Query 004350
Match_columns 759
No_of_seqs 591 out of 3201
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 22:25:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2E-30 6.9E-35 263.3 18.8 166 191-358 12-185 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 4.2E-29 1.4E-33 240.0 20.0 157 195-353 1-166 (166)
3 3smz_A Protein raver-1, ribonu 100.0 1.7E-28 5.9E-33 258.4 21.4 235 101-362 27-272 (284)
4 1fxl_A Paraneoplastic encephal 100.0 2.6E-28 8.8E-33 234.7 20.3 155 193-351 1-167 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.5E-28 8.5E-33 235.7 19.5 155 193-351 2-168 (168)
6 3smz_A Protein raver-1, ribonu 100.0 1.1E-28 3.7E-33 260.0 17.3 201 192-419 20-234 (284)
7 1l3k_A Heterogeneous nuclear r 100.0 2.9E-28 9.9E-33 241.5 19.4 168 189-358 8-187 (196)
8 2qfj_A FBP-interacting repress 100.0 2.7E-28 9.1E-33 245.4 18.4 164 193-356 27-207 (216)
9 1fje_B Nucleolin RBD12, protei 100.0 8.6E-29 2.9E-33 241.5 13.4 162 190-354 9-174 (175)
10 2adc_A Polypyrimidine tract-bi 100.0 1.1E-27 3.7E-32 245.9 21.8 164 191-354 31-228 (229)
11 3pgw_A U1-A; protein-RNA compl 100.0 1.1E-27 3.7E-32 252.1 22.4 164 190-353 5-282 (282)
12 2g4b_A Splicing factor U2AF 65 100.0 5.7E-28 2E-32 234.4 17.8 154 192-351 2-171 (172)
13 2ghp_A U4/U6 snRNA-associated 100.0 3.9E-28 1.3E-32 256.7 17.0 226 101-354 46-291 (292)
14 3tyt_A Heterogeneous nuclear r 100.0 1.1E-27 3.8E-32 242.9 19.0 159 193-351 3-204 (205)
15 2cjk_A Nuclear polyadenylated 100.0 3.1E-28 1.1E-32 235.1 13.6 155 193-354 2-166 (167)
16 1qm9_A Polypyrimidine tract-bi 100.0 8.5E-28 2.9E-32 239.6 16.9 162 193-354 2-197 (198)
17 3nmr_A Cugbp ELAV-like family 100.0 2.7E-27 9.1E-32 229.7 19.7 157 193-352 2-175 (175)
18 2yh0_A Splicing factor U2AF 65 100.0 1.5E-27 5.2E-32 236.7 18.0 162 193-356 3-196 (198)
19 2ghp_A U4/U6 snRNA-associated 100.0 7E-28 2.4E-32 254.8 16.5 205 188-419 35-262 (292)
20 3sde_A Paraspeckle component 1 99.9 1.9E-25 6.4E-30 233.8 18.4 155 191-356 19-181 (261)
21 2i2y_A Fusion protein consists 99.8 1.2E-19 4.1E-24 174.0 13.3 127 228-355 10-149 (150)
22 2kn4_A Immunoglobulin G-bindin 99.8 7.6E-19 2.6E-23 169.5 16.0 130 227-356 9-152 (158)
23 4f25_A Polyadenylate-binding p 99.8 1E-18 3.6E-23 160.6 10.7 103 193-295 4-113 (115)
24 4fxv_A ELAV-like protein 1; RN 99.7 1.8E-16 6E-21 142.2 10.1 76 278-353 18-98 (99)
25 2lea_A Serine/arginine-rich sp 99.6 2.3E-16 7.9E-21 149.3 8.2 121 232-357 5-130 (135)
26 4fxv_A ELAV-like protein 1; RN 99.6 5.1E-16 1.7E-20 139.1 10.0 76 193-268 18-98 (99)
27 3s8s_A Histone-lysine N-methyl 99.6 8.1E-16 2.8E-20 140.6 11.3 83 278-360 5-92 (110)
28 3lqv_A PRE-mRNA branch site pr 99.6 2.6E-16 9E-21 143.7 7.5 103 191-305 5-109 (115)
29 4f25_A Polyadenylate-binding p 99.6 1E-15 3.5E-20 140.6 9.9 80 279-358 5-87 (115)
30 3tyt_A Heterogeneous nuclear r 99.6 5.8E-16 2E-20 156.7 8.4 76 278-353 3-79 (205)
31 4f02_A Polyadenylate-binding p 99.6 4.3E-16 1.5E-20 157.7 7.4 128 277-419 13-151 (213)
32 2hvz_A Splicing factor, argini 99.6 1.3E-15 4.5E-20 135.8 9.1 95 195-289 1-101 (101)
33 3r27_A HnRNP L, heterogeneous 99.6 2.9E-15 9.9E-20 134.8 10.5 80 190-270 17-98 (100)
34 2lxi_A RNA-binding protein 10; 99.6 8.9E-16 3E-20 135.3 6.1 77 280-356 2-85 (91)
35 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.5E-15 8.6E-20 146.5 9.9 123 236-358 11-156 (165)
36 1sjq_A Polypyrimidine tract-bi 99.6 3.8E-15 1.3E-19 135.3 10.1 83 190-273 12-96 (105)
37 1whw_A Hypothetical protein ri 99.6 6.8E-15 2.3E-19 130.6 11.3 81 277-357 6-91 (99)
38 2lxi_A RNA-binding protein 10; 99.6 1.4E-15 4.8E-20 134.0 6.8 79 194-272 1-86 (91)
39 1whw_A Hypothetical protein ri 99.6 1.1E-14 3.6E-19 129.4 12.5 82 191-272 5-91 (99)
40 3s8s_A Histone-lysine N-methyl 99.6 6.2E-15 2.1E-19 134.7 11.0 79 191-269 3-86 (110)
41 1fxl_A Paraneoplastic encephal 99.6 1.7E-15 5.8E-20 145.0 7.4 126 279-419 2-138 (167)
42 3lqv_A PRE-mRNA branch site pr 99.6 7.3E-15 2.5E-19 134.1 11.3 102 278-383 7-110 (115)
43 2wbr_A GW182, gawky, LD47780P; 99.6 4.3E-15 1.5E-19 130.1 9.1 73 279-352 7-79 (89)
44 3md1_A Nuclear and cytoplasmic 99.6 7.7E-15 2.6E-19 125.7 10.3 76 280-355 2-82 (83)
45 2do4_A Squamous cell carcinoma 99.6 1.1E-14 3.7E-19 129.7 11.6 81 276-356 14-98 (100)
46 1x4a_A Splicing factor, argini 99.6 1.3E-14 4.5E-19 131.3 12.2 81 276-356 19-101 (109)
47 2lkz_A RNA-binding protein 5; 99.6 2E-15 7E-20 134.5 6.7 75 279-353 9-94 (95)
48 1sjq_A Polypyrimidine tract-bi 99.6 4.2E-15 1.4E-19 135.0 8.7 79 278-357 15-95 (105)
49 3bs9_A Nucleolysin TIA-1 isofo 99.6 7.7E-15 2.6E-19 126.8 9.9 77 278-354 5-86 (87)
50 1x5u_A Splicing factor 3B subu 99.6 1.1E-14 3.7E-19 130.6 11.2 83 275-357 11-98 (105)
51 1wex_A Hypothetical protein (r 99.6 1.3E-14 4.4E-19 131.5 11.6 82 189-271 10-93 (104)
52 2cph_A RNA binding motif prote 99.6 1.5E-14 5E-19 130.1 11.7 83 275-357 11-100 (107)
53 3r27_A HnRNP L, heterogeneous 99.6 8.2E-15 2.8E-19 131.9 9.9 77 278-355 20-98 (100)
54 2cqc_A Arginine/serine-rich sp 99.6 1.5E-14 5.1E-19 127.1 11.4 79 276-354 12-95 (95)
55 2ad9_A Polypyrimidine tract-bi 99.6 1.1E-14 3.7E-19 135.2 11.0 85 188-273 25-111 (119)
56 1x5u_A Splicing factor 3B subu 99.6 2.1E-14 7.1E-19 128.8 12.3 83 189-271 10-97 (105)
57 2cph_A RNA binding motif prote 99.6 2.3E-14 7.7E-19 128.9 12.5 84 189-272 10-100 (107)
58 2cpz_A CUG triplet repeat RNA- 99.6 9.5E-15 3.2E-19 133.5 10.1 81 277-357 23-108 (115)
59 2d9p_A Polyadenylate-binding p 99.6 1.3E-14 4.4E-19 129.9 10.7 84 275-358 11-97 (103)
60 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.2E-14 7.6E-19 128.3 12.2 83 276-358 12-97 (103)
61 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.1E-14 3.9E-19 125.7 10.0 78 192-269 4-86 (87)
62 2dgo_A Cytotoxic granule-assoc 99.6 3.3E-14 1.1E-18 129.7 13.5 84 189-272 10-98 (115)
63 2do4_A Squamous cell carcinoma 99.6 2.6E-14 8.9E-19 127.2 12.5 81 190-270 13-97 (100)
64 1x4d_A Matrin 3; structural ge 99.6 1E-14 3.5E-19 131.8 9.8 80 190-270 11-93 (102)
65 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.4E-14 4.7E-19 124.7 10.2 75 278-352 6-85 (85)
66 2dgs_A DAZ-associated protein 99.6 2.8E-14 9.6E-19 126.7 12.6 82 190-272 6-92 (99)
67 2x1f_A MRNA 3'-END-processing 99.6 2.2E-14 7.5E-19 126.8 11.8 80 279-358 2-86 (96)
68 3md1_A Nuclear and cytoplasmic 99.6 1.6E-14 5.5E-19 123.7 10.5 77 194-270 1-82 (83)
69 2cq0_A Eukaryotic translation 99.5 1.1E-14 3.9E-19 130.2 9.9 83 275-357 11-98 (103)
70 2cq0_A Eukaryotic translation 99.5 2E-14 6.7E-19 128.7 11.3 83 189-271 10-97 (103)
71 2dnz_A Probable RNA-binding pr 99.5 1.8E-14 6.2E-19 126.7 10.8 80 278-357 4-88 (95)
72 1x4h_A RNA-binding protein 28; 99.5 2.5E-14 8.6E-19 129.4 12.0 82 277-358 13-105 (111)
73 2dgs_A DAZ-associated protein 99.5 2E-14 6.7E-19 127.7 11.1 80 277-357 8-92 (99)
74 2cpf_A RNA binding motif prote 99.5 1.8E-14 6.1E-19 127.6 10.8 81 192-272 3-91 (98)
75 2dnh_A Bruno-like 5, RNA bindi 99.5 4.3E-14 1.5E-18 126.7 13.4 83 190-272 11-100 (105)
76 2dgx_A KIAA0430 protein; RRM d 99.5 2.1E-14 7.2E-19 127.3 11.1 79 278-356 8-92 (96)
77 2e5h_A Zinc finger CCHC-type a 99.5 2.6E-14 9E-19 125.4 11.6 76 277-352 14-94 (94)
78 2dnz_A Probable RNA-binding pr 99.5 2.5E-14 8.6E-19 125.8 11.5 81 192-272 3-88 (95)
79 2cjk_A Nuclear polyadenylated 99.5 2.3E-15 8E-20 144.7 5.2 76 193-269 86-166 (167)
80 2dgv_A HnRNP M, heterogeneous 99.5 2.6E-14 8.8E-19 125.0 11.4 81 191-271 5-88 (92)
81 2jvr_A Nucleolar protein 3; RN 99.5 1.1E-14 3.8E-19 133.5 9.4 78 278-355 27-106 (111)
82 2cq1_A PTB-like protein L; RRM 99.5 2.6E-14 8.7E-19 128.9 11.6 82 189-271 10-93 (101)
83 2d9p_A Polyadenylate-binding p 99.5 2.8E-14 9.7E-19 127.6 11.8 83 190-272 11-96 (103)
84 2dgo_A Cytotoxic granule-assoc 99.5 2.5E-14 8.6E-19 130.5 11.6 82 276-357 12-98 (115)
85 1why_A Hypothetical protein ri 99.5 2.1E-14 7.3E-19 127.2 10.8 78 278-356 16-95 (97)
86 1p27_B RNA-binding protein 8A; 99.5 2E-14 6.7E-19 129.2 10.6 81 190-270 19-104 (106)
87 2dnq_A RNA-binding protein 4B; 99.5 1.9E-14 6.6E-19 125.7 10.3 78 277-357 6-83 (90)
88 2x1f_A MRNA 3'-END-processing 99.5 1.9E-14 6.4E-19 127.3 10.3 78 193-270 1-83 (96)
89 1oo0_B CG8781-PA, drosophila Y 99.5 1.8E-14 6E-19 130.5 10.3 82 276-357 23-109 (110)
90 2cq1_A PTB-like protein L; RRM 99.5 3E-14 1E-18 128.4 11.7 80 277-357 13-94 (101)
91 2cpf_A RNA binding motif prote 99.5 1.3E-14 4.5E-19 128.5 9.1 80 278-357 4-91 (98)
92 2cpz_A CUG triplet repeat RNA- 99.5 2.2E-14 7.4E-19 131.1 10.9 84 189-272 20-108 (115)
93 1x4a_A Splicing factor, argini 99.5 3.9E-14 1.3E-18 128.1 12.4 82 190-271 18-101 (109)
94 2dnm_A SRP46 splicing factor; 99.5 2.2E-14 7.7E-19 128.3 10.7 83 189-271 8-95 (103)
95 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.6E-14 5.4E-19 128.9 9.6 81 277-357 10-95 (102)
96 2cqi_A Nucleolysin TIAR; RNA r 99.5 4.1E-14 1.4E-18 126.6 12.3 83 189-271 10-95 (103)
97 2dnh_A Bruno-like 5, RNA bindi 99.5 2.7E-14 9.1E-19 128.1 11.0 82 277-358 13-101 (105)
98 1p27_B RNA-binding protein 8A; 99.5 1.5E-14 5.2E-19 129.9 9.3 80 276-355 20-104 (106)
99 1x4h_A RNA-binding protein 28; 99.5 4.3E-14 1.5E-18 127.9 12.3 83 190-272 11-104 (111)
100 2cq3_A RNA-binding protein 9; 99.5 4.2E-14 1.4E-18 126.5 12.1 83 275-357 11-96 (103)
101 4a8x_A RNA-binding protein wit 99.5 1.9E-14 6.6E-19 124.4 9.5 78 278-355 3-86 (88)
102 1x4d_A Matrin 3; structural ge 99.5 1.6E-14 5.5E-19 130.5 9.3 77 278-355 14-93 (102)
103 2dnm_A SRP46 splicing factor; 99.5 1.7E-14 6E-19 129.0 9.4 80 277-356 11-95 (103)
104 1x5s_A Cold-inducible RNA-bind 99.5 1.4E-14 4.7E-19 129.3 8.7 80 278-357 11-95 (102)
105 2cq3_A RNA-binding protein 9; 99.5 6.6E-14 2.3E-18 125.2 13.2 84 189-272 10-96 (103)
106 2jrs_A RNA-binding protein 39; 99.5 2.1E-14 7.3E-19 130.4 10.1 81 275-355 22-107 (108)
107 3pgw_S U1-70K; protein-RNA com 99.5 3.4E-15 1.2E-19 167.6 5.9 145 211-355 9-183 (437)
108 3p5t_L Cleavage and polyadenyl 99.5 4.6E-15 1.6E-19 129.9 5.4 77 280-356 2-85 (90)
109 2ywk_A Putative RNA-binding pr 99.5 2.3E-14 7.7E-19 126.1 9.9 78 277-354 14-95 (95)
110 3sde_A Paraspeckle component 1 99.5 5.8E-15 2E-19 154.1 7.2 126 276-419 19-145 (261)
111 3mdf_A Peptidyl-prolyl CIS-tra 99.5 2.3E-14 7.9E-19 123.3 9.7 76 191-266 4-84 (85)
112 2dnq_A RNA-binding protein 4B; 99.5 3.9E-14 1.3E-18 123.7 11.2 79 191-272 5-83 (90)
113 1fjc_A Nucleolin RBD2, protein 99.5 1.2E-14 4.2E-19 128.2 8.1 82 276-357 13-94 (96)
114 1wf1_A RNA-binding protein RAL 99.5 1.6E-14 5.5E-19 131.0 9.1 96 256-355 5-101 (110)
115 2dgt_A RNA-binding protein 30; 99.5 3.4E-14 1.2E-18 124.6 10.9 79 276-357 7-85 (92)
116 2qfj_A FBP-interacting repress 99.5 3E-14 1E-18 142.6 12.0 81 192-272 123-208 (216)
117 2dnp_A RNA-binding protein 14; 99.5 3.8E-14 1.3E-18 123.8 10.9 78 276-356 6-83 (90)
118 2dgv_A HnRNP M, heterogeneous 99.5 1.9E-14 6.6E-19 125.8 9.0 79 278-356 7-88 (92)
119 1l3k_A Heterogeneous nuclear r 99.5 2.5E-14 8.4E-19 141.1 10.8 80 192-272 102-186 (196)
120 1x5s_A Cold-inducible RNA-bind 99.5 3.4E-14 1.2E-18 126.7 10.7 82 190-271 8-94 (102)
121 1x5t_A Splicing factor 3B subu 99.5 2E-14 6.8E-19 126.7 9.0 81 192-272 3-89 (96)
122 2wbr_A GW182, gawky, LD47780P; 99.5 1.6E-14 5.5E-19 126.5 8.2 73 193-266 6-78 (89)
123 2jrs_A RNA-binding protein 39; 99.5 3.6E-14 1.2E-18 128.9 10.9 82 189-270 21-107 (108)
124 2yh0_A Splicing factor U2AF 65 99.5 7.7E-14 2.6E-18 137.8 14.1 166 101-271 9-196 (198)
125 1x5t_A Splicing factor 3B subu 99.5 1.6E-14 5.4E-19 127.4 8.2 80 278-357 4-89 (96)
126 2cqc_A Arginine/serine-rich sp 99.5 3.7E-14 1.3E-18 124.6 10.5 78 190-267 11-93 (95)
127 2g4b_A Splicing factor U2AF 65 99.5 3.3E-14 1.1E-18 137.3 11.2 153 101-266 9-171 (172)
128 2jvo_A Nucleolar protein 3; nu 99.5 2.2E-14 7.5E-19 130.4 9.3 80 275-357 27-106 (108)
129 2e5h_A Zinc finger CCHC-type a 99.5 3.7E-14 1.2E-18 124.5 10.4 78 190-267 12-94 (94)
130 2cqb_A Peptidyl-prolyl CIS-tra 99.5 2.8E-14 9.4E-19 127.3 9.8 82 191-272 9-95 (102)
131 2dgp_A Bruno-like 4, RNA bindi 99.5 4.2E-14 1.4E-18 127.0 11.0 82 190-271 9-98 (106)
132 2la4_A Nuclear and cytoplasmic 99.5 1.8E-14 6.2E-19 128.4 8.4 76 278-354 26-101 (101)
133 2a3j_A U1 small nuclear ribonu 99.5 3.2E-14 1.1E-18 133.5 10.5 81 278-358 28-114 (127)
134 2dgp_A Bruno-like 4, RNA bindi 99.5 2.5E-14 8.6E-19 128.5 9.4 83 275-357 9-99 (106)
135 1wex_A Hypothetical protein (r 99.5 3.1E-14 1.1E-18 128.9 10.1 78 278-356 14-93 (104)
136 1u6f_A Tcubp1, RNA-binding pro 99.5 3E-14 1E-18 134.3 10.4 82 276-357 39-125 (139)
137 1whx_A Hypothetical protein ri 99.5 1.5E-14 5E-19 132.1 8.0 78 191-269 7-84 (111)
138 3md3_A Nuclear and cytoplasmic 99.5 3.1E-14 1E-18 136.1 10.6 78 190-267 83-165 (166)
139 2dgu_A Heterogeneous nuclear r 99.5 4.2E-14 1.4E-18 126.8 10.8 78 278-358 10-87 (103)
140 2xnq_A Nuclear polyadenylated 99.5 5.1E-14 1.7E-18 125.4 11.2 76 277-355 20-96 (97)
141 2cpd_A Apobec-1 stimulating pr 99.5 6.9E-14 2.4E-18 124.3 12.1 77 277-356 13-91 (99)
142 2cq4_A RNA binding motif prote 99.5 1.4E-14 4.6E-19 132.2 7.6 80 277-357 23-107 (114)
143 3ns6_A Eukaryotic translation 99.5 8.6E-15 2.9E-19 131.0 6.1 76 279-354 6-93 (100)
144 2ytc_A PRE-mRNA-splicing facto 99.5 3.6E-14 1.2E-18 122.2 9.8 77 189-266 7-84 (85)
145 2lkz_A RNA-binding protein 5; 99.5 1.4E-14 4.8E-19 129.1 7.4 77 191-267 6-93 (95)
146 1x4g_A Nucleolysin TIAR; struc 99.5 3.7E-14 1.3E-18 128.4 10.3 80 277-357 23-102 (109)
147 2dhg_A TRNA selenocysteine ass 99.5 5.5E-14 1.9E-18 125.8 11.4 83 190-272 5-93 (104)
148 2cpj_A Non-POU domain-containi 99.5 3.3E-14 1.1E-18 126.4 9.8 80 190-270 11-90 (99)
149 2ad9_A Polypyrimidine tract-bi 99.5 2E-14 7E-19 133.4 8.7 79 278-357 30-110 (119)
150 2e5j_A Methenyltetrahydrofolat 99.5 2.5E-14 8.7E-19 126.8 9.0 79 277-355 17-95 (97)
151 1b7f_A Protein (SXL-lethal pro 99.5 2.6E-14 9E-19 137.3 9.8 77 190-266 85-168 (168)
152 2err_A Ataxin-2-binding protei 99.5 2.7E-14 9.2E-19 129.8 9.4 81 274-354 24-107 (109)
153 2dgt_A RNA-binding protein 30; 99.5 5E-14 1.7E-18 123.6 10.7 81 189-272 5-85 (92)
154 1why_A Hypothetical protein ri 99.5 5.1E-14 1.7E-18 124.7 10.9 79 191-270 14-94 (97)
155 3p5t_L Cleavage and polyadenyl 99.5 1.3E-14 4.3E-19 127.1 6.9 77 195-271 2-85 (90)
156 1wi8_A EIF-4B, eukaryotic tran 99.5 4E-14 1.4E-18 127.0 10.3 79 277-357 13-97 (104)
157 1fjc_A Nucleolin RBD2, protein 99.5 2.5E-14 8.4E-19 126.2 8.8 81 190-270 12-92 (96)
158 2kn4_A Immunoglobulin G-bindin 99.5 3.8E-14 1.3E-18 136.4 10.8 83 190-272 66-153 (158)
159 2cpi_A CCR4-NOT transcription 99.5 4.2E-14 1.4E-18 128.8 10.5 80 276-355 12-102 (111)
160 1fje_B Nucleolin RBD12, protei 99.5 1.4E-14 4.9E-19 140.6 7.8 155 101-269 18-174 (175)
161 1wi8_A EIF-4B, eukaryotic tran 99.5 5.5E-14 1.9E-18 126.1 10.9 81 190-272 11-97 (104)
162 2la6_A RNA-binding protein FUS 99.5 4.2E-14 1.4E-18 125.7 10.0 77 276-352 10-99 (99)
163 2cpj_A Non-POU domain-containi 99.5 3.4E-14 1.2E-18 126.3 9.4 79 277-356 13-91 (99)
164 1x4c_A Splicing factor, argini 99.5 5.4E-14 1.8E-18 127.4 10.9 77 278-356 14-95 (108)
165 1x4f_A Matrin 3; structural ge 99.5 2E-14 6.8E-19 132.1 8.0 81 190-271 21-104 (112)
166 2khc_A Testis-specific RNP-typ 99.5 3.8E-14 1.3E-18 129.9 10.0 77 276-352 37-118 (118)
167 2ytc_A PRE-mRNA-splicing facto 99.5 4.5E-14 1.5E-18 121.6 9.8 76 276-352 9-85 (85)
168 2kxn_B Transformer-2 protein h 99.5 4.4E-14 1.5E-18 132.6 10.5 79 277-355 44-127 (129)
169 2ywk_A Putative RNA-binding pr 99.5 4.1E-14 1.4E-18 124.4 9.7 79 189-267 11-93 (95)
170 2cpe_A RNA-binding protein EWS 99.5 3.9E-14 1.3E-18 128.8 9.6 82 276-357 12-106 (113)
171 3nmr_A Cugbp ELAV-like family 99.5 7.3E-14 2.5E-18 134.8 12.0 77 191-267 92-175 (175)
172 2fy1_A RNA-binding motif prote 99.5 3.7E-14 1.3E-18 130.4 9.4 79 278-356 6-88 (116)
173 4a8x_A RNA-binding protein wit 99.5 5.2E-14 1.8E-18 121.7 9.8 78 193-270 3-86 (88)
174 2fy1_A RNA-binding motif prote 99.5 6.5E-14 2.2E-18 128.8 11.0 81 191-271 4-88 (116)
175 2e5j_A Methenyltetrahydrofolat 99.5 3.8E-14 1.3E-18 125.7 9.0 80 191-270 16-95 (97)
176 2dhg_A TRNA selenocysteine ass 99.5 3.2E-14 1.1E-18 127.4 8.6 81 278-358 8-94 (104)
177 3ucg_A Polyadenylate-binding p 99.5 4.9E-14 1.7E-18 122.3 9.5 76 278-354 5-85 (89)
178 2a3j_A U1 small nuclear ribonu 99.5 6.3E-14 2.1E-18 131.5 10.8 80 191-270 26-111 (127)
179 2div_A TRNA selenocysteine ass 99.5 5E-14 1.7E-18 125.0 9.7 81 191-271 6-96 (99)
180 2fc9_A NCL protein; structure 99.5 5E-14 1.7E-18 125.5 9.7 82 190-271 11-93 (101)
181 2fc9_A NCL protein; structure 99.5 3.5E-14 1.2E-18 126.6 8.6 81 276-356 12-93 (101)
182 3n9u_C Cleavage and polyadenyl 99.5 4.2E-14 1.4E-18 137.2 9.9 79 278-356 54-139 (156)
183 1oo0_B CG8781-PA, drosophila Y 99.5 5.2E-14 1.8E-18 127.4 9.8 81 190-270 22-107 (110)
184 2nlw_A Eukaryotic translation 99.5 5.4E-14 1.8E-18 126.8 9.8 79 276-354 12-100 (105)
185 2dis_A Unnamed protein product 99.5 8E-14 2.7E-18 125.8 11.0 82 192-273 6-96 (109)
186 1p1t_A Cleavage stimulation fa 99.5 3.3E-14 1.1E-18 127.1 8.3 81 278-358 7-92 (104)
187 3ex7_B RNA-binding protein 8A; 99.5 4.1E-14 1.4E-18 131.2 9.3 81 277-357 20-105 (126)
188 1whx_A Hypothetical protein ri 99.5 4.1E-14 1.4E-18 129.2 9.1 76 278-354 9-84 (111)
189 2cqd_A RNA-binding region cont 99.5 6.4E-14 2.2E-18 128.2 10.4 81 275-356 13-98 (116)
190 2la4_A Nuclear and cytoplasmic 99.5 3.3E-14 1.1E-18 126.7 8.2 77 192-269 25-101 (101)
191 2do0_A HnRNP M, heterogeneous 99.5 8.7E-14 3E-18 126.6 11.1 80 277-356 13-96 (114)
192 2hvz_A Splicing factor, argini 99.5 2.2E-14 7.5E-19 127.9 6.9 76 280-355 1-76 (101)
193 1nu4_A U1A RNA binding domain; 99.5 4.5E-14 1.5E-18 124.7 8.8 80 278-357 7-92 (97)
194 2cqd_A RNA-binding region cont 99.5 1.1E-13 3.6E-18 126.7 11.6 83 189-272 12-99 (116)
195 2fc8_A NCL protein; structure 99.5 6.9E-14 2.4E-18 124.7 10.1 84 274-357 10-95 (102)
196 2cqh_A IGF-II mRNA-binding pro 99.5 2.7E-14 9.4E-19 125.3 7.3 78 278-357 7-86 (93)
197 2kxn_B Transformer-2 protein h 99.5 6.2E-14 2.1E-18 131.6 10.2 82 189-270 41-127 (129)
198 2do0_A HnRNP M, heterogeneous 99.5 1.7E-13 5.9E-18 124.6 12.8 80 190-269 11-94 (114)
199 3ns6_A Eukaryotic translation 99.5 2E-14 6.8E-19 128.6 6.4 77 193-269 5-93 (100)
200 1p1t_A Cleavage stimulation fa 99.5 2.8E-14 9.7E-19 127.6 7.3 79 192-270 6-89 (104)
201 2dgu_A Heterogeneous nuclear r 99.5 1.1E-13 3.9E-18 123.9 11.3 79 191-272 8-86 (103)
202 1u6f_A Tcubp1, RNA-binding pro 99.5 1.3E-13 4.5E-18 129.9 12.3 83 190-272 38-125 (139)
203 2dh8_A DAZ-associated protein 99.5 7.4E-14 2.5E-18 125.3 10.0 83 189-272 11-98 (105)
204 2dng_A Eukaryotic translation 99.5 8.8E-14 3E-18 124.5 10.5 79 277-357 13-96 (103)
205 2dng_A Eukaryotic translation 99.5 1.3E-13 4.3E-18 123.5 11.5 81 190-272 11-96 (103)
206 3zzy_A Polypyrimidine tract-bi 99.5 6E-14 2.1E-18 132.0 9.7 76 280-355 29-107 (130)
207 1h2v_Z 20 kDa nuclear CAP bind 99.5 8.4E-14 2.9E-18 134.1 11.0 82 277-358 37-123 (156)
208 3ex7_B RNA-binding protein 8A; 99.5 7.5E-14 2.6E-18 129.4 10.2 82 190-271 18-104 (126)
209 2la6_A RNA-binding protein FUS 99.5 1E-13 3.4E-18 123.3 10.6 77 190-266 9-98 (99)
210 3ulh_A THO complex subunit 4; 99.5 9.4E-14 3.2E-18 124.9 10.4 76 277-352 27-106 (107)
211 2kvi_A Nuclear polyadenylated 99.5 3.9E-14 1.3E-18 125.5 7.7 78 277-357 8-86 (96)
212 2div_A TRNA selenocysteine ass 99.5 4.5E-14 1.5E-18 125.3 8.1 79 277-355 7-95 (99)
213 2jvr_A Nucleolar protein 3; RN 99.5 4.6E-14 1.6E-18 129.4 8.4 78 191-268 25-104 (111)
214 2rs2_A Musashi-1, RNA-binding 99.5 7.3E-14 2.5E-18 127.0 9.7 82 275-357 21-107 (109)
215 2dgx_A KIAA0430 protein; RRM d 99.5 9.2E-14 3.2E-18 123.1 10.1 80 193-272 8-93 (96)
216 2dnp_A RNA-binding protein 14; 99.5 1.1E-13 3.9E-18 120.8 10.5 78 191-271 6-83 (90)
217 2err_A Ataxin-2-binding protei 99.5 5.1E-14 1.8E-18 127.9 8.5 81 189-269 24-107 (109)
218 1x4g_A Nucleolysin TIAR; struc 99.5 1.2E-13 4E-18 125.1 10.8 81 191-272 22-102 (109)
219 2cpe_A RNA-binding protein EWS 99.5 7.7E-14 2.6E-18 126.9 9.6 83 189-271 10-105 (113)
220 2khc_A Testis-specific RNP-typ 99.5 7.7E-14 2.6E-18 127.8 9.7 78 189-266 35-117 (118)
221 2cpx_A Hypothetical protein FL 99.5 8.1E-14 2.8E-18 127.0 9.8 83 190-272 21-108 (115)
222 1s79_A Lupus LA protein; RRM, 99.5 6.1E-14 2.1E-18 126.6 8.9 77 276-353 8-88 (103)
223 2cqp_A RNA-binding protein 12; 99.5 5.4E-14 1.8E-18 124.5 8.3 78 277-354 13-95 (98)
224 3s7r_A Heterogeneous nuclear r 99.5 9.7E-14 3.3E-18 120.2 9.7 75 276-351 8-87 (87)
225 1x4f_A Matrin 3; structural ge 99.5 3.5E-14 1.2E-18 130.4 7.2 79 277-356 23-104 (112)
226 2cpx_A Hypothetical protein FL 99.5 6.3E-14 2.1E-18 127.7 8.9 81 277-357 23-108 (115)
227 1x4c_A Splicing factor, argini 99.5 1.8E-13 6.1E-18 123.9 11.8 80 190-271 11-95 (108)
228 2j76_E EIF-4B, EIF4B, eukaryot 99.5 3.2E-14 1.1E-18 127.1 6.8 78 276-355 16-99 (100)
229 1x5p_A Negative elongation fac 99.5 1.7E-13 6E-18 121.4 11.5 78 277-357 13-90 (97)
230 3s7r_A Heterogeneous nuclear r 99.5 1.2E-13 4.1E-18 119.6 10.1 76 190-266 7-87 (87)
231 2nlw_A Eukaryotic translation 99.5 1.2E-13 4.2E-18 124.5 10.6 80 190-269 11-100 (105)
232 2cpd_A Apobec-1 stimulating pr 99.5 2.6E-13 8.9E-18 120.6 12.5 79 190-271 11-91 (99)
233 3ulh_A THO complex subunit 4; 99.5 1.4E-13 4.7E-18 123.9 10.8 78 190-267 25-106 (107)
234 2xnq_A Nuclear polyadenylated 99.5 1.5E-13 5E-18 122.4 10.8 77 190-269 18-95 (97)
235 1nu4_A U1A RNA binding domain; 99.5 5.5E-14 1.9E-18 124.1 8.0 80 191-270 5-90 (97)
236 3ucg_A Polyadenylate-binding p 99.5 9.8E-14 3.4E-18 120.4 9.4 76 193-269 5-85 (89)
237 1x4b_A Heterogeneous nuclear r 99.5 4.6E-14 1.6E-18 129.1 7.7 80 277-357 25-109 (116)
238 2fc8_A NCL protein; structure 99.5 1.2E-13 4E-18 123.3 10.0 83 190-272 11-95 (102)
239 2kt5_A RNA and export factor-b 99.5 2.1E-13 7E-18 126.3 12.1 79 277-355 33-115 (124)
240 2ek1_A RNA-binding protein 12; 99.5 3.6E-14 1.2E-18 124.8 6.5 76 278-353 14-94 (95)
241 2dh8_A DAZ-associated protein 99.5 6.6E-14 2.3E-18 125.7 8.3 81 276-357 13-98 (105)
242 2kvi_A Nuclear polyadenylated 99.5 7.2E-14 2.5E-18 123.7 8.4 79 191-272 7-86 (96)
243 2mss_A Protein (musashi1); RNA 99.5 4.3E-14 1.5E-18 118.9 6.7 70 281-351 1-75 (75)
244 2dis_A Unnamed protein product 99.5 9.3E-14 3.2E-18 125.4 9.3 80 278-357 7-95 (109)
245 2cqh_A IGF-II mRNA-binding pro 99.5 6.1E-14 2.1E-18 123.1 7.7 80 191-272 5-86 (93)
246 2jvo_A Nucleolar protein 3; nu 99.5 8.1E-14 2.8E-18 126.6 8.8 79 189-270 26-104 (108)
247 1x4e_A RNA binding motif, sing 99.5 2.4E-14 8.2E-19 123.5 4.9 76 278-353 4-84 (85)
248 1s79_A Lupus LA protein; RRM, 99.5 8.4E-14 2.9E-18 125.8 8.7 77 191-268 8-88 (103)
249 1wg1_A KIAA1579 protein, homol 99.5 6.9E-14 2.3E-18 121.9 7.8 75 278-354 4-78 (88)
250 2e44_A Insulin-like growth fac 99.5 2E-13 7E-18 120.3 10.9 78 278-355 14-93 (96)
251 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.3E-13 7.7E-18 131.1 12.1 81 191-271 36-121 (156)
252 2m2b_A RNA-binding protein 10; 99.5 6.7E-14 2.3E-18 131.2 8.2 82 189-271 18-110 (131)
253 2cpi_A CCR4-NOT transcription 99.5 8.7E-14 3E-18 126.7 8.7 81 190-270 11-102 (111)
254 2i2y_A Fusion protein consists 99.5 2.1E-13 7E-18 130.5 11.7 81 190-270 69-149 (150)
255 2j76_E EIF-4B, EIF4B, eukaryot 99.5 6.3E-14 2.2E-18 125.2 7.5 78 191-270 16-99 (100)
256 2m2b_A RNA-binding protein 10; 99.5 3.7E-14 1.3E-18 133.0 6.2 79 276-355 20-109 (131)
257 1x5p_A Negative elongation fac 99.5 3.5E-13 1.2E-17 119.4 12.1 79 190-271 11-89 (97)
258 2dgw_A Probable RNA-binding pr 99.5 1.5E-13 5.2E-18 120.0 9.3 77 277-355 8-88 (91)
259 3n9u_C Cleavage and polyadenyl 99.5 1E-13 3.6E-18 134.4 9.1 77 193-269 54-137 (156)
260 2cqp_A RNA-binding protein 12; 99.5 8E-14 2.7E-18 123.4 7.6 79 190-268 11-94 (98)
261 2krb_A Eukaryotic translation 99.5 1.1E-13 3.7E-18 118.6 8.2 70 194-263 1-80 (81)
262 2krb_A Eukaryotic translation 99.5 5.3E-14 1.8E-18 120.6 6.2 69 280-348 2-80 (81)
263 1x4e_A RNA binding motif, sing 99.5 6.5E-14 2.2E-18 120.7 6.8 76 192-267 3-83 (85)
264 2dgw_A Probable RNA-binding pr 99.5 2.6E-13 8.8E-18 118.6 10.6 79 190-270 6-88 (91)
265 2cqg_A TDP-43, TAR DNA-binding 99.5 4.5E-13 1.5E-17 119.8 12.3 81 190-272 11-96 (103)
266 1wg1_A KIAA1579 protein, homol 99.5 7.9E-14 2.7E-18 121.5 7.1 75 192-268 3-77 (88)
267 1x5o_A RNA binding motif, sing 99.5 3.7E-13 1.3E-17 122.6 11.9 80 190-269 21-112 (114)
268 1wf1_A RNA-binding protein RAL 99.4 2E-13 6.8E-18 123.8 9.8 77 191-270 24-101 (110)
269 2cqg_A TDP-43, TAR DNA-binding 99.4 3.6E-13 1.2E-17 120.4 11.3 80 276-357 12-96 (103)
270 2e5i_A Heterogeneous nuclear r 99.4 2E-13 7E-18 127.6 10.0 74 281-355 27-103 (124)
271 2ki2_A SS-DNA binding protein 99.4 3.7E-14 1.3E-18 123.6 4.7 76 280-356 2-82 (90)
272 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 3.2E-13 1.1E-17 126.9 11.4 76 276-351 60-140 (140)
273 1sjr_A Polypyrimidine tract-bi 99.4 1.5E-13 5.2E-18 134.1 9.5 77 279-355 46-125 (164)
274 2mss_A Protein (musashi1); RNA 99.4 9E-14 3.1E-18 117.0 6.8 70 196-266 1-75 (75)
275 1wg5_A Heterogeneous nuclear r 99.4 3.3E-13 1.1E-17 121.4 11.0 80 190-270 11-95 (104)
276 2ek1_A RNA-binding protein 12; 99.4 6E-14 2E-18 123.4 5.8 77 191-267 12-93 (95)
277 3pgw_A U1-A; protein-RNA compl 99.4 1.4E-13 4.8E-18 144.3 9.8 79 277-355 7-91 (282)
278 3d2w_A TAR DNA-binding protein 99.4 2.7E-13 9.3E-18 118.9 9.9 77 277-357 9-87 (89)
279 2rs2_A Musashi-1, RNA-binding 99.4 2E-13 6.8E-18 124.1 9.4 81 190-271 21-106 (109)
280 2lea_A Serine/arginine-rich sp 99.4 9.6E-14 3.3E-18 131.3 7.5 84 189-272 42-130 (135)
281 1fj7_A Nucleolin RBD1, protein 99.4 6.1E-14 2.1E-18 125.0 5.8 79 278-357 16-98 (101)
282 2kt5_A RNA and export factor-b 99.4 3.2E-13 1.1E-17 125.1 10.8 82 190-271 31-116 (124)
283 1x5o_A RNA binding motif, sing 99.4 3.2E-13 1.1E-17 123.0 10.6 78 277-354 23-112 (114)
284 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 4E-13 1.4E-17 126.2 11.5 77 190-266 59-140 (140)
285 2ki2_A SS-DNA binding protein 99.4 5.7E-14 1.9E-18 122.4 5.3 76 195-271 2-82 (90)
286 2cq2_A Hypothetical protein LO 99.4 2.1E-13 7.2E-18 125.5 9.3 78 190-268 21-105 (114)
287 2jwn_A Embryonic polyadenylate 99.4 2.2E-13 7.4E-18 126.0 9.5 77 278-355 35-116 (124)
288 1wg5_A Heterogeneous nuclear r 99.4 2.2E-13 7.5E-18 122.6 9.2 78 277-355 13-95 (104)
289 1uaw_A Mouse-musashi-1; RNP-ty 99.4 8.2E-14 2.8E-18 117.5 5.6 71 280-351 1-76 (77)
290 2cpy_A RNA-binding protein 12; 99.4 1.2E-13 4E-18 126.5 6.9 80 277-357 13-97 (114)
291 2e44_A Insulin-like growth fac 99.4 6.1E-13 2.1E-17 117.2 11.2 80 191-270 12-93 (96)
292 2adc_A Polypyrimidine tract-bi 99.4 6.4E-13 2.2E-17 135.8 12.9 159 101-269 39-228 (229)
293 2hgl_A HNRPF protein, heteroge 99.4 1.2E-13 4E-18 131.2 6.8 77 278-355 43-126 (136)
294 1uaw_A Mouse-musashi-1; RNP-ty 99.4 9.7E-14 3.3E-18 117.1 5.3 71 195-266 1-76 (77)
295 3beg_B Splicing factor, argini 99.4 2.8E-13 9.7E-18 124.3 8.8 75 278-354 15-94 (115)
296 2jwn_A Embryonic polyadenylate 99.4 4.7E-13 1.6E-17 123.7 10.3 77 193-270 35-116 (124)
297 3zzy_A Polypyrimidine tract-bi 99.4 3.4E-13 1.2E-17 126.9 9.4 77 194-270 28-107 (130)
298 2e5g_A U6 snRNA-specific termi 99.4 8.6E-13 2.9E-17 116.2 11.5 80 191-271 5-84 (94)
299 2cq4_A RNA binding motif prote 99.4 2.1E-13 7E-18 124.4 7.6 78 191-269 22-104 (114)
300 2e5g_A U6 snRNA-specific termi 99.4 4.2E-13 1.5E-17 118.2 9.3 78 278-356 7-84 (94)
301 1fj7_A Nucleolin RBD1, protein 99.4 1.1E-13 3.8E-18 123.3 5.4 80 191-271 14-97 (101)
302 1qm9_A Polypyrimidine tract-bi 99.4 7.9E-13 2.7E-17 131.2 12.2 78 192-269 118-197 (198)
303 1sjr_A Polypyrimidine tract-bi 99.4 9.6E-13 3.3E-17 128.4 12.2 79 193-271 45-126 (164)
304 1x4b_A Heterogeneous nuclear r 99.4 3.4E-13 1.2E-17 123.3 8.6 80 192-272 25-109 (116)
305 3egn_A RNA-binding protein 40; 99.4 4.8E-13 1.6E-17 127.0 9.7 80 278-357 44-133 (143)
306 3egn_A RNA-binding protein 40; 99.4 6E-13 2.1E-17 126.3 10.4 80 191-270 42-131 (143)
307 2cq2_A Hypothetical protein LO 99.4 4.1E-13 1.4E-17 123.6 8.8 76 278-354 24-106 (114)
308 1rk8_A CG8781-PA, CG8781-PA pr 99.4 6.3E-13 2.2E-17 129.5 10.6 83 189-271 67-154 (165)
309 2db1_A Heterogeneous nuclear r 99.4 2.3E-13 7.9E-18 125.5 7.1 77 277-354 15-98 (118)
310 2diu_A KIAA0430 protein; struc 99.4 6.2E-13 2.1E-17 117.7 9.4 72 280-356 10-86 (96)
311 3d2w_A TAR DNA-binding protein 99.4 4E-13 1.4E-17 117.8 8.1 76 191-270 8-85 (89)
312 2hgn_A Heterogeneous nuclear r 99.4 1E-13 3.5E-18 132.1 4.4 121 231-356 1-125 (139)
313 2dnn_A RNA-binding protein 12; 99.4 4.8E-13 1.7E-17 122.2 8.6 73 279-353 16-92 (109)
314 2diu_A KIAA0430 protein; struc 99.4 9.1E-13 3.1E-17 116.6 9.3 74 193-271 7-86 (96)
315 1wez_A HnRNP H', FTP-3, hetero 99.4 7.4E-13 2.5E-17 119.1 9.0 79 190-270 11-93 (102)
316 1wez_A HnRNP H', FTP-3, hetero 99.4 3.3E-13 1.1E-17 121.4 6.7 77 277-355 13-93 (102)
317 1iqt_A AUF1, heterogeneous nuc 99.4 1.9E-13 6.4E-18 114.9 4.6 70 281-351 1-75 (75)
318 3q2s_C Cleavage and polyadenyl 99.4 3E-13 1E-17 139.2 7.0 78 278-355 67-151 (229)
319 1wel_A RNA-binding protein 12; 99.4 1.8E-13 6E-18 127.0 4.7 77 278-355 24-105 (124)
320 2lmi_A GRSF-1, G-rich sequence 99.4 2.4E-13 8.2E-18 123.0 5.4 78 277-355 9-93 (107)
321 2cpy_A RNA-binding protein 12; 99.4 3.3E-13 1.1E-17 123.4 6.3 79 190-269 11-94 (114)
322 2lcw_A RNA-binding protein FUS 99.1 3.8E-14 1.3E-18 129.8 0.0 80 278-357 6-98 (116)
323 1wf0_A TDP-43, TAR DNA-binding 99.4 3.5E-13 1.2E-17 117.1 5.9 78 278-357 4-81 (88)
324 1wf0_A TDP-43, TAR DNA-binding 99.4 4.4E-13 1.5E-17 116.5 6.4 79 192-272 3-81 (88)
325 2hzc_A Splicing factor U2AF 65 99.4 1.3E-12 4.4E-17 112.7 9.2 71 278-350 5-86 (87)
326 2hzc_A Splicing factor U2AF 65 99.4 9E-13 3.1E-17 113.7 8.1 72 192-265 4-86 (87)
327 2e5i_A Heterogeneous nuclear r 99.4 1.5E-12 5.1E-17 121.7 10.1 74 196-270 27-103 (124)
328 2xs2_A Deleted in azoospermia- 99.4 3.3E-13 1.1E-17 120.4 5.4 79 191-271 6-88 (102)
329 1wel_A RNA-binding protein 12; 99.4 2E-13 6.8E-18 126.7 3.9 77 191-268 22-103 (124)
330 2bz2_A Negative elongation fac 99.4 1E-12 3.4E-17 122.0 8.6 78 277-357 37-114 (121)
331 1iqt_A AUF1, heterogeneous nuc 99.4 3.6E-13 1.2E-17 113.1 4.9 70 196-266 1-75 (75)
332 2db1_A Heterogeneous nuclear r 99.4 6.6E-13 2.3E-17 122.4 7.1 77 191-268 14-97 (118)
333 2hgl_A HNRPF protein, heteroge 99.4 6.1E-13 2.1E-17 126.3 6.9 76 191-267 41-123 (136)
334 3q2s_C Cleavage and polyadenyl 99.4 6.9E-13 2.4E-17 136.5 7.8 75 193-267 67-148 (229)
335 2lcw_A RNA-binding protein FUS 99.0 6.6E-14 2.2E-18 128.2 0.0 82 191-272 4-98 (116)
336 2voo_A Lupus LA protein; RNA-b 99.4 2.3E-12 7.9E-17 129.1 11.2 115 240-355 63-188 (193)
337 2xs2_A Deleted in azoospermia- 99.4 4.8E-13 1.6E-17 119.3 5.4 78 277-356 7-88 (102)
338 3beg_B Splicing factor, argini 99.3 1.6E-12 5.4E-17 119.3 8.5 76 192-269 14-94 (115)
339 2f3j_A RNA and export factor b 99.3 2.5E-12 8.5E-17 127.2 10.1 78 278-355 87-168 (177)
340 2lmi_A GRSF-1, G-rich sequence 99.3 7.1E-13 2.4E-17 119.9 5.4 77 191-268 8-91 (107)
341 2f3j_A RNA and export factor b 99.3 2.7E-12 9.2E-17 127.0 9.7 80 190-269 84-167 (177)
342 2dha_A FLJ20171 protein; RRM d 99.3 6.1E-13 2.1E-17 124.1 4.6 76 278-354 22-105 (123)
343 2dnn_A RNA-binding protein 12; 99.3 2.4E-12 8.2E-17 117.5 8.0 74 192-267 14-91 (109)
344 2bz2_A Negative elongation fac 99.3 3E-12 1E-16 118.8 8.7 78 191-271 36-113 (121)
345 3u1l_A PRE-mRNA-splicing facto 99.3 3.2E-12 1.1E-16 132.2 9.5 79 277-356 132-231 (240)
346 2hgm_A HNRPF protein, heteroge 99.3 1.5E-12 5.3E-17 121.9 6.0 75 278-354 41-121 (126)
347 2hgn_A Heterogeneous nuclear r 99.3 1.3E-12 4.3E-17 124.5 5.2 79 190-270 42-124 (139)
348 2hgm_A HNRPF protein, heteroge 99.3 3.3E-12 1.1E-16 119.7 7.5 77 190-268 38-120 (126)
349 3u1l_A PRE-mRNA-splicing facto 99.3 3.9E-12 1.3E-16 131.6 8.7 81 191-272 131-232 (240)
350 2dha_A FLJ20171 protein; RRM d 99.3 1.8E-12 6.1E-17 121.0 5.5 75 192-267 21-103 (123)
351 2dnl_A Cytoplasmic polyadenyla 99.3 6.8E-12 2.3E-16 114.7 9.2 73 191-266 5-85 (114)
352 2pe8_A Splicing factor 45; RRM 99.3 1.4E-11 4.8E-16 111.6 10.5 76 278-353 7-93 (105)
353 2dit_A HIV TAT specific factor 99.3 1.7E-11 5.9E-16 111.7 11.0 80 277-356 13-104 (112)
354 2dnl_A Cytoplasmic polyadenyla 99.3 8.5E-12 2.9E-16 114.0 8.8 77 278-357 7-91 (114)
355 2j8a_A Histone-lysine N-methyl 99.3 7.7E-12 2.6E-16 116.8 8.5 77 280-356 3-98 (136)
356 2dit_A HIV TAT specific factor 99.2 2.9E-11 9.8E-16 110.2 11.2 83 189-271 10-104 (112)
357 3pgw_S U1-70K; protein-RNA com 99.2 1.6E-11 5.5E-16 137.8 10.6 80 191-270 99-183 (437)
358 2pe8_A Splicing factor 45; RRM 99.2 3.3E-11 1.1E-15 109.2 10.1 78 191-268 5-93 (105)
359 2d9o_A DNAJ (HSP40) homolog, s 99.2 8E-11 2.8E-15 105.8 9.9 67 288-356 26-92 (100)
360 2voo_A Lupus LA protein; RNA-b 99.2 5.3E-11 1.8E-15 119.2 9.5 75 193-268 108-186 (193)
361 2j8a_A Histone-lysine N-methyl 99.1 2.8E-11 9.5E-16 113.0 5.7 73 195-267 3-94 (136)
362 3v4m_A Splicing factor U2AF 65 99.1 1.2E-10 4E-15 105.5 9.5 76 278-353 4-96 (105)
363 2d9o_A DNAJ (HSP40) homolog, s 99.1 4E-10 1.4E-14 101.3 12.2 75 194-270 10-91 (100)
364 3v4m_A Splicing factor U2AF 65 99.1 2.4E-10 8.1E-15 103.5 8.5 76 192-267 3-95 (105)
365 1jmt_A Splicing factor U2AF 35 99.1 7.8E-11 2.7E-15 106.4 5.2 68 284-351 20-103 (104)
366 3tht_A Alkylated DNA repair pr 99.1 2.5E-10 8.5E-15 124.0 9.2 77 190-267 14-97 (345)
367 3tht_A Alkylated DNA repair pr 99.0 3.2E-10 1.1E-14 123.1 9.6 75 277-352 16-97 (345)
368 1jmt_A Splicing factor U2AF 35 99.0 1.4E-10 4.7E-15 104.8 4.2 68 199-266 20-103 (104)
369 3ue2_A Poly(U)-binding-splicin 99.0 6.7E-10 2.3E-14 102.8 8.5 76 278-353 19-108 (118)
370 3s6e_A RNA-binding protein 39; 99.0 1.3E-09 4.6E-14 100.2 9.8 76 278-353 6-92 (114)
371 3ue2_A Poly(U)-binding-splicin 98.9 2.4E-09 8.1E-14 99.1 8.6 75 193-267 19-107 (118)
372 3s6e_A RNA-binding protein 39; 98.9 5.5E-09 1.9E-13 96.0 8.8 76 192-267 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 98.8 2.2E-08 7.6E-13 87.8 9.4 73 278-354 6-86 (91)
374 1owx_A Lupus LA protein, SS-B, 98.7 7.6E-08 2.6E-12 89.2 11.1 87 278-366 17-107 (121)
375 1ufw_A Synaptojanin 2; RNP dom 98.5 1.3E-07 4.3E-12 83.5 6.9 73 277-353 13-94 (95)
376 1owx_A Lupus LA protein, SS-B, 98.5 3.2E-07 1.1E-11 85.0 9.9 75 191-266 15-93 (121)
377 3dxb_A Thioredoxin N-terminall 98.3 5.2E-07 1.8E-11 91.4 7.3 62 291-352 141-211 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.3 1.1E-06 3.6E-11 77.2 8.0 73 192-268 5-85 (91)
379 3dxb_A Thioredoxin N-terminall 98.2 2.4E-06 8.1E-11 86.5 8.3 62 206-267 141-211 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.1 6.9E-06 2.4E-10 74.0 8.5 72 278-350 20-96 (117)
381 1ufw_A Synaptojanin 2; RNP dom 98.0 7.3E-06 2.5E-10 72.3 6.3 72 191-266 12-92 (95)
382 2l9w_A U4/U6 snRNA-associated- 97.6 0.00012 4.1E-09 66.0 7.2 72 192-264 19-95 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.6 0.00061 2.1E-08 60.8 11.4 89 192-292 6-99 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.4 0.00036 1.2E-08 62.3 7.8 83 279-365 8-95 (104)
385 1wey_A Calcipressin 1; structu 96.8 0.002 7E-08 57.7 6.2 74 280-354 6-84 (104)
386 1wey_A Calcipressin 1; structu 96.5 0.0028 9.6E-08 56.8 5.3 75 194-269 5-84 (104)
387 1uw4_A UPF3X; nonsense mediate 95.9 0.027 9.2E-07 49.4 8.6 74 195-268 2-87 (91)
388 1wwh_A Nucleoporin 35, nucleop 95.9 0.03 1E-06 51.4 9.2 74 276-352 21-95 (119)
389 1uw4_A UPF3X; nonsense mediate 94.7 0.11 3.6E-06 45.6 8.2 63 280-342 2-71 (91)
390 1whv_A Poly(A)-specific ribonu 94.6 0.071 2.4E-06 47.1 6.9 54 280-337 17-70 (100)
391 1whv_A Poly(A)-specific ribonu 94.5 0.071 2.4E-06 47.1 6.6 56 193-252 15-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 94.4 0.099 3.4E-06 47.9 7.7 72 192-266 22-94 (119)
393 3pq1_A Poly(A) RNA polymerase; 93.8 0.027 9.2E-07 63.2 3.1 57 192-249 51-107 (464)
394 3ctr_A Poly(A)-specific ribonu 93.4 0.056 1.9E-06 47.9 3.8 54 195-252 7-60 (101)
395 3ctr_A Poly(A)-specific ribonu 93.3 0.068 2.3E-06 47.4 4.2 53 281-337 8-60 (101)
396 2l08_A Regulator of nonsense t 92.5 0.2 6.7E-06 44.3 5.9 75 193-267 8-94 (97)
397 3p3d_A Nucleoporin 53; structu 92.3 0.14 4.6E-06 47.8 4.9 72 279-352 7-97 (132)
398 3pq1_A Poly(A) RNA polymerase; 91.3 0.09 3.1E-06 59.0 3.0 56 279-335 53-108 (464)
399 2l08_A Regulator of nonsense t 89.8 0.7 2.4E-05 40.8 6.7 63 280-342 10-79 (97)
400 3p3d_A Nucleoporin 53; structu 88.6 0.41 1.4E-05 44.5 4.6 71 194-266 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 76.1 5.2 0.00018 45.3 8.1 56 194-253 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 64.5 13 0.00044 42.0 8.0 54 280-337 441-494 (507)
403 2qih_A Protein USPA1; trimeric 50.4 3.5 0.00012 38.2 0.1 17 572-588 1-17 (157)
404 2ls0_1 Zoocin A endopeptidase; 42.1 10 0.00035 34.4 1.8 15 572-586 1-15 (128)
405 3v2a_A Vascular endothelial gr 32.9 9.2 0.00031 35.6 0.0 16 573-588 3-18 (134)
406 3osx_A 60 kDa chaperonin; alph 28.7 13 0.00046 36.7 0.4 21 572-594 1-21 (201)
407 2ft0_A TDP-fucosamine acetyltr 25.6 8.1 0.00028 38.1 -1.9 20 574-593 3-26 (235)
408 2fq3_A Transcription regulator 25.1 17 0.00057 32.4 0.3 18 572-589 1-18 (104)
409 2a50_A ASFP595, GFP-like non-f 24.9 16 0.00055 30.4 0.1 14 572-585 1-14 (73)
410 2xiw_A DNA-binding protein 7D; 24.9 15 0.00053 29.7 0.0 13 573-585 2-14 (79)
411 1x93_A Hypothetical protein HP 24.7 16 0.00053 28.0 0.0 12 572-583 44-55 (55)
412 1v1p_B Exotoxin 1; virulence f 24.1 16 0.00056 36.6 0.0 18 572-589 1-18 (213)
413 2k1o_A Putative; repressor, tr 23.3 17 0.00059 28.7 0.0 14 572-585 1-14 (66)
414 2dvz_A BUGE, putative exported 21.5 20 0.00067 37.8 0.0 14 572-585 1-14 (314)
415 2lnk_A Protein S100-A4; EF-han 21.3 23 0.00079 31.6 0.4 16 573-588 2-17 (113)
416 2j2j_A Fiber protein; CAR, KNO 21.0 21 0.00071 35.3 0.1 17 572-588 1-17 (197)
417 4eyt_A Telomerase associated p 20.6 4E+02 0.014 22.9 7.9 59 192-253 10-68 (129)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=2e-30 Score=263.30 Aligned_cols=166 Identities=19% Similarity=0.351 Sum_probs=146.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
..+.++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+++..+.|+.|.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 346789999999999999999999999999999874 578899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe---cCCCCceEEEEECCHHHHHHHHHHhCCCeeC
Q 004350 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (759)
Q Consensus 266 a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i---~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~ 342 (759)
+..... .......+|||+|||+++|+++|+++|++||.|+.|++ .+.++|||||+|.+.++|.+||+.|||..|+
T Consensus 92 ~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPS--LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTH--HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cccccc--ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 865432 12224568999999999999999999999999999986 3446899999999999999999999999999
Q ss_pred CcEEEEEecCCCchhh
Q 004350 343 GKRIKLEPSRPGGARR 358 (759)
Q Consensus 343 G~~L~V~~a~~k~~r~ 358 (759)
|++|+|.+++++.++.
T Consensus 170 g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 170 DRKVFVGRFKSRKERE 185 (213)
T ss_dssp TEECEEEECCCHHHHH
T ss_pred CEEEEEEEcCCCcccc
Confidence 9999999999876544
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.2e-29 Score=240.00 Aligned_cols=157 Identities=20% Similarity=0.361 Sum_probs=142.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~ 270 (759)
|+|||+|||.++|+++|+++|++||.|..|.+ .++++|||||+|.+.++|++|++.|++..+.|++|.|.|+.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999884 35689999999999999999999999999999999999987654
Q ss_pred CCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcE
Q 004350 271 NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR 345 (759)
Q Consensus 271 ~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~ 345 (759)
.. ......+|||+|||..+|+++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..++|++
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 32 3335678999999999999999999999999999976 3566899999999999999999999999999999
Q ss_pred EEEEecCC
Q 004350 346 IKLEPSRP 353 (759)
Q Consensus 346 L~V~~a~~ 353 (759)
|+|.||++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999874
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.7e-28 Score=258.44 Aligned_cols=235 Identities=17% Similarity=0.239 Sum_probs=185.6
Q ss_pred ccCCCccChhHHHhccccccccccCCCCcccccc-cccccCCcEEEEecCcchhhccceeeeeccCcccCcccccccCCC
Q 004350 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNG 179 (759)
Q Consensus 101 i~NlLp~d~d~~~~~vade~~v~kl~~~~~dlee-dlF~s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~~~~~~~l~n~ 179 (759)
++||.+..+++.+..++..+|+ .+ .+-...|-+.|+|...+.+..++..++-.... ...+
T Consensus 27 V~nLp~~~te~~l~~~F~~~Gi----------~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~i-------- 87 (284)
T 3smz_A 27 IRGLPGDVTNQEVHDLLSDYEL----------KYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLR-EREL-------- 87 (284)
T ss_dssp EECCCTTCCHHHHHHHTTTSCE----------EEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET-TEEC--------
T ss_pred EeCCCCCCCHHHHHHHHHHcCC----------EEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeC-CeEE--------
Confidence 8899887767766666555542 33 33344555778888777777766544311100 0000
Q ss_pred CCCccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHcccc
Q 004350 180 VGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNK 254 (759)
Q Consensus 180 v~~~~g~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~ 254 (759)
.+. -....++|||+|||+++++++|+++|++||.|..+.+ +++++|||||+|.+.++|.+|+..|++.
T Consensus 88 --~v~-----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 88 --SVQ-----LQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp --EEE-----ECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred --EEE-----ecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 000 1234689999999999999999999999999998873 5678999999999999999999999999
Q ss_pred ccCCceeeEeecCCCCCCCCCccCccceEEeccCCCC-cHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHH
Q 004350 255 PLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASV-SNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAA 329 (759)
Q Consensus 255 ~l~gr~L~V~~a~~k~~~~~~~~~~~tLfV~NLp~~~-TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A 329 (759)
.+.|++|.|.|+.++.... ......+|||+|||+++ |+++|+++|++||.|..|++ ++.++|||||+|.+.++|
T Consensus 161 ~~~g~~i~v~~a~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 239 (284)
T 3smz_A 161 PLGPRTLYVHWTDAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMA 239 (284)
T ss_dssp EETTEECEEEECCGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHH
T ss_pred EeCCcEEEEEECCCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHH
Confidence 9999999999997765432 33456789999999995 99999999999999999876 345689999999999999
Q ss_pred HHHHHHhCCCeeCCcEEEEEecCCCchhhhhhh
Q 004350 330 EAALRALNRSDINGKRIKLEPSRPGGARRNLMQ 362 (759)
Q Consensus 330 ~~Al~~Lng~~i~G~~L~V~~a~~k~~r~~~~~ 362 (759)
.+|++.|||..|+|++|+|.++.++..++..+.
T Consensus 240 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~ 272 (284)
T 3smz_A 240 EEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLA 272 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEECCSSSCHHHHHH
T ss_pred HHHHHHhCCCccCCeEEEEEEecCCCcccchhh
Confidence 999999999999999999999999887665433
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=2.6e-28 Score=234.73 Aligned_cols=155 Identities=25% Similarity=0.435 Sum_probs=140.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
++++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 3689999999999999999999999999999874 56788999999999999999999999999999999999997
Q ss_pred CCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeC
Q 004350 268 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (759)
Q Consensus 268 ~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~ 342 (759)
++.. .....+|||+|||..+|+++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..++
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 5432 334578999999999999999999999999999986 3456899999999999999999999999999
Q ss_pred CcE--EEEEec
Q 004350 343 GKR--IKLEPS 351 (759)
Q Consensus 343 G~~--L~V~~a 351 (759)
|+. |+|+||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 965 888875
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=2.5e-28 Score=235.73 Aligned_cols=155 Identities=23% Similarity=0.432 Sum_probs=141.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999983 46688999999999999999999999999999999999997
Q ss_pred CCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeC
Q 004350 268 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (759)
Q Consensus 268 ~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~ 342 (759)
++.. .....+|||+|||..+|+++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..++
T Consensus 82 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 6543 234678999999999999999999999999999976 3456799999999999999999999999998
Q ss_pred C--cEEEEEec
Q 004350 343 G--KRIKLEPS 351 (759)
Q Consensus 343 G--~~L~V~~a 351 (759)
| ++|+|++|
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999986
No 6
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.1e-28 Score=259.99 Aligned_cols=201 Identities=17% Similarity=0.274 Sum_probs=174.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~ 271 (759)
.++++|||+|||+++|+++|+++|++|| |..|.+ ++++|||||+|.+.++|++|+..|++..+.|++|.|.|+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 3578999999999999999999999999 999887 6899999999999999999999999999999999999964
Q ss_pred CCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 004350 272 PSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (759)
Q Consensus 272 ~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L 346 (759)
...+|||+|||+++|+++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|+|..++|+.|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2468999999999999999999999999999975 45568999999999999999999999999999999
Q ss_pred EEEecCCCch-------hhhhhhhhhHHH-HHHHHhhhccccCCCCCCCCCCCcccCCCccccccccc-CCCCCCCcccC
Q 004350 347 KLEPSRPGGA-------RRNLMQQLNQEL-EQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA-FSKSPGLGTLS 417 (759)
Q Consensus 347 ~V~~a~~k~~-------r~~~~~q~~~~~-~q~~~~~~~~~~Gsp~~ns~p~~f~~~Gsp~~~~~m~~-~~rS~~~G~v~ 417 (759)
+|.++.++.. +..++.++...+ ++++++.+| ..||.+....++.+ .++++++|||.
T Consensus 168 ~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f---------------~~~G~i~~v~i~~~~~g~~~g~afV~ 232 (284)
T 3smz_A 168 YVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRAL---------------SAVHSPTFCQLACGQDGQLKGFAVLE 232 (284)
T ss_dssp EEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHT---------------CSSSCCSEEEEEECSSCCEEEEEEEE
T ss_pred EEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHh---------------hCCCCeEEEEEEECCCCCcccEEEEE
Confidence 9999987543 234667777774 677777664 45666666666665 67888999997
Q ss_pred CC
Q 004350 418 PI 419 (759)
Q Consensus 418 ~~ 419 (759)
..
T Consensus 233 f~ 234 (284)
T 3smz_A 233 YE 234 (284)
T ss_dssp CS
T ss_pred eC
Confidence 54
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=2.9e-28 Score=241.47 Aligned_cols=168 Identities=20% Similarity=0.365 Sum_probs=140.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
......++|||+|||+++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+.. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 34567899999999999999999999999999999874 467899999999999999999985 889999999999
Q ss_pred eecCCCCCCCC--CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHh
Q 004350 264 HFSIPKDNPSE--KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRAL 336 (759)
Q Consensus 264 ~~a~~k~~~~~--~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~L 336 (759)
.++.++..... ......+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~- 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ- 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-
Confidence 99876543322 2334579999999999999999999999999999976 356789999999999999999986
Q ss_pred CCCeeCCcEEEEEecCCCchhh
Q 004350 337 NRSDINGKRIKLEPSRPGGARR 358 (759)
Q Consensus 337 ng~~i~G~~L~V~~a~~k~~r~ 358 (759)
++..|+|+.|+|.++.++....
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp SCCEETTEECEEEECC------
T ss_pred CCcEECCEEEEEEecCChhHhc
Confidence 7999999999999999886654
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=2.7e-28 Score=245.38 Aligned_cols=164 Identities=20% Similarity=0.378 Sum_probs=144.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
+.++|||+|||+++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4689999999999999999999999999999985 56789999999999999999999999999999999999876
Q ss_pred CCCCCC-------CCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHH
Q 004350 268 PKDNPS-------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRA 335 (759)
Q Consensus 268 ~k~~~~-------~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~ 335 (759)
...... .......+|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 543211 11234579999999999999999999999999999986 345689999999999999999999
Q ss_pred hCCCeeCCcEEEEEecCCCch
Q 004350 336 LNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 336 Lng~~i~G~~L~V~~a~~k~~ 356 (759)
|||..|+|+.|+|.++++...
T Consensus 187 l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCSS
T ss_pred ccCCEeCCcEEEEEEecCCCC
Confidence 999999999999999987643
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=8.6e-29 Score=241.52 Aligned_cols=162 Identities=19% Similarity=0.279 Sum_probs=144.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE----EeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTL----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v----~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
...+.++|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++ |++..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 45678999999999999999999999999864331 1357899999999999999999995 999999999999999
Q ss_pred cCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcE
Q 004350 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR 345 (759)
Q Consensus 266 a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~ 345 (759)
+.++... ......+|||+|||.++|+++|+++|++||.|..+..++.++|||||+|.+.++|.+|++.|||..|+|++
T Consensus 88 ~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 9765432 33356799999999999999999999999999988556788999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004350 346 IKLEPSRPG 354 (759)
Q Consensus 346 L~V~~a~~k 354 (759)
|+|.+++++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999876
No 10
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1.1e-27 Score=245.86 Aligned_cols=164 Identities=24% Similarity=0.332 Sum_probs=146.8
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 191 EHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 191 ~~~~rtLfVgNLP~-~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
..+.++|||+|||+ ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|++..+.|++|.|.|+.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 45679999999999 99999999999999999999976556899999999999999999999999999999999998754
Q ss_pred CCCCCC-------------------------------ccCccceEEeccCCCCcHHHHHHHhhccC-CeEEEEecCCCCc
Q 004350 270 DNPSEK-------------------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRETPHKRH 317 (759)
Q Consensus 270 ~~~~~~-------------------------------~~~~~tLfV~NLp~~~TeedLr~~Fs~fG-~I~~v~i~~~s~G 317 (759)
.....+ .....+|||+|||..+|+++|+++|++|| .|..|++..+.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 211000 11246899999999999999999999999 9999999777889
Q ss_pred eEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEecCCC
Q 004350 318 HKFIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSRPG 354 (759)
Q Consensus 318 fgFVeF~~~e~A~~Al~~Lng~~i~-G~~L~V~~a~~k 354 (759)
||||+|.+.++|.+|++.|+|..++ |++|+|.|+++.
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999999874
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1.1e-27 Score=252.06 Aligned_cols=164 Identities=23% Similarity=0.433 Sum_probs=146.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEe--CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 190 GEHPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr----~lFs~fG~I~~v~~--~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
+..++++|||+|||+++|+++|+ ++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45678999999999999999977 89999999999985 6789999999999999999999999999999999999
Q ss_pred eecCCCCCCC----------------------------------------------------------------------
Q 004350 264 HFSIPKDNPS---------------------------------------------------------------------- 273 (759)
Q Consensus 264 ~~a~~k~~~~---------------------------------------------------------------------- 273 (759)
+|+..+....
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9986543200
Q ss_pred -------------------------------------CCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCC
Q 004350 274 -------------------------------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 316 (759)
Q Consensus 274 -------------------------------------~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~ 316 (759)
......++|||+|||..+|+++|+++|++||.|++|++...++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 0111346799999999999999999999999999999877677
Q ss_pred ceEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEecCC
Q 004350 317 HHKFIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSRP 353 (759)
Q Consensus 317 GfgFVeF~~~e~A~~Al~~Lng~~i~-G~~L~V~~a~~ 353 (759)
|||||+|.+.++|.+|++.|||..|+ |+.|+|.|++.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99999999999999999999999999 99999999863
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=5.7e-28 Score=234.41 Aligned_cols=154 Identities=17% Similarity=0.341 Sum_probs=139.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCce
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 260 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~f----G-------~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~ 260 (759)
++.++|||+|||+++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|++|+ .|++..+.|++
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 357899999999999999999999999 7 7888765 478999999999999999999 79999999999
Q ss_pred eeEeecCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHH
Q 004350 261 LDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRA 335 (759)
Q Consensus 261 L~V~~a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~ 335 (759)
|.|.++...... ....+|||+|||..+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.
T Consensus 80 i~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 80 LKIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp CEEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred eeecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 999997654322 23678999999999999999999999999999986 455689999999999999999999
Q ss_pred hCCCeeCCcEEEEEec
Q 004350 336 LNRSDINGKRIKLEPS 351 (759)
Q Consensus 336 Lng~~i~G~~L~V~~a 351 (759)
|||..|+|++|+|++|
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999999999999987
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=3.9e-28 Score=256.68 Aligned_cols=226 Identities=16% Similarity=0.222 Sum_probs=170.0
Q ss_pred ccCCCccChhHHHhccccccccccCCCCcccccc-cccc----cCCcEEEEecCcchhhccceeeeeccCcccCcccccc
Q 004350 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFD----SGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYP 175 (759)
Q Consensus 101 i~NlLp~d~d~~~~~vade~~v~kl~~~~~dlee-dlF~----s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~~~~~~~ 175 (759)
++||.+..+++.+..++..+| .+.+ .+.. ..|-+.|+|...+.+..++. ++ ....
T Consensus 46 V~nLp~~~t~~~l~~~F~~~G---------~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~--~~~~-------- 105 (292)
T 2ghp_A 46 VKNLPKSYNQNKVYKYFKHCG---------PIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KT--HKVV-------- 105 (292)
T ss_dssp EEEECTTCCHHHHHHHHGGGS---------CEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TT--TCEE--------
T ss_pred EeCCCCCCCHHHHHHHHHhcC---------CeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hC--CcEe--------
Confidence 889888776666666544443 3333 2221 23345666666665555542 21 0000
Q ss_pred cCCCCCCccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEe----CCCcceEEEEEecCHHHHHHHHHH
Q 004350 176 ISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYT----ACKHRGFVMISYYDIRAARTAMRA 250 (759)
Q Consensus 176 l~n~v~~~~g~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG-~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~ 250 (759)
.+. . ........++|||+|||+++++++|+++|++|| .|..|.+ .++++|||||+|.+.++|.+|+..
T Consensus 106 --~g~-~----i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~ 178 (292)
T 2ghp_A 106 --GQN-E----IIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 178 (292)
T ss_dssp --TTE-E----CEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHH
T ss_pred --CCc-E----EEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 000 0 000112578999999999999999999999999 9999884 246899999999999999999999
Q ss_pred ccccccCCceeeEeecCCCCCCCC---CccCccceEEeccCCC-CcHHHHHHHhhccCCeEEEEec------CCCCceEE
Q 004350 251 LQNKPLRRRKLDIHFSIPKDNPSE---KDVNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRET------PHKRHHKF 320 (759)
Q Consensus 251 L~g~~l~gr~L~V~~a~~k~~~~~---~~~~~~tLfV~NLp~~-~TeedLr~~Fs~fG~I~~v~i~------~~s~GfgF 320 (759)
|++..+.|++|.|.|+.++..... ......+|||+|||.. +|+++|+++|++||.|..|++. +.++||||
T Consensus 179 l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~af 258 (292)
T 2ghp_A 179 LNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAF 258 (292)
T ss_dssp HTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEE
T ss_pred hCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEE
Confidence 999999999999999987654332 2335679999999999 9999999999999999999873 66789999
Q ss_pred EEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 321 IEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 321 VeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
|+|.+.++|.+|+ .|||..|+|++|+|.+++++
T Consensus 259 V~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 259 MVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999999999 99999999999999999886
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1.1e-27 Score=242.86 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=137.2
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 004350 193 PSRTLFVRNIN-SNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (759)
Q Consensus 193 ~~rtLfVgNLP-~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~ 271 (759)
+.++|||+||| +++|+++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|+|..+.|++|.|.|+..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 46899999999 89999999999999999999998766799999999999999999999999999999999999864321
Q ss_pred CCC------------C---------------------ccCccceEEeccCCCCcHHHHHHHhhccCCe--EEEEecC---
Q 004350 272 PSE------------K---------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYGEV--KEIRETP--- 313 (759)
Q Consensus 272 ~~~------------~---------------------~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I--~~v~i~~--- 313 (759)
... + .....+|||+|||+++|+++|+++|++||.| .+|++..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 000 0 0123579999999999999999999999999 8888643
Q ss_pred CCCceEEEEECCHHHHHHHHHHhCCCeeCCc----EEEEEec
Q 004350 314 HKRHHKFIEFYDVRAAEAALRALNRSDINGK----RIKLEPS 351 (759)
Q Consensus 314 ~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~----~L~V~~a 351 (759)
.++|||||+|.+.++|.+||..|||..|.|+ .+.|+++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3469999999999999999999999999986 4666654
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=3.1e-28 Score=235.14 Aligned_cols=155 Identities=19% Similarity=0.410 Sum_probs=139.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
++++|||+|||+++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|+.. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5789999999999999999999999999999984 467899999999999999999994 568999999999986
Q ss_pred CCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeC
Q 004350 268 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (759)
Q Consensus 268 ~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~ 342 (759)
++. .....++|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++ ++|..++
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 532 2234568999999999999999999999999999986 35678999999999999999998 8999999
Q ss_pred CcEEEEEecCCC
Q 004350 343 GKRIKLEPSRPG 354 (759)
Q Consensus 343 G~~L~V~~a~~k 354 (759)
|++|+|.++.|+
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999886
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=8.5e-28 Score=239.65 Aligned_cols=162 Identities=25% Similarity=0.339 Sum_probs=145.3
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 004350 193 PSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (759)
Q Consensus 193 ~~rtLfVgNLP~-~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~ 271 (759)
++++|||+|||+ ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|++..+.|++|.|.|+.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999987655689999999999999999999999999999999999875421
Q ss_pred CCCC-------------------------------ccCccceEEeccCCCCcHHHHHHHhhccC-CeEEEEecCCCCceE
Q 004350 272 PSEK-------------------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRETPHKRHHK 319 (759)
Q Consensus 272 ~~~~-------------------------------~~~~~tLfV~NLp~~~TeedLr~~Fs~fG-~I~~v~i~~~s~Gfg 319 (759)
...+ .....+|||+|||..+|+++|+++|++|| .|..|++....+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 1100 11256899999999999999999999999 999999977779999
Q ss_pred EEEECCHHHHHHHHHHhCCCeeC-CcEEEEEecCCC
Q 004350 320 FIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSRPG 354 (759)
Q Consensus 320 FVeF~~~e~A~~Al~~Lng~~i~-G~~L~V~~a~~k 354 (759)
||+|.+.++|.+|++.|||..++ |++|+|.|+++.
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999874
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=2.7e-27 Score=229.70 Aligned_cols=157 Identities=21% Similarity=0.406 Sum_probs=137.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CC--CcceEEEEEecCHHHHHHHHHHccccccC---Cceee
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----AC--KHRGFVMISYYDIRAARTAMRALQNKPLR---RRKLD 262 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~g--ksrGfAFVeF~~~e~A~kAi~~L~g~~l~---gr~L~ 262 (759)
+.++|||+|||+++|+++|+++|++||.|..|++ ++ +++|||||+|.+.++|++|++.|++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999874 22 78999999999999999999999998775 67888
Q ss_pred EeecCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCC
Q 004350 263 IHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNR 338 (759)
Q Consensus 263 V~~a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng 338 (759)
+.++.++.. .....++|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 888765433 2335678999999999999999999999999999986 345689999999999999999999999
Q ss_pred CeeC---CcEEEEEecC
Q 004350 339 SDIN---GKRIKLEPSR 352 (759)
Q Consensus 339 ~~i~---G~~L~V~~a~ 352 (759)
..+. |++|+|+||.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8776 4999999973
No 18
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=1.5e-27 Score=236.66 Aligned_cols=162 Identities=17% Similarity=0.324 Sum_probs=142.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCcee
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 261 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~f----G-------~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L 261 (759)
..++|||+|||+++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|++|+ .|++..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 47999999999999999999999999 5 6777765 578999999999999999999 799999999999
Q ss_pred eEeecCCCCCCCC----------------CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEE
Q 004350 262 DIHFSIPKDNPSE----------------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKF 320 (759)
Q Consensus 262 ~V~~a~~k~~~~~----------------~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgF 320 (759)
.|.++.+...... .....++|||+|||..+|+++|+++|++||.|..|++ ++.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 9999865432110 1134579999999999999999999999999999976 345589999
Q ss_pred EEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 321 IEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 321 VeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
|+|.+.++|.+|++.|||..|+|++|+|.+++++..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999998754
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=7e-28 Score=254.77 Aligned_cols=205 Identities=19% Similarity=0.199 Sum_probs=166.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC---CCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 188 ~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~---gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...++..++|||+|||+++|+++|+++|++||.|..|++. ..++|||||+|.+.++|++|++ +++..+.|++|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 3456778999999999999999999999999999998852 2368999999999999999995 99999999999999
Q ss_pred ecCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccC-CeEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCC
Q 004350 265 FSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRS 339 (759)
Q Consensus 265 ~a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG-~I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~ 339 (759)
++ ...+|||+|||..+|+++|+++|++|| .|..|++. +.++|||||+|.+.++|.+|++.|+|.
T Consensus 114 ~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 87 357899999999999999999999999 99999863 357899999999999999999999999
Q ss_pred eeCCcEEEEEecCCCchh-----------hhhhhhhhHH-HHHHHHhhhccccCCCCCCCCCCCcccCCCccccccccc-
Q 004350 340 DINGKRIKLEPSRPGGAR-----------RNLMQQLNQE-LEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA- 406 (759)
Q Consensus 340 ~i~G~~L~V~~a~~k~~r-----------~~~~~q~~~~-~~q~~~~~~~~~~Gsp~~ns~p~~f~~~Gsp~~~~~m~~- 406 (759)
.|.|+.|+|.++.+.... ..++.++... +++++++.+|. .||.+....++.+
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~---------------~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFE---------------GFGSIEKINIPAGQ 247 (292)
T ss_dssp EETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHG---------------GGSCEEEEECCSCC
T ss_pred EeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHh---------------ccCCeeEEEEEecC
Confidence 999999999999876432 2346666777 77777776644 4556666666555
Q ss_pred C--CCCCCCcccCCC
Q 004350 407 F--SKSPGLGTLSPI 419 (759)
Q Consensus 407 ~--~rS~~~G~v~~~ 419 (759)
. +++++++||...
T Consensus 248 ~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 248 KEHSFNNCCAFMVFE 262 (292)
T ss_dssp C---CCCEEEEEEES
T ss_pred CcCCCCceEEEEEeC
Confidence 2 788999998654
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=1.9e-25 Score=233.77 Aligned_cols=155 Identities=26% Similarity=0.385 Sum_probs=140.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~ 270 (759)
....++|||+|||+++|+++|+++|++||.|..|.+ .+++|||||+|.+.++|++|+..|++..+.|++|.|.|+.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 455689999999999999999999999999999987 47899999999999999999999999999999999999853
Q ss_pred CCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhC-CCeeC---
Q 004350 271 NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALN-RSDIN--- 342 (759)
Q Consensus 271 ~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Ln-g~~i~--- 342 (759)
..+|||+|||..+|+++|+++|++||.|..|++ +++++|||||+|.+.++|.+|++.|+ +..+.
T Consensus 96 --------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 167 (261)
T 3sde_A 96 --------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTT 167 (261)
T ss_dssp --------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSS
T ss_pred --------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCC
Confidence 468999999999999999999999999999976 45678999999999999999999995 55554
Q ss_pred CcEEEEEecCCCch
Q 004350 343 GKRIKLEPSRPGGA 356 (759)
Q Consensus 343 G~~L~V~~a~~k~~ 356 (759)
++.|.|.++.+...
T Consensus 168 ~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 168 PRPVIVEPMEQFDD 181 (261)
T ss_dssp CCBCEEEECCCEES
T ss_pred CceEEEeeccccCc
Confidence 89999999987654
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=1.2e-19 Score=174.04 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=113.1
Q ss_pred CCcceEEEEEecCHHHHHHHHHHc-cccccCCceeeEeecCCCC------------CCCCCccCccceEEeccCCCCcHH
Q 004350 228 CKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKD------------NPSEKDVNQGTLVVFNLDASVSND 294 (759)
Q Consensus 228 gksrGfAFVeF~~~e~A~kAi~~L-~g~~l~gr~L~V~~a~~k~------------~~~~~~~~~~tLfV~NLp~~~Tee 294 (759)
.+.+|+++|+|.+.++|++|++.+ ++..+.| ++.+.++..+. .........++|||+|||+++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 357999999999999999999999 9999999 99999876521 112233456799999999999999
Q ss_pred HHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 295 DLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 295 dLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
+|+++|++||.|.+|++...++|||||+|.+.++|.+|++.|||..|+|++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999977789999999999999999999999999999999999998763
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=7.6e-19 Score=169.45 Aligned_cols=130 Identities=22% Similarity=0.302 Sum_probs=104.1
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE-------eecCCCC--CCCCCccCccceEEeccCCCCcHHHHH
Q 004350 227 ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI-------HFSIPKD--NPSEKDVNQGTLVVFNLDASVSNDDLR 297 (759)
Q Consensus 227 ~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V-------~~a~~k~--~~~~~~~~~~tLfV~NLp~~~TeedLr 297 (759)
..+++|||||+|.+.++|++|++.+++....+..+.+ ....... ..........+|||+|||+++|+++|+
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 4478999999999999999999988764433222222 2211111 111223446799999999999999999
Q ss_pred HHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 298 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 298 ~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
++|++||.|..|++ +++++|||||+|.+.++|.+|++.|||..|+|+.|+|.+++++..
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999986 456799999999999999999999999999999999999987644
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=1e-18 Score=160.56 Aligned_cols=103 Identities=15% Similarity=0.290 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~---~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
..++|||+|||+++|+++|+++|++||.|..|++ .+.++|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4679999999999999999999999999998874 4567999999999999999999999999999999999999776
Q ss_pred CCCCC----CccCccceEEeccCCCCcHHH
Q 004350 270 DNPSE----KDVNQGTLVVFNLDASVSNDD 295 (759)
Q Consensus 270 ~~~~~----~~~~~~tLfV~NLp~~~Teed 295 (759)
..... ......+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 54322 222345799999999999874
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=142.16 Aligned_cols=76 Identities=29% Similarity=0.492 Sum_probs=71.2
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..++|||+|||+++|+++|+++|++||.|++|++ +++++|||||+|.+.++|++|++.|||..|+|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3568999999999999999999999999999976 45678999999999999999999999999999999999998
Q ss_pred C
Q 004350 353 P 353 (759)
Q Consensus 353 ~ 353 (759)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 7
No 25
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.64 E-value=2.3e-16 Score=149.31 Aligned_cols=121 Identities=23% Similarity=0.350 Sum_probs=77.3
Q ss_pred eEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe
Q 004350 232 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE 311 (759)
Q Consensus 232 GfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i 311 (759)
-++|++|.+...|..|+..+++....++. .+.+.. +.......++|||+|||.++|+++|+++|++||.|+.|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR----PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCC----SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCC----CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 36788999999999999999887666554 222322 2333445679999999999999999999999999999986
Q ss_pred -----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCchh
Q 004350 312 -----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 357 (759)
Q Consensus 312 -----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~r 357 (759)
+++++|||||+|.+.++|++|++.|||..|+|++|+|++++++..+
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 3567899999999999999999999999999999999999876543
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.64 E-value=5.1e-16 Score=139.15 Aligned_cols=76 Identities=24% Similarity=0.458 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
..++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|+||.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3579999999999999999999999999999874 57889999999999999999999999999999999999996
Q ss_pred C
Q 004350 268 P 268 (759)
Q Consensus 268 ~ 268 (759)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.64 E-value=8.1e-16 Score=140.62 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=75.8
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..++|||+||++++|+++|+++|++||.|++|++ +++++|||||+|.+.++|++|++.|||..|+|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4578999999999999999999999999999986 46789999999999999999999999999999999999998
Q ss_pred CCchhhhh
Q 004350 353 PGGARRNL 360 (759)
Q Consensus 353 ~k~~r~~~ 360 (759)
.+..++..
T Consensus 85 ~~~~~~~~ 92 (110)
T 3s8s_A 85 KGQQRMKY 92 (110)
T ss_dssp TTHHHHHH
T ss_pred CCcHHHHH
Confidence 87665543
No 28
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.63 E-value=2.6e-16 Score=143.72 Aligned_cols=103 Identities=23% Similarity=0.391 Sum_probs=92.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~--~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
..+.++|||+|||+++++++|+++|++||.|..|.+ .+.++|||||+|.+.++|.+|+..|++..+.|+.|.|.|+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 345789999999999999999999999999999985 567799999999999999999999999999999999999965
Q ss_pred CCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCC
Q 004350 269 KDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGE 305 (759)
Q Consensus 269 k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~ 305 (759)
+... ++++...++++|+++|++||.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4321 567888899999999999984
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.62 E-value=1e-15 Score=140.56 Aligned_cols=80 Identities=24% Similarity=0.400 Sum_probs=72.2
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEec---CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~---~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
..+|||+|||+++|+++|+++|++||.|++|++. +.++|||||+|.+.++|++||+.|+|..|+|++|+|.+++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 4689999999999999999999999999999863 3468999999999999999999999999999999999998876
Q ss_pred hhh
Q 004350 356 ARR 358 (759)
Q Consensus 356 ~r~ 358 (759)
.+.
T Consensus 85 ~~~ 87 (115)
T 4f25_A 85 ERE 87 (115)
T ss_dssp C--
T ss_pred ccc
Confidence 554
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=5.8e-16 Score=156.69 Aligned_cols=76 Identities=24% Similarity=0.412 Sum_probs=72.0
Q ss_pred CccceEEeccC-CCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 278 NQGTLVVFNLD-ASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 278 ~~~tLfV~NLp-~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
..++|||+||+ +.+|+++|+++|++||.|.+|++...++|||||+|.+.++|++|++.|||..|.|++|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 35789999999 89999999999999999999999877899999999999999999999999999999999999864
No 31
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.61 E-value=4.3e-16 Score=157.68 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=108.4
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||+++|+++|+++|++||.|++|++ +++++|||||+|.+.++|.+|++.+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34579999999999999999999999999999986 3567899999999999999999999999999999999999
Q ss_pred CCCchh------hhhhhhhhHHHHHHHHhhhccccCCCCCCCCCCCcccCCCcccccccccCCCCCCCcccCCC
Q 004350 352 RPGGAR------RNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPI 419 (759)
Q Consensus 352 ~~k~~r------~~~~~q~~~~~~q~~~~~~~~~~Gsp~~ns~p~~f~~~Gsp~~~~~m~~~~rS~~~G~v~~~ 419 (759)
...... +.++.++...+++++++.+ |..||.+....++.+.+.+++||||...
T Consensus 93 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~---------------F~~~G~i~~~~i~~d~~~~~g~~fV~f~ 151 (213)
T 4f02_A 93 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDT---------------FSAFGNILSCKVVCDENGSKGYGFVHFE 151 (213)
T ss_dssp CCCTHHHHHCTTEEEEESCCTTCCHHHHHHH---------------HGGGSCEEEEEEEEETTEEEEEEEEEES
T ss_pred cccccccccccccceECCcccccHHHHHHHH---------------HhhcCCeEEEEeeccCCCCceEEEEEeC
Confidence 765432 3467778888888888876 4556777777888887788999999754
No 32
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=135.85 Aligned_cols=95 Identities=24% Similarity=0.367 Sum_probs=81.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCCCCC
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSE 274 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~~~~ 274 (759)
++|||+|||+++|+++|+++|++||+|..|.+...++|||||+|.+.++|++|++.|++..+.|++|.|+|+.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999986534799999999999999999999999999999999999977653221
Q ss_pred ------CccCccceEEeccCC
Q 004350 275 ------KDVNQGTLVVFNLDA 289 (759)
Q Consensus 275 ------~~~~~~tLfV~NLp~ 289 (759)
......+|||+||+.
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCCC
T ss_pred CCCCCccccCCCceecCCCCC
Confidence 112356899999973
No 33
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.60 E-value=2.9e-15 Score=134.84 Aligned_cols=80 Identities=13% Similarity=0.260 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccc--cCCceeeEeecC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSI 267 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~--l~gr~L~V~~a~ 267 (759)
...++++|||+|||.++|+++|+++|++||.|..|++. +.||||||+|.+.++|++|++.|++.. +.|++|+|+|+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 34578999999999999999999999999999999864 679999999999999999999999886 789999999997
Q ss_pred CCC
Q 004350 268 PKD 270 (759)
Q Consensus 268 ~k~ 270 (759)
.++
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 653
No 34
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.59 E-value=8.9e-16 Score=135.28 Aligned_cols=77 Identities=22% Similarity=0.386 Sum_probs=69.8
Q ss_pred cceEEeccCCCCcHHHHHHHhhccC-CeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhC-CCeeCCcEEEEEecC
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALN-RSDINGKRIKLEPSR 352 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG-~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Ln-g~~i~G~~L~V~~a~ 352 (759)
++|||+|||+++|+++|+++|++|| .|++|++ ++.++|||||+|.+.++|++|++.|+ +..|+|++|+|.+|+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 8999875 46789999999999999999999884 568999999999998
Q ss_pred CCch
Q 004350 353 PGGA 356 (759)
Q Consensus 353 ~k~~ 356 (759)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 35
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=2.5e-15 Score=146.50 Aligned_cols=123 Identities=21% Similarity=0.300 Sum_probs=72.9
Q ss_pred EEecCHHHHHHHHHHccccccC--CceeeEeecCCCC---------------C-CCCCccCccceEEeccCCCCcHHHHH
Q 004350 236 ISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKD---------------N-PSEKDVNQGTLVVFNLDASVSNDDLR 297 (759)
Q Consensus 236 VeF~~~e~A~kAi~~L~g~~l~--gr~L~V~~a~~k~---------------~-~~~~~~~~~tLfV~NLp~~~TeedLr 297 (759)
.+|.+.++|+.|+..|.+...+ |+.+...+..... . ........++|||+|||..+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999999999887665 6565555432110 0 01122345689999999999999999
Q ss_pred HHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCchhh
Q 004350 298 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARR 358 (759)
Q Consensus 298 ~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~r~ 358 (759)
++|++||.|..|.+ ++.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.++..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999986 34468999999999999999999999999999999999998766543
No 36
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.8e-15 Score=135.29 Aligned_cols=83 Identities=25% Similarity=0.316 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccc--cccCCceeeEeecC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSI 267 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g--~~l~gr~L~V~~a~ 267 (759)
...+.++|||+|||+++|+++|+++|++||+|..|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 45678999999999999999999999999999999865 4599999999999999999998864 68999999999998
Q ss_pred CCCCCC
Q 004350 268 PKDNPS 273 (759)
Q Consensus 268 ~k~~~~ 273 (759)
++....
T Consensus 91 ~~~~~~ 96 (105)
T 1sjq_A 91 HKELKT 96 (105)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 765443
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.8e-15 Score=130.58 Aligned_cols=81 Identities=26% Similarity=0.400 Sum_probs=74.7
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|||..|+|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999987 4567899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987654
No 38
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=133.99 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=70.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHcc-ccccCCceeeEeec
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ-NKPLRRRKLDIHFS 266 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG-~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~-g~~l~gr~L~V~~a 266 (759)
+++|||+|||+++|+++|+++|++|| .|..|++ +++++|||||+|.+.++|++|++.++ +..+.|++|.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 7888863 47899999999999999999999874 56799999999999
Q ss_pred CCCCCC
Q 004350 267 IPKDNP 272 (759)
Q Consensus 267 ~~k~~~ 272 (759)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876544
No 39
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=129.35 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
..+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456799999999999999999999999999999985 567899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004350 266 SIPKDNP 272 (759)
Q Consensus 266 a~~k~~~ 272 (759)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876654
No 40
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.58 E-value=6.2e-15 Score=134.69 Aligned_cols=79 Identities=18% Similarity=0.377 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
+.+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456799999999999999999999999999999874 478999999999999999999999999999999999999
Q ss_pred cCCC
Q 004350 266 SIPK 269 (759)
Q Consensus 266 a~~k 269 (759)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8543
No 41
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.58 E-value=1.7e-15 Score=145.01 Aligned_cols=126 Identities=25% Similarity=0.369 Sum_probs=103.8
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
.++|||+|||.++|+++|+++|++||.|.+|++ +++++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 468999999999999999999999999999976 455679999999999999999999999999999999999987
Q ss_pred Cch----hhhhhhhhhHHHHHHHHhhhccccCCCCCCCCCCCcccCCCccccccccc--CCCCCCCcccCCC
Q 004350 354 GGA----RRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA--FSKSPGLGTLSPI 419 (759)
Q Consensus 354 k~~----r~~~~~q~~~~~~q~~~~~~~~~~Gsp~~ns~p~~f~~~Gsp~~~~~m~~--~~rS~~~G~v~~~ 419 (759)
... ...++.+++..+++++++.++..+ |.+....++.+ .+++++++||...
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~---------------G~i~~~~i~~~~~~g~~~g~afV~f~ 138 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQY---------------GRIITSRILVDQVTGVSRGVGFIRFD 138 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGG---------------SCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhc---------------CCEeEEEEEecCCCCCccceEEEEeC
Confidence 654 334677788888888888775554 45554444444 5677888888643
No 42
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=7.3e-15 Score=134.09 Aligned_cols=102 Identities=20% Similarity=0.391 Sum_probs=87.7
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe--cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i--~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
..++|||+|||..+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||..++|+.|+|.++++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 3578999999999999999999999999999987 45678999999999999999999999999999999999998765
Q ss_pred hhhhhhhhhhHHHHHHHHhhhccccCCC
Q 004350 356 ARRNLMQQLNQELEQDEARGFRHQVGSP 383 (759)
Q Consensus 356 ~r~~~~~q~~~~~~q~~~~~~~~~~Gsp 383 (759)
.. +++.....++++..++..+|..
T Consensus 87 ~~----~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 87 AF----QKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp HT----TTSCHHHHHHHHHHHHHHHCCC
T ss_pred hh----hhhhHhHhHHHHHHHHHHhCCC
Confidence 44 3445566667777777777744
No 43
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.57 E-value=4.3e-15 Score=130.12 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=69.0
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..-|||+||++.+|+++|+++|.+||+|+++++. .++|||||+|.++++|.+|++.||+..+.|++|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4579999999999999999999999999999984 479999999999999999999999999999999999993
No 44
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.57 E-value=7.7e-15 Score=125.72 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=70.8
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
.+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|+|++|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999976 3556899999999999999999999999999999999999886
Q ss_pred c
Q 004350 355 G 355 (759)
Q Consensus 355 ~ 355 (759)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=129.68 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=74.0
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
....++|||+|||..+|+++|+++|++||.|..|++. ++++|||||+|.+.++|++|++.|||..|+|++|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3456799999999999999999999999999999863 456799999999999999999999999999999999999
Q ss_pred CCCch
Q 004350 352 RPGGA 356 (759)
Q Consensus 352 ~~k~~ 356 (759)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98754
No 46
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=131.26 Aligned_cols=81 Identities=28% Similarity=0.452 Sum_probs=73.6
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec--CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~--~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
....++|||+|||.++|+++|+++|++||.|+.|++. +.+++||||+|.+.++|++|++.||+..|+|++|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 3456799999999999999999999999999999873 44689999999999999999999999999999999999987
Q ss_pred Cch
Q 004350 354 GGA 356 (759)
Q Consensus 354 k~~ 356 (759)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.57 E-value=2e-15 Score=134.52 Aligned_cols=75 Identities=23% Similarity=0.388 Sum_probs=67.8
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCC--eEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCC----eeCCcEEE
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGE--VKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRS----DINGKRIK 347 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~--I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~----~i~G~~L~ 347 (759)
-.||||+|||+.+|+++|+++|++||. |.+|++ +++++|||||+|.+.++|++|++.|||. .|+||+|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 468999999999999999999999995 567765 4678999999999999999999999997 59999999
Q ss_pred EEecCC
Q 004350 348 LEPSRP 353 (759)
Q Consensus 348 V~~a~~ 353 (759)
|+||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999975
No 48
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.2e-15 Score=134.95 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=71.9
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCC--CeeCCcEEEEEecCCCc
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKLEPSRPGG 355 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng--~~i~G~~L~V~~a~~k~ 355 (759)
..++|||+|||+++|+++|+++|++||.|++|++.. .+|||||+|.+.++|.+|++.|++ ..|+|++|+|.+++++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 467899999999999999999999999999999864 489999999999999999998864 78999999999998765
Q ss_pred hh
Q 004350 356 AR 357 (759)
Q Consensus 356 ~r 357 (759)
..
T Consensus 94 ~~ 95 (105)
T 1sjq_A 94 LK 95 (105)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.57 E-value=7.7e-15 Score=126.83 Aligned_cols=77 Identities=17% Similarity=0.355 Sum_probs=69.8
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
...+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..++|+.|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 3568999999999999999999999999999976 34568999999999999999999999999999999999998
Q ss_pred CC
Q 004350 353 PG 354 (759)
Q Consensus 353 ~k 354 (759)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 50
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=130.64 Aligned_cols=83 Identities=23% Similarity=0.311 Sum_probs=75.1
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
.....++|||+|||..+|+++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|++..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3345679999999999999999999999999999986 45678999999999999999999999999999999999
Q ss_pred ecCCCchh
Q 004350 350 PSRPGGAR 357 (759)
Q Consensus 350 ~a~~k~~r 357 (759)
+++++..+
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99887543
No 51
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=131.51 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=73.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccc--cCCceeeEeec
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFS 266 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~--l~gr~L~V~~a 266 (759)
....++++|||+|||+++++++|+++|++||.|..|.+. +.||||||+|.+.++|++|++.|++.. +.|++|+|+|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 345678999999999999999999999999999999864 469999999999999999999987754 99999999999
Q ss_pred CCCCC
Q 004350 267 IPKDN 271 (759)
Q Consensus 267 ~~k~~ 271 (759)
..+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 76543
No 52
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=130.13 Aligned_cols=83 Identities=24% Similarity=0.451 Sum_probs=75.0
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec------CCCCceEEEEECCHHHHHHHHHHh-CCCeeCCcEEE
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALRAL-NRSDINGKRIK 347 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~------~~s~GfgFVeF~~~e~A~~Al~~L-ng~~i~G~~L~ 347 (759)
.....++|||+|||..+|+++|+++|++||.|+.|++. +.++|||||+|.+.++|++|++.| |+..|.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 34456899999999999999999999999999999873 345899999999999999999999 99999999999
Q ss_pred EEecCCCchh
Q 004350 348 LEPSRPGGAR 357 (759)
Q Consensus 348 V~~a~~k~~r 357 (759)
|.+++++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999887543
No 53
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=8.2e-15 Score=131.89 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=71.0
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCe--eCCcEEEEEecCCCc
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSD--INGKRIKLEPSRPGG 355 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~--i~G~~L~V~~a~~k~ 355 (759)
..++|||+|||+++|+++|+++|++||.|++|++. +.+|||||+|.+.++|.+|++.|++.. |.|++|+|.+|+++.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 46789999999999999999999999999999985 468999999999999999999999875 789999999998753
No 54
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=127.09 Aligned_cols=79 Identities=27% Similarity=0.476 Sum_probs=72.3
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
....++|||+|||..+|+++|+++|++||.|..|++. ++++|||||+|.+.++|++|++.|||..|+|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999863 46689999999999999999999999999999999999
Q ss_pred cCCC
Q 004350 351 SRPG 354 (759)
Q Consensus 351 a~~k 354 (759)
++++
T Consensus 92 a~~g 95 (95)
T 2cqc_A 92 PSSG 95 (95)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 9864
No 55
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=135.22 Aligned_cols=85 Identities=25% Similarity=0.298 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccc--cccCCceeeEee
Q 004350 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHF 265 (759)
Q Consensus 188 ~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g--~~l~gr~L~V~~ 265 (759)
.....+.++|||+|||+++|+++|+++|++||.|..|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+|.|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3455678999999999999999999999999999999864 4699999999999999999999875 579999999999
Q ss_pred cCCCCCCC
Q 004350 266 SIPKDNPS 273 (759)
Q Consensus 266 a~~k~~~~ 273 (759)
+.++....
T Consensus 104 a~~k~~~~ 111 (119)
T 2ad9_A 104 SNHKELKT 111 (119)
T ss_dssp CSSSSCCC
T ss_pred ccCCCCCc
Confidence 98765443
No 56
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.1e-14 Score=128.82 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567899999999999999999999999999999984 5678999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 004350 264 HFSIPKDN 271 (759)
Q Consensus 264 ~~a~~k~~ 271 (759)
+|+.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99977654
No 57
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.3e-14 Score=128.88 Aligned_cols=84 Identities=25% Similarity=0.464 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe------CCCcceEEEEEecCHHHHHHHHHHc-cccccCCcee
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKL 261 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~------~gksrGfAFVeF~~~e~A~kAi~~L-~g~~l~gr~L 261 (759)
......++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+..| ++..|.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567899999999999999999999999999999985 4557999999999999999999999 9999999999
Q ss_pred eEeecCCCCCC
Q 004350 262 DIHFSIPKDNP 272 (759)
Q Consensus 262 ~V~~a~~k~~~ 272 (759)
.|+|+.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 58
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.56 E-value=9.5e-15 Score=133.48 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=74.0
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||.++|+++|+++|++||.|+.|++ +++++|||||+|.+.++|++|++.||+..|+|++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35579999999999999999999999999999976 4556899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 987654
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=129.89 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=75.8
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec---CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~---~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
.....++|||+|||+.+|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|+|++|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34467899999999999999999999999999999763 467899999999999999999999999999999999999
Q ss_pred CCCchhh
Q 004350 352 RPGGARR 358 (759)
Q Consensus 352 ~~k~~r~ 358 (759)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876543
No 60
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.2e-14 Score=128.33 Aligned_cols=83 Identities=31% Similarity=0.402 Sum_probs=74.7
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecC---CCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~---~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
....++|||+|||..+|+++|+++|++||.|+.|++.. .++|||||+|.+.++|++|++.|++..|.|+.|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34568999999999999999999999999999998732 367999999999999999999999999999999999999
Q ss_pred CCchhh
Q 004350 353 PGGARR 358 (759)
Q Consensus 353 ~k~~r~ 358 (759)
++..++
T Consensus 92 ~~~~~~ 97 (103)
T 2cqi_A 92 TPSSQK 97 (103)
T ss_dssp CTTCCC
T ss_pred CCcccc
Confidence 865543
No 61
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=125.74 Aligned_cols=78 Identities=17% Similarity=0.388 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
.+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999884 5668999999999999999999999999999999999999
Q ss_pred CCC
Q 004350 267 IPK 269 (759)
Q Consensus 267 ~~k 269 (759)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 62
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.55 E-value=3.3e-14 Score=129.72 Aligned_cols=84 Identities=15% Similarity=0.364 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999874 5677999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 004350 264 HFSIPKDNP 272 (759)
Q Consensus 264 ~~a~~k~~~ 272 (759)
+|+.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 63
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.6e-14 Score=127.17 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|+|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4456799999999999999999999999999999884 367889999999999999999999999999999999999
Q ss_pred cCCCC
Q 004350 266 SIPKD 270 (759)
Q Consensus 266 a~~k~ 270 (759)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 97754
No 64
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1e-14 Score=131.82 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccc--cCCceeeEeec
Q 004350 190 GEHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFS 266 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~-~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~--l~gr~L~V~~a 266 (759)
...+.++|||+|||+ ++|+++|+++|++||.|..|++. +.+|||||+|.+.++|++|++.|++.. |.|++|+|+|+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 345789999999999 99999999999999999999875 568999999999999999999998754 99999999999
Q ss_pred CCCC
Q 004350 267 IPKD 270 (759)
Q Consensus 267 ~~k~ 270 (759)
..+.
T Consensus 90 ~~~~ 93 (102)
T 1x4d_A 90 QKYK 93 (102)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 7544
No 65
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.55 E-value=1.4e-14 Score=124.71 Aligned_cols=75 Identities=27% Similarity=0.449 Sum_probs=69.9
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|.+|++.|||..|+|++|+|++++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4679999999999999999999999999999976 34568999999999999999999999999999999999985
No 66
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.8e-14 Score=126.71 Aligned_cols=82 Identities=23% Similarity=0.459 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++ |++..|.|++|.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999985 46689999999999999999999 99999999999999
Q ss_pred ecCCCCCC
Q 004350 265 FSIPKDNP 272 (759)
Q Consensus 265 ~a~~k~~~ 272 (759)
|+.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 67
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.55 E-value=2.2e-14 Score=126.82 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=73.7
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
.++|||+|||..+|+++|+++|++||.|..|++. +.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4689999999999999999999999999999873 56689999999999999999999999999999999999998
Q ss_pred Cchhh
Q 004350 354 GGARR 358 (759)
Q Consensus 354 k~~r~ 358 (759)
+....
T Consensus 82 ~~~~~ 86 (96)
T 2x1f_A 82 SDISG 86 (96)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 76543
No 68
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.55 E-value=1.6e-14 Score=123.72 Aligned_cols=77 Identities=27% Similarity=0.450 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
+.+|||+|||.++++++|+++|++||.|..+.+ +++++|||||+|.+.++|++|+..|++..+.|++|.|+|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999874 467799999999999999999999999999999999999976
Q ss_pred CC
Q 004350 269 KD 270 (759)
Q Consensus 269 k~ 270 (759)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 69
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=130.20 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=75.0
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
.....++|||+|||..+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|+|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3445689999999999999999999999999999976 34568999999999999999999999999999999999
Q ss_pred ecCCCchh
Q 004350 350 PSRPGGAR 357 (759)
Q Consensus 350 ~a~~k~~r 357 (759)
+++++..+
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887544
No 70
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=128.65 Aligned_cols=83 Identities=22% Similarity=0.431 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+..|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999874 4678999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 004350 264 HFSIPKDN 271 (759)
Q Consensus 264 ~~a~~k~~ 271 (759)
+|+.++..
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 71
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=126.69 Aligned_cols=80 Identities=26% Similarity=0.377 Sum_probs=73.2
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..++|||+|||..+|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|||..|+|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4578999999999999999999999999999986 35568999999999999999999999999999999999998
Q ss_pred CCchh
Q 004350 353 PGGAR 357 (759)
Q Consensus 353 ~k~~r 357 (759)
++..+
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 86543
No 72
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-14 Score=129.42 Aligned_cols=82 Identities=20% Similarity=0.378 Sum_probs=74.9
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhC------CCeeCCcE
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALN------RSDINGKR 345 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Ln------g~~i~G~~ 345 (759)
...++|||+|||+.+|+++|+++|++||.|..|++. +.++|||||+|.+.++|.+|++.|+ +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456799999999999999999999999999999873 5678999999999999999999999 99999999
Q ss_pred EEEEecCCCchhh
Q 004350 346 IKLEPSRPGGARR 358 (759)
Q Consensus 346 L~V~~a~~k~~r~ 358 (759)
|+|.+++++..+.
T Consensus 93 l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 93 LKVDLAVTRDEAA 105 (111)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEECCCCccCC
Confidence 9999999876543
No 73
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=127.74 Aligned_cols=80 Identities=23% Similarity=0.444 Sum_probs=73.3
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||..+|+++|+++|++||.|..|++. ++++|||||+|.+.++|++|++ |++..|+|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999873 4578999999999999999998 9999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 987654
No 74
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=127.63 Aligned_cols=81 Identities=25% Similarity=0.439 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--------CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~--------~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
.+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+..|++..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45789999999999999999999999999999874 2278999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 004350 264 HFSIPKDNP 272 (759)
Q Consensus 264 ~~a~~k~~~ 272 (759)
+|+.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 75
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.55 E-value=4.3e-14 Score=126.74 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCC---ceee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR---RKLD 262 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g---r~L~ 262 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.+ ++|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456899999999999999999999999999999874 45679999999999999999999999999998 9999
Q ss_pred EeecCCCCCC
Q 004350 263 IHFSIPKDNP 272 (759)
Q Consensus 263 V~~a~~k~~~ 272 (759)
|+|+.++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876543
No 76
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=127.30 Aligned_cols=79 Identities=24% Similarity=0.407 Sum_probs=72.1
Q ss_pred CccceEEeccCCCCcHHHHH----HHhhccCCeEEEEecCC--CCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 278 NQGTLVVFNLDASVSNDDLR----QIFGAYGEVKEIRETPH--KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr----~~Fs~fG~I~~v~i~~~--s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...+|||+|||+.+|+++|+ ++|++||.|++|++... .++||||+|.+.++|++|++.|||..|+|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45789999999999999999 99999999999998522 2899999999999999999999999999999999999
Q ss_pred CCCch
Q 004350 352 RPGGA 356 (759)
Q Consensus 352 ~~k~~ 356 (759)
+++..
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87653
No 77
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.6e-14 Score=125.43 Aligned_cols=76 Identities=32% Similarity=0.455 Sum_probs=70.5
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||..+|+++|+++|++||.|..|++. ++++|||||+|.+.++|++|++.|||..|+|++|+|++|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456799999999999999999999999999999873 456899999999999999999999999999999999998
Q ss_pred C
Q 004350 352 R 352 (759)
Q Consensus 352 ~ 352 (759)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 78
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-14 Score=125.78 Aligned_cols=81 Identities=23% Similarity=0.425 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
.+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999884 4678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004350 267 IPKDNP 272 (759)
Q Consensus 267 ~~k~~~ 272 (759)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 79
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=2.3e-15 Score=144.70 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
..++|||+|||+++++++|+++|++||.|..+.+ +++++|||||+|.+.++|.+|++ +++..+.|++|.|.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 4679999999999999999999999999999883 46789999999999999999998 89999999999999998
Q ss_pred CC
Q 004350 268 PK 269 (759)
Q Consensus 268 ~k 269 (759)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 80
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.54 E-value=2.6e-14 Score=124.97 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~---~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
..+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|+|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 346799999999999999999999999999999874 46689999999999999999999999999999999999997
Q ss_pred CCCC
Q 004350 268 PKDN 271 (759)
Q Consensus 268 ~k~~ 271 (759)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 81
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=1.1e-14 Score=133.54 Aligned_cols=78 Identities=19% Similarity=0.154 Sum_probs=71.4
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccC-CeEEEEec-CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRET-PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG-~I~~v~i~-~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
...+|||+|||+++|+++|+++|++|| +|..+++. .+++|||||+|.+.++|++||+.|||..|+|++|+|++++...
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 356899999999999999999999999 99999984 5689999999999999999999999999999999999997553
No 82
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.6e-14 Score=128.87 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHcc--ccccCCceeeEeec
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFS 266 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~--g~~l~gr~L~V~~a 266 (759)
....+.++|||+|||+++++++|+++|++||.|..|.+. +.||||||+|.+.++|++|++.|+ +..+.|++|+|+|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 345678999999999999999999999999999999864 459999999999999999999875 56799999999999
Q ss_pred CCCCC
Q 004350 267 IPKDN 271 (759)
Q Consensus 267 ~~k~~ 271 (759)
.++..
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 76554
No 83
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=127.61 Aligned_cols=83 Identities=18% Similarity=0.398 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~---~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
...+.++|||+|||+++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+..|++..|.|++|.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4557899999999999999999999999999999874 3578999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004350 267 IPKDNP 272 (759)
Q Consensus 267 ~~k~~~ 272 (759)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 876654
No 84
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.54 E-value=2.5e-14 Score=130.53 Aligned_cols=82 Identities=18% Similarity=0.379 Sum_probs=74.5
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
....++|||+|||..+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|+|..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999986 345689999999999999999999999999999999999
Q ss_pred cCCCchh
Q 004350 351 SRPGGAR 357 (759)
Q Consensus 351 a~~k~~r 357 (759)
++++..+
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9887554
No 85
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=127.16 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=72.4
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEEecCCCc
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIN--GKRIKLEPSRPGG 355 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~--G~~L~V~~a~~k~ 355 (759)
..++|||+|||.++|+++|+++|++||.|+.|++... ++||||+|.+.++|++|++.||+..|. |++|+|.+++++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 4578999999999999999999999999999998643 799999999999999999999999999 9999999999865
Q ss_pred h
Q 004350 356 A 356 (759)
Q Consensus 356 ~ 356 (759)
.
T Consensus 95 ~ 95 (97)
T 1why_A 95 S 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 86
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=129.19 Aligned_cols=81 Identities=17% Similarity=0.439 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+..|++..+.|++|.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456789999999999999999999999999999884 36789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004350 265 FSIPKD 270 (759)
Q Consensus 265 ~a~~k~ 270 (759)
|+.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997654
No 87
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=125.65 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=72.6
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
...++|||+|||.++|+++|+++|++||.|+.|++. ++||||+|.+.++|++|++.||+..|+|++|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 356799999999999999999999999999999986 79999999999999999999999999999999999988654
Q ss_pred h
Q 004350 357 R 357 (759)
Q Consensus 357 r 357 (759)
+
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 88
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.54 E-value=1.9e-14 Score=127.28 Aligned_cols=78 Identities=23% Similarity=0.435 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
++++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|+|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4689999999999999999999999999999984 36779999999999999999999999999999999999997
Q ss_pred CCC
Q 004350 268 PKD 270 (759)
Q Consensus 268 ~k~ 270 (759)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 89
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.54 E-value=1.8e-14 Score=130.50 Aligned_cols=82 Identities=26% Similarity=0.392 Sum_probs=74.3
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
....++|||+|||..+|+++|+++|++||.|..|++. +.++|||||+|.+.++|.+|++.|+|..|+|++|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999999873 45689999999999999999999999999999999999
Q ss_pred cCCCchh
Q 004350 351 SRPGGAR 357 (759)
Q Consensus 351 a~~k~~r 357 (759)
++++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9876543
No 90
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3e-14 Score=128.37 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=71.8
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEEecCCC
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL--NRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~L--ng~~i~G~~L~V~~a~~k 354 (759)
...++|||+|||+++|+++|+++|++||.|+.|.+.. .+|||||+|.+.++|.+|++.| ++..|.|++|+|.+++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 3567999999999999999999999999999998854 4899999999999999999987 467899999999999876
Q ss_pred chh
Q 004350 355 GAR 357 (759)
Q Consensus 355 ~~r 357 (759)
...
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 543
No 91
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=128.50 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=72.6
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEec--------CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~--------~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
..++|||+|||.++|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|+|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45789999999999999999999999999999763 1567999999999999999999999999999999999
Q ss_pred ecCCCchh
Q 004350 350 PSRPGGAR 357 (759)
Q Consensus 350 ~a~~k~~r 357 (759)
+++++...
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99876543
No 92
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.54 E-value=2.2e-14 Score=131.09 Aligned_cols=84 Identities=15% Similarity=0.341 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999988874 5678999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 004350 264 HFSIPKDNP 272 (759)
Q Consensus 264 ~~a~~k~~~ 272 (759)
+|+.++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999876543
No 93
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.9e-14 Score=128.14 Aligned_cols=82 Identities=17% Similarity=0.325 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~--~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
...+.++|||+|||+++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 4556799999999999999999999999999999885 45678999999999999999999999999999999999997
Q ss_pred CCCC
Q 004350 268 PKDN 271 (759)
Q Consensus 268 ~k~~ 271 (759)
++..
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 94
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=128.28 Aligned_cols=83 Identities=27% Similarity=0.381 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566899999999999999999999999999999984 3678999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 004350 264 HFSIPKDN 271 (759)
Q Consensus 264 ~~a~~k~~ 271 (759)
+|+.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99976544
No 95
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=128.93 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=74.0
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||..+|+++|+++|++||.|+.|++. ++++|||||+|.+.++|++|++.||+..|+|++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 356799999999999999999999999999999863 457899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887544
No 96
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.1e-14 Score=126.57 Aligned_cols=83 Identities=18% Similarity=0.432 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~---~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
......++|||+|||+++++++|+++|++||.|..|.+ ...++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34567899999999999999999999999999999884 234789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004350 266 SIPKDN 271 (759)
Q Consensus 266 a~~k~~ 271 (759)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987654
No 97
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.54 E-value=2.7e-14 Score=128.11 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=74.1
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEE
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDING---KRIKLE 349 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G---~~L~V~ 349 (759)
...++|||+|||..+|+++|+++|++||.|+.|++. +.++|||||+|.+.++|++|++.|||..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 356899999999999999999999999999999863 4458999999999999999999999999998 999999
Q ss_pred ecCCCchhh
Q 004350 350 PSRPGGARR 358 (759)
Q Consensus 350 ~a~~k~~r~ 358 (759)
+++++..++
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999876543
No 98
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=129.93 Aligned_cols=80 Identities=25% Similarity=0.404 Sum_probs=73.2
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
....++|||+|||..+|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456789999999999999999999999999999863 55689999999999999999999999999999999999
Q ss_pred cCCCc
Q 004350 351 SRPGG 355 (759)
Q Consensus 351 a~~k~ 355 (759)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 99
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=4.3e-14 Score=127.86 Aligned_cols=83 Identities=20% Similarity=0.448 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHcc------ccccCC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ------NKPLRR 258 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~------g~~l~g 258 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+..|+ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 4566899999999999999999999999999999985 35789999999999999999999999 999999
Q ss_pred ceeeEeecCCCCCC
Q 004350 259 RKLDIHFSIPKDNP 272 (759)
Q Consensus 259 r~L~V~~a~~k~~~ 272 (759)
++|.|+|+.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876543
No 100
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.2e-14 Score=126.51 Aligned_cols=83 Identities=20% Similarity=0.366 Sum_probs=74.5
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecC---CCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~---~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
.....++|||+|||.++|+++|+++|++||.|..|++.. .++|||||+|.+.++|++|++.|+|..|+|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 344568999999999999999999999999999998742 35899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 887543
No 101
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=124.44 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=71.2
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecC-----C-CCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP-----H-KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~-----~-s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
..++|||+|||.++|+++|+++|++||.|..|++.. . ++|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 356899999999999999999999999999998621 2 6899999999999999999999999999999999999
Q ss_pred CCCc
Q 004350 352 RPGG 355 (759)
Q Consensus 352 ~~k~ 355 (759)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 102
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=130.52 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=70.1
Q ss_pred CccceEEeccCC-CCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEecCCC
Q 004350 278 NQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRS--DINGKRIKLEPSRPG 354 (759)
Q Consensus 278 ~~~tLfV~NLp~-~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~--~i~G~~L~V~~a~~k 354 (759)
..++|||+|||+ ++|+++|+++|++||.|.+|++. +.++||||+|.+.++|.+|++.|++. .|.|++|+|.+|++.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 467899999999 99999999999999999999985 35699999999999999999999864 599999999999865
Q ss_pred c
Q 004350 355 G 355 (759)
Q Consensus 355 ~ 355 (759)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 103
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=129.00 Aligned_cols=80 Identities=30% Similarity=0.463 Sum_probs=73.5
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||.++|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999863 567899999999999999999999999999999999999
Q ss_pred CCCch
Q 004350 352 RPGGA 356 (759)
Q Consensus 352 ~~k~~ 356 (759)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87644
No 104
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=129.32 Aligned_cols=80 Identities=24% Similarity=0.513 Sum_probs=73.4
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..++|||+|||+++|+++|+++|++||.|+.|++. +.++|||||+|.+.++|++|++.||+..|+|++|+|.+++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 56799999999999999999999999999999873 3468999999999999999999999999999999999998
Q ss_pred CCchh
Q 004350 353 PGGAR 357 (759)
Q Consensus 353 ~k~~r 357 (759)
++...
T Consensus 91 ~~~~~ 95 (102)
T 1x5s_A 91 KSSDN 95 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76544
No 105
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6.6e-14 Score=125.20 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC---CCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~---gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
....+.++|||+|||+++++++|+++|++||.|..|.+. ..++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999998852 34699999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004350 266 SIPKDNP 272 (759)
Q Consensus 266 a~~k~~~ 272 (759)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 106
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=130.41 Aligned_cols=81 Identities=27% Similarity=0.393 Sum_probs=73.8
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
.....++|||+|||..+|+++|+++|++||.|..|++ +++++|||||+|.+.++|.+|++.|+|..|+|++|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445679999999999999999999999999999976 34568999999999999999999999999999999999
Q ss_pred ecCCCc
Q 004350 350 PSRPGG 355 (759)
Q Consensus 350 ~a~~k~ 355 (759)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998864
No 107
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.53 E-value=3.4e-15 Score=167.62 Aligned_cols=145 Identities=23% Similarity=0.343 Sum_probs=102.6
Q ss_pred HHHHhhccCCeEEEEe----------CCCcceEE--EEEecCHHHHHHHHHHccccccCCc-----------e--eeEee
Q 004350 211 LRSLFEQYGDIRTLYT----------ACKHRGFV--MISYYDIRAARTAMRALQNKPLRRR-----------K--LDIHF 265 (759)
Q Consensus 211 Lr~lFs~fG~I~~v~~----------~gksrGfA--FVeF~~~e~A~kAi~~L~g~~l~gr-----------~--L~V~~ 265 (759)
|.++|.++|.|..|.. +....|++ |++|....++..++..++......+ . ..+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7889999999887621 11223333 7788776655544433222111111 0 00111
Q ss_pred cCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCe
Q 004350 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSD 340 (759)
Q Consensus 266 a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~ 340 (759)
..+...+.......++|||+|||+.+|+++|+++|++||.|+.|.+ ++.++|||||+|.+.++|.+||+.|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 1122222223344579999999999999999999999999999986 45679999999999999999999999999
Q ss_pred eCCcEEEEEecCCCc
Q 004350 341 INGKRIKLEPSRPGG 355 (759)
Q Consensus 341 i~G~~L~V~~a~~k~ 355 (759)
|+|+.|.|.+++++.
T Consensus 169 i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 169 IDGRRVLVDVERGRT 183 (437)
T ss_pred ECCEEEEEEEeCCCC
Confidence 999999999998754
No 108
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.53 E-value=4.6e-15 Score=129.91 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=65.8
Q ss_pred cceEEeccCCCCcHHHHHHHhhccC--CeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG--~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
.+|||+|||+++|+++|+++|++|| .|.+|++ +++++|||||+|.+.++|++|++.|||..|+|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 8988875 55778999999999999999999999999999999999998
Q ss_pred CCch
Q 004350 353 PGGA 356 (759)
Q Consensus 353 ~k~~ 356 (759)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 109
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=2.3e-14 Score=126.09 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=71.3
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
...++|||+|||+.+|+++|+++|++||.|+.|++. ++++|||||+|.+.++|++|++.|||..|+|++|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 356799999999999999999999999999999863 3458999999999999999999999999999999999987
Q ss_pred CC
Q 004350 353 PG 354 (759)
Q Consensus 353 ~k 354 (759)
.+
T Consensus 94 ~G 95 (95)
T 2ywk_A 94 SG 95 (95)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 110
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=5.8e-15 Score=154.12 Aligned_cols=126 Identities=19% Similarity=0.270 Sum_probs=107.6
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
....++|||+|||+++|+++|+++|++||.|..|++. +++|||||+|.+.++|.+|+..|+|..|.|+.|+|.++.+.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~- 96 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG- 96 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS-
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC-
Confidence 3456789999999999999999999999999999984 56899999999999999999999999999999999999875
Q ss_pred hhhhhhhhhhHHHHHHHHhhhccccCCCCCCCCCCCcccCCCccccccccc-CCCCCCCcccCCC
Q 004350 356 ARRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA-FSKSPGLGTLSPI 419 (759)
Q Consensus 356 ~r~~~~~q~~~~~~q~~~~~~~~~~Gsp~~ns~p~~f~~~Gsp~~~~~m~~-~~rS~~~G~v~~~ 419 (759)
...++.++...++.++++.+|.. ||.+....++.+ .++++++|||...
T Consensus 97 -~~l~v~nl~~~~t~~~l~~~F~~---------------~G~i~~v~i~~~~~g~~~g~afV~f~ 145 (261)
T 3sde_A 97 -AALTVKNLSPVVSNELLEQAFSQ---------------FGPVEKAVVVVDDRGRATGKGFVEFA 145 (261)
T ss_dssp -SEEEEESCCTTCCHHHHHHHHGG---------------GSCEEEEEEEEETTSCEEEEEEEEES
T ss_pred -CcccccCCCCCCCHHHHHHHHHh---------------cCCeEEEEeeeCCCCCcCcEEEEEeC
Confidence 34678888888888999877544 555666655555 7788999999654
No 111
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=2.3e-14 Score=123.28 Aligned_cols=76 Identities=25% Similarity=0.480 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
..+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346799999999999999999999999999999984 456899999999999999999999999999999999999
Q ss_pred c
Q 004350 266 S 266 (759)
Q Consensus 266 a 266 (759)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 7
No 112
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=123.75 Aligned_cols=79 Identities=27% Similarity=0.404 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~ 270 (759)
..+.++|||+|||.++++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|++..+.|++|.|+|+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 4567999999999999999999999999999999875 7999999999999999999999999999999999998765
Q ss_pred CC
Q 004350 271 NP 272 (759)
Q Consensus 271 ~~ 272 (759)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 113
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=128.19 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=75.2
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
....++|||+|||..+|+++|+++|++||.|..+..++.++|||||+|.+.++|.+|++.|+|..|+|++|+|.+++++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 34567999999999999999999999999998887777889999999999999999999999999999999999998875
Q ss_pred hh
Q 004350 356 AR 357 (759)
Q Consensus 356 ~r 357 (759)
.+
T Consensus 93 ~~ 94 (96)
T 1fjc_A 93 GT 94 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 114
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=1.6e-14 Score=131.01 Aligned_cols=96 Identities=19% Similarity=0.293 Sum_probs=81.2
Q ss_pred cCCceeeEeecCCCCCCCCCccCccceEEeccCCC-CcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHH
Q 004350 256 LRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALR 334 (759)
Q Consensus 256 l~gr~L~V~~a~~k~~~~~~~~~~~tLfV~NLp~~-~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~ 334 (759)
..|.+|.+..+.+.... ......++|||+|||+. +|+++|+++|++||.|..|++ ++|||||+|.+.++|++|++
T Consensus 5 ~~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CCSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHH
T ss_pred CCCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHH
Confidence 34667777766543322 22234579999999999 999999999999999999998 68999999999999999999
Q ss_pred HhCCCeeCCcEEEEEecCCCc
Q 004350 335 ALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 335 ~Lng~~i~G~~L~V~~a~~k~ 355 (759)
.|+|..|+|++|+|+++++..
T Consensus 81 ~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHTTCEETTEECCEEESCCCC
T ss_pred HcCCCEECCeEEEEEECCCCC
Confidence 999999999999999998543
No 115
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=124.61 Aligned_cols=79 Identities=25% Similarity=0.384 Sum_probs=72.7
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
....++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456799999999999999999999999999999985 5699999999999999999999999999999999998865
Q ss_pred hh
Q 004350 356 AR 357 (759)
Q Consensus 356 ~r 357 (759)
..
T Consensus 84 ~~ 85 (92)
T 2dgt_A 84 RT 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 116
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=3e-14 Score=142.63 Aligned_cols=81 Identities=20% Similarity=0.436 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
...++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|.+|++.|++..|.|++|.|.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999884 4577999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004350 267 IPKDNP 272 (759)
Q Consensus 267 ~~k~~~ 272 (759)
.++..+
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876543
No 117
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.8e-14 Score=123.78 Aligned_cols=78 Identities=29% Similarity=0.422 Sum_probs=72.1
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
....++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|+|++|+|.+++++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3456799999999999999999999999999999986 5699999999999999999999999999999999998764
Q ss_pred h
Q 004350 356 A 356 (759)
Q Consensus 356 ~ 356 (759)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 118
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.53 E-value=1.9e-14 Score=125.76 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=72.9
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe---cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i---~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
..++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|+|++|+|+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4679999999999999999999999999999976 3456899999999999999999999999999999999999886
Q ss_pred ch
Q 004350 355 GA 356 (759)
Q Consensus 355 ~~ 356 (759)
..
T Consensus 87 ~~ 88 (92)
T 2dgv_A 87 SG 88 (92)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 119
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.52 E-value=2.5e-14 Score=141.13 Aligned_cols=80 Identities=23% Similarity=0.455 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
...++|||+|||+++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|.+|+.. ++..|.|++|.|.|+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 45689999999999999999999999999999874 467899999999999999999985 799999999999999
Q ss_pred CCCCCC
Q 004350 267 IPKDNP 272 (759)
Q Consensus 267 ~~k~~~ 272 (759)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 887654
No 120
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.4e-14 Score=126.73 Aligned_cols=82 Identities=22% Similarity=0.438 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999985 35679999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 004350 265 FSIPKDN 271 (759)
Q Consensus 265 ~a~~k~~ 271 (759)
|+.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9977654
No 121
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2e-14 Score=126.71 Aligned_cols=81 Identities=20% Similarity=0.431 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE-Ee-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTL-YT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v-~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
.+.++|||+|||+++++++|+++|++||.|..| ++ +++++|||||+|.+.++|++|+..|++..+.|++|.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457999999999999999999999999999877 53 456799999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004350 266 SIPKDNP 272 (759)
Q Consensus 266 a~~k~~~ 272 (759)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 122
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.6e-14 Score=126.51 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
.+.-|||+||++.+|+++|+++|.+||+|..+++. .+||||||+|.++++|++|++.|++..+.|++|+|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 46789999999999999999999999999999864 58999999999999999999999999999999999987
No 123
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.52 E-value=3.6e-14 Score=128.89 Aligned_cols=82 Identities=22% Similarity=0.438 Sum_probs=74.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567799999999999999999999999999999874 4678999999999999999999999999999999999
Q ss_pred eecCCCC
Q 004350 264 HFSIPKD 270 (759)
Q Consensus 264 ~~a~~k~ 270 (759)
+|+.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9997653
No 124
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=7.7e-14 Score=137.78 Aligned_cols=166 Identities=13% Similarity=0.202 Sum_probs=115.5
Q ss_pred ccCCCccChhHHHhcccccc----ccccCCCCcccccc-cccccCCcEEEEecCcchhhccceeeeeccCcccC-ccccc
Q 004350 101 IGSLLPDDENDLLAGLVDDF----DLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGT-GIAHY 174 (759)
Q Consensus 101 i~NlLp~d~d~~~~~vade~----~v~kl~~~~~dlee-dlF~s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~-~~~~~ 174 (759)
++||.+..+++.+..++.++ ++... ....+.+ .+....|-++|+|...+.+..++ .++ ...... .+...
T Consensus 9 V~nLp~~~te~~l~~~F~~~g~i~g~~~~--~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~--g~~~~g~~i~v~ 83 (198)
T 2yh0_A 9 VGNIPFGITEEAMMDFFNAQMRLGGLTQA--PGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFD--GIIFQGQSLKIR 83 (198)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHHTCCSS--SSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGT--TEEETTEEEEEE
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhcccccC--CCCceEEeEecCCCCEEEEEeCCHHHHHHHH-Hhc--CCEEcCceEEEe
Confidence 88999988888888887777 43321 1123334 44455677889999988888877 332 111111 01000
Q ss_pred ccC-----CCCC-----Cc-cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEe
Q 004350 175 PIS-----NGVG-----TV-AGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISY 238 (759)
Q Consensus 175 ~l~-----n~v~-----~~-~g~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF 238 (759)
... .... .. ...........++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f 163 (198)
T 2yh0_A 84 RPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 163 (198)
T ss_dssp CCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred CCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEE
Confidence 000 0000 00 0001122356799999999999999999999999999999874 566799999999
Q ss_pred cCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 004350 239 YDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (759)
Q Consensus 239 ~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~ 271 (759)
.+.++|.+|++.|++..|.|++|.|.|+.++..
T Consensus 164 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 164 VDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999987643
No 125
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-14 Score=127.36 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=72.8
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEE-Eec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-RET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v-~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
..++|||+|||..+|+++|+++|++||.|..| ++. +.++|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999888 763 446899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887544
No 126
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.7e-14 Score=124.59 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+..|++..+.|++|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4556799999999999999999999999999999884 36789999999999999999999999999999999999
Q ss_pred ecC
Q 004350 265 FSI 267 (759)
Q Consensus 265 ~a~ 267 (759)
|+.
T Consensus 91 ~a~ 93 (95)
T 2cqc_A 91 GPS 93 (95)
T ss_dssp CCS
T ss_pred ecC
Confidence 985
No 127
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.52 E-value=3.3e-14 Score=137.25 Aligned_cols=153 Identities=14% Similarity=0.210 Sum_probs=111.2
Q ss_pred ccCCCccChhHHHhcccccc----ccccCCCCcccccc-cccccCCcEEEEecCcchhhccceeeeeccCcccCcccccc
Q 004350 101 IGSLLPDDENDLLAGLVDDF----DLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYP 175 (759)
Q Consensus 101 i~NlLp~d~d~~~~~vade~----~v~kl~~~~~dlee-dlF~s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~~~~~~~ 175 (759)
++||.+..+++.+..++.++ ++... ....+.+ .+..+.|-+.|+|...+.+..++ .++ ..........
T Consensus 9 V~nLp~~~t~~~l~~~F~~~g~~~g~~~~--~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~--~~~~~g~~i~-- 81 (172)
T 2g4b_A 9 VGNIPFGITEEAMMDFFNAQMRLGGLTQA--PGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFD--GIIFQGQSLK-- 81 (172)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHTTCCSS--SSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGT--TCEETTEECE--
T ss_pred EcCCCcccCHHHHHHHHHHHhhhcccccC--CCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhC--CcEecCceee--
Confidence 88999988888888887777 43321 1113333 44445667888888888887776 322 1111110000
Q ss_pred cCCCCCCccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHH
Q 004350 176 ISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRA 250 (759)
Q Consensus 176 l~n~v~~~~g~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~ 250 (759)
+. ...........++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.
T Consensus 82 v~------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 82 IR------RPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp EE------CCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred ec------CCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 00 0111122345789999999999999999999999999999884 567799999999999999999999
Q ss_pred ccccccCCceeeEeec
Q 004350 251 LQNKPLRRRKLDIHFS 266 (759)
Q Consensus 251 L~g~~l~gr~L~V~~a 266 (759)
|++..+.|++|.|+||
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999999999999997
No 128
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.52 E-value=2.2e-14 Score=130.42 Aligned_cols=80 Identities=21% Similarity=0.417 Sum_probs=72.9
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
.....++|||+|||.++|+++|+++|++||.|+.|++. +|||||+|.+.++|++|++.|||..|+|+.|+|.+++++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 44567899999999999999999999999999999986 899999999999999999999999999999999999887
Q ss_pred chh
Q 004350 355 GAR 357 (759)
Q Consensus 355 ~~r 357 (759)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 544
No 129
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.7e-14 Score=124.50 Aligned_cols=78 Identities=24% Similarity=0.426 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4556799999999999999999999999999999985 35678999999999999999999999999999999999
Q ss_pred ecC
Q 004350 265 FSI 267 (759)
Q Consensus 265 ~a~ 267 (759)
|+.
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 130
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.8e-14 Score=127.33 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
..+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 456799999999999999999999999999999884 356899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004350 266 SIPKDNP 272 (759)
Q Consensus 266 a~~k~~~ 272 (759)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 131
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.52 E-value=4.2e-14 Score=127.02 Aligned_cols=82 Identities=24% Similarity=0.473 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHcccccc---CCcee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRKL 261 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l---~gr~L 261 (759)
...+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+ .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 4567899999999999999999999999999999984 366899999999999999999999999987 89999
Q ss_pred eEeecCCCCC
Q 004350 262 DIHFSIPKDN 271 (759)
Q Consensus 262 ~V~~a~~k~~ 271 (759)
.|+|+.++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.8e-14 Score=128.44 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=71.7
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
..++|||+|||.++|+++|+++|++||.|++|++. +++|||||+|.+.++|.+|++.|||..|+|++|+|.+++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45789999999999999999999999999999986 67899999999999999999999999999999999999874
No 133
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=133.53 Aligned_cols=81 Identities=15% Similarity=0.281 Sum_probs=73.6
Q ss_pred CccceEEeccCCCCcHHHHH----HHhhccCCeEEEEe--cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 278 NQGTLVVFNLDASVSNDDLR----QIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr----~~Fs~fG~I~~v~i--~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
..++|||+|||+.+++++|+ ++|++||.|.+|.+ +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 45789999999999999876 69999999999987 3578999999999999999999999999999999999999
Q ss_pred CCCchhh
Q 004350 352 RPGGARR 358 (759)
Q Consensus 352 ~~k~~r~ 358 (759)
+++....
T Consensus 108 ~~~~~~~ 114 (127)
T 2a3j_A 108 ETPQSQV 114 (127)
T ss_dssp CCCCHHH
T ss_pred cCcchhc
Confidence 9876554
No 134
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.52 E-value=2.5e-14 Score=128.49 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=74.4
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCee---CCcEE
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDI---NGKRI 346 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i---~G~~L 346 (759)
.....++|||+|||.++|+++|+++|++||.|..|++. ++++|||||+|.+.++|.+|++.||+..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34456799999999999999999999999999999863 45789999999999999999999999988 89999
Q ss_pred EEEecCCCchh
Q 004350 347 KLEPSRPGGAR 357 (759)
Q Consensus 347 ~V~~a~~k~~r 357 (759)
+|++++++..+
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999876543
No 135
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.1e-14 Score=128.93 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=70.6
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEecCCCc
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRS--DINGKRIKLEPSRPGG 355 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~--~i~G~~L~V~~a~~k~ 355 (759)
..++|||+|||+++|+++|+++|++||.|+.|.+.. .+|||||+|.+.++|.+|++.|++. .|+|++|+|.+++++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 467999999999999999999999999999999754 4899999999999999999998765 5999999999998765
Q ss_pred h
Q 004350 356 A 356 (759)
Q Consensus 356 ~ 356 (759)
.
T Consensus 93 ~ 93 (104)
T 1wex_A 93 I 93 (104)
T ss_dssp C
T ss_pred c
Confidence 4
No 136
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.52 E-value=3e-14 Score=134.33 Aligned_cols=82 Identities=28% Similarity=0.420 Sum_probs=74.5
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
....++|||+|||.++|+++|+++|++||.|++|++ +++++|||||+|.+.++|.+|++.|||..|+|++|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999976 345689999999999999999999999999999999999
Q ss_pred cCCCchh
Q 004350 351 SRPGGAR 357 (759)
Q Consensus 351 a~~k~~r 357 (759)
++++..+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9987554
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=132.13 Aligned_cols=78 Identities=13% Similarity=0.267 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
.+..++|||+|||+++++++|+++|++||.|..|.+. +++|||||+|.+.++|++|++.|++..|.|++|.|+|+...
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4457899999999999999999999999999999875 68999999999999999999999999999999999998643
No 138
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.52 E-value=3.1e-14 Score=136.10 Aligned_cols=78 Identities=27% Similarity=0.445 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||.++++++|+++|++||.|..+.+ +++++|||||+|.+.++|.+|++.|++..+.|++|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 4556789999999999999999999999999999874 46789999999999999999999999999999999999
Q ss_pred ecC
Q 004350 265 FSI 267 (759)
Q Consensus 265 ~a~ 267 (759)
|+.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 139
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.52 E-value=4.2e-14 Score=126.78 Aligned_cols=78 Identities=24% Similarity=0.490 Sum_probs=72.7
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCchh
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 357 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~r 357 (759)
..++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..|+|+.|+|.+++++..+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 45789999999999999999999999999999985 679999999999999999999999999999999999887654
Q ss_pred h
Q 004350 358 R 358 (759)
Q Consensus 358 ~ 358 (759)
+
T Consensus 87 ~ 87 (103)
T 2dgu_A 87 R 87 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 140
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=5.1e-14 Score=125.37 Aligned_cols=76 Identities=29% Similarity=0.412 Sum_probs=71.2
Q ss_pred cCccceEEeccCC-CCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 277 VNQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 277 ~~~~tLfV~NLp~-~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
...++|||+|||. ++|+++|+++|++||.|..|++ ++|||||+|.+.++|.+|++.|||..++|++|+|++++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 3567999999998 9999999999999999999998 38999999999999999999999999999999999998753
No 141
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6.9e-14 Score=124.31 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=71.6
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhcc--CCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~f--G~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
...++|||+|||+.+|+++|+++|++| |.|..|++. +|||||+|.+.++|++|++.|||..|+|++|+|.+++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 356799999999999999999999999 999999874 789999999999999999999999999999999999886
Q ss_pred ch
Q 004350 355 GA 356 (759)
Q Consensus 355 ~~ 356 (759)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 142
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=132.24 Aligned_cols=80 Identities=23% Similarity=0.429 Sum_probs=72.7
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||..+|+++|+++|+.||.|+.|++. +.++|||||+|.+.++|++|| .|||..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 345799999999999999999999999999999874 567899999999999999999 99999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 765443
No 143
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.52 E-value=8.6e-15 Score=131.02 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=71.2
Q ss_pred ccceEEeccCC------CCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCC-cEE
Q 004350 279 QGTLVVFNLDA------SVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDING-KRI 346 (759)
Q Consensus 279 ~~tLfV~NLp~------~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G-~~L 346 (759)
.++|||+|||. ++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|||..|+| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57899999999 9999999999999999999986 36789999999999999999999999999999 999
Q ss_pred EEEecCCC
Q 004350 347 KLEPSRPG 354 (759)
Q Consensus 347 ~V~~a~~k 354 (759)
+|.++.++
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 144
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.6e-14 Score=122.19 Aligned_cols=77 Identities=22% Similarity=0.422 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHc-cccccCCceeeEeec
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFS 266 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L-~g~~l~gr~L~V~~a 266 (759)
......++|||+|||.++++++|+++|++||.|..|.+. +++|||||+|.+.++|++|++.| ++..+.|++|.|+|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 345667999999999999999999999999999999875 57999999999999999999999 999999999999997
No 145
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=129.11 Aligned_cols=77 Identities=17% Similarity=0.348 Sum_probs=68.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC--eEEEE-----eCCCcceEEEEEecCHHHHHHHHHHcccc----ccCCc
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGD--IRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNK----PLRRR 259 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~--I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~----~l~gr 259 (759)
...-.||||+|||+++|+++|+++|++||. |..|+ .++++||||||+|.+.++|++|++.|++. .+.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445689999999999999999999999995 45665 25789999999999999999999999997 48999
Q ss_pred eeeEeecC
Q 004350 260 KLDIHFSI 267 (759)
Q Consensus 260 ~L~V~~a~ 267 (759)
+|.|+||.
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99999985
No 146
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.7e-14 Score=128.44 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=73.8
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
...++|||+|||..+|+++|+++|++||.|..|++... +|||||+|.+.++|.+|++.|+|..|+|++|+|.+++++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34679999999999999999999999999999998644 89999999999999999999999999999999999988764
Q ss_pred h
Q 004350 357 R 357 (759)
Q Consensus 357 r 357 (759)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 147
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.5e-14 Score=125.80 Aligned_cols=83 Identities=22% Similarity=0.376 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccc-cCCceeeE
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQ-YGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRRRKLDI 263 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~-fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~-l~gr~L~V 263 (759)
...+.++|||+|||+++|+++|+++|++ ||.|..|.+ +++++|||||+|.+.++|++|++.|++.. +.|++|.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 3456799999999999999999999999 999999885 56789999999999999999999999999 99999999
Q ss_pred eecCCCCCC
Q 004350 264 HFSIPKDNP 272 (759)
Q Consensus 264 ~~a~~k~~~ 272 (759)
+|+.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999776543
No 148
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.3e-14 Score=126.39 Aligned_cols=80 Identities=30% Similarity=0.505 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+. +.+|||||+|.+.++|++|++.|++..|.|++|.|+|+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 34567999999999999999999999999999999875 67999999999999999999999999999999999999765
Q ss_pred C
Q 004350 270 D 270 (759)
Q Consensus 270 ~ 270 (759)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 149
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2e-14 Score=133.37 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=71.6
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCC--CeeCCcEEEEEecCCCc
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKLEPSRPGG 355 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng--~~i~G~~L~V~~a~~k~ 355 (759)
..++|||+|||+++|+++|+++|++||.|++|++.. .+|||||+|.+.++|.+|++.|++ ..|.|++|+|.+++++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 467899999999999999999999999999999853 479999999999999999999974 68999999999998765
Q ss_pred hh
Q 004350 356 AR 357 (759)
Q Consensus 356 ~r 357 (759)
.+
T Consensus 109 ~~ 110 (119)
T 2ad9_A 109 LK 110 (119)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 150
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=126.79 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=71.1
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
...++|||+|||+.+|+++|+++|++||.|....++++++|||||+|.+.++|++|++.|||..|+|++|+|++++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3467999999999999999999999999996323456789999999999999999999999999999999999998864
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.52 E-value=2.6e-14 Score=137.25 Aligned_cols=77 Identities=23% Similarity=0.413 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCC--ceee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLD 262 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g--r~L~ 262 (759)
.....++|||+|||.++++++|+++|++||.|..+.+ +++++|||||+|.+.++|.+|++.|++..+.| ++|.
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 3456789999999999999999999999999998874 56678999999999999999999999999977 9999
Q ss_pred Eeec
Q 004350 263 IHFS 266 (759)
Q Consensus 263 V~~a 266 (759)
|.||
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 152
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-14 Score=129.78 Aligned_cols=81 Identities=22% Similarity=0.423 Sum_probs=73.6
Q ss_pred CCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec---CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 274 EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 274 ~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~---~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
......++|||+|||.++|+++|+++|++||.|+.|++. +.++|||||+|.+.++|++|++.|+|..|+|++|+|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344466899999999999999999999999999999874 34589999999999999999999999999999999999
Q ss_pred cCCC
Q 004350 351 SRPG 354 (759)
Q Consensus 351 a~~k 354 (759)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9876
No 153
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5e-14 Score=123.55 Aligned_cols=81 Identities=22% Similarity=0.396 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
......++|||+|||+++++++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|++..+.|++|.|+|+.+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 345668999999999999999999999999999999865 56999999999999999999999999999999999987
Q ss_pred CCCC
Q 004350 269 KDNP 272 (759)
Q Consensus 269 k~~~ 272 (759)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 154
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.1e-14 Score=124.71 Aligned_cols=79 Identities=28% Similarity=0.494 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccC--CceeeEeecCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIP 268 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~--gr~L~V~~a~~ 268 (759)
..+.++|||+|||+++++++|+++|++||.|..|.+. +.+|||||+|.+.++|++|++.|++..+. |++|.|+|+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV-KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC-SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-CCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 4567999999999999999999999999999999875 34899999999999999999999999999 99999999987
Q ss_pred CC
Q 004350 269 KD 270 (759)
Q Consensus 269 k~ 270 (759)
+.
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 155
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.51 E-value=1.3e-14 Score=127.09 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=65.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG--~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
.+|||+|||+++|+++|+++|++|| .|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 8888763 67899999999999999999999999999999999999997
Q ss_pred CCCC
Q 004350 268 PKDN 271 (759)
Q Consensus 268 ~k~~ 271 (759)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 156
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4e-14 Score=126.99 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=72.3
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec------CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~------~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
....+|||+|||+++|+++|+++|++|| |..|++. ++++|||||+|.+.++|++|| .|++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3457999999999999999999999999 9999873 567899999999999999999 8999999999999999
Q ss_pred cCCCchh
Q 004350 351 SRPGGAR 357 (759)
Q Consensus 351 a~~k~~r 357 (759)
++++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887654
No 157
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=2.5e-14 Score=126.25 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
...+.++|||+|||+++++++|+++|++||.|..+..+++++|||||+|.+.++|++|+..|++..+.|++|.|+|+.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 44567999999999999999999999999999888667889999999999999999999999999999999999999765
Q ss_pred C
Q 004350 270 D 270 (759)
Q Consensus 270 ~ 270 (759)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.51 E-value=3.8e-14 Score=136.42 Aligned_cols=83 Identities=28% Similarity=0.456 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
.....++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3455789999999999999999999999999999984 56799999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 004350 265 FSIPKDNP 272 (759)
Q Consensus 265 ~a~~k~~~ 272 (759)
|+.++...
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99876543
No 159
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.2e-14 Score=128.79 Aligned_cols=80 Identities=14% Similarity=0.321 Sum_probs=72.6
Q ss_pred ccCccceEEeccCCCCcHHHHH---HHhhccCCeEEEEecC--------CCCceEEEEECCHHHHHHHHHHhCCCeeCCc
Q 004350 276 DVNQGTLVVFNLDASVSNDDLR---QIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALRALNRSDINGK 344 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr---~~Fs~fG~I~~v~i~~--------~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~ 344 (759)
....++|||+|||+++|+++|+ ++|++||.|..|++.. +++|||||+|.+.++|++|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 9999999999998732 3458999999999999999999999999999
Q ss_pred EEEEEecCCCc
Q 004350 345 RIKLEPSRPGG 355 (759)
Q Consensus 345 ~L~V~~a~~k~ 355 (759)
+|+|.+++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998874
No 160
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=1.4e-14 Score=140.59 Aligned_cols=155 Identities=20% Similarity=0.244 Sum_probs=110.5
Q ss_pred ccCCCccChhHHHhccccccccccCCCCcccccc-cccccCCcEEEEecCcchhhccceeeeeccCcccC-cccccccCC
Q 004350 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGT-GIAHYPISN 178 (759)
Q Consensus 101 i~NlLp~d~d~~~~~vade~~v~kl~~~~~dlee-dlF~s~G~v~V~~d~~esa~~g~~kv~f~~~~~~~-~~~~~~l~n 178 (759)
++||.+..+++.+..++.+++...- ..+.+ ..-...|-++|+|...+.+..++. ++ ...... .+. +.
T Consensus 18 V~nLp~~~t~~~l~~~f~~~g~~~~----~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~--g~~~~g~~l~---v~- 86 (175)
T 1fje_B 18 IGNLNPNKSVAELKVAISELFAKND----LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT--GLKVFGNEIK---LE- 86 (175)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHT----CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG--GEEETTEEEE---EE-
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcce----EEEEECCCCccccEEEEEECCHHHHHHHHh-cC--CCEeCCeEEE---Ee-
Confidence 8999998777766666555554321 01122 222344567888888888877773 32 111111 110 00
Q ss_pred CCCCccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCC
Q 004350 179 GVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR 258 (759)
Q Consensus 179 ~v~~~~g~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g 258 (759)
.............++|||+|||.++++++|+++|++||.|..+..+++++|||||+|.+.++|.+|++.|++..+.|
T Consensus 87 ---~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 87 ---KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp ---CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred ---cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 11111223345678999999999999999999999999999885567899999999999999999999999999999
Q ss_pred ceeeEeecCCC
Q 004350 259 RKLDIHFSIPK 269 (759)
Q Consensus 259 r~L~V~~a~~k 269 (759)
++|.|.|+.++
T Consensus 164 ~~i~v~~a~~k 174 (175)
T 1fje_B 164 RSVSLYYTGEK 174 (175)
T ss_dssp EEEEEEECSSC
T ss_pred eEEEEEecCCC
Confidence 99999999765
No 161
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.5e-14 Score=126.10 Aligned_cols=81 Identities=16% Similarity=0.365 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC------CCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~------gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
...+.++|||+|||+++++++|+++|++|| |..|.+. ++++|||||+|.+.++|++|+ .|++..|.|++|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445679999999999999999999999999 9999842 678999999999999999999 89999999999999
Q ss_pred eecCCCCCC
Q 004350 264 HFSIPKDNP 272 (759)
Q Consensus 264 ~~a~~k~~~ 272 (759)
+|+.++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 162
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.51 E-value=4.2e-14 Score=125.73 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=70.2
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEE--------EEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeC
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~--------v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~ 342 (759)
.....+|||+|||.++|+++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|||..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345679999999999999999999999999998 765 3556899999999999999999999999999
Q ss_pred CcEEEEEecC
Q 004350 343 GKRIKLEPSR 352 (759)
Q Consensus 343 G~~L~V~~a~ 352 (759)
|++|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999984
No 163
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.4e-14 Score=126.33 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=73.0
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
...++|||+|||..+|+++|+++|++||.|+.|++. +.+|||||+|.+.++|.+|++.|+|..|+|++|+|.+++++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 356799999999999999999999999999999985 4589999999999999999999999999999999999987643
No 164
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.4e-14 Score=127.37 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=71.6
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCC-----cEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDING-----KRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G-----~~L~V~~a~ 352 (759)
...+|||+|||+++|+++|+++|++||.|+.|++... |||||+|.+.++|++||+.|||..|+| +.|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4578999999999999999999999999999998644 999999999999999999999999999 999999998
Q ss_pred CCch
Q 004350 353 PGGA 356 (759)
Q Consensus 353 ~k~~ 356 (759)
++..
T Consensus 92 ~~~~ 95 (108)
T 1x4c_A 92 PRSP 95 (108)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8643
No 165
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2e-14 Score=132.05 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccc--cccCCceeeEeec
Q 004350 190 GEHPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFS 266 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~-vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g--~~l~gr~L~V~~a 266 (759)
...++++|||+|||++ +++++|+++|++||+|..|++. ++||||||+|.+.++|++|++.|++ ..|.|++|+|.|+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 3567899999999998 9999999999999999999874 6899999999999999999998875 4599999999999
Q ss_pred CCCCC
Q 004350 267 IPKDN 271 (759)
Q Consensus 267 ~~k~~ 271 (759)
..+..
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 76543
No 166
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.51 E-value=3.8e-14 Score=129.90 Aligned_cols=77 Identities=21% Similarity=0.403 Sum_probs=70.3
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
....++|||+|||.++|+++|+++|++||.|+.|++. ++++|||||+|.+.++|++|++.|||..|+|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999873 45689999999999999999999999999999999999
Q ss_pred cC
Q 004350 351 SR 352 (759)
Q Consensus 351 a~ 352 (759)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 167
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.5e-14 Score=121.61 Aligned_cols=76 Identities=32% Similarity=0.480 Sum_probs=70.4
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHh-CCCeeCCcEEEEEecC
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL-NRSDINGKRIKLEPSR 352 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~L-ng~~i~G~~L~V~~a~ 352 (759)
+...++|||+|||..+|+++|+++|++||.|..|++.. ++|||||+|.+.++|.+|++.| +|..++|++|+|++++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567999999999999999999999999999999853 5899999999999999999999 9999999999999985
No 168
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.51 E-value=4.4e-14 Score=132.65 Aligned_cols=79 Identities=27% Similarity=0.441 Sum_probs=73.1
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||.++|+++|+++|++||.|+.|++. ++++|||||+|.+.++|++||+.|+|..|+|++|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356799999999999999999999999999999873 567899999999999999999999999999999999999
Q ss_pred CCCc
Q 004350 352 RPGG 355 (759)
Q Consensus 352 ~~k~ 355 (759)
+++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8764
No 169
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=124.42 Aligned_cols=79 Identities=23% Similarity=0.308 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
....+.++|||+|||+++++++|+++|++||.|..|.+ .++++|||||+|.+.++|++|++.|++..+.|++|.|+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34566799999999999999999999999999999884 35679999999999999999999999999999999999
Q ss_pred ecC
Q 004350 265 FSI 267 (759)
Q Consensus 265 ~a~ 267 (759)
|+.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 984
No 170
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.9e-14 Score=128.83 Aligned_cols=82 Identities=27% Similarity=0.379 Sum_probs=73.7
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeE--------EEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeC
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVK--------EIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~--------~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~ 342 (759)
....++|||+|||.++|+++|+++|++||.|. .|++ +++++|||||+|.+.++|++||+.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999999999999999999998 5765 3466899999999999999999999999999
Q ss_pred CcEEEEEecCCCchh
Q 004350 343 GKRIKLEPSRPGGAR 357 (759)
Q Consensus 343 G~~L~V~~a~~k~~r 357 (759)
|++|+|.+++++..+
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999987654
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=7.3e-14 Score=134.82 Aligned_cols=77 Identities=19% Similarity=0.380 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccC---CceeeE
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR---RRKLDI 263 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~---gr~L~V 263 (759)
....++|||+|||+++|+++|+++|++||.|..|.+ .++++|||||+|.+.++|++|++.|++..+. +++|.|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 346789999999999999999999999999999874 4567999999999999999999999998776 499999
Q ss_pred eecC
Q 004350 264 HFSI 267 (759)
Q Consensus 264 ~~a~ 267 (759)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 172
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=3.7e-14 Score=130.45 Aligned_cols=79 Identities=27% Similarity=0.450 Sum_probs=72.7
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
..++|||+|||.++|+++|+++|++||.|+.|++ +++++|||||+|.+.++|++|++.|||..|+|++|+|.++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4578999999999999999999999999999987 455689999999999999999999999999999999999987
Q ss_pred Cch
Q 004350 354 GGA 356 (759)
Q Consensus 354 k~~ 356 (759)
...
T Consensus 86 ~~~ 88 (116)
T 2fy1_A 86 PSF 88 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 173
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.50 E-value=5.2e-14 Score=121.71 Aligned_cols=78 Identities=12% Similarity=0.306 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC------CCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~------gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
..++|||+|||.++++++|+++|++||.|..|.+. ++++|||||+|.+.++|++|+..|++..+.|++|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999841 228999999999999999999999999999999999999
Q ss_pred CCCC
Q 004350 267 IPKD 270 (759)
Q Consensus 267 ~~k~ 270 (759)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 174
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=6.5e-14 Score=128.83 Aligned_cols=81 Identities=20% Similarity=0.401 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
....++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345789999999999999999999999999998874 4678899999999999999999999999999999999999
Q ss_pred CCCCC
Q 004350 267 IPKDN 271 (759)
Q Consensus 267 ~~k~~ 271 (759)
.++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76653
No 175
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.8e-14 Score=125.68 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~ 270 (759)
....++|||+|||+++++++|+++|++||.|....++++++|||||+|.+.++|++|++.|++..|.|++|.|+|+.++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 44578999999999999999999999999986333456889999999999999999999999999999999999997654
No 176
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.2e-14 Score=127.40 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=74.2
Q ss_pred CccceEEeccCCCCcHHHHHHHhhc-cCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCe-eCCcEEEEEec
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGA-YGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSD-INGKRIKLEPS 351 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~-fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~-i~G~~L~V~~a 351 (759)
...+|||+|||.++|+++|+++|++ ||.|..|++ ++.++|||||+|.+.++|.+|++.|++.. |+|+.|+|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 4579999999999999999999999 999999986 45678999999999999999999999999 99999999999
Q ss_pred CCCchhh
Q 004350 352 RPGGARR 358 (759)
Q Consensus 352 ~~k~~r~ 358 (759)
+++..++
T Consensus 88 ~~~~~~~ 94 (104)
T 2dhg_A 88 IPKASRV 94 (104)
T ss_dssp CCCCSCC
T ss_pred cCCCcCC
Confidence 8876543
No 177
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.50 E-value=4.9e-14 Score=122.30 Aligned_cols=76 Identities=28% Similarity=0.483 Sum_probs=70.3
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|+ .|+|..|+|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999976 4566899999999999999999 899999999999999998
Q ss_pred CC
Q 004350 353 PG 354 (759)
Q Consensus 353 ~k 354 (759)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 178
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=6.3e-14 Score=131.53 Aligned_cols=80 Identities=26% Similarity=0.393 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEe--CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 191 EHPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr----~lFs~fG~I~~v~~--~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4567899999999999999876 69999999999885 46889999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004350 265 FSIPKD 270 (759)
Q Consensus 265 ~a~~k~ 270 (759)
|+..+.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997653
No 179
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=124.95 Aligned_cols=81 Identities=11% Similarity=0.329 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE-EEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCce----
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIR-TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK---- 260 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~-~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~---- 260 (759)
..+.++|||+|||+++++++|+++|++||.|. .|.+ +++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44679999999999999999999999999998 8773 4678999999999999999999999999999999
Q ss_pred eeEeecCCCCC
Q 004350 261 LDIHFSIPKDN 271 (759)
Q Consensus 261 L~V~~a~~k~~ 271 (759)
|.|.|+.+...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999976543
No 180
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=125.55 Aligned_cols=82 Identities=18% Similarity=0.362 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
...+.++|||+|||+++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|+..|++..|.|++|.|+|+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 455689999999999999999999999999995443 2567899999999999999999999999999999999999987
Q ss_pred CCC
Q 004350 269 KDN 271 (759)
Q Consensus 269 k~~ 271 (759)
+..
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 181
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=126.57 Aligned_cols=81 Identities=30% Similarity=0.450 Sum_probs=72.2
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
....++|||+|||.++|+++|+++|++||.|..++. +++++|||||+|.+.++|++|++.||+..|.|+.|+|++++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 345689999999999999999999999999854433 5667999999999999999999999999999999999999886
Q ss_pred ch
Q 004350 355 GA 356 (759)
Q Consensus 355 ~~ 356 (759)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 182
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.50 E-value=4.2e-14 Score=137.20 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=72.0
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccC--CeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG--~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
..++|||+|||+++|+++|+++|++|| .|.+|++ +++++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 346899999999999999999999999 9999986 567799999999999999999999999999999999999
Q ss_pred cCCCch
Q 004350 351 SRPGGA 356 (759)
Q Consensus 351 a~~k~~ 356 (759)
+.++..
T Consensus 134 a~~~~~ 139 (156)
T 3n9u_C 134 ATRQNL 139 (156)
T ss_dssp CCHHHH
T ss_pred cCCCcc
Confidence 987543
No 183
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.50 E-value=5.2e-14 Score=127.42 Aligned_cols=81 Identities=20% Similarity=0.398 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+..|++..|.|++|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999984 46679999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004350 265 FSIPKD 270 (759)
Q Consensus 265 ~a~~k~ 270 (759)
|+.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997654
No 184
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.50 E-value=5.4e-14 Score=126.83 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=71.6
Q ss_pred ccCccceEEeccCCCC------cHHHHHHHhhccCCeEEEEec---CCCCceEEEEECCHHHHHHHHHHhCCCeeCCc-E
Q 004350 276 DVNQGTLVVFNLDASV------SNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGK-R 345 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~------TeedLr~~Fs~fG~I~~v~i~---~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~-~ 345 (759)
....++|||+|||+.+ |+++|+++|++||.|..|++. ++++|||||+|.+.++|.+|++.|||..|+|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3346789999999999 789999999999999999874 46789999999999999999999999999998 9
Q ss_pred EEEEecCCC
Q 004350 346 IKLEPSRPG 354 (759)
Q Consensus 346 L~V~~a~~k 354 (759)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999754
No 185
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8e-14 Score=125.82 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeC------CCcceEEEEEecCHHHHHHHHHHcc--ccccCCceee
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYTA------CKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLD 262 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~-I~~v~~~------gksrGfAFVeF~~~e~A~kAi~~L~--g~~l~gr~L~ 262 (759)
.+.++|||+|||+++++++|+++|++||. |..|.+. ++++|||||+|.+.++|++|++.|+ +..+.|++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999853 4789999999999999999999996 5899999999
Q ss_pred EeecCCCCCCC
Q 004350 263 IHFSIPKDNPS 273 (759)
Q Consensus 263 V~~a~~k~~~~ 273 (759)
|+|+.++..+.
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99998876543
No 186
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.3e-14 Score=127.14 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=73.9
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..++|||+|||..+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4579999999999999999999999999999976 34568999999999999999999999999999999999999
Q ss_pred CCchhh
Q 004350 353 PGGARR 358 (759)
Q Consensus 353 ~k~~r~ 358 (759)
++..+.
T Consensus 87 ~~~~~~ 92 (104)
T 1p1t_A 87 SEKNKE 92 (104)
T ss_dssp CTTHHH
T ss_pred Cccchh
Confidence 876554
No 187
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.50 E-value=4.1e-14 Score=131.20 Aligned_cols=81 Identities=26% Similarity=0.403 Sum_probs=73.9
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||..+|+++|+++|++||.|..|.+ ++.++|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34679999999999999999999999999999987 4556899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876544
No 188
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.1e-14 Score=129.17 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=71.2
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
..++|||+|||+++|+++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|||..|+|+.|+|.|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 45789999999999999999999999999999985 57899999999999999999999999999999999999764
No 189
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.4e-14 Score=128.16 Aligned_cols=81 Identities=25% Similarity=0.352 Sum_probs=72.9
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
.+...++|||+|||..+|+++|+++|++||.|+.|++. ++++|||||+|.+.++|++||+.|++ .|+|++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34466899999999999999999999999999999873 45689999999999999999999998 8999999999
Q ss_pred ecCCCch
Q 004350 350 PSRPGGA 356 (759)
Q Consensus 350 ~a~~k~~ 356 (759)
+++++..
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9976543
No 190
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.3e-14 Score=126.72 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
...++|||+|||.++++++|+++|++||.|..|++. +++|||||+|.+.++|++|+..|++..+.|++|.|+|+.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 456899999999999999999999999999999875 78999999999999999999999999999999999998653
No 191
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8.7e-14 Score=126.58 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=72.1
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
...++|||+|||..+|+++|+++|++||.|+.|++. ++++|||||+|.+.++|++|++.||+..|+|++|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 346799999999999999999999999999999763 3457899999999999999999999999999999999997
Q ss_pred CCch
Q 004350 353 PGGA 356 (759)
Q Consensus 353 ~k~~ 356 (759)
....
T Consensus 93 ~~~~ 96 (114)
T 2do0_A 93 RALP 96 (114)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 192
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-14 Score=127.90 Aligned_cols=76 Identities=29% Similarity=0.413 Sum_probs=71.6
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
++|||+|||.++|+++|+++|++||.|+.|++...++|||||+|.+.++|++|++.|+|..++|+.|+|++++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 4799999999999999999999999999999865578999999999999999999999999999999999998765
No 193
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.49 E-value=4.5e-14 Score=124.66 Aligned_cols=80 Identities=23% Similarity=0.433 Sum_probs=73.5
Q ss_pred CccceEEeccCCCCcHHHHH----HHhhccCCeEEEEec--CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 278 NQGTLVVFNLDASVSNDDLR----QIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr----~~Fs~fG~I~~v~i~--~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
..++|||+|||.++|+++|+ ++|++||.|..|++. +.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999 999999999999874 356899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++...
T Consensus 87 ~~~~~~ 92 (97)
T 1nu4_A 87 KTDSDI 92 (97)
T ss_dssp SSCCTH
T ss_pred cCCCcc
Confidence 987654
No 194
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=126.69 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.+++ .|.|++|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 34567899999999999999999999999999999984 466899999999999999999999998 899999999
Q ss_pred eecCCCCCC
Q 004350 264 HFSIPKDNP 272 (759)
Q Consensus 264 ~~a~~k~~~ 272 (759)
+|+.++..+
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999765443
No 195
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.9e-14 Score=124.74 Aligned_cols=84 Identities=21% Similarity=0.410 Sum_probs=74.1
Q ss_pred CCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe--cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 274 EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 274 ~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i--~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
......++|||+|||.++|+++|+++|+.|+.|..+.. +++++|||||+|.+.++|++||+.|||..|+|++|+|.++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 34456789999999999999999999999987766653 5667899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 987654
No 196
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.7e-14 Score=125.34 Aligned_cols=78 Identities=27% Similarity=0.348 Sum_probs=70.6
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCC-eEEEEecCCCCceEEEEECCHHHHHHHHHHhCC-CeeCCcEEEEEecCCCc
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGE-VKEIRETPHKRHHKFIEFYDVRAAEAALRALNR-SDINGKRIKLEPSRPGG 355 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~-I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng-~~i~G~~L~V~~a~~k~ 355 (759)
..++|||+|||.++|+++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.||| ..|+|++|+|.+++++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 4578999999999999999999999999 666665 3689999999999999999999999 99999999999998875
Q ss_pred hh
Q 004350 356 AR 357 (759)
Q Consensus 356 ~r 357 (759)
.+
T Consensus 85 ~~ 86 (93)
T 2cqh_A 85 LR 86 (93)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 197
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.49 E-value=6.2e-14 Score=131.59 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999985 3678999999999999999999999999999999999
Q ss_pred eecCCCC
Q 004350 264 HFSIPKD 270 (759)
Q Consensus 264 ~~a~~k~ 270 (759)
+|+.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997654
No 198
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=124.64 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4456899999999999999999999999999998874 356799999999999999999999999999999999999
Q ss_pred cCCC
Q 004350 266 SIPK 269 (759)
Q Consensus 266 a~~k 269 (759)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8654
No 199
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.49 E-value=2e-14 Score=128.63 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCC-ce
Q 004350 193 PSRTLFVRNINS------NVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR-RK 260 (759)
Q Consensus 193 ~~rtLfVgNLP~------~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g-r~ 260 (759)
.+++|||+|||+ ++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999999984 37899999999999999999999999999999 99
Q ss_pred eeEeecCCC
Q 004350 261 LDIHFSIPK 269 (759)
Q Consensus 261 L~V~~a~~k 269 (759)
|.|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998653
No 200
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.8e-14 Score=127.56 Aligned_cols=79 Identities=24% Similarity=0.436 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
.+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|+|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45689999999999999999999999999988874 4677999999999999999999999999999999999999
Q ss_pred CCCC
Q 004350 267 IPKD 270 (759)
Q Consensus 267 ~~k~ 270 (759)
.++.
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7654
No 201
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=1.1e-13 Score=123.93 Aligned_cols=79 Identities=25% Similarity=0.476 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~ 270 (759)
..+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|++..|.|++|.|+|+.++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 3457999999999999999999999999999999864 6799999999999999999999999999999999998765
Q ss_pred CC
Q 004350 271 NP 272 (759)
Q Consensus 271 ~~ 272 (759)
..
T Consensus 85 ~~ 86 (103)
T 2dgu_A 85 QK 86 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 202
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.49 E-value=1.3e-13 Score=129.94 Aligned_cols=83 Identities=23% Similarity=0.450 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
.....++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4566799999999999999999999999999999874 46789999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 004350 265 FSIPKDNP 272 (759)
Q Consensus 265 ~a~~k~~~ 272 (759)
|+.++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 203
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=7.4e-14 Score=125.33 Aligned_cols=83 Identities=24% Similarity=0.409 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+.. ++..|.|++|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34567899999999999999999999999999999874 467899999999999999999998 999999999999
Q ss_pred eecCCCCCC
Q 004350 264 HFSIPKDNP 272 (759)
Q Consensus 264 ~~a~~k~~~ 272 (759)
+|+.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999877644
No 204
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=8.8e-14 Score=124.53 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=71.4
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||+++|+++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|||..|+|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3567999999999999999999999997 999976 3556899999999999999999 89999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 886543
No 205
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=1.3e-13 Score=123.48 Aligned_cols=81 Identities=19% Similarity=0.383 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||+++++++|+++|++|| |..|.+ +++++|||||+|.+.++|++|+ .|++..|.|++|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445679999999999999999999999997 988874 4678999999999999999999 899999999999999
Q ss_pred ecCCCCCC
Q 004350 265 FSIPKDNP 272 (759)
Q Consensus 265 ~a~~k~~~ 272 (759)
|+.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876543
No 206
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=6e-14 Score=132.05 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=71.0
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCce-EEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEecCCCc
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALRALNRSDING--KRIKLEPSRPGG 355 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~Gf-gFVeF~~~e~A~~Al~~Lng~~i~G--~~L~V~~a~~k~ 355 (759)
-.|||+||++.+|+++|+++|++||.|.+|++..+++|| |||+|.+.++|++|++.|||..|.| ++|+|.|++++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 468899999999999999999999999999886667788 9999999999999999999999988 999999999864
No 207
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.49 E-value=8.4e-14 Score=134.11 Aligned_cols=82 Identities=23% Similarity=0.322 Sum_probs=74.6
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||..+|+++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.||+..|+|++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35679999999999999999999999999999987 3567899999999999999999999999999999999999
Q ss_pred CCCchhh
Q 004350 352 RPGGARR 358 (759)
Q Consensus 352 ~~k~~r~ 358 (759)
++....+
T Consensus 117 ~~~~~~~ 123 (156)
T 1h2v_Z 117 AGFKEGR 123 (156)
T ss_dssp SCCCTTC
T ss_pred CCCCCcC
Confidence 8765543
No 208
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.49 E-value=7.5e-14 Score=129.44 Aligned_cols=82 Identities=17% Similarity=0.430 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||+++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4456789999999999999999999999999999985 56779999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 004350 265 FSIPKDN 271 (759)
Q Consensus 265 ~a~~k~~ 271 (759)
|+.++..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9976554
No 209
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.49 E-value=1e-13 Score=123.27 Aligned_cols=77 Identities=23% Similarity=0.387 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEe-----CCCcceEEEEEecCHHHHHHHHHHcccccc
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------LYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL 256 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~--------v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l 256 (759)
.....++|||+|||+++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|++..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4556799999999999999999999999999987 653 467899999999999999999999999999
Q ss_pred CCceeeEeec
Q 004350 257 RRRKLDIHFS 266 (759)
Q Consensus 257 ~gr~L~V~~a 266 (759)
.|++|.|+|+
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999987
No 210
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.49 E-value=9.4e-14 Score=124.94 Aligned_cols=76 Identities=22% Similarity=0.382 Sum_probs=70.2
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
...++|||+|||+.+|+++|+++|++||.|+.|++ +++++|||||+|.+.++|++|++.|||..|+|+.|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 34679999999999999999999999999999976 34568999999999999999999999999999999999985
No 211
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=3.9e-14 Score=125.45 Aligned_cols=78 Identities=27% Similarity=0.393 Sum_probs=71.3
Q ss_pred cCccceEEeccCC-CCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 277 VNQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 277 ~~~~tLfV~NLp~-~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
...++|||+|||+ .+|+++|+++|++||.|..|++. +|||||+|.+.++|++|++.|+|..+.|++|+|.+++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 3567999999998 99999999999999999999983 7999999999999999999999999999999999998765
Q ss_pred hh
Q 004350 356 AR 357 (759)
Q Consensus 356 ~r 357 (759)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 212
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.5e-14 Score=125.28 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=72.2
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeE-EEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcE----E
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVK-EIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR----I 346 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~-~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~----L 346 (759)
...++|||+|||.++|+++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3467999999999999999999999999999 8876 3456899999999999999999999999999999 9
Q ss_pred EEEecCCCc
Q 004350 347 KLEPSRPGG 355 (759)
Q Consensus 347 ~V~~a~~k~ 355 (759)
+|.++++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998764
No 213
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.48 E-value=4.6e-14 Score=129.42 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEe-CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG-~I~~v~~-~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
....++|||+|||+++++++|+++|++|| +|..+.+ ..+++|||||+|.+.++|++|++.|++..|.|++|.|+++..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34568999999999999999999999999 8999886 357899999999999999999999999999999999999854
No 214
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.48 E-value=7.3e-14 Score=126.98 Aligned_cols=82 Identities=24% Similarity=0.392 Sum_probs=70.8
Q ss_pred CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
.....++|||+|||+++|+++|+++|++||.|..|++. +.++|||||+|.+.++|.+|++.+ +..|+|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 34456799999999999999999999999999999873 567899999999999999999976 599999999999
Q ss_pred ecCCCchh
Q 004350 350 PSRPGGAR 357 (759)
Q Consensus 350 ~a~~k~~r 357 (759)
++.++..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987654
No 215
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.2e-14 Score=123.14 Aligned_cols=80 Identities=15% Similarity=0.261 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeC--CCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 193 PSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr----~lFs~fG~I~~v~~~--gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
..++|||+|||+++++++|+ ++|++||.|..|.+. ...+|||||+|.+.++|++|++.|++..+.|++|.|+|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 46899999999999999999 999999999999863 222899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004350 267 IPKDNP 272 (759)
Q Consensus 267 ~~k~~~ 272 (759)
.+...+
T Consensus 88 ~~~~~~ 93 (96)
T 2dgx_A 88 TGASGP 93 (96)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 776543
No 216
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=120.76 Aligned_cols=78 Identities=21% Similarity=0.403 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~ 270 (759)
..+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|++..+.|++|.|+|+.++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 4567999999999999999999999999999999875 5699999999999999999999999999999999997764
Q ss_pred C
Q 004350 271 N 271 (759)
Q Consensus 271 ~ 271 (759)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 217
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.1e-14 Score=127.91 Aligned_cols=81 Identities=22% Similarity=0.392 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~---~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
......++|||+|||.++++++|+++|++||.|..|.+ .+.++|||||+|.+.++|++|++.|++..+.|++|.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999998885 345799999999999999999999999999999999999
Q ss_pred cCCC
Q 004350 266 SIPK 269 (759)
Q Consensus 266 a~~k 269 (759)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 218
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=125.14 Aligned_cols=81 Identities=14% Similarity=0.292 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~ 270 (759)
....++|||+|||.++++++|+++|++||.|..|.+. +.+|||||+|.+.++|++|++.|++..|.|++|.|.|+.++.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 4567899999999999999999999999999999875 349999999999999999999999999999999999998765
Q ss_pred CC
Q 004350 271 NP 272 (759)
Q Consensus 271 ~~ 272 (759)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 219
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.7e-14 Score=126.89 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEe-----CCCcceEEEEEecCHHHHHHHHHHccccc
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIR--------TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKP 255 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~--------~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~ 255 (759)
......++|||+|||+++++++|+++|++||.|. .|.+ +++++|||||+|.+.++|++|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999998 4653 46789999999999999999999999999
Q ss_pred cCCceeeEeecCCCCC
Q 004350 256 LRRRKLDIHFSIPKDN 271 (759)
Q Consensus 256 l~gr~L~V~~a~~k~~ 271 (759)
|.|++|.|+|+.++..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987654
No 220
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.48 E-value=7.7e-14 Score=127.85 Aligned_cols=78 Identities=17% Similarity=0.352 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567799999999999999999999999999999984 3577999999999999999999999999999999999
Q ss_pred eec
Q 004350 264 HFS 266 (759)
Q Consensus 264 ~~a 266 (759)
+|+
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 221
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.1e-14 Score=126.99 Aligned_cols=83 Identities=22% Similarity=0.381 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEE-eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDI----RTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I----~~v~-~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||+++|+++|+++|++||.| ..+. .+++++|||||+|.+.++|++|++.|++..|.|++|.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567999999999999999999999999998 4444 478899999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 004350 265 FSIPKDNP 272 (759)
Q Consensus 265 ~a~~k~~~ 272 (759)
|+.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99876543
No 222
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.1e-14 Score=126.65 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=70.6
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
+...++|||+|||+++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|.+|+. +++..|+|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3456899999999999999999999999999999863 5678999999999999999999 9999999999999987
Q ss_pred CC
Q 004350 352 RP 353 (759)
Q Consensus 352 ~~ 353 (759)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 223
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=5.4e-14 Score=124.53 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=69.6
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||+.+|+++|+++|++||.|..+.+ +++++|||||+|.+.++|++|++.|||..|+|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999999865432 4567899999999999999999999999999999999999
Q ss_pred CCC
Q 004350 352 RPG 354 (759)
Q Consensus 352 ~~k 354 (759)
+..
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 224
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.48 E-value=9.7e-14 Score=120.16 Aligned_cols=75 Identities=27% Similarity=0.415 Sum_probs=67.9
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
....++|||+|||+++|+++|+++|++||.|..|++ +++++|||||+|.+.++|.+|++ +++..|+|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999986 35668999999999999999996 588899999999987
Q ss_pred c
Q 004350 351 S 351 (759)
Q Consensus 351 a 351 (759)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 225
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=3.5e-14 Score=130.43 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=71.1
Q ss_pred cCccceEEeccCCC-CcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCC--CeeCCcEEEEEecCC
Q 004350 277 VNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKLEPSRP 353 (759)
Q Consensus 277 ~~~~tLfV~NLp~~-~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng--~~i~G~~L~V~~a~~ 353 (759)
...++|||+|||++ +|+++|+++|++||.|.+|++. +++|||||+|.+.++|.+|++.|++ ..|+|++|+|.++++
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 34679999999998 9999999999999999999985 5689999999999999999998864 569999999999987
Q ss_pred Cch
Q 004350 354 GGA 356 (759)
Q Consensus 354 k~~ 356 (759)
+..
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 654
No 226
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.3e-14 Score=127.74 Aligned_cols=81 Identities=27% Similarity=0.335 Sum_probs=72.9
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCe----EEEE-ecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEV----KEIR-ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I----~~v~-i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||.++|+++|+++|++||.| ..++ .+++++|||||+|.+.++|++|++.|+|..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 346799999999999999999999999998 4554 36788999999999999999999999999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 887544
No 227
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.8e-13 Score=123.94 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCC-----ceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-----RKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g-----r~L~V~ 264 (759)
.....++|||+|||+++++++|+++|++||+|..|.+... |||||+|.+.++|++|++.|++..|.| ++|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3456799999999999999999999999999999986533 999999999999999999999999999 999999
Q ss_pred ecCCCCC
Q 004350 265 FSIPKDN 271 (759)
Q Consensus 265 ~a~~k~~ 271 (759)
++.++..
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9987654
No 228
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.48 E-value=3.2e-14 Score=127.05 Aligned_cols=78 Identities=19% Similarity=0.351 Sum_probs=69.1
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe------cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE------TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i------~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
....++|||+|||+++|+++|+++|++|| |.+|++ +++++|||||+|.+.++|.+|+ .|+|..|+|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 999986 3456899999999999999999 899999999999999
Q ss_pred ecCCCc
Q 004350 350 PSRPGG 355 (759)
Q Consensus 350 ~a~~k~ 355 (759)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 229
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.7e-13 Score=121.36 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=71.4
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
...++|||+|| ++|+++|+++|++||.|..|++ .+++|||||+|.+.++|++|++.|+|..|+|++|+|.+++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 35679999996 8999999999999999999998 47789999999999999999999999999999999999987654
Q ss_pred h
Q 004350 357 R 357 (759)
Q Consensus 357 r 357 (759)
+
T Consensus 90 ~ 90 (97)
T 1x5p_A 90 L 90 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 230
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.48 E-value=1.2e-13 Score=119.59 Aligned_cols=76 Identities=18% Similarity=0.384 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++ +++..+.|++|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999884 46789999999999999999997 58888999999998
Q ss_pred ec
Q 004350 265 FS 266 (759)
Q Consensus 265 ~a 266 (759)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 231
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=124.46 Aligned_cols=80 Identities=14% Similarity=0.282 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEe---CCCcceEEEEEecCHHHHHHHHHHccccccCCc-
Q 004350 190 GEHPSRTLFVRNINSNV------EDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 259 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~v------teeeLr~lFs~fG~I~~v~~---~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr- 259 (759)
.....++|||+|||+.+ ++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+..|+|..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34557899999999999 78999999999999999985 467899999999999999999999999999999
Q ss_pred eeeEeecCCC
Q 004350 260 KLDIHFSIPK 269 (759)
Q Consensus 260 ~L~V~~a~~k 269 (759)
+|.|.|+...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998643
No 232
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.6e-13 Score=120.57 Aligned_cols=79 Identities=20% Similarity=0.386 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~f--G~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
...+.++|||+|||+++++++|+++|++| |.|..|.+ .+|||||+|.+.++|++|+..|++..|.|++|.|+|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 34567999999999999999999999999 99999875 47899999999999999999999999999999999998
Q ss_pred CCCC
Q 004350 268 PKDN 271 (759)
Q Consensus 268 ~k~~ 271 (759)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 233
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=1.4e-13 Score=123.85 Aligned_cols=78 Identities=22% Similarity=0.420 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999998874 467899999999999999999999999999999999999
Q ss_pred cC
Q 004350 266 SI 267 (759)
Q Consensus 266 a~ 267 (759)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 234
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.48 E-value=1.5e-13 Score=122.39 Aligned_cols=77 Identities=25% Similarity=0.384 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 190 GEHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~-~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
...+.++|||+|||+ ++++++|+++|++||.|..|.+ .+|||||+|.+.++|++|+..|++..+.|++|.|+|+.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 455789999999998 9999999999999999999987 389999999999999999999999999999999999865
Q ss_pred C
Q 004350 269 K 269 (759)
Q Consensus 269 k 269 (759)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 235
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.48 E-value=5.5e-14 Score=124.06 Aligned_cols=80 Identities=23% Similarity=0.573 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeC--CCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 191 EHPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr----~lFs~fG~I~~v~~~--gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
..+.++|||+|||.++++++|+ ++|++||.|..|.+. ++++|||||+|.+.++|++|++.|++..+.|++|.|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4568999999999999999999 999999999999853 4678999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004350 265 FSIPKD 270 (759)
Q Consensus 265 ~a~~k~ 270 (759)
|+.++.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 997654
No 236
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.48 E-value=9.8e-14 Score=120.35 Aligned_cols=76 Identities=22% Similarity=0.433 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
..++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+ .|++..+.|++|.|+++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999873 5678999999999999999999 899999999999999986
Q ss_pred CC
Q 004350 268 PK 269 (759)
Q Consensus 268 ~k 269 (759)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 237
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.6e-14 Score=129.08 Aligned_cols=80 Identities=16% Similarity=0.307 Sum_probs=72.5
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...++|||+|||..+|+++|+++|++||.|+.|++. +.++|||||+|.+.++|++||+. ++..|+|++|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 345799999999999999999999999999999863 45689999999999999999997 999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
+++..+
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 987654
No 238
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=123.26 Aligned_cols=83 Identities=20% Similarity=0.425 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~--~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
...+.++|||+|||+++++++|+++|++|+.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|.|+|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 456689999999999999999999999998877776 357789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 004350 268 PKDNP 272 (759)
Q Consensus 268 ~k~~~ 272 (759)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76543
No 239
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.47 E-value=2.1e-13 Score=126.34 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=72.4
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
...++|||+|||..+|+++|+++|++||.|+.|++ +++++|||||+|.+.++|.+|++.|+|..|+|+.|+|++|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 34579999999999999999999999999999987 34578999999999999999999999999999999999998
Q ss_pred CCc
Q 004350 353 PGG 355 (759)
Q Consensus 353 ~k~ 355 (759)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 753
No 240
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.47 E-value=3.6e-14 Score=124.81 Aligned_cols=76 Identities=21% Similarity=0.251 Sum_probs=67.8
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..++|||+|||+++|+++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.||+..|+|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3578999999999999999999999999875543 34678999999999999999999999999999999999987
Q ss_pred C
Q 004350 353 P 353 (759)
Q Consensus 353 ~ 353 (759)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 5
No 241
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=6.6e-14 Score=125.66 Aligned_cols=81 Identities=30% Similarity=0.484 Sum_probs=73.4
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
....++|||+|||+.+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++||+. ++..|+|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 345689999999999999999999999999999976 345679999999999999999998 99999999999999
Q ss_pred cCCCchh
Q 004350 351 SRPGGAR 357 (759)
Q Consensus 351 a~~k~~r 357 (759)
++++..+
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9987654
No 242
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=7.2e-14 Score=123.73 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 191 EHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 191 ~~~~rtLfVgNLP~-~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
..+.++|||+|||+ ++++++|+++|++||.|..|.+ .+|||||+|.+.++|++|+..|++..+.|++|.|+|+.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 45689999999998 9999999999999999999987 3899999999999999999999999999999999999766
Q ss_pred CCC
Q 004350 270 DNP 272 (759)
Q Consensus 270 ~~~ 272 (759)
..+
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 243
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.47 E-value=4.3e-14 Score=118.92 Aligned_cols=70 Identities=20% Similarity=0.361 Sum_probs=65.4
Q ss_pred ceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 281 tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
+|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ |++..|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999976 45678999999999999999998 9999999999999876
No 244
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9.3e-14 Score=125.40 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=72.7
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCC-eEEEEec------CCCCceEEEEECCHHHHHHHHHHhC--CCeeCCcEEEE
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGE-VKEIRET------PHKRHHKFIEFYDVRAAEAALRALN--RSDINGKRIKL 348 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~-I~~v~i~------~~s~GfgFVeF~~~e~A~~Al~~Ln--g~~i~G~~L~V 348 (759)
..++|||+|||.++|+++|+++|++||. |..|++. +.++|||||+|.+.++|.+|++.|+ +..++|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4678999999999999999999999998 9999874 3678999999999999999999996 58999999999
Q ss_pred EecCCCchh
Q 004350 349 EPSRPGGAR 357 (759)
Q Consensus 349 ~~a~~k~~r 357 (759)
.+++++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999887553
No 245
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.1e-14 Score=123.10 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeCCCcceEEEEEecCHHHHHHHHHHccc-cccCCceeeEeecCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYTACKHRGFVMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIP 268 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~-I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g-~~l~gr~L~V~~a~~ 268 (759)
....++|||+|||+++|+++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.|++ ..+.|++|.|+|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 345789999999999999999999999999 665554 4789999999999999999999999 999999999999987
Q ss_pred CCCC
Q 004350 269 KDNP 272 (759)
Q Consensus 269 k~~~ 272 (759)
+...
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6543
No 246
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.47 E-value=8.1e-14 Score=126.64 Aligned_cols=79 Identities=23% Similarity=0.477 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
....+.++|||+|||+++++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|++..+.|++|.|+|+.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 345678999999999999999999999999999999865 89999999999999999999999999999999999976
Q ss_pred CC
Q 004350 269 KD 270 (759)
Q Consensus 269 k~ 270 (759)
+.
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 247
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.4e-14 Score=123.47 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=69.6
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..++|||+|||..+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|+|+.|++.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4578999999999999999999999999999986 34568999999999999999999999999999999988776
Q ss_pred C
Q 004350 353 P 353 (759)
Q Consensus 353 ~ 353 (759)
+
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 248
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.4e-14 Score=125.75 Aligned_cols=77 Identities=12% Similarity=0.295 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
....++|||+|||+++|+++|+++|++||.|..|.+ .++++|||||+|.+.++|++|+. +++..|.|++|.|.|+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 445689999999999999999999999999999984 26789999999999999999999 9999999999999986
Q ss_pred CC
Q 004350 267 IP 268 (759)
Q Consensus 267 ~~ 268 (759)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 249
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.47 E-value=6.9e-14 Score=121.87 Aligned_cols=75 Identities=13% Similarity=0.307 Sum_probs=70.4
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
..++|||+|||+++|+++|+++|++| .|..|++. +++|||||+|.+.++|++|++.|||..++|++|+|+++..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 35789999999999999999999999 99999885 78899999999999999999999999999999999999764
No 250
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=120.29 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=70.6
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEE-ec-CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-ET-PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~-i~-~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
..++|||+|||+++|+++|+++|++||.|..|+ +. .+..+.|||+|.+.++|++|++.|||..|+|++|+|.++.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 457899999999999999999999999999995 53 3345669999999999999999999999999999999999874
No 251
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.47 E-value=2.3e-13 Score=131.10 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
..+.++|||+|||+++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+..|++..|.|++|.|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456799999999999999999999999999999985 467899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004350 266 SIPKDN 271 (759)
Q Consensus 266 a~~k~~ 271 (759)
+.++..
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 976543
No 252
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.47 E-value=6.7e-14 Score=131.24 Aligned_cols=82 Identities=18% Similarity=0.336 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--EEe-----CCCcceEEEEEecCHHHHHHHHHHcccc----ccC
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--LYT-----ACKHRGFVMISYYDIRAARTAMRALQNK----PLR 257 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~--v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~----~l~ 257 (759)
......++|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+. +|.+|+..|++. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34567899999999999999999999999999955 652 678999999999999 999999999999 999
Q ss_pred CceeeEeecCCCCC
Q 004350 258 RRKLDIHFSIPKDN 271 (759)
Q Consensus 258 gr~L~V~~a~~k~~ 271 (759)
|++|.|+|+.++..
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987654
No 253
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=8.7e-14 Score=126.72 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEeC--------CCcceEEEEEecCHHHHHHHHHHccccccCC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELR---SLFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRR 258 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr---~lFs~fG~I~~v~~~--------gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g 258 (759)
.....++|||+|||+++++++|+ ++|++||+|..|.+. ++++|||||+|.+.++|++|++.|++..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34557899999999999999999 999999999998842 2456999999999999999999999999999
Q ss_pred ceeeEeecCCCC
Q 004350 259 RKLDIHFSIPKD 270 (759)
Q Consensus 259 r~L~V~~a~~k~ 270 (759)
++|.|+|+.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 254
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.46 E-value=2.1e-13 Score=130.53 Aligned_cols=81 Identities=25% Similarity=0.424 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
.....++|||+|||+++|+++|+++|++||.|..|++...++|||||+|.+.++|++|+..|++..|.|++|.|+|+.++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 44567999999999999999999999999999999987668999999999999999999999999999999999999765
Q ss_pred C
Q 004350 270 D 270 (759)
Q Consensus 270 ~ 270 (759)
.
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 3
No 255
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.46 E-value=6.3e-14 Score=125.15 Aligned_cols=78 Identities=18% Similarity=0.387 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe------CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~------~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
....++|||+|||+++++++|+++|++|| |..|.+ +++++|||||+|.+.++|++|+ .|++..|.|++|.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45679999999999999999999999999 999984 4667999999999999999999 899999999999999
Q ss_pred ecCCCC
Q 004350 265 FSIPKD 270 (759)
Q Consensus 265 ~a~~k~ 270 (759)
++.++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 997653
No 256
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.46 E-value=3.7e-14 Score=133.01 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=71.8
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEE--EEe-----cCCCCceEEEEECCHHHHHHHHHHhCCC----eeCCc
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--IRE-----TPHKRHHKFIEFYDVRAAEAALRALNRS----DINGK 344 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~--v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~----~i~G~ 344 (759)
....++|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+. +|.+|++.|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999966 765 567799999999999 999999999999 99999
Q ss_pred EEEEEecCCCc
Q 004350 345 RIKLEPSRPGG 355 (759)
Q Consensus 345 ~L~V~~a~~k~ 355 (759)
+|+|++++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 257
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.5e-13 Score=119.41 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
...+.++|||+|| ++++++|+++|++||.|..|.+ .+++|||||+|.+.++|++|+..|++..|.|++|.|+|+.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 4456799999996 9999999999999999999987 488999999999999999999999999999999999999776
Q ss_pred CC
Q 004350 270 DN 271 (759)
Q Consensus 270 ~~ 271 (759)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 258
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=120.05 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=70.4
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
....+|||+|||+++|+++|+++|++| .|..|++ +++++|||||+|.+.++|++|++ |||..|+|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 346789999999999999999999999 8999876 35568999999999999999999 99999999999999998
Q ss_pred CCc
Q 004350 353 PGG 355 (759)
Q Consensus 353 ~k~ 355 (759)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 259
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=134.43 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG--~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
..++|||+|||+++|+++|+++|++|| .|..|++ +++++|||||+|.+.++|++|+..|++..|.|++|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 8998874 678999999999999999999999999999999999999
Q ss_pred cCCC
Q 004350 266 SIPK 269 (759)
Q Consensus 266 a~~k 269 (759)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8643
No 260
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=8e-14 Score=123.41 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=70.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
.....++|||+|||+++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345578999999999999999999999999985332 356789999999999999999999999999999999999
Q ss_pred ecCC
Q 004350 265 FSIP 268 (759)
Q Consensus 265 ~a~~ 268 (759)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9864
No 261
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=118.64 Aligned_cols=70 Identities=16% Similarity=0.346 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEe---CCCcceEEEEEecCHHHHHHHHHHccccccCCc-eeeE
Q 004350 194 SRTLFVRNINSNV------EDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDI 263 (759)
Q Consensus 194 ~rtLfVgNLP~~v------teeeLr~lFs~fG~I~~v~~---~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr-~L~V 263 (759)
+++|||+|||..+ ++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|+|..+.|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 77999999999999999985 467899999999999999999999999999999 8876
No 262
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=5.3e-14 Score=120.57 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=64.0
Q ss_pred cceEEeccCCCC------cHHHHHHHhhccCCeEEEEec---CCCCceEEEEECCHHHHHHHHHHhCCCeeCCc-EEEE
Q 004350 280 GTLVVFNLDASV------SNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGK-RIKL 348 (759)
Q Consensus 280 ~tLfV~NLp~~~------TeedLr~~Fs~fG~I~~v~i~---~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~-~L~V 348 (759)
++|||+|||..+ |+++|+++|++||.|.+|++. ++++|||||+|.+.++|.+|++.|||..|+|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 789999999999999999864 46789999999999999999999999999999 8876
No 263
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.5e-14 Score=120.72 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
.+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|+.|++.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999873 4677999999999999999999999999999999998876
Q ss_pred C
Q 004350 267 I 267 (759)
Q Consensus 267 ~ 267 (759)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 264
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.6e-13 Score=118.60 Aligned_cols=79 Identities=9% Similarity=0.206 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
.....++|||+|||+++++++|+++|++| .|..|.+ +++++|||||+|.+.++|++|++ |++..|.|++|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567999999999999999999999999 8888773 56789999999999999999999 999999999999999
Q ss_pred cCCCC
Q 004350 266 SIPKD 270 (759)
Q Consensus 266 a~~k~ 270 (759)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97653
No 265
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.5e-13 Score=119.78 Aligned_cols=81 Identities=14% Similarity=0.299 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++. +..|.|++|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 4556789999999999999999999999999999874 467899999999999999999994 678999999999
Q ss_pred ecCCCCCC
Q 004350 265 FSIPKDNP 272 (759)
Q Consensus 265 ~a~~k~~~ 272 (759)
|+.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99877654
No 266
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.45 E-value=7.9e-14 Score=121.47 Aligned_cols=75 Identities=16% Similarity=0.370 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
+..++|||+|||+++++++|+++|++| .|..|.+. +++|||||+|.+.++|++|++.|++..+.|++|.|+|+..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 457899999999999999999999999 99998875 8999999999999999999999999999999999999854
No 267
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.7e-13 Score=122.55 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHcccccc--------C
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL--------R 257 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l--------~ 257 (759)
...+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456799999999999999999999999999999874 467899999999999999999999999999 5
Q ss_pred CceeeEeecCCC
Q 004350 258 RRKLDIHFSIPK 269 (759)
Q Consensus 258 gr~L~V~~a~~k 269 (759)
+++|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998754
No 268
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.45 E-value=2e-13 Score=123.81 Aligned_cols=77 Identities=23% Similarity=0.493 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 191 EHPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~-vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
....++|||+|||++ +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|++.|++..|.|++|.|+|+.++
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 345689999999999 999999999999999999987 7899999999999999999999999999999999999754
Q ss_pred C
Q 004350 270 D 270 (759)
Q Consensus 270 ~ 270 (759)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 269
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.6e-13 Score=120.40 Aligned_cols=80 Identities=20% Similarity=0.378 Sum_probs=71.3
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
....++|||+|||+.+|+++|+++|++||.|+.|++ +++++|||||+|.+.++|++||+ ++..|+|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 345678999999999999999999999999999976 35668999999999999999999 57899999999999
Q ss_pred cCCCchh
Q 004350 351 SRPGGAR 357 (759)
Q Consensus 351 a~~k~~r 357 (759)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9887543
No 270
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=2e-13 Score=127.55 Aligned_cols=74 Identities=28% Similarity=0.302 Sum_probs=68.1
Q ss_pred ceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCce-EEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEecCCCc
Q 004350 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALRALNRSDING--KRIKLEPSRPGG 355 (759)
Q Consensus 281 tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~Gf-gFVeF~~~e~A~~Al~~Lng~~i~G--~~L~V~~a~~k~ 355 (759)
.|||+||++.+|+++|+++|++||.|++|++..+ .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+|+++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5789999999999999999999999999988544 586 9999999999999999999999988 699999999875
No 271
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.45 E-value=3.7e-14 Score=123.62 Aligned_cols=76 Identities=20% Similarity=0.429 Sum_probs=67.3
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
++|||+|||.++|+++|+++|++||.|..|++. ++++|||||+|.+.+ |.+|++.|||..++|++|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999873 567899999999999 99999999999999999999999875
Q ss_pred ch
Q 004350 355 GA 356 (759)
Q Consensus 355 ~~ 356 (759)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 272
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.45 E-value=3.2e-13 Score=126.91 Aligned_cols=76 Identities=25% Similarity=0.420 Sum_probs=69.5
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
....++|||+|||..+|+++|+++|++||.|+.|++. ++++|||||+|.+.++|++|++.|||..|+|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999873 45789999999999999999999999999999999998
Q ss_pred c
Q 004350 351 S 351 (759)
Q Consensus 351 a 351 (759)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 273
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.45 E-value=1.5e-13 Score=134.06 Aligned_cols=77 Identities=23% Similarity=0.306 Sum_probs=70.4
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEec-CCCCceEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEecCCCc
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALRALNRSDING--KRIKLEPSRPGG 355 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~-~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G--~~L~V~~a~~k~ 355 (759)
..+|||+||++.+|+++|+++|++||+|++|++. .+++|||||+|.+.++|++|++.|||..|.| ++|+|.|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 3579999999999999999999999999999874 4457899999999999999999999999965 999999999874
No 274
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.45 E-value=9e-14 Score=116.96 Aligned_cols=70 Identities=16% Similarity=0.389 Sum_probs=65.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 196 tLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
+|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++ +++..+.|++|.|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999874 56789999999999999999998 9999999999999985
No 275
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.3e-13 Score=121.42 Aligned_cols=80 Identities=11% Similarity=0.183 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT-LYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~-v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
.....++|||+|||+++|+++|+++|++||.|.. |.+ +++++|||||+|.+.++|++|+.. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456789999999999999999999999999987 653 578899999999999999999996 9999999999999
Q ss_pred ecCCCC
Q 004350 265 FSIPKD 270 (759)
Q Consensus 265 ~a~~k~ 270 (759)
++.+++
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 986544
No 276
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.44 E-value=6e-14 Score=123.38 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
....++|||+|||+++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 44569999999999999999999999999986443 2467899999999999999999999999999999999998
Q ss_pred cC
Q 004350 266 SI 267 (759)
Q Consensus 266 a~ 267 (759)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 277
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=1.4e-13 Score=144.28 Aligned_cols=79 Identities=23% Similarity=0.443 Sum_probs=72.6
Q ss_pred cCccceEEeccCCCCcHHHHH----HHhhccCCeEEEEe--cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 277 VNQGTLVVFNLDASVSNDDLR----QIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr----~~Fs~fG~I~~v~i--~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
...++|||+|||+++|+++|+ ++|++||.|++|++ +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 346799999999999999977 89999999999987 567889999999999999999999999999999999999
Q ss_pred cCCCc
Q 004350 351 SRPGG 355 (759)
Q Consensus 351 a~~k~ 355 (759)
++...
T Consensus 87 a~~~~ 91 (282)
T 3pgw_A 87 AKTDS 91 (282)
T ss_pred eccCc
Confidence 97654
No 278
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.44 E-value=2.7e-13 Score=118.87 Aligned_cols=77 Identities=23% Similarity=0.404 Sum_probs=63.9
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCe--eCCcEEEEEecCCC
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSD--INGKRIKLEPSRPG 354 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~--i~G~~L~V~~a~~k 354 (759)
....+|||+|||+++|+++|+++|++||.|++|++..+++|||||+|.+.++|++ |++.. +.|++|.|.+++++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 3567999999999999999999999999999999987789999999999999984 56665 46999999999987
Q ss_pred chh
Q 004350 355 GAR 357 (759)
Q Consensus 355 ~~r 357 (759)
..+
T Consensus 85 ~~~ 87 (89)
T 3d2w_A 85 HNK 87 (89)
T ss_dssp ---
T ss_pred CcC
Confidence 543
No 279
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.44 E-value=2e-13 Score=124.12 Aligned_cols=81 Identities=16% Similarity=0.389 Sum_probs=70.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.+ +..|.|++|.|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4456799999999999999999999999999999985 3678999999999999999999976 589999999999
Q ss_pred ecCCCCC
Q 004350 265 FSIPKDN 271 (759)
Q Consensus 265 ~a~~k~~ 271 (759)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987654
No 280
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.44 E-value=9.6e-14 Score=131.26 Aligned_cols=84 Identities=27% Similarity=0.439 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....+.++|||+|||+++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999984 5678999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 004350 264 HFSIPKDNP 272 (759)
Q Consensus 264 ~~a~~k~~~ 272 (759)
+|+.++..+
T Consensus 122 ~~a~~~~~~ 130 (135)
T 2lea_A 122 QMARYGRPP 130 (135)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 281
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=6.1e-14 Score=124.99 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=70.6
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEE----EecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI----RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v----~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
...+|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++ |||..|.|+.|+|.++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 46799999999999999999999999987652 2346789999999999999999999 999999999999999998
Q ss_pred Cchh
Q 004350 354 GGAR 357 (759)
Q Consensus 354 k~~r 357 (759)
+..+
T Consensus 95 ~~~~ 98 (101)
T 1fj7_A 95 RDGT 98 (101)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 282
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.44 E-value=3.2e-13 Score=125.07 Aligned_cols=82 Identities=22% Similarity=0.414 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
.....++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999998874 456899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004350 266 SIPKDN 271 (759)
Q Consensus 266 a~~k~~ 271 (759)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 976544
No 283
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.2e-13 Score=122.97 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=70.8
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCee--------CCc
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDI--------NGK 344 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i--------~G~ 344 (759)
...++|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45679999999999999999999999999999976 345689999999999999999999999999 578
Q ss_pred EEEEEecCCC
Q 004350 345 RIKLEPSRPG 354 (759)
Q Consensus 345 ~L~V~~a~~k 354 (759)
.|.|+|+.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999875
No 284
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.44 E-value=4e-13 Score=126.22 Aligned_cols=77 Identities=25% Similarity=0.475 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999985 35689999999999999999999999999999999999
Q ss_pred ec
Q 004350 265 FS 266 (759)
Q Consensus 265 ~a 266 (759)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 285
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=5.7e-14 Score=122.40 Aligned_cols=76 Identities=21% Similarity=0.402 Sum_probs=67.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCC
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k 269 (759)
++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.+ |++|+..|++..+.|++|.|+|+.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999884 3678999999999999 99999999999999999999999765
Q ss_pred CC
Q 004350 270 DN 271 (759)
Q Consensus 270 ~~ 271 (759)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 286
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=125.53 Aligned_cols=78 Identities=17% Similarity=0.297 Sum_probs=70.4
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHcccccc-----CCceee
Q 004350 190 GEHPSRTLFV--RNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL-----RRRKLD 262 (759)
Q Consensus 190 ~~~~~rtLfV--gNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l-----~gr~L~ 262 (759)
...+.++||| +||++++++++|+++|++||+|..|.+. ..||||||+|.+.++|++|++.|+|+.+ .+++|+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3456789999 6699999999999999999999999865 5699999999999999999999999988 689999
Q ss_pred EeecCC
Q 004350 263 IHFSIP 268 (759)
Q Consensus 263 V~~a~~ 268 (759)
|.|+..
T Consensus 100 v~~a~~ 105 (114)
T 2cq2_A 100 LNFVEK 105 (114)
T ss_dssp EEEESC
T ss_pred EEeccc
Confidence 999854
No 287
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.44 E-value=2.2e-13 Score=125.95 Aligned_cols=77 Identities=26% Similarity=0.456 Sum_probs=70.8
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
..++|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+ .|+|..|+|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999976 4567899999999999999999 799999999999999998
Q ss_pred CCc
Q 004350 353 PGG 355 (759)
Q Consensus 353 ~k~ 355 (759)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 288
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.2e-13 Score=122.59 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=70.6
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEE-EEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~-v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
....+|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+.++|++||+. ++..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34679999999999999999999999999987 765 567799999999999999999997 999999999999998
Q ss_pred CCCc
Q 004350 352 RPGG 355 (759)
Q Consensus 352 ~~k~ 355 (759)
.++.
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7653
No 289
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=8.2e-14 Score=117.53 Aligned_cols=71 Identities=25% Similarity=0.428 Sum_probs=66.0
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|.+|++.++ ..++|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999876 35568999999999999999999999 9999999999987
No 290
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.2e-13 Score=126.49 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=71.3
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCe-EEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEV-KEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I-~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
....+|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. |+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356789999999999999999999999999 77766 356799999999999999999986 999999999999999
Q ss_pred CCCchh
Q 004350 352 RPGGAR 357 (759)
Q Consensus 352 ~~k~~r 357 (759)
.++..+
T Consensus 92 ~~~~~~ 97 (114)
T 2cpy_A 92 TLEDMR 97 (114)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 765433
No 291
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6.1e-13 Score=117.21 Aligned_cols=80 Identities=24% Similarity=0.286 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~--~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
....++|||+|||+++++++|+++|++||.|..|+ ...+..|.|||+|.+.++|++|++.|++..|.|++|.|+|+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34578999999999999999999999999999994 3445566799999999999999999999999999999999987
Q ss_pred CC
Q 004350 269 KD 270 (759)
Q Consensus 269 k~ 270 (759)
++
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 292
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=6.4e-13 Score=135.84 Aligned_cols=159 Identities=21% Similarity=0.213 Sum_probs=108.8
Q ss_pred ccCCCc-cChhHHHhccccccccccCCCCcccccc-ccccc-CCcEEEEecCcchhhccceeeeeccCcccCccccc-cc
Q 004350 101 IGSLLP-DDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDS-GGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHY-PI 176 (759)
Q Consensus 101 i~NlLp-~d~d~~~~~vade~~v~kl~~~~~dlee-dlF~s-~G~v~V~~d~~esa~~g~~kv~f~~~~~~~~~~~~-~l 176 (759)
++||.+ ..+++.+..++.+ ++.+.+ .+... .|.++|+|...+.+..++..++-..-. ...+... ..
T Consensus 39 V~nLp~~~~te~~L~~~F~~---------~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~-g~~l~v~~a~ 108 (229)
T 2adc_A 39 VSNLNPERVTPQSLFILFGV---------YGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH-GKPIRITLSK 108 (229)
T ss_dssp EESCCTTTCCHHHHHHHHHH---------HTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCS-SSBCEEECCS
T ss_pred EeCCCcccCCHHHHHHHHHh---------CCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEEec
Confidence 899988 6555555555444 444555 33333 466899999988888777643311110 0111000 00
Q ss_pred CCCC--CCcc-----------------C------CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeCCCc
Q 004350 177 SNGV--GTVA-----------------G------EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYTACKH 230 (759)
Q Consensus 177 ~n~v--~~~~-----------------g------~~~~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG-~I~~v~~~gks 230 (759)
.... .... . .......+.++|||+|||.++++++|+++|++|| .|..|.+..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 188 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 188 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC
Confidence 0000 0000 0 0001124578999999999999999999999999 99999985568
Q ss_pred ceEEEEEecCHHHHHHHHHHccccccC-CceeeEeecCCC
Q 004350 231 RGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPK 269 (759)
Q Consensus 231 rGfAFVeF~~~e~A~kAi~~L~g~~l~-gr~L~V~~a~~k 269 (759)
+|||||+|.+.++|.+|++.|++..+. |++|.|.|+.++
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999999999999999999999999 999999999753
No 293
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.43 E-value=1.2e-13 Score=131.23 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=69.4
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCC---eEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~---I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
...+|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++||+ ||+..|+|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4578999999999999999999999999 777765 35678999999999999999999 999999999999999
Q ss_pred cCCCc
Q 004350 351 SRPGG 355 (759)
Q Consensus 351 a~~k~ 355 (759)
+.++.
T Consensus 122 a~~~e 126 (136)
T 2hgl_A 122 SHRTE 126 (136)
T ss_dssp CCHHH
T ss_pred CChHH
Confidence 86543
No 294
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=9.7e-14 Score=117.09 Aligned_cols=71 Identities=17% Similarity=0.417 Sum_probs=66.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.++ ..+.|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999988874 46789999999999999999999999 9999999999987
No 295
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.42 E-value=2.8e-13 Score=124.27 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=66.4
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcE-----EEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR-----IKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~-----L~V~~a~ 352 (759)
...+|||+|||+++|+++|+++|++||.|+.|++... |||||+|.+.++|++||+.|||..|+|++ |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 3578999999999999999999999999999998644 99999999999999999999999999998 7777766
Q ss_pred CC
Q 004350 353 PG 354 (759)
Q Consensus 353 ~k 354 (759)
++
T Consensus 93 ~~ 94 (115)
T 3beg_B 93 PR 94 (115)
T ss_dssp --
T ss_pred CC
Confidence 53
No 296
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.42 E-value=4.7e-13 Score=123.68 Aligned_cols=77 Identities=17% Similarity=0.358 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
..++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+ .|++..|.|++|.|+|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999998874 5778999999999999999999 799999999999999987
Q ss_pred CCC
Q 004350 268 PKD 270 (759)
Q Consensus 268 ~k~ 270 (759)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 297
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.42 E-value=3.4e-13 Score=126.88 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=70.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceE-EEEEecCHHHHHHHHHHccccccCC--ceeeEeecCCCC
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKD 270 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGf-AFVeF~~~e~A~kAi~~L~g~~l~g--r~L~V~~a~~k~ 270 (759)
--.|||+||++.+|+++|+++|++||+|.+|++..+.+|| |||+|.+.++|++|++.|+|..|.| +.|+|+|+.++.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 3577799999999999999999999999999876567888 9999999999999999999999988 899999998764
No 298
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8.6e-13 Score=116.18 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~ 270 (759)
....++|||+|||+++++++|+++|++||.|..|........||||+|.+.++|++|+. |++..|.|++|.|+++.++.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 34568999999999999999999999999999985432222299999999999999999 99999999999999987655
Q ss_pred C
Q 004350 271 N 271 (759)
Q Consensus 271 ~ 271 (759)
.
T Consensus 84 ~ 84 (94)
T 2e5g_A 84 F 84 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 299
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.1e-13 Score=124.37 Aligned_cols=78 Identities=18% Similarity=0.386 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC-----CCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA-----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~-----gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
+...++|||+|||+++++++|+++|++||.|..|.+. ++++|||||+|.+.++|++|+ .|++..|.|++|.|+|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3456899999999999999999999999999999853 678999999999999999999 8999999999999999
Q ss_pred cCCC
Q 004350 266 SIPK 269 (759)
Q Consensus 266 a~~k 269 (759)
+.++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8654
No 300
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.2e-13 Score=118.16 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=68.2
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
..++|||+|||+++|+++|+++|++||.|.+|........||||+|.+.++|.+|++ |+|..|+|+.|+|.++.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 456899999999999999999999999999984433222299999999999999999 999999999999998876543
No 301
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=1.1e-13 Score=123.31 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
....++|||+|||+++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..+.|++|.|.|+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 44678999999999999999999999999765511 356889999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 004350 267 IPKDN 271 (759)
Q Consensus 267 ~~k~~ 271 (759)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 77654
No 302
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.41 E-value=7.9e-13 Score=131.16 Aligned_cols=78 Identities=28% Similarity=0.402 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccC-CceeeEeecCCC
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPK 269 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG-~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~-gr~L~V~~a~~k 269 (759)
.+.++|||+|||.++++++|+++|++|| .|..|.+....+|||||+|.+.++|.+|+..|++..+. |++|.|.|+.++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 4589999999999999999999999999 99999875567999999999999999999999999999 999999998653
No 303
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=9.6e-13 Score=128.43 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC-CCcceEEEEEecCHHHHHHHHHHccccccCC--ceeeEeecCCC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPK 269 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~-gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g--r~L~V~~a~~k 269 (759)
.-.+|||+||++.+|+++|+++|++||+|.+|++. .+.+|||||+|.+.++|++|++.|+|..|.+ ++|+|+|+.++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 34678999999999999999999999999999863 4568999999999999999999999999965 99999999876
Q ss_pred CC
Q 004350 270 DN 271 (759)
Q Consensus 270 ~~ 271 (759)
..
T Consensus 125 ~l 126 (164)
T 1sjr_A 125 SL 126 (164)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 304
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.4e-13 Score=123.26 Aligned_cols=80 Identities=19% Similarity=0.429 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
...++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++. ++..|.|++|.|+|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34589999999999999999999999999988874 367899999999999999999997 999999999999999
Q ss_pred CCCCCC
Q 004350 267 IPKDNP 272 (759)
Q Consensus 267 ~~k~~~ 272 (759)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 877543
No 305
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=4.8e-13 Score=126.96 Aligned_cols=80 Identities=26% Similarity=0.372 Sum_probs=71.7
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEE--------E--EecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--------I--RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~--------v--~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~ 347 (759)
...+|||+|||+.+|+++|+++|++||.|.. + ..+++++|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4578999999999999999999999998865 3 24678899999999999999999999999999999999
Q ss_pred EEecCCCchh
Q 004350 348 LEPSRPGGAR 357 (759)
Q Consensus 348 V~~a~~k~~r 357 (759)
|.++++...+
T Consensus 124 V~~a~~~~~~ 133 (143)
T 3egn_A 124 VQFARSARPK 133 (143)
T ss_dssp EEECCCSCC-
T ss_pred EEECCCCCCc
Confidence 9999876544
No 306
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=6e-13 Score=126.26 Aligned_cols=80 Identities=19% Similarity=0.402 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------E--EeCCCcceEEEEEecCHHHHHHHHHHccccccCCce
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------L--YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 260 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~--------v--~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~ 260 (759)
..+.++|||+|||+++|+++|+++|++||.|.. + ..+++++|||||+|.+.++|.+|+..|++..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456799999999999999999999999998754 2 246889999999999999999999999999999999
Q ss_pred eeEeecCCCC
Q 004350 261 LDIHFSIPKD 270 (759)
Q Consensus 261 L~V~~a~~k~ 270 (759)
|.|+|+.+..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 307
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.1e-13 Score=123.57 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=69.0
Q ss_pred CccceEE--eccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCee-----CCcEEEEEe
Q 004350 278 NQGTLVV--FNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI-----NGKRIKLEP 350 (759)
Q Consensus 278 ~~~tLfV--~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i-----~G~~L~V~~ 350 (759)
..++||| +||++++|+++|+++|++||.|..|.+. ..+|||||+|.+.++|++|++.|||++| .|+.|.|.+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 4578999 5599999999999999999999999885 3589999999999999999999999998 689999999
Q ss_pred cCCC
Q 004350 351 SRPG 354 (759)
Q Consensus 351 a~~k 354 (759)
++..
T Consensus 103 a~~~ 106 (114)
T 2cq2_A 103 VEKV 106 (114)
T ss_dssp ESCC
T ss_pred cccC
Confidence 8754
No 308
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.40 E-value=6.3e-13 Score=129.47 Aligned_cols=83 Identities=19% Similarity=0.378 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....+.++|||+|||+.+++++|+++|++||.|..|.+ ++.++|||||+|.+.++|++|+..|++..|.|++|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999874 4568999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 004350 264 HFSIPKDN 271 (759)
Q Consensus 264 ~~a~~k~~ 271 (759)
.|+.++..
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 99976543
No 309
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=2.3e-13 Score=125.50 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=69.3
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCC---eEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~---I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
....+|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 34578999999999999999999999998 777765 35678999999999999999999 99999999999999
Q ss_pred ecCCC
Q 004350 350 PSRPG 354 (759)
Q Consensus 350 ~a~~k 354 (759)
++.++
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 310
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=6.2e-13 Score=117.69 Aligned_cols=72 Identities=26% Similarity=0.382 Sum_probs=65.2
Q ss_pred cceEEeccCCCCcHHH----HHHHhhcc-CCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 280 GTLVVFNLDASVSNDD----LRQIFGAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 280 ~tLfV~NLp~~~Teed----Lr~~Fs~f-G~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
+.|||+|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|.+|++.|+|..|.||.|+|.+|+.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 3499999999999988 55899999 599988 33 99999999999999999999999999999999999876
Q ss_pred ch
Q 004350 355 GA 356 (759)
Q Consensus 355 ~~ 356 (759)
.+
T Consensus 85 sd 86 (96)
T 2diu_A 85 RE 86 (96)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 311
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=4e-13 Score=117.80 Aligned_cols=76 Identities=22% Similarity=0.458 Sum_probs=63.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccc--cCCceeeEeecCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSIP 268 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~--l~gr~L~V~~a~~ 268 (759)
..+..+|||+|||+++|+++|+++|++||.|.+|++...+||||||+|.+.++|++ +++.. +.|++|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 45679999999999999999999999999999999876799999999999999984 34444 5699999999977
Q ss_pred CC
Q 004350 269 KD 270 (759)
Q Consensus 269 k~ 270 (759)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 54
No 312
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.40 E-value=1e-13 Score=132.14 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=69.4
Q ss_pred ceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCCCCCCccCccceEEeccCCCCcHHHHHHHhhccCCeEEEE
Q 004350 231 RGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR 310 (759)
Q Consensus 231 rGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~~~~~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~ 310 (759)
+|+||.+|..++.+-.++..+... ..+....-..... ..........+|||+|||+++|+++|+++|++|| |+.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~--~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDS--EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCCCCc--ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 367888888888777777654432 3333221111111 1112223457899999999999999999999999 66887
Q ss_pred e----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 311 E----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 311 i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
+ .++++|||||+|.+.++|++|| .+|+..|+|+.|+|.++.+...
T Consensus 77 i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 77 IEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 6 3567899999999999999999 7899999999999999987654
No 313
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=4.8e-13 Score=122.16 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=67.1
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
..+|||+|||+++|+++|+++|+.| .|..|++. ++++|||||+|.+.++|++|| .||+..|+|+.|+|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 89899863 567999999999999999999 6999999999999988864
No 314
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=9.1e-13 Score=116.64 Aligned_cols=74 Identities=18% Similarity=0.342 Sum_probs=66.0
Q ss_pred CCcE-EEEcCCCCCCCHHH----HHHHhhcc-CCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 193 PSRT-LFVRNINSNVEDLE----LRSLFEQY-GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 193 ~~rt-LfVgNLP~~vteee----Lr~lFs~f-G~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
++.| |||+|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|+|..+.|++|+|.|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 3455 99999999999988 55899999 599998 33 99999999999999999999999999999999999
Q ss_pred CCCCC
Q 004350 267 IPKDN 271 (759)
Q Consensus 267 ~~k~~ 271 (759)
..+.+
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 76554
No 315
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=7.4e-13 Score=119.12 Aligned_cols=79 Identities=9% Similarity=0.194 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
.....++|||+|||+++|+++|+++|++||.| .|++ +++++|||||+|.+.++|++|++ +++..|.++.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34567899999999999999999999999965 6653 57789999999999999999995 899999999999998
Q ss_pred cCCCC
Q 004350 266 SIPKD 270 (759)
Q Consensus 266 a~~k~ 270 (759)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86544
No 316
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.3e-13 Score=121.39 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=68.2
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
....+|||+|||+++|+++|+++|++||.| .|++ +++++|||||+|.+.++|++||+ +|+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 345789999999999999999999999954 7765 45678999999999999999995 89999999999999987
Q ss_pred CCc
Q 004350 353 PGG 355 (759)
Q Consensus 353 ~k~ 355 (759)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 317
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.38 E-value=1.9e-13 Score=114.86 Aligned_cols=70 Identities=20% Similarity=0.410 Sum_probs=64.6
Q ss_pred ceEEeccCCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 281 tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++ +++..|+|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999976 35678999999999999999999 4899999999999875
No 318
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.38 E-value=3e-13 Score=139.23 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=71.3
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccC--CeEEEEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG--~I~~v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
..++|||+||++.+|+++|+++|++|| .|++|++ +++++|||||+|.+.++|++||+.||+..|+|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 356899999999999999999999999 9999986 567799999999999999999999999999999999999
Q ss_pred cCCCc
Q 004350 351 SRPGG 355 (759)
Q Consensus 351 a~~k~ 355 (759)
+++..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98654
No 319
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.8e-13 Score=127.03 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=68.8
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEE-E----ecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-R----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v-~----i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
...+|||+|||+++|+++|+++|++||.|..+ . .+++++|||||+|.+.++|++||+ |||..|+|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45799999999999999999999999998652 2 246678999999999999999999 99999999999999997
Q ss_pred CCc
Q 004350 353 PGG 355 (759)
Q Consensus 353 ~k~ 355 (759)
++.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 320
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.38 E-value=2.4e-13 Score=122.96 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=70.2
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCC---eEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGE---VKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~---I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
....+|||+|||+++|+++|+++|+.||. |..|++. ++++|||||+|.+.++|++||+ |++..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35678999999999999999999999988 8888763 5678999999999999999999 99999999999999
Q ss_pred ecCCCc
Q 004350 350 PSRPGG 355 (759)
Q Consensus 350 ~a~~k~ 355 (759)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 997643
No 321
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.3e-13 Score=123.44 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDI-RTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I-~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...+.++|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++|++. ++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567999999999999999999999999999 55553 467899999999999999999996 9999999999999
Q ss_pred ecCCC
Q 004350 265 FSIPK 269 (759)
Q Consensus 265 ~a~~k 269 (759)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 322
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=3.8e-14 Score=129.76 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=72.4
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEE--------EEe-----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCc
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGK 344 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~--------v~i-----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~ 344 (759)
..++|||+|||.++|+++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|||..|+|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4678999999999999999999999999988 654 356789999999999999999999999999999
Q ss_pred EEEEEecCCCchh
Q 004350 345 RIKLEPSRPGGAR 357 (759)
Q Consensus 345 ~L~V~~a~~k~~r 357 (759)
+|+|.+++++..+
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999876544
No 323
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.5e-13 Score=117.13 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=67.4
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCchh
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 357 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~r 357 (759)
..++|||+|||.++|+++|+++|++||.|.+|++...++|||||+|.+.++|++|+. ....+.|++|+|.+++++...
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCCC
Confidence 357899999999999999999999999999999977789999999999999986533 133558999999999887543
No 324
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.4e-13 Score=116.49 Aligned_cols=79 Identities=24% Similarity=0.434 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~~ 271 (759)
...++|||+|||+++++++|+++|++||.|..|++...++|||||+|.+.++|++|... ...+.+++|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 35799999999999999999999999999999997667899999999999999865432 3456899999999987654
Q ss_pred C
Q 004350 272 P 272 (759)
Q Consensus 272 ~ 272 (759)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 325
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.37 E-value=1.3e-12 Score=112.75 Aligned_cols=71 Identities=21% Similarity=0.396 Sum_probs=65.9
Q ss_pred CccceEEeccCCCCcHHHHHHHhhcc----C-------CeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAY----G-------EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~f----G-------~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L 346 (759)
..++|||+|||+++|+++|+++|++| | .|.++++. +.+|||||+|.+.++|.+|+ .|||..|+|++|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 45789999999999999999999999 8 89999885 45899999999999999999 999999999999
Q ss_pred EEEe
Q 004350 347 KLEP 350 (759)
Q Consensus 347 ~V~~ 350 (759)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 326
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.37 E-value=9e-13 Score=113.73 Aligned_cols=72 Identities=18% Similarity=0.377 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCce
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 260 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~f----G-------~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~ 260 (759)
++.++|||+|||+++++++|+++|++| | .|..+.+. +.+|||||+|.+.++|++|+ .|++..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 457899999999999999999999999 8 99999865 66999999999999999999 89999999999
Q ss_pred eeEee
Q 004350 261 LDIHF 265 (759)
Q Consensus 261 L~V~~ 265 (759)
|.|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 327
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=1.5e-12 Score=121.67 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=66.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceE-EEEEecCHHHHHHHHHHccccccCC--ceeeEeecCCCC
Q 004350 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKD 270 (759)
Q Consensus 196 tLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGf-AFVeF~~~e~A~kAi~~L~g~~l~g--r~L~V~~a~~k~ 270 (759)
.|||+||++.+|+++|+++|++||.|.+|++..+ .|| |||+|.+.++|++|++.|+|..|.| ++|+|+|+.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4679999999999999999999999999986434 486 9999999999999999999999987 699999998765
No 328
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=3.3e-13 Score=120.38 Aligned_cols=79 Identities=23% Similarity=0.475 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
+...++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+. ++..+.|++|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 445789999999999999999999999999999884 46689999999999999999999 889999999999998
Q ss_pred CCCCC
Q 004350 267 IPKDN 271 (759)
Q Consensus 267 ~~k~~ 271 (759)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76544
No 329
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2e-13 Score=126.67 Aligned_cols=77 Identities=9% Similarity=0.191 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE---EE--eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT---LY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~---v~--~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
....++|||+|||+++|+++|+++|++||.|.. +. .+++++|||||+|.+.++|++|+. |++..|.|++|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345689999999999999999999999999754 22 357889999999999999999999 999999999999999
Q ss_pred cCC
Q 004350 266 SIP 268 (759)
Q Consensus 266 a~~ 268 (759)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 854
No 330
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.36 E-value=1e-12 Score=122.04 Aligned_cols=78 Identities=19% Similarity=0.369 Sum_probs=71.0
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
...++|||+|| ++|+++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|+|..|+|++|+|.+++++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 34679999996 69999999999999999999984 7789999999999999999999999999999999999988754
Q ss_pred h
Q 004350 357 R 357 (759)
Q Consensus 357 r 357 (759)
.
T Consensus 114 ~ 114 (121)
T 2bz2_A 114 L 114 (121)
T ss_dssp -
T ss_pred C
Confidence 4
No 331
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.36 E-value=3.6e-13 Score=113.09 Aligned_cols=70 Identities=19% Similarity=0.456 Sum_probs=64.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 196 tLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
+|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++ +++..+.|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999874 36789999999999999999999 5889999999999875
No 332
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.36 E-value=6.6e-13 Score=122.44 Aligned_cols=77 Identities=6% Similarity=0.102 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~---I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 345789999999999999999999999998 666652 47789999999999999999999 9999999999999
Q ss_pred eecCC
Q 004350 264 HFSIP 268 (759)
Q Consensus 264 ~~a~~ 268 (759)
.++.+
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98753
No 333
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.36 E-value=6.1e-13 Score=126.27 Aligned_cols=76 Identities=7% Similarity=0.086 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~---I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|++|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 456789999999999999999999999998 655552 47889999999999999999999 9999999999999
Q ss_pred eecC
Q 004350 264 HFSI 267 (759)
Q Consensus 264 ~~a~ 267 (759)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9874
No 334
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.36 E-value=6.9e-13 Score=136.49 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG--~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
..++|||+|||+++|+++|+++|++|| +|..|++ +++++|||||+|.+.++|++||+.|++..|.|++|.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 9999874 678999999999999999999999999999999999999
Q ss_pred cC
Q 004350 266 SI 267 (759)
Q Consensus 266 a~ 267 (759)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 335
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=6.6e-14 Score=128.19 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEe-----CCCcceEEEEEecCHHHHHHHHHHccccccC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------LYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 257 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~--------v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~ 257 (759)
..+.++|||+|||+++++++|+++|++||.|.. |.+ +++++|||||+|.+.++|++|++.|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456799999999999999999999999999987 542 4678999999999999999999999999999
Q ss_pred CceeeEeecCCCCCC
Q 004350 258 RRKLDIHFSIPKDNP 272 (759)
Q Consensus 258 gr~L~V~~a~~k~~~ 272 (759)
|++|.|+|+.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 336
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=2.3e-12 Score=129.13 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHc--cccccCCceeeEeecCCCCCCCC-----CccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEec
Q 004350 240 DIRAARTAMRAL--QNKPLRRRKLDIHFSIPKDNPSE-----KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET 312 (759)
Q Consensus 240 ~~e~A~kAi~~L--~g~~l~gr~L~V~~a~~k~~~~~-----~~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~ 312 (759)
+.+.+..|++.. ....+.+....|.....+..+.. .....++|||+|||+++|+++|+++|++||.|..|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667888888876 44455565566665532222211 22345799999999999999999999999999999863
Q ss_pred ----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 004350 313 ----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (759)
Q Consensus 313 ----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~ 355 (759)
+.++|||||+|.+.++|.+|++.+ +..++|+.|+|.+++.-.
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYF 188 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC-
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHH
Confidence 567899999999999999999865 469999999999987543
No 337
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.35 E-value=4.8e-13 Score=119.35 Aligned_cols=78 Identities=24% Similarity=0.481 Sum_probs=70.3
Q ss_pred cCccceEEeccCCCCcHHHHHHHhhccCCeEEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
...++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ ++..++|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34679999999999999999999999999999976 34578999999999999999999 9999999999999998
Q ss_pred CCch
Q 004350 353 PGGA 356 (759)
Q Consensus 353 ~k~~ 356 (759)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6643
No 338
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.34 E-value=1.6e-12 Score=119.28 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCce-----eeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK-----LDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~-----L~V~~a 266 (759)
+..++|||+|||+++++++|+++|++||+|..|.+... |||||+|.+.++|++|++.|++..|.|++ |.|..+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 45789999999999999999999999999999987533 99999999999999999999999999998 666655
Q ss_pred CCC
Q 004350 267 IPK 269 (759)
Q Consensus 267 ~~k 269 (759)
.+.
T Consensus 92 ~~~ 94 (115)
T 3beg_B 92 GPR 94 (115)
T ss_dssp C--
T ss_pred CCC
Confidence 443
No 339
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.34 E-value=2.5e-12 Score=127.20 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=72.2
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
..++|||+|||+.+|+++|+++|++||.|+.|++. +.++|||||+|.+.++|++|++.|+|..|+|+.|+|+++.+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 45799999999999999999999999999999873 55789999999999999999999999999999999999986
Q ss_pred Cc
Q 004350 354 GG 355 (759)
Q Consensus 354 k~ 355 (759)
..
T Consensus 167 ~~ 168 (177)
T 2f3j_A 167 QI 168 (177)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 340
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.33 E-value=7.1e-13 Score=119.85 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~---I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
....++|||+|||+++|+++|+++|++||. |..|.+ .++++|||||+|.+.++|++|+. +++..+.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 456789999999999999999999999998 777763 36789999999999999999999 9999999999999
Q ss_pred eecCC
Q 004350 264 HFSIP 268 (759)
Q Consensus 264 ~~a~~ 268 (759)
.++.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99854
No 341
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.33 E-value=2.7e-12 Score=126.97 Aligned_cols=80 Identities=23% Similarity=0.431 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
.....++|||+|||+++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999885 367899999999999999999999999999999999999
Q ss_pred cCCC
Q 004350 266 SIPK 269 (759)
Q Consensus 266 a~~k 269 (759)
+.+.
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8653
No 342
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=6.1e-13 Score=124.10 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=67.1
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCe----EEEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEV----KEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I----~~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
...+|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. ++..|+|+.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 35689999999999999999999999975 45554 467789999999999999999996 9999999999999
Q ss_pred ecCCC
Q 004350 350 PSRPG 354 (759)
Q Consensus 350 ~a~~k 354 (759)
.+.++
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 343
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.4e-12 Score=117.51 Aligned_cols=74 Identities=8% Similarity=0.153 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
...++|||+|||+++|+++|+++|++| .|..|.+ .++++|||||+|.+.++|++|+ .+++..|.|+.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 345799999999999999999999999 8888874 3678999999999999999999 599999999999998774
No 344
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.31 E-value=3e-12 Score=118.81 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~k~ 270 (759)
..+.++|||+|| ++++++|+++|++||.|..|.+. +++|||||+|.+.++|++|+..|++..+.|++|.|.|+.++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 456799999996 79999999999999999999874 889999999999999999999999999999999999997654
Q ss_pred C
Q 004350 271 N 271 (759)
Q Consensus 271 ~ 271 (759)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 345
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.31 E-value=3.2e-12 Score=132.24 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=70.3
Q ss_pred cCccceEEeccCCCC---------cHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCee------
Q 004350 277 VNQGTLVVFNLDASV---------SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI------ 341 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~---------TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i------ 341 (759)
...++|||+||+..+ ++++|+++|++||.|++|++. .++|||||+|.+.++|++|+++|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 356799999999998 799999999999999999985 4689999999999999999999999999
Q ss_pred ------CCcEEEEEecCCCch
Q 004350 342 ------NGKRIKLEPSRPGGA 356 (759)
Q Consensus 342 ------~G~~L~V~~a~~k~~ 356 (759)
.|+.|.|+||+....
T Consensus 211 e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TGGGGGGSCCCEEEECC----
T ss_pred cccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 346
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.30 E-value=1.5e-12 Score=121.92 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=66.6
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeE--EEEe----cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVK--EIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~--~v~i----~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a 351 (759)
...+|||+|||+++|+++|+++|++| .|+ .|++ .++++|||||+|.+.++|++||+ +++..|+|+.|+|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEEC
Confidence 45789999999999999999999999 676 7875 35679999999999999999998 4789999999999988
Q ss_pred CCC
Q 004350 352 RPG 354 (759)
Q Consensus 352 ~~k 354 (759)
.++
T Consensus 119 ~~~ 121 (126)
T 2hgm_A 119 SQE 121 (126)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 347
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.30 E-value=1.3e-12 Score=124.55 Aligned_cols=79 Identities=9% Similarity=0.182 Sum_probs=68.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
.....++|||+|||+++|+++|+++|++|| |..|++ .++++|||||+|.+.++|++|+ .+++..|.++.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999 667773 4678999999999999999999 6999999999999999
Q ss_pred cCCCC
Q 004350 266 SIPKD 270 (759)
Q Consensus 266 a~~k~ 270 (759)
+.++.
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 86654
No 348
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.29 E-value=3.3e-12 Score=119.68 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=67.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--EEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIR--TLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 190 ~~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~--~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
.....++|||+|||+++|+++|+++|++| .|. .|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 34567899999999999999999999999 666 7763 37789999999999999999999 5779999999999
Q ss_pred eecCC
Q 004350 264 HFSIP 268 (759)
Q Consensus 264 ~~a~~ 268 (759)
.++.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.29 E-value=3.9e-12 Score=131.58 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHcccccc-----
Q 004350 191 EHPSRTLFVRNINSNV---------EDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL----- 256 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~v---------teeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l----- 256 (759)
....++|||+||+..+ ++++|+++|++||+|..|++. .++|||||+|.+.++|+.|+++|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4568999999999998 799999999999999999875 6899999999999999999999999999
Q ss_pred -------CCceeeEeecCCCCCC
Q 004350 257 -------RRRKLDIHFSIPKDNP 272 (759)
Q Consensus 257 -------~gr~L~V~~a~~k~~~ 272 (759)
.|+.|.|+||..+.++
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876554
No 350
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.8e-12 Score=120.97 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEE----eCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDI----RTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I----~~v~----~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
...++|||+|||+++|+++|+++|++||.| ..|+ .+++++|||||+|.+.++|++|++. ++..|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999975 3343 2578999999999999999999995 999999999999
Q ss_pred eecC
Q 004350 264 HFSI 267 (759)
Q Consensus 264 ~~a~ 267 (759)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 351
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=6.8e-12 Score=114.66 Aligned_cols=73 Identities=14% Similarity=0.266 Sum_probs=62.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----C---CCcceEEEEEecCHHHHHHHHHHccccccCCceee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----A---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~---gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~ 262 (759)
....++|||+|||+++++++|+++|++||.|. +.+ + ++++|||||+|.+.++|++|++.|+ .+.|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34579999999999999999999999999999 552 2 5789999999999999999999984 36677666
Q ss_pred Eeec
Q 004350 263 IHFS 266 (759)
Q Consensus 263 V~~a 266 (759)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6544
No 352
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.27 E-value=1.4e-11 Score=111.64 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=66.9
Q ss_pred CccceEEeccCC-----CCcHHHHHHHhhccCCeEEEEec------CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 004350 278 NQGTLVVFNLDA-----SVSNDDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (759)
Q Consensus 278 ~~~tLfV~NLp~-----~~TeedLr~~Fs~fG~I~~v~i~------~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L 346 (759)
..++|+|+||.. +.++++|+++|++||.|.+|.+. ++++||+||+|.+.++|.+|++.|||+.++|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 467899999963 23789999999999999999763 3568999999999999999999999999999999
Q ss_pred EEEecCC
Q 004350 347 KLEPSRP 353 (759)
Q Consensus 347 ~V~~a~~ 353 (759)
+|.++.+
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999965
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.7e-11 Score=111.71 Aligned_cols=80 Identities=15% Similarity=0.272 Sum_probs=69.6
Q ss_pred cCccceEEeccCCCCc-----------HHHHHHHhhccCCeEEEEe-cCCCCceEEEEECCHHHHHHHHHHhCCCeeCCc
Q 004350 277 VNQGTLVVFNLDASVS-----------NDDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALRALNRSDINGK 344 (759)
Q Consensus 277 ~~~~tLfV~NLp~~~T-----------eedLr~~Fs~fG~I~~v~i-~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~ 344 (759)
...++|+|+||....+ +++|+++|++||.|+.|.+ ...++|||||+|.+.++|++|++.|||..|+|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4567999999944332 6899999999999999976 345789999999999999999999999999999
Q ss_pred EEEEEecCCCch
Q 004350 345 RIKLEPSRPGGA 356 (759)
Q Consensus 345 ~L~V~~a~~k~~ 356 (759)
+|+|.++.++..
T Consensus 93 ~l~v~~a~~~~~ 104 (112)
T 2dit_A 93 QITAQAWDGTTD 104 (112)
T ss_dssp ECEEEECCSCCC
T ss_pred EEEEEEeCCCCC
Confidence 999999987643
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=8.5e-12 Score=114.00 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=66.2
Q ss_pred CccceEEeccCCCCcHHHHHHHhhccCCeEEEEec--------CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~--------~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
..++|||+|||+++|+++|+++|++||.|. +.+. ++++|||||+|.+.++|++||+.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 6542 4679999999999999999999985 5899999888
Q ss_pred ecCCCchh
Q 004350 350 PSRPGGAR 357 (759)
Q Consensus 350 ~a~~k~~r 357 (759)
.+.+...+
T Consensus 84 ~~~~~~~~ 91 (114)
T 2dnl_A 84 SSPTIKDK 91 (114)
T ss_dssp CCSSSCSE
T ss_pred cCCCcCCC
Confidence 77654433
No 355
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.27 E-value=7.7e-12 Score=116.78 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=68.0
Q ss_pred cceEEecc----CCCCcHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEECC----HHH----HHHHHH--HhCCCe
Q 004350 280 GTLVVFNL----DASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYD----VRA----AEAALR--ALNRSD 340 (759)
Q Consensus 280 ~tLfV~NL----p~~~TeedLr~~Fs~fG~I~~v~i-----~~~s~GfgFVeF~~----~e~----A~~Al~--~Lng~~ 340 (759)
.+|||+|| |+.+++++|+++|+.||+|.+|.+ ++.++|||||+|.+ +++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 999999999999999999999975 67889999999996 333 889988 789999
Q ss_pred eCCcEEEEEecCCCch
Q 004350 341 INGKRIKLEPSRPGGA 356 (759)
Q Consensus 341 i~G~~L~V~~a~~k~~ 356 (759)
|+|++|+|.+-+.+..
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999887765
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.9e-11 Score=110.21 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEe-CCCcceEEEEEecCHHHHHHHHHHcccccc
Q 004350 189 YGEHPSRTLFVRNINSNVE-----------DLELRSLFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPL 256 (759)
Q Consensus 189 ~~~~~~rtLfVgNLP~~vt-----------eeeLr~lFs~fG~I~~v~~-~gksrGfAFVeF~~~e~A~kAi~~L~g~~l 256 (759)
....++++|+|+||....+ +++|+++|++||.|..|.+ ...++|||||+|.+.++|++|++.|++..|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3566789999999954432 5899999999999999875 345799999999999999999999999999
Q ss_pred CCceeeEeecCCCCC
Q 004350 257 RRRKLDIHFSIPKDN 271 (759)
Q Consensus 257 ~gr~L~V~~a~~k~~ 271 (759)
.|++|.|.|+.++..
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999977543
No 357
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.23 E-value=1.6e-11 Score=137.83 Aligned_cols=80 Identities=26% Similarity=0.453 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEee
Q 004350 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~-----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~ 265 (759)
..+.++|||+|||+.+|+++|+++|++||.|..|.+ +++++|||||+|.+.++|.+||..|++..|.|++|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999875 567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 004350 266 SIPKD 270 (759)
Q Consensus 266 a~~k~ 270 (759)
+.++.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97543
No 358
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.22 E-value=3.3e-11 Score=109.17 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=68.1
Q ss_pred CCCCcEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEeC------CCcceEEEEEecCHHHHHHHHHHccccccCCc
Q 004350 191 EHPSRTLFVRNINS-----NVEDLELRSLFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRR 259 (759)
Q Consensus 191 ~~~~rtLfVgNLP~-----~vteeeLr~lFs~fG~I~~v~~~------gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr 259 (759)
..++++|+|+|+.. +-++++|+++|++||.|.+|.+. ++++|||||+|.+.++|.+|++.|+|+.|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34689999999963 34789999999999999999842 46799999999999999999999999999999
Q ss_pred eeeEeecCC
Q 004350 260 KLDIHFSIP 268 (759)
Q Consensus 260 ~L~V~~a~~ 268 (759)
+|.|.|+.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999853
No 359
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=8e-11 Score=105.83 Aligned_cols=67 Identities=24% Similarity=0.283 Sum_probs=60.5
Q ss_pred CCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCCch
Q 004350 288 DASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (759)
Q Consensus 288 p~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k~~ 356 (759)
+..+|+++|+++|++||.|++|++.++++|||||+|.+.++|.+|++.++ .+.|+.|+|.|++++..
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 46789999999999999999999988899999999999999999999754 47899999999987654
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.17 E-value=5.3e-11 Score=119.23 Aligned_cols=75 Identities=12% Similarity=0.299 Sum_probs=67.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~----~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
..++|||+|||+++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|+..+ +..+.|++|.|.|+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4589999999999999999999999999999874 3678999999999999999999855 5689999999998743
No 361
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.14 E-value=2.8e-11 Score=113.05 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=64.8
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhccCCeEEEE-----eCCCcceEEEEEecC----HHH----HHHHHH--Hccccc
Q 004350 195 RTLFVRNI----NSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYD----IRA----ARTAMR--ALQNKP 255 (759)
Q Consensus 195 rtLfVgNL----P~~vteeeLr~lFs~fG~I~~v~-----~~gksrGfAFVeF~~----~e~----A~kAi~--~L~g~~ 255 (759)
++|||+|| |+.+++++|+++|++||+|..|. .+++++|||||+|.+ +++ |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999987 378999999999996 333 899988 789999
Q ss_pred cCCceeeEeecC
Q 004350 256 LRRRKLDIHFSI 267 (759)
Q Consensus 256 l~gr~L~V~~a~ 267 (759)
|.|++|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999753
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.14 E-value=1.2e-10 Score=105.50 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=65.5
Q ss_pred CccceEEecc--CCCCc--------HHHHHHHhhccCCeEEEEecC-------CCCceEEEEECCHHHHHHHHHHhCCCe
Q 004350 278 NQGTLVVFNL--DASVS--------NDDLRQIFGAYGEVKEIRETP-------HKRHHKFIEFYDVRAAEAALRALNRSD 340 (759)
Q Consensus 278 ~~~tLfV~NL--p~~~T--------eedLr~~Fs~fG~I~~v~i~~-------~s~GfgFVeF~~~e~A~~Al~~Lng~~ 340 (759)
.++.|.++|+ +..+. +++|++.|++||.|.+|++.. +++||+||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578999998 33343 379999999999999998742 468999999999999999999999999
Q ss_pred eCCcEEEEEecCC
Q 004350 341 INGKRIKLEPSRP 353 (759)
Q Consensus 341 i~G~~L~V~~a~~ 353 (759)
++|++|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999864
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4e-10 Score=101.29 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=64.0
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 194 SRTLFVRNIN-------SNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 194 ~rtLfVgNLP-------~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
.++|.|.-.. .++++++|+++|++||+|..|.+.++++|||||+|.+.++|++|++.+++ +.+++|.|+|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 4456665443 46899999999999999999998788999999999999999999998544 68999999998
Q ss_pred CCCC
Q 004350 267 IPKD 270 (759)
Q Consensus 267 ~~k~ 270 (759)
.++.
T Consensus 88 ~~~~ 91 (100)
T 2d9o_A 88 EGQP 91 (100)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.07 E-value=2.4e-10 Score=103.50 Aligned_cols=76 Identities=16% Similarity=0.337 Sum_probs=66.3
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEeC-------CCcceEEEEEecCHHHHHHHHHHcccc
Q 004350 192 HPSRTLFVRNI--NSNVE--------DLELRSLFEQYGDIRTLYTA-------CKHRGFVMISYYDIRAARTAMRALQNK 254 (759)
Q Consensus 192 ~~~rtLfVgNL--P~~vt--------eeeLr~lFs~fG~I~~v~~~-------gksrGfAFVeF~~~e~A~kAi~~L~g~ 254 (759)
.+++.|.++|+ |.++. +++|++.|++||.|.+|++. ++++|+|||+|.+.++|.+|++.|+|+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46899999998 44443 36899999999999999853 246899999999999999999999999
Q ss_pred ccCCceeeEeecC
Q 004350 255 PLRRRKLDIHFSI 267 (759)
Q Consensus 255 ~l~gr~L~V~~a~ 267 (759)
.|.|++|.|.|+.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999974
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.07 E-value=7.8e-11 Score=106.43 Aligned_cols=68 Identities=29% Similarity=0.414 Sum_probs=59.2
Q ss_pred EeccCCCCcHHHHHHHh------------hccCCeEEEEec----CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 004350 284 VFNLDASVSNDDLRQIF------------GAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (759)
Q Consensus 284 V~NLp~~~TeedLr~~F------------s~fG~I~~v~i~----~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~ 347 (759)
+.||+..+++++|++.| ++||.|.+|++. ++++|||||+|.+.++|++|++.|||+.++|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777777887777666 999999999874 34689999999999999999999999999999999
Q ss_pred EEec
Q 004350 348 LEPS 351 (759)
Q Consensus 348 V~~a 351 (759)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.05 E-value=2.5e-10 Score=124.02 Aligned_cols=77 Identities=18% Similarity=0.306 Sum_probs=67.7
Q ss_pred CCCCCcEEEEcC--CCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccC---Cc--eee
Q 004350 190 GEHPSRTLFVRN--INSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR---RR--KLD 262 (759)
Q Consensus 190 ~~~~~rtLfVgN--LP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~---gr--~L~ 262 (759)
...++++|||+| |++++|+++|+++|++||+|..|++. ++||||||+|.+.++|++|+++|+|+.+. |+ +|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 356789999999 58899999999999999999999865 58999999999999999999999999772 44 688
Q ss_pred EeecC
Q 004350 263 IHFSI 267 (759)
Q Consensus 263 V~~a~ 267 (759)
|.|+.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 88873
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.04 E-value=3.2e-10 Score=123.13 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=65.8
Q ss_pred cCccceEEec--cCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeC---Cc--EEEEE
Q 004350 277 VNQGTLVVFN--LDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIN---GK--RIKLE 349 (759)
Q Consensus 277 ~~~~tLfV~N--Lp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~---G~--~L~V~ 349 (759)
....+|||+| |++.+|+++|+++|++||+|++|.+.. +||||||+|.+.++|++|+++|||+++. |+ .|.|.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 3567999999 588999999999999999999998854 7899999999999999999999999883 44 57778
Q ss_pred ecC
Q 004350 350 PSR 352 (759)
Q Consensus 350 ~a~ 352 (759)
++.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 774
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.01 E-value=1.4e-10 Score=104.81 Aligned_cols=68 Identities=21% Similarity=0.381 Sum_probs=60.3
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEeC----CCcceEEEEEecCHHHHHHHHHHccccccCCceee
Q 004350 199 VRNINSNVEDLELRSLF------------EQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (759)
Q Consensus 199 VgNLP~~vteeeLr~lF------------s~fG~I~~v~~~----gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~ 262 (759)
+.+||+.+++++|++.| ++||+|.+|.+. ++++|||||+|.+.++|++|++.|+|+.+.|++|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888888887766 999999999853 45799999999999999999999999999999999
Q ss_pred Eeec
Q 004350 263 IHFS 266 (759)
Q Consensus 263 V~~a 266 (759)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9987
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.00 E-value=6.7e-10 Score=102.76 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=64.7
Q ss_pred CccceEEeccCC--C---CcHHHHHHHhhccCCeEEEEec---------CCCCceEEEEECCHHHHHHHHHHhCCCeeCC
Q 004350 278 NQGTLVVFNLDA--S---VSNDDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALRALNRSDING 343 (759)
Q Consensus 278 ~~~tLfV~NLp~--~---~TeedLr~~Fs~fG~I~~v~i~---------~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G 343 (759)
..++|+++|+-. + -.+++|++.|++||.|.+|.+. ++++||+||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457899999832 2 2468999999999999999752 2346999999999999999999999999999
Q ss_pred cEEEEEecCC
Q 004350 344 KRIKLEPSRP 353 (759)
Q Consensus 344 ~~L~V~~a~~ 353 (759)
++|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.98 E-value=1.3e-09 Score=100.16 Aligned_cols=76 Identities=20% Similarity=0.149 Sum_probs=64.7
Q ss_pred CccceEEeccCC--CC--------cHHHHHHHhhccCCeEEEEecCC-CCceEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 004350 278 NQGTLVVFNLDA--SV--------SNDDLRQIFGAYGEVKEIRETPH-KRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (759)
Q Consensus 278 ~~~tLfV~NLp~--~~--------TeedLr~~Fs~fG~I~~v~i~~~-s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L 346 (759)
.+++|.++|+=. +. .+++|++.|++||.|.+|.+... .+||+||+|.+.++|.+|++.|||..++|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 456788898832 21 24689999999999999998543 48999999999999999999999999999999
Q ss_pred EEEecCC
Q 004350 347 KLEPSRP 353 (759)
Q Consensus 347 ~V~~a~~ 353 (759)
+|.++..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999864
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.91 E-value=2.4e-09 Score=99.08 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCC--C---CCHHHHHHHhhccCCeEEEEeC---------CCcceEEEEEecCHHHHHHHHHHccccccCC
Q 004350 193 PSRTLFVRNINS--N---VEDLELRSLFEQYGDIRTLYTA---------CKHRGFVMISYYDIRAARTAMRALQNKPLRR 258 (759)
Q Consensus 193 ~~rtLfVgNLP~--~---vteeeLr~lFs~fG~I~~v~~~---------gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g 258 (759)
++++|+++|+-. + -.+++|++.|++||.|..|++. ++++|+|||+|.+.++|.+|++.|+|+.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 689999999842 2 2368999999999999998741 2467999999999999999999999999999
Q ss_pred ceeeEeecC
Q 004350 259 RKLDIHFSI 267 (759)
Q Consensus 259 r~L~V~~a~ 267 (759)
++|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.86 E-value=5.5e-09 Score=96.03 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCCCCC----------HHHHHHHhhccCCeEEEEeCC-CcceEEEEEecCHHHHHHHHHHccccccCCce
Q 004350 192 HPSRTLFVRNINSNVE----------DLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQNKPLRRRK 260 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vt----------eeeLr~lFs~fG~I~~v~~~g-ksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~ 260 (759)
.+++.|.++|+=..-. +++|++.|++||.|.+|.+.. ..+|||||+|.+.++|++|++.|+|+.|.|++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4678899998843222 357899999999999998643 35899999999999999999999999999999
Q ss_pred eeEeecC
Q 004350 261 LDIHFSI 267 (759)
Q Consensus 261 L~V~~a~ 267 (759)
|.|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999974
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=2.2e-08 Score=87.82 Aligned_cols=73 Identities=26% Similarity=0.405 Sum_probs=62.5
Q ss_pred CccceEEeccCC----CCcH----HHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 004350 278 NQGTLVVFNLDA----SVSN----DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (759)
Q Consensus 278 ~~~tLfV~NLp~----~~Te----edLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~ 349 (759)
...||+|.-.+. ++-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|++ |||..+.||+|+|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 467888887762 3334 67999999999999999864 348999999999999999 99999999999999
Q ss_pred ecCCC
Q 004350 350 PSRPG 354 (759)
Q Consensus 350 ~a~~k 354 (759)
++++.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 99874
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=7.6e-08 Score=89.24 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=71.8
Q ss_pred CccceEEeccCCC-CcHHHHHHHhhccCCeEEEEecCCCCceEEEEECC-HHHHHHHHHHhC--CCeeCCcEEEEEecCC
Q 004350 278 NQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD-VRAAEAALRALN--RSDINGKRIKLEPSRP 353 (759)
Q Consensus 278 ~~~tLfV~NLp~~-~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~-~e~A~~Al~~Ln--g~~i~G~~L~V~~a~~ 353 (759)
....|||+||+.+ ++.++|+++|++||+|..|.+.... ..|||+|.+ .++|.+|+++|+ +..|.|..++++...-
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 4568999999999 9999999999999999999985433 379999999 899999999995 7789999999987764
Q ss_pred CchhhhhhhhhhH
Q 004350 354 GGARRNLMQQLNQ 366 (759)
Q Consensus 354 k~~r~~~~~q~~~ 366 (759)
..+. .+.+...+
T Consensus 96 eeE~-~yw~Ki~e 107 (121)
T 1owx_A 96 EVEK-EALKKIIE 107 (121)
T ss_dssp HHHH-HHHHHHHH
T ss_pred HHHH-HHHHHHHH
Confidence 4443 45555444
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.3e-07 Score=83.48 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=62.0
Q ss_pred cCccceEEeccCCC-----CcH----HHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 004350 277 VNQGTLVVFNLDAS-----VSN----DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (759)
Q Consensus 277 ~~~~tLfV~NLp~~-----~Te----edLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~ 347 (759)
....||+|.-++.+ +-+ .+|.+.|..||+|..+++.... +||+|.+.++|.+||+ |+|.++.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 35679999988743 323 5699999999999999986444 9999999999999998 999999999999
Q ss_pred EEecCC
Q 004350 348 LEPSRP 353 (759)
Q Consensus 348 V~~a~~ 353 (759)
|++..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 998765
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=3.2e-07 Score=85.02 Aligned_cols=75 Identities=16% Similarity=0.144 Sum_probs=64.2
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecC-HHHHHHHHHHcc--ccccCCceeeEeec
Q 004350 191 EHPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYD-IRAARTAMRALQ--NKPLRRRKLDIHFS 266 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~-vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~-~e~A~kAi~~L~--g~~l~gr~L~V~~a 266 (759)
-...+.|||+||+++ ++.++|+++|++||+|..|.+. +....|||+|.+ .++|.+|+++|+ +..|.+..+.++..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~-~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV-RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC-TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 345789999999999 9999999999999999999864 344479999999 899999999994 67788887777654
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.35 E-value=5.2e-07 Score=91.36 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=56.5
Q ss_pred CcHHHHHHHhhccCCeEEEEec---------CCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 004350 291 VSNDDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (759)
Q Consensus 291 ~TeedLr~~Fs~fG~I~~v~i~---------~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~ 352 (759)
-.+++|++.|++||.|.+|.+. ++++|++||+|.+.++|++|++.|||..++||.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4678999999999999999762 2678999999999999999999999999999999999975
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=1.1e-06 Score=77.21 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCC----CCCCH----HHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeE
Q 004350 192 HPSRTLFVRNIN----SNVED----LELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (759)
Q Consensus 192 ~~~rtLfVgNLP----~~vte----eeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V 263 (759)
.+.-||+|.-.+ .++-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|+. |+|..+.|+.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 456788888877 23444 57889999999999998642 228999999999999998 9999999999999
Q ss_pred eecCC
Q 004350 264 HFSIP 268 (759)
Q Consensus 264 ~~a~~ 268 (759)
+++.+
T Consensus 81 ~lkt~ 85 (91)
T 2dnr_A 81 ALKSP 85 (91)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 98865
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.20 E-value=2.4e-06 Score=86.50 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=56.3
Q ss_pred CCHHHHHHHhhccCCeEEEEe---------CCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecC
Q 004350 206 VEDLELRSLFEQYGDIRTLYT---------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (759)
Q Consensus 206 vteeeLr~lFs~fG~I~~v~~---------~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~ 267 (759)
-.+++|++.|++||+|..+.+ +++++|++||+|.+.++|++|+..|+|+.+.||+|.+.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 456899999999999999885 12789999999999999999999999999999999999974
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=6.9e-06 Score=74.01 Aligned_cols=72 Identities=24% Similarity=0.263 Sum_probs=65.7
Q ss_pred CccceEEeccCCCCcHHHHHHHhhcc-----CCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 004350 278 NQGTLVVFNLDASVSNDDLRQIFGAY-----GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (759)
Q Consensus 278 ~~~tLfV~NLp~~~TeedLr~~Fs~f-----G~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~ 350 (759)
..++|-+-|||..++++.++.+.+++ |.|+.|.+.+...| |+|+|.|...|-+|.-+|+|.+|+|++|++.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-Aivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-AIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-EEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-eEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 35789999999999999999999999 99999988766544 99999999999999999999999999999864
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=7.3e-06 Score=72.31 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=59.6
Q ss_pred CCCCcEEEEcCCCCC-----CCH----HHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCcee
Q 004350 191 EHPSRTLFVRNINSN-----VED----LELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 261 (759)
Q Consensus 191 ~~~~rtLfVgNLP~~-----vte----eeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L 261 (759)
-.++.||+|.-++.+ +-+ .+|.+.|.+||+|..+++.... +||+|.+.++|.+|++ |+|..+.|+.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 356789999988743 323 4688999999999988853222 9999999999999999 99999999999
Q ss_pred eEeec
Q 004350 262 DIHFS 266 (759)
Q Consensus 262 ~V~~a 266 (759)
+|++-
T Consensus 88 ~V~~k 92 (95)
T 1ufw_A 88 KISGP 92 (95)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99864
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00012 Score=66.00 Aligned_cols=72 Identities=11% Similarity=0.151 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEe
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~f-----G~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~ 264 (759)
...++|-+-|||..+++..|+.+.+++ |.|+.|.+- +..+=|+|+|.|...|-+|.-+|+|..|.|++|++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~-pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLV-SDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEE-TTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEe-cCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 447999999999999999999999999 999999865 445669999999999999999999999999999985
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.00061 Score=60.85 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-----cCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQ-----YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~-----fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a 266 (759)
...++|.|.|||.++.++.|.-+|+. =|+|..+...+ +-|+|+|.+.+.|++.++ -....|.+.+|.|...
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEEC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcC
Confidence 34689999999999999999999997 26788887653 789999999999999998 3467889999999765
Q ss_pred CCCCCCCCCccCccceEEeccCCCCc
Q 004350 267 IPKDNPSEKDVNQGTLVVFNLDASVS 292 (759)
Q Consensus 267 ~~k~~~~~~~~~~~tLfV~NLp~~~T 292 (759)
.+. ...+|++++|++.|+
T Consensus 82 ~~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 82 PPR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp CCC--------CCCCCCCCSCCCCCC
T ss_pred CCC--------CcceEeeecCCCCCC
Confidence 432 245799999998875
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00036 Score=62.33 Aligned_cols=83 Identities=23% Similarity=0.307 Sum_probs=70.7
Q ss_pred ccceEEeccCCCCcHHHHHHHhhc-----cCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGA-----YGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~-----fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~ 353 (759)
..+|.|.|||..+.++.|.-+|+. -|+|..++..+ +-|+|+|.+.+.|++.|+. ..+.|.|..|.|...-+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 568999999999999999999986 27899998766 5699999999999999983 36799999999999888
Q ss_pred Cchhhhhhhhhh
Q 004350 354 GGARRNLMQQLN 365 (759)
Q Consensus 354 k~~r~~~~~q~~ 365 (759)
+..++.+++.+.
T Consensus 84 ~~~~r~ll~gl~ 95 (104)
T 2dhx_A 84 RAPARLLLQGLP 95 (104)
T ss_dssp CCCCCCCCCSCC
T ss_pred CCcceEeeecCC
Confidence 888776665543
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.002 Score=57.67 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=61.7
Q ss_pred cceEEeccCCCC-cH----HHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 004350 280 GTLVVFNLDASV-SN----DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (759)
Q Consensus 280 ~tLfV~NLp~~~-Te----edLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G~~L~V~~a~~k 354 (759)
++|+|.||+.++ +. +.++++|..|+++.....-+.- .-..|.|.+.++|.+|-..|++..+.|++|+|-++++.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 579999998865 32 5678999999988887654322 24699999999999999999999999999999999854
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.50 E-value=0.0028 Score=56.78 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=62.2
Q ss_pred CcEEEEcCCCCCC-CH----HHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCCceeeEeecCC
Q 004350 194 SRTLFVRNINSNV-ED----LELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (759)
Q Consensus 194 ~rtLfVgNLP~~v-te----eeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr~L~V~~a~~ 268 (759)
.++|+|.||+.++ +. +.++++|..|+++.....- ++-.=..|.|.++++|.+|-..|++..+.|++|+|-|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4789999999876 32 5678999999998876643 3333468999999999999999999999999999999874
Q ss_pred C
Q 004350 269 K 269 (759)
Q Consensus 269 k 269 (759)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.94 E-value=0.027 Score=49.36 Aligned_cols=74 Identities=5% Similarity=0.031 Sum_probs=58.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eCC------CcceEEEEEecCHHHHHHHHHHccccccCCc-----eee
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TAC------KHRGFVMISYYDIRAARTAMRALQNKPLRRR-----KLD 262 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-~~g------ksrGfAFVeF~~~e~A~kAi~~L~g~~l~gr-----~L~ 262 (759)
++|.|++||++.|++++.+.+..+.++.... +.| ..-.-|||.|.+.+++....+.++|..|.+. +-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5799999999999999999999998766544 222 2345799999999999999999999887543 345
Q ss_pred EeecCC
Q 004350 263 IHFSIP 268 (759)
Q Consensus 263 V~~a~~ 268 (759)
|++|.-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666643
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.93 E-value=0.03 Score=51.37 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=60.5
Q ss_pred ccCccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEecC
Q 004350 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDING-KRIKLEPSR 352 (759)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Lng~~i~G-~~L~V~~a~ 352 (759)
......|.|.+.+.... ..+.+.|++||+|.+... .....+-.|+|.++.+|++||. .||..|+| -.|-|.+..
T Consensus 21 ~~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 33456799999998864 557778999999999887 3456899999999999999998 59999985 667777764
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.71 E-value=0.11 Score=45.56 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=51.6
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEe-cCC------CCceEEEEECCHHHHHHHHHHhCCCeeC
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-TPH------KRHHKFIEFYDVRAAEAALRALNRSDIN 342 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-~~~------s~GfgFVeF~~~e~A~~Al~~Lng~~i~ 342 (759)
.+|.|++||+.+|++++.+.++.+.++...+. .++ .-.-|+|.|.+.+++..-.+.++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 47999999999999999999999887655543 222 1245899999999999999999999763
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.63 E-value=0.071 Score=47.13 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=43.0
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhC
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN 337 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Ln 337 (759)
..++| +.|.++...||.++|++||.|.---++ ...|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 34666 999999999999999999865322232 2369999999999999999763
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.52 E-value=0.071 Score=47.15 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=46.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHcc
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 252 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~ 252 (759)
..+.++| ++|..+...||.++|++||.|.--.+. -.-|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 3567777 999999999999999999965433332 3579999999999999999765
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.44 E-value=0.099 Score=47.95 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=59.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccccccCC-ceeeEeec
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-RKLDIHFS 266 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g~~l~g-r~L~V~~a 266 (759)
...+-|.|-+.|+.. ...+...|++||+|.+...+ ....+..|.|.+..+|++|+. .+|+.+.+ ..|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 346889999999885 67788899999999998763 456799999999999999999 69988874 56677664
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.77 E-value=0.027 Score=63.22 Aligned_cols=57 Identities=9% Similarity=0.255 Sum_probs=44.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHH
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMR 249 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~ 249 (759)
...|.|||. .|..+++.+|.++|++||+|..+......+-||.|||.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 346899997 799999999999999999999998665566799999999999997765
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.43 E-value=0.056 Score=47.93 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=44.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHcc
Q 004350 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 252 (759)
Q Consensus 195 rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~ 252 (759)
+.++| ++|..+...||.++|++||.|.--.+. -.-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 46667 999999999999999999955433332 4579999999999999999775
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.34 E-value=0.068 Score=47.38 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=42.7
Q ss_pred ceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhC
Q 004350 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN 337 (759)
Q Consensus 281 tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Ln 337 (759)
.++| +.|.++...||.++|++||.|. |+... ...|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~-I~Wid--DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID--DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEE--TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEE-EEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 4556 9999999999999999999543 43221 2369999999999999999874
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.45 E-value=0.2 Score=44.35 Aligned_cols=75 Identities=8% Similarity=0.037 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eCCC------cceEEEEEecCHHHHHHHHHHccccccCCc-----e
Q 004350 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACK------HRGFVMISYYDIRAARTAMRALQNKPLRRR-----K 260 (759)
Q Consensus 193 ~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-~~gk------srGfAFVeF~~~e~A~kAi~~L~g~~l~gr-----~ 260 (759)
.+-+|.|+.||++.||+++.+.+..+=++...+ +.|+ .-.-|||.|.+.++.....+..+|..|.+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 456899999999999999888877665543222 1111 224589999999999999999999887543 4
Q ss_pred eeEeecC
Q 004350 261 LDIHFSI 267 (759)
Q Consensus 261 L~V~~a~ 267 (759)
-.|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4566664
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.26 E-value=0.14 Score=47.77 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=55.5
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEE-Eec----------------C--CCCceEEEEECCHHHHHHHHHHhCCC
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-RET----------------P--HKRHHKFIEFYDVRAAEAALRALNRS 339 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v-~i~----------------~--~s~GfgFVeF~~~e~A~~Al~~Lng~ 339 (759)
..-|.|.+.|.+.+.. +-+.|++||.|.+- ... + ...++--|+|+++.+|++||. -||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3468888987776654 66789999999772 111 1 124677999999999999998 5999
Q ss_pred eeCCcEEEEEecC
Q 004350 340 DINGKRIKLEPSR 352 (759)
Q Consensus 340 ~i~G~~L~V~~a~ 352 (759)
.|+|.-|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988888885
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.26 E-value=0.09 Score=58.99 Aligned_cols=56 Identities=11% Similarity=0.164 Sum_probs=43.6
Q ss_pred ccceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHH
Q 004350 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRA 335 (759)
Q Consensus 279 ~~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~ 335 (759)
.+.|+|. .+..+++.+|.+.|++||.|.++........|+.|||.+.+++++++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4689997 7999999999999999999999987766778999999999999977653
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=89.75 E-value=0.7 Score=40.82 Aligned_cols=63 Identities=8% Similarity=0.055 Sum_probs=48.2
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEe-cCC------CCceEEEEECCHHHHHHHHHHhCCCeeC
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-TPH------KRHHKFIEFYDVRAAEAALRALNRSDIN 342 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i-~~~------s~GfgFVeF~~~e~A~~Al~~Lng~~i~ 342 (759)
-+|.|+.||+.+|++++.+.++++-++..... .++ .-.-|+|.|.+.++...-.+..+|+.+-
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 47999999999999999988887655422221 111 1234899999999999999999999763
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.58 E-value=0.41 Score=44.52 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=53.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eC-----------------C-CcceEEEEEecCHHHHHHHHHHcccc
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TA-----------------C-KHRGFVMISYYDIRAARTAMRALQNK 254 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~-~~-----------------g-ksrGfAFVeF~~~e~A~kAi~~L~g~ 254 (759)
..-|.|=+.|.+.+ ..+.+.|++||.|.+-. .+ . ....+..|.|.+..+|++|+. .+|+
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45677778865554 55677999999997732 11 0 135578999999999999999 7999
Q ss_pred ccCCceeeEeec
Q 004350 255 PLRRRKLDIHFS 266 (759)
Q Consensus 255 ~l~gr~L~V~~a 266 (759)
.|.|..|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999988888765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=76.06 E-value=5.2 Score=45.28 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=46.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccc
Q 004350 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 253 (759)
Q Consensus 194 ~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g 253 (759)
...++|+ +|..+...+|.++|+.||.|.-..+ ....|||.|.+.+.|..+++++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 4577777 9999999999999999997655444 345799999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=64.52 E-value=13 Score=42.04 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=44.0
Q ss_pred cceEEeccCCCCcHHHHHHHhhccCCeEEEEecCCCCceEEEEECCHHHHHHHHHHhC
Q 004350 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN 337 (759)
Q Consensus 280 ~tLfV~NLp~~~TeedLr~~Fs~fG~I~~v~i~~~s~GfgFVeF~~~e~A~~Al~~Ln 337 (759)
..++|+ ++..+...+|.+.|+.||.|.-..++ ...+||.|.+.+.|..+++.+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS---SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc---CCeEEEEECCHHHHHHHHHHHH
Confidence 456666 88999999999999999975443443 3459999999999999999885
No 403
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=50.38 E-value=3.5 Score=38.16 Aligned_cols=17 Identities=59% Similarity=0.843 Sum_probs=0.6
Q ss_pred CCCCCCCcccCCCCCCC
Q 004350 572 FIGSHHQHHVGSAPSGV 588 (759)
Q Consensus 572 ~~~~~~~~hvgsap~~~ 588 (759)
|.++|||||-|||-+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (157)
T 2qih_A 1 MRGSHHHHHHGSATSAN 17 (157)
T ss_dssp ----------------C
T ss_pred CCCcccccccccccccc
Confidence 45789999999998766
No 404
>2ls0_1 Zoocin A endopeptidase; specificity, hydrolase; NMR {Streptococcus equi subsp}
Probab=42.09 E-value=10 Score=34.39 Aligned_cols=15 Identities=60% Similarity=1.090 Sum_probs=12.7
Q ss_pred CCCCCCCcccCCCCC
Q 004350 572 FIGSHHQHHVGSAPS 586 (759)
Q Consensus 572 ~~~~~~~~hvgsap~ 586 (759)
|.++|||||-||-|.
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (128)
T 2ls0_1 1 MRGSHHHHHHGSEPT 15 (128)
T ss_dssp CCSCCCCCCCCSCCC
T ss_pred CCccccccccCCCCC
Confidence 457899999999986
No 405
>3v2a_A Vascular endothelial growth factor A; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens}
Probab=32.87 E-value=9.2 Score=35.62 Aligned_cols=16 Identities=63% Similarity=1.020 Sum_probs=0.0
Q ss_pred CCCCCCcccCCCCCCC
Q 004350 573 IGSHHQHHVGSAPSGV 588 (759)
Q Consensus 573 ~~~~~~~hvgsap~~~ 588 (759)
.++|||||-||||-..
T Consensus 3 ~~~~~~~~~~~~~~~~ 18 (134)
T 3v2a_A 3 FGSHHHHHHGSAPMAE 18 (134)
T ss_dssp ----------------
T ss_pred cccccccccCCCcccc
Confidence 3678899999999543
No 406
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=28.68 E-value=13 Score=36.73 Aligned_cols=21 Identities=52% Similarity=1.036 Sum_probs=7.2
Q ss_pred CCCCCCCcccCCCCCCCcccccc
Q 004350 572 FIGSHHQHHVGSAPSGVSLDRNF 594 (759)
Q Consensus 572 ~~~~~~~~hvgsap~~~~~~~~~ 594 (759)
|.++|||||-||- +..|||.|
T Consensus 1 ~~~~~~~~~~~~~--~~qfDrGY 21 (201)
T 3osx_A 1 MRGSHHHHHHGSE--GMQFDRGY 21 (201)
T ss_dssp -----------CC--CEEESCCB
T ss_pred CCCcccccccCcc--ccEecCcc
Confidence 3568899999986 66788854
No 407
>2ft0_A TDP-fucosamine acetyltransferase; GNAT fold acetyltransferase, structural genomics, montreal-K bacterial structural genomics initiative, BSGI; HET: ACO; 1.66A {Escherichia coli} PDB: 2fs5_A*
Probab=25.58 E-value=8.1 Score=38.07 Aligned_cols=20 Identities=40% Similarity=0.523 Sum_probs=5.3
Q ss_pred CCCCCcccCCCC--CCCc--cccc
Q 004350 574 GSHHQHHVGSAP--SGVS--LDRN 593 (759)
Q Consensus 574 ~~~~~~hvgsap--~~~~--~~~~ 593 (759)
.+|||||-||.- +..| ||+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~we~~ 26 (235)
T 2ft0_A 3 SSHHHHHHGSPVRASIEPLTWENA 26 (235)
T ss_dssp -----------CBEEEEECHHHHH
T ss_pred cccccccCCCcceeecccchhhHH
Confidence 467888888864 3334 9995
No 408
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=25.12 E-value=17 Score=32.39 Aligned_cols=18 Identities=50% Similarity=0.676 Sum_probs=1.0
Q ss_pred CCCCCCCcccCCCCCCCc
Q 004350 572 FIGSHHQHHVGSAPSGVS 589 (759)
Q Consensus 572 ~~~~~~~~hvgsap~~~~ 589 (759)
|.++|||||-|-||+-..
T Consensus 1 ~~~~~~~~~~~~~p~~s~ 18 (104)
T 2fq3_A 1 MRGSHHHHHHGMASSYSK 18 (104)
T ss_dssp ----------------CT
T ss_pred CCCccccccCCCCCCccc
Confidence 357889999999998554
No 409
>2a50_A ASFP595, GFP-like non-fluorescent chromoprotein FP595 CHAI; ASCP, fluorescent protein, photochromic prote reversible photoswitch; HET: NRQ; 1.30A {Anemonia sulcata} PDB: 2a52_A* 2a53_A* 2a54_A* 2a56_A* 3cfa_L* 3cff_L* 3cfh_L*
Probab=24.95 E-value=16 Score=30.39 Aligned_cols=14 Identities=64% Similarity=1.018 Sum_probs=4.3
Q ss_pred CCCCCCCcccCCCC
Q 004350 572 FIGSHHQHHVGSAP 585 (759)
Q Consensus 572 ~~~~~~~~hvgsap 585 (759)
+.++|||||-|||-
T Consensus 1 ~~~~~~~~~~~~~~ 14 (73)
T 2a50_A 1 MRGSHHHHHHGSAS 14 (73)
T ss_dssp ---------CCSGG
T ss_pred CCccccccccCchh
Confidence 35688999999994
No 410
>2xiw_A DNA-binding protein 7D; HET: MSE; 1.50A {Sulfolobus acidocaldarius}
Probab=24.88 E-value=15 Score=29.66 Aligned_cols=13 Identities=62% Similarity=0.971 Sum_probs=1.0
Q ss_pred CCCCCCcccCCCC
Q 004350 573 IGSHHQHHVGSAP 585 (759)
Q Consensus 573 ~~~~~~~hvgsap 585 (759)
.++|||||-||.-
T Consensus 2 rgshhhhhhgsvk 14 (79)
T 2xiw_A 2 RGSHHHHHHGSVK 14 (79)
T ss_dssp -----------CE
T ss_pred CCcccccccCcEE
Confidence 4678888888763
No 411
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=24.71 E-value=16 Score=27.95 Aligned_cols=12 Identities=67% Similarity=1.110 Sum_probs=0.0
Q ss_pred CCCCCCCcccCC
Q 004350 572 FIGSHHQHHVGS 583 (759)
Q Consensus 572 ~~~~~~~~hvgs 583 (759)
|.++|||||-||
T Consensus 44 ~~~~~~~~~~~~ 55 (55)
T 1x93_A 44 MRGSHHHHHHGS 55 (55)
T ss_dssp ------------
T ss_pred HccccccccCCC
Confidence 556677777665
No 412
>1v1p_B Exotoxin 1; virulence factor, antigen presenting cell, secreted protein, SET1, superantigen, OB-fold, {beta}-grAsp; 2.7A {Staphylococcus aureus} SCOP: b.40.2.2 d.15.6.1 PDB: 1v1o_A 1v1p_A 2qej_C* 3km9_X*
Probab=24.11 E-value=16 Score=36.57 Aligned_cols=18 Identities=50% Similarity=0.720 Sum_probs=0.0
Q ss_pred CCCCCCCcccCCCCCCCc
Q 004350 572 FIGSHHQHHVGSAPSGVS 589 (759)
Q Consensus 572 ~~~~~~~~hvgsap~~~~ 589 (759)
|.++|||||-|||--..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (213)
T 1v1p_B 1 MRGSHHHHHHGSAEKQER 18 (213)
T ss_dssp ------------------
T ss_pred CCcccccccccchhhhhh
Confidence 457899999999975443
No 413
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=23.33 E-value=17 Score=28.68 Aligned_cols=14 Identities=57% Similarity=0.921 Sum_probs=1.1
Q ss_pred CCCCCCCcccCCCC
Q 004350 572 FIGSHHQHHVGSAP 585 (759)
Q Consensus 572 ~~~~~~~~hvgsap 585 (759)
|.++|||||-||--
T Consensus 1 mrgshhhhhhgsk~ 14 (66)
T 2k1o_A 1 MRGSHHHHHHGSKR 14 (66)
T ss_dssp ------------CC
T ss_pred CCCccccccccccc
Confidence 35678888888864
No 414
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=21.51 E-value=20 Score=37.81 Aligned_cols=14 Identities=64% Similarity=0.992 Sum_probs=0.0
Q ss_pred CCCCCCCcccCCCC
Q 004350 572 FIGSHHQHHVGSAP 585 (759)
Q Consensus 572 ~~~~~~~~hvgsap 585 (759)
|.++|||||-|||-
T Consensus 1 ~~~~~~~~~~~~~~ 14 (314)
T 2dvz_A 1 MRGSHHHHHHGSAD 14 (314)
T ss_dssp --------------
T ss_pred CCCccccccCCccc
Confidence 35789999999993
No 415
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=21.32 E-value=23 Score=31.57 Aligned_cols=16 Identities=50% Similarity=0.798 Sum_probs=3.0
Q ss_pred CCCCCCcccCCCCCCC
Q 004350 573 IGSHHQHHVGSAPSGV 588 (759)
Q Consensus 573 ~~~~~~~hvgsap~~~ 588 (759)
.++|||||-||-++-.
T Consensus 2 ~~~~~~~~~~~~~s~~ 17 (113)
T 2lnk_A 2 RGSHHHHHHGSMACPL 17 (113)
T ss_dssp -----------CCCHH
T ss_pred CCccccccCCCCCCCc
Confidence 4678888888887643
No 416
>2j2j_A Fiber protein; CAR, KNOB, head, fiber fibre, coxsackievirus, adenovirus receptor, viral protein; 1.5A {Canine adenovirus 2} SCOP: b.21.1.1 PDB: 2j1k_C 2w9l_C* 2wbv_A*
Probab=21.02 E-value=21 Score=35.28 Aligned_cols=17 Identities=53% Similarity=0.935 Sum_probs=0.8
Q ss_pred CCCCCCCcccCCCCCCC
Q 004350 572 FIGSHHQHHVGSAPSGV 588 (759)
Q Consensus 572 ~~~~~~~~hvgsap~~~ 588 (759)
|.++|||||-||.|..-
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (197)
T 2j2j_A 1 MRGSHHHHHHGSPPAAP 17 (197)
T ss_dssp ---------------CC
T ss_pred CCccccccccCCCCCCC
Confidence 45788999999987533
No 417
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.55 E-value=4e+02 Score=22.87 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=47.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcceEEEEEecCHHHHHHHHHHccc
Q 004350 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 253 (759)
Q Consensus 192 ~~~rtLfVgNLP~~vteeeLr~lFs~fG~I~~v~~~gksrGfAFVeF~~~e~A~kAi~~L~g 253 (759)
...+-|.|-|+|..+-..++--.....|---.|.. -.|.|+|.|.+.++.+-|+.+|-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdy---idgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDY---IDGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEE---CSSCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeee---ecCeeEEEecCChHHHHHHHHHHh
Confidence 34688999999999999998877777776555542 246799999999999999987743
Done!