999999999999999998753 556799999999999999999999999975 578888875
Q ss_pred CC
Q 004350 268 PK 269 (759)
Q Consensus 268 ~k 269 (759)
+.
T Consensus 530 ~~ 531 (975)
T KOG0112|consen 530 PP 531 (975)
T ss_pred CC
Confidence 43
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.56 E-value=0.048 Score=52.92 Aligned_cols=82 Identities=32% Similarity=0.460 Sum_probs=53.4
Q ss_pred CccceEEeccC-----CCCcH----HHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 004350 278 NQGTLVVFNLD-----ASVSN----DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 348 (759)
Q Consensus 278 ~~~tLfV~NLp-----~~~Te----edLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V 348 (759)
...|+.|.=+. ...-+ ++|.+.|..||+|.=||.... --.|+|.+-+.|.+|+. |+|.++.|+.|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~---~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD---TMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT---CEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC---eEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 45677777555 11222 368889999999998988653 46999999999999998 8999999999999
Q ss_pred EecCCCchhhhhhhhhhHHH
Q 004350 349 EPSRPGGARRNLMQQLNQEL 368 (759)
Q Consensus 349 ~~a~~k~~r~~~~~q~~~~~ 368 (759)
++..|. +++.+.+++
T Consensus 102 ~LKtpd-----W~~~l~~Ei 116 (146)
T PF08952_consen 102 RLKTPD-----WLKGLEEEI 116 (146)
T ss_dssp EE------------------
T ss_pred EeCCcc-----HHHHHHHHH
Confidence 988764 444444443
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.54 E-value=0.011 Score=65.45 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=55.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC------------------cceEEEEEecCHHHHHHHHHHc
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK------------------HRGFVMISYYDIRAARTAMRAL 251 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gk------------------srGfAFVeF~~~e~A~kAi~~L 251 (759)
.+.++++|.+-|||.+-.-+-|.++|..+|.|..|++-.+ .+-+|+|+|...+.|++|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4468999999999999999999999999999999884111 2568999999999999999977
Q ss_pred ccc
Q 004350 252 QNK 254 (759)
Q Consensus 252 ~g~ 254 (759)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 543
No 167
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.43 E-value=1.2 Score=48.64 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=59.2
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCC--eEEE-----EecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGE--VKEI-----RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~--I~~v-----~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
-++||+||-+-+|++||.+.....|- |.++ +..+.++||++|...+..+.++-++.|-.++|.|..-.|-..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 47999999999999999998877662 3333 346789999999999999999999999999999976665444
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.41 E-value=0.0087 Score=62.35 Aligned_cols=68 Identities=28% Similarity=0.477 Sum_probs=58.8
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCC-----------------CceEEEEECCHHHHHHHHHHhCCCe
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHK-----------------RHHKFIEFYDVRAAEAALRALNRSD 340 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s-----------------~GfgFVeF~~~e~A~~Al~~Lng~~ 340 (759)
..+.||+.|||+.+....|+++|+.||+|-.|.+.+.. -.-|.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45789999999999999999999999999998764311 1138999999999999999999999
Q ss_pred eCCcE
Q 004350 341 INGKR 345 (759)
Q Consensus 341 i~G~~ 345 (759)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99965
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.29 E-value=0.012 Score=61.34 Aligned_cols=69 Identities=20% Similarity=0.420 Sum_probs=59.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCC-------------Ccce----EEEEEecCHHHHHHHHHHcccc
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-------------KHRG----FVMISYYDIRAARTAMRALQNK 254 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~g-------------ksrG----fAFVeF~~~e~A~kAi~~L~g~ 254 (759)
+..-.||+.+||+.+.-.-||++|++||.|-+|++.. ..++ -|.|+|.+...|++....|++.
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 3567999999999999999999999999999998421 1112 2789999999999999999999
Q ss_pred ccCCce
Q 004350 255 PLRRRK 260 (759)
Q Consensus 255 ~l~gr~ 260 (759)
.|.|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999876
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.99 E-value=0.061 Score=49.19 Aligned_cols=72 Identities=11% Similarity=0.168 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE------------eCCCcceEEEEEecCHHHHHHHHHHccccccCCc-
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 259 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~------------~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr- 259 (759)
..+-|.|=+.|+. ....+.+.|++||+|.+.. ..........|.|.++.+|++|+. .+|..|.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567888889887 5677888999999998875 112345689999999999999999 799999875
Q ss_pred eeeEeec
Q 004350 260 KLDIHFS 266 (759)
Q Consensus 260 ~L~V~~a 266 (759)
.+-|.|.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 5557776
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.73 E-value=0.041 Score=62.85 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=55.4
Q ss_pred CCcEEEEcCCCCCCCH------HHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccC-Ccee
Q 004350 193 PSRTLFVRNINSNVED------LELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKL 261 (759)
Q Consensus 193 ~~rtLfVgNLP~~vte------eeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~-gr~L 261 (759)
-+..|+|-|+|---.+ .-|..+|+++|+|..++. .+..+||.|++|.+..+|+.|++.|+|+.|. ...+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3568888888843222 235689999999998874 3679999999999999999999999998874 4444
Q ss_pred eE
Q 004350 262 DI 263 (759)
Q Consensus 262 ~V 263 (759)
.|
T Consensus 137 ~v 138 (698)
T KOG2314|consen 137 FV 138 (698)
T ss_pred Ee
Confidence 44
No 172
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.57 E-value=0.072 Score=56.56 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=48.7
Q ss_pred HHHHHHHhhccCCeEEEEec---CCC---CceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 293 NDDLRQIFGAYGEVKEIRET---PHK---RHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 293 eedLr~~Fs~fG~I~~v~i~---~~s---~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
++++++.+++||.|..|-|. +.. .--.||+|..+++|.+|+-.|||..++|+.+...+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 46789999999999887541 111 1237999999999999999999999999999877654
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.46 E-value=0.022 Score=59.50 Aligned_cols=60 Identities=32% Similarity=0.427 Sum_probs=49.8
Q ss_pred HHHHHHhh-ccCCeEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 294 DDLRQIFG-AYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 294 edLr~~Fs-~fG~I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
+++...|+ +||+|+++.+- ..-.|-.+|.|...++|++|+..||+..+.|++|...+.--
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45666666 89999988552 23467899999999999999999999999999999988743
No 174
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.15 E-value=0.045 Score=59.13 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=58.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCC--eEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGD--IRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~--I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
...+||+||-|.+|++||.+.....|- +.+++ ..+.+||||+|...+..+.++.++.|-.+.|+|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 468999999999999999998887663 33333 57899999999999999999999999999999875444
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.68 E-value=0.036 Score=57.98 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=47.3
Q ss_pred HHHHHhh-ccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 210 ELRSLFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 210 eLr~lFs-~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
+|...|+ +||+|+.+.+ -..-+|-+||.|...++|++|+..|++..|.|++|..++..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3334444 8999988753 12357889999999999999999999999999999999873
No 176
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.68 E-value=0.33 Score=55.37 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=53.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEe--C---CCcceEEEEEecCHHHHHHHHHH
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFE-QYGDIRTLYT--A---CKHRGFVMISYYDIRAARTAMRA 250 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs-~fG~I~~v~~--~---gksrGfAFVeF~~~e~A~kAi~~ 250 (759)
..-.+.+|||||+||.-++.+||..+|+ -||.|..+-+ . +-.+|-|-|.|.+..+=-+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3446789999999999999999999999 8999987753 2 34689999999999999999984
No 177
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.92 E-value=0.4 Score=46.29 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=56.4
Q ss_pred ccCccceEEeccCCCC----cHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 276 DVNQGTLVVFNLDASV----SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~----TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
+..-.||.|+=|..++ +-..+.+..+.||.|.+|...|+ .-+.|.|.|..+|.+|+.+.+. ..-|..+.+.|-
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR--QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC--ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3455688887665554 23344556678999999988654 4699999999999999999865 667888888886
Q ss_pred CC
Q 004350 352 RP 353 (759)
Q Consensus 352 ~~ 353 (759)
++
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 54
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.39 E-value=0.25 Score=52.59 Aligned_cols=73 Identities=18% Similarity=0.342 Sum_probs=53.9
Q ss_pred CcEEEEcCC--CCCCC---HHHHHHHhhccCCeEEEEeC---C---CcceEEEEEecCHHHHHHHHHHccccccCCceee
Q 004350 194 SRTLFVRNI--NSNVE---DLELRSLFEQYGDIRTLYTA---C---KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (759)
Q Consensus 194 ~rtLfVgNL--P~~vt---eeeLr~lFs~fG~I~~v~~~---g---ksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~ 262 (759)
.+.|..+|. +-.++ ++++++..++||.|..|.+. + ...--.||+|...++|.+|+-.|+|+.|.|+.+.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 344555554 22333 34677899999999988731 1 1123479999999999999999999999999988
Q ss_pred Eeec
Q 004350 263 IHFS 266 (759)
Q Consensus 263 V~~a 266 (759)
..|-
T Consensus 361 A~Fy 364 (378)
T KOG1996|consen 361 ACFY 364 (378)
T ss_pred heec
Confidence 8765
No 179
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.31 E-value=0.35 Score=49.07 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=45.6
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhC--CCeeCCcEEEEEecCCCc
Q 004350 293 NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN--RSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 293 eedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Ln--g~~i~G~~L~V~~a~~k~ 355 (759)
.+.|+++|..|+.+.....-+. -+-..|.|.+.++|.+|...|+ +..+.|..|+|-++.+..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s-FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS-FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT-TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred HHHHHHHHHhcCCceEEEEcCC-CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4789999999999888765432 3347999999999999999999 999999999999996543
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.08 E-value=0.18 Score=58.24 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=61.5
Q ss_pred CccceEEeccCCCCcHHHHHHHhhc-cCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCee---CCcEEEEEecCC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGA-YGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI---NGKRIKLEPSRP 353 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~-fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i---~G~~L~V~~a~~ 353 (759)
....|+|.||-..+|.-+|+.++.+ .|.|.+. ..-+-+.+|||.|.+.++|.+...+|||... +++.|.+.|...
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 3468999999999999999999994 5566555 3334466899999999999999999999865 568899888864
No 181
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.80 E-value=0.34 Score=48.81 Aligned_cols=79 Identities=8% Similarity=0.052 Sum_probs=51.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEE--e-----CCCcceEEEEEecCHHHHHHHHHHccccccCCc-
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQ-YGDI---RTLY--T-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 259 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~-fG~I---~~v~--~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr- 259 (759)
....+|.|++||++.|++++.+.... +++- ..+. . ....-.-|||.|.+.+++......++|..|.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999997777 6665 3332 1 112344699999999999999999999877433
Q ss_pred ----eeeEeecCCCC
Q 004350 260 ----KLDIHFSIPKD 270 (759)
Q Consensus 260 ----~L~V~~a~~k~ 270 (759)
+..|++|.-+.
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 45677775543
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.66 E-value=0.22 Score=57.40 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=61.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHcccccc---CCceeeEee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFE-QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRKLDIHF 265 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs-~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l---~gr~L~V~~ 265 (759)
....+..|+|.||=.-.|.-.|++++. ..|.|...++. +-+..|||.|.+.++|.+...+|+|..+ ..+.|.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH-HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 556788999999999999999999999 45566666543 6778899999999999999999998765 345566665
Q ss_pred c
Q 004350 266 S 266 (759)
Q Consensus 266 a 266 (759)
.
T Consensus 519 ~ 519 (718)
T KOG2416|consen 519 V 519 (718)
T ss_pred c
Confidence 4
No 183
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.54 E-value=0.49 Score=54.32 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=55.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccc--cccCCceeeEe
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQ--YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIH 264 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~--fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g--~~l~gr~L~V~ 264 (759)
+.-|.|.++-||..+..|+++.||.- |-++..|... ..---||.|++..+|+.|.+.|.. +.|.|++|..+
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa--~N~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--HNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--ecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 44578999999999999999999984 6677777642 122358999999999999998876 45778776543
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.44 E-value=0.95 Score=40.02 Aligned_cols=56 Identities=13% Similarity=0.290 Sum_probs=44.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccc
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 253 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g 253 (759)
+...+|. +|..+...||.++|+.||.|.--.+. -.-|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhcc
Confidence 4567777 99999999999999999999876654 35699999999999999998764
No 185
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.93 E-value=1.4 Score=42.80 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=58.9
Q ss_pred CCCCCCcEEEEcCCCCCCCH-HH---HHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 189 YGEHPSRTLFVRNINSNVED-LE---LRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vte-ee---Lr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
..+.+-.||.|+=|..++.. +| +....+.||+|..|..- .+..|.|.|.|..+|-+|+.+++. ...|..+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 34567789999877666543 34 44567789999998754 456799999999999999998876 6778888888
Q ss_pred ecC
Q 004350 265 FSI 267 (759)
Q Consensus 265 ~a~ 267 (759)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 853
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=89.35 E-value=1.5 Score=36.74 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=41.1
Q ss_pred cceEEeccCCCCcHHHHHHHhhcc---CCeEEEEecCCCCceEEEEECCHHHHHHHHHHh
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAY---GEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL 336 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~f---G~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~L 336 (759)
.+|+|++++ +++.++++.+|..| .....|...... -+=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 479999985 47778999999998 123455543333 3789999999999999865
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.16 E-value=1.5 Score=38.83 Aligned_cols=53 Identities=13% Similarity=0.286 Sum_probs=40.3
Q ss_pred ceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhC
Q 004350 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN 337 (759)
Q Consensus 281 tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Ln 337 (759)
..+|. .|..+...||.++|++||.|.--=+.. .-|||...+.+.|..|+..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 45555 899999999999999999986554543 349999999999999999885
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=89.12 E-value=0.95 Score=44.11 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=52.1
Q ss_pred CCCcEEEEcCCC-----CCCCHH----HHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceee
Q 004350 192 HPSRTLFVRNIN-----SNVEDL----ELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (759)
Q Consensus 192 ~~~rtLfVgNLP-----~~vtee----eLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~ 262 (759)
.++.||.|.=+. ...-++ +|.+.|..||++.-++..+ +.-+|.|.+-++|-+|+. ++|..+.|+.|.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 456777777665 223333 6778899999988777432 467899999999999999 999999999999
Q ss_pred EeecC
Q 004350 263 IHFSI 267 (759)
Q Consensus 263 V~~a~ 267 (759)
|+.-.
T Consensus 101 i~LKt 105 (146)
T PF08952_consen 101 IRLKT 105 (146)
T ss_dssp EEE--
T ss_pred EEeCC
Confidence 98643
No 189
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.36 E-value=2.1 Score=46.18 Aligned_cols=71 Identities=23% Similarity=0.328 Sum_probs=54.7
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcE-EEEEecC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR-IKLEPSR 352 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~-L~V~~a~ 352 (759)
+.=+-|.+.+..-.. -|..+|++||+|++... +....+-.|.|.++-+|++||.+ ||+.|+|-. |-|+...
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~-~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVT-PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeec-CCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 445777888776553 46678999999987754 36667999999999999999984 899999854 4455543
No 190
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=87.25 E-value=0.66 Score=51.30 Aligned_cols=72 Identities=22% Similarity=0.482 Sum_probs=58.0
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEecCC--------CCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~--------s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
+.|.|.||.+++|.++++.+|.-.|+|.++++.+. ....|||.|.|...+..|-. |..+.+=++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999976442 23579999999999888876 6666666677666554
Q ss_pred C
Q 004350 352 R 352 (759)
Q Consensus 352 ~ 352 (759)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.57 E-value=3.9 Score=34.26 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc----CCeEEEEeCCCcceEEEEEecCHHHHHHHHHHc
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQY----GDIRTLYTACKHRGFVMISYYDIRAARTAMRAL 251 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~f----G~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L 251 (759)
.+|+|+++. +.+.++|+.+|..| +...--.+... -|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 579999995 68999999999999 54322223222 3678899999999999865
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=84.14 E-value=2.4 Score=48.96 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=54.0
Q ss_pred CccceEEeccCCCCcHHHHHHHhhc--cCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCC--CeeCCcEEEE
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGA--YGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKL 348 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~--fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng--~~i~G~~L~V 348 (759)
..+.|.++-|+..+-.|+++.+|.. +-.+.+|...-. .-=||+|++..+|+.|.+.|.. ++|.||.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3467889999999999999999974 677888875321 1259999999999999998853 3677876654
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=83.52 E-value=0.5 Score=51.46 Aligned_cols=77 Identities=14% Similarity=0.314 Sum_probs=59.7
Q ss_pred ccceEEeccCCCCcHHHHH---HHhhccCCeEEEEecCCC--------CceEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 004350 279 QGTLVVFNLDASVSNDDLR---QIFGAYGEVKEIRETPHK--------RHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr---~~Fs~fG~I~~v~i~~~s--------~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~ 347 (759)
..-+||-+|+..+-++.+- +.|.+||.|..|.+.... ..-++|+|...++|..||...+|..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3457777888777555443 578899999998764321 12489999999999999999999999999988
Q ss_pred EEecCCCc
Q 004350 348 LEPSRPGG 355 (759)
Q Consensus 348 V~~a~~k~ 355 (759)
..+...+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 88876653
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=83.29 E-value=0.79 Score=51.88 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=58.5
Q ss_pred ceEEeccCCCC-cHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 281 TLVVFNLDASV-SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 281 tLfV~NLp~~~-TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
.|-+.-.++.. |.++|...|.+||+|..|.+.- +.-.|.|+|.+..+|-+|-. .++-.|+++-|+|.|-.+..
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~-~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY-SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccC-chhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 34444445554 5789999999999999998743 34679999999999977765 58999999999999998855
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=82.20 E-value=1.5 Score=44.18 Aligned_cols=73 Identities=7% Similarity=0.054 Sum_probs=48.4
Q ss_pred ccceEEeccCCCCcHHHHHHHhhc-cCCe---EEEE--ecC-----CCCceEEEEECCHHHHHHHHHHhCCCeeCC----
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGA-YGEV---KEIR--ETP-----HKRHHKFIEFYDVRAAEAALRALNRSDING---- 343 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~-fG~I---~~v~--i~~-----~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G---- 343 (759)
..+|.|++||+.+|++++.+.+++ ++.- ..+. ... ..-.-|+|.|.+.+++..-...++|+.+-.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 458999999999999999998887 6665 3333 111 112358999999999999999999986632
Q ss_pred -cEEEEEec
Q 004350 344 -KRIKLEPS 351 (759)
Q Consensus 344 -~~L~V~~a 351 (759)
....|++|
T Consensus 87 ~~~~~VE~A 95 (176)
T PF03467_consen 87 EYPAVVEFA 95 (176)
T ss_dssp EEEEEEEE-
T ss_pred CcceeEEEc
Confidence 24455555
No 196
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=81.35 E-value=1.4 Score=46.40 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=57.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCcceEEEEEecCHHHHHHHHHHcccccc----CCceeeEee
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPL----RRRKLDIHF 265 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l----~gr~L~V~~ 265 (759)
..|+|.||..-+.-+.|.+-|+.||+|.... ..++..+-++|+|...-.|.+|.+.+...-| .+++.-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6899999999999999999999999986533 3567888899999999999999998754433 344544443
No 197
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.09 E-value=2.4 Score=43.08 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=44.8
Q ss_pred CHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHcc--ccccCCceeeEeecCC
Q 004350 207 EDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSIP 268 (759)
Q Consensus 207 teeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~--g~~l~gr~L~V~~a~~ 268 (759)
..+.|+++|..|+.+..+... ++-+=..|.|.+.++|.+|...|+ +..+.|..+++.|+.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 347899999999998887654 444456889999999999999999 8899999999999844
No 198
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=80.10 E-value=1.5 Score=42.17 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=71.6
Q ss_pred CCHHHHHHHh----hccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCCCCCCccC--c
Q 004350 206 VEDLELRSLF----EQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVN--Q 279 (759)
Q Consensus 206 vteeeLr~lF----s~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~~~~~~~~--~ 279 (759)
.+-..|...+ ...|.+.-.. -..++..++|.+.+++.++++ .....+.+..+.++.-.+...+.+.... .
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~---l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~ 104 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRD---LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIP 104 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEE---eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccc
Confidence 4455555444 4445444333 356899999999999999998 4556678887777655544443332222 2
Q ss_pred cceEEeccCCC-CcHHHHHHHhhccCCeEEEEecC
Q 004350 280 GTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETP 313 (759)
Q Consensus 280 ~tLfV~NLp~~-~TeedLr~~Fs~fG~I~~v~i~~ 313 (759)
-=|.|.|||.. .+++-|+++-+.+|++..++...
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 23667799987 68888999999999999998643
No 199
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.01 E-value=2.9 Score=45.05 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=53.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCc-eeeEeec
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDIHFS 266 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr-~L~V~~a 266 (759)
+.=|-|-++|+.-. .-|..+|++||+|++... ....-+-+|.|.+.-+|++|+. .+|+.|.|. .|-|+.+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~-~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT-PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeec-CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 45566677876654 456679999999999864 4667799999999999999998 688887664 3445543
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=78.85 E-value=0.92 Score=49.49 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=58.6
Q ss_pred CcEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEeCCCc--------ceEEEEEecCHHHHHHHHHHccccccCCceee
Q 004350 194 SRTLFVRNINSNVEDLELR---SLFEQYGDIRTLYTACKH--------RGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr---~lFs~fG~I~~v~~~gks--------rGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~ 262 (759)
.+-+||-+|+..+.++++. +.|.+||.|..|.+.... ..-+||.|...++|..||...+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888888887666654 589999999998743211 12389999999999999999999999999877
Q ss_pred EeecCC
Q 004350 263 IHFSIP 268 (759)
Q Consensus 263 V~~a~~ 268 (759)
..+...
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 776543
No 201
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=74.31 E-value=4 Score=36.56 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=46.6
Q ss_pred EEEEecCHHHHHHHHHHcccc-ccCCceeeEeecCCCCCC-----CCCccCccceEEeccCCCCcHHHHHHHhh
Q 004350 234 VMISYYDIRAARTAMRALQNK-PLRRRKLDIHFSIPKDNP-----SEKDVNQGTLVVFNLDASVSNDDLRQIFG 301 (759)
Q Consensus 234 AFVeF~~~e~A~kAi~~L~g~-~l~gr~L~V~~a~~k~~~-----~~~~~~~~tLfV~NLp~~~TeedLr~~Fs 301 (759)
|+|.|.++.-|++-++.-... .+.+..+.|+-..-.... .......++|-|.|||....+++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999843332 355666666543221111 11344567999999999999999987654
No 202
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=73.75 E-value=3 Score=49.26 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=60.9
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
..++||+|+...+.++-++.+...+|.|.++.... |||.+|..+..+..|+..++-..++|+.+.+..
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45899999999999999999999999999886542 999999999999999999998899998877654
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=73.59 E-value=25 Score=32.81 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=48.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEe---CCCcceEEEEEecCHHHHHHHHHHccccccCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRR 258 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~-I~~v~~---~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g 258 (759)
.+....+.+...|+-++.++|..+.+.+-+ |..+++ ..+.+=.+++.|.+.++|+.-.+.+||+.|..
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344556666666677777788777666654 333332 33467789999999999999999999998854
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=73.44 E-value=2.3 Score=51.29 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=59.7
Q ss_pred ceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCee--CCcEEEEEecCCC
Q 004350 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI--NGKRIKLEPSRPG 354 (759)
Q Consensus 281 tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i--~G~~L~V~~a~~k 354 (759)
+.++.|..-.++-.-|..+|.+||.|.++..- +.-..+.|+|...+.|..|+.+|+|+++ -|-..+|.+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 45566667778888999999999999998752 2235699999999999999999999976 4778888888753
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=69.47 E-value=2.7 Score=47.72 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=62.9
Q ss_pred CCCCcEEEEcCCCCCCC-HHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 191 EHPSRTLFVRNINSNVE-DLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vt-eeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
..+.+.|-+.-.|.... -++|...|.+||+|..|.+.. +---|.|.|.+..+|-+|.+ .++..|.++.|+|.|-.+.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~-~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY-SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC-chhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 34566777777777765 578999999999999998653 34568999999999988877 7899999999999998653
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=66.76 E-value=21 Score=30.47 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHhhccCC-----eEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 289 ASVSNDDLRQIFGAYGE-----VKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 289 ~~~TeedLr~~Fs~fG~-----I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
..++..+|..++..-+. |-.|++. ..|.||+-.. +.|..+++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35677788888876644 4456663 4689998764 4789999999999999999999875
No 207
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=65.35 E-value=4.2 Score=49.24 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=60.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHcccccc--CCceeeEeecCC
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL--RRRKLDIHFSIP 268 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l--~gr~L~V~~a~~ 268 (759)
.+.++-|.+-+.+..-|..+|.+||.|...+.. +.--.|.|+|...+.|..|+.+|+|+.+ -|-+.+|-++..
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 355666777788889999999999999998753 4566899999999999999999999875 577888877643
No 208
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=61.15 E-value=62 Score=30.20 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=44.2
Q ss_pred ceEEeccCCCCcHHHHHHHhhcc-CCeEEEEecCC---CCceEEEEECCHHHHHHHHHHhCCCeeCC
Q 004350 281 TLVVFNLDASVSNDDLRQIFGAY-GEVKEIRETPH---KRHHKFIEFYDVRAAEAALRALNRSDING 343 (759)
Q Consensus 281 tLfV~NLp~~~TeedLr~~Fs~f-G~I~~v~i~~~---s~GfgFVeF~~~e~A~~Al~~Lng~~i~G 343 (759)
.+.+-..|.-++-++|..+.+.+ ..|..+++... .+--+.++|.+.++|.+-.+..||+.+..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444455556667777666666 44566666333 23468999999999999999999998753
No 209
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=54.42 E-value=11 Score=38.16 Aligned_cols=74 Identities=23% Similarity=0.320 Sum_probs=50.2
Q ss_pred ceEEeccCCCC-cH----HHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCc-EEEEEecCCC
Q 004350 281 TLVVFNLDASV-SN----DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGK-RIKLEPSRPG 354 (759)
Q Consensus 281 tLfV~NLp~~~-Te----edLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~-~L~V~~a~~k 354 (759)
++++.+++..+ ++ .....+|..|-+....++. ++.++.-|-|.+++.|..|...++...+.|+ .+++-++++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 46666776543 22 2334555555443333322 3345677889999999999999999999998 8888888765
Q ss_pred c
Q 004350 355 G 355 (759)
Q Consensus 355 ~ 355 (759)
-
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 3
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=53.56 E-value=9 Score=45.41 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=61.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
.+..++||+|+...+..+-++.+...+|-|..+... -|+|..|.....+.+|+..+.-..+.|+.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~----~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD----KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh----hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 456799999999999999999999999999887532 1999999999999999999998889888877654
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=51.18 E-value=60 Score=27.55 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=43.5
Q ss_pred CCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 004350 290 SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 348 (759)
Q Consensus 290 ~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V 348 (759)
.++-++++..+..|+- ..|.. ...|| ||.|.+.++|+++.+..+|..+-+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999964 44443 24453 89999999999999999999888777654
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=48.63 E-value=61 Score=27.66 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=34.6
Q ss_pred CCCHHHHHHHhhccCC-----eEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 205 NVEDLELRSLFEQYGD-----IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 205 ~vteeeLr~lFs~fG~-----I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
.++..+|..++...+. |-.|.+. ..|+||+-.. +.|+.++..|++..+.|+++.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5778888888887654 5566553 3578888554 5899999999999999999999864
No 213
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.86 E-value=84 Score=37.15 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=60.6
Q ss_pred CCCCCCcEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEe---------------CCC-------------c-----
Q 004350 189 YGEHPSRTLFVRNINSN-VEDLELRSLFEQY----GDIRTLYT---------------ACK-------------H----- 230 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~-vteeeLr~lFs~f----G~I~~v~~---------------~gk-------------s----- 230 (759)
.....+++|-|.|+.|+ +..++|..+|..| |.|..|.+ .|+ +
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34567899999999998 7788999998855 47877752 232 0
Q ss_pred -------------------ceEEEEEecCHHHHHHHHHHccccccC--CceeeEeec
Q 004350 231 -------------------RGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFS 266 (759)
Q Consensus 231 -------------------rGfAFVeF~~~e~A~kAi~~L~g~~l~--gr~L~V~~a 266 (759)
-=||.|+|.+++.|.+....+.|..|. +..|.+.|.
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 127999999999999999999999986 456667765
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.95 E-value=84 Score=37.14 Aligned_cols=74 Identities=18% Similarity=0.290 Sum_probs=57.7
Q ss_pred CccceEEeccCCC-CcHHHHHHHhhcc----CCeEEEEe---------------cCC-------------C---------
Q 004350 278 NQGTLVVFNLDAS-VSNDDLRQIFGAY----GEVKEIRE---------------TPH-------------K--------- 315 (759)
Q Consensus 278 ~~~tLfV~NLp~~-~TeedLr~~Fs~f----G~I~~v~i---------------~~~-------------s--------- 315 (759)
.+++|-|-||+++ +.-.+|.-+|..| |.|.+|.| .+. +
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4578999999997 6788999998865 58888854 111 0
Q ss_pred ---------------CceEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEEec
Q 004350 316 ---------------RHHKFIEFYDVRAAEAALRALNRSDIN--GKRIKLEPS 351 (759)
Q Consensus 316 ---------------~GfgFVeF~~~e~A~~Al~~Lng~~i~--G~~L~V~~a 351 (759)
--||.|+|.+.+.|.+.....+|.++. +..|.+.|-
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 127999999999999999999999986 456666554
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=43.22 E-value=79 Score=26.83 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=42.5
Q ss_pred CCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 205 NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 205 ~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
.++-++++..+..|+-.. |+. ...|| ||.|.+.++|++++...+++.+..-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-I~~--d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-IRD--DRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce-EEe--cCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999998543 322 23344 79999999999999999998877666554
No 216
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=41.49 E-value=95 Score=35.68 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=54.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC----CeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCC
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYG----DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR 258 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG----~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g 258 (759)
++.|+|--+|..++-.||..+...+= .|+-|+..-+.+=.++|.|.+.++|......++|+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 89999999999999999999887653 344444334567789999999999999999999998864
No 217
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=35.62 E-value=29 Score=35.13 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=52.3
Q ss_pred cEEEEcCCCCCCCHH-----HHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCc-eeeEeecCC
Q 004350 195 RTLFVRNINSNVEDL-----ELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDIHFSIP 268 (759)
Q Consensus 195 rtLfVgNLP~~vtee-----eLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr-~L~V~~a~~ 268 (759)
.++.+.+|+..+-.+ ....+|.+|-+.....+. ++.+..-|.|.+++.|..|...++...|.|+ .+..-++.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 457777777654332 233566666554443332 5677788999999999999999999999988 777777754
Q ss_pred C
Q 004350 269 K 269 (759)
Q Consensus 269 k 269 (759)
.
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 3
No 218
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=34.48 E-value=15 Score=39.29 Aligned_cols=62 Identities=27% Similarity=0.485 Sum_probs=43.0
Q ss_pred cEEEEcCCCCC------------CCHHHHHHHhhccCCeEEEEe----------CCC-----cceE---------EEEEe
Q 004350 195 RTLFVRNINSN------------VEDLELRSLFEQYGDIRTLYT----------ACK-----HRGF---------VMISY 238 (759)
Q Consensus 195 rtLfVgNLP~~------------vteeeLr~lFs~fG~I~~v~~----------~gk-----srGf---------AFVeF 238 (759)
.||++.+||-. -+++-|+..|+.||.|+.|.+ +++ .+|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 47777777733 356779999999999998862 233 2344 45667
Q ss_pred cCHHHHHHHHHHcccccc
Q 004350 239 YDIRAARTAMRALQNKPL 256 (759)
Q Consensus 239 ~~~e~A~kAi~~L~g~~l 256 (759)
..-..-..|+.+|.|.++
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 666667778887777654
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=31.76 E-value=1.2e+02 Score=34.92 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=52.5
Q ss_pred ccceEEeccCCCCcHHHHHHHhhcc-CCeEEEEecCCC---CceEEEEECCHHHHHHHHHHhCCCeeCC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAY-GEVKEIRETPHK---RHHKFIEFYDVRAAEAALRALNRSDING 343 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~f-G~I~~v~i~~~s---~GfgFVeF~~~e~A~~Al~~Lng~~i~G 343 (759)
...|.|-.+|..+|-.||-.++..+ -.|..+++.... +-...|+|.+.++|..-.+.+||+.+.-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999999999876 456666653333 2247999999999999999999998753
No 220
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=28.73 E-value=22 Score=30.69 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=9.8
Q ss_pred CCCCccccccccccCc
Q 004350 465 GKDQGRANQTNHMFSN 480 (759)
Q Consensus 465 ~~~~~~~~~~~~~f~~ 480 (759)
...++.|.+++|||+-
T Consensus 50 ~~~aS~C~lLkNMFDP 65 (73)
T PF15519_consen 50 PPIASRCFLLKNMFDP 65 (73)
T ss_dssp -S---SEEEEESSS-T
T ss_pred CCCCCceeeeecCCCc
Confidence 3478899999999995
No 221
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.15 E-value=36 Score=36.47 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=25.1
Q ss_pred cceEEeccCCC------------CcHHHHHHHhhccCCeEEEEe
Q 004350 280 GTLVVFNLDAS------------VSNDDLRQIFGAYGEVKEIRE 311 (759)
Q Consensus 280 ~tLfV~NLp~~------------~TeedLr~~Fs~fG~I~~v~i 311 (759)
.||++-+||-. -+++.|+..|+.||.|..|.+
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 46777777643 357889999999999999864
No 222
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.20 E-value=1.9e+02 Score=32.76 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=42.4
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCe-EEEEecCCCCceEEEEECCHHHHHHHHH
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEV-KEIRETPHKRHHKFIEFYDVRAAEAALR 334 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I-~~v~i~~~s~GfgFVeF~~~e~A~~Al~ 334 (759)
...|-|.++|.....+||...|+.|++- -.|+.. -.-++|-.|.+...|..||-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv--DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV--DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEe--ecceeEEeecchHHHHHHhh
Confidence 4578999999999999999999999641 223222 23479999999999999997
No 223
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=20.54 E-value=1.6e+02 Score=24.76 Aligned_cols=18 Identities=44% Similarity=0.861 Sum_probs=16.1
Q ss_pred HHHHHHhhccCCeEEEEe
Q 004350 209 LELRSLFEQYGDIRTLYT 226 (759)
Q Consensus 209 eeLr~lFs~fG~I~~v~~ 226 (759)
++||++|+..|+|..+++
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999998874
Done!